Citrus Sinensis ID: 021744

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRAHFSRDVTSLLGSVSFIMFIGQNNKGVVCYR
Secondary Structure (PSIPRED)
cccccccccEEEEEEEccccccccccccccccccccccEEEEcccccccccccccccccccccccccccEEEEccccccEEccccccccccEEEcccccccccccEEEEEcEEEEcccccEEEEccccccEEEEEcccccEEccccccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEccccEEEEEEEcccEEEEEcccEEEEEEcccccEEEcccccccEEEEEEcccEEEEEcccccEEEEEccccccccccccEEccccccEEEEEEccccEEEEEccccEEEEEcccccEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEcccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccEEEEccccEEEEEEcccccEEEEEccccEEEEEEEcccEEEEEccccEEEEEEcccccccccHHHHEccccccEEEEEEcccEEEEcccEEEEEEEcccccEEEEc
Coil and Loop (DISEMBL)
mdfdahggnkrvfhrlgggggdggggglstaDTRQKVCNYwragkcnrfpcpylhrelplppaatangAAAKRFanntwgrnnnfnnhsnnyragnsknsninnravIKTDILCRnwvqgncmygekckflhswtvgdgfKLLTQLEghqkvvsgitlpsgsdklysgskdetvrvwdcasgqcagvinlggevgcmisegpwifIGVTNFVKAWNTqtntdlslsgpvgQVYAMAVGNDllfagtqdgaiLAWKFnvttncfepaaslkvhtdsnrahfsrDVTSLLGSVSFIMFIGqnnkgvvcyr
Flexible Loop (DISEMBL)
MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRagnsknsninnRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVsgitlpsgsdklysgsKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRAHFSRDVTSLLGSVSFimfigqnnkgvvcyr
Low Complexity Region (SEG)
MDFDAHGGNKRVFHRLgggggdgggggLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPaatangaaakrfanntwgrnnnfnnhsnnYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRAHFSRDVTSLLGSVSFIMFIGQNNKGVVCYR
Disordered region (IsUnstruct)
***********************************KVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWGR********************INNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG*DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRAHFSRDVTSLLGSVSFIMFIGQNNKGVVCY*
Disordered Region (DISOPRED)
*******GN****************************CNYWRAGKCNRFPCPYLH********************************HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRAHFSRDVTSLLGSVSFIMFIGQNNKGVVCYR
Disordered Region (DISEMBL)
MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRAHFSRDVTSLLGSVSFIMFIGQNNKGVVCYR
Disordered Region (DISPRO)
*******GNKR***********************QKVCNYWRAGKCNRFPCPYLHRELPLPP**********************************************KTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRAHFSRDVTSLLGSVSFIMFIGQNNKGVVCYR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRAHFSRDVTSLLGSVSFIMFIGQNNKGVVCYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	308	2.2.26 [Sep-21-2011]
Q9FNZ2	430	Zinc finger CCCH domain-c	yes	no	0.844	0.604	0.610	5e-96
Q9FNZ1	443	Zinc finger CCCH domain-c	no	no	0.870	0.604	0.594	4e-93
Q0DYP5	435	Zinc finger CCCH domain-c	yes	no	0.837	0.593	0.517	5e-78
Q9FE91	419	Zinc finger CCCH domain-c	no	no	0.522	0.384	0.509	4e-42
Q9FKR9	472	Zinc finger CCCH domain-c	no	no	0.519	0.338	0.509	9e-42
P49695	742	Probable serine/threonine	yes	no	0.474	0.196	0.292	2e-08
Q969H0	707	F-box/WD repeat-containin	yes	no	0.441	0.192	0.310	1e-07
Q8VBV4	629	F-box/WD repeat-containin	no	no	0.370	0.181	0.336	2e-07
Q54KL5	335	WD repeat-containing prot	no	no	0.438	0.402	0.270	9e-07
Q54QU5	359	WD repeat-containing prot	no	no	0.373	0.320	0.275	1e-06

>sp|Q9FNZ2|C3H48_ARATH Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1

 Score =  351 bits (900), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 171/280 (61%), Positives = 206/280 (73%), Gaps = 20/280 (7%)

Query: 1   MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPL 60
           MD D +GGNKRVF RLGGG          T D+ QKVC +WRAG+CNR+PCPYLHRELP 
Sbjct: 1   MDLDMNGGNKRVFQRLGGGSNR------PTTDSNQKVCFHWRAGRCNRYPCPYLHRELPG 54

Query: 61  PPAATANGAAAKR------FANNTWGRNNNFNNHSNNY-RAGNSKNSNINNRAVIKTDIL 113
           P +     ++ KR      FA  +  R   F+  +NN+ R G        NR V KT+ L
Sbjct: 55  PGSGPVAASSNKRVADESGFAGPSHRRGPGFSGTANNWGRFGG-------NRTVTKTEKL 107

Query: 114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET 173
           C+ WV GNC YG+KC++LH W+ GD F LLTQL+GHQKVV+GI LPSGSDKLY+ SKDET
Sbjct: 108 CKFWVDGNCPYGDKCRYLHCWSKGDSFSLLTQLDGHQKVVTGIALPSGSDKLYTASKDET 167

Query: 174 VRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVY 233
           VR+WDCASGQC GV+NLGGEVGC+ISEGPW+ +G+ N VKAWN Q N DLSL+GPVGQVY
Sbjct: 168 VRIWDCASGQCTGVLNLGGEVGCIISEGPWLLVGMPNLVKAWNIQNNADLSLNGPVGQVY 227

Query: 234 AMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT 273
           ++ VG DLLFAGTQDG+IL W++N TT+CF+PAASL  HT
Sbjct: 228 SLVVGTDLLFAGTQDGSILVWRYNSTTSCFDPAASLLGHT 267

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNZ1|C3H63_ARATH Zinc finger CCCH domain-containing protein 63 OS=Arabidopsis thaliana GN=ZFWD2 PE=2 SV=1

 Score =  341 bits (874), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 166/279 (59%), Positives = 204/279 (73%), Gaps = 11/279 (3%)

Query: 1   MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPL 60
           MDFD +GGNKRVF+RLGGGGG      ++  DTRQKVC +WRAG+CNR PCPYLHRELP 
Sbjct: 1   MDFDLNGGNKRVFNRLGGGGGSTRP--MAPTDTRQKVCFHWRAGRCNRSPCPYLHRELP- 57

Query: 61  PPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNIN------NRAVIKTDILC 114
                        + N      + F   S+    G + NS+ +      NR V KT+ +C
Sbjct: 58  --GPGPGQGQGPGYTNKRVAEESGFAGPSHRRGPGFNGNSSSSWGRFGGNRTVTKTEKVC 115

Query: 115 RNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETV 174
             WV GNC YG+KC++LH W+ G+ F LLTQL+GH+K+VSGI LPSGSDKLY+GSKDET+
Sbjct: 116 NFWVDGNCTYGDKCRYLHCWSKGESFALLTQLDGHEKLVSGIALPSGSDKLYTGSKDETL 175

Query: 175 RVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYA 234
           RVWDCASGQC GV+ LGGE+GC++SEGPW+ +G+ N VKAWN +TN D SLSGPVGQVY+
Sbjct: 176 RVWDCASGQCTGVLKLGGEIGCVLSEGPWLLVGMPNLVKAWNIETNADQSLSGPVGQVYS 235

Query: 235 MAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT 273
           + VG DLLFAGTQDG+ILAW++N  TNCFEP+ASL  HT
Sbjct: 236 LVVGTDLLFAGTQDGSILAWRYNAATNCFEPSASLTGHT 274

Arabidopsis thaliana (taxid: 3702)

>sp|Q0DYP5|C3H17_ORYSJ Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=Os02g0677700 PE=2 SV=2

 Score =  291 bits (745), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 148/286 (51%), Positives = 188/286 (65%), Gaps = 28/286 (9%)

Query: 1   MDFDAHG--GNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHREL 58
           MD +  G  GNKRV HRLG   G       +++ T  KVC +WRAG+CNRFPCPYLH EL
Sbjct: 1   MDIETDGRFGNKRVHHRLGPANG------AASSSTSGKVCIHWRAGRCNRFPCPYLHSEL 54

Query: 59  PLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKT-------- 110
           P         A AKR + +  G N   N HS       +  +   N+             
Sbjct: 55  P--------EATAKRPSQSGGGGNVWRNPHSGGGGGRGAGGAGGPNKWGRGPGGADGGPR 106

Query: 111 ----DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY 166
               D  CR ++ G+C YGEKC++ HS+++ D   +LT L+GH+KVV+GI LP+GSDKLY
Sbjct: 107 HKVPDRPCRYFLAGDCSYGEKCRYPHSYSMSDSITMLTPLQGHEKVVTGIALPAGSDKLY 166

Query: 167 SGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS 226
           SGSKD TVR+WDC +GQCAGVIN+G E+GCMISEGPW+F+G+ + VK WN QT  +++L+
Sbjct: 167 SGSKDGTVRMWDCQTGQCAGVINMGREIGCMISEGPWLFVGIPDAVKVWNMQTQAEMNLT 226

Query: 227 GPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVH 272
           GP GQVYA+AVGN+LLFA TQDG ILAW+F+  TN FEPAASL  H
Sbjct: 227 GPTGQVYALAVGNELLFAATQDGRILAWRFSAATNGFEPAASLVGH 272

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FE91|C3H62_ARATH Zinc finger CCCH domain-containing protein 62 OS=Arabidopsis thaliana GN=ZFWD4 PE=2 SV=1

 Score =  171 bits (434), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 84/165 (50%), Positives = 110/165 (66%), Gaps = 4/165 (2%)

Query: 113 LCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE 172
           +C+ W  G C  GE+C+FLHSW+   G  ++  LEGH K + GI LP GSDKL+S S D 
Sbjct: 94  VCKYWKDGKCKRGEQCQFLHSWSCFPGLAMVASLEGHNKELKGIALPEGSDKLFSVSIDG 153

Query: 173 TVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSL--SGPVG 230
           T+RVWDC SGQC   INL  E G +ISEGPW+F+G+ N +KA+N QT+ DL L  +G VG
Sbjct: 154 TLRVWDCNSGQCVHSINLDAEAGSLISEGPWVFLGLPNAIKAFNVQTSQDLHLQAAGVVG 213

Query: 231 QVYAMAVGNDLLFAGTQDGAILAWKFNV--TTNCFEPAASLKVHT 273
           QV AM + N +LFAGT  G+IL WK      ++ F+   SL+ H+
Sbjct: 214 QVNAMTIANGMLFAGTSSGSILVWKATTDSESDPFKYLTSLEGHS 258

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKR9|C3H59_ARATH Zinc finger CCCH domain-containing protein 59 OS=Arabidopsis thaliana GN=ZFWD3 PE=2 SV=1

 Score =  171 bits (432), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 82/161 (50%), Positives = 107/161 (66%), Gaps = 1/161 (0%)

Query: 113 LCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE 172
           +C  W  GNC  GEKC+FLHSW+   G  ++  LEGH+  + GI LP GSDKL+S S D 
Sbjct: 150 VCNFWKDGNCKKGEKCQFLHSWSCFPGLAMVAALEGHKNDIKGIALPQGSDKLFSVSGDG 209

Query: 173 TVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQV 232
           T+ +WDC SGQC   INL  E G +ISEGPW+F+G+ N VKA+N Q + D+ L G VGQV
Sbjct: 210 TLLIWDCNSGQCVRSINLQAEAGSLISEGPWVFLGLPNAVKAFNVQNSKDVHLEGVVGQV 269

Query: 233 YAMAVGNDLLFAGTQDGAILAWK-FNVTTNCFEPAASLKVH 272
           +AM   N +LFAGT  G+IL WK  +  ++ F+   SL+ H
Sbjct: 270 HAMTAANGMLFAGTSSGSILVWKATDSESDPFKYLTSLEGH 310

Arabidopsis thaliana (taxid: 3702)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 74/178 (41%), Gaps = 32/178 (17%)

Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS------- 181
           K +H W V  G +L T LEGH   V  +        L SGS D TVR+WD A+       
Sbjct: 481 KLIHVWDVASGDELHT-LEGHTDWVRAVAFSPDGALLASGSDDATVRLWDVAAAEERAVF 539

Query: 182 -GQCAGVINLG-GEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLS-LSGPVGQVYAMAVG 238
            G    V+++     G M++ G           + WN  T T+ + L G    VYA+A  
Sbjct: 540 EGHTHYVLDIAFSPDGSMVASG-----SRDGTARLWNVATGTEHAVLKGHTDYVYAVAFS 594

Query: 239 ND--LLFAGTQDGAILAWKF--------------NVTTNCFEPAASLKVHTDSNRAHF 280
            D  ++ +G++DG I  W                NV +  F P  S+ VH   +  H 
Sbjct: 595 PDGSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHGSDSTVHL 652

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q969H0|FBXW7_HUMAN F-box/WD repeat-containing protein 7 OS=Homo sapiens GN=FBXW7 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 9/145 (6%)

Query: 123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182
           + G   + L  W    G + +  L GH   V  + L     ++ SGS+D T+RVWD  +G
Sbjct: 435 ISGSTDRTLKVWNAETG-ECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETG 491

Query: 183 QCAGVINLG--GEVGCMISEGPWIFIGVTNF-VKAWNTQTNTDL-SLSGPVGQVYAMAVG 238
           QC  V+ +G    V C+  +G  +  G  +F VK W+ +T T L +L G   +VY++   
Sbjct: 492 QCLHVL-MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD 550

Query: 239 NDLLFAGTQDGAILAWKFNVTTNCF 263
              + +G+ D +I  W    T NC 
Sbjct: 551 GIHVVSGSLDTSIRVWDVE-TGNCI 574

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. Involved in the degradation of cyclin-E, MYC, NOTCH1 released notch intracellular domain (NICD), and probably PSEN1.

Homo sapiens (taxid: 9606)

>sp|Q8VBV4|FBXW7_MOUSE F-box/WD repeat-containing protein 7 OS=Mus musculus GN=Fbxw7 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 8/122 (6%)

Query: 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG--GEVGCMISEGPW 203
           L GH   V  + L     ++ SGS+D T+RVWD  +GQC  V+ +G    V C+  +G  
Sbjct: 379 LYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQYDGRR 435

Query: 204 IFIGVTNF-VKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTN 261
           +  G  +F VK W+ +T T L +L G   +VY++      + +G+ D +I  W    T N
Sbjct: 436 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE-TGN 494

Query: 262 CF 263
           C 
Sbjct: 495 CI 496

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. Involved in the degradation of cyclin-E, MYC, NOTCH1 released notch intracellular domain (NICD), and probably PSEN1.

Mus musculus (taxid: 10090)

>sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1

 Score = 54.7 bits (130), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 9/144 (6%)

Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K +  W V  G K++  L+GH++ V G++    S+ + SGS DE VR+WD  +G+C  +I
Sbjct: 110 KTIKIWDVESG-KMVKTLKGHKEYVFGVSFNPQSNLIVSGSFDENVRIWDVNTGECTKMI 168

Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
           +   +    +    +G  +  G  +  V+ W+T T    NT  +  G        +    
Sbjct: 169 SAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPNGK 228

Query: 241 LLFAGTQDGAILAWKFNVTTNCFE 264
            + AGT D  +  W +N    C +
Sbjct: 229 FVLAGTLDNTLRLWSYNNNKKCLK 252

Dictyostelium discoideum (taxid: 44689)

>sp|Q54QU5|WDR89_DICDI WD repeat-containing protein 89 homolog OS=Dictyostelium discoideum GN=wdr89 PE=4 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 5/120 (4%)

Query: 142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEG 201
           +L  L GH+  ++       ++ L S S D+TV++WD  +GQC+  IN  GE+  +   G
Sbjct: 59  ILNVLSGHKDAINETKFIENTNTLLSCSSDKTVKIWDTKTGQCSQTINQQGEIFSIDLNG 118

Query: 202 PWIFIGVTNFVKAWNTQTNT-----DLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKF 256
             + +GV + V  +N  T       D S +  V +V    +  + L + + DG I  +  
Sbjct: 119 DILAMGVGSMVVLYNLSTKKMIRKFDCSHTEDVTRVRFHPIDKNKLVSCSVDGLICMYDL 178

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
297799450	667	hypothetical protein ARALYDRAFT_329122 [	0.844	0.389	0.622	2e-95
2980806	668	putative protein [Arabidopsis thaliana]	0.844	0.389	0.610	1e-94
30686888	430	zinc finger CCCH domain-containing prote	0.844	0.604	0.610	3e-94
224122464	452	predicted protein [Populus trichocarpa]	0.876	0.597	0.628	6e-94
225455491	442	PREDICTED: zinc finger CCCH domain-conta	0.837	0.583	0.618	4e-93
255539579	445	F-box and wd40 domain protein, putative	0.853	0.591	0.631	2e-92
15242242	437	zinc finger CCCH domain-containing prote	0.870	0.613	0.594	2e-91
79330593	443	zinc finger CCCH domain-containing prote	0.870	0.604	0.594	2e-91
356559882	427	PREDICTED: zinc finger CCCH domain-conta	0.860	0.620	0.595	5e-90
356530911	426	PREDICTED: zinc finger CCCH domain-conta	0.860	0.622	0.587	6e-90

>gi|297799450|ref|XP_002867609.1| hypothetical protein ARALYDRAFT_329122 [Arabidopsis lyrata subsp. lyrata] gi|297313445|gb|EFH43868.1| hypothetical protein ARALYDRAFT_329122 [Arabidopsis lyrata subsp. lyrata]

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 173/278 (62%), Positives = 207/278 (74%), Gaps = 18/278 (6%)

Query: 1   MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPL 60
           MD D +GGNKRVF RLGGG          T D+ QKVC +WRAG+CNR+PCPYLHRELP 
Sbjct: 1   MDLDMNGGNKRVFQRLGGGSNR------PTTDSNQKVCFHWRAGRCNRYPCPYLHRELPG 54

Query: 61  P---PAATANGAAAKR-FANNTWGRNNNFNNHSNNY-RAGNSKNSNINNRAVIKTDILCR 115
           P   P++T    A +  FA  +  R   F+  +NN+ R G        NR V KT+ LC+
Sbjct: 55  PAPGPSSTNKRVADESGFAGPSHRRGPGFSGTANNWGRFGG-------NRTVTKTEKLCK 107

Query: 116 NWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVR 175
            WV GNC YG+KC++LH W+ GD F LLTQL+GHQKV++GI LPSGSDKLY+ SKDETVR
Sbjct: 108 FWVDGNCPYGDKCRYLHCWSNGDSFSLLTQLDGHQKVITGIALPSGSDKLYTASKDETVR 167

Query: 176 VWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAM 235
           +WDCASGQC GV+NLGGEVGCMISEGPW+ +G+ N VKAWN Q N DLSL+GPVGQVY++
Sbjct: 168 IWDCASGQCTGVLNLGGEVGCMISEGPWLLVGMPNLVKAWNIQNNVDLSLTGPVGQVYSL 227

Query: 236 AVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT 273
            VG DLLFAGTQDG+IL WK+N TT+CF+PAASL  HT
Sbjct: 228 VVGTDLLFAGTQDGSILVWKYNSTTSCFDPAASLMGHT 265

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2980806|emb|CAA18182.1| putative protein [Arabidopsis thaliana]

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 171/280 (61%), Positives = 206/280 (73%), Gaps = 20/280 (7%)

Query: 1   MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPL 60
           MD D +GGNKRVF RLGGG          T D+ QKVC +WRAG+CNR+PCPYLHRELP 
Sbjct: 1   MDLDMNGGNKRVFQRLGGGSNR------PTTDSNQKVCFHWRAGRCNRYPCPYLHRELPG 54

Query: 61  PPAATANGAAAKR------FANNTWGRNNNFNNHSNNY-RAGNSKNSNINNRAVIKTDIL 113
           P +     ++ KR      FA  +  R   F+  +NN+ R G        NR V KT+ L
Sbjct: 55  PGSGPVAASSNKRVADESGFAGPSHRRGPGFSGTANNWGRFGG-------NRTVTKTEKL 107

Query: 114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET 173
           C+ WV GNC YG+KC++LH W+ GD F LLTQL+GHQKVV+GI LPSGSDKLY+ SKDET
Sbjct: 108 CKFWVDGNCPYGDKCRYLHCWSKGDSFSLLTQLDGHQKVVTGIALPSGSDKLYTASKDET 167

Query: 174 VRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVY 233
           VR+WDCASGQC GV+NLGGEVGC+ISEGPW+ +G+ N VKAWN Q N DLSL+GPVGQVY
Sbjct: 168 VRIWDCASGQCTGVLNLGGEVGCIISEGPWLLVGMPNLVKAWNIQNNADLSLNGPVGQVY 227

Query: 234 AMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT 273
           ++ VG DLLFAGTQDG+IL W++N TT+CF+PAASL  HT
Sbjct: 228 SLVVGTDLLFAGTQDGSILVWRYNSTTSCFDPAASLLGHT 267

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686888|ref|NP_194274.2| zinc finger CCCH domain-containing protein 48 [Arabidopsis thaliana] gi|75334157|sp|Q9FNZ2.1|C3H48_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 48; Short=AtC3H48; AltName: Full=Zinc finger CCCH domain and WD40 repeat-containing protein 1 gi|12057164|emb|CAC19847.1| zfwd1 protein [Arabidopsis thaliana] gi|109946599|gb|ABG48478.1| At4g25440 [Arabidopsis thaliana] gi|332659660|gb|AEE85060.1| zinc finger CCCH domain-containing protein 48 [Arabidopsis thaliana]

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 171/280 (61%), Positives = 206/280 (73%), Gaps = 20/280 (7%)

Query: 1   MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPL 60
           MD D +GGNKRVF RLGGG          T D+ QKVC +WRAG+CNR+PCPYLHRELP 
Sbjct: 1   MDLDMNGGNKRVFQRLGGGSNR------PTTDSNQKVCFHWRAGRCNRYPCPYLHRELPG 54

Query: 61  PPAATANGAAAKR------FANNTWGRNNNFNNHSNNY-RAGNSKNSNINNRAVIKTDIL 113
           P +     ++ KR      FA  +  R   F+  +NN+ R G        NR V KT+ L
Sbjct: 55  PGSGPVAASSNKRVADESGFAGPSHRRGPGFSGTANNWGRFGG-------NRTVTKTEKL 107

Query: 114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET 173
           C+ WV GNC YG+KC++LH W+ GD F LLTQL+GHQKVV+GI LPSGSDKLY+ SKDET
Sbjct: 108 CKFWVDGNCPYGDKCRYLHCWSKGDSFSLLTQLDGHQKVVTGIALPSGSDKLYTASKDET 167

Query: 174 VRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVY 233
           VR+WDCASGQC GV+NLGGEVGC+ISEGPW+ +G+ N VKAWN Q N DLSL+GPVGQVY
Sbjct: 168 VRIWDCASGQCTGVLNLGGEVGCIISEGPWLLVGMPNLVKAWNIQNNADLSLNGPVGQVY 227

Query: 234 AMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT 273
           ++ VG DLLFAGTQDG+IL W++N TT+CF+PAASL  HT
Sbjct: 228 SLVVGTDLLFAGTQDGSILVWRYNSTTSCFDPAASLLGHT 267

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122464|ref|XP_002318843.1| predicted protein [Populus trichocarpa] gi|222859516|gb|EEE97063.1| predicted protein [Populus trichocarpa]

 Score =  350 bits (897), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 183/291 (62%), Positives = 212/291 (72%), Gaps = 21/291 (7%)

Query: 1   MDFDAHGGN-----KRVFHRLGGGGG--DGGGGGLSTADTRQKVCNYWRAGKCNRFPCPY 53
           MD D +GGN     KRVFHRLGGG    D            QKVC +WRAGKCNRFPCP+
Sbjct: 1   MDLDYNGGNTTNTNKRVFHRLGGGKSVNDTSNQHNHQHQQNQKVCYHWRAGKCNRFPCPF 60

Query: 54  LHRELPLPPA-ATANGAA-----AKR-FANNTW----GRNNNFNNHSNNY-RAGNSKNSN 101
           LHRELP PP  A+ NG       AKR FA N      GR    +N+SN++ R GN    +
Sbjct: 61  LHRELPAPPPHASVNGGGGGGGGAKRGFAGNDSSSFSGRRGGNSNYSNSWGRFGN--KGD 118

Query: 102 INNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG 161
           +     +  + +C  WVQGNC +G+KC++LHSW++GDGF L+TQLEGHQKV+SGI LPSG
Sbjct: 119 VRGVKRVSVEKVCNFWVQGNCSFGDKCRYLHSWSLGDGFSLVTQLEGHQKVISGIALPSG 178

Query: 162 SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNT 221
           SDKLY+GSKDETVRVWDC SGQC GV+NLGGEVGCMISEGPWIF+G+ N VKAWNTQTN 
Sbjct: 179 SDKLYTGSKDETVRVWDCQSGQCTGVVNLGGEVGCMISEGPWIFVGLPNVVKAWNTQTNA 238

Query: 222 DLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVH 272
           DLSL+GP+GQVYA+ VGNDLLFAGTQDG+IL WKFN  T  FEPA SLK H
Sbjct: 239 DLSLNGPIGQVYALVVGNDLLFAGTQDGSILVWKFNAATYNFEPAVSLKDH 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455491|ref|XP_002280396.1| PREDICTED: zinc finger CCCH domain-containing protein 48 [Vitis vinifera] gi|297741123|emb|CBI31854.3| unnamed protein product [Vitis vinifera]

 Score =  347 bits (890), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 185/299 (61%), Positives = 210/299 (70%), Gaps = 41/299 (13%)

Query: 1   MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPL 60
           MD D HG NKRVF RLG     G          + KVC +WRAG+CN+FPCPYLHRELP 
Sbjct: 1   MDVDEHG-NKRVFQRLGASNDSG---------KQHKVCYHWRAGRCNKFPCPYLHRELPA 50

Query: 61  PPAA-----TANGAAAKR----------FA--------NNTWGRNNNFNNHSNNYRAGN- 96
           PP        +NG+++KR          F+        N TWGR +          AGN 
Sbjct: 51  PPPQQHQPFISNGSSSKRPNQGVHDDRSFSGARRSPNFNPTWGRVHGAG-------AGNR 103

Query: 97  SKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGI 156
           ++ S   NR   K + LC  W+QGNC YGEKCKFLHSW+VGD F  LTQLEGHQKVVSGI
Sbjct: 104 AQGSGAGNRVFRKIEKLCNYWLQGNCSYGEKCKFLHSWSVGDCFSSLTQLEGHQKVVSGI 163

Query: 157 TLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWN 216
            LPSGSDKLY+GSKDETVR+WDC SGQC GV+NLGGEVGCMISEGPW+F+G+ N VKAW+
Sbjct: 164 ALPSGSDKLYTGSKDETVRIWDCQSGQCTGVVNLGGEVGCMISEGPWLFVGIPNVVKAWH 223

Query: 217 TQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDS 275
           TQ NT+LSLSGP GQVYA+ VGNDLLFAG QDGAILAWKFN  +NCFEPAASLK HT S
Sbjct: 224 TQNNTELSLSGPTGQVYALVVGNDLLFAGVQDGAILAWKFNAVSNCFEPAASLKGHTQS 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539579|ref|XP_002510854.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223549969|gb|EEF51456.1| F-box and wd40 domain protein, putative [Ricinus communis]

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 185/293 (63%), Positives = 212/293 (72%), Gaps = 30/293 (10%)

Query: 1   MDFDAHGGNK---RVFHRLGGGGGDGGGGGLSTADTRQ-KVCNYWRAGKCNRFPCPYLHR 56
           MD DA GGN    RVF+RLGG          ST D RQ KVC++WRAG+CNRFPCPYLHR
Sbjct: 1   MDLDAQGGNTNSNRVFNRLGGAQLSS-----STNDPRQQKVCHHWRAGRCNRFPCPYLHR 55

Query: 57  ELPLPPAATANG--------AAAKRFANNTWG--------RNNNFNNHSNNYRAGNSKNS 100
           ELP PP    +         A +KR  +N  G        R+ NFNN S+  R GN+   
Sbjct: 56  ELPPPPPPHGSNGHSSSNNNAPSKRGFSNDSGFSGPSGSRRSGNFNNASSWGRVGNN--- 112

Query: 101 NINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS 160
             +N+ + KT+ +C  WVQG C YG+KC+FLHSW +G+ F LLTQL+GHQKVV+GI LPS
Sbjct: 113 --SNKVLRKTEKVCNFWVQGKCSYGDKCRFLHSWNLGESFSLLTQLDGHQKVVTGIALPS 170

Query: 161 GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN 220
           GSDKLY+GSKDETVRVWDC SGQC  VI LGGEVGCMISEGPWIF+G+ N VKAWNTQTN
Sbjct: 171 GSDKLYTGSKDETVRVWDCQSGQCMAVIQLGGEVGCMISEGPWIFVGIPNVVKAWNTQTN 230

Query: 221 TDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT 273
           TDLSL+GPVGQVYA+ VGNDLLFAGTQDGAIL WK+N  T  FEPAASL  HT
Sbjct: 231 TDLSLTGPVGQVYALVVGNDLLFAGTQDGAILVWKYNAATFNFEPAASLPGHT 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242242|ref|NP_200011.1| zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana] gi|10177733|dbj|BAB11046.1| unnamed protein product [Arabidopsis thaliana] gi|332008771|gb|AED96154.1| zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana]

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 166/279 (59%), Positives = 204/279 (73%), Gaps = 11/279 (3%)

Query: 1   MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPL 60
           MDFD +GGNKRVF+RLGGGGG      ++  DTRQKVC +WRAG+CNR PCPYLHRELP 
Sbjct: 1   MDFDLNGGNKRVFNRLGGGGGSTRP--MAPTDTRQKVCFHWRAGRCNRSPCPYLHRELP- 57

Query: 61  PPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNIN------NRAVIKTDILC 114
                        + N      + F   S+    G + NS+ +      NR V KT+ +C
Sbjct: 58  --GPGPGQGQGPGYTNKRVAEESGFAGPSHRRGPGFNGNSSSSWGRFGGNRTVTKTEKVC 115

Query: 115 RNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETV 174
             WV GNC YG+KC++LH W+ G+ F LLTQL+GH+K+VSGI LPSGSDKLY+GSKDET+
Sbjct: 116 NFWVDGNCTYGDKCRYLHCWSKGESFALLTQLDGHEKLVSGIALPSGSDKLYTGSKDETL 175

Query: 175 RVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYA 234
           RVWDCASGQC GV+ LGGE+GC++SEGPW+ +G+ N VKAWN +TN D SLSGPVGQVY+
Sbjct: 176 RVWDCASGQCTGVLKLGGEIGCVLSEGPWLLVGMPNLVKAWNIETNADQSLSGPVGQVYS 235

Query: 235 MAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT 273
           + VG DLLFAGTQDG+ILAW++N  TNCFEP+ASL  HT
Sbjct: 236 LVVGTDLLFAGTQDGSILAWRYNAATNCFEPSASLTGHT 274

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79330593|ref|NP_001032059.1| zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana] gi|75334156|sp|Q9FNZ1.1|C3H63_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 63; Short=AtC3H63; AltName: Full=Zinc finger CCCH domain and WD40 repeat-containing protein 2 gi|12057166|emb|CAC19848.1| zfwd2 protein [Arabidopsis thaliana] gi|332008772|gb|AED96155.1| zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana]

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 166/279 (59%), Positives = 204/279 (73%), Gaps = 11/279 (3%)

Query: 1   MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPL 60
           MDFD +GGNKRVF+RLGGGGG      ++  DTRQKVC +WRAG+CNR PCPYLHRELP 
Sbjct: 1   MDFDLNGGNKRVFNRLGGGGGSTRP--MAPTDTRQKVCFHWRAGRCNRSPCPYLHRELP- 57

Query: 61  PPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNIN------NRAVIKTDILC 114
                        + N      + F   S+    G + NS+ +      NR V KT+ +C
Sbjct: 58  --GPGPGQGQGPGYTNKRVAEESGFAGPSHRRGPGFNGNSSSSWGRFGGNRTVTKTEKVC 115

Query: 115 RNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETV 174
             WV GNC YG+KC++LH W+ G+ F LLTQL+GH+K+VSGI LPSGSDKLY+GSKDET+
Sbjct: 116 NFWVDGNCTYGDKCRYLHCWSKGESFALLTQLDGHEKLVSGIALPSGSDKLYTGSKDETL 175

Query: 175 RVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYA 234
           RVWDCASGQC GV+ LGGE+GC++SEGPW+ +G+ N VKAWN +TN D SLSGPVGQVY+
Sbjct: 176 RVWDCASGQCTGVLKLGGEIGCVLSEGPWLLVGMPNLVKAWNIETNADQSLSGPVGQVYS 235

Query: 235 MAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT 273
           + VG DLLFAGTQDG+ILAW++N  TNCFEP+ASL  HT
Sbjct: 236 LVVGTDLLFAGTQDGSILAWRYNAATNCFEPSASLTGHT 274

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559882|ref|XP_003548225.1| PREDICTED: zinc finger CCCH domain-containing protein 48-like [Glycine max]

 Score =  337 bits (863), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 174/292 (59%), Positives = 208/292 (71%), Gaps = 27/292 (9%)

Query: 3   FDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPP 62
            D  GGNKRV++RLGG                QKVC +W+AGKCNR+PCP+LH ELP   
Sbjct: 1   MDVDGGNKRVYNRLGGDA------------KHQKVCFHWQAGKCNRYPCPFLHSELP-AN 47

Query: 63  AATANGAAAKRFANNTW----GRNNNFNN--HSNNYRAGNSKNSNINNRAVIKTDILCRN 116
           +  ANGA++KR  +N+      R+ +FNN       R G    +      V+K + +C  
Sbjct: 48  SHHANGASSKRAYDNSGFSGPRRSPSFNNTWGRGGSRGGGGAGAGAGRGVVVKAEKVCNY 107

Query: 117 WVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRV 176
           W+QGNC YGE+CKFLH+W+VGDGF LLTQLEGHQK VS I  PSGSDKLY+GS DET R+
Sbjct: 108 WIQGNCSYGERCKFLHTWSVGDGFSLLTQLEGHQKAVSAIAFPSGSDKLYTGSTDETARI 167

Query: 177 WDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMA 236
           WDC SG+C GVINLGGEVGCMISEGPW+F+G+ NFVKAWNTQ  ++LSL+GPVGQVYA+ 
Sbjct: 168 WDCQSGKCVGVINLGGEVGCMISEGPWVFVGIPNFVKAWNTQNLSELSLNGPVGQVYALV 227

Query: 237 VGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRAHFSRDVTSLL 288
           V ND+LFAGTQDG+ILAWKFNV TNCFEPAASLK H        SR V SL+
Sbjct: 228 VNNDMLFAGTQDGSILAWKFNVATNCFEPAASLKGH--------SRGVVSLV 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530911|ref|XP_003534022.1| PREDICTED: zinc finger CCCH domain-containing protein 48-like [Glycine max]

 Score =  336 bits (862), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 171/291 (58%), Positives = 203/291 (69%), Gaps = 26/291 (8%)

Query: 3   FDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPP 62
            D  GGNKRV++RLGG                QKVC +W+AGKCNR+PCP+LH E P   
Sbjct: 1   MDVDGGNKRVYNRLGGDA------------KHQKVCYHWQAGKCNRYPCPFLHSESP-AN 47

Query: 63  AATANGAAAKRFANNTW----GRNNNFNNH-SNNYRAGNSKNSNINNRAVIKTDILCRNW 117
           +  ANG ++KR  +N+      R+ NFNN        G           V+K + +C  W
Sbjct: 48  SHHANGTSSKRTYDNSGFSGPRRSPNFNNTWGRGGGRGGGGGGGAGRGVVVKAEKVCNYW 107

Query: 118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177
           +QG+C YGE+CKFLHSW+VGDGF LLTQLEGHQK VS I  PSGSDKLY+GS DET R+W
Sbjct: 108 IQGSCSYGERCKFLHSWSVGDGFSLLTQLEGHQKAVSAIAFPSGSDKLYTGSTDETARIW 167

Query: 178 DCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAV 237
           DC  G+C GVINLGGEVGCMISEGPW+F+G+ NFVKAWNTQ  ++LSL+GPVGQVYA+ V
Sbjct: 168 DCQCGKCVGVINLGGEVGCMISEGPWVFVGIPNFVKAWNTQNLSELSLNGPVGQVYALVV 227

Query: 238 GNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRAHFSRDVTSLL 288
            ND+LFAGTQDG+ILAWKFNV TNCFEPAASLK H        SR V SL+
Sbjct: 228 NNDMLFAGTQDGSILAWKFNVATNCFEPAASLKGH--------SRGVVSLV 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
TAIR|locus:2173103	443	AT5G51980 [Arabidopsis thalian	0.876	0.609	0.581	3.7e-87
TAIR|locus:2131799	430	ZFWD1 "zinc finger WD40 repeat	0.866	0.620	0.582	6e-87
TAIR|locus:2155904	419	AT5G49200 [Arabidopsis thalian	0.522	0.384	0.509	4e-42
TAIR|locus:2164456	472	AT5G40880 [Arabidopsis thalian	0.519	0.338	0.509	6.6e-42
DICTYBASE|DDB_G0287273	335	wdr5 "WD40 repeat-containing p	0.438	0.402	0.277	7.9e-09
UNIPROTKB|F1N9W1	587	FBXW7 "Uncharacterized protein	0.431	0.226	0.316	1e-08
RGD|2321145	588	Fbxw7 "F-box and WD repeat dom	0.431	0.226	0.316	1.1e-08
UNIPROTKB|F1MNN4	627	FBXW7 "Uncharacterized protein	0.431	0.212	0.316	1.2e-08
MGI|MGI:1354695	629	Fbxw7 "F-box and WD-40 domain	0.431	0.211	0.316	1.2e-08
UNIPROTKB|Q969H0	707	FBXW7 "F-box/WD repeat-contain	0.431	0.188	0.316	1.4e-08

TAIR|locus:2173103 AT5G51980 [Arabidopsis thaliana (taxid:3702)]

 Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
 Identities = 161/277 (58%), Positives = 195/277 (70%)

Query:     1 MDFDAHGGNKRVFHRLXXXXXXXXXXXLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPL 60
             MDFD +GGNKRVF+RL           ++  DTRQKVC +WRAG+CNR PCPYLHRELP 
Sbjct:     1 MDFDLNGGNKRVFNRLGGGGGSTRP--MAPTDTRQKVCFHWRAGRCNRSPCPYLHRELPG 58

Query:    61 P-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRAGNSKNS---NINNRAVIKTDILCRN 116
             P P                             +  GNS +S      NR V KT+ +C  
Sbjct:    59 PGPGQGQGPGYTNKRVAEESGFAGPSHRRGPGFN-GNSSSSWGRFGGNRTVTKTEKVCNF 117

Query:   117 WVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRV 176
             WV GNC YG+KC++LH W+ G+ F LLTQL+GH+K+VSGI LPSGSDKLY+GSKDET+RV
Sbjct:   118 WVDGNCTYGDKCRYLHCWSKGESFALLTQLDGHEKLVSGIALPSGSDKLYTGSKDETLRV 177

Query:   177 WDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMA 236
             WDCASGQC GV+ LGGE+GC++SEGPW+ +G+ N VKAWN +TN D SLSGPVGQVY++ 
Sbjct:   178 WDCASGQCTGVLKLGGEIGCVLSEGPWLLVGMPNLVKAWNIETNADQSLSGPVGQVYSLV 237

Query:   237 VGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT 273
             VG DLLFAGTQDG+ILAW++N  TNCFEP+ASL  HT
Sbjct:   238 VGTDLLFAGTQDGSILAWRYNAATNCFEPSASLTGHT 274

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2131799 ZFWD1 "zinc finger WD40 repeat protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
 Identities = 159/273 (58%), Positives = 188/273 (68%)

Query:     1 MDFDAHGGNKRVFHRLXXXXXXXXXXXLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPL 60
             MD D +GGNKRVF RL             T D+ QKVC +WRAG+CNR+PCPYLHRELP 
Sbjct:     1 MDLDMNGGNKRVFQRLGGGSNR------PTTDSNQKVCFHWRAGRCNRYPCPYLHRELPG 54

Query:    61 PPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRAGNSKNSNINNRAVIKTDILCRNWVQG 120
             P                                  N+      NR V KT+ LC+ WV G
Sbjct:    55 PGSGPVAASSNKRVADESGFAGPSHRRGPGFSGTANNWGRFGGNRTVTKTEKLCKFWVDG 114

Query:   121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180
             NC YG+KC++LH W+ GD F LLTQL+GHQKVV+GI LPSGSDKLY+ SKDETVR+WDCA
Sbjct:   115 NCPYGDKCRYLHCWSKGDSFSLLTQLDGHQKVVTGIALPSGSDKLYTASKDETVRIWDCA 174

Query:   181 SGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND 240
             SGQC GV+NLGGEVGC+ISEGPW+ +G+ N VKAWN Q N DLSL+GPVGQVY++ VG D
Sbjct:   175 SGQCTGVLNLGGEVGCIISEGPWLLVGMPNLVKAWNIQNNADLSLNGPVGQVYSLVVGTD 234

Query:   241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT 273
             LLFAGTQDG+IL W++N TT+CF+PAASL  HT
Sbjct:   235 LLFAGTQDGSILVWRYNSTTSCFDPAASLLGHT 267

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2155904 AT5G49200 [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 84/165 (50%), Positives = 109/165 (66%)

Query:   113 LCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE 172
             +C+ W  G C  GE+C+FLHSW+   G  ++  LEGH K + GI LP GSDKL+S S D 
Sbjct:    94 VCKYWKDGKCKRGEQCQFLHSWSCFPGLAMVASLEGHNKELKGIALPEGSDKLFSVSIDG 153

Query:   173 TVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSL--SGPVG 230
             T+RVWDC SGQC   INL  E G +ISEGPW+F+G+ N +KA+N QT+ DL L  +G VG
Sbjct:   154 TLRVWDCNSGQCVHSINLDAEAGSLISEGPWVFLGLPNAIKAFNVQTSQDLHLQAAGVVG 213

Query:   231 QVYAMAVGNDLLFAGTQDGAILAWKFNVTTNC--FEPAASLKVHT 273
             QV AM + N +LFAGT  G+IL WK    +    F+   SL+ H+
Sbjct:   214 QVNAMTIANGMLFAGTSSGSILVWKATTDSESDPFKYLTSLEGHS 258

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2164456 AT5G40880 [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 82/161 (50%), Positives = 107/161 (66%)

Query:   113 LCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE 172
             +C  W  GNC  GEKC+FLHSW+   G  ++  LEGH+  + GI LP GSDKL+S S D 
Sbjct:   150 VCNFWKDGNCKKGEKCQFLHSWSCFPGLAMVAALEGHKNDIKGIALPQGSDKLFSVSGDG 209

Query:   173 TVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQV 232
             T+ +WDC SGQC   INL  E G +ISEGPW+F+G+ N VKA+N Q + D+ L G VGQV
Sbjct:   210 TLLIWDCNSGQCVRSINLQAEAGSLISEGPWVFLGLPNAVKAFNVQNSKDVHLEGVVGQV 269

Query:   233 YAMAVGNDLLFAGTQDGAILAWKFNVT-TNCFEPAASLKVH 272
             +AM   N +LFAGT  G+IL WK   + ++ F+   SL+ H
Sbjct:   270 HAMTAANGMLFAGTSSGSILVWKATDSESDPFKYLTSLEGH 310

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 154 (59.3 bits), Expect = 7.9e-09, P = 7.9e-09
 Identities = 40/144 (27%), Positives = 67/144 (46%)

Query:   129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
             K +  W V  G K++  L+GH++ V G++    S+ + SGS DE VR+WD  +G+C  +I
Sbjct:   110 KTIKIWDVESG-KMVKTLKGHKEYVFGVSFNPQSNLIVSGSFDENVRIWDVNTGECTKMI 168

Query:   189 NLGGE--VGCMIS-EGPWIFIG-VTNFVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
             +   +   G   + +G  +  G     V+ W+T T    NT  +  G        +    
Sbjct:   169 SAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPNGK 228

Query:   241 LLFAGTQDGAILAWKFNVTTNCFE 264
              + AGT D  +  W +N    C +
Sbjct:   229 FVLAGTLDNTLRLWSYNNNKKCLK 252

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1N9W1 FBXW7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 157 (60.3 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 45/142 (31%), Positives = 70/142 (49%)

Query:   125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184
             G   + L  W    G + +  L GH   V  + L     ++ SGS+D T+RVWD  +GQC
Sbjct:   317 GSTDRTLKVWNAETG-ECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQC 373

Query:   185 AGVINLG--GEVGCMISEGPWIFIGVTNF-VKAWNTQTNTDL-SLSGPVGQVYAMAVGND 240
               V+ +G    V C+  +G  +  G  +F VK W+ +T T L +L G   +VY++     
Sbjct:   374 LHVL-MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI 432

Query:   241 LLFAGTQDGAILAWKFNVTTNC 262
              + +G+ D +I  W    T NC
Sbjct:   433 HVVSGSLDTSIRVWDVE-TGNC 453

GO:0001570 "vasculogenesis" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0032876 "negative regulation of DNA endoreduplication" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

GO:0045741 "positive regulation of epidermal growth factor-activated receptor activity" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=IEA

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

RGD|2321145 Fbxw7 "F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 157 (60.3 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 45/142 (31%), Positives = 70/142 (49%)

Query:   125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184
             G   + L  W    G + +  L GH   V  + L     ++ SGS+D T+RVWD  +GQC
Sbjct:   359 GSTDRTLKVWNAETG-ECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQC 415

Query:   185 AGVINLG--GEVGCMISEGPWIFIGVTNF-VKAWNTQTNTDL-SLSGPVGQVYAMAVGND 240
               V+ +G    V C+  +G  +  G  +F VK W+ +T T L +L G   +VY++     
Sbjct:   416 LHVL-MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI 474

Query:   241 LLFAGTQDGAILAWKFNVTTNC 262
              + +G+ D +I  W    T NC
Sbjct:   475 HVVSGSLDTSIRVWDVE-TGNC 495

GO:0001570 "vasculogenesis" evidence=ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005654 "nucleoplasm" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0007062 "sister chromatid cohesion" evidence=ISO

GO:0007219 "Notch signaling pathway" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISO

GO:0030324 "lung development" evidence=ISO

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0032876 "negative regulation of DNA endoreduplication" evidence=ISO

GO:0034644 "cellular response to UV" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045741 "positive regulation of epidermal growth factor-activated receptor activity" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0050821 "protein stabilization" evidence=ISO

GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=ISO

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO

UNIPROTKB|F1MNN4 FBXW7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 157 (60.3 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 45/142 (31%), Positives = 70/142 (49%)

Query:   125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184
             G   + L  W    G + +  L GH   V  + L     ++ SGS+D T+RVWD  +GQC
Sbjct:   357 GSTDRTLKVWNAETG-ECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQC 413

Query:   185 AGVINLG--GEVGCMISEGPWIFIGVTNF-VKAWNTQTNTDL-SLSGPVGQVYAMAVGND 240
               V+ +G    V C+  +G  +  G  +F VK W+ +T T L +L G   +VY++     
Sbjct:   414 LHVL-MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI 472

Query:   241 LLFAGTQDGAILAWKFNVTTNC 262
              + +G+ D +I  W    T NC
Sbjct:   473 HVVSGSLDTSIRVWDVE-TGNC 493

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0045741 "positive regulation of epidermal growth factor-activated receptor activity" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

GO:0032876 "negative regulation of DNA endoreduplication" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

MGI|MGI:1354695 Fbxw7 "F-box and WD-40 domain protein 7" [Mus musculus (taxid:10090)]

 Score = 157 (60.3 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 45/142 (31%), Positives = 70/142 (49%)

Query:   125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184
             G   + L  W    G + +  L GH   V  + L     ++ SGS+D T+RVWD  +GQC
Sbjct:   359 GSTDRTLKVWNAETG-ECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQC 415

Query:   185 AGVINLG--GEVGCMISEGPWIFIGVTNF-VKAWNTQTNTDL-SLSGPVGQVYAMAVGND 240
               V+ +G    V C+  +G  +  G  +F VK W+ +T T L +L G   +VY++     
Sbjct:   416 LHVL-MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI 474

Query:   241 LLFAGTQDGAILAWKFNVTTNC 262
              + +G+ D +I  W    T NC
Sbjct:   475 HVVSGSLDTSIRVWDVE-TGNC 495

GO:0001570 "vasculogenesis" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA;TAS

GO:0005654 "nucleoplasm" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0007062 "sister chromatid cohesion" evidence=ISO

GO:0007219 "Notch signaling pathway" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=ISO;ISA

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISO

GO:0030324 "lung development" evidence=IMP

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0032876 "negative regulation of DNA endoreduplication" evidence=ISO

GO:0034644 "cellular response to UV" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045741 "positive regulation of epidermal growth factor-activated receptor activity" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0050821 "protein stabilization" evidence=ISO

GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=ISO

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO

UNIPROTKB|Q969H0 FBXW7 "F-box/WD repeat-containing protein 7" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 45/142 (31%), Positives = 70/142 (49%)

Query:   125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184
             G   + L  W    G + +  L GH   V  + L     ++ SGS+D T+RVWD  +GQC
Sbjct:   437 GSTDRTLKVWNAETG-ECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQC 493

Query:   185 AGVINLG--GEVGCMISEGPWIFIGVTNF-VKAWNTQTNTDL-SLSGPVGQVYAMAVGND 240
               V+ +G    V C+  +G  +  G  +F VK W+ +T T L +L G   +VY++     
Sbjct:   494 LHVL-MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI 552

Query:   241 LLFAGTQDGAILAWKFNVTTNC 262
              + +G+ D +I  W    T NC
Sbjct:   553 HVVSGSLDTSIRVWDVE-TGNC 573

GO:0019048 "virus-host interaction" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=IDA;TAS

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IDA

GO:0034644 "cellular response to UV" evidence=IDA

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0032876 "negative regulation of DNA endoreduplication" evidence=IMP

GO:0007062 "sister chromatid cohesion" evidence=IMP

GO:0045741 "positive regulation of epidermal growth factor-activated receptor activity" evidence=IDA

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0050821 "protein stabilization" evidence=IDA

GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=IMP

GO:2000346 "negative regulation of hepatocyte proliferation" evidence=ISS

GO:0055088 "lipid homeostasis" evidence=ISS

GO:0032880 "regulation of protein localization" evidence=ISS

GO:0010883 "regulation of lipid storage" evidence=ISS

GO:0010868 "negative regulation of triglyceride biosynthetic process" evidence=ISS

GO:0001944 "vasculature development" evidence=TAS

GO:0045746 "negative regulation of Notch signaling pathway" evidence=ISS

GO:2000639 "negative regulation of SREBP signaling pathway" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FNZ2	C3H48_ARATH	No assigned EC number	0.6107	0.8441	0.6046	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	308
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-06
smart00356	27	smart00356, ZnF_C3H1, zinc finger	6e-05
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 12/157 (7%)

Query: 142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC--AGVINLGGEVGCM-I 198
           L   L+GH   V+ +        L +GS D T++VWD  +G+       + G        
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 199 SEGPWIFI-GVTNFVKAWNTQTNTDLS-LSGPVGQVYAMAVGND--LLFAGTQDGAILAW 254
           ++G ++        ++ W+ +T   +  L+G    V ++A   D  +L + ++D  I  W
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 255 KFNVTTNCFEPAASLKVHTDS-NRAHFSRDVTSLLGS 290
                        +L+ HTD  N   FS D T +  S
Sbjct: 121 DVETGKCLT----TLRGHTDWVNSVAFSPDGTFVASS 153

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 7/126 (5%)

Query: 137 GDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN--LGGEV 194
               K +  L GH   V+ +      +KL S S D T+++WD ++G+C G +     G  
Sbjct: 164 LRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN 223

Query: 195 GCMISEGPWIFIGVT--NFVKAWNTQT-NTDLSLSGPVGQVYAMAVGND--LLFAGTQDG 249
               S   ++    +    ++ W+ +T     +LSG    V ++A   D   L +G+ DG
Sbjct: 224 SVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283

Query: 250 AILAWK 255
            I  W 
Sbjct: 284 TIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.5 bits (132), Expect = 1e-08
 Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 9/145 (6%)

Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
             +  W +     LL  L GH   V  +        L SGS D TVR+WD  +G+    +
Sbjct: 263 GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322

Query: 189 NL---GGEVGCMI--SEGPWIFIGVT--NFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDL 241
            L    G V  +    +G  +  G +    ++ W+ +T   L        V +++   D 
Sbjct: 323 TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDG 382

Query: 242 LFAGT--QDGAILAWKFNVTTNCFE 264
               +   DG +  W  +  +    
Sbjct: 383 RVVSSGSTDGTVRLWDLSTGSLLRN 407

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 13/167 (7%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN--LG 191
           W +  G +LL  L+GH   V  +   +    L SGS D+T+R+WD  +G+C   +     
Sbjct: 36  WDLETG-ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS 94

Query: 192 GEVGCMIS-EGPWIF-IGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAV--GNDLLFAGT 246
                  S +G  +        +K W+ +T   L +L G    V ++A       + + +
Sbjct: 95  YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS 154

Query: 247 QDGAILAWKFNVTTNCFEPAASLKVHTDS-NRAHFSRDVTSLLGSVS 292
           QDG I  W         +  A+L  HT   N   FS D   LL S S
Sbjct: 155 QDGTIKLWDL----RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 12/162 (7%)

Query: 141 KLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVI---NLGGEVGC 196
           K L+ L GH   VS +   P G   + SGS D T+R+WD ++G+        +    V  
Sbjct: 189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS 248

Query: 197 MISEGPWIF-IGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAI 251
              +G  +        ++ W+ ++++ L  +LSG    V ++A   D  LL +G+ DG +
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308

Query: 252 LAWKFNVTTNCFEPAASLKVHTDS-NRAHFSRDVTSLLGSVS 292
             W  ++ T     + +LK H    +   FS D + L+   S
Sbjct: 309 RLW--DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS 348

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 37/138 (26%), Positives = 53/138 (38%), Gaps = 12/138 (8%)

Query: 131 LHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190
           +  W +  G  L + L GH   V     P GS  L SGS D T+R+WD  S         
Sbjct: 223 IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLLRTLS 281

Query: 191 G--GEVGCMI---SEGPWIFIGVTNFVKAWNTQTNTD---LSLSGPVGQVYAMAV---GN 239
           G    V  +                 V+ W+ +T      L+L G  G V +++    G+
Sbjct: 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGS 341

Query: 240 DLLFAGTQDGAILAWKFN 257
            L+  G+ DG I  W   
Sbjct: 342 LLVSGGSDDGTIRLWDLR 359

Length = 466

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 39.1 bits (92), Expect = 6e-05
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 113 LCRNWVQGNCMYGEKCKFLHS 133
           LC+ + +G C  G++CKF H 
Sbjct: 6   LCKFFKRGYCPRGDRCKFAHP 26

Length = 27

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178
            +LL  L+GH   V+ +        L SGS D T+++WD
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 18/39 (46%), Positives = 22/39 (56%)

Query: 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178
            KLL  L+GH   V+ +      + L SGS D TVRVWD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 47/226 (20%), Positives = 81/226 (35%), Gaps = 26/226 (11%)

Query: 83  NNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKL 142
           +N +  S N      K+    +   +    L  +      +       +    +      
Sbjct: 3   DNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLL-- 60

Query: 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISE-- 200
              L GH+  ++ I      + L SGS D T+++WD  +G+   + +L G     +S+  
Sbjct: 61  ---LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLA 116

Query: 201 -----GPWIFIGVTNF---VKAWN--TQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQ 247
                G  I +  ++    VK W+  T      +L G    V ++A   D   L    + 
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSL 176

Query: 248 DGAILAWKFNVTTNCFEPAASLKVHTDS-NRAHFSRDVTSLLGSVS 292
           DG I  W            ++L  HTD  +   FS D   L+ S S
Sbjct: 177 DGTIKLWDLRTGKPL----STLAGHTDPVSSLAFSPDGGLLIASGS 218

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	308
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.98
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.98
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
PTZ00421	493	coronin; Provisional	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG0296	399	consensus Angio-associated migratory cell protein	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.93
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.93
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.92
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.92
KOG0643	327	consensus Translation initiation factor 3, subunit	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.91
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.91
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.9
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG0641	350	consensus WD40 repeat protein [General function pr	99.88
KOG4328	498	consensus WD40 protein [Function unknown]	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG0646	476	consensus WD40 repeat protein [General function pr	99.87
KOG2055	514	consensus WD40 repeat protein [General function pr	99.87
KOG2096	420	consensus WD40 repeat protein [General function pr	99.87
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.87
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.87
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.87
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.87
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.87
KOG0639	705	consensus Transducin-like enhancer of split protei	99.86
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.86
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.86
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.86
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.86
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.86
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.86
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.85
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.84
KOG2055	514	consensus WD40 repeat protein [General function pr	99.84
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.84
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.84
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.84
KOG1274	933	consensus WD40 repeat protein [General function pr	99.84
KOG2048	691	consensus WD40 repeat protein [General function pr	99.83
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.83
KOG0649	325	consensus WD40 repeat protein [General function pr	99.83
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.83
KOG1273	405	consensus WD40 repeat protein [General function pr	99.83
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.82
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.81
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.81
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.81
KOG1539	910	consensus WD repeat protein [General function pred	99.81
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.8
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.79
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.78
KOG1273	405	consensus WD40 repeat protein [General function pr	99.78
KOG1188	376	consensus WD40 repeat protein [General function pr	99.76
PRK01742	429	tolB translocation protein TolB; Provisional	99.75
KOG4328	498	consensus WD40 protein [Function unknown]	99.75
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.75
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.74
COG2319	466	FOG: WD40 repeat [General function prediction only	99.73
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.73
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.73
KOG1188	376	consensus WD40 repeat protein [General function pr	99.73
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.73
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.72
PRK11028	330	6-phosphogluconolactonase; Provisional	99.71
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.71
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.7
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.69
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.69
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.69
KOG4227	609	consensus WD40 repeat protein [General function pr	99.69
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.68
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.67
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.66
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.66
KOG1963	792	consensus WD40 repeat protein [General function pr	99.66
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.66
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.65
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.64
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.64
PRK03629	429	tolB translocation protein TolB; Provisional	99.62
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.62
PRK11028	330	6-phosphogluconolactonase; Provisional	99.62
COG2319	466	FOG: WD40 repeat [General function prediction only	99.6
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.59
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.59
PRK04922	433	tolB translocation protein TolB; Provisional	99.59
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.59
KOG0649	325	consensus WD40 repeat protein [General function pr	99.58
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.58
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.56
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.56
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.56
KOG2321	703	consensus WD40 repeat protein [General function pr	99.55
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.55
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.52
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.52
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.52
KOG1334	559	consensus WD40 repeat protein [General function pr	99.52
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.52
PRK02889	427	tolB translocation protein TolB; Provisional	99.52
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.5
PRK01742	429	tolB translocation protein TolB; Provisional	99.5
KOG1310	758	consensus WD40 repeat protein [General function pr	99.48
PRK05137	435	tolB translocation protein TolB; Provisional	99.48
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.46
KOG1963	792	consensus WD40 repeat protein [General function pr	99.46
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.46
KOG4227	609	consensus WD40 repeat protein [General function pr	99.45
PRK04922	433	tolB translocation protein TolB; Provisional	99.45
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.43
PRK05137	435	tolB translocation protein TolB; Provisional	99.43
PRK03629	429	tolB translocation protein TolB; Provisional	99.43
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.42
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.4
PRK00178	430	tolB translocation protein TolB; Provisional	99.39
PRK04792	448	tolB translocation protein TolB; Provisional	99.39
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.37
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.35
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.34
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.34
KOG2321	703	consensus WD40 repeat protein [General function pr	99.34
KOG2139	445	consensus WD40 repeat protein [General function pr	99.34
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.33
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.33
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.32
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.31
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.3
KOG1310	758	consensus WD40 repeat protein [General function pr	99.3
KOG4547	541	consensus WD40 repeat-containing protein [General	99.3
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.3
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.3
KOG1334	559	consensus WD40 repeat protein [General function pr	99.3
PRK02889	427	tolB translocation protein TolB; Provisional	99.29
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.29
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.28
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.26
KOG2139	445	consensus WD40 repeat protein [General function pr	99.26
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.23
KOG4547	541	consensus WD40 repeat-containing protein [General	99.22
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.2
PRK00178	430	tolB translocation protein TolB; Provisional	99.2
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.19
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.19
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.16
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.15
PRK01029	428	tolB translocation protein TolB; Provisional	99.15
PRK04792	448	tolB translocation protein TolB; Provisional	99.13
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.11
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.1
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.09
PRK01029	428	tolB translocation protein TolB; Provisional	99.08
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.07
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.06
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.06
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.05
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.03
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.02
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.99
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.99
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.98
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.98
PRK04043	419	tolB translocation protein TolB; Provisional	98.98
KOG2315	566	consensus Predicted translation initiation factor	98.98
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.95
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.95
KOG2695	425	consensus WD40 repeat protein [General function pr	98.93
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.92
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.92
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.91
COG4946	668	Uncharacterized protein related to the periplasmic	98.89
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.89
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.84
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.84
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.83
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.81
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.81
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.8
PRK04043	419	tolB translocation protein TolB; Provisional	98.79
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.78
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.76
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.76
KOG2695	425	consensus WD40 repeat protein [General function pr	98.76
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.74
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.69
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.68
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.59
KOG2315	566	consensus Predicted translation initiation factor	98.57
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.5
KOG2314	698	consensus Translation initiation factor 3, subunit	98.49
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.45
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.4
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.4
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.37
COG4946	668	Uncharacterized protein related to the periplasmic	98.36
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.34
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.3
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.29
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.27
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.25
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.23
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.21
KOG2314	698	consensus Translation initiation factor 3, subunit	98.19
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.15
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.14
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.14
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.13
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.12
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.11
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.11
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.1
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.07
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.05
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.99
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.96
KOG3621	726	consensus WD40 repeat-containing protein [General	97.95
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.93
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.92
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.9
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.87
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.85
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.84
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.83
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.78
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.78
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.73
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.71
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.7
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.69
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.65
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.65
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.63
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.63
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.63
PRK02888	635	nitrous-oxide reductase; Validated	97.6
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.58
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.57
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.57
KOG2395	644	consensus Protein involved in vacuole import and d	97.49
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.27
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.26
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.26
PRK02888	635	nitrous-oxide reductase; Validated	97.16
KOG3621	726	consensus WD40 repeat-containing protein [General	97.14
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.13
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.12
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.11
PHA02713	557	hypothetical protein; Provisional	97.11
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.1
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.08
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.04
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.01
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.91
COG3391	381	Uncharacterized conserved protein [Function unknow	96.89
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.89
KOG1008	783	consensus Uncharacterized conserved protein, conta	96.87
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.79
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.78
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.7
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.63
PHA03098	534	kelch-like protein; Provisional	96.63
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	96.62
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.51
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.47
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.44
PHA02713	557	hypothetical protein; Provisional	96.37
KOG2444	238	consensus WD40 repeat protein [General function pr	96.24
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.18
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.15
KOG2395	644	consensus Protein involved in vacuole import and d	96.07
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.02
KOG2444	238	consensus WD40 repeat protein [General function pr	96.01
PHA03098	534	kelch-like protein; Provisional	95.99
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.9
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.84
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.66
COG3391	381	Uncharacterized conserved protein [Function unknow	95.58
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.52
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.49
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.46
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.46
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.34
COG5167	776	VID27 Protein involved in vacuole import and degra	95.19
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.88
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.83
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.64
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.61
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.43
PHA02790	480	Kelch-like protein; Provisional	94.37
PRK13616	591	lipoprotein LpqB; Provisional	94.27
PHA02790	480	Kelch-like protein; Provisional	94.22
PRK13616	591	lipoprotein LpqB; Provisional	94.19
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.15
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	93.99
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.64
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.58
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.43
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.42
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	93.35
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.1
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.6
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	92.38
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	91.91
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	91.85
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.68
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	91.5
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.4
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.38
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	91.36
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	91.32
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	91.31
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.06
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	90.78
COG1520	370	FOG: WD40-like repeat [Function unknown]	90.63
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	90.2
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	90.18
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.17
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	89.95
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	89.83
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	89.82
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	89.76
COG1520	370	FOG: WD40-like repeat [Function unknown]	88.68
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.34
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.73
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	87.64
COG5167	776	VID27 Protein involved in vacuole import and degra	87.49
PF12768	281	Rax2: Cortical protein marker for cell polarity	86.75
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	86.36
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	86.23
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	86.09
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	85.26
COG4590	733	ABC-type uncharacterized transport system, permeas	85.04
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	84.93
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	84.92
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	84.76
KOG2247	615	consensus WD40 repeat-containing protein [General	84.32
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	84.23
KOG2377	657	consensus Uncharacterized conserved protein [Funct	83.44
COG5276	370	Uncharacterized conserved protein [Function unknow	83.29
KOG2247	615	consensus WD40 repeat-containing protein [General	83.26
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	83.24
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	82.02
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	81.74
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	80.92
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	80.84
KOG2377	657	consensus Uncharacterized conserved protein [Funct	80.79

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.8e-42  Score=276.27  Aligned_cols=256  Identities=19%  Similarity=0.254  Sum_probs=220.7

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .+..+||||.|.|+|+||..+.           .|. ....||..+  +++|+|||+. |+|+.||+|++||.+++++..
T Consensus       126 ~g~~l~tGsGD~TvR~WD~~Te-----------Tp~-~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g  193 (480)
T KOG0271|consen  126 TGSRLVTGSGDTTVRLWDLDTE-----------TPL-FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG  193 (480)
T ss_pred             CCceEEecCCCceEEeeccCCC-----------Ccc-eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc
Confidence            4778999999999999998876           343 346799999  9999999999 999999999999999999999


Q ss_pred             cccceeeeeeeeeeeecCC------ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEE
Q 021744          102 INNRAVIKTDILCRNWVQG------NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVR  175 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~------~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~  175 (308)
                      ..+.+|++.+..++|-|-.      ..++++.||.|+|||+..+ +.+..+.+|+.+|+|+.|-.+ .+++++|.|++|+
T Consensus       194 ~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~-~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIk  271 (480)
T KOG0271|consen  194 RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG-TCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIK  271 (480)
T ss_pred             ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-eEEEEeccCccceEEEEEcCC-ceEEecCCCceEE
Confidence            9999999999999987643      3388999999999999998 889999999999999999754 4899999999999


Q ss_pred             EEeCCCCeEEEEEe------------------------------------------------------------------
Q 021744          176 VWDCASGQCAGVIN------------------------------------------------------------------  189 (308)
Q Consensus       176 ~wd~~~~~~~~~~~------------------------------------------------------------------  189 (308)
                      +|+...|.+...++                                                                  
T Consensus       272 vw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW  351 (480)
T KOG0271|consen  272 VWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLW  351 (480)
T ss_pred             EEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEe
Confidence            99887755443321                                                                  


Q ss_pred             --------------CCCeeEE--EEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCC
Q 021744          190 --------------LGGEVGC--MISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDG  249 (308)
Q Consensus       190 --------------~~~~v~~--~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg  249 (308)
                                    |...+..  ++||++++++++ |+.|++||.++++.+ ++.+|-..|+.++|+.|  +|++|+.|.
T Consensus       352 ~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDs  431 (480)
T KOG0271|consen  352 NPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDS  431 (480)
T ss_pred             cccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCc
Confidence                          1111222  257899999887 999999999999988 89999999999999999  999999999


Q ss_pred             eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEe
Q 021744          250 AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIG  298 (308)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~  298 (308)
                      ++++|+++++    ++...+.+|...|.+ .|+|||+.+++++ +..+.++
T Consensus       432 TLKvw~V~tk----Kl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw  478 (480)
T KOG0271|consen  432 TLKVWDVRTK----KLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW  478 (480)
T ss_pred             eEEEEEeeee----eecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence            9999999997    778899999999999 9999999998776 4444443

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.1e-41  Score=275.84  Aligned_cols=255  Identities=16%  Similarity=0.205  Sum_probs=227.8

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCC-C-e-eeccCCCcEEEEECCCCCCc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNT-W-G-RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g-~-~-~s~~~d~~i~vwd~~~~~~~  100 (308)
                      +..|||||-+|.++||+...+            +....+.||...  ++.|+|.. . . |||+.||++++|++++..++
T Consensus       187 s~~laT~swsG~~kvW~~~~~------------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l  254 (459)
T KOG0272|consen  187 SKHLATGSWSGLVKVWSVPQC------------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL  254 (459)
T ss_pred             CCeEEEeecCCceeEeecCCc------------ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch
Confidence            678999999999999999988            556678899988  89999983 4 4 99999999999999765444


Q ss_pred             ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744          101 NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC  179 (308)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~  179 (308)
                       ..+.+|...|..++|.|+|.+ .+++.|.+-++||+.++ +.+...+||...|.+++|+|||.+++||+.|..-+|||+
T Consensus       255 -~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk-~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl  332 (459)
T KOG0272|consen  255 -QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK-SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL  332 (459)
T ss_pred             -hhhhcchhhheeeeecCCCceeeecccccchhhcccccc-hhhHhhcccccccceeEecCCCceeeccCccchhheeec
Confidence             356778888999999999988 99999999999999999 566677899999999999999999999999999999999


Q ss_pred             CCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC---EEEEEcCCCeE
Q 021744          180 ASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAI  251 (308)
Q Consensus       180 ~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~---~l~~g~~dg~i  251 (308)
                      +++.++..+. |-.+|..+  +|+|..|++|+ |++++|||++..... ++.+|.+-|+.+.|+|.   +|++++.|+++
T Consensus       333 Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~  412 (459)
T KOG0272|consen  333 RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTV  412 (459)
T ss_pred             ccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcce
Confidence            9999999998 77777766  58899999887 999999999988877 89999999999999996   99999999999


Q ss_pred             EEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEe
Q 021744          252 LAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIG  298 (308)
Q Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~  298 (308)
                      +||..++.    ++++++.+|.+.|.+ .+++|+.++++++ +.++-+|
T Consensus       413 kiWs~~~~----~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW  457 (459)
T KOG0272|consen  413 KIWSTRTW----SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLW  457 (459)
T ss_pred             eeecCCCc----ccchhhcCCccceEEEEeccCCceEEEeccCceeeec
Confidence            99999986    999999999999999 9999999999776 5444443

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9e-39  Score=256.20  Aligned_cols=243  Identities=19%  Similarity=0.303  Sum_probs=214.2

Q ss_pred             CCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcC
Q 021744           62 PAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVG  137 (308)
Q Consensus        62 ~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~  137 (308)
                      ....||.++  +++|+|+|.. |+|+.|.|+|+||+.+..+. ...++|..-|.+++++|+|.. ++|+.||.|++||.+
T Consensus       109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~-~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk  187 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL-FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK  187 (480)
T ss_pred             cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc-eeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence            455699999  9999999999 99999999999999876554 245678888999999999976 999999999999999


Q ss_pred             CCceeeeEeeCcccceEEEEEeC-----CCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEEEcC-CCEEEEEc-C
Q 021744          138 DGFKLLTQLEGHQKVVSGITLPS-----GSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCMISE-GPWIFIGV-T  209 (308)
Q Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~~~~-~~~l~~~~-d  209 (308)
                      ++.+..+.|.+|+..|++++|.|     ..++|++++.||+|+|||+..++++..+. |..+++|+... ..+|++|+ |
T Consensus       188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~D  267 (480)
T KOG0271|consen  188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQD  267 (480)
T ss_pred             CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCC
Confidence            99788899999999999999965     56789999999999999999999999888 88999999554 66888888 9


Q ss_pred             CcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--------------------------------------EEEEEcCCCe
Q 021744          210 NFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--------------------------------------LLFAGTQDGA  250 (308)
Q Consensus       210 ~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--------------------------------------~l~~g~~dg~  250 (308)
                      ++|++|+...+.+. .+++|...|+.++.+.+                                      .|++|++|.+
T Consensus       268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t  347 (480)
T KOG0271|consen  268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT  347 (480)
T ss_pred             ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence            99999999998877 89999999999998821                                      4999999999


Q ss_pred             EEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee---ceEEEEeecCceeEEeC
Q 021744          251 ILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV---SFIMFIGQNNKGVVCYR  308 (308)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~---s~~i~~~~~~~~~~~~~  308 (308)
                      +.+|+-...+   +++..+.+|...|+. .||||+++++++.   ++.+|.....+-+..||
T Consensus       348 lflW~p~~~k---kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR  406 (480)
T KOG0271|consen  348 LFLWNPFKSK---KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR  406 (480)
T ss_pred             EEEecccccc---cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh
Confidence            9999976542   788999999999999 9999999999665   78888888888777776

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.3e-36  Score=235.91  Aligned_cols=255  Identities=15%  Similarity=0.231  Sum_probs=219.1

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCC----
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSK----   98 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~----   98 (308)
                      ...|+|+|.||.+.|||..+.|+.          ...|++  ..+  ..+|+|.|+. |.|+-|+...||++.+.+    
T Consensus        67 sr~ivSaSqDGklIvWDs~TtnK~----------haipl~--s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~  134 (343)
T KOG0286|consen   67 SRRIVSASQDGKLIVWDSFTTNKV----------HAIPLP--SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGN  134 (343)
T ss_pred             cCeEEeeccCCeEEEEEcccccce----------eEEecC--ceeEEEEEECCCCCeEEecCcCceeEEEeccccccccc
Confidence            578999999999999998887442          111211  223  7899999999 999999999999997552    


Q ss_pred             -CcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC-CCCEEEEeeCCCcEEE
Q 021744           99 -NSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRV  176 (308)
Q Consensus        99 -~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~v~~  176 (308)
                       +......+|...+.+|.|.+++.+++++.|.+..+||++++ +.+..|.+|.+.|.+++++| +++.+++|+-|++.++
T Consensus       135 ~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g-~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~akl  213 (343)
T KOG0286|consen  135 VRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETG-QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKL  213 (343)
T ss_pred             ceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccc-eEEEEecCCcccEEEEecCCCCCCeEEecccccceee
Confidence             33345678888899999999999999999999999999999 89999999999999999999 8999999999999999


Q ss_pred             EeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCC---CCCEEEEEEeCC--EEEEEcC
Q 021744          177 WDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGP---VGQVYAMAVGND--LLFAGTQ  247 (308)
Q Consensus       177 wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~---~~~v~~~~~~~~--~l~~g~~  247 (308)
                      ||++.+.++++|. |+..+.++  +|+|.-+++|+ |++.++||++..+.+....|   ..+|++++||..  +|++|..
T Consensus       214 WD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~  293 (343)
T KOG0286|consen  214 WDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYD  293 (343)
T ss_pred             eeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeec
Confidence            9999999999999 88888766  69999999998 88999999999888744434   358999999988  8888999


Q ss_pred             CCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEE
Q 021744          248 DGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFI  297 (308)
Q Consensus       248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~  297 (308)
                      |..+.+||.-.+    +.+..+.+|.+.|++ ..+|||.-++++. +..+-+
T Consensus       294 d~~c~vWDtlk~----e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lri  341 (343)
T KOG0286|consen  294 DFTCNVWDTLKG----ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRI  341 (343)
T ss_pred             CCceeEeecccc----ceEEEeeccCCeeEEEEECCCCcEEEecchhHheee
Confidence            999999999887    778899999999999 9999998777554 444443

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.6e-36  Score=229.48  Aligned_cols=269  Identities=14%  Similarity=0.220  Sum_probs=219.0

Q ss_pred             CCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCC-c
Q 021744           23 GGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKN-S  100 (308)
Q Consensus        23 ~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~-~  100 (308)
                      .+..-+|||+|.|.+||+|.+.++   .|.   +..+.+   .+|.+ .+.++|+++. |+|+.- .||+||++++.+ .
T Consensus         7 ~d~~viLvsA~YDhTIRfWqa~tG---~C~---rTiqh~---dsqVN-rLeiTpdk~~LAaa~~q-hvRlyD~~S~np~P   75 (311)
T KOG0315|consen    7 TDDPVILVSAGYDHTIRFWQALTG---ICS---RTIQHP---DSQVN-RLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNP   75 (311)
T ss_pred             CCCceEEEeccCcceeeeeehhcC---eEE---EEEecC---cccee-eEEEcCCcchhhhccCC-eeEEEEccCCCCCc
Confidence            345678999999999999999887   221   111111   11211 5899999999 666654 599999988766 4


Q ss_pred             ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744          101 NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC  179 (308)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~  179 (308)
                      .....+|.+.|..+.|..+|.- ++|++||+++|||++.. ...+.++ |..+|+++..+|+...|++|..+|.|++||+
T Consensus        76 v~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~-~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl  153 (311)
T KOG0315|consen   76 VATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL-SCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDL  153 (311)
T ss_pred             eeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc-ccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEc
Confidence            4556778888999999999987 99999999999999987 5555555 8899999999999999999999999999999


Q ss_pred             CCCeEEEEEe--CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCc------ee-eeeCCCCCEEEEEEeCC--EEEEE
Q 021744          180 ASGQCAGVIN--LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNT------DL-SLSGPVGQVYAMAVGND--LLFAG  245 (308)
Q Consensus       180 ~~~~~~~~~~--~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~------~~-~~~~~~~~v~~~~~~~~--~l~~g  245 (308)
                      .+..+...+.  ....+.++  .++|..++++. .|..++|++-+.+      ++ .++.|...+..+.+||+  +||++
T Consensus       154 ~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~  233 (311)
T KOG0315|consen  154 GENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATC  233 (311)
T ss_pred             cCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEee
Confidence            9987777665  33445554  58999999876 7899999987653      22 67899999999999999  99999


Q ss_pred             cCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee---ceEEEEeecCceeEEe
Q 021744          246 TQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV---SFIMFIGQNNKGVVCY  307 (308)
Q Consensus       246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~---s~~i~~~~~~~~~~~~  307 (308)
                      +.|.+++||+.++.   ++....+.+|+.++.. +||.||+||++++   ...+|-+.+++.+.-|
T Consensus       234 ssdktv~iwn~~~~---~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy  296 (311)
T KOG0315|consen  234 SSDKTVKIWNTDDF---FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY  296 (311)
T ss_pred             cCCceEEEEecCCc---eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec
Confidence            99999999999985   3666778899999999 9999999999666   5778888899888765

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-36  Score=232.35  Aligned_cols=261  Identities=14%  Similarity=0.161  Sum_probs=205.6

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      +...+++++.|+++.+|+....+.   ++    -.....+.||+-.  .+..++||++ +++++|+++|+||+++++.. 
T Consensus        27 ~~~~l~sasrDk~ii~W~L~~dd~---~~----G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t-   98 (315)
T KOG0279|consen   27 NSDILVSASRDKTIIVWKLTSDDI---KY----GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGEST-   98 (315)
T ss_pred             CCceEEEcccceEEEEEEeccCcc---cc----CceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEE-
Confidence            456899999999999999776411   00    0112234577666  8999999999 99999999999999988543 


Q ss_pred             cccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEee--CcccceEEEEEeCC--CCEEEEeeCCCcEEE
Q 021744          102 INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLE--GHQKVVSGITLPSG--SDKLYSGSKDETVRV  176 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~--~h~~~v~~~~~~~~--~~~l~s~s~dg~v~~  176 (308)
                      ....+|...+.+++|+++++. ++|+.|.+|++|++....  ..++.  +|++.|.|+.|+|+  ..++++++.|++|++
T Consensus        99 ~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c--k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKv  176 (315)
T KOG0279|consen   99 RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC--KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKV  176 (315)
T ss_pred             EEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE--EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEE
Confidence            456788888999999999966 999999999999998762  33333  23889999999997  678999999999999


Q ss_pred             EeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC-EEEEEcCCCeE
Q 021744          177 WDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAI  251 (308)
Q Consensus       177 wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i  251 (308)
                      ||+++-+....+. |.+.++.+  +|||.++++|. ||.+.+||++.++......|...|.+++|+|+ +.++...+-.|
T Consensus       177 Wnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sI  256 (315)
T KOG0279|consen  177 WNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSI  256 (315)
T ss_pred             EccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCce
Confidence            9999988888777 66666544  79999999887 99999999999999877788999999999999 55555556679


Q ss_pred             EEEEcCCCCcccccceecc----cc----CCCe-EE-EEecCCCeEEEee-ceEEEEee
Q 021744          252 LAWKFNVTTNCFEPAASLK----VH----TDSN-RA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       252 ~iwd~~~~~~~~~~~~~~~----~~----~~~v-~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      +|||+.++    ..+.++.    +.    ..+. .+ +|++||+.|++.. +..|-+++
T Consensus       257 kIwdl~~~----~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q  311 (315)
T KOG0279|consen  257 KIWDLESK----AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ  311 (315)
T ss_pred             EEEeccch----hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence            99999997    4444443    22    1222 33 9999999888665 55555544

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.2e-37  Score=252.42  Aligned_cols=217  Identities=20%  Similarity=0.266  Sum_probs=193.4

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .+.-+||++.||++++|+.+..           .|+ ..+.||...  .++|+|+|++ +|++.|.+-|+||+++++.+.
T Consensus       230 ~~~~lat~s~Dgtvklw~~~~e-----------~~l-~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL  297 (459)
T KOG0272|consen  230 SDLNLATASADGTVKLWKLSQE-----------TPL-QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL  297 (459)
T ss_pred             CccceeeeccCCceeeeccCCC-----------cch-hhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhH
Confidence            3557999999999999998875           233 346678766  8999999999 999999999999998876542


Q ss_pred             cccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744          102 INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA  180 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~  180 (308)
                       .+.+|...+..++|.++|.. ++|+.|..-+|||++++ ..+..|.+|.++|.+++|+|+|-.|+|||.|++++|||++
T Consensus       298 -~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg-r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR  375 (459)
T KOG0272|consen  298 -LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG-RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR  375 (459)
T ss_pred             -hhcccccccceeEecCCCceeeccCccchhheeecccC-cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence             56789999999999999988 89999999999999999 7889999999999999999999999999999999999999


Q ss_pred             CCeEEEEEe-CCCeeEEE--Ec-CCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEE
Q 021744          181 SGQCAGVIN-LGGEVGCM--IS-EGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAIL  252 (308)
Q Consensus       181 ~~~~~~~~~-~~~~v~~~--~~-~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~  252 (308)
                      ..+.+.++. |...|+.+  .| .|.+|++++ |+++++|..++.+++ .+.+|++.|.+++++++  .+++++.|++++
T Consensus       376 ~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~K  455 (459)
T KOG0272|consen  376 MRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIK  455 (459)
T ss_pred             ccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceee
Confidence            988888887 66666655  34 578888776 999999999999988 89999999999999999  899999999999


Q ss_pred             EEE
Q 021744          253 AWK  255 (308)
Q Consensus       253 iwd  255 (308)
                      +|.
T Consensus       456 LW~  458 (459)
T KOG0272|consen  456 LWR  458 (459)
T ss_pred             ecc
Confidence            995

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8e-36  Score=237.79  Aligned_cols=248  Identities=15%  Similarity=0.206  Sum_probs=220.1

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      .+.++++.|.+|++||..++            ..-..++||+.+  .|+|+..|++ |+++.|-.+++||.++-..-...
T Consensus       121 ~~v~~as~d~tikv~D~~tg------------~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks  188 (406)
T KOG0295|consen  121 ALVVSASEDATIKVFDTETG------------ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKS  188 (406)
T ss_pred             eEEEEecCCceEEEEEccch------------hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHH
Confidence            46788999999999999988            235668899999  8999999999 99999999999999764333335


Q ss_pred             cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744          104 NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~  182 (308)
                      ..+|+..+.++.|.|.|.. ++++.|.+|+.|++.++ ..+.++.+|...|..++.+.||..+++++.|.+|++|-+.++
T Consensus       189 ~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~  267 (406)
T KOG0295|consen  189 LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK  267 (406)
T ss_pred             hcCcccceeeEEEEecCCeeeecccccceeEEecccc-eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc
Confidence            6778888999999999976 89999999999999999 899999999999999999999999999999999999999999


Q ss_pred             eEEEEEe-CCCeeEEEE--c---------------CCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--
Q 021744          183 QCAGVIN-LGGEVGCMI--S---------------EGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--  240 (308)
Q Consensus       183 ~~~~~~~-~~~~v~~~~--~---------------~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--  240 (308)
                      ++...+. |+.++.|+.  |               .++++.+++ |++|++||+.++.++ ++.+|.+.|..++|+|.  
T Consensus       268 ~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gk  347 (406)
T KOG0295|consen  268 QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGK  347 (406)
T ss_pred             hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCe
Confidence            8887777 666666651  1               135788888 999999999999988 99999999999999998  


Q ss_pred             EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       241 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      +|+++.+|+++++||+.+.    ++.+.+..|...+++ .|..+..++++++
T Consensus       348 yi~ScaDDktlrvwdl~~~----~cmk~~~ah~hfvt~lDfh~~~p~VvTGs  395 (406)
T KOG0295|consen  348 YILSCADDKTLRVWDLKNL----QCMKTLEAHEHFVTSLDFHKTAPYVVTGS  395 (406)
T ss_pred             EEEEEecCCcEEEEEeccc----eeeeccCCCcceeEEEecCCCCceEEecc
Confidence            9999999999999999997    889999999999999 9999888777554

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-34  Score=220.35  Aligned_cols=239  Identities=20%  Similarity=0.241  Sum_probs=198.2

Q ss_pred             CCCCCccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCCCc----ccccceeeeeeeeeeeecCCce-EEeeCCC
Q 021744           59 PLPPAATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSKNS----NINNRAVIKTDILCRNWVQGNC-MYGEKCK  129 (308)
Q Consensus        59 ~~~~~~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~  129 (308)
                      .+...+.+|.+.  .++..+.+..  ++++.|+++.+|++...+..    .....+|+..+..+..++++++ ++++.|+
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~   85 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG   85 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence            344567899999  7888888555  99999999999999654321    2244678888999999999988 8999999


Q ss_pred             eEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-C--CCeeEEE--EcC--CC
Q 021744          130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-L--GGEVGCM--ISE--GP  202 (308)
Q Consensus       130 ~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~--~~~v~~~--~~~--~~  202 (308)
                      ++++||+.++ +..+.|.+|...|.+++|++|.++++||+.|+++++||.. +++..++. .  ..-+.|+  +|+  +.
T Consensus        86 ~lrlWDl~~g-~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p  163 (315)
T KOG0279|consen   86 TLRLWDLATG-ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNP  163 (315)
T ss_pred             eEEEEEecCC-cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence            9999999999 8999999999999999999999999999999999999988 45555555 2  5567777  355  55


Q ss_pred             EEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE
Q 021744          203 WIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA  278 (308)
Q Consensus       203 ~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~  278 (308)
                      +|++++ |++|++||+++.+.. .+.+|...++.+++|||  ++++|+.||.+.+||++.+    +.+..+ .|...|.+
T Consensus       164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~----k~lysl-~a~~~v~s  238 (315)
T KOG0279|consen  164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG----KNLYSL-EAFDIVNS  238 (315)
T ss_pred             EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC----ceeEec-cCCCeEee
Confidence            777666 999999999999988 78999999999999999  8999999999999999997    555655 46788888


Q ss_pred             -EEecCCCeEEEee--ceEEEEeecCcee
Q 021744          279 -HFSRDVTSLLGSV--SFIMFIGQNNKGV  304 (308)
Q Consensus       279 -~~s~d~~~l~~s~--s~~i~~~~~~~~~  304 (308)
                       +|+|+.-+|.+..  ++.||-......+
T Consensus       239 l~fspnrywL~~at~~sIkIwdl~~~~~v  267 (315)
T KOG0279|consen  239 LCFSPNRYWLCAATATSIKIWDLESKAVV  267 (315)
T ss_pred             EEecCCceeEeeccCCceEEEeccchhhh
Confidence             9999987777544  7777766544433

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3e-34  Score=249.04  Aligned_cols=238  Identities=14%  Similarity=0.238  Sum_probs=204.8

Q ss_pred             CCCCCCCCceEEecCCCeEEEeecCCCCCCCCC------cc-------------cccCCCCCCccccccc--eeEEecCC
Q 021744           20 GGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCP------YL-------------HRELPLPPAATANGAA--AKRFANNT   78 (308)
Q Consensus        20 ~~~~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~------~~-------------~~~~~~~~~~~gh~~~--~i~~s~~g   78 (308)
                      ...++.++++|.|-.|..|++|........+.+      -+             ..+......+.||+++  ...|+|+.
T Consensus       384 a~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~  463 (707)
T KOG0263|consen  384 AEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDR  463 (707)
T ss_pred             EeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccc
Confidence            345777889999999999999987632100000      00             0011112346699999  89999999


Q ss_pred             Ce-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEE
Q 021744           79 WG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGI  156 (308)
Q Consensus        79 ~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~  156 (308)
                      ++ +++|.|+++|+|.+.+...+. ...+|..++..+.|+|-|.+ ++++.|++.++|..... ++++.+.+|-+.|.|+
T Consensus       464 rfLlScSED~svRLWsl~t~s~~V-~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~-~PlRifaghlsDV~cv  541 (707)
T KOG0263|consen  464 RFLLSCSEDSSVRLWSLDTWSCLV-IYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN-KPLRIFAGHLSDVDCV  541 (707)
T ss_pred             cceeeccCCcceeeeecccceeEE-EecCCCcceeeEEecCCceEEEecCCCceeeeeecccC-CchhhhcccccccceE
Confidence            99 999999999999998765543 44588889999999999977 99999999999999987 8999999999999999


Q ss_pred             EEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCC
Q 021744          157 TLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQ  231 (308)
Q Consensus       157 ~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~  231 (308)
                      .|+|+..++++||.|.+|++||+.+|..++.|. |..++.++  +|+|++|++|+ |+.|++||+.++..+ .+.+|.+.
T Consensus       542 ~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~t  621 (707)
T KOG0263|consen  542 SFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGT  621 (707)
T ss_pred             EECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCc
Confidence            999999999999999999999999999999998 88888877  68999999988 999999999999888 89999999


Q ss_pred             EEEEEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744          232 VYAMAVGND--LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       232 v~~~~~~~~--~l~~g~~dg~i~iwd~~~~  259 (308)
                      |.++.|+.+  .||+|+.|..|++||+...
T Consensus       622 i~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  622 IYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             eeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            999999999  9999999999999998764

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.1e-34  Score=228.84  Aligned_cols=256  Identities=16%  Similarity=0.232  Sum_probs=209.9

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN  104 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~  104 (308)
                      ...+++|..|++|++||...-            .....+.||++..++...+... ++|++|.||+|||+++++++. ..
T Consensus       207 D~kiVSGlrDnTikiWD~n~~------------~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~-tl  273 (499)
T KOG0281|consen  207 DEKIVSGLRDNTIKIWDKNSL------------ECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLN-TL  273 (499)
T ss_pred             chhhhcccccCceEEeccccH------------HHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhh-HH
Confidence            457999999999999997764            3345678999996666667778 999999999999999998874 33


Q ss_pred             ceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCc--eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744          105 RAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGF--KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (308)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~  182 (308)
                      ..|...+.-+.|+ .|..++.+.|..|.+||+....  .+.+.+.||...|..+.|+  .++++++|.|.+|++|++.+.
T Consensus       274 ihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~  350 (499)
T KOG0281|consen  274 IHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC  350 (499)
T ss_pred             hhhcceeEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccce
Confidence            4555566666665 4566999999999999998652  4466788999999999997  459999999999999999999


Q ss_pred             eEEEEEe-CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcCCC
Q 021744          183 QCAGVIN-LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       183 ~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~  259 (308)
                      ++++++. |..-+.|+--.++++++|+ |.+|++||+..|.++ .+.+|+.-|.++.|....+++|..||+|++||+...
T Consensus       351 efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  351 EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             eeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccc
Confidence            9999998 7778889989999999987 999999999999998 789999999999999889999999999999999875


Q ss_pred             Ccc-----cccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          260 TNC-----FEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       260 ~~~-----~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      ..-     .-++.++..|.+.|.- .|  |...++++. +..|.+|.
T Consensus       431 ldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd  475 (499)
T KOG0281|consen  431 LDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD  475 (499)
T ss_pred             cCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence            320     0134556678888877 77  445566544 66666654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=6.7e-33  Score=220.86  Aligned_cols=261  Identities=14%  Similarity=0.233  Sum_probs=219.5

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      +..++||+.|+++++||..++            .+...+.||-..  .+++|+.-.| ++++.|+.|+.||++..+.+. 
T Consensus       163 n~wf~tgs~DrtikIwDlatg------------~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR-  229 (460)
T KOG0285|consen  163 NEWFATGSADRTIKIWDLATG------------QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR-  229 (460)
T ss_pred             ceeEEecCCCceeEEEEcccC------------eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHH-
Confidence            678999999999999999998            455567788777  8999999999 999999999999998776653 


Q ss_pred             ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744          103 NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~  181 (308)
                      ...+|-..|.++...|.-.. ++|+.|.++++||+++. ..+..+.||+.+|..+.+.|-...+++||.|++|++||++.
T Consensus       230 ~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr-~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a  308 (460)
T KOG0285|consen  230 HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR-ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA  308 (460)
T ss_pred             HhccccceeEEEeccccceeEEecCCcceEEEeeeccc-ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeecc
Confidence            45677788999999988755 99999999999999999 78999999999999999999888999999999999999999


Q ss_pred             CeEEEEEe-CCCeeEEEE--cCCCEEEEEcCCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEc
Q 021744          182 GQCAGVIN-LGGEVGCMI--SEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKF  256 (308)
Q Consensus       182 ~~~~~~~~-~~~~v~~~~--~~~~~l~~~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~  256 (308)
                      ++...++. |...+.+++  |....+++++...|+.|++..++.. .+.+|...+++++...| ++++|+++|.+.+||.
T Consensus       309 gkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdw  388 (460)
T KOG0285|consen  309 GKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDW  388 (460)
T ss_pred             CceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEec
Confidence            99888887 667777774  5566677777889999999998877 78999999999999999 9999999999999999


Q ss_pred             CCCCcccccceecc-----ccCCCeEE-EEecCCCeEEEee-ceEEEEeecC
Q 021744          257 NVTTNCFEPAASLK-----VHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQNN  301 (308)
Q Consensus       257 ~~~~~~~~~~~~~~-----~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~~~  301 (308)
                      +++.. ++..+++.     ..+..|.+ +|...|..|+++. +..|-++..+
T Consensus       389 ksg~n-yQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  389 KSGHN-YQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED  439 (460)
T ss_pred             CcCcc-cccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence            98754 33333222     12345677 9999998888665 5555555443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.4e-32  Score=239.09  Aligned_cols=264  Identities=16%  Similarity=0.284  Sum_probs=215.5

Q ss_pred             CCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC
Q 021744           23 GGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN   99 (308)
Q Consensus        23 ~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~   99 (308)
                      +-.+..+++++.|+.+++|+......          .....+.+|...  .++|+|++.+ ++++.|++|||||+.....
T Consensus       168 s~~g~~l~~~~~~~~i~~~~~~~~~~----------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~  237 (456)
T KOG0266|consen  168 SPDGRALAAASSDGLIRIWKLEGIKS----------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR  237 (456)
T ss_pred             cCCCCeEEEccCCCcEEEeecccccc----------hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence            44466799999999999999865510          122223677666  8999999999 9999999999999944433


Q ss_pred             cccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 021744          100 SNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (308)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd  178 (308)
                      ......+|...+.+++|+|.++. ++|+.|++|+|||++++ +++..+.+|.+.|++++|++++++|++++.|+.|++||
T Consensus       238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd  316 (456)
T KOG0266|consen  238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWD  316 (456)
T ss_pred             EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence            33456689999999999999955 99999999999999998 89999999999999999999999999999999999999


Q ss_pred             CCCCe--EEEEEe-CCC--eeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCE---EEEEEeCC--EEEE
Q 021744          179 CASGQ--CAGVIN-LGG--EVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQV---YAMAVGND--LLFA  244 (308)
Q Consensus       179 ~~~~~--~~~~~~-~~~--~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v---~~~~~~~~--~l~~  244 (308)
                      +.+++  ++..+. ...  ++.++  ++++++++++. |+.+++||++.+... .+.+|...+   .+...++.  ++++
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s  396 (456)
T KOG0266|consen  317 LETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYS  396 (456)
T ss_pred             CCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEE
Confidence            99999  456665 222  34544  48899999887 789999999988777 777777643   33344555  9999


Q ss_pred             EcCCCeEEEEEcCCCCcccccceecccc-CCCeEE-EEecCCCeEEEee---ceEEEEeecC
Q 021744          245 GTQDGAILAWKFNVTTNCFEPAASLKVH-TDSNRA-HFSRDVTSLLGSV---SFIMFIGQNN  301 (308)
Q Consensus       245 g~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~-~~s~d~~~l~~s~---s~~i~~~~~~  301 (308)
                      |+.|+.|++||+.++    ..+..+.+| ...+.. +++|...+++...   +..+.+|..+
T Consensus       397 g~~d~~v~~~~~~s~----~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  397 GSEDGSVYVWDSSSG----GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             EeCCceEEEEeCCcc----chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            999999999999986    788889999 777777 9999998888554   6667766654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.3e-33  Score=226.78  Aligned_cols=248  Identities=17%  Similarity=0.244  Sum_probs=210.4

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      |+.|++|+..|...+|+...++            .-..++.|..+  ++.++++|.. +||+.+|.|++|+.+-. .+..
T Consensus       108 GRRLltgs~SGEFtLWNg~~fn------------FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~  174 (464)
T KOG0284|consen  108 GRRLLTGSQSGEFTLWNGTSFN------------FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKI  174 (464)
T ss_pred             CceeEeecccccEEEecCceee------------HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHH
Confidence            5679999999999999987651            22335567767  8999999999 99999999999998533 2223


Q ss_pred             ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744          103 NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~  181 (308)
                      ....|...|+.++|+|.... ++++.||+|+|||.... +..+.+.||.-.|.+++|+|...+++++|.|..|++||.++
T Consensus       175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS  253 (464)
T KOG0284|consen  175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS  253 (464)
T ss_pred             hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC-chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence            33444467999999997754 99999999999999877 66778899999999999999999999999999999999999


Q ss_pred             CeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEE
Q 021744          182 GQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILA  253 (308)
Q Consensus       182 ~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~i  253 (308)
                      ++++.++. |...|..+  .+++.+|++++ |..++++|+++.+.+ .+.+|+..++++.|+|-   +|.+|+.||.|..
T Consensus       254 g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh  333 (464)
T KOG0284|consen  254 GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVH  333 (464)
T ss_pred             cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEE
Confidence            99999988 77777766  47789999887 999999999976655 89999999999999986   9999999999999


Q ss_pred             EEcCCCCcccccceecc-ccCCCeEE-EEecCCCeEEEee
Q 021744          254 WKFNVTTNCFEPAASLK-VHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       254 wd~~~~~~~~~~~~~~~-~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      |.+...    +++..+. +|...|++ +|.|=|-.|+++.
T Consensus       334 ~~v~~~----~p~~~i~~AHd~~iwsl~~hPlGhil~tgs  369 (464)
T KOG0284|consen  334 WVVGLE----EPLGEIPPAHDGEIWSLAYHPLGHILATGS  369 (464)
T ss_pred             Eecccc----ccccCCCcccccceeeeeccccceeEeecC
Confidence            999954    5666655 79999999 9999997777544

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.9e-31  Score=207.29  Aligned_cols=235  Identities=14%  Similarity=0.202  Sum_probs=196.7

Q ss_pred             CCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccce-eeeeeeeeeeecCCce-EEeeCCCeEEEEEc
Q 021744           62 PAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRA-VIKTDILCRNWVQGNC-MYGEKCKFLHSWTV  136 (308)
Q Consensus        62 ~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~  136 (308)
                      ..++||.+.  ++.|++|.++ ++++.||.+.|||.-+....  .... ...-|..|+|+|.+.. +.|+-|+...||++
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~--haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l  126 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV--HAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL  126 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce--eEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence            567899888  9999999999 99999999999998554322  1112 2223899999999988 78999999999999


Q ss_pred             CCC--c---eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--Ec-CCCEEEEE
Q 021744          137 GDG--F---KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--IS-EGPWIFIG  207 (308)
Q Consensus       137 ~~~--~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~-~~~~l~~~  207 (308)
                      .+.  .   +..+++.+|++-+.++.|-+ ..+|+|+|.|.+..+||+++++.+..|. |.+.+.++  .| +++.+++|
T Consensus       127 s~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg  205 (343)
T KOG0286|consen  127 STRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSG  205 (343)
T ss_pred             ccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEec
Confidence            854  1   45678999999999999987 5679999999999999999999999998 88888877  35 68888887


Q ss_pred             c-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecc--ccCCCeEE-EE
Q 021744          208 V-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK--VHTDSNRA-HF  280 (308)
Q Consensus       208 ~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~-~~  280 (308)
                      + |+..++||++.+.+. .+.+|+..|+++.|.|+  -|++|++|+++++||++..    +.+..+.  .-..+|++ +|
T Consensus       206 ~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD----~~~a~ys~~~~~~gitSv~F  281 (343)
T KOG0286|consen  206 GCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD----QELAVYSHDSIICGITSVAF  281 (343)
T ss_pred             ccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCC----cEEeeeccCcccCCceeEEE
Confidence            7 999999999999887 89999999999999999  8999999999999999986    4455554  23457788 99


Q ss_pred             ecCCCeEEEee-ceEEEEeecCce
Q 021744          281 SRDVTSLLGSV-SFIMFIGQNNKG  303 (308)
Q Consensus       281 s~d~~~l~~s~-s~~i~~~~~~~~  303 (308)
                      |..|++|+++. +....+|..-|+
T Consensus       282 S~SGRlLfagy~d~~c~vWDtlk~  305 (343)
T KOG0286|consen  282 SKSGRLLFAGYDDFTCNVWDTLKG  305 (343)
T ss_pred             cccccEEEeeecCCceeEeecccc
Confidence            99999999766 666666665443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-32  Score=219.47  Aligned_cols=241  Identities=17%  Similarity=0.192  Sum_probs=212.9

Q ss_pred             CCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEE
Q 021744           60 LPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWT  135 (308)
Q Consensus        60 ~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd  135 (308)
                      +...+.||..+  .+.|+|+-.. ++++.|.+|++||..+++. ...+++|...+..+.|...|.. ++++.|-.+++||
T Consensus       100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~-e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd  178 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL-ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD  178 (406)
T ss_pred             chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-hhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence            33445577766  7889999999 9999999999999999988 5678999999999999999977 8888999999999


Q ss_pred             cCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCc
Q 021744          136 VGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNF  211 (308)
Q Consensus       136 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~  211 (308)
                      ..+-.++++.+.+|+..|.+++|-|.+.+++|++.|.+|+.|++.++.+++++. +..-+..+  ..||.++++++ |.+
T Consensus       179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt  258 (406)
T KOG0295|consen  179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT  258 (406)
T ss_pred             HHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCce
Confidence            988667888999999999999999999999999999999999999999999999 55656655  35788888887 889


Q ss_pred             EEEEEcCCCcee-eeeCCCCCEEEEEEeCC-----------------EEEEEcCCCeEEEEEcCCCCcccccceeccccC
Q 021744          212 VKAWNTQTNTDL-SLSGPVGQVYAMAVGND-----------------LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT  273 (308)
Q Consensus       212 i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~-----------------~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~  273 (308)
                      +++|-+.++++. .+..|+-+|.+++|-|.                 ++.+++.|++|++||+.++    .++.++.+|.
T Consensus       259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg----~cL~tL~ghd  334 (406)
T KOG0295|consen  259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG----MCLFTLVGHD  334 (406)
T ss_pred             EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC----eEEEEEeccc
Confidence            999999999887 78899999999999661                 7889999999999999998    8999999999


Q ss_pred             CCeEE-EEecCCCeEEEee---ceEEEEeecCceeE
Q 021744          274 DSNRA-HFSRDVTSLLGSV---SFIMFIGQNNKGVV  305 (308)
Q Consensus       274 ~~v~~-~~s~d~~~l~~s~---s~~i~~~~~~~~~~  305 (308)
                      ++|+. +|+|.|+||++.+   ++.+|-.+|...+.
T Consensus       335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk  370 (406)
T KOG0295|consen  335 NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK  370 (406)
T ss_pred             ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee
Confidence            99999 9999999999887   67777777766553

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.5e-32  Score=238.45  Aligned_cols=223  Identities=18%  Similarity=0.253  Sum_probs=199.6

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCC------------------------------CcccccceeeeeeeeeeeecC
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSK------------------------------NSNINNRAVIKTDILCRNWVQ  119 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~  119 (308)
                      |..|++|++. |.|..|..|++|.+.+.+                              .......+|.++|..+.|+|+
T Consensus       383 ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd  462 (707)
T KOG0263|consen  383 CAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD  462 (707)
T ss_pred             eEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc
Confidence            8899999999 999999999999997421                              011124678888999999999


Q ss_pred             Cce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE
Q 021744          120 GNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM  197 (308)
Q Consensus       120 ~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~  197 (308)
                      .++ +++++|+++|+|.+.+. ..+-.++||..+|+.+.|+|.|-++||+|.|++.++|.....++++.+. |-..+.|+
T Consensus       463 ~rfLlScSED~svRLWsl~t~-s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv  541 (707)
T KOG0263|consen  463 RRFLLSCSEDSSVRLWSLDTW-SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCV  541 (707)
T ss_pred             ccceeeccCCcceeeeecccc-eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceE
Confidence            987 89999999999999998 7888999999999999999999999999999999999999999999888 77777776


Q ss_pred             --EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccc
Q 021744          198 --ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKV  271 (308)
Q Consensus       198 --~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  271 (308)
                        .|+..++++|+ |.++++||..++..+ .+.+|.++|.+++|+|+  +|++|+.||.|.+||+.++    +++..+.+
T Consensus       542 ~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~----~~v~~l~~  617 (707)
T KOG0263|consen  542 SFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG----SLVKQLKG  617 (707)
T ss_pred             EECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC----cchhhhhc
Confidence              58899999988 999999999999988 78999999999999999  9999999999999999998    88999999


Q ss_pred             cCCCeEE-EEecCCCeEEEee---ceEEEEe
Q 021744          272 HTDSNRA-HFSRDVTSLLGSV---SFIMFIG  298 (308)
Q Consensus       272 ~~~~v~~-~~s~d~~~l~~s~---s~~i~~~  298 (308)
                      |.+.+.+ .||.||..|++++   ++.+|-.
T Consensus       618 Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  618 HTGTIYSLSFSRDGNVLASGGADNSVRLWDL  648 (707)
T ss_pred             ccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence            9999999 9999999999665   5555543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.8e-31  Score=219.48  Aligned_cols=247  Identities=13%  Similarity=0.180  Sum_probs=202.9

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .|++||+|+.||.+|+|+....             +...+..|.++  ++.|+..|.+ ++++.|+++.+||..++....
T Consensus       246 ~G~~LatG~~~G~~riw~~~G~-------------l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q  312 (524)
T KOG0273|consen  246 DGTLLATGSEDGEARIWNKDGN-------------LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ  312 (524)
T ss_pred             CCCeEEEeecCcEEEEEecCch-------------hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence            3789999999999999998765             34445667777  8999999999 999999999999997764431


Q ss_pred             cccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744          102 INNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~  181 (308)
                       ...-|......+.|-.+..+++.+.|+.|+|+.+... .++.++.+|.++|.++.|+|.+.+|+|+|.|++++||....
T Consensus       313 -~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~  390 (524)
T KOG0273|consen  313 -QFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGED-RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ  390 (524)
T ss_pred             -eeeeccCCccceEEecCceEeecCCCceEEEEEecCC-CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence             1122222235567777778899999999999999888 89999999999999999999999999999999999999888


Q ss_pred             CeEEEEEe-CCCeeEEE-E-c---------CCCEEEE-EcCCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEE
Q 021744          182 GQCAGVIN-LGGEVGCM-I-S---------EGPWIFI-GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAG  245 (308)
Q Consensus       182 ~~~~~~~~-~~~~v~~~-~-~---------~~~~l~~-~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g  245 (308)
                      ..+...+. |...+..+ + |         .+..+++ +.|++|++||+..+.++ .+..|..+|++++|+|+  ++|+|
T Consensus       391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsG  470 (524)
T KOG0273|consen  391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASG  470 (524)
T ss_pred             CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEec
Confidence            77776666 55444433 2 2         2345554 45999999999999988 89899999999999999  99999


Q ss_pred             cCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          246 TQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      +.||.|.+|+.+++    +.++.+.+. ..|.. +|+.+|..|.++.
T Consensus       471 s~dg~V~iws~~~~----~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~  512 (524)
T KOG0273|consen  471 SLDGCVHIWSTKTG----KLVKSYQGT-GGIFELCWNAAGDKLGACA  512 (524)
T ss_pred             CCCCeeEeccccch----heeEeecCC-CeEEEEEEcCCCCEEEEEe
Confidence            99999999999997    777777654 44667 9999999888765

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3.8e-32  Score=216.58  Aligned_cols=235  Identities=16%  Similarity=0.215  Sum_probs=202.4

Q ss_pred             CCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcC
Q 021744           62 PAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVG  137 (308)
Q Consensus        62 ~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~  137 (308)
                      ..+.||.++  ++++.|-... ++|+.|++|+|||+.+++.. ..+.+|...+..+.+++-..+ .++++|+.|+.||++
T Consensus       145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk-ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe  223 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK-LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE  223 (460)
T ss_pred             hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE-EeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence            455699999  9999999888 99999999999999998754 355678888999999998877 789999999999999


Q ss_pred             CCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEEE--cCCCEEEEEc-CCcEE
Q 021744          138 DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCMI--SEGPWIFIGV-TNFVK  213 (308)
Q Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~  213 (308)
                      .. +.++.+.||-..|.+++.+|.-..|++|+.|.++++||+++...+..+. |..++..+.  +-+..+++|+ |++|+
T Consensus       224 ~n-kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr  302 (460)
T KOG0285|consen  224 YN-KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR  302 (460)
T ss_pred             hh-hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence            99 8999999999999999999999999999999999999999999999999 888888774  3355666666 99999


Q ss_pred             EEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE
Q 021744          214 AWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG  289 (308)
Q Consensus       214 ~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~  289 (308)
                      +||++.++.. ++..|...+.+++.+|.  .||+++.| .|+-|++..+    ..+..+.+|...+++ +...|+-++.+
T Consensus       303 lWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g----~f~~nlsgh~~iintl~~nsD~v~~~G  377 (460)
T KOG0285|consen  303 LWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEG----EFLQNLSGHNAIINTLSVNSDGVLVSG  377 (460)
T ss_pred             EeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCcc----chhhccccccceeeeeeeccCceEEEc
Confidence            9999999877 89999999999999999  66777665 8999999998    677779999999999 88888865555


Q ss_pred             eeceEEEEeecCce
Q 021744          290 SVSFIMFIGQNNKG  303 (308)
Q Consensus       290 s~s~~i~~~~~~~~  303 (308)
                      +-...|+.+....+
T Consensus       378 ~dng~~~fwdwksg  391 (460)
T KOG0285|consen  378 GDNGSIMFWDWKSG  391 (460)
T ss_pred             CCceEEEEEecCcC
Confidence            55666666654443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.4e-31  Score=214.68  Aligned_cols=258  Identities=17%  Similarity=0.233  Sum_probs=211.9

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc---eeEEecCCC--e-eeccCCCcEEEEECCCCC
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA---AKRFANNTW--G-RNNNFNNHSNNYRAGNSK   98 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~---~i~~s~~g~--~-~s~~~d~~i~vwd~~~~~   98 (308)
                      +...|.||+.||++|+|+....             ......||.+.   +..+.++..  . ++++.|.++++|..+.++
T Consensus       114 ~~~~IltgsYDg~~riWd~~Gk-------------~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~  180 (423)
T KOG0313|consen  114 ASKWILTGSYDGTSRIWDLKGK-------------SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE  180 (423)
T ss_pred             cCceEEEeecCCeeEEEecCCc-------------eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence            3678999999999999996643             23445688888   455556655  3 999999999999998776


Q ss_pred             Ccccc---cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCC------------------------ceeeeEeeCcc
Q 021744           99 NSNIN---NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDG------------------------FKLLTQLEGHQ  150 (308)
Q Consensus        99 ~~~~~---~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~------------------------~~~~~~~~~h~  150 (308)
                      .....   -.+|+..|.++...+++.. ++|+.|.+|.+|+..+.                        +.++-++.||+
T Consensus       181 ~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt  260 (423)
T KOG0313|consen  181 NKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT  260 (423)
T ss_pred             hhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc
Confidence            43322   2488888999999999866 89999999999993210                        14556788999


Q ss_pred             cceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCc--e--e
Q 021744          151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNT--D--L  223 (308)
Q Consensus       151 ~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~--~--~  223 (308)
                      ++|.++.|++ ...+++++.|.+|+.||+.+++.+..+.......|+  .+..++|++|+ |..|++||.+++.  .  +
T Consensus       261 ~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~  339 (423)
T KOG0313|consen  261 EPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ  339 (423)
T ss_pred             cceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEE
Confidence            9999999997 778999999999999999999999999988888887  46778888877 9999999999874  2  2


Q ss_pred             eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE-EeeceEEEEe
Q 021744          224 SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL-GSVSFIMFIG  298 (308)
Q Consensus       224 ~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~-~s~s~~i~~~  298 (308)
                      .+.+|.+.|.++.|+|.   .|++|+.|+++++||+++.+   .++..+.+|...|.+ .|+..+ +++ ++.+..|++.
T Consensus       340 s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k---~plydI~~h~DKvl~vdW~~~~-~IvSGGaD~~l~i~  415 (423)
T KOG0313|consen  340 SLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK---APLYDIAGHNDKVLSVDWNEGG-LIVSGGADNKLRIF  415 (423)
T ss_pred             eeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC---CcceeeccCCceEEEEeccCCc-eEEeccCcceEEEe
Confidence            78899999999999998   89999999999999999973   589999999999999 897654 555 4557777776


Q ss_pred             ec
Q 021744          299 QN  300 (308)
Q Consensus       299 ~~  300 (308)
                      ..
T Consensus       416 ~~  417 (423)
T KOG0313|consen  416 KG  417 (423)
T ss_pred             cc
Confidence            54

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.3e-31  Score=206.69  Aligned_cols=257  Identities=13%  Similarity=0.197  Sum_probs=213.6

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .|+.||||+.|..|.+|+...+           ......+.||.++  .+.+.+|++. ++++.|++|+.||+++++...
T Consensus        58 ~gs~~aSgG~Dr~I~LWnv~gd-----------ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r  126 (338)
T KOG0265|consen   58 DGSCFASGGSDRAIVLWNVYGD-----------CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIR  126 (338)
T ss_pred             CCCeEeecCCcceEEEEecccc-----------ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeee
Confidence            4789999999999999996655           3444556699999  8999999999 999999999999999997653


Q ss_pred             cccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744          102 INNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC  179 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~  179 (308)
                       ..+.|...+..+....-|..  .+++.|+++++||+++. ..+++++ .+-.++++.|..++..+.+|+-|+.|++||+
T Consensus       127 -k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~  203 (338)
T KOG0265|consen  127 -KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-EAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDL  203 (338)
T ss_pred             -hhccccceeeecCccccCCeEEEecCCCceEEEEeeccc-chhhccc-cceeEEEEEecccccceeeccccCceeeecc
Confidence             44566666777775444533  77899999999999988 6777765 5678999999999999999999999999999


Q ss_pred             CCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCce----e-eeeCC----CCCEEEEEEeCC--EEEE
Q 021744          180 ASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTD----L-SLSGP----VGQVYAMAVGND--LLFA  244 (308)
Q Consensus       180 ~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~----~-~~~~~----~~~v~~~~~~~~--~l~~  244 (308)
                      +.+.....+. |..+++.+  +++|.++.+-+ |.++++||.+...+    + .+.+|    +.....++|+|+  .+.+
T Consensus       204 r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~a  283 (338)
T KOG0265|consen  204 RKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITA  283 (338)
T ss_pred             ccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccc
Confidence            9999999998 88888877  58899999866 99999999986422    2 34443    234567889999  8889


Q ss_pred             EcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE-eeceEEEEee
Q 021744          245 GTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG-SVSFIMFIGQ  299 (308)
Q Consensus       245 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~-s~s~~i~~~~  299 (308)
                      |+.|+.+++||....    ..+..+.+|...|+. .|.|...+|+. +.+..||+..
T Consensus       284 gs~dr~vyvwd~~~r----~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  284 GSADRFVYVWDTTSR----RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             ccccceEEEeecccc----cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            999999999999986    788999999999999 99999998884 4488888764

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5.5e-31  Score=205.43  Aligned_cols=239  Identities=14%  Similarity=0.222  Sum_probs=201.6

Q ss_pred             Cccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCC
Q 021744           63 AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGD  138 (308)
Q Consensus        63 ~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~  138 (308)
                      .+.||.+.  .+.|+|+|.. |||+.|..|.+|++-....-.....+|+..|..+.+..+++. ++++.|++++.||+++
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t  121 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET  121 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence            45688888  8999999999 999999999999974332222345689999999999999977 8899999999999999


Q ss_pred             CceeeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEE-c-CCCEEEEEc-CCcEEE
Q 021744          139 GFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI-S-EGPWIFIGV-TNFVKA  214 (308)
Q Consensus       139 ~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~-~-~~~~l~~~~-d~~i~~  214 (308)
                      + +.++.+++|.+-|.++.-..-+ .++.|++.|+++++||+++.++++++....++.++. . .+..+++|. |+.|++
T Consensus       122 G-~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikv  200 (338)
T KOG0265|consen  122 G-KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKV  200 (338)
T ss_pred             c-eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceee
Confidence            9 8999999999999999865544 567899999999999999999999998888888883 3 356677776 999999


Q ss_pred             EEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCC-----CeEEEEecCCCe
Q 021744          215 WNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTD-----SNRAHFSRDVTS  286 (308)
Q Consensus       215 wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~v~~~~s~d~~~  286 (308)
                      ||++.+... .+.+|.++|+.+..+|+  ++.+-+.|.++++||++......+++..+.+|..     ...++|+|+++.
T Consensus       201 Wd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~  280 (338)
T KOG0265|consen  201 WDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTK  280 (338)
T ss_pred             eccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCc
Confidence            999998887 89999999999999999  9999999999999999976544455677766533     345599999998


Q ss_pred             EE-EeeceEEEEeecCc
Q 021744          287 LL-GSVSFIMFIGQNNK  302 (308)
Q Consensus       287 l~-~s~s~~i~~~~~~~  302 (308)
                      +. ++.+..+|+|....
T Consensus       281 i~ags~dr~vyvwd~~~  297 (338)
T KOG0265|consen  281 ITAGSADRFVYVWDTTS  297 (338)
T ss_pred             cccccccceEEEeeccc
Confidence            87 56688889888655

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.7e-31  Score=228.15  Aligned_cols=227  Identities=20%  Similarity=0.243  Sum_probs=190.6

Q ss_pred             CCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCC
Q 021744           23 GGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSK   98 (308)
Q Consensus        23 ~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~   98 (308)
                      ...|.+|+|+|.|+++++|+.++..   +     .........||++.  +++++..+.-  +++|.|.++++|++...+
T Consensus       374 ~~~g~llat~sKD~svilWr~~~~~---~-----~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~  445 (775)
T KOG0319|consen  374 WSSGDLLATGSKDKSVILWRLNNNC---S-----KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSK  445 (775)
T ss_pred             cccCcEEEEecCCceEEEEEecCCc---c-----hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcc
Confidence            4556899999999999999884330   0     01122345688888  8888776655  999999999999995422


Q ss_pred             ----Cccc----ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEee
Q 021744           99 ----NSNI----NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS  169 (308)
Q Consensus        99 ----~~~~----~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s  169 (308)
                          ++.-    ....|.+.+.++++.|+... ++|+.|++.+||+++.. .....+.||+..|+++.|+|..+.++|+|
T Consensus       446 ~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~~dq~laT~S  524 (775)
T KOG0319|consen  446 ETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSKNDQLLATCS  524 (775)
T ss_pred             cccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc-eEEEEeeCCccceEEEEeccccceeEecc
Confidence                1111    23568888999999999876 99999999999999988 89999999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EE
Q 021744          170 KDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LL  242 (308)
Q Consensus       170 ~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l  242 (308)
                      .|++|+||.+.++.+++++. |...+...  ..+++.|+++. ||-+++|+++++++. ++.+|++.|++++.+|.  .+
T Consensus       525 gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~  604 (775)
T KOG0319|consen  525 GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMF  604 (775)
T ss_pred             CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCcccee
Confidence            99999999999999999999 77766533  46788888655 999999999999998 99999999999999998  89


Q ss_pred             EEEcCCCeEEEEEcCC
Q 021744          243 FAGTQDGAILAWKFNV  258 (308)
Q Consensus       243 ~~g~~dg~i~iwd~~~  258 (308)
                      ++|+.||.|.+|.=.+
T Consensus       605 ~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  605 VTGGGDGRIIFWKDVT  620 (775)
T ss_pred             EecCCCeEEEEeecCc
Confidence            9999999999996443

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.3e-30  Score=214.43  Aligned_cols=272  Identities=14%  Similarity=0.165  Sum_probs=221.8

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCcccccc-----c-eeEEecCCCe-eeccCCCcEEEEECCCCCC
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGA-----A-AKRFANNTWG-RNNNFNNHSNNYRAGNSKN   99 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~-----~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~   99 (308)
                      .++|+++.|-+.|+|+.... ...+.-.. +......+.++..     - +++|+.+|.. |+|+.||.+|+|+......
T Consensus       192 ~llasg~~~s~ari~~l~e~-~~~~~~q~-~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~  269 (524)
T KOG0273|consen  192 GLLASGSGDSTARIWNLLEN-SNIGSTQL-VLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI  269 (524)
T ss_pred             hhhhccCCccceeeeeehhh-ccccchhh-hhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhh
Confidence            47999999999999997641 11111000 0000111112221     1 8999999999 9999999999999865543


Q ss_pred             cccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 021744          100 SNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (308)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd  178 (308)
                      .  ....|++++..+.+...|.+ ++++.|+++.+||..++ +..+.+.-|..+-..+.|-. ...+++++.|+.|+++-
T Consensus       270 ~--tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g-~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~k  345 (524)
T KOG0273|consen  270 S--TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG-TVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCK  345 (524)
T ss_pred             h--hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc-eEEEeeeeccCCccceEEec-CceEeecCCCceEEEEE
Confidence            3  66778899999999999987 89999999999999999 78888888888878888874 45799999999999999


Q ss_pred             CCCCeEEEEEe-CCCeeEEEE--cCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC-----------EE
Q 021744          179 CASGQCAGVIN-LGGEVGCMI--SEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-----------LL  242 (308)
Q Consensus       179 ~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~-----------~l  242 (308)
                      +....++.++. |.+++.++-  +.+.+|++++ |+++++|........ .+.+|+..|..+.|+|.           .+
T Consensus       346 v~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l  425 (524)
T KOG0273|consen  346 VGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLML  425 (524)
T ss_pred             ecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceE
Confidence            99999999988 888999883  5699999877 999999998877766 89999999999999983           89


Q ss_pred             EEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee---ceEEEEeecCceeEEeC
Q 021744          243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV---SFIMFIGQNNKGVVCYR  308 (308)
Q Consensus       243 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~---s~~i~~~~~~~~~~~~~  308 (308)
                      ++++.|++|++||+..+    .++.+|..|..+|.+ +|+|+|++++++.   .+.||..+..+-+.+|+
T Consensus       426 ~sas~dstV~lwdv~~g----v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~  491 (524)
T KOG0273|consen  426 ASASFDSTVKLWDVESG----VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ  491 (524)
T ss_pred             EEeecCCeEEEEEccCC----ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec
Confidence            99999999999999998    889999999999999 9999999999654   56666666777777775

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.3e-31  Score=220.94  Aligned_cols=256  Identities=16%  Similarity=0.237  Sum_probs=213.1

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .+.+|++++.|+.|+||++...           ......+.||..+  .++|+++|.. .|++.|+.|++||+++|+.. 
T Consensus       226 ~~hLlLS~gmD~~vklW~vy~~-----------~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~-  293 (503)
T KOG0282|consen  226 KGHLLLSGGMDGLVKLWNVYDD-----------RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVL-  293 (503)
T ss_pred             eeeEEEecCCCceEEEEEEecC-----------cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEE-
Confidence            4678999999999999998764           4567788999988  8999999999 99999999999999999765 


Q ss_pred             cccceeeeeeeeeeeecCC-ce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744          102 INNRAVIKTDILCRNWVQG-NC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC  179 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~-~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~  179 (308)
                       ........+.++.|.|++ +. ++|+.|+.|+.||++++ +.++++..|-+.|..+.|-++++.+++.+.|+++++|+.
T Consensus       294 -~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~  371 (503)
T KOG0282|consen  294 -SRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWEN  371 (503)
T ss_pred             -EEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccch-HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEc
Confidence             222223347888999998 33 89999999999999999 899999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEe----CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCce----eeeeCCC--CCEEEEEEeCC--EEEEEc
Q 021744          180 ASGQCAGVIN----LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTD----LSLSGPV--GQVYAMAVGND--LLFAGT  246 (308)
Q Consensus       180 ~~~~~~~~~~----~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~----~~~~~~~--~~v~~~~~~~~--~l~~g~  246 (308)
                      +....++.+.    |..+...+.|+++++++-+ |+.|.+|.+...-.    ..+.+|.  +.-..+.||||  +|++|.
T Consensus       372 ~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd  451 (503)
T KOG0282|consen  372 RIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD  451 (503)
T ss_pred             CCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeec
Confidence            9888777665    3334444578999999766 99999998654322    2566665  45677899999  999999


Q ss_pred             CCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee--ceEEEEe
Q 021744          247 QDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV--SFIMFIG  298 (308)
Q Consensus       247 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~--s~~i~~~  298 (308)
                      .||.+.+||.++.    +.+..++.|..++.. .|.|...--++++  +..|.+|
T Consensus       452 sdG~v~~wdwkt~----kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw  502 (503)
T KOG0282|consen  452 SDGKVNFWDWKTT----KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIW  502 (503)
T ss_pred             CCccEEEeechhh----hhhhccccCCcceEEEEecCCCcceeEecccCceeEec
Confidence            9999999999996    888999999888888 9999876655444  5566554

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.98  E-value=1.8e-30  Score=197.67  Aligned_cols=219  Identities=16%  Similarity=0.231  Sum_probs=184.4

Q ss_pred             eeccCCCcEEEEECCCCCCcccccceee-eeeeeeeeecCCceEEeeCCCeEEEEEcCCCce-eeeEeeCcccceEEEEE
Q 021744           81 RNNNFNNHSNNYRAGNSKNSNINNRAVI-KTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFK-LLTQLEGHQKVVSGITL  158 (308)
Q Consensus        81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~-~~~~~~~h~~~v~~~~~  158 (308)
                      |++++|.+||+|...+|...  ....|. ..|..+...|++..+.+.....||+||+++... ++.++.+|++.|+++.|
T Consensus        14 vsA~YDhTIRfWqa~tG~C~--rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF   91 (311)
T KOG0315|consen   14 VSAGYDHTIRFWQALTGICS--RTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGF   91 (311)
T ss_pred             EeccCcceeeeeehhcCeEE--EEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEE
Confidence            99999999999999988665  333343 348899999999887777789999999998753 79999999999999999


Q ss_pred             eCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEE--cCCCEEEEEc-CCcEEEEEcCCCcee--eeeCCCCCEE
Q 021744          159 PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI--SEGPWIFIGV-TNFVKAWNTQTNTDL--SLSGPVGQVY  233 (308)
Q Consensus       159 ~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~~wd~~~~~~~--~~~~~~~~v~  233 (308)
                      ..+|+.+++|++||+++|||++.-++.+.+++..++.++.  |+...|++|. +|.|++||+....+.  .+......|.
T Consensus        92 ~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~  171 (311)
T KOG0315|consen   92 QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQ  171 (311)
T ss_pred             eecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCccee
Confidence            9999999999999999999999988888899999999874  6677888887 999999999988655  3344556899


Q ss_pred             EEEEeCC--EEEEEcCCCeEEEEEcCCCCc--ccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEeecC
Q 021744          234 AMAVGND--LLFAGTQDGAILAWKFNVTTN--CFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQNN  301 (308)
Q Consensus       234 ~~~~~~~--~l~~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~~~  301 (308)
                      ++.+.||  +++.+...|..++|++.....  .++++..++.|..-+.. .+|||+++|++++ +..++++...
T Consensus       172 sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~  245 (311)
T KOG0315|consen  172 SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD  245 (311)
T ss_pred             eEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence            9999999  889999999999999876422  25677888899998887 9999999999655 6666665533

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=3.1e-30  Score=194.99  Aligned_cols=247  Identities=15%  Similarity=0.238  Sum_probs=202.1

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .|++.+|++.|++||+||+..+            .+-..+.||...  .++.+.|... ++++.|+.|.+||+++++...
T Consensus        28 dGnY~ltcGsdrtvrLWNp~rg------------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R   95 (307)
T KOG0316|consen   28 DGNYCLTCGSDRTVRLWNPLRG------------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDR   95 (307)
T ss_pred             CCCEEEEcCCCceEEeeccccc------------ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeee
Confidence            4678999999999999998887            344556777766  7778888888 999999999999999998763


Q ss_pred             cccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCC-ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744          102 INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC  179 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~  179 (308)
                       ..++|...+..+.|..+... ++|+-|..+++||.+.. .++++.+..-.+.|.++.+.  +..+++||.||+++.||+
T Consensus        96 -r~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydi  172 (307)
T KOG0316|consen   96 -RFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDI  172 (307)
T ss_pred             -ecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEe
Confidence             56788899999999998877 88999999999999865 36788888888999999886  458999999999999999


Q ss_pred             CCCeEEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEE--EEEeCC--EEEEEcCCCeE
Q 021744          180 ASGQCAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYA--MAVGND--LLFAGTQDGAI  251 (308)
Q Consensus       180 ~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~--~~~~~~--~l~~g~~dg~i  251 (308)
                      +.|+...-+ ...+++|+  +++++..++++ |+++++.|-.+++++ .+++|.+.-+.  .+++..  .+++|++||.|
T Consensus       173 R~G~l~sDy-~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~V  251 (307)
T KOG0316|consen  173 RKGTLSSDY-FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKV  251 (307)
T ss_pred             ecceeehhh-cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceE
Confidence            988765433 45566655  68888888777 999999999999988 78888765433  333333  99999999999


Q ss_pred             EEEEcCCCCcccccceeccccCCC-eEE-EEecCCCeEEEee
Q 021744          252 LAWKFNVTTNCFEPAASLKVHTDS-NRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~-v~~-~~s~d~~~l~~s~  291 (308)
                      ++||+...    ..+..+..+... +.. ++.|.-.-+++++
T Consensus       252 y~wdLvd~----~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~  289 (307)
T KOG0316|consen  252 YFWDLVDE----TQISKLSVVSTVIVTDLSCHPTMDDFITAT  289 (307)
T ss_pred             EEEEeccc----eeeeeeccCCceeEEeeecccCccceeEec
Confidence            99999986    667778777777 555 8888766665444

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=9e-30  Score=203.43  Aligned_cols=258  Identities=12%  Similarity=0.152  Sum_probs=210.4

Q ss_pred             eEEEeecCCCCCCCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCC
Q 021744           11 RVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNN   87 (308)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~   87 (308)
                      .||.-.-+|     .++++|||+.|..-.+|+..++            +....+.||..+  ++.|+.+|.+ |||..+|
T Consensus        66 svFavsl~P-----~~~l~aTGGgDD~AflW~~~~g------------e~~~eltgHKDSVt~~~FshdgtlLATGdmsG  128 (399)
T KOG0296|consen   66 SVFAVSLHP-----NNNLVATGGGDDLAFLWDISTG------------EFAGELTGHKDSVTCCSFSHDGTLLATGDMSG  128 (399)
T ss_pred             ceEEEEeCC-----CCceEEecCCCceEEEEEccCC------------cceeEecCCCCceEEEEEccCceEEEecCCCc
Confidence            355444444     4689999999999999999998            355567799888  8999999999 9999999


Q ss_pred             cEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEE
Q 021744           88 HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY  166 (308)
Q Consensus        88 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  166 (308)
                      .|+||+..++....... ..-..+.=+.++|.+.. +.|+.||.+-.|.+.+. ...+.+.||..++++=.|.|+|+.++
T Consensus       129 ~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~  206 (399)
T KOG0296|consen  129 KVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKRIL  206 (399)
T ss_pred             cEEEEEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCCCceEE
Confidence            99999997764321111 12222445677887766 88999999999999987 67889999999999999999999999


Q ss_pred             EeeCCCcEEEEeCCCCeEEEEEeCCC----e------------------eEEE----------EcC--------------
Q 021744          167 SGSKDETVRVWDCASGQCAGVINLGG----E------------------VGCM----------ISE--------------  200 (308)
Q Consensus       167 s~s~dg~v~~wd~~~~~~~~~~~~~~----~------------------v~~~----------~~~--------------  200 (308)
                      ++..||+|++||..+++++..+....    +                  ..++          +.+              
T Consensus       207 tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~  286 (399)
T KOG0296|consen  207 TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELD  286 (399)
T ss_pred             EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhh
Confidence            99999999999999999887765100    0                  0000          001              


Q ss_pred             -----------CCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccce
Q 021744          201 -----------GPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAA  267 (308)
Q Consensus       201 -----------~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~  267 (308)
                                 =.+.++|+ ||+|.+||+........-.|...|..+.|.++ +|++++.+|.|+.||.+++    +++.
T Consensus       287 esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG----~l~~  362 (399)
T KOG0296|consen  287 ESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTG----QLKF  362 (399)
T ss_pred             hhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeecccc----ceEE
Confidence                       12344566 99999999999888877889999999999997 9999999999999999998    8899


Q ss_pred             eccccCCCeEE-EEecCCCeEEEee
Q 021744          268 SLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       268 ~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      ++.+|...|.. +++|+++++++.+
T Consensus       363 ~y~GH~~~Il~f~ls~~~~~vvT~s  387 (399)
T KOG0296|consen  363 TYTGHQMGILDFALSPQKRLVVTVS  387 (399)
T ss_pred             EEecCchheeEEEEcCCCcEEEEec
Confidence            99999999999 9999999998554

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=5.5e-29  Score=207.43  Aligned_cols=269  Identities=15%  Similarity=0.166  Sum_probs=211.5

Q ss_pred             CCCceEEecCCCeEEEeecCCCCC---CCCCcccc-------------------------------cCCCCCCccccccc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNR---FPCPYLHR-------------------------------ELPLPPAATANGAA   70 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~---~~~~~~~~-------------------------------~~~~~~~~~gh~~~   70 (308)
                      .|-++|+|...|+||+|+.....+   +..+.+..                               .-.....+.||...
T Consensus        70 sG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~  149 (603)
T KOG0318|consen   70 SGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRR  149 (603)
T ss_pred             CceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeecccee
Confidence            366999999999999999664211   11110000                               00001123377666


Q ss_pred             --eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeE
Q 021744           71 --AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQ  145 (308)
Q Consensus        71 --~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~  145 (308)
                        ++.|-|....  +||+.|++|.+|+=. +-......+.|.+.|.+++|+|+|.. ++.+.||.|.+||-.++ +.+..
T Consensus       150 ins~~~KpsRPfRi~T~sdDn~v~ffeGP-PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg-e~vg~  227 (603)
T KOG0318|consen  150 INSVDFKPSRPFRIATGSDDNTVAFFEGP-PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG-EKVGE  227 (603)
T ss_pred             EeeeeccCCCceEEEeccCCCeEEEeeCC-CeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc-cEEEE
Confidence              7888888887  899999999998742 22233355778888999999999977 99999999999999999 78888


Q ss_pred             ee---CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC-----CCeeEEEEcCCCEEEEEcCCcEEEEEc
Q 021744          146 LE---GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-----GGEVGCMISEGPWIFIGVTNFVKAWNT  217 (308)
Q Consensus       146 ~~---~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~-----~~~v~~~~~~~~~l~~~~d~~i~~wd~  217 (308)
                      +.   +|++.|.+++|+||++.++|++.|.+++|||+.+.++++++..     ...+.|++.++.++.++.+|.|.+++.
T Consensus       228 l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~  307 (603)
T KOG0318|consen  228 LEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNP  307 (603)
T ss_pred             ecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecc
Confidence            87   8999999999999999999999999999999999999999984     345778889777777888999999999


Q ss_pred             CCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeece
Q 021744          218 QTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF  293 (308)
Q Consensus       218 ~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~  293 (308)
                      ...... .+.+|...|+++..+|+  +|++|+.||.|.-|+..++..   ....-+.|...|.. +-+..+.++..+.+.
T Consensus       308 ~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~---~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd  384 (603)
T KOG0318|consen  308 SDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS---DRLAGKGHTNQIKGMAASESGELFTIGWDD  384 (603)
T ss_pred             cCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc---cccccccccceEEEEeecCCCcEEEEecCC
Confidence            988866 88999999999999999  999999999999999998732   11122578888888 666656666666666


Q ss_pred             EEEEe
Q 021744          294 IMFIG  298 (308)
Q Consensus       294 ~i~~~  298 (308)
                      .+...
T Consensus       385 ~l~~~  389 (603)
T KOG0318|consen  385 TLRVI  389 (603)
T ss_pred             eEEEE
Confidence            66655

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=8.7e-29  Score=205.28  Aligned_cols=254  Identities=21%  Similarity=0.313  Sum_probs=204.2

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      +.++++++.|+.+++|+.....            ......+|...  .+.|+|+++. ++++.|+.|++||+.+++... 
T Consensus        21 ~~~l~~~~~~g~i~i~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~-   87 (289)
T cd00200          21 GKLLATGSGDGTIKVWDLETGE------------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR-   87 (289)
T ss_pred             CCEEEEeecCcEEEEEEeeCCC------------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceE-
Confidence            5789999999999999988661            11122344434  6899999988 999999999999998754432 


Q ss_pred             ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744          103 NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~  181 (308)
                      ....+...+..+.+.+++.. ++++.++.|++||+.+. +....+..|...+.+++|+|++.++++++.|+.|++||+++
T Consensus        88 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~  166 (289)
T cd00200          88 TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT  166 (289)
T ss_pred             EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc-EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence            23345556888999998777 45555999999999987 77888888999999999999988899888899999999998


Q ss_pred             CeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEE
Q 021744          182 GQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAW  254 (308)
Q Consensus       182 ~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iw  254 (308)
                      ++.+..+. +...+.++  .++++.++++. ++.|++||+++++.. .+..|...+.++.|+|+  ++++++.||.|++|
T Consensus       167 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~  246 (289)
T cd00200         167 GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW  246 (289)
T ss_pred             cccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEE
Confidence            88888877 44466665  46676777665 999999999988777 56588889999999997  77777779999999


Q ss_pred             EcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEE
Q 021744          255 KFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFI  297 (308)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~  297 (308)
                      |+.++    +++..+..|...+.. .|+|++.+|++++ +..+.+
T Consensus       247 ~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  287 (289)
T cd00200         247 DLRTG----ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI  287 (289)
T ss_pred             EcCCc----eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEe
Confidence            99986    667778888889999 9999988888655 444444

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.8e-30  Score=210.54  Aligned_cols=264  Identities=11%  Similarity=0.188  Sum_probs=216.0

Q ss_pred             CCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC
Q 021744           23 GGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN   99 (308)
Q Consensus        23 ~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~   99 (308)
                      |..|.++||+|.|.+..+|.+....+         ..+...+.||..+  .+.||||.++ ++++.|..+++||+.+++.
T Consensus       233 S~nGkyLAsaSkD~Taiiw~v~~d~~---------~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~  303 (519)
T KOG0293|consen  233 SHNGKYLASASKDSTAIIWIVVYDVH---------FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL  303 (519)
T ss_pred             cCCCeeEeeccCCceEEEEEEecCcc---------eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchh
Confidence            56688999999999999999765521         3455677888888  7999999999 9999999999999999987


Q ss_pred             cccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCc-ccceEEEEEeCCCCEEEEeeCCCcEEEE
Q 021744          100 SNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGH-QKVVSGITLPSGSDKLYSGSKDETVRVW  177 (308)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~dg~v~~w  177 (308)
                      ...-..++...+.+|+|.|+|.. ++|+.|+.|..||+...  .+...++- ...|.+++..+||+++++...|..++++
T Consensus       304 ~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn--~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~  381 (519)
T KOG0293|consen  304 RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN--ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLY  381 (519)
T ss_pred             hhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc--hhhcccccccceeEEEEEcCCCcEEEEEecccceeee
Confidence            65555555667999999999965 99999999999999865  24444443 3579999999999999999999999999


Q ss_pred             eCCCCeEEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCC--EEEEEEeC--C-EEEEEcCC
Q 021744          178 DCASGQCAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQ--VYAMAVGN--D-LLFAGTQD  248 (308)
Q Consensus       178 d~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~--v~~~~~~~--~-~l~~g~~d  248 (308)
                      +.++...+..+..+.++.++  +.+++++++.- +..+++||++....+ .+.+|...  +..-+|-.  + ++++|++|
T Consensus       382 ~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED  461 (519)
T KOG0293|consen  382 NREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSED  461 (519)
T ss_pred             chhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCC
Confidence            99988777777777777766  56788888876 889999999966555 67787653  33444543  3 99999999


Q ss_pred             CeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee--ceEEEEeecC
Q 021744          249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV--SFIMFIGQNN  301 (308)
Q Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~--s~~i~~~~~~  301 (308)
                      +.|+||+..++    +++.++.+|...|++ +|+|....+++|+  +.+|-||...
T Consensus       462 ~kvyIWhr~sg----kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  462 SKVYIWHRISG----KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             ceEEEEEccCC----ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence            99999999998    899999999999999 9999888777665  6666666543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=5.4e-31  Score=200.79  Aligned_cols=259  Identities=15%  Similarity=0.147  Sum_probs=218.2

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      |=.+++++.|+.--+=+-.++            .=-..+.||.++  ....+.+... |+++.|-+-+|||.-++..+  
T Consensus        29 g~flisa~kd~~pmlr~g~tg------------dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel--   94 (334)
T KOG0278|consen   29 GYFLISASKDGKPMLRNGDTG------------DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL--   94 (334)
T ss_pred             ceEEEEeccCCCchhccCCCC------------CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh--
Confidence            557888888876665555544            112356788887  4455556666 99999999999999888766  


Q ss_pred             ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744          103 NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~  181 (308)
                      ....|+.-|..|+|+.+... ++|+.++.+||||++....+..++.+|++.|..+-|....+.++|.+.|++|++||.++
T Consensus        95 hsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT  174 (334)
T KOG0278|consen   95 HSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT  174 (334)
T ss_pred             hhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc
Confidence            55667778999999999865 99999999999999988778889999999999999999889999999999999999999


Q ss_pred             CeEEEEEeCCCeeEEE--EcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcC
Q 021744          182 GQCAGVINLGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN  257 (308)
Q Consensus       182 ~~~~~~~~~~~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~  257 (308)
                      +..++.+..+.+++++  +++|++|.++..+.|.+||..+..++....-+..|.+.+.+|+  .+++|++|..++.||+.
T Consensus       175 gt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~  254 (334)
T KOG0278|consen  175 GTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYN  254 (334)
T ss_pred             CcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEecc
Confidence            9999999988888876  6899999999999999999999888855455678999999999  99999999999999999


Q ss_pred             CCCcccccceec-cccCCCeEE-EEecCCCeEEE-eeceEEEEeecCc
Q 021744          258 VTTNCFEPAASL-KVHTDSNRA-HFSRDVTSLLG-SVSFIMFIGQNNK  302 (308)
Q Consensus       258 ~~~~~~~~~~~~-~~~~~~v~~-~~s~d~~~l~~-s~s~~i~~~~~~~  302 (308)
                      ++    +.+..+ ++|.++|.+ .|+|||..-++ |-+.+|.+||.+-
T Consensus       255 Tg----eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  255 TG----EEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             CC----ceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence            98    555554 799999999 99999987774 4488888888543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=5e-29  Score=219.70  Aligned_cols=227  Identities=18%  Similarity=0.309  Sum_probs=190.9

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCC-CcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEee
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSK-NSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLE  147 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~  147 (308)
                      ++.|+|+|.. ++++.|+.+++|+..+.+ .......+|...+..++|++++.+ ++++.|++|+|||+......+++++
T Consensus       164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~  243 (456)
T KOG0266|consen  164 CVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK  243 (456)
T ss_pred             EEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec
Confidence            7899999999 999999999999996655 122234678888999999999977 8999999999999954437899999


Q ss_pred             CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCc--
Q 021744          148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNT--  221 (308)
Q Consensus       148 ~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~--  221 (308)
                      +|...|++++|+|+++++++|+.|++|++||+++++++..+. |...+.++  .+++.+|++++ |+.|++||+.+++  
T Consensus       244 gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~  323 (456)
T KOG0266|consen  244 GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL  323 (456)
T ss_pred             CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee
Confidence            999999999999999999999999999999999999999999 77777766  46788999877 9999999999999  


Q ss_pred             ee-eeeCCCC--CEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE----EEecCCCeEEEee-
Q 021744          222 DL-SLSGPVG--QVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA----HFSRDVTSLLGSV-  291 (308)
Q Consensus       222 ~~-~~~~~~~--~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~----~~s~d~~~l~~s~-  291 (308)
                      +. .+..+..  +++++.|+|+  ++++++.|+.+++||+...    ..+..+.+|...+++    .+++.+.+++++. 
T Consensus       324 ~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~  399 (456)
T KOG0266|consen  324 CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG----KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE  399 (456)
T ss_pred             eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC----cceeeecccCCcceeEecccccCCCCeEEEEeC
Confidence            33 5555554  4999999999  9999999999999999987    777888888775333    4467888888665 


Q ss_pred             ceEEEEeecC
Q 021744          292 SFIMFIGQNN  301 (308)
Q Consensus       292 s~~i~~~~~~  301 (308)
                      +..|+++.-.
T Consensus       400 d~~v~~~~~~  409 (456)
T KOG0266|consen  400 DGSVYVWDSS  409 (456)
T ss_pred             CceEEEEeCC
Confidence            6666665543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.7e-28  Score=189.04  Aligned_cols=274  Identities=15%  Similarity=0.186  Sum_probs=211.1

Q ss_pred             eEEEeecCCCCCCCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCC
Q 021744           11 RVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNN   87 (308)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~   87 (308)
                      |++.-..++..    |.+|||+|.|+.||+|+...+..+.|.-..        -.+|...  .++++|.|++ |+||.|.
T Consensus        16 r~W~~awhp~~----g~ilAscg~Dk~vriw~~~~~~s~~ck~vl--------d~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen   16 RVWSVAWHPGK----GVILASCGTDKAVRIWSTSSGDSWTCKTVL--------DDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             cEEEEEeccCC----ceEEEeecCCceEEEEecCCCCcEEEEEec--------cccchheeeeeeecCCCcEEEEeeccc
Confidence            67776776632    568999999999999998864334443221        1266666  8999999999 9999999


Q ss_pred             cEEEEECCCCCCcc-cccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCC--CceeeeEeeCcccceEEEEEeCCCC
Q 021744           88 HSNNYRAGNSKNSN-INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGD--GFKLLTQLEGHQKVVSGITLPSGSD  163 (308)
Q Consensus        88 ~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~--~~~~~~~~~~h~~~v~~~~~~~~~~  163 (308)
                      ++-||.-..++... ..+.+|+..|.+++|+++|.+ ++++.|+.|-||.+..  ..+....|++|+..|..+.|+|...
T Consensus        84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d  163 (312)
T KOG0645|consen   84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED  163 (312)
T ss_pred             eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence            99999887655332 245788999999999999988 8999999999999983  3467889999999999999999999


Q ss_pred             EEEEeeCCCcEEEEeCC---CCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEE
Q 021744          164 KLYSGSKDETVRVWDCA---SGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMA  236 (308)
Q Consensus       164 ~l~s~s~dg~v~~wd~~---~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~  236 (308)
                      +|+|+|+|.+|++|.-.   .-++++++. +...+.++  .+.|..|++++ |+++++|-..+.   .-..|+.+++.+.
T Consensus       164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~  240 (312)
T KOG0645|consen  164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVP  240 (312)
T ss_pred             eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC---cchhcccceEeee
Confidence            99999999999999876   246777887 66677776  35688888887 899999976522   2234778999999


Q ss_pred             EeCCEEEEEcCCCeEEEEEcCCCC--cccccce-eccccCCCeEE-EEecC-CCeEEEee-ceEEEEee
Q 021744          237 VGNDLLFAGTQDGAILAWKFNVTT--NCFEPAA-SLKVHTDSNRA-HFSRD-VTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       237 ~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~-~~~~~~~~v~~-~~s~d-~~~l~~s~-s~~i~~~~  299 (308)
                      |....|++++.|+.|++|.-....  +.++++. .-..|...|++ .|.|. ...|++++ +..+-++.
T Consensus       241 W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~  309 (312)
T KOG0645|consen  241 WDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE  309 (312)
T ss_pred             ecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence            994499999999999999876531  2233333 23478999999 99995 34444444 55554443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=7.4e-29  Score=214.55  Aligned_cols=258  Identities=16%  Similarity=0.174  Sum_probs=206.8

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCC-CcEEEEECCCCCCcccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFN-NHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d-~~i~vwd~~~~~~~~~~  103 (308)
                      -.++|++=..|...++.....     ..+|.-.-.     .|.-..++|+..|.- |.|+.. |.+-||+..+...+ ..
T Consensus       277 t~~lvvgFssG~f~LyelP~f-----~lih~LSis-----~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV-lK  345 (893)
T KOG0291|consen  277 TNLLVVGFSSGEFGLYELPDF-----NLIHSLSIS-----DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV-LK  345 (893)
T ss_pred             ceEEEEEecCCeeEEEecCCc-----eEEEEeecc-----cceeeEEEecccCCEEEEcCCccceEEEEEeecccee-ee
Confidence            357888888888888887655     112211000     011116899999998 655544 89999999655443 35


Q ss_pred             cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744          104 NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~  182 (308)
                      +++|...+.++.++|+|.. ++|++||.|+|||...+ -++.+|..|+..|+.+.|+..++.+++.+.||+|+.||+...
T Consensus       346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY  424 (893)
T KOG0291|consen  346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY  424 (893)
T ss_pred             ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence            6778888999999999977 99999999999999999 789999999999999999999999999999999999999999


Q ss_pred             eEEEEEeCCCee--EEEE--cCCCEEEEEc-CC-cEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEE
Q 021744          183 QCAGVINLGGEV--GCMI--SEGPWIFIGV-TN-FVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILA  253 (308)
Q Consensus       183 ~~~~~~~~~~~v--~~~~--~~~~~l~~~~-d~-~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~i  253 (308)
                      +..+++..+.++  .|+.  +.|.++++|. |. .|.+|++.+|+++ .+.+|+++|.+++|+|+  .|++++.|.+|++
T Consensus       425 rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRi  504 (893)
T KOG0291|consen  425 RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRI  504 (893)
T ss_pred             ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEE
Confidence            999999966655  4554  5589999888 66 8999999999999 89999999999999999  9999999999999


Q ss_pred             EEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          254 WKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      ||+-...   ..+.++. +...+.. +|.|||+.|+++. +..|-++.
T Consensus       505 W~if~s~---~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d  548 (893)
T KOG0291|consen  505 WDIFSSS---GTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFD  548 (893)
T ss_pred             EEeeccC---ceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence            9998752   3455554 3445566 9999999998665 54444443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=9.3e-29  Score=206.10  Aligned_cols=261  Identities=12%  Similarity=0.150  Sum_probs=200.7

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      |.++||.+.|+++.++|-.++.+     + .   ...--.+|.+.  +++|+||+.. +|++.|+++||||+.+.+....
T Consensus       202 G~~Fat~gsDgki~iyDGktge~-----v-g---~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t  272 (603)
T KOG0318|consen  202 GSRFATAGSDGKIYIYDGKTGEK-----V-G---ELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVST  272 (603)
T ss_pred             CCeEEEecCCccEEEEcCCCccE-----E-E---EecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEE
Confidence            78999999999999999887711     0 0   11113478877  9999999999 9999999999999988866544


Q ss_pred             ccceeee-eeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744          103 NNRAVIK-TDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       103 ~~~~~~~-~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~  181 (308)
                      ...+..- ....-+.|..+.+++-+.+|+|.++++... ..++.+.||...|+++..+|++++|++|+.||.|.-|+..+
T Consensus       273 ~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~-~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~  351 (603)
T KOG0318|consen  273 WPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDP-SVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS  351 (603)
T ss_pred             eecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCC-ChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCC
Confidence            3333321 123334556777899999999999999999 68999999999999999999999999999999999999876


Q ss_pred             CeEEE-----------EEe-CC------------------------------------------C---------------
Q 021744          182 GQCAG-----------VIN-LG------------------------------------------G---------------  192 (308)
Q Consensus       182 ~~~~~-----------~~~-~~------------------------------------------~---------------  192 (308)
                      +..-+           .+. .+                                          .               
T Consensus       352 g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l  431 (603)
T KOG0318|consen  352 GTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLL  431 (603)
T ss_pred             ccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEE
Confidence            43221           000 00                                          0               


Q ss_pred             ---------------eeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee---eeeCCCCCEEEEEEeCC--EEEEEcCCCeE
Q 021744          193 ---------------EVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGND--LLFAGTQDGAI  251 (308)
Q Consensus       193 ---------------~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~---~~~~~~~~v~~~~~~~~--~l~~g~~dg~i  251 (308)
                                     ...++.+++..+++|. |+.|++|.+...+..   .+..|..+|++++++||  +||+|...+.+
T Consensus       432 ~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkv  511 (603)
T KOG0318|consen  432 QDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKV  511 (603)
T ss_pred             ecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcE
Confidence                           0001234677888877 999999999886543   56789999999999999  99999999999


Q ss_pred             EEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          252 LAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      .+||+.+..   .....+.-|...|.+ +|+|+.+++++++ +-.++++.
T Consensus       512 v~yd~~s~~---~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys  558 (603)
T KOG0318|consen  512 VLYDVASRE---VKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS  558 (603)
T ss_pred             EEEEcccCc---eecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence            999999873   233445569999999 9999999888555 54444443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=7.7e-29  Score=214.47  Aligned_cols=222  Identities=17%  Similarity=0.241  Sum_probs=180.8

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .|.+||||+.|+.|+|||..++            -...++..|+..  .+.|+..|+. ++++-||+||.||+...+...
T Consensus       361 Dgq~iaTG~eDgKVKvWn~~Sg------------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR  428 (893)
T KOG0291|consen  361 DGQLIATGAEDGKVKVWNTQSG------------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR  428 (893)
T ss_pred             CCcEEEeccCCCcEEEEeccCc------------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee
Confidence            3679999999999999999885            123344556666  7899999999 999999999999998776665


Q ss_pred             cccceeeeeeeeeeeecCCce-EEeeCCC-eEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744          102 INNRAVIKTDILCRNWVQGNC-MYGEKCK-FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC  179 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~-~~g~~d~-~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~  179 (308)
                      ....+......+++.-|.|.. ..|+.|. .|++|+++++ +.+..+.||+++|.+++|+|+++.|+|+|.|++|++||+
T Consensus       429 Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~i  507 (893)
T KOG0291|consen  429 TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDI  507 (893)
T ss_pred             eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEe
Confidence            555555555677888888987 4555554 5999999999 899999999999999999999999999999999999998


Q ss_pred             CC-CeEEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-ee----------------e----CCCCCEEE
Q 021744          180 AS-GQCAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SL----------------S----GPVGQVYA  234 (308)
Q Consensus       180 ~~-~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~----------------~----~~~~~v~~  234 (308)
                      -. ...+.++.....+..+  .|+|+.|+++. ||.|.+||.+.+... .+                .    ......++
T Consensus       508 f~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftt  587 (893)
T KOG0291|consen  508 FSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTT  587 (893)
T ss_pred             eccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEE
Confidence            64 4567777766666655  58999999876 999999998765322 11                1    12357899


Q ss_pred             EEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744          235 MAVGND--LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       235 ~~~~~~--~l~~g~~dg~i~iwd~~~~  259 (308)
                      +++++|  .+++|+..+.|++||++++
T Consensus       588 i~ySaDG~~IlAgG~sn~iCiY~v~~~  614 (893)
T KOG0291|consen  588 ICYSADGKCILAGGESNSICIYDVPEG  614 (893)
T ss_pred             EEEcCCCCEEEecCCcccEEEEECchh
Confidence            999999  8999999999999998764

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=3.5e-29  Score=216.05  Aligned_cols=257  Identities=14%  Similarity=0.161  Sum_probs=212.3

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCc--
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS--  100 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~--  100 (308)
                      .+.+|.++..+.+|+++..+.             .-..+.||+..  ++....+|.. +||+.|+++++|.++.+...  
T Consensus       336 ~~~laVATNs~~lr~y~~~~~-------------~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~  402 (775)
T KOG0319|consen  336 ESHLAVATNSPELRLYTLPTS-------------YCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSL  402 (775)
T ss_pred             cceEEEEeCCCceEEEecCCC-------------ceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhh
Confidence            368999999999999976653             11256799888  6666678877 99999999999999544322  


Q ss_pred             -ccccceeeeeeeeeeeecCC-c-eEEeeCCCeEEEEEcCCCc--e--eee----EeeCcccceEEEEEeCCCCEEEEee
Q 021744          101 -NINNRAVIKTDILCRNWVQG-N-CMYGEKCKFLHSWTVGDGF--K--LLT----QLEGHQKVVSGITLPSGSDKLYSGS  169 (308)
Q Consensus       101 -~~~~~~~~~~~~~~~~~~~~-~-~~~g~~d~~i~iwd~~~~~--~--~~~----~~~~h~~~v~~~~~~~~~~~l~s~s  169 (308)
                       .....+|...+.+++++..+ . +++++.|.++++|++...+  .  ...    .-..|...|++++++|+.++++|||
T Consensus       403 ~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S  482 (775)
T KOG0319|consen  403 CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGS  482 (775)
T ss_pred             hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecc
Confidence             22346778888888887666 3 3999999999999997621  1  111    2246999999999999999999999


Q ss_pred             CCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EE
Q 021744          170 KDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LL  242 (308)
Q Consensus       170 ~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l  242 (308)
                      .|++.++|+++..+.+.++. |...+.|+  ++..+.+++++ |++|++|.+.+..++ ++.+|...|..+.|-.+  .|
T Consensus       483 qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~ql  562 (775)
T KOG0319|consen  483 QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQL  562 (775)
T ss_pred             cccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEE
Confidence            99999999999999999998 77788887  46677888776 999999999999998 89999999999999877  99


Q ss_pred             EEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       243 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      ++++.||.|++|++.+.    +++.++..|.+.|++ +-+|...++++++ +..|..|.
T Consensus       563 iS~~adGliKlWnikt~----eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  563 ISAGADGLIKLWNIKTN----ECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             EeccCCCcEEEEeccch----hhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            99999999999999997    999999999999999 9999998887554 55555554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=4.2e-29  Score=220.28  Aligned_cols=254  Identities=19%  Similarity=0.277  Sum_probs=210.0

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      ...+++++.|++|++|+...+           .....++.||.+.  ++++...+.. ++|+.|.++|+||..+++....
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~-----------~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~  286 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNG-----------YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS  286 (537)
T ss_pred             cCeEEecCCCceeEEeecccc-----------eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE
Confidence            467899999999999998887           5556668899998  7888776666 9999999999999999877643


Q ss_pred             ccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744          103 NNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~  182 (308)
                       ..+|...+.++...+ ...++|+.|.+|++|++.++ +.+..+.+|.++|.++..+  +.++++|+.|++|++||+.++
T Consensus       287 -l~gh~stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~-~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~  361 (537)
T KOG0274|consen  287 -LQGHTSSVRCLTIDP-FLLVSGSRDNTVKVWDVTNG-ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG  361 (537)
T ss_pred             -ecCCCceEEEEEccC-ceEeeccCCceEEEEeccCc-ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc
Confidence             335666555544332 24477899999999999999 8999999999999999998  779999999999999999999


Q ss_pred             eEEEEEe-CCCeeEEEEcCC-CEEEEEc-CCcEEEEEcCCC-cee-eeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcC
Q 021744          183 QCAGVIN-LGGEVGCMISEG-PWIFIGV-TNFVKAWNTQTN-TDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFN  257 (308)
Q Consensus       183 ~~~~~~~-~~~~v~~~~~~~-~~l~~~~-d~~i~~wd~~~~-~~~-~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~  257 (308)
                      +++..+. |...+.++..++ ..+++|+ |++|++||+++. +++ ++.+|..-+.++.+....|++++.|+.|++||..
T Consensus       362 ~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~  441 (537)
T KOG0274|consen  362 KCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAE  441 (537)
T ss_pred             eeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecc
Confidence            9999999 889999988777 8888887 999999999999 777 8999999998888887799999999999999999


Q ss_pred             CCCcccccceeccc-cCCCeEE-EEecCCCeEEEee--ceEEEEeec
Q 021744          258 VTTNCFEPAASLKV-HTDSNRA-HFSRDVTSLLGSV--SFIMFIGQN  300 (308)
Q Consensus       258 ~~~~~~~~~~~~~~-~~~~v~~-~~s~d~~~l~~s~--s~~i~~~~~  300 (308)
                      ++    ++++++.+ |...+.+ .+. +...+.++.  ...+|...+
T Consensus       442 ~~----~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~  483 (537)
T KOG0274|consen  442 EG----ECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRS  483 (537)
T ss_pred             cC----ceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEeccc
Confidence            97    78888887 6677777 665 333344444  455554433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=6.5e-28  Score=227.20  Aligned_cols=266  Identities=11%  Similarity=0.151  Sum_probs=195.4

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecC-CCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANN-TWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~-g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      +.++||++.|++|++|+....... ....+  .+.. ...++... +++|+|. +.+ ++++.|++|++||+.+++.+. 
T Consensus       495 g~~latgg~D~~I~iwd~~~~~~~-~~~~~--~~~~-~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~-  569 (793)
T PLN00181        495 GEFFATAGVNKKIKIFECESIIKD-GRDIH--YPVV-ELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVT-  569 (793)
T ss_pred             CCEEEEEeCCCEEEEEECCccccc-ccccc--cceE-EecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEE-
Confidence            578999999999999997542000 00000  0110 11223222 7888764 666 999999999999998775542 


Q ss_pred             ccceeeeeeeeeeeec-CCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEe-CCCCEEEEeeCCCcEEEEeC
Q 021744          103 NNRAVIKTDILCRNWV-QGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLP-SGSDKLYSGSKDETVRVWDC  179 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~-~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~s~dg~v~~wd~  179 (308)
                      ....|...+..+.|++ ++.. ++|+.|+.|++||+.++ ..+..+..+ ..|.++.|+ +++.++++|+.|+.|++||+
T Consensus       570 ~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~  647 (793)
T PLN00181        570 EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-VSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDL  647 (793)
T ss_pred             EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC-cEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence            3456778899999986 5554 89999999999999988 677777754 689999995 56899999999999999999


Q ss_pred             CCCe-EEEEEe-CCCeeEEE-EcCCCEEEEEc-CCcEEEEEcCCC------cee-eeeCCCCCEEEEEEeCC--EEEEEc
Q 021744          180 ASGQ-CAGVIN-LGGEVGCM-ISEGPWIFIGV-TNFVKAWNTQTN------TDL-SLSGPVGQVYAMAVGND--LLFAGT  246 (308)
Q Consensus       180 ~~~~-~~~~~~-~~~~v~~~-~~~~~~l~~~~-d~~i~~wd~~~~------~~~-~~~~~~~~v~~~~~~~~--~l~~g~  246 (308)
                      ++.+ .+..+. |...+.++ +.++.++++++ |++|++||++..      ..+ .+.+|...+.+++|+|+  +|++|+
T Consensus       648 ~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs  727 (793)
T PLN00181        648 RNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS  727 (793)
T ss_pred             CCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence            8765 444554 66777776 56778888766 999999999853      233 78899999999999998  999999


Q ss_pred             CCCeEEEEEcCCCCccc-------ccce--eccccCCCeEE-EEecCCCeEEEee-ceEEEEe
Q 021744          247 QDGAILAWKFNVTTNCF-------EPAA--SLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIG  298 (308)
Q Consensus       247 ~dg~i~iwd~~~~~~~~-------~~~~--~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~  298 (308)
                      .|+.|++|+........       ..+.  ....+...|.+ +|+|++..|++++ +..|.++
T Consensus       728 ~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~  790 (793)
T PLN00181        728 ETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKIL  790 (793)
T ss_pred             CCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEE
Confidence            99999999987542100       0011  12345567888 9999999988665 5555554

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.5e-29  Score=187.90  Aligned_cols=229  Identities=16%  Similarity=0.153  Sum_probs=190.8

Q ss_pred             Cccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCc-eEEeeCCCeEEEEEcCC
Q 021744           63 AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGN-CMYGEKCKFLHSWTVGD  138 (308)
Q Consensus        63 ~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~d~~i~iwd~~~  138 (308)
                      .+..++++  ++.|+-+|++ ++++.|++||+|+...+..+. ...+|...+.....+.++. +++++.|..+.+||+.+
T Consensus        12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik-tYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T   90 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK-TYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT   90 (307)
T ss_pred             eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee-eecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence            44566777  8999999999 999999999999997765542 4456777788888777774 48899999999999999


Q ss_pred             CceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC--CeEEEEEe-CCCeeEEEEcCCCEEEEEc-CCcEEE
Q 021744          139 GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS--GQCAGVIN-LGGEVGCMISEGPWIFIGV-TNFVKA  214 (308)
Q Consensus       139 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~--~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~~  214 (308)
                      + +.++.+.+|.+.|..+.|+.+...+++|+.|.++++||-++  .++++.+. ....+.++-..+..|++|+ ||+++.
T Consensus        91 G-kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRt  169 (307)
T KOG0316|consen   91 G-KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRT  169 (307)
T ss_pred             C-eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEE
Confidence            9 89999999999999999999999999999999999999886  56777776 5566777767777788777 999999


Q ss_pred             EEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCC---eEEEEecCCCeEE
Q 021744          215 WNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDS---NRAHFSRDVTSLL  288 (308)
Q Consensus       215 wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---v~~~~s~d~~~l~  288 (308)
                      ||++.++.. ...+  .+|++++|+++  ..++++.|+++++.|-.++    +++..+++|.+.   +.|+++.....++
T Consensus       170 ydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG----klL~sYkGhkn~eykldc~l~qsdthV~  243 (307)
T KOG0316|consen  170 YDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG----KLLKSYKGHKNMEYKLDCCLNQSDTHVF  243 (307)
T ss_pred             EEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh----HHHHHhcccccceeeeeeeecccceeEE
Confidence            999999887 4444  48999999999  7888999999999999998    889999988764   3446766666666


Q ss_pred             E-eeceEEEEee
Q 021744          289 G-SVSFIMFIGQ  299 (308)
Q Consensus       289 ~-s~s~~i~~~~  299 (308)
                      + |.+..+|+|.
T Consensus       244 sgSEDG~Vy~wd  255 (307)
T KOG0316|consen  244 SGSEDGKVYFWD  255 (307)
T ss_pred             eccCCceEEEEE
Confidence            4 3477777776

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=3.7e-30  Score=208.30  Aligned_cols=214  Identities=17%  Similarity=0.250  Sum_probs=185.5

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG  148 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~  148 (308)
                      .+.|.|+|+. ++|+..|.+.+|+.. .-......+.|...|.++.+++++.. ++|+.+|.|++|+..-.  .++.+++
T Consensus       101 ~v~WtPeGRRLltgs~SGEFtLWNg~-~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn--nVk~~~a  177 (464)
T KOG0284|consen  101 VVRWTPEGRRLLTGSQSGEFTLWNGT-SFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN--NVKIIQA  177 (464)
T ss_pred             eEEEcCCCceeEeecccccEEEecCc-eeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh--hhHHhhH
Confidence            7899999999 999999999999973 22333456889999999999999987 99999999999998754  2445555


Q ss_pred             cc-cceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE-E-cCCCEEEEEc-CCcEEEEEcCCCcee
Q 021744          149 HQ-KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM-I-SEGPWIFIGV-TNFVKAWNTQTNTDL  223 (308)
Q Consensus       149 h~-~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~-~-~~~~~l~~~~-d~~i~~wd~~~~~~~  223 (308)
                      |. ..|++++|+|+...+++||.||+|+|||....+....+. |.-.+.++ + |...++++++ |+.|++||.++++++
T Consensus       178 hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl  257 (464)
T KOG0284|consen  178 HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL  257 (464)
T ss_pred             hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchh
Confidence            54 999999999999999999999999999999888777777 77778877 4 5667788877 889999999999999


Q ss_pred             -eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          224 -SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       224 -~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                       ++..|+..|..+.|+|+  +|++++.|..++++|+++.    +.+.++.+|...+++ .|+|=..-|++++
T Consensus       258 ~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m----kEl~~~r~Hkkdv~~~~WhP~~~~lftsg  325 (464)
T KOG0284|consen  258 ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM----KELFTYRGHKKDVTSLTWHPLNESLFTSG  325 (464)
T ss_pred             hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh----HHHHHhhcchhhheeeccccccccceeec
Confidence             89999999999999999  9999999999999999975    788999999999999 9999766565443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=2.5e-30  Score=205.70  Aligned_cols=217  Identities=18%  Similarity=0.301  Sum_probs=183.7

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC--c
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN--S  100 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~--~  100 (308)
                      ...|++||+|.+|++||.+++           .|+ ..+.+|..+  .+.|+  ..+ ++++.|.++++||+.....  +
T Consensus       247 ~rviisGSSDsTvrvWDv~tg-----------e~l-~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~  312 (499)
T KOG0281|consen  247 ERVIVSGSSDSTVRVWDVNTG-----------EPL-NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITL  312 (499)
T ss_pred             ceEEEecCCCceEEEEeccCC-----------chh-hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHH
Confidence            458999999999999999998           443 345678777  55554  457 9999999999999976542  2


Q ss_pred             ccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744          101 NINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA  180 (308)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~  180 (308)
                      ...+.+|...+..+.|... ..++++.|.+|++|++.+. +.++++.+|+..|.|+.+.  ++++++||.|.+|++||++
T Consensus       313 rrVLvGHrAaVNvVdfd~k-yIVsASgDRTikvW~~st~-efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~  388 (499)
T KOG0281|consen  313 RRVLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWSTSTC-EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE  388 (499)
T ss_pred             HHHHhhhhhheeeeccccc-eEEEecCCceEEEEeccce-eeehhhhcccccceehhcc--CeEEEecCCCceEEEEecc
Confidence            2345778888888887654 5599999999999999999 8999999999999999885  7899999999999999999


Q ss_pred             CCeEEEEEe-CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCce---------e-eeeCCCCCEEEEEEeCCEEEEEcCC
Q 021744          181 SGQCAGVIN-LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTD---------L-SLSGPVGQVYAMAVGNDLLFAGTQD  248 (308)
Q Consensus       181 ~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~---------~-~~~~~~~~v~~~~~~~~~l~~g~~d  248 (308)
                      .|.+++.++ |+.-+.|+-.+.+.+++|. ||+|++||+.++..         + .+..|++.|..+.|..-.+++++.|
T Consensus       389 ~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHd  468 (499)
T KOG0281|consen  389 CGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHD  468 (499)
T ss_pred             ccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCC
Confidence            999999998 8888999988888888876 99999999987642         2 5567899999999976688999999


Q ss_pred             CeEEEEEcCCCC
Q 021744          249 GAILAWKFNVTT  260 (308)
Q Consensus       249 g~i~iwd~~~~~  260 (308)
                      .+|.|||+..+.
T Consensus       469 dtILiWdFl~~~  480 (499)
T KOG0281|consen  469 DTILIWDFLNGP  480 (499)
T ss_pred             CeEEEEEcCCCC
Confidence            999999998764

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.1e-29  Score=190.35  Aligned_cols=224  Identities=14%  Similarity=0.166  Sum_probs=186.0

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEe
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQL  146 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~  146 (308)
                      .++|++....  ++++.||++||||+.....+....+.|+..|.++.+.+..+.  ++++.|++|++|+...+ +.+.++
T Consensus        65 dV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-~Sv~Tf  143 (311)
T KOG0277|consen   65 DVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-NSVQTF  143 (311)
T ss_pred             EeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC-cceEee
Confidence            7899987665  899999999999986555555566788889999999887643  88899999999999988 789999


Q ss_pred             eCcccceEEEEEeC-CCCEEEEeeCCCcEEEEeCCC-CeEEEEEe-CCCeeEEE-E--cCCCEEEEEc-CCcEEEEEcCC
Q 021744          147 EGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCAS-GQCAGVIN-LGGEVGCM-I--SEGPWIFIGV-TNFVKAWNTQT  219 (308)
Q Consensus       147 ~~h~~~v~~~~~~~-~~~~l~s~s~dg~v~~wd~~~-~~~~~~~~-~~~~v~~~-~--~~~~~l~~~~-d~~i~~wd~~~  219 (308)
                      .||...|...+|+| ..+.++++|.|+++++||++. ++.+. +. |..++.|. +  .+...+++|. |+.|+.||++.
T Consensus       144 ~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~  222 (311)
T KOG0277|consen  144 NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN  222 (311)
T ss_pred             cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhh
Confidence            99999999999998 468899999999999999986 55555 55 66677665 3  3566777777 99999999998


Q ss_pred             Ccee--eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee--
Q 021744          220 NTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV--  291 (308)
Q Consensus       220 ~~~~--~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~--  291 (308)
                      -...  .+.+|.-.|+.+.|||.   +|++++.|-+++|||...+.   ..+.+...|...+.. .||+...-.++++  
T Consensus       223 ~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d---s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gW  299 (311)
T KOG0277|consen  223 LRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD---SAIETVDHHTEFVCGLDWSLFDPGQVASTGW  299 (311)
T ss_pred             ccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch---hhhhhhhccceEEeccccccccCceeeeccc
Confidence            6543  78999999999999998   99999999999999998663   667778889999999 9998654444443  


Q ss_pred             ceEEEEee
Q 021744          292 SFIMFIGQ  299 (308)
Q Consensus       292 s~~i~~~~  299 (308)
                      +..+|++.
T Consensus       300 De~l~Vw~  307 (311)
T KOG0277|consen  300 DELLYVWN  307 (311)
T ss_pred             ccceeeec
Confidence            77777765

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=9.9e-28  Score=225.98  Aligned_cols=235  Identities=17%  Similarity=0.203  Sum_probs=187.4

Q ss_pred             ccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCC----Ccccc--cceeeeeeeeeeeecC-C-ceEEeeCCCeEE
Q 021744           64 ATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSK----NSNIN--NRAVIKTDILCRNWVQ-G-NCMYGEKCKFLH  132 (308)
Q Consensus        64 ~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~----~~~~~--~~~~~~~~~~~~~~~~-~-~~~~g~~d~~i~  132 (308)
                      ..+|...  +++|+|+|.+ |+|+.|++|+||++....    .....  ...+...+..+.|.+. + .+++++.|+.|+
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~  558 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ  558 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence            3456666  8999999999 999999999999985321    11000  1112234666777664 3 348899999999


Q ss_pred             EEEcCCCceeeeEeeCcccceEEEEEeC-CCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE-E--cCCCEEEEEc
Q 021744          133 SWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM-I--SEGPWIFIGV  208 (308)
Q Consensus       133 iwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~-~--~~~~~l~~~~  208 (308)
                      +||+.++ +.+..+.+|.+.|++++|+| ++.+|++|+.|++|++||+++++.+..+.....+.++ +  +++.++++|+
T Consensus       559 lWd~~~~-~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs  637 (793)
T PLN00181        559 VWDVARS-QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGS  637 (793)
T ss_pred             EEECCCC-eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEe
Confidence            9999988 78889999999999999996 7889999999999999999999998888866666665 2  3588888877


Q ss_pred             -CCcEEEEEcCCCce-e-eeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCc--ccccceeccccCCCeEE-EEe
Q 021744          209 -TNFVKAWNTQTNTD-L-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTN--CFEPAASLKVHTDSNRA-HFS  281 (308)
Q Consensus       209 -d~~i~~wd~~~~~~-~-~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~v~~-~~s  281 (308)
                       |+.|++||+++... . .+.+|...|.++.|.+. +|++++.|+.|++||++....  ...++..+.+|...+.. .|+
T Consensus       638 ~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s  717 (793)
T PLN00181        638 ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLS  717 (793)
T ss_pred             CCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEc
Confidence             99999999987653 3 67899999999999866 999999999999999975321  12567788899999999 999


Q ss_pred             cCCCeEEEee-ceEEEEee
Q 021744          282 RDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       282 ~d~~~l~~s~-s~~i~~~~  299 (308)
                      |++.+|++++ +..++++.
T Consensus       718 ~~~~~lasgs~D~~v~iw~  736 (793)
T PLN00181        718 VSDGYIATGSETNEVFVYH  736 (793)
T ss_pred             CCCCEEEEEeCCCEEEEEE
Confidence            9999988655 66666655

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.3e-28  Score=206.67  Aligned_cols=251  Identities=14%  Similarity=0.176  Sum_probs=203.5

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN  104 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~  104 (308)
                      -+-+.++-..|.+.+||.++..     ....-.....|.+     +..|-+.-+- ++|+.|..||||+.++.+.+. ..
T Consensus        25 ePw~la~LynG~V~IWnyetqt-----mVksfeV~~~PvR-----a~kfiaRknWiv~GsDD~~IrVfnynt~ekV~-~F   93 (794)
T KOG0276|consen   25 EPWILAALYNGDVQIWNYETQT-----MVKSFEVSEVPVR-----AAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK-TF   93 (794)
T ss_pred             CceEEEeeecCeeEEEecccce-----eeeeeeecccchh-----hheeeeccceEEEecCCceEEEEecccceeeE-Ee
Confidence            4568888899999999988750     0000001111111     3456566666 999999999999999887653 34


Q ss_pred             ceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC-CCCEEEEeeCCCcEEEEeCCCC
Q 021744          105 RAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASG  182 (308)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~v~~wd~~~~  182 (308)
                      ..|...++++..+|.-.+ ++++.|-.|++||.+.+..+.++++||+.-|.+++|+| |.+.++|++-|++|++|.+.+.
T Consensus        94 eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~  173 (794)
T KOG0276|consen   94 EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP  173 (794)
T ss_pred             eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC
Confidence            567788999999999866 89999999999999988788999999999999999999 4588999999999999999999


Q ss_pred             eEEEEEe-CCCeeEEEE----cCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEE
Q 021744          183 QCAGVIN-LGGEVGCMI----SEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILA  253 (308)
Q Consensus       183 ~~~~~~~-~~~~v~~~~----~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~i  253 (308)
                      .+..+++ |+.-+.|+.    .+..+|++|. |.+|++||..+.+++ ++.+|...|..+.|+|.  ++++|++||+|+|
T Consensus       174 ~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvri  253 (794)
T KOG0276|consen  174 HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRI  253 (794)
T ss_pred             CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEE
Confidence            9999998 778888883    3456899887 779999999999998 89999999999999999  9999999999999


Q ss_pred             EEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          254 WKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      |+..+-    +...++.-.-..+++ +-.+.+..++.+.
T Consensus       254 Whs~Ty----~lE~tLn~gleRvW~I~~~k~~~~i~vG~  288 (794)
T KOG0276|consen  254 WNSKTY----KLEKTLNYGLERVWCIAAHKGDGKIAVGF  288 (794)
T ss_pred             ecCcce----ehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence            999885    666667666677777 6666555555444

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=8.9e-27  Score=205.14  Aligned_cols=254  Identities=11%  Similarity=0.169  Sum_probs=182.5

Q ss_pred             CCceEEecCCCeEEEeecCCCCC-CCCCcccccCCCCCCccccccc--eeEEec-CCCe-eeccCCCcEEEEECCCCCC-
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNR-FPCPYLHRELPLPPAATANGAA--AKRFAN-NTWG-RNNNFNNHSNNYRAGNSKN-   99 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~~~~~~~~~gh~~~--~i~~s~-~g~~-~s~~~d~~i~vwd~~~~~~-   99 (308)
                      ++.+++++.+.....|+...+.. .+..-.-+....+..+.||.+.  +++|+| ++.+ ++|+.|++|++||+.++.. 
T Consensus        32 ~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~  111 (493)
T PTZ00421         32 CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT  111 (493)
T ss_pred             CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc
Confidence            35578888888888898654410 0000000011223446799888  899999 7878 9999999999999965421 


Q ss_pred             -----cccccceeeeeeeeeeeecCC-c-eEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCC
Q 021744          100 -----SNINNRAVIKTDILCRNWVQG-N-CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE  172 (308)
Q Consensus       100 -----~~~~~~~~~~~~~~~~~~~~~-~-~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg  172 (308)
                           ......+|...+..+.|+|.+ . +++++.|+.|+|||+.++ +.+..+.+|...|.+++|+|++.+|++++.|+
T Consensus       112 ~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg-~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg  190 (493)
T PTZ00421        112 QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG-KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDK  190 (493)
T ss_pred             cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC-eEEEEEcCCCCceEEEEEECCCCEEEEecCCC
Confidence                 112345677789999999975 3 488999999999999998 78888999999999999999999999999999


Q ss_pred             cEEEEeCCCCeEEEEEe-CCCee--EEE-EcCCCEEE-EEc----CCcEEEEEcCCCce-e-eeeC-CCCCEEEEEEeCC
Q 021744          173 TVRVWDCASGQCAGVIN-LGGEV--GCM-ISEGPWIF-IGV----TNFVKAWNTQTNTD-L-SLSG-PVGQVYAMAVGND  240 (308)
Q Consensus       173 ~v~~wd~~~~~~~~~~~-~~~~v--~~~-~~~~~~l~-~~~----d~~i~~wd~~~~~~-~-~~~~-~~~~v~~~~~~~~  240 (308)
                      +|++||+++++.+..+. |....  .++ .+++..++ +|.    |+.|++||+++... . .... ....+....|+++
T Consensus       191 ~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d  270 (493)
T PTZ00421        191 KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDED  270 (493)
T ss_pred             EEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCC
Confidence            99999999999888877 43322  333 35555555 442    68999999987643 2 2222 2345666678887


Q ss_pred             --EEEEEc-CCCeEEEEEcCCCCcccccceecc-ccCCCeEE-EEecCC
Q 021744          241 --LLFAGT-QDGAILAWKFNVTTNCFEPAASLK-VHTDSNRA-HFSRDV  284 (308)
Q Consensus       241 --~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~-~~s~d~  284 (308)
                        +|++++ .|+.|++||+.++    +++.... .+..+... +|.|.-
T Consensus       271 ~~~L~lggkgDg~Iriwdl~~~----~~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        271 TNLLYIGSKGEGNIRCFELMNE----RLTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             CCEEEEEEeCCCeEEEEEeeCC----ceEEEeeccCCCCCcceEecccc
Confidence              666666 6999999999986    4444333 23445556 777754

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=7.6e-28  Score=199.00  Aligned_cols=253  Identities=17%  Similarity=0.173  Sum_probs=201.3

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCcccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      ....+|+|  ..+.+++..++           .+.....+-.... ++.|-.||.. |.|...|.|+|+|.++ +.+...
T Consensus        40 ~d~aVt~S--~rvqly~~~~~-----------~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iLR~  105 (487)
T KOG0310|consen   40 YDFAVTSS--VRVQLYSSVTR-----------SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVILRQ  105 (487)
T ss_pred             CceEEecc--cEEEEEecchh-----------hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHHHH
Confidence            34455554  46777877665           2222111111222 6899999999 9999999999999544 445556


Q ss_pred             cceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCC
Q 021744          104 NRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCA  180 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~  180 (308)
                      ...|..++....|+|.+..  ++|+.|+.+++||+.+. .....+.+|++.|.+.+|+|.. ..++|||+||+|++||++
T Consensus       106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a-~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR  184 (487)
T KOG0310|consen  106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA-YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR  184 (487)
T ss_pred             HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc-EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence            7889999999999998854  88999999999999998 5566899999999999999854 578999999999999999


Q ss_pred             CC-eEEEEEeCCCeeEEE--EcCCCEEEEEcCCcEEEEEcCCCcee--eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEE
Q 021744          181 SG-QCAGVINLGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILA  253 (308)
Q Consensus       181 ~~-~~~~~~~~~~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~~~~--~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~i  253 (308)
                      +. ..+.++.|+.++..+  .|.|.++++++.+.+++||+.++...  .+..|...|+|+.+..+  .|++|+.|+.|++
T Consensus       185 ~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKV  264 (487)
T KOG0310|consen  185 SLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKV  264 (487)
T ss_pred             cCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEE
Confidence            87 888899999999877  47889999999999999999966544  44559999999999987  9999999999999


Q ss_pred             EEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEe
Q 021744          254 WKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIG  298 (308)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~  298 (308)
                      ||+.+-    +.+..+. ..++|.+ +.+||++.++++. +..+.+.
T Consensus       265 fd~t~~----Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  265 FDTTNY----KVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             EEccce----EEEEeee-cccceeeEEecCCCceEEEecccceeeee
Confidence            997764    6677665 4566766 9999999888776 4444433

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=1.5e-28  Score=216.76  Aligned_cols=226  Identities=19%  Similarity=0.337  Sum_probs=189.7

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCcccc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      ++.++++||.|+++|+||..++            .....+.||.....++.-...+ ++|+.|.+|++|+++++..+...
T Consensus       260 ~~~~lvsgS~D~t~rvWd~~sg------------~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~  327 (537)
T KOG0274|consen  260 GGDKLVSGSTDKTERVWDCSTG------------ECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLL  327 (537)
T ss_pred             CCCEEEEEecCCcEEeEecCCC------------cEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEe
Confidence            3678999999999999998877            3345566888875556666667 99999999999999988766433


Q ss_pred             cceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC-
Q 021744          104 NRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG-  182 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~-  182 (308)
                       .+|...|.++... .+..++|+.|+.|++||+.++ ++++++.+|...|.++.+.+. ..+++|+.|++|++||+++. 
T Consensus       328 -~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~-~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~  403 (537)
T KOG0274|consen  328 -RGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTG-KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR  403 (537)
T ss_pred             -ccccccEEEEEec-CCEEEEEecCceEEEEEhhhc-eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh
Confidence             3388889888887 446699999999999999999 899999999999999988765 89999999999999999999 


Q ss_pred             eEEEEEe-CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeC-CCCCEEEEEEeCCEEEEEcCCCeEEEEEcCC
Q 021744          183 QCAGVIN-LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSG-PVGQVYAMAVGNDLLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       183 ~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~-~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~  258 (308)
                      +++.++. +..-+..+...+++|+++. |++|++||..++++. .+.+ |...|.++++....+++++.||.+++||+++
T Consensus       404 ~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~  483 (537)
T KOG0274|consen  404 KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRS  483 (537)
T ss_pred             hhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEeccc
Confidence            9999998 5555666677888999877 999999999999988 6666 6688999998844888999999999999999


Q ss_pred             CCcccccceecc
Q 021744          259 TTNCFEPAASLK  270 (308)
Q Consensus       259 ~~~~~~~~~~~~  270 (308)
                      +    ++...+-
T Consensus       484 ~----~~~~~l~  491 (537)
T KOG0274|consen  484 G----TLIRTLL  491 (537)
T ss_pred             C----chhhhhh
Confidence            7    5555553

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=7.5e-28  Score=210.97  Aligned_cols=229  Identities=14%  Similarity=0.155  Sum_probs=188.6

Q ss_pred             ccccc--eeEEecCCCe-eeccCCCcEEEEECCC--------------------------------CC------------
Q 021744           66 ANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGN--------------------------------SK------------   98 (308)
Q Consensus        66 gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~--------------------------------~~------------   98 (308)
                      .|.++  ++.||+||+| |+|+.|+.||||.+..                                ..            
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            78888  9999999999 9999999999998843                                00            


Q ss_pred             ---------------CcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC-CC
Q 021744           99 ---------------NSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GS  162 (308)
Q Consensus        99 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~  162 (308)
                                     .+.....+|...|..+.|+.++.+++++.|++||||++... ++++.|. |.+-|+|++|+| |.
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~-~CL~~F~-HndfVTcVaFnPvDD  422 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK-ECLKVFS-HNDFVTCVAFNPVDD  422 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc-ceeeEEe-cCCeeEEEEecccCC
Confidence                           00011246667788889999988899999999999999988 8898887 999999999999 67


Q ss_pred             CEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee---eeeCC------CC
Q 021744          163 DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL---SLSGP------VG  230 (308)
Q Consensus       163 ~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~---~~~~~------~~  230 (308)
                      +++++|+-|+.|+||++...+.+.-...+.-|+++  .|+|+..++|+ +|.+++|+....+.+   .+.-+      ..
T Consensus       423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~  502 (712)
T KOG0283|consen  423 RYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK  502 (712)
T ss_pred             CcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc
Confidence            99999999999999999988877666666777765  59999999998 999999999887655   11111      22


Q ss_pred             CEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccccCC---CeEEEEecCCCeEEEee-ceEEEEeec
Q 021744          231 QVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTD---SNRAHFSRDVTSLLGSV-SFIMFIGQN  300 (308)
Q Consensus       231 ~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~v~~~~s~d~~~l~~s~-s~~i~~~~~  300 (308)
                      .|+.+.|.|.   .+++.+.|..|+|||.+..    .++..++++..   .+.+.|+.||+++++++ +..+|+|.+
T Consensus       503 rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~----~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  503 RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK----DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             eeeeeEecCCCCCeEEEecCCCceEEEeccch----hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence            7999999876   6888899999999999876    77777776543   45669999999999665 888898885

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=5.6e-27  Score=207.60  Aligned_cols=237  Identities=10%  Similarity=0.089  Sum_probs=171.3

Q ss_pred             ecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecC-CCe-eeccCCCcEEEEECCCCCC-c------
Q 021744           32 DTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANN-TWG-RNNNFNNHSNNYRAGNSKN-S------  100 (308)
Q Consensus        32 ~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~-g~~-~s~~~d~~i~vwd~~~~~~-~------  100 (308)
                      |+.++.+++|+..+.            +....+.+|...  +++|+|+ +.+ |+|+.|++|+|||+.++.. .      
T Consensus        50 GG~~gvI~L~~~~r~------------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p  117 (568)
T PTZ00420         50 GGLIGAIRLENQMRK------------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDP  117 (568)
T ss_pred             CCceeEEEeeecCCC------------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccc
Confidence            445667777765543            223346788877  8999997 667 9999999999999975421 1      


Q ss_pred             ccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 021744          101 NINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (308)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd  178 (308)
                      .....+|...+..+.|+|++..  ++++.|+.|++||+.++ +.+..+. |...|.+++|+|++.+|++++.|++|++||
T Consensus       118 ~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg-~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD  195 (568)
T PTZ00420        118 QCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE-KRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIID  195 (568)
T ss_pred             eEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC-cEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEE
Confidence            1123557777999999998854  67899999999999988 5666665 668899999999999999999999999999


Q ss_pred             CCCCeEEEEEe-CCCee--EEEE-----cCCCEEEE-EcCC----cEEEEEcCC-Cceee---eeCCCCCEEEEEEeCC-
Q 021744          179 CASGQCAGVIN-LGGEV--GCMI-----SEGPWIFI-GVTN----FVKAWNTQT-NTDLS---LSGPVGQVYAMAVGND-  240 (308)
Q Consensus       179 ~~~~~~~~~~~-~~~~v--~~~~-----~~~~~l~~-~~d~----~i~~wd~~~-~~~~~---~~~~~~~v~~~~~~~~-  240 (308)
                      +++++.+.++. |.+.+  .+++     +++.+|++ |.++    +|++||++. .+++.   +..+.+.+......++ 
T Consensus       196 ~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg  275 (568)
T PTZ00420        196 PRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG  275 (568)
T ss_pred             CCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence            99999988887 54432  2222     57777776 4453    799999995 44442   2233333333333333 


Q ss_pred             -EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCC
Q 021744          241 -LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVT  285 (308)
Q Consensus       241 -~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~  285 (308)
                       ++++|+.|+.|++|++..+..  ..+..+. +..+... +|.|...
T Consensus       276 ~l~lsGkGD~tIr~~e~~~~~~--~~l~~~~-s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        276 LIYLIGKGDGNCRYYQHSLGSI--RKVNEYK-SCSPFRSFGFLPKQI  319 (568)
T ss_pred             CEEEEEECCCeEEEEEccCCcE--Eeecccc-cCCCccceEEccccc
Confidence             888999999999999987521  3333333 5667777 8988754

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.5e-27  Score=185.21  Aligned_cols=243  Identities=12%  Similarity=0.156  Sum_probs=193.6

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      ..+++.+|-|++||+|+++..+          ...+.....|.++  +++|+.||.. ++|+.|+.+++||+.++|..  
T Consensus        40 ~~~~~A~SWD~tVR~wevq~~g----------~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~--  107 (347)
T KOG0647|consen   40 DNLLAAGSWDGTVRIWEVQNSG----------QLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS--  107 (347)
T ss_pred             CceEEecccCCceEEEEEecCC----------cccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee--
Confidence            4678899999999999988631          3344445567777  8999999999 99999999999999999765  


Q ss_pred             ccceeeeeeeeeeeecCCc--e-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744          103 NNRAVIKTDILCRNWVQGN--C-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC  179 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~--~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~  179 (308)
                      ....|...+.+|.|.+...  | ++|+.|++|+.||++.. .++.++. -.+.++++..-  ..+++.+..++.|.+|++
T Consensus       108 ~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~vynL  183 (347)
T KOG0647|consen  108 QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQ-LPERVYAADVL--YPMAVVATAERHIAVYNL  183 (347)
T ss_pred             eeeecccceeEEEEecCCCcceeEecccccceeecccCCC-Ceeeeee-ccceeeehhcc--CceeEEEecCCcEEEEEc
Confidence            6778889999999988775  4 89999999999999988 6777776 45677777664  357888889999999999


Q ss_pred             CCCeEEEEE-e--CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCc---eeeeeCCC---------CCEEEEEEeCC-
Q 021744          180 ASGQCAGVI-N--LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNT---DLSLSGPV---------GQVYAMAVGND-  240 (308)
Q Consensus       180 ~~~~~~~~~-~--~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~---~~~~~~~~---------~~v~~~~~~~~-  240 (308)
                      +++...... +  ..-.++|+  +.+....+.|+ +|.+.+..+....   ..+++.|.         ..|++|+|+|. 
T Consensus       184 ~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h  263 (347)
T KOG0647|consen  184 ENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH  263 (347)
T ss_pred             CCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc
Confidence            875433221 1  33344554  56666667777 9999888887642   22566665         26889999999 


Q ss_pred             -EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE
Q 021744          241 -LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL  288 (308)
Q Consensus       241 -~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~  288 (308)
                       .|++.+.||++.+||-...    ..+.+.+.|..+|.+ +|+.+|.+++
T Consensus       264 gtlvTaGsDGtf~FWDkdar----~kLk~s~~~~qpItcc~fn~~G~ifa  309 (347)
T KOG0647|consen  264 GTLVTAGSDGTFSFWDKDAR----TKLKTSETHPQPITCCSFNRNGSIFA  309 (347)
T ss_pred             ceEEEecCCceEEEecchhh----hhhhccCcCCCccceeEecCCCCEEE
Confidence             9999999999999998876    678888899999999 9999999987

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.9e-27  Score=207.17  Aligned_cols=256  Identities=14%  Similarity=0.158  Sum_probs=207.1

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      .+-|.++--.|.|++||..-+            .+-..+..|.++  .+.|+|++.. +||+.|.+|+||+..+.+.+ .
T Consensus        21 rPwILtslHsG~IQlWDYRM~------------tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl-f   87 (1202)
T KOG0292|consen   21 RPWILTSLHSGVIQLWDYRMG------------TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL-F   87 (1202)
T ss_pred             CCEEEEeecCceeeeehhhhh------------hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh-h
Confidence            467888889999999998876            334446678888  8999999999 99999999999999877655 3


Q ss_pred             ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744          103 NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~  181 (308)
                      .+.+|-..++.+.|++.-.- ++++.|.+|+||+..++ +.+..+.||..-|.|..|+|....++|+|-|-+|++||+..
T Consensus        88 tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr-~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisG  166 (1202)
T KOG0292|consen   88 TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR-KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISG  166 (1202)
T ss_pred             hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC-ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecc
Confidence            56788889999999987655 89999999999999999 89999999999999999999999999999999999999863


Q ss_pred             CeEEE---------------------------EE--e-CCCeeE--EEEcCCCEEEEEc-CCcEEEEEcCCCcee---ee
Q 021744          182 GQCAG---------------------------VI--N-LGGEVG--CMISEGPWIFIGV-TNFVKAWNTQTNTDL---SL  225 (308)
Q Consensus       182 ~~~~~---------------------------~~--~-~~~~v~--~~~~~~~~l~~~~-d~~i~~wd~~~~~~~---~~  225 (308)
                      -+...                           ++  . |..-+.  ++.|.-.++++|+ |..|++|.+...+.-   +.
T Consensus       167 LRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtc  246 (1202)
T KOG0292|consen  167 LRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTC  246 (1202)
T ss_pred             hhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhh
Confidence            11100                           00  0 111122  1234456788877 789999998765433   67


Q ss_pred             eCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee--ceEEEEee
Q 021744          226 SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV--SFIMFIGQ  299 (308)
Q Consensus       226 ~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~--s~~i~~~~  299 (308)
                      .+|.+.|.++.|+|.  ++++.++|+.|++||+...    ..++++.......++ +-.|...+++++.  ...+|...
T Consensus       247 rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR----t~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkle  321 (1202)
T KOG0292|consen  247 RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR----TSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLE  321 (1202)
T ss_pred             hcccCCcceEEecCccceeEecCCCccEEEEecccc----cceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence            899999999999996  9999999999999999987    778888877777788 8899988887776  34444444

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=3e-26  Score=190.02  Aligned_cols=231  Identities=19%  Similarity=0.303  Sum_probs=192.5

Q ss_pred             ccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCC
Q 021744           64 ATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDG  139 (308)
Q Consensus        64 ~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~  139 (308)
                      +.+|...  +++|+|+++. ++++.|+.|++|++.+++.. .....|...+..+.+.+++.. ++++.++.|++|++.++
T Consensus         5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~   83 (289)
T cd00200           5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL-RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG   83 (289)
T ss_pred             hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE-EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence            4467666  8999999999 99999999999999766532 233445555778899998854 88889999999999987


Q ss_pred             ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEE
Q 021744          140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAW  215 (308)
Q Consensus       140 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~w  215 (308)
                       +.+..+..|...+.++.|+++++++++++.|+.+.+||+++++....+. +...+.++  .+++++++++. ++.|++|
T Consensus        84 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~  162 (289)
T cd00200          84 -ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW  162 (289)
T ss_pred             -cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence             6788888999999999999998888998889999999999988888887 66667766  35678888888 9999999


Q ss_pred             EcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          216 NTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       216 d~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      |+++++.. .+..|...+.++.|+|+  .+++++.|+.|++||++.+    +.+..+..|...+.. .|+|++.+++++.
T Consensus       163 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  238 (289)
T cd00200         163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG----KCLGTLRGHENGVNSVAFSPDGYLLASGS  238 (289)
T ss_pred             EccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC----ceecchhhcCCceEEEEEcCCCcEEEEEc
Confidence            99987766 67788889999999999  8888888999999999986    667777788889999 9999988887665


Q ss_pred             -ceEEEEeec
Q 021744          292 -SFIMFIGQN  300 (308)
Q Consensus       292 -s~~i~~~~~  300 (308)
                       +..++++..
T Consensus       239 ~~~~i~i~~~  248 (289)
T cd00200         239 EDGTIRVWDL  248 (289)
T ss_pred             CCCcEEEEEc
Confidence             555655553

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=7.8e-27  Score=183.01  Aligned_cols=213  Identities=17%  Similarity=0.186  Sum_probs=179.0

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCc
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGH  149 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h  149 (308)
                      .+.|+|.++. +.+++||++++||+...+..  ....+..++..|+|.+....++|+-||.|+.+|+.++.  ...+-.|
T Consensus        18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~--~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~--~~~igth   93 (323)
T KOG1036|consen   18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLK--LKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGN--EDQIGTH   93 (323)
T ss_pred             eEEEcCcCCcEEEEeccCcEEEEeccchhhh--hheecCCceeeeeccCCceEEEeccCceEEEEEecCCc--ceeeccC
Confidence            6899998888 88899999999999766333  44567778999999998888999999999999999883  3345669


Q ss_pred             ccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCc-------
Q 021744          150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNT-------  221 (308)
Q Consensus       150 ~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~-------  221 (308)
                      ..+|.++.+.+....+++||.|++|++||.+....+..+..+..+.++...+..|++|. +..+.+||+++..       
T Consensus        94 ~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~re  173 (323)
T KOG1036|consen   94 DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRE  173 (323)
T ss_pred             CCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhcc
Confidence            99999999999888999999999999999998777778888888889987777777755 8899999998641       


Q ss_pred             ------------------------------------------eeeeeCCC---------CCEEEEEEeCC--EEEEEcCC
Q 021744          222 ------------------------------------------DLSLSGPV---------GQVYAMAVGND--LLFAGTQD  248 (308)
Q Consensus       222 ------------------------------------------~~~~~~~~---------~~v~~~~~~~~--~l~~g~~d  248 (308)
                                                                ...++.|.         .+|++|+|+|-  .|++|+.|
T Consensus       174 S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD  253 (323)
T KOG1036|consen  174 SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD  253 (323)
T ss_pred             ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCC
Confidence                                                      00233342         28999999998  99999999


Q ss_pred             CeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      |.|.+||+.+.    +.+..+......|.. +|+.||..|+.+.
T Consensus       254 G~V~~Wd~~~r----Krl~q~~~~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  254 GIVNIWDLFNR----KRLKQLAKYETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             ceEEEccCcch----hhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence            99999999997    667888877777888 9999999999655

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=9.5e-28  Score=189.63  Aligned_cols=256  Identities=15%  Similarity=0.168  Sum_probs=208.0

Q ss_pred             CCCceEEecCCCeEEEeecCCCC-CCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCN-RFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~-~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~  100 (308)
                      .+.++++||.||-|.|||.-++. |....|.     ....+.-+..+  |+.|+.|... |+|+.||.|++|.+.+++.+
T Consensus       224 DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ-----Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~Cl  298 (508)
T KOG0275|consen  224 DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ-----AQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCL  298 (508)
T ss_pred             CCceEeeccccceeeeehhccchhhhhhhhh-----hhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHH
Confidence            37799999999999999988772 1111121     11223344555  8999999999 99999999999999999999


Q ss_pred             ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744          101 NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC  179 (308)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~  179 (308)
                      ....+.|.+.+.++.|+.++.. ++++.|.++++.-++++ +.+++++||...|+...|.++|..+++++.||+|++|+.
T Consensus       299 RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG-K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~  377 (508)
T KOG0275|consen  299 RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG-KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHG  377 (508)
T ss_pred             HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc-hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecC
Confidence            8888999999999999999966 89999999999999999 899999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEe---CCCeeEEE--Ec-CCCEEEEEc-CCcEEEEEcCCCceeeeeC---CCCCEEEEEEeCC--EEEEEcC
Q 021744          180 ASGQCAGVIN---LGGEVGCM--IS-EGPWIFIGV-TNFVKAWNTQTNTDLSLSG---PVGQVYAMAVGND--LLFAGTQ  247 (308)
Q Consensus       180 ~~~~~~~~~~---~~~~v~~~--~~-~~~~l~~~~-d~~i~~wd~~~~~~~~~~~---~~~~v~~~~~~~~--~l~~g~~  247 (308)
                      ++.+++.+++   .+.++..+  .| +...++++. .+++.+.++...-...+..   ..+...+.+.+|.  ++.+.++
T Consensus       378 KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigE  457 (508)
T KOG0275|consen  378 KTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGE  457 (508)
T ss_pred             cchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEcc
Confidence            9999999998   33455555  33 345566665 8899999987544444432   2345667778888  8999999


Q ss_pred             CCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEe
Q 021744          248 DGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGS  290 (308)
Q Consensus       248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s  290 (308)
                      |+.++.|.+.++    .+..++..|...+-. +-.|....+++-
T Consensus       458 D~vlYCF~~~sG----~LE~tl~VhEkdvIGl~HHPHqNllAsY  497 (508)
T KOG0275|consen  458 DGVLYCFSVLSG----KLERTLPVHEKDVIGLTHHPHQNLLASY  497 (508)
T ss_pred             CcEEEEEEeecC----ceeeeeecccccccccccCcccchhhhh
Confidence            999999999998    667778888877766 778877666643

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=5.8e-26  Score=175.15  Aligned_cols=227  Identities=14%  Similarity=0.238  Sum_probs=178.1

Q ss_pred             Cccccccc--eeEEecC-CCe-eeccCCCcEEEEECCCCCCcc---cccceeeeeeeeeeeecCCce-EEeeCCCeEEEE
Q 021744           63 AATANGAA--AKRFANN-TWG-RNNNFNNHSNNYRAGNSKNSN---INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSW  134 (308)
Q Consensus        63 ~~~gh~~~--~i~~s~~-g~~-~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iw  134 (308)
                      .+.+|.+.  .++++|- |.. ||++.|+.||+|+...+....   ..-..|+..++.++++|.|++ ++++.|.++.||
T Consensus         9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw   88 (312)
T KOG0645|consen    9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIW   88 (312)
T ss_pred             eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEe
Confidence            45677775  8999999 887 999999999999997543221   122468888999999999988 889999999999


Q ss_pred             EcCCC-ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC---eEEEEEe-CCCeeEEE-E-cCCCEEEEE
Q 021744          135 TVGDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG---QCAGVIN-LGGEVGCM-I-SEGPWIFIG  207 (308)
Q Consensus       135 d~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~---~~~~~~~-~~~~v~~~-~-~~~~~l~~~  207 (308)
                      .-..+ .+.+..++||+..|.+++|+++|++||+|++|++|-+|.+..+   ++...++ |...+..+ + |...+|+++
T Consensus        89 ~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~  168 (312)
T KOG0645|consen   89 KKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSC  168 (312)
T ss_pred             ecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEe
Confidence            87644 3778899999999999999999999999999999999998753   5566666 55566544 3 667788877


Q ss_pred             c-CCcEEEEEcCCC---cee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-E
Q 021744          208 V-TNFVKAWNTQTN---TDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-H  279 (308)
Q Consensus       208 ~-d~~i~~wd~~~~---~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~  279 (308)
                      + |++|++|+-..+   ++. ++.+|...|++++|++.  .|+++++|++|+||.+.+.        --..|...+.. .
T Consensus       169 SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--------~~~~~sr~~Y~v~  240 (312)
T KOG0645|consen  169 SYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--------LSGMHSRALYDVP  240 (312)
T ss_pred             ccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC--------cchhcccceEeee
Confidence            6 999999987633   333 89999999999999997  9999999999999987643        01136677776 8


Q ss_pred             EecCCCeEE-EeeceEEEEee
Q 021744          280 FSRDVTSLL-GSVSFIMFIGQ  299 (308)
Q Consensus       280 ~s~d~~~l~-~s~s~~i~~~~  299 (308)
                      |. ++ .|+ ++++..|.+.+
T Consensus       241 W~-~~-~IaS~ggD~~i~lf~  259 (312)
T KOG0645|consen  241 WD-NG-VIASGGGDDAIRLFK  259 (312)
T ss_pred             ec-cc-ceEeccCCCEEEEEE
Confidence            87 44 444 44454444443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.5e-26  Score=190.06  Aligned_cols=263  Identities=14%  Similarity=0.160  Sum_probs=205.4

Q ss_pred             CCceEEecCCCeEEEeecCCCCCC--CCCc---cc-ccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCC
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRF--PCPY---LH-RELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGN   96 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~--~~~~---~~-~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~   96 (308)
                      +.+..+++.|++|--|++.++...  ..+-   +. ...|...+..+|...  ++++++||++ |+|+.|..|.||+..+
T Consensus       154 ~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t  233 (479)
T KOG0299|consen  154 DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT  233 (479)
T ss_pred             ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcc
Confidence            567899999999999999887432  1111   11 111222221377666  8999999999 9999999999999998


Q ss_pred             CCCcccccceeeeeeeeeeeecCC-ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEE
Q 021744           97 SKNSNINNRAVIKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVR  175 (308)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~  175 (308)
                      .+.... ..+|.+.|..++|-... ..++++.|..|++|+++.. ..+.++.+|++.|.++.....++.+..|+.|++++
T Consensus       234 ~ehv~~-~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~-s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~r  311 (479)
T KOG0299|consen  234 LEHVKV-FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL-SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVR  311 (479)
T ss_pred             cchhhc-ccccccceeeeeeecCccceeeeecCCceEEEehhHh-HHHHHHhCCccceeeechhcccceEEeccccceeE
Confidence            877643 57788888888887665 4589999999999999988 78899999999999999887777777778999999


Q ss_pred             EEeCCCCeEEEEEeCCCeeEEE-EcCCCEEEEEc-CCcEEEEEcCCCcee-e-eeCC-----------CCCEEEEEEeCC
Q 021744          176 VWDCASGQCAGVINLGGEVGCM-ISEGPWIFIGV-TNFVKAWNTQTNTDL-S-LSGP-----------VGQVYAMAVGND  240 (308)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~-d~~i~~wd~~~~~~~-~-~~~~-----------~~~v~~~~~~~~  240 (308)
                      +|++.....+.-..+...+.|+ +.+...+++|+ +|.|.+|++.+.+++ + -.+|           +.+|++++..|.
T Consensus       312 lwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~  391 (479)
T KOG0299|consen  312 LWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG  391 (479)
T ss_pred             EEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEeccc
Confidence            9999655444444466667666 56777777777 899999999888765 2 1122           238999999988


Q ss_pred             --EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          241 --LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       241 --~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                        ++++|+.+|.|++|-+..+...+.++..+. -.+.|+. +|+++|+.++++.
T Consensus       392 sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  392 SDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             CceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEec
Confidence              999999999999999998854456666666 5778999 9999999877655

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.2e-26  Score=197.28  Aligned_cols=223  Identities=14%  Similarity=0.182  Sum_probs=191.7

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG  148 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~  148 (308)
                      ++.++|.... +++-+.|.|.||+.++..... .......+++.+.|-.-.+- ++|+.|..|++|+.++. +.++.|..
T Consensus        18 sVd~HPtePw~la~LynG~V~IWnyetqtmVk-sfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~-ekV~~FeA   95 (794)
T KOG0276|consen   18 SVDFHPTEPWILAALYNGDVQIWNYETQTMVK-SFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG-EKVKTFEA   95 (794)
T ss_pred             eeecCCCCceEEEeeecCeeEEEecccceeee-eeeecccchhhheeeeccceEEEecCCceEEEEecccc-eeeEEeec
Confidence            7999999999 889999999999998764432 33444556888888877766 89999999999999999 89999999


Q ss_pred             cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC-eEEEEEe-CCCeeEEEE--c-CCCEEEEEc-CCcEEEEEcCCCce
Q 021744          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG-QCAGVIN-LGGEVGCMI--S-EGPWIFIGV-TNFVKAWNTQTNTD  222 (308)
Q Consensus       149 h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~-~~~~~~~-~~~~v~~~~--~-~~~~l~~~~-d~~i~~wd~~~~~~  222 (308)
                      |.+-|++++.+|...+++|+|.|-+|++||.+.+ .+.+++. |..-+.++.  | |.+.+++++ |++|++|.+.+..+
T Consensus        96 H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~  175 (794)
T KOG0276|consen   96 HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP  175 (794)
T ss_pred             cccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC
Confidence            9999999999999999999999999999999875 6677777 666777664  3 466788777 99999999998877


Q ss_pred             e-eeeCCCCCEEEEEEeCC----EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEE
Q 021744          223 L-SLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIM  295 (308)
Q Consensus       223 ~-~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i  295 (308)
                      . ++.+|...|+|+.+-+.    +|++|++|..|+|||..+.    .+++++++|..-|+. .|.|.=..+++++ +.++
T Consensus       176 nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk----~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTv  251 (794)
T KOG0276|consen  176 NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK----SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTV  251 (794)
T ss_pred             ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH----HHHHHhhcccccceEEEecCCCcEEEEecCCccE
Confidence            6 89999999999999764    9999999999999999997    999999999999999 9999877777554 6666


Q ss_pred             EEee
Q 021744          296 FIGQ  299 (308)
Q Consensus       296 ~~~~  299 (308)
                      -+|.
T Consensus       252 riWh  255 (794)
T KOG0276|consen  252 RIWN  255 (794)
T ss_pred             EEec
Confidence            6654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=4.8e-27  Score=180.80  Aligned_cols=257  Identities=11%  Similarity=0.070  Sum_probs=198.4

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      -|.+|.|++.|.+..||-..++            .....+.||+++  ++.+.-+.++ ++|+.|.++++||+++|+.+ 
T Consensus        21 eGDLlFscaKD~~~~vw~s~nG------------erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~l-   87 (327)
T KOG0643|consen   21 EGDLLFSCAKDSTPTVWYSLNG------------ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQL-   87 (327)
T ss_pred             CCcEEEEecCCCCceEEEecCC------------ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEE-
Confidence            4678999999999999998877            234568899999  8888888889 99999999999999999876 


Q ss_pred             cccceeeeeeeeeeeecCCceEEe------eCCCeEEEEEcCCC------ceeeeEeeCcccceEEEEEeCCCCEEEEee
Q 021744          102 INNRAVIKTDILCRNWVQGNCMYG------EKCKFLHSWTVGDG------FKLLTQLEGHQKVVSGITLPSGSDKLYSGS  169 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~g------~~d~~i~iwd~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s  169 (308)
                       ........+..+.|+++|+.+..      +..+.|.++|++..      +++...+..+.+.++.+-|.|-++.|++|.
T Consensus        88 -a~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh  166 (327)
T KOG0643|consen   88 -ATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH  166 (327)
T ss_pred             -EEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec
Confidence             33444556899999999977433      33478899999832      256777788899999999999999999999


Q ss_pred             CCCcEEEEeCCCCeEEEEE-e-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EE
Q 021744          170 KDETVRVWDCASGQCAGVI-N-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LL  242 (308)
Q Consensus       170 ~dg~v~~wd~~~~~~~~~~-~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l  242 (308)
                      +||.|..||+++++.+... + |...++.+  +++..++++++ |.+-++||.++.+.+.......+|++.+++|.  .+
T Consensus       167 e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~V  246 (327)
T KOG0643|consen  167 EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHV  246 (327)
T ss_pred             CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceE
Confidence            9999999999998655444 3 66777766  57888999887 99999999999998855556789999999997  44


Q ss_pred             EEE-cCCC-eEEEEEcCCCCc--------ccccceeccccCCCeEE-EEecCCCeEEEee-ceEE
Q 021744          243 FAG-TQDG-AILAWKFNVTTN--------CFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIM  295 (308)
Q Consensus       243 ~~g-~~dg-~i~iwd~~~~~~--------~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i  295 (308)
                      +.| +++- .|.-=+.+.++-        ..+.+..+++|-++|++ +|+|+|+...+++ +..+
T Consensus       247 ilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~V  311 (327)
T KOG0643|consen  247 ILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYV  311 (327)
T ss_pred             EecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceE
Confidence            444 4331 111111121110        01456677899999999 9999998777655 4433

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2e-26  Score=196.87  Aligned_cols=254  Identities=15%  Similarity=0.180  Sum_probs=200.4

Q ss_pred             eEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccc
Q 021744           29 STADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNR  105 (308)
Q Consensus        29 ~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~  105 (308)
                      .+..+....|++|+..++.            .......++..  ++.++++|.+ |.|..+|.|.|||.+..+.+.....
T Consensus       190 ~laValg~~vylW~~~s~~------------v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~  257 (484)
T KOG0305|consen  190 VLAVALGQSVYLWSASSGS------------VTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG  257 (484)
T ss_pred             eEEEEecceEEEEecCCCc------------eEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC
Confidence            3444557799999998881            11111111222  7999999999 9999999999999977766544444


Q ss_pred             eeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEE
Q 021744          106 AVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA  185 (308)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~  185 (308)
                      .|...+-++++. .....+|+.|+.|..+|++........+.+|...|..++|++|+.++++|+.|+.+.|||....+++
T Consensus       258 ~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~  336 (484)
T KOG0305|consen  258 SHASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK  336 (484)
T ss_pred             CcCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence            467777777776 4456889999999999999884445558899999999999999999999999999999999777777


Q ss_pred             EEEe-CCCeeEEE--Ec-CCCEEEEEc---CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEE--EcCCCeEEEE
Q 021744          186 GVIN-LGGEVGCM--IS-EGPWIFIGV---TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFA--GTQDGAILAW  254 (308)
Q Consensus       186 ~~~~-~~~~v~~~--~~-~~~~l~~~~---d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~--g~~dg~i~iw  254 (308)
                      ..+. |...+.++  +| ...+||+|.   |++|++||..+++.+........|.+|.|++.  -|++  |..++.|.||
T Consensus       337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw  416 (484)
T KOG0305|consen  337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLW  416 (484)
T ss_pred             EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEE
Confidence            6665 88888877  33 366788754   89999999999999965556789999999998  3433  5567889999


Q ss_pred             EcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-c--eEEEEee
Q 021744          255 KFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-S--FIMFIGQ  299 (308)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s--~~i~~~~  299 (308)
                      ++.+.    +++..+.+|...|.. +++|||..+++++ +  +.+|...
T Consensus       417 ~~ps~----~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f  461 (484)
T KOG0305|consen  417 KYPSM----KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF  461 (484)
T ss_pred             ecccc----ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence            99995    889999999999999 9999999998554 4  4444433

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=1.6e-27  Score=181.96  Aligned_cols=221  Identities=15%  Similarity=0.173  Sum_probs=185.1

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN  104 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~  104 (308)
                      ..+.|+++.|=+-++||+-++           ..+.....-|--.+++|+.|.++ ++|+.++.+||+|++..+......
T Consensus        71 a~~aasaaadftakvw~a~tg-----------delhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~  139 (334)
T KOG0278|consen   71 ATRAASAAADFTAKVWDAVTG-----------DELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEI  139 (334)
T ss_pred             hhhhhhhcccchhhhhhhhhh-----------hhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhh
Confidence            356788999999999998887           12222112222227999999999 999999999999998887776677


Q ss_pred             ceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCe
Q 021744          105 RAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ  183 (308)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~  183 (308)
                      .+|...++.+.|.....+ ++...|++||+||.+++ +.++++. -+.+|+++.++++|++|.+ ...+.|++||..+..
T Consensus       140 ~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg-t~v~sL~-~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~  216 (334)
T KOG0278|consen  140 SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTG-TEVQSLE-FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFG  216 (334)
T ss_pred             cCCCCcceeEEEeccCceEEeeccCCceEEEEeccC-cEEEEEe-cCCCCcceeeccCCCEEEE-ecCceeEEecccccc
Confidence            889999999999988877 77789999999999999 7777777 5689999999999986655 456789999999999


Q ss_pred             EEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-e-eeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEc
Q 021744          184 CAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-S-LSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF  256 (308)
Q Consensus       184 ~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~-~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~  256 (308)
                      .++.++.+..+.+.  .|+...+++|. |..++.||..+++.+ . .++|.++|.|+.|+|+  ..++|++||+|++|..
T Consensus       217 ~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt  296 (334)
T KOG0278|consen  217 LLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT  296 (334)
T ss_pred             ceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence            99999988877755  57777777776 899999999999988 4 3899999999999999  8999999999999998


Q ss_pred             CCCC
Q 021744          257 NVTT  260 (308)
Q Consensus       257 ~~~~  260 (308)
                      ..++
T Consensus       297 ~~~~  300 (334)
T KOG0278|consen  297 TPGK  300 (334)
T ss_pred             cCCC
Confidence            7753

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.1e-26  Score=204.35  Aligned_cols=234  Identities=16%  Similarity=0.162  Sum_probs=203.7

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG  148 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~  148 (308)
                      .++|+|.... .++-..|.|++||..-+..+ .....|.++|+.+.|+|...+ ++|+.|-.|++|+..+. +++.++.|
T Consensus        14 glsFHP~rPwILtslHsG~IQlWDYRM~tli-~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r-rclftL~G   91 (1202)
T KOG0292|consen   14 GLSFHPKRPWILTSLHSGVIQLWDYRMGTLI-DRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR-RCLFTLLG   91 (1202)
T ss_pred             ceecCCCCCEEEEeecCceeeeehhhhhhHH-hhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc-eehhhhcc
Confidence            6899999999 99999999999999655333 234568888999999999966 99999999999999998 89999999


Q ss_pred             cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCc---
Q 021744          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNT---  221 (308)
Q Consensus       149 h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~---  221 (308)
                      |-+-|+.+.|++.-.+++|+|.|-+|+||+..+.+++..+. |..-+.|.  .|...++++++ |.+|++||+..-.   
T Consensus        92 HlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~  171 (1202)
T KOG0292|consen   92 HLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKN  171 (1202)
T ss_pred             ccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccC
Confidence            99999999999999999999999999999999999999998 77777776  46688888887 9999999985210   


Q ss_pred             -------------------------e--eeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecccc
Q 021744          222 -------------------------D--LSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH  272 (308)
Q Consensus       222 -------------------------~--~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  272 (308)
                                               .  ..+.+|...|+-++|+|.  ++++|++|+.|++|.+...+.  -.+.+..+|
T Consensus       172 ~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa--WEvDtcrgH  249 (1202)
T KOG0292|consen  172 KAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA--WEVDTCRGH  249 (1202)
T ss_pred             CCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc--eeehhhhcc
Confidence                                     1  146689999999999998  999999999999999987654  456778899


Q ss_pred             CCCeEE-EEecCCCeEEEee---ceEEEEeecCceeEEeC
Q 021744          273 TDSNRA-HFSRDVTSLLGSV---SFIMFIGQNNKGVVCYR  308 (308)
Q Consensus       273 ~~~v~~-~~s~d~~~l~~s~---s~~i~~~~~~~~~~~~~  308 (308)
                      .+.|++ -|.|...++++.+   ++.+|-+.....+.|||
T Consensus       250 ~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr  289 (1202)
T KOG0292|consen  250 YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR  289 (1202)
T ss_pred             cCCcceEEecCccceeEecCCCccEEEEecccccceeeee
Confidence            999999 9999988888776   78888888888999997

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=6.1e-26  Score=196.54  Aligned_cols=260  Identities=15%  Similarity=0.124  Sum_probs=211.2

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN  104 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~  104 (308)
                      +.++.++..+.+++|+..+..   |        ......+  -. +..|-|.+++ ++|...|.+.++|+.....+. ..
T Consensus       385 ~~~~~Sga~~SikiWn~~t~k---c--------iRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E-ti  450 (888)
T KOG0306|consen  385 SILLASGAGESIKIWNRDTLK---C--------IRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVE-TI  450 (888)
T ss_pred             ceeeeecCCCcEEEEEccCcc---e--------eEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhh-hh
Confidence            344444557899999988651   1        0000001  12 5788899999 999999999999998776553 44


Q ss_pred             ceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCC-----Cce-ee------eEeeCcccceEEEEEeCCCCEEEEeeCC
Q 021744          105 RAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGD-----GFK-LL------TQLEGHQKVVSGITLPSGSDKLYSGSKD  171 (308)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~-----~~~-~~------~~~~~h~~~v~~~~~~~~~~~l~s~s~d  171 (308)
                      ..|...+..+...|++.. ++|+.|.+|++||..-     +.+ ..      ++++ -++.|.|++++||+++|+.+--|
T Consensus       451 ~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLd  529 (888)
T KOG0306|consen  451 RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLD  529 (888)
T ss_pred             hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEecc
Confidence            589999999999999965 9999999999999641     111 11      1222 35789999999999999999999


Q ss_pred             CcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEE
Q 021744          172 ETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFA  244 (308)
Q Consensus       172 g~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~  244 (308)
                      .+|++|-+.+-+....+. |.-|+.|+  +++.+++++|+ |..|++|-+.-|.+. .+.+|.+.|.++.|.|.  .+++
T Consensus       530 nTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt  609 (888)
T KOG0306|consen  530 NTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFT  609 (888)
T ss_pred             CeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEE
Confidence            999999999988766665 88899987  68999999988 999999999999998 89999999999999999  8999


Q ss_pred             EcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEeecCceeE
Q 021744          245 GTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQNNKGVV  305 (308)
Q Consensus       245 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~~~~~~~  305 (308)
                      ++.|+.|+-||-..-    +.++.+.+|...|++ +.+|+|.++++++ +..|-+|...+..+
T Consensus       610 ~gKD~kvKqWDg~kF----e~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~  668 (888)
T KOG0306|consen  610 CGKDGKVKQWDGEKF----EEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEIL  668 (888)
T ss_pred             ecCcceEEeechhhh----hhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcce
Confidence            999999999999884    899999999999999 9999999999766 56676666555443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=4.8e-27  Score=190.59  Aligned_cols=246  Identities=13%  Similarity=0.185  Sum_probs=195.8

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      ..++|++.|..|++|+.....          ......+.|..++  .+.|.+++.+ ++++.|+.+++|+++..+... .
T Consensus       188 dtlatgg~Dr~Ik~W~v~~~k----------~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~-T  256 (459)
T KOG0288|consen  188 DTLATGGSDRIIKLWNVLGEK----------SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH-T  256 (459)
T ss_pred             chhhhcchhhhhhhhhcccch----------hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhh-h
Confidence            579999999999999977651          1233344555555  7999999999 999999999999998776543 4


Q ss_pred             cceeeeeeeeeeeecCCc-eEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744          104 NRAVIKTDILCRNWVQGN-CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~-~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~  182 (308)
                      +.+|...+.++.|..... .++|+.|.+|++||+... .+.+++.. ...+..+..+  ...++||..|++|++||+++.
T Consensus       257 LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~-~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~  332 (459)
T KOG0288|consen  257 LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA-YCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSA  332 (459)
T ss_pred             hcccccceeeehhhccccceeeccccchhhhhhhhhh-heeccccc-cccccceEec--ceeeeecccccceEEEeccCC
Confidence            556999999999988876 599999999999999987 56555442 3445556555  557899999999999999999


Q ss_pred             eEEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCC----CCCEEEEEEeCC--EEEEEcCCCeEE
Q 021744          183 QCAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGP----VGQVYAMAVGND--LLFAGTQDGAIL  252 (308)
Q Consensus       183 ~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~----~~~v~~~~~~~~--~l~~g~~dg~i~  252 (308)
                      .+.......+.++++  ..++..+.+++ |.++.+.|+++.+.. .+.+.    ....+.+.|||+  |+++|+.||.|+
T Consensus       333 ~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~  412 (459)
T KOG0288|consen  333 DKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVY  412 (459)
T ss_pred             ceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEE
Confidence            999999988899887  46777777666 999999999998876 33321    234788999999  999999999999


Q ss_pred             EEEcCCCCcccccceeccccCC--CeEE-EEecCCCeEEEee
Q 021744          253 AWKFNVTTNCFEPAASLKVHTD--SNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       253 iwd~~~~~~~~~~~~~~~~~~~--~v~~-~~s~d~~~l~~s~  291 (308)
                      ||++.++    ++...+.....  .|.+ +|+|.|..|+++.
T Consensus       413 iW~v~tg----KlE~~l~~s~s~~aI~s~~W~~sG~~Llsad  450 (459)
T KOG0288|consen  413 IWSVFTG----KLEKVLSLSTSNAAITSLSWNPSGSGLLSAD  450 (459)
T ss_pred             EEEccCc----eEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence            9999998    55555553333  5888 9999999998654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=7.3e-26  Score=182.00  Aligned_cols=221  Identities=14%  Similarity=0.196  Sum_probs=175.2

Q ss_pred             ceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCC------
Q 021744           28 LSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSK------   98 (308)
Q Consensus        28 ~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~------   98 (308)
                      .++++|.|.++++|....+.-.        .......+||...  +++..++|.. ++|+.|.+|+||+.++..      
T Consensus       161 ~fvsas~Dqtl~Lw~~~~~~~~--------~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~  232 (423)
T KOG0313|consen  161 LFVSASMDQTLRLWKWNVGENK--------VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELES  232 (423)
T ss_pred             eEEEecCCceEEEEEecCchhh--------hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccc
Confidence            5999999999999987765110        1111222399988  8999999999 999999999999942110      


Q ss_pred             ------------------CcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC
Q 021744           99 ------------------NSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS  160 (308)
Q Consensus        99 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~  160 (308)
                                        .+.....+|...|..+.|++.+...+++.|.+|+.||+.++ ..+.++.+ ...+.+++++|
T Consensus       233 ~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg-~~~~~~~~-~ksl~~i~~~~  310 (423)
T KOG0313|consen  233 SSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETG-GLKSTLTT-NKSLNCISYSP  310 (423)
T ss_pred             cchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecc-cceeeeec-CcceeEeeccc
Confidence                              11123467888899999999778899999999999999999 66666664 57899999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCe---EEEEEe-CCCeeEEE--EcCCCE-EEEEc-CCcEEEEEcCCCc-ee-eeeCCCC
Q 021744          161 GSDKLYSGSKDETVRVWDCASGQ---CAGVIN-LGGEVGCM--ISEGPW-IFIGV-TNFVKAWNTQTNT-DL-SLSGPVG  230 (308)
Q Consensus       161 ~~~~l~s~s~dg~v~~wd~~~~~---~~~~~~-~~~~v~~~--~~~~~~-l~~~~-d~~i~~wd~~~~~-~~-~~~~~~~  230 (308)
                      ...+|++|+.|..+++||.+++.   ..+++. |..-+..+  +|.+.+ |++++ |+++++||+|+.. ++ .+.+|.+
T Consensus       311 ~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D  390 (423)
T KOG0313|consen  311 LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND  390 (423)
T ss_pred             ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc
Confidence            99999999999999999999753   223333 77777666  355554 44565 9999999999876 44 8999999


Q ss_pred             CEEEEEEeCC-EEEEEcCCCeEEEEEcCC
Q 021744          231 QVYAMAVGND-LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       231 ~v~~~~~~~~-~l~~g~~dg~i~iwd~~~  258 (308)
                      .|.++.|... .+++|+.|.+|+|+....
T Consensus       391 Kvl~vdW~~~~~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  391 KVLSVDWNEGGLIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             eEEEEeccCCceEEeccCcceEEEecccc
Confidence            9999999988 999999999999997554

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=9e-27  Score=184.12  Aligned_cols=223  Identities=15%  Similarity=0.175  Sum_probs=186.4

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCccc-------ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCce
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI-------NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFK  141 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~  141 (308)
                      |..|+|||++ ++|+-||-|.+|+..+++....       ....+...+.++.|+.+... ++|+.||.|++|.+.++ +
T Consensus       218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG-~  296 (508)
T KOG0275|consen  218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG-Q  296 (508)
T ss_pred             heeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc-h
Confidence            7899999999 9999999999999988864322       22345566999999999877 89999999999999999 8


Q ss_pred             eeeEee-CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEE
Q 021744          142 LLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWN  216 (308)
Q Consensus       142 ~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd  216 (308)
                      +++.|. .|+..|+++.|+.|+..+++++.|.++++.-+++|++++.+. |..-+...  .++|..+++++ ||+|++|+
T Consensus       297 ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~  376 (508)
T KOG0275|consen  297 CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWH  376 (508)
T ss_pred             HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEec
Confidence            888887 899999999999999999999999999999999999999998 55555543  57899888765 99999999


Q ss_pred             cCCCcee-eee--CCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceecc----ccCCCeEEEEecCCCe
Q 021744          217 TQTNTDL-SLS--GPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLK----VHTDSNRAHFSRDVTS  286 (308)
Q Consensus       217 ~~~~~~~-~~~--~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~v~~~~s~d~~~  286 (308)
                      .++.++. +++  +...+|+++..-|.   .++.+...++|+|.++..     +.++++.    .....|++..||.|.+
T Consensus       377 ~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-----QvVrsfsSGkREgGdFi~~~lSpkGew  451 (508)
T KOG0275|consen  377 GKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-----QVVRSFSSGKREGGDFINAILSPKGEW  451 (508)
T ss_pred             CcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-----eEEeeeccCCccCCceEEEEecCCCcE
Confidence            9999988 444  44567888888776   888899999999999986     6677765    2345677799999999


Q ss_pred             EEEee-ceEEEEee
Q 021744          287 LLGSV-SFIMFIGQ  299 (308)
Q Consensus       287 l~~s~-s~~i~~~~  299 (308)
                      +.+.+ +..+|-..
T Consensus       452 iYcigED~vlYCF~  465 (508)
T KOG0275|consen  452 IYCIGEDGVLYCFS  465 (508)
T ss_pred             EEEEccCcEEEEEE
Confidence            98655 66665443

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=3.1e-25  Score=170.34  Aligned_cols=248  Identities=11%  Similarity=0.084  Sum_probs=200.0

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCCCc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~  100 (308)
                      .|..+|+++.|+++++|+....          +......++||.+.  .++++|..+-  ++++.|++|++||+..+++.
T Consensus        31 ~g~~lasgs~dktv~v~n~e~~----------r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~  100 (313)
T KOG1407|consen   31 DGTKLASGSFDKTVSVWNLERD----------RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT  100 (313)
T ss_pred             cCceeeecccCCceEEEEecch----------hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE
Confidence            4678999999999999998865          12334456788877  7788766554  99999999999999877665


Q ss_pred             ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744          101 NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC  179 (308)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~  179 (308)
                        .....+..-....++|+|.. +.++.|..|...|.++. +.+...+ ..-.+..++|+.++.+++.....|.|.|-..
T Consensus       101 --~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~-~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsy  176 (313)
T KOG1407|consen  101 --ARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTY-KIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSY  176 (313)
T ss_pred             --EEeeccCcceEEEEcCCCCEEEEecCcccEEEEEeccc-ceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEec
Confidence              23333344556788998866 88999999999999987 5555444 5667888999987788777777799999999


Q ss_pred             CCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEE
Q 021744          180 ASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAIL  252 (308)
Q Consensus       180 ~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~  252 (308)
                      ..-++++.++ |+....|+  .|+|+++++|+ |-.+.+||+...-+. .+..+.-+|+.++|+.+  +||++++|..|-
T Consensus       177 psLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~ID  256 (313)
T KOG1407|consen  177 PSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFID  256 (313)
T ss_pred             cccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEE
Confidence            9999999998 77666665  48999999998 899999999877666 67788899999999999  999999999999


Q ss_pred             EEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          253 AWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       253 iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      |=+++++    ..+..++ +.++... +|+|...+|+-++
T Consensus       257 IA~vetG----d~~~eI~-~~~~t~tVAWHPk~~LLAyA~  291 (313)
T KOG1407|consen  257 IAEVETG----DRVWEIP-CEGPTFTVAWHPKRPLLAYAC  291 (313)
T ss_pred             eEecccC----CeEEEee-ccCCceeEEecCCCceeeEEe
Confidence            9999998    5566664 5667777 9999988887555

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1.8e-25  Score=192.14  Aligned_cols=253  Identities=13%  Similarity=0.197  Sum_probs=203.1

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc---eeEEec-CCCe-eeccCCCcEEEEECCCCCCc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA---AKRFAN-NTWG-RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~---~i~~s~-~g~~-~s~~~d~~i~vwd~~~~~~~  100 (308)
                      +..++++|.|+++++|+-...+          .....++.+|.+.   .+++.+ ++.. ++|+.|.+|.+|.+....++
T Consensus        25 ~~~i~s~sRd~t~~vw~~~~~~----------~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~   94 (745)
T KOG0301|consen   25 GVCIISGSRDGTVKVWAKKGKQ----------YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL   94 (745)
T ss_pred             CeEEeecCCCCceeeeeccCcc----------cccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCch
Confidence            4579999999999999865440          2223455666665   366664 3333 99999999999999877665


Q ss_pred             ccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744          101 NINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA  180 (308)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~  180 (308)
                      . .+.+|+..|.++....++..++|+.|.++++|-..   ++...+++|+..|++++.-|++ .++|||.|++|++|.- 
T Consensus        95 ~-~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~---~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~-  168 (745)
T KOG0301|consen   95 Y-TLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG---ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG-  168 (745)
T ss_pred             h-hhhccccceeeeecCCcCceEecccccceEEecch---hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC-
Confidence            3 66889998988888888888999999999999865   4466799999999999999887 8999999999999975 


Q ss_pred             CCeEEEEEe-CCCeeEEE--EcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEE
Q 021744          181 SGQCAGVIN-LGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK  255 (308)
Q Consensus       181 ~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd  255 (308)
                       ++.++++. |...++.+  .++..++-++.||.|++|++......++.+|..-+++++..++  .++++++|++++||+
T Consensus       169 -~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~  247 (745)
T KOG0301|consen  169 -GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWK  247 (745)
T ss_pred             -CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEee
Confidence             77888888 77888876  3555666666799999999954445599999999999995544  999999999999999


Q ss_pred             cCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEEEeecC
Q 021744          256 FNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMFIGQNN  301 (308)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~~~~~  301 (308)
                      ..      ++.+.+.-....+++ .+-++|+.++++++..++++...
T Consensus       248 ~~------e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  248 KD------ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             cC------ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence            77      445666656667888 88889999999999999887754

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=2.8e-25  Score=192.51  Aligned_cols=263  Identities=15%  Similarity=0.203  Sum_probs=204.4

Q ss_pred             eEEecCCCeEEEeecCCCCCC-CCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744           29 STADTRQKVCNYWRAGKCNRF-PCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN  104 (308)
Q Consensus        29 ~~s~s~d~~i~~W~~~~~~~~-~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~  104 (308)
                      +++ -.+.++.++........ |.+..    .......||...  +++++.+... +||+ .+++++|+..+.+.+....
T Consensus       338 lv~-l~nNtv~~ysl~~s~~~~p~~~~----~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~  411 (888)
T KOG0306|consen  338 LVL-LANNTVEWYSLENSGKTSPEADR----TSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTIT  411 (888)
T ss_pred             EEE-eecCceEEEEeccCCCCCccccc----cceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEec
Confidence            444 66778888775542000 11111    111234578777  8999999888 6655 5679999998887664333


Q ss_pred             ceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC--
Q 021744          105 RAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS--  181 (308)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~--  181 (308)
                      ..   .+.++.|.|.+++ +.|...|.+.+||+... ..+.+.++|.+.|++++..||+..+++||.|.+|++||..-  
T Consensus       412 ~~---y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~  487 (888)
T KOG0306|consen  412 CG---YILASKFVPGDRYIVLGTKNGELQVFDLASA-SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVV  487 (888)
T ss_pred             cc---cEEEEEecCCCceEEEeccCCceEEEEeehh-hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEe
Confidence            32   5777888888877 88999999999999988 78888999999999999999999999999999999998752  


Q ss_pred             ---CeEE--------EEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEE
Q 021744          182 ---GQCA--------GVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFA  244 (308)
Q Consensus       182 ---~~~~--------~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~  244 (308)
                         +...        .+++.+..+.|+  +||+++|+++- |+++++|-+.+.+.. .+.+|.-||.||.++||  .+++
T Consensus       488 ~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivT  567 (888)
T KOG0306|consen  488 SVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVT  567 (888)
T ss_pred             ccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEe
Confidence               1111        234455667766  68999999998 999999999998877 89999999999999999  9999


Q ss_pred             EcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEEEeecCceeE
Q 021744          245 GTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMFIGQNNKGVV  305 (308)
Q Consensus       245 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~~~~~~~~~  305 (308)
                      |+.|..|++|-+.-+    .+.+++.+|...|.+ .|-|+..++.+++-......+..+.+.
T Consensus       568 gSADKnVKiWGLdFG----DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe  625 (888)
T KOG0306|consen  568 GSADKNVKIWGLDFG----DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE  625 (888)
T ss_pred             ccCCCceEEeccccc----hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh
Confidence            999999999999987    889999999999999 999987777777733333333344333

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=8.8e-26  Score=192.72  Aligned_cols=234  Identities=12%  Similarity=0.174  Sum_probs=189.4

Q ss_pred             CCCCCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCC
Q 021744           20 GGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGN   96 (308)
Q Consensus        20 ~~~~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~   96 (308)
                      ++..-.+.++.||+.|+.|++|+.....-      ..+.|-....+.|..+  .++..-+++. +++|.|-+|++|+...
T Consensus        31 q~da~~~ryLfTgGRDg~i~~W~~~~d~~------~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~  104 (735)
T KOG0308|consen   31 QLDAPNGRYLFTGGRDGIIRLWSVTQDSN------EPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHK  104 (735)
T ss_pred             cccCCCCceEEecCCCceEEEeccccccC------CcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeeccc
Confidence            33334456899999999999999775410      0112223345678888  7788888878 9999999999999976


Q ss_pred             CCCc-ccccceeeeeeeeeee-ecCCce-EEeeCCCeEEEEEcCCCc---------eeeeEee-CcccceEEEEEeCCCC
Q 021744           97 SKNS-NINNRAVIKTDILCRN-WVQGNC-MYGEKCKFLHSWTVGDGF---------KLLTQLE-GHQKVVSGITLPSGSD  163 (308)
Q Consensus        97 ~~~~-~~~~~~~~~~~~~~~~-~~~~~~-~~g~~d~~i~iwd~~~~~---------~~~~~~~-~h~~~v~~~~~~~~~~  163 (308)
                      .... ...++.|...|.++++ .++... ++|+-|+.|.+||++++.         .....+. |+..+|++++-++.+.
T Consensus       105 ~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t  184 (735)
T KOG0308|consen  105 DNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT  184 (735)
T ss_pred             CcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce
Confidence            5422 2245778888999998 455444 899999999999999662         1122333 8899999999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEe
Q 021744          164 KLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVG  238 (308)
Q Consensus       164 ~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~  238 (308)
                      .+++|+..+.+++||.++.+.+..+. |...+.++  ..+|..+++++ |++|++||+....++ ++..|...|+++..+
T Consensus       185 ~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~  264 (735)
T KOG0308|consen  185 IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSS  264 (735)
T ss_pred             EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeC
Confidence            99999999999999999999888888 88888887  47788888665 999999999999888 899999999999999


Q ss_pred             CC--EEEEEcCCCeEEEEEcCCC
Q 021744          239 ND--LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       239 ~~--~l~~g~~dg~i~iwd~~~~  259 (308)
                      |+  .+.+|+.||.|..=|+++.
T Consensus       265 ~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  265 PSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             CCcceEEecCCCCcEEecccCCc
Confidence            99  9999999999999999985

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=3.7e-24  Score=168.71  Aligned_cols=229  Identities=16%  Similarity=0.204  Sum_probs=179.3

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC-ceEEeeC--CCeEEEEEcCCCceeeeEe
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG-NCMYGEK--CKFLHSWTVGDGFKLLTQL  146 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~--d~~i~iwd~~~~~~~~~~~  146 (308)
                      ++.|+++|.+ ++++.|.+++|||..+++..... ..++-.+..+.|-... .++.++.  |.+||..++.+. +.++-+
T Consensus        19 sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN-kylRYF   96 (311)
T KOG1446|consen   19 SLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN-KYLRYF   96 (311)
T ss_pred             EEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEecCCceEEEccCCCCCceEEEEeecC-ceEEEc
Confidence            7999999999 99999999999999888765321 2222235666665554 4455554  899999999999 899999


Q ss_pred             eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEEEcCCCEEEEEcC-CcEEEEEcCCCce--
Q 021744          147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCMISEGPWIFIGVT-NFVKAWNTQTNTD--  222 (308)
Q Consensus       147 ~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~d-~~i~~wd~~~~~~--  222 (308)
                      .||...|..++.+|-+..++|++.|++|++||++..++...+. ...++.++.|.|-++|++.. +.|++||++....  
T Consensus        97 ~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgP  176 (311)
T KOG1446|consen   97 PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGP  176 (311)
T ss_pred             CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCC
Confidence            9999999999999999999999999999999999988888887 45566677788999998874 4999999997522  


Q ss_pred             -eee--e-CCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCC----CeEEEEecCCCeEEEee-
Q 021744          223 -LSL--S-GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTD----SNRAHFSRDVTSLLGSV-  291 (308)
Q Consensus       223 -~~~--~-~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~v~~~~s~d~~~l~~s~-  291 (308)
                       .++  . +...+.+.|.|+|+  +++.++..+.+++.|.-.+    ..+.++..+..    ++.+.|+||+++++++. 
T Consensus       177 F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G----~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~  252 (311)
T KOG1446|consen  177 FTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG----TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD  252 (311)
T ss_pred             ceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC----cEeeeEeeccCCCCcceeEEECCCCcEEEEecC
Confidence             222  2 34668899999999  8888899999999999988    56666665443    33449999999999766 


Q ss_pred             ceEEEEee--cCceeE
Q 021744          292 SFIMFIGQ--NNKGVV  305 (308)
Q Consensus       292 s~~i~~~~--~~~~~~  305 (308)
                      +..|.+|.  +.+.+.
T Consensus       253 dg~i~vw~~~tg~~v~  268 (311)
T KOG1446|consen  253 DGTIHVWNLETGKKVA  268 (311)
T ss_pred             CCcEEEEEcCCCcEee
Confidence            45555554  444443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=1.8e-24  Score=194.47  Aligned_cols=282  Identities=15%  Similarity=0.089  Sum_probs=212.5

Q ss_pred             CCCCceeEEEeecCCCCCCCCCCceEEec--CCCeEEEeecCCCCCCCCCccccc--CCCCCCccccccc--eeEEecCC
Q 021744            5 AHGGNKRVFHRLGGGGGDGGGGGLSTADT--RQKVCNYWRAGKCNRFPCPYLHRE--LPLPPAATANGAA--AKRFANNT   78 (308)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~s--~d~~i~~W~~~~~~~~~~~~~~~~--~~~~~~~~gh~~~--~i~~s~~g   78 (308)
                      .|++ +++|+=-=++     .+..+|||+  .|+.+++|+...-.  ++.....+  .+.......|.+.  |+.|+|||
T Consensus        10 ~H~~-~~IfSIdv~p-----dg~~~aTgGq~~d~~~~iW~~~~vl--~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG   81 (942)
T KOG0973|consen   10 NHNE-KSIFSIDVHP-----DGVKFATGGQVLDGGIVIWSQDPVL--DEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG   81 (942)
T ss_pred             ccCC-eeEEEEEecC-----CceeEecCCccccccceeecccccc--chhhhhhcccchhheeeccccCceeEEEECCCC
Confidence            4555 6666654444     356899999  89999999866431  11111111  1222334467666  89999999


Q ss_pred             Ce-eeccCCCcEEEEECCC--CCCc---------------ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCC
Q 021744           79 WG-RNNNFNNHSNNYRAGN--SKNS---------------NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDG  139 (308)
Q Consensus        79 ~~-~s~~~d~~i~vwd~~~--~~~~---------------~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~  139 (308)
                      .+ |+|+.|+.|.||+...  ....               .....+|...+..+.|+|++.+ ++++.|+.|.||+..+.
T Consensus        82 ~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF  161 (942)
T KOG0973|consen   82 SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF  161 (942)
T ss_pred             CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc
Confidence            99 9999999999999973  0100               0123567777999999999977 99999999999999999


Q ss_pred             ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCC---Ce----eE--EEEcCCCEEEEEc--
Q 021744          140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG---GE----VG--CMISEGPWIFIGV--  208 (308)
Q Consensus       140 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~---~~----v~--~~~~~~~~l~~~~--  208 (308)
                       +.+..+++|...|-.+.|+|-|+++++-+.|++|++|++.+....+.+..+   .+    ..  +++|||++|++..  
T Consensus       162 -~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~  240 (942)
T KOG0973|consen  162 -ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV  240 (942)
T ss_pred             -eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence             899999999999999999999999999999999999998887777766521   11    12  2368999999743  


Q ss_pred             C---CcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC-------------------EEEEEcCCCeEEEEEcCCCCccccc
Q 021744          209 T---NFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-------------------LLFAGTQDGAILAWKFNVTTNCFEP  265 (308)
Q Consensus       209 d---~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~-------------------~l~~g~~dg~i~iwd~~~~~~~~~~  265 (308)
                      +   .++.|.+-.+.+.- .+.+|..++.++.|+|.                   .+|+|+.|+.|.||.....    ++
T Consensus       241 n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~----RP  316 (942)
T KOG0973|consen  241 NGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP----RP  316 (942)
T ss_pred             cCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC----Cc
Confidence            2   37888888776644 89999999999999872                   4788999999999999776    55


Q ss_pred             ceecc-ccCCCeEE-EEecCCCeEEEe-eceEEEEee
Q 021744          266 AASLK-VHTDSNRA-HFSRDVTSLLGS-VSFIMFIGQ  299 (308)
Q Consensus       266 ~~~~~-~~~~~v~~-~~s~d~~~l~~s-~s~~i~~~~  299 (308)
                      +..+. -....|.. +|+|||..|+++ .+..+....
T Consensus       317 l~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~  353 (942)
T KOG0973|consen  317 LFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIH  353 (942)
T ss_pred             hhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence            55443 35667888 999999887754 466666543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=2.1e-24  Score=168.95  Aligned_cols=226  Identities=15%  Similarity=0.135  Sum_probs=179.4

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEECCC-CCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEe
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYRAGN-SKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQL  146 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~  146 (308)
                      +++|||....  +.+|+|++||+|++.. ++........+.+.+.+++|+.+|.. .+|+.|+.+++||+.+++  ...+
T Consensus        32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q--~~~v  109 (347)
T KOG0647|consen   32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ--VSQV  109 (347)
T ss_pred             eeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC--eeee
Confidence            7999995544  7999999999999965 56665566778888999999999977 789999999999999983  5667


Q ss_pred             eCcccceEEEEEeCCCC--EEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee
Q 021744          147 EGHQKVVSGITLPSGSD--KLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL  223 (308)
Q Consensus       147 ~~h~~~v~~~~~~~~~~--~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~  223 (308)
                      ..|.++|..+.|-+...  .|+|||.|++|++||.+...++.++..++.+.++.....+++++. ++.|.+|+|+.+...
T Consensus       110 ~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te  189 (347)
T KOG0647|consen  110 AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTE  189 (347)
T ss_pred             eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcch
Confidence            78999999999987554  799999999999999999999999999999888876667777665 999999999876543


Q ss_pred             --ee-eCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccC---------CCeEE-EEecCCCeEE
Q 021744          224 --SL-SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT---------DSNRA-HFSRDVTSLL  288 (308)
Q Consensus       224 --~~-~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~~v~~-~~s~d~~~l~  288 (308)
                        .. ..-.-.++|++..++  ..+.|+-+|++.|..+..+.+  +.-.+++-|.         ..|+. +|.|....|+
T Consensus       190 ~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~--~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlv  267 (347)
T KOG0647|consen  190 FKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP--KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLV  267 (347)
T ss_pred             hhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc--cCceeEEEeccCCCCCCceEEecceEeecccceEE
Confidence              21 223447899998887  779999999999999988633  2233444443         24677 9999887888


Q ss_pred             Eee-ceEEEEeec
Q 021744          289 GSV-SFIMFIGQN  300 (308)
Q Consensus       289 ~s~-s~~i~~~~~  300 (308)
                      +.+ +..+-.|..
T Consensus       268 TaGsDGtf~FWDk  280 (347)
T KOG0647|consen  268 TAGSDGTFSFWDK  280 (347)
T ss_pred             EecCCceEEEecc
Confidence            655 555544443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.2e-23  Score=165.92  Aligned_cols=258  Identities=11%  Similarity=0.119  Sum_probs=194.7

Q ss_pred             CCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-eecc--CCCcEEEEECCCCC
Q 021744           23 GGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-RNNN--FNNHSNNYRAGNSK   98 (308)
Q Consensus        23 ~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~s~~--~d~~i~vwd~~~~~   98 (308)
                      ++.|..+++++.|.+++++|..++           ........-+-+. .++|...... .-++  .|.+||.-++.+.+
T Consensus        23 s~~G~~litss~dDsl~LYd~~~g-----------~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk   91 (311)
T KOG1446|consen   23 SDDGLLLITSSEDDSLRLYDSLSG-----------KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK   91 (311)
T ss_pred             cCCCCEEEEecCCCeEEEEEcCCC-----------ceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCc
Confidence            456788999999999999999887           2222222222233 5677655555 4444  58999999998887


Q ss_pred             CcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEE
Q 021744           99 NSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW  177 (308)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~w  177 (308)
                      .+. -..+|.+.|..+..+|-+.. ++++.|++|++||++.. +....+..  ..-..++|+|+|-.+|++.....|++|
T Consensus        92 ylR-YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~-~cqg~l~~--~~~pi~AfDp~GLifA~~~~~~~IkLy  167 (311)
T KOG1446|consen   92 YLR-YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK-KCQGLLNL--SGRPIAAFDPEGLIFALANGSELIKLY  167 (311)
T ss_pred             eEE-EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC-CCceEEec--CCCcceeECCCCcEEEEecCCCeEEEE
Confidence            663 45778899999999998866 99999999999999976 55554443  233467899999999999888899999


Q ss_pred             eCCC--CeEEEEEeC----CCeeEE--EEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCC---EEEEEEeCC--EE
Q 021744          178 DCAS--GQCAGVINL----GGEVGC--MISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQ---VYAMAVGND--LL  242 (308)
Q Consensus       178 d~~~--~~~~~~~~~----~~~v~~--~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~---v~~~~~~~~--~l  242 (308)
                      |++.  ..+..++..    ..+...  ++++|++++.+. .+.+++.|.-+|..+ ++..+...   ..+.+|+||  ++
T Consensus       168 D~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fv  247 (311)
T KOG1446|consen  168 DLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFV  247 (311)
T ss_pred             EecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEE
Confidence            9996  345555552    233343  368999998776 778999999999877 56555432   267889999  89


Q ss_pred             EEEcCCCeEEEEEcCCCCcccccceeccc-cCCCeEE-EEecCCCeEEEeec-eEEEEee
Q 021744          243 FAGTQDGAILAWKFNVTTNCFEPAASLKV-HTDSNRA-HFSRDVTSLLGSVS-FIMFIGQ  299 (308)
Q Consensus       243 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~-~~s~d~~~l~~s~s-~~i~~~~  299 (308)
                      ++|+.||+|.+|+++++    ..+..+.+ +..++.+ .|+|.-..++++++ ...|+..
T Consensus       248 l~gs~dg~i~vw~~~tg----~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~  303 (311)
T KOG1446|consen  248 LSGSDDGTIHVWNLETG----KKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPD  303 (311)
T ss_pred             EEecCCCcEEEEEcCCC----cEeeEecCCCCCCccccccCCceeeeeecCceEEEEecc
Confidence            99999999999999998    67777776 6889999 99998877776664 4444443

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=2.3e-23  Score=183.62  Aligned_cols=231  Identities=14%  Similarity=0.136  Sum_probs=169.1

Q ss_pred             eEEecCCCe-eeccCCCcEEEEECCCC----------CCcc--cccceeeeeeeeeeeec-CCc-eEEeeCCCeEEEEEc
Q 021744           72 KRFANNTWG-RNNNFNNHSNNYRAGNS----------KNSN--INNRAVIKTDILCRNWV-QGN-CMYGEKCKFLHSWTV  136 (308)
Q Consensus        72 i~~s~~g~~-~s~~~d~~i~vwd~~~~----------~~~~--~~~~~~~~~~~~~~~~~-~~~-~~~g~~d~~i~iwd~  136 (308)
                      ...++++.. ++++.+.....|+...+          +...  ....+|...+..+.|+| ++. +++++.|+.|++||+
T Consensus        26 ~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi  105 (493)
T PTZ00421         26 STALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGI  105 (493)
T ss_pred             ccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEec
Confidence            345566555 77777776677765322          1111  12456777899999999 554 499999999999999


Q ss_pred             CCCc------eeeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEE
Q 021744          137 GDGF------KLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFI  206 (308)
Q Consensus       137 ~~~~------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~  206 (308)
                      .+..      +.+..+.+|...|.+++|+|++ .+|++++.|++|++||+++++.+..+. |...+.++  .+++.+|++
T Consensus       106 ~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLat  185 (493)
T PTZ00421        106 PEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCT  185 (493)
T ss_pred             CCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEE
Confidence            7641      3467889999999999999975 689999999999999999999888887 67777766  478999998


Q ss_pred             Ec-CCcEEEEEcCCCcee-eeeCCCCC-EEEEEEeCC--EEEEE----cCCCeEEEEEcCCCCcccccceecccc-CCCe
Q 021744          207 GV-TNFVKAWNTQTNTDL-SLSGPVGQ-VYAMAVGND--LLFAG----TQDGAILAWKFNVTTNCFEPAASLKVH-TDSN  276 (308)
Q Consensus       207 ~~-d~~i~~wd~~~~~~~-~~~~~~~~-v~~~~~~~~--~l~~g----~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~v  276 (308)
                      ++ |+.|++||+++++.. .+.+|... +..+.|.++  .++++    +.|+.|++||+++..   .++.....+ ...+
T Consensus       186 gs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~---~p~~~~~~d~~~~~  262 (493)
T PTZ00421        186 TSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA---SPYSTVDLDQSSAL  262 (493)
T ss_pred             ecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC---CceeEeccCCCCce
Confidence            77 999999999998877 67788764 446677776  55543    358999999998753   344433333 3445


Q ss_pred             EE-EEecCCCeEEEee--c--eEEEEeecCceeE
Q 021744          277 RA-HFSRDVTSLLGSV--S--FIMFIGQNNKGVV  305 (308)
Q Consensus       277 ~~-~~s~d~~~l~~s~--s--~~i~~~~~~~~~~  305 (308)
                      .. .|++++.+|++++  +  +.+|-..+.+-+.
T Consensus       263 ~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~  296 (493)
T PTZ00421        263 FIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTF  296 (493)
T ss_pred             EEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence            55 8999999887544  4  4445555544433

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=3.2e-24  Score=164.77  Aligned_cols=229  Identities=12%  Similarity=0.109  Sum_probs=186.1

Q ss_pred             Cccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc-ccceeeeeeeeeeeecCC--ceEEeeCCCeEEEEEc
Q 021744           63 AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI-NNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTV  136 (308)
Q Consensus        63 ~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~  136 (308)
                      ..++|...  .++|+.+|.. ++|+.|+++++|+++..+.... ...+|...+..++++|..  .+++++.|.+|++||+
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~   94 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI   94 (313)
T ss_pred             HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence            34566655  7999999999 9999999999999987644332 346677777667777655  4589999999999999


Q ss_pred             CCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEE-EEcCCcEE
Q 021744          137 GDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIF-IGVTNFVK  213 (308)
Q Consensus       137 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~-~~~d~~i~  213 (308)
                      +.+ ++...... +..-.-+.|+|++++++.++.|..|.+.|.++.+.+...+....+.-+  ..++.+++ +.+.|+|.
T Consensus        95 r~~-k~~~~i~~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~  172 (313)
T KOG1407|consen   95 RSG-KCTARIET-KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE  172 (313)
T ss_pred             ccC-cEEEEeec-cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence            999 67766663 344456789999999999999999999999999988888766555443  23455555 55589999


Q ss_pred             EEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE
Q 021744          214 AWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG  289 (308)
Q Consensus       214 ~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~  289 (308)
                      +......+++ .+++|+....||.|+|+  +||+|+.|-.+.+||+..-    -+++.+..+.-+|+. .||.||++|++
T Consensus       173 ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL----iC~R~isRldwpVRTlSFS~dg~~lAS  248 (313)
T KOG1407|consen  173 ILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL----ICERCISRLDWPVRTLSFSHDGRMLAS  248 (313)
T ss_pred             EEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh----hhheeeccccCceEEEEeccCcceeec
Confidence            9988887777 89999999999999999  9999999999999999974    788899999999999 99999999995


Q ss_pred             ee-ceEEEE
Q 021744          290 SV-SFIMFI  297 (308)
Q Consensus       290 s~-s~~i~~  297 (308)
                      ++ +..|=|
T Consensus       249 aSEDh~IDI  257 (313)
T KOG1407|consen  249 ASEDHFIDI  257 (313)
T ss_pred             cCccceEEe
Confidence            55 444433

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.4e-25  Score=180.01  Aligned_cols=235  Identities=11%  Similarity=0.061  Sum_probs=181.7

Q ss_pred             eeEEEeecCCCCCCC-----CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-e
Q 021744           10 KRVFHRLGGGGGDGG-----GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-R   81 (308)
Q Consensus        10 ~~~~~~~~~~~~~~~-----~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~   81 (308)
                      |-.+...|+..+++-     ..+++++++.|..+++||+.++.           .......+|...  +.+|.|||.. +
T Consensus       260 kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd-----------~~~~y~~~~~~S~~sc~W~pDg~~~V  328 (519)
T KOG0293|consen  260 KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD-----------LRHLYPSGLGFSVSSCAWCPDGFRFV  328 (519)
T ss_pred             eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcch-----------hhhhcccCcCCCcceeEEccCCceeE
Confidence            445555666655432     25799999999999999999981           111112233333  8999999999 9


Q ss_pred             eccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC
Q 021744           82 NNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS  160 (308)
Q Consensus        82 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~  160 (308)
                      +|+.|+++..||++.. .+..........+..++..++|.. +..+.|..|++++.++. .... +.....+|++++++.
T Consensus       329 ~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~-~dr~-lise~~~its~~iS~  405 (519)
T KOG0293|consen  329 TGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR-VDRG-LISEEQPITSFSISK  405 (519)
T ss_pred             ecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhh-hhhc-cccccCceeEEEEcC
Confidence            9999999999999643 222223333344888999999977 77789999999998876 2232 333467999999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CC---CeeEEEE--cCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCE
Q 021744          161 GSDKLYSGSKDETVRVWDCASGQCAGVIN-LG---GEVGCMI--SEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQV  232 (308)
Q Consensus       161 ~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~---~~v~~~~--~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v  232 (308)
                      ++++++.--.+..+.+||++..+.++.+. |.   ..+.+.+  .+..++++|+ |+.|++|+..+++++ .+.+|...|
T Consensus       406 d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~v  485 (519)
T KOG0293|consen  406 DGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTV  485 (519)
T ss_pred             CCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCccee
Confidence            99999999999999999999877777766 22   2233333  4567888998 999999999999998 899999999


Q ss_pred             EEEEEeCC---EEEEEcCCCeEEEEEcCC
Q 021744          233 YAMAVGND---LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       233 ~~~~~~~~---~l~~g~~dg~i~iwd~~~  258 (308)
                      ++++|+|.   .+|++++||+|+||-...
T Consensus       486 NcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  486 NCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             eEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            99999998   899999999999998764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.6e-23  Score=164.99  Aligned_cols=262  Identities=13%  Similarity=0.145  Sum_probs=201.1

Q ss_pred             eEEecCCCeEEEeecCCCCCCCCCcccccCCC---CCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744           29 STADTRQKVCNYWRAGKCNRFPCPYLHRELPL---PPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN  104 (308)
Q Consensus        29 ~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~---~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~  104 (308)
                      |+.|+....|.=+++...++ .|.  ....|.   .-.+..|.++--++.-++.+ |+|+.|-+|+|||+.....+. .+
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~-~~~--~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg-~l   79 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPK-GCT--DSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLG-IL   79 (362)
T ss_pred             EEEeeeeeEEEEEEeccCcc-ccc--cccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhc-ce
Confidence            67777777777666543310 000  000111   12345676663455667889 999999999999997765543 45


Q ss_pred             ceeeeeeeeeeeecCC---ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744          105 RAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       105 ~~~~~~~~~~~~~~~~---~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~  181 (308)
                      ..|.+.+.++.|.+.-   ..++|++||.|.+|+...- +.+..+++|++.|+.++++|.+++.++.+.|+.+++||+-+
T Consensus        80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~  158 (362)
T KOG0294|consen   80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR  158 (362)
T ss_pred             eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence            5677789999998877   4599999999999999988 89999999999999999999999999999999999999999


Q ss_pred             CeEEEEEe--CCCeeEEEEcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCC
Q 021744          182 GQCAGVIN--LGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       182 ~~~~~~~~--~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~  258 (308)
                      |+.-...+  +......+.+.|.+++++..+.|-+|.+.+.........+..+.++.|... .|++|.+|+.|.+||...
T Consensus       159 Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds  238 (362)
T KOG0294|consen  159 GRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDS  238 (362)
T ss_pred             CccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCC
Confidence            87766655  444555556889999999989999999988776633333456788888766 999999999999999998


Q ss_pred             CCcccccceeccccCCCeEE-E-E-ecCCCeEEE-eeceEEEEee
Q 021744          259 TTNCFEPAASLKVHTDSNRA-H-F-SRDVTSLLG-SVSFIMFIGQ  299 (308)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~-~-~-s~d~~~l~~-s~s~~i~~~~  299 (308)
                      .    .+...+.+|...|.. . | .|++.+|++ |+++.|.+|.
T Consensus       239 ~----~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd  279 (362)
T KOG0294|consen  239 D----TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD  279 (362)
T ss_pred             C----ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence            5    788999999999988 4 3 356778874 4455555554

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=5.3e-25  Score=183.08  Aligned_cols=252  Identities=13%  Similarity=0.172  Sum_probs=196.3

Q ss_pred             CCceEEecCCCeEEEeecCC-CCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           26 GGLSTADTRQKVCNYWRAGK-CNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~-~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      ...+.||+ .+.|+|||+.. ++|.|..-|.-        ....+.  .+...|||+. ++|++-.++.|||+....+-.
T Consensus       431 trhVyTgG-kgcVKVWdis~pg~k~PvsqLdc--------l~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpri  501 (705)
T KOG0639|consen  431 TRHVYTGG-KGCVKVWDISQPGNKSPVSQLDC--------LNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRI  501 (705)
T ss_pred             cceeEecC-CCeEEEeeccCCCCCCccccccc--------cCcccceeeeEecCCCceEEeccccceeeeeeccCCCcch
Confidence            34455544 57899999764 33433211110        001111  5778999999 999999999999997553321


Q ss_pred             ccccee-eeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744          102 INNRAV-IKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC  179 (308)
Q Consensus       102 ~~~~~~-~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~  179 (308)
                      ...... .-....++.+|+... .++..||.|.|||+.+. ..++.|+||++.+.|+.++++|..|.||+-|.+|+.||+
T Consensus       502 kaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDl  580 (705)
T KOG0639|consen  502 KAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDL  580 (705)
T ss_pred             hhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-eeeecccCCCCCceeEEecCCCceeecCCCccceeehhh
Confidence            111111 122456678888865 78889999999999998 899999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEE
Q 021744          180 ASGQCAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAW  254 (308)
Q Consensus       180 ~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iw  254 (308)
                      ++++.+........|.++  +|.+.++++|. ++.+.+......+...+..|++.|.++.|.+-  ++++.+.|+.+..|
T Consensus       581 regrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnaw  660 (705)
T KOG0639|consen  581 REGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW  660 (705)
T ss_pred             hhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhc
Confidence            999998888888888877  68999999998 77888888877777788889999999999987  99999999999999


Q ss_pred             EcCCCCcccccceeccccCCCeEEEEecCCCeEEEee
Q 021744          255 KFNVTTNCFEPAASLKVHTDSNRAHFSRDVTSLLGSV  291 (308)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~~~v~~~~s~d~~~l~~s~  291 (308)
                      ....+    ..+...+......+|..|.|.++++++.
T Consensus       661 rtPyG----asiFqskE~SsVlsCDIS~ddkyIVTGS  693 (705)
T KOG0639|consen  661 RTPYG----ASIFQSKESSSVLSCDISFDDKYIVTGS  693 (705)
T ss_pred             cCccc----cceeeccccCcceeeeeccCceEEEecC
Confidence            99887    5556565555455559999999999543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.93  E-value=3.1e-24  Score=171.88  Aligned_cols=231  Identities=15%  Similarity=0.167  Sum_probs=183.2

Q ss_pred             CCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEc
Q 021744           61 PPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTV  136 (308)
Q Consensus        61 ~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~  136 (308)
                      ...+..|...  +++.+|+.+. +||+.|..-.||++.+++.+ ....+|+..|.++.|+.+|.+ ++|+-+|.|+||.+
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~-~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA-GELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce-eEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            3456788888  8999998888 99999999999999988743 466789999999999999987 99999999999999


Q ss_pred             CCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEE--EEcCCCEEEEEc-CCcE
Q 021744          137 GDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGC--MISEGPWIFIGV-TNFV  212 (308)
Q Consensus       137 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~--~~~~~~~l~~~~-d~~i  212 (308)
                      .++ .....+...-..+.=+.|+|.+..|+.|+.||.+.+|.+.++...+.+. |..++++  +.|+|+.++++. |++|
T Consensus       136 stg-~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti  214 (399)
T KOG0296|consen  136 STG-GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTI  214 (399)
T ss_pred             ccC-ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceE
Confidence            999 5666666566788889999999999999999999999999977777777 6666654  579999999988 9999


Q ss_pred             EEEEcCCCcee-eee---------------------------------------------------CCCCCEEEEEEeC-
Q 021744          213 KAWNTQTNTDL-SLS---------------------------------------------------GPVGQVYAMAVGN-  239 (308)
Q Consensus       213 ~~wd~~~~~~~-~~~---------------------------------------------------~~~~~v~~~~~~~-  239 (308)
                      ++||+++++++ .+.                                                   .+...+.|+.+.| 
T Consensus       215 ~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~  294 (399)
T KOG0296|consen  215 IVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS  294 (399)
T ss_pred             EEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccc
Confidence            99999988644 222                                                   0111223333333 


Q ss_pred             --C--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          240 --D--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       240 --~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                        .  ++|+|+-||+|.|||+...     .++..-.|...|.. .|-+ ..+|++++ ...++.+.
T Consensus       295 ss~lpL~A~G~vdG~i~iyD~a~~-----~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD  354 (399)
T KOG0296|consen  295 SSKLPLAACGSVDGTIAIYDLAAS-----TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD  354 (399)
T ss_pred             ccccchhhcccccceEEEEecccc-----hhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence              3  7899999999999999984     44555567888887 9998 55666555 55555554

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.7e-24  Score=183.91  Aligned_cols=220  Identities=14%  Similarity=0.188  Sum_probs=186.9

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccc-cccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATA-NGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~g-h~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~  100 (308)
                      .|..||.|..+++|.+||..+.            .......+ |..-  +++|.  +.. .+|+.|+.|..+|+...+..
T Consensus       228 ~G~~LavG~~~g~v~iwD~~~~------------k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~  293 (484)
T KOG0305|consen  228 DGSHLAVGTSDGTVQIWDVKEQ------------KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV  293 (484)
T ss_pred             CCCEEEEeecCCeEEEEehhhc------------cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence            3678999999999999998876            22333444 5555  77887  555 99999999999999877766


Q ss_pred             ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC-CCCEEEEee--CCCcEEE
Q 021744          101 NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGS--KDETVRV  176 (308)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s--~dg~v~~  176 (308)
                      ......|...|..+.+++++.. ++|+.|+.+.|||.... +++..+..|+..|.+++|+| ....||+|+  .|+.|++
T Consensus       294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f  372 (484)
T KOG0305|consen  294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF  372 (484)
T ss_pred             hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc-cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence            5557788889999999999976 99999999999999777 78889999999999999999 557788774  6999999


Q ss_pred             EeCCCCeEEEEEeCCCeeEEE-E-cCCCEEEE--Ec-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCC
Q 021744          177 WDCASGQCAGVINLGGEVGCM-I-SEGPWIFI--GV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQD  248 (308)
Q Consensus       177 wd~~~~~~~~~~~~~~~v~~~-~-~~~~~l~~--~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~d  248 (308)
                      ||..+++.+..+.....|+.+ + +..+.|++  |. ++.|.||+..+.+.+ .+.+|...|..++++||  .+++|+.|
T Consensus       373 wn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D  452 (484)
T KOG0305|consen  373 WNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAAD  452 (484)
T ss_pred             EEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEeccc
Confidence            999999999999999999887 3 45555554  33 779999999998777 89999999999999999  99999999


Q ss_pred             CeEEEEEcCCC
Q 021744          249 GAILAWKFNVT  259 (308)
Q Consensus       249 g~i~iwd~~~~  259 (308)
                      .++++|++-..
T Consensus       453 ETlrfw~~f~~  463 (484)
T KOG0305|consen  453 ETLRFWNLFDE  463 (484)
T ss_pred             CcEEeccccCC
Confidence            99999998774

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=2.8e-23  Score=184.19  Aligned_cols=216  Identities=13%  Similarity=0.077  Sum_probs=161.0

Q ss_pred             eccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecC-Cce-EEeeCCCeEEEEEcCCCc-------eeeeEeeCcccc
Q 021744           82 NNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQ-GNC-MYGEKCKFLHSWTVGDGF-------KLLTQLEGHQKV  152 (308)
Q Consensus        82 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~g~~d~~i~iwd~~~~~-------~~~~~~~~h~~~  152 (308)
                      .|+.++.|++|+...... .....+|...+..+.|+|. +.. ++|+.|+.|++||+.++.       ..+..+.+|...
T Consensus        49 gGG~~gvI~L~~~~r~~~-v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~  127 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPP-VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK  127 (568)
T ss_pred             CCCceeEEEeeecCCCce-EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence            466788999999865432 3345678888999999996 444 899999999999997541       134567899999


Q ss_pred             eEEEEEeCCCCE-EEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeC
Q 021744          153 VSGITLPSGSDK-LYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSG  227 (308)
Q Consensus       153 v~~~~~~~~~~~-l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~  227 (308)
                      |.+++|+|++.. |++++.|++|++||+++++.+..+.+...+.++  .+++.+|++++ |+.|++||+++++.. .+.+
T Consensus       128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g  207 (568)
T PTZ00420        128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI  207 (568)
T ss_pred             EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            999999998876 579999999999999999888888777777766  47899998776 999999999999877 7888


Q ss_pred             CCCCEEEEE-----EeCC--EEEEEcCCC----eEEEEEcCCCCcccccceecc--ccCCCeEEEEe-cCCCeEEE-eec
Q 021744          228 PVGQVYAMA-----VGND--LLFAGTQDG----AILAWKFNVTTNCFEPAASLK--VHTDSNRAHFS-RDVTSLLG-SVS  292 (308)
Q Consensus       228 ~~~~v~~~~-----~~~~--~l~~g~~dg----~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~s-~d~~~l~~-s~s  292 (308)
                      |.+.+.+..     |+++  ++++++.|+    .|+|||++...   +++..+.  .+...+...|. +++.++++ +++
T Consensus       208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~---~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD  284 (568)
T PTZ00420        208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT---SALVTMSIDNASAPLIPHYDESTGLIYLIGKGD  284 (568)
T ss_pred             ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC---CceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence            887654333     3466  778777664    79999999642   4454443  33344444444 45766654 456


Q ss_pred             eEEEEeecC
Q 021744          293 FIMFIGQNN  301 (308)
Q Consensus       293 ~~i~~~~~~  301 (308)
                      ..|+++.-.
T Consensus       285 ~tIr~~e~~  293 (568)
T PTZ00420        285 GNCRYYQHS  293 (568)
T ss_pred             CeEEEEEcc
Confidence            666666543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=3.1e-24  Score=178.94  Aligned_cols=266  Identities=11%  Similarity=0.123  Sum_probs=192.3

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCcc--
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN--  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~--  101 (308)
                      +|..++|||.|.+|++||.+..+... +.    .....|..+|....++|++.|.. +..+..-..+|+|.+..+...  
T Consensus       178 ~GaR~~sGs~Dy~v~~wDf~gMdas~-~~----fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~  252 (641)
T KOG0772|consen  178 SGARFVSGSLDYTVKFWDFQGMDASM-RS----FRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFS  252 (641)
T ss_pred             CCceeeeccccceEEEEecccccccc-hh----hhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeee
Confidence            36789999999999999987642110 11    22234556777778999999998 777777789999986433211  


Q ss_pred             ---------cccceeeeeeeeeeeecCC--ceEEeeCCCeEEEEEcCCCceeeeEee-----CcccceEEEEEeCCCCEE
Q 021744          102 ---------INNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLE-----GHQKVVSGITLPSGSDKL  165 (308)
Q Consensus       102 ---------~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l  165 (308)
                               ...++|...+.+.+|.|..  .+++++.||++||||+...++.++.++     +-.-+++.++|+++++.+
T Consensus       253 KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~i  332 (641)
T KOG0772|consen  253 KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLI  332 (641)
T ss_pred             ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchh
Confidence                     1346788889999999987  449999999999999987655555554     234578999999999999


Q ss_pred             EEeeCCCcEEEEeCCCC--eEEEEEe--CCC--eeEEE--EcCCCEEEE-EcCCcEEEEEcCCCcee--eeeC--CCCCE
Q 021744          166 YSGSKDETVRVWDCASG--QCAGVIN--LGG--EVGCM--ISEGPWIFI-GVTNFVKAWNTQTNTDL--SLSG--PVGQV  232 (308)
Q Consensus       166 ~s~s~dg~v~~wd~~~~--~~~~~~~--~~~--~v~~~--~~~~~~l~~-~~d~~i~~wd~~~~~~~--~~~~--~~~~v  232 (308)
                      |+|..||+|.+|+....  .+...+.  |..  .++|+  +++|++|++ |.|+++++||++..+..  ...+  ...+-
T Consensus       333 Aagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~  412 (641)
T KOG0772|consen  333 AAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPG  412 (641)
T ss_pred             hhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCC
Confidence            99999999999997642  2222232  433  67776  578999997 55999999999986533  2222  23356


Q ss_pred             EEEEEeCC--EEEEEcC------CCeEEEEEcCCCCcccccceeccccCCCeEE-EEecC-CCeEEEeeceEEEEee
Q 021744          233 YAMAVGND--LLFAGTQ------DGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRD-VTSLLGSVSFIMFIGQ  299 (308)
Q Consensus       233 ~~~~~~~~--~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d-~~~l~~s~s~~i~~~~  299 (308)
                      +.++|||+  ++++|+.      .|.+.+||..+-    +.+..+.-....|.. .|+|- ++.++++++..+++..
T Consensus       413 tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~----d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  413 TDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL----DTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             CccccCCCceEEEecccccCCCCCceEEEEeccce----eeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence            78999999  7777764      467999998885    667776655555544 99996 4566677765555543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=9.4e-24  Score=172.65  Aligned_cols=223  Identities=17%  Similarity=0.228  Sum_probs=186.3

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG  148 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~  148 (308)
                      ++...|..+. ++|+.|+++-++|....+.+ ....+|...+..+.++++... ++++.|..|+||.+... ........
T Consensus       224 ald~~~s~~~ilTGG~d~~av~~d~~s~q~l-~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-s~~~~~~~  301 (506)
T KOG0289|consen  224 ALDIIPSSSKILTGGEDKTAVLFDKPSNQIL-ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-SEPTSSRP  301 (506)
T ss_pred             EEeecCCCCcceecCCCCceEEEecchhhhh-hhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-cCcccccc
Confidence            4555666456 99999999999999776654 356788888999999998855 88999999999999877 45666778


Q ss_pred             cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCC-C--eeEE--EEcCCCEEEEEc-CCcEEEEEcCCCce
Q 021744          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-G--EVGC--MISEGPWIFIGV-TNFVKAWNTQTNTD  222 (308)
Q Consensus       149 h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~-~--~v~~--~~~~~~~l~~~~-d~~i~~wd~~~~~~  222 (308)
                      |..+|+.+..+|.+.||++++.|++..+.|++++.++....++ .  .+.+  +.|||-++.+|. |+.+++||+..+..
T Consensus       302 h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~  381 (506)
T KOG0289|consen  302 HEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN  381 (506)
T ss_pred             ccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccc
Confidence            9999999999999999999999999999999999998887754 2  2333  358888888888 99999999999887


Q ss_pred             e-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecccc-CCCeEE-EEecCCCeEEEee-ceEEE
Q 021744          223 L-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH-TDSNRA-HFSRDVTSLLGSV-SFIMF  296 (308)
Q Consensus       223 ~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~-~~s~d~~~l~~s~-s~~i~  296 (308)
                      . .+.+|.++|.+++|+.+  +|+++++|+.|++||++.-    +..+++... ...+.. .|.+.|++|+.++ ++.+|
T Consensus       382 ~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl----~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy  457 (506)
T KOG0289|consen  382 VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL----KNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVY  457 (506)
T ss_pred             cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh----cccceeeccccccceeEEEcCCCCeEEeecceeEEE
Confidence            6 89999999999999999  9999999999999999986    445555432 236777 9999999998665 78888


Q ss_pred             Eee
Q 021744          297 IGQ  299 (308)
Q Consensus       297 ~~~  299 (308)
                      +..
T Consensus       458 ~~~  460 (506)
T KOG0289|consen  458 ICK  460 (506)
T ss_pred             EEe
Confidence            765

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=3.4e-24  Score=185.08  Aligned_cols=271  Identities=12%  Similarity=0.133  Sum_probs=204.3

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCC---CCccccc------------------CC-----CCCCccccccc-eeEEecCC
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFP---CPYLHRE------------------LP-----LPPAATANGAA-AKRFANNT   78 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~---~~~~~~~------------------~~-----~~~~~~gh~~~-~i~~s~~g   78 (308)
                      ..-++|+|.|++||+|+...|-...   ...+..+                  .+     ....+.+..+- +++++|+|
T Consensus       392 ~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g  471 (1080)
T KOG1408|consen  392 RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG  471 (1080)
T ss_pred             ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc
Confidence            4459999999999999987652110   0111000                  00     00111122233 89999999


Q ss_pred             Ce-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC----ceEEeeCCCeEEEEEcCCCceeeeEeeCcccce
Q 021744           79 WG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG----NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVV  153 (308)
Q Consensus        79 ~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v  153 (308)
                      ++ |+|..-|++|||++...+.. .....|+..+.++.|+...    .+++++.|..|+|||+.....+++++.+|...|
T Consensus       472 qhLAsGDr~GnlrVy~Lq~l~~~-~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI  550 (1080)
T KOG1408|consen  472 QHLASGDRGGNLRVYDLQELEYT-CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI  550 (1080)
T ss_pred             ceecccCccCceEEEEehhhhhh-hheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence            99 99999999999999655433 2456788889999998655    238899999999999998777899999999999


Q ss_pred             EEEEEeCCC--CEEEEeeCCCcEEEEeCCCCeEEEEEe------CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCce
Q 021744          154 SGITLPSGS--DKLYSGSKDETVRVWDCASGQCAGVIN------LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTD  222 (308)
Q Consensus       154 ~~~~~~~~~--~~l~s~s~dg~v~~wd~~~~~~~~~~~------~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~  222 (308)
                      +++.|-..+  ..+++++.|+.|.+--.+.......+.      ....+..+  -|.-++++++. |..|++||+.+++.
T Consensus       551 TsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq  630 (1080)
T KOG1408|consen  551 TSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ  630 (1080)
T ss_pred             eEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence            999998776  678999999988765443221122222      11223333  36677777655 99999999999987


Q ss_pred             e-eee---CCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE-EeeceE
Q 021744          223 L-SLS---GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL-GSVSFI  294 (308)
Q Consensus       223 ~-~~~---~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~-~s~s~~  294 (308)
                      . .++   .|++....+...|.  |+++.+.|.++.++|+.++    +++..+.+|...|+. .|.+|-+.|+ ++++.-
T Consensus       631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg----EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC  706 (1080)
T KOG1408|consen  631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG----ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC  706 (1080)
T ss_pred             eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc----hhhhhhcCcchheeeeeecccchhheeecCCce
Confidence            7 555   46677888888998  9999999999999999998    999999999999999 9999999988 677888


Q ss_pred             EEEeecC
Q 021744          295 MFIGQNN  301 (308)
Q Consensus       295 i~~~~~~  301 (308)
                      ||+|+-.
T Consensus       707 IFvW~lp  713 (1080)
T KOG1408|consen  707 IFVWKLP  713 (1080)
T ss_pred             EEEEECc
Confidence            8888743

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=2.5e-24  Score=176.90  Aligned_cols=231  Identities=11%  Similarity=0.040  Sum_probs=175.9

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCCC--
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSKN--   99 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~--   99 (308)
                      ...||+.+..+.+.|||..+..-.+...  .+......+.||+..  .++|++...-  ++++.|++|++||+.....  
T Consensus       137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~--~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~  214 (422)
T KOG0264|consen  137 PNIVATKTSSGDVYVFDYTKHPSKPKAS--GECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED  214 (422)
T ss_pred             CcEEEecCCCCCEEEEEeccCCCccccc--ccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC
Confidence            4578888999999999987651111100  011222356789885  8999987665  9999999999999964332  


Q ss_pred             ----cccccceeeeeeeeeeeecCC--ceEEeeCCCeEEEEEcCC-CceeeeEeeCcccceEEEEEeCC-CCEEEEeeCC
Q 021744          100 ----SNINNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGD-GFKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKD  171 (308)
Q Consensus       100 ----~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~~-~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d  171 (308)
                          ......+|...+..++|.+..  .+.+.+.|+.+.|||+++ ..+..+..++|.+.|.|++|+|- +..|||||.|
T Consensus       215 ~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D  294 (422)
T KOG0264|consen  215 KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSAD  294 (422)
T ss_pred             ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCC
Confidence                122345677778999998876  347889999999999994 22677788899999999999985 5668999999


Q ss_pred             CcEEEEeCCC-CeEEEEEe-CCCeeEEE-E-cC-CCEEEEEc-CCcEEEEEcCCC--------------cee-eeeCCCC
Q 021744          172 ETVRVWDCAS-GQCAGVIN-LGGEVGCM-I-SE-GPWIFIGV-TNFVKAWNTQTN--------------TDL-SLSGPVG  230 (308)
Q Consensus       172 g~v~~wd~~~-~~~~~~~~-~~~~v~~~-~-~~-~~~l~~~~-d~~i~~wd~~~~--------------~~~-~~~~~~~  230 (308)
                      ++|++||+++ .+++.++. |+..+..+ + |. ...|++++ |+.+.+||+..-              +++ ...+|..
T Consensus       295 ~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~  374 (422)
T KOG0264|consen  295 KTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA  374 (422)
T ss_pred             CcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc
Confidence            9999999997 45666666 78888887 3 44 44566544 999999998642              112 4568999


Q ss_pred             CEEEEEEeCC---EEEEEcCCCeEEEEEcCC
Q 021744          231 QVYAMAVGND---LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       231 ~v~~~~~~~~---~l~~g~~dg~i~iwd~~~  258 (308)
                      .|..+.|+|.   .+++.++|+.+.||....
T Consensus       375 kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  375 KVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            9999999998   899999999999999773

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=2.4e-24  Score=179.66  Aligned_cols=223  Identities=13%  Similarity=0.146  Sum_probs=165.2

Q ss_pred             cccccc--eeEEecCCCe-eeccCCCcEEEEECCCCC----CcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEc
Q 021744           65 TANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSK----NSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTV  136 (308)
Q Consensus        65 ~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~  136 (308)
                      .+|+..  ++++.|.|.. ++|+.|.+|++||+..-.    ...+........+..+.|++.+.. +..+.....+|+|-
T Consensus       164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR  243 (641)
T KOG0772|consen  164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR  243 (641)
T ss_pred             cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc
Confidence            356555  8999999999 999999999999995322    222222333445889999999855 55666678888886


Q ss_pred             CCCceeee------------EeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCC-eEEEEEeCC----Ce---eE
Q 021744          137 GDGFKLLT------------QLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASG-QCAGVINLG----GE---VG  195 (308)
Q Consensus       137 ~~~~~~~~------------~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~-~~~~~~~~~----~~---v~  195 (308)
                      ... +...            .-+||...+++.+|+|+. +.++|++.||++++||++.. +.++.+++.    ..   ..
T Consensus       244 dG~-~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ts  322 (641)
T KOG0772|consen  244 DGF-EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTS  322 (641)
T ss_pred             CCc-eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCcee
Confidence            543 2222            236899999999999975 66899999999999999864 455566521    11   22


Q ss_pred             EE-EcCCCEEEEEc-CCcEEEEEcCCCcee----eeeCCCC--CEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCccccc
Q 021744          196 CM-ISEGPWIFIGV-TNFVKAWNTQTNTDL----SLSGPVG--QVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEP  265 (308)
Q Consensus       196 ~~-~~~~~~l~~~~-d~~i~~wd~~~~~~~----~~~~~~~--~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~  265 (308)
                      |. .++++++++|. ||.|.+|+.......    .-.+|..  .|+||.||++  +|++-+.|+++++||++..+   ++
T Consensus       323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k---kp  399 (641)
T KOG0772|consen  323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK---KP  399 (641)
T ss_pred             eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc---cc
Confidence            33 47899999877 999999998655332    4457776  8999999999  99999999999999999874   56


Q ss_pred             ceeccccC---CCeEEEEecCCCeEEEee
Q 021744          266 AASLKVHT---DSNRAHFSRDVTSLLGSV  291 (308)
Q Consensus       266 ~~~~~~~~---~~v~~~~s~d~~~l~~s~  291 (308)
                      +....+-.   ....|+|||+.++++++.
T Consensus       400 L~~~tgL~t~~~~tdc~FSPd~kli~TGt  428 (641)
T KOG0772|consen  400 LNVRTGLPTPFPGTDCCFSPDDKLILTGT  428 (641)
T ss_pred             hhhhcCCCccCCCCccccCCCceEEEecc
Confidence            66555332   233449999999988554

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3e-24  Score=164.39  Aligned_cols=225  Identities=13%  Similarity=0.111  Sum_probs=173.4

Q ss_pred             eeEEecC--CCe--eecc-----CCCcEEEEECCCCCCccccc-ceeeeeeeeeeeecCC--ceEEeeCCCeEEEEEcCC
Q 021744           71 AKRFANN--TWG--RNNN-----FNNHSNNYRAGNSKNSNINN-RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGD  138 (308)
Q Consensus        71 ~i~~s~~--g~~--~s~~-----~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~~  138 (308)
                      ++.|||=  +++  |++.     ..|++.|-+++.++-+.... ..-......+++++..  ..++++.||.+++||...
T Consensus        13 svqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~   92 (311)
T KOG0277|consen   13 SVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM   92 (311)
T ss_pred             eeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCC
Confidence            5777773  333  3332     35778888886444332222 2223447788888765  338889999999999876


Q ss_pred             CceeeeEeeCcccceEEEEEeCC-CCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE-E-c-CCCEEEEEc-CCcE
Q 021744          139 GFKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM-I-S-EGPWIFIGV-TNFV  212 (308)
Q Consensus       139 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~-~-~-~~~~l~~~~-d~~i  212 (308)
                      ...+++.++.|+..|.++.|++. ...++++|.|++|++|+....+.+.++. +...+... + | ...++++.+ |+++
T Consensus        93 ~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l  172 (311)
T KOG0277|consen   93 PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTL  172 (311)
T ss_pred             CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceE
Confidence            66889999999999999999984 4667888999999999999999999998 66665543 3 3 366777655 9999


Q ss_pred             EEEEcCCC-ceeeeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeE
Q 021744          213 KAWNTQTN-TDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSL  287 (308)
Q Consensus       213 ~~wd~~~~-~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l  287 (308)
                      ++||++.. +.+.+..|..++.++.|+.-   .+++|+.|+.|+.||++.-+   .++.++.+|+-.|+. .|||...-+
T Consensus       173 ~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r---~pl~eL~gh~~AVRkvk~Sph~~~l  249 (311)
T KOG0277|consen  173 RLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR---TPLFELNGHGLAVRKVKFSPHHASL  249 (311)
T ss_pred             EEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc---ccceeecCCceEEEEEecCcchhhH
Confidence            99999864 45578899999999999865   99999999999999999864   788999999999999 999988777


Q ss_pred             EEee--ceEEEEe
Q 021744          288 LGSV--SFIMFIG  298 (308)
Q Consensus       288 ~~s~--s~~i~~~  298 (308)
                      ++|+  +.+..++
T Consensus       250 LaSasYDmT~riw  262 (311)
T KOG0277|consen  250 LASASYDMTVRIW  262 (311)
T ss_pred             hhhccccceEEec
Confidence            6555  4444443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.9e-22  Score=152.29  Aligned_cols=265  Identities=12%  Similarity=0.093  Sum_probs=191.4

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCC------Cccccccc--eeEEecCCCe-eeccCCCcEEEEECC-
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPP------AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAG-   95 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~------~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~-   95 (308)
                      |.+.|.||..++.|+-....-..  .+--|+ .+..+      ....|.+.  |.+|+|+|.. ++|+.|++|++--++ 
T Consensus        44 g~lyavgsnskt~ric~yp~l~~--~r~~he-a~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~  120 (350)
T KOG0641|consen   44 GGLYAVGSNSKTFRICAYPALID--LRHAHE-AAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNA  120 (350)
T ss_pred             CceEEeccCCceEEEEccccccC--cccccc-cccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEeccc
Confidence            55789999999999864322100  000011 11111      12356666  9999999999 999999999997664 


Q ss_pred             -CCCCccc--ccceeeeeeeeeeeecCC----ce-EE-eeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEE
Q 021744           96 -NSKNSNI--NNRAVIKTDILCRNWVQG----NC-MY-GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY  166 (308)
Q Consensus        96 -~~~~~~~--~~~~~~~~~~~~~~~~~~----~~-~~-g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  166 (308)
                       +.+....  ....|...+..++|..+.    .+ ++ |..|-.|++-|..++ +..+.+.+|++.|.++--. ++-+++
T Consensus       121 dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g-~~~~a~sghtghilalysw-n~~m~~  198 (350)
T KOG0641|consen  121 DTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG-QGFHALSGHTGHILALYSW-NGAMFA  198 (350)
T ss_pred             ccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC-CcceeecCCcccEEEEEEe-cCcEEE
Confidence             2222222  335566778888887654    22 33 446788899999998 8899999999999887422 477999


Q ss_pred             EeeCCCcEEEEeCCCCeEEEEEe---CC-----CeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEE
Q 021744          167 SGSKDETVRVWDCASGQCAGVIN---LG-----GEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYA  234 (308)
Q Consensus       167 s~s~dg~v~~wd~~~~~~~~~~~---~~-----~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~  234 (308)
                      +|+.|.+|++||++-..++.++.   +.     ..+.++  -|.|++|++|. |....+||++.+..+ .+..|...|.+
T Consensus       199 sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~  278 (350)
T KOG0641|consen  199 SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRC  278 (350)
T ss_pred             ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeE
Confidence            99999999999999998888876   22     234444  47899999998 889999999999888 88899999999


Q ss_pred             EEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCe-EEEEecCCCeEEE-eeceEE
Q 021744          235 MAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSN-RAHFSRDVTSLLG-SVSFIM  295 (308)
Q Consensus       235 ~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v-~~~~s~d~~~l~~-s~s~~i  295 (308)
                      +.|+|.  ++++++.|..|++-|+...-...-++.....|...+ .+.|.|+.--+++ |.+.+.
T Consensus       279 vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~  343 (350)
T KOG0641|consen  279 VRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTA  343 (350)
T ss_pred             EEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceE
Confidence            999999  999999999999999986322112333344666654 4499998765554 444333

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.1e-24  Score=170.33  Aligned_cols=246  Identities=13%  Similarity=0.178  Sum_probs=192.9

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECC----CCC
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAG----NSK   98 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~----~~~   98 (308)
                      .+.+.++|.|.+.++|...++            .....+.||.+.  +|.|++.+.+ ++++.|++-.||...    .++
T Consensus       160 qpi~gtASADhTA~iWs~Esg------------~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~  227 (481)
T KOG0300|consen  160 QPICGTASADHTARIWSLESG------------ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPS  227 (481)
T ss_pred             CcceeecccccceeEEeeccc------------cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCC
Confidence            458999999999999998887            345567899999  9999999999 999999999999731    111


Q ss_pred             --------------------------------Cc---ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCcee
Q 021744           99 --------------------------------NS---NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKL  142 (308)
Q Consensus        99 --------------------------------~~---~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~  142 (308)
                                                      .+   .....+|...+.+|.|...+.. ++++.|.+..+||++++ +.
T Consensus       228 ~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg-e~  306 (481)
T KOG0300|consen  228 NNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG-EV  306 (481)
T ss_pred             CCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC-ce
Confidence                                            00   1122345555667777777754 99999999999999999 89


Q ss_pred             eeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC-CeEEEEEe-CCCeeEEE-EcCCCEEEEEc-CCcEEEEEcC
Q 021744          143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-GQCAGVIN-LGGEVGCM-ISEGPWIFIGV-TNFVKAWNTQ  218 (308)
Q Consensus       143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~-~~~~~~~~-~~~~v~~~-~~~~~~l~~~~-d~~i~~wd~~  218 (308)
                      +..+.||....+.++-+|..+++++.+.|.+.++||++. -+.+..|+ |...+++. +..+..+++|+ |.+|++||++
T Consensus       307 v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLr  386 (481)
T KOG0300|consen  307 VNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLR  386 (481)
T ss_pred             eccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeec
Confidence            999999999999999999999999999999999999984 34566676 77777766 55567777777 7899999999


Q ss_pred             CCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCC
Q 021744          219 TNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDV  284 (308)
Q Consensus       219 ~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~  284 (308)
                      ..... ......++++.++++..  +++.-.+++.|++||++......-+...-.+|..-|+| +|..+.
T Consensus       387 NMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eeh  456 (481)
T KOG0300|consen  387 NMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEH  456 (481)
T ss_pred             cccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccC
Confidence            87543 22234668888999877  88888999999999998753211122234588888998 998654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.93  E-value=4.1e-25  Score=182.71  Aligned_cols=234  Identities=13%  Similarity=0.172  Sum_probs=185.0

Q ss_pred             Cccccccc--eeEEec-CCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcC
Q 021744           63 AATANGAA--AKRFAN-NTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVG  137 (308)
Q Consensus        63 ~~~gh~~~--~i~~s~-~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~  137 (308)
                      .+.||+..  ++.|.| .+.+ ++++.|+.|+||++-..........+|...|..++|+.+|.. ++++.|+.|++||++
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE  288 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE  288 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccc
Confidence            44588888  899999 5666 999999999999996644444566789999999999999965 999999999999999


Q ss_pred             CCceeeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcE
Q 021744          138 DGFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFV  212 (308)
Q Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i  212 (308)
                      ++ +.+..+. -...++++.|+|++ +.+++|+.|+.|+.||+++++.++++. +-+.+..+  .++++.+++++ |+++
T Consensus       289 TG-~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~  366 (503)
T KOG0282|consen  289 TG-QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSV  366 (503)
T ss_pred             cc-eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccE
Confidence            99 7777776 34677999999998 788999999999999999999888887 55666554  57888888766 8899


Q ss_pred             EEEEcCCCceeeee--CCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCC---CeEEEEecCCC
Q 021744          213 KAWNTQTNTDLSLS--GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTD---SNRAHFSRDVT  285 (308)
Q Consensus       213 ~~wd~~~~~~~~~~--~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~v~~~~s~d~~  285 (308)
                      ++|+.+..-.+.+.  .+.-...++..+|+  ++++-+.|+.|.+|.+...-. ....+.+++|..   .+.+.|||||+
T Consensus       367 riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r-~nkkK~feGh~vaGys~~v~fSpDG~  445 (503)
T KOG0282|consen  367 RIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR-LNKKKRFEGHSVAGYSCQVDFSPDGR  445 (503)
T ss_pred             EEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc-cCHhhhhcceeccCceeeEEEcCCCC
Confidence            99999988766322  22234567888888  999999999999999765422 233455677754   34449999999


Q ss_pred             eEEEe-eceEEEEee
Q 021744          286 SLLGS-VSFIMFIGQ  299 (308)
Q Consensus       286 ~l~~s-~s~~i~~~~  299 (308)
                      +|+++ ++..++++.
T Consensus       446 ~l~SGdsdG~v~~wd  460 (503)
T KOG0282|consen  446 TLCSGDSDGKVNFWD  460 (503)
T ss_pred             eEEeecCCccEEEee
Confidence            99854 466666655

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1e-23  Score=185.20  Aligned_cols=191  Identities=8%  Similarity=0.147  Sum_probs=154.7

Q ss_pred             ccccccc--eeEEecCCCeeeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC-ce-EEeeCCCeEEEEEcCCC
Q 021744           64 ATANGAA--AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG-NC-MYGEKCKFLHSWTVGDG  139 (308)
Q Consensus        64 ~~gh~~~--~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~d~~i~iwd~~~~  139 (308)
                      +.||.+.  .+.||.++-+++++.|+|||||++...+.+  ....|...|.+++|+|-. ++ ++|+-|+.||||++...
T Consensus       365 f~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL--~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~  442 (712)
T KOG0283|consen  365 FKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECL--KVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK  442 (712)
T ss_pred             hhccchhheecccccCCeeEeccccccEEeecCCCccee--eEEecCCeeEEEEecccCCCcEeecccccceEEeecCcC
Confidence            3499888  899999887799999999999999877766  566788889999999966 33 99999999999999987


Q ss_pred             ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe---------CCCeeEEE--Ec--CCCEEEE
Q 021744          140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN---------LGGEVGCM--IS--EGPWIFI  206 (308)
Q Consensus       140 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~---------~~~~v~~~--~~--~~~~l~~  206 (308)
                       +...-.. -.+-|++++|.|+|+..+.|+.+|.+++|+.+..+....+.         ....|+.+  ++  ..+.|++
T Consensus       443 -~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT  520 (712)
T KOG0283|consen  443 -KVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT  520 (712)
T ss_pred             -eeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEe
Confidence             4444333 44899999999999999999999999999999877776554         12357766  22  2346667


Q ss_pred             EcCCcEEEEEcCCCcee-eeeCCCC--CEEEEEEeCC--EEEEEcCCCeEEEEEcCC
Q 021744          207 GVTNFVKAWNTQTNTDL-SLSGPVG--QVYAMAVGND--LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       207 ~~d~~i~~wd~~~~~~~-~~~~~~~--~v~~~~~~~~--~l~~g~~dg~i~iwd~~~  258 (308)
                      +.|..|+|||++...++ .++++..  .-....|+.|  +|+++++|..|++|++..
T Consensus       521 SnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  521 SNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             cCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            77999999999888777 6665432  3456778888  999999999999999854

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=7.3e-24  Score=174.38  Aligned_cols=233  Identities=16%  Similarity=0.237  Sum_probs=188.9

Q ss_pred             ccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCc----cc-------------ccceeeeeeeeeeeecCCce-EE
Q 021744           66 ANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS----NI-------------NNRAVIKTDILCRNWVQGNC-MY  124 (308)
Q Consensus        66 gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~----~~-------------~~~~~~~~~~~~~~~~~~~~-~~  124 (308)
                      .|.-+  +++++|+.++ ++++.|++|.-|++.+++..    ..             ....|.+.+.+++.++++.+ ++
T Consensus       140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat  219 (479)
T KOG0299|consen  140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT  219 (479)
T ss_pred             cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence            45555  8999999999 99999999999999776522    00             11256666899999999988 99


Q ss_pred             eeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEEE--cCC
Q 021744          125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCMI--SEG  201 (308)
Q Consensus       125 g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~~--~~~  201 (308)
                      |+.|..|.||+.++. +.++.+++|.+.|.+++|-.....+++++.|++|++|++.....+.++. |+..+..+.  ..+
T Consensus       220 gg~d~~v~Iw~~~t~-ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~re  298 (479)
T KOG0299|consen  220 GGRDRHVQIWDCDTL-EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRE  298 (479)
T ss_pred             cCCCceEEEecCccc-chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhccc
Confidence            999999999999999 8999999999999999999888889999999999999999877776665 888888773  456


Q ss_pred             CEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceecc-c-------
Q 021744          202 PWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLK-V-------  271 (308)
Q Consensus       202 ~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-~-------  271 (308)
                      +.+.+|. |.++++|++.....+.+.++.+.+-|++|-.+ .|++|+.+|.|.+|++...    +++.+.. .       
T Consensus       299 R~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KK----kplf~~~~AHgv~~~~  374 (479)
T KOG0299|consen  299 RCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKK----KPLFTSRLAHGVIPEL  374 (479)
T ss_pred             ceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeeccc----CceeEeeccccccCCc
Confidence            6777775 99999999966666688899999999999888 9999999999999999987    4444332 1       


Q ss_pred             ----cCCCeEE-EEecCCCeEEE-eeceEEEEeecCce
Q 021744          272 ----HTDSNRA-HFSRDVTSLLG-SVSFIMFIGQNNKG  303 (308)
Q Consensus       272 ----~~~~v~~-~~s~d~~~l~~-s~s~~i~~~~~~~~  303 (308)
                          +..+|++ +..|...++++ |.+..+-+|+...+
T Consensus       375 ~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  375 DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             cccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence                1237888 88898888874 44555555555554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.92  E-value=4.9e-23  Score=168.46  Aligned_cols=249  Identities=12%  Similarity=0.132  Sum_probs=201.8

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      +.+.||+.|+++-++|....            .....+.||+..  .+.++|+... ++++.|..|+||...... ....
T Consensus       232 ~~ilTGG~d~~av~~d~~s~------------q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~~~  298 (506)
T KOG0289|consen  232 SKILTGGEDKTAVLFDKPSN------------QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EPTS  298 (506)
T ss_pred             CcceecCCCCceEEEecchh------------hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-Cccc
Confidence            67999999999999998876            345567899888  7889999988 999999999999985543 3346


Q ss_pred             cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeC--cccceEEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744          104 NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG--HQKVVSGITLPSGSDKLYSGSKDETVRVWDCA  180 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~  180 (308)
                      ...|...|..+...|.|.+ ++++.|+..-..|++++. .+.....  ..-.+++.+|+|||..+.+|..|+.|++||+.
T Consensus       299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~-~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk  377 (506)
T KOG0289|consen  299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS-QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK  377 (506)
T ss_pred             cccccccceeeeeccCCcEEEEecCCceEEEEEccCCc-EEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence            6788888999999999988 899999999999999994 4333321  22358999999999999999999999999999


Q ss_pred             CCeEEEEEe-CCCeeEEE-E-cCCCEEEEEc-CCcEEEEEcCCCcee-eeeC-CCCCEEEEEEeCC--EEEEEcCCCeEE
Q 021744          181 SGQCAGVIN-LGGEVGCM-I-SEGPWIFIGV-TNFVKAWNTQTNTDL-SLSG-PVGQVYAMAVGND--LLFAGTQDGAIL  252 (308)
Q Consensus       181 ~~~~~~~~~-~~~~v~~~-~-~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~-~~~~v~~~~~~~~--~l~~g~~dg~i~  252 (308)
                      +...+..|. |.+++..+ + -+|-+|+++. |+.|++||+|..+.. ++.- ...++.++.|.+.  +|+.++.|=.|+
T Consensus       378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy  457 (506)
T KOG0289|consen  378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVY  457 (506)
T ss_pred             CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEE
Confidence            999888888 88899887 3 4577888766 778999999988765 3332 2337999999887  888887775666


Q ss_pred             EEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          253 AWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       253 iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      +++-.+.  .|..+..+..|.+..+. .|....++++.++
T Consensus       458 ~~~k~~k--~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~s  495 (506)
T KOG0289|consen  458 ICKKKTK--SWTEIKELADHSGLSTGVRFGEHAQYLASTS  495 (506)
T ss_pred             EEecccc--cceeeehhhhcccccceeeecccceEEeecc
Confidence            6654444  36888899999988888 9999888888554

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.92  E-value=6.5e-24  Score=166.97  Aligned_cols=270  Identities=14%  Similarity=0.185  Sum_probs=194.0

Q ss_pred             CCCCCceEEecCCCeEEEeecCCC-CC-CCCCcccc----cCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEE
Q 021744           23 GGGGGLSTADTRQKVCNYWRAGKC-NR-FPCPYLHR----ELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYR   93 (308)
Q Consensus        23 ~~~~~~~~s~s~d~~i~~W~~~~~-~~-~~~~~~~~----~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd   93 (308)
                      +-.|.++||||.|..|++.|+... .+ .+......    ..|.-..+--|...  ++.|+|...+ ++|+.|++|+++|
T Consensus       121 s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFD  200 (430)
T KOG0640|consen  121 SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFD  200 (430)
T ss_pred             CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEe
Confidence            445889999999999999997742 01 11111111    12333344467666  8999999999 9999999999999


Q ss_pred             CCCCCCccc-ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeE---eeCcccceEEEEEeCCCCEEEEe
Q 021744           94 AGNSKNSNI-NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQ---LEGHQKVVSGITLPSGSDKLYSG  168 (308)
Q Consensus        94 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~  168 (308)
                      +........ ........+.++.|.|.|.+ +.|.+..++++||+++- +....   -.+|++.|+++.+++.+++-+++
T Consensus       201 fsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~-QcfvsanPd~qht~ai~~V~Ys~t~~lYvTa  279 (430)
T KOG0640|consen  201 FSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY-QCFVSANPDDQHTGAITQVRYSSTGSLYVTA  279 (430)
T ss_pred             cccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccce-eEeeecCcccccccceeEEEecCCccEEEEe
Confidence            953321110 11122334899999999988 77888899999999988 44332   24699999999999999999999


Q ss_pred             eCCCcEEEEeCCCCeEEEEEe--CC-CeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCC-----CCCEEEEE
Q 021744          169 SKDETVRVWDCASGQCAGVIN--LG-GEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGP-----VGQVYAMA  236 (308)
Q Consensus       169 s~dg~v~~wd~~~~~~~~~~~--~~-~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~-----~~~v~~~~  236 (308)
                      |.||.|++||--+++++.++.  |+ ..+.+.  ..+++++++++ |..+++|.+.++..+ .+.+-     ..--+...
T Consensus       280 SkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAv  359 (430)
T KOG0640|consen  280 SKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAV  359 (430)
T ss_pred             ccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhh
Confidence            999999999999999999987  43 344443  47899999765 999999999999887 44432     11223445


Q ss_pred             EeCC--EEEEEc-CCCeEEEEEcCCCCcccccceec-cccCCCeEE-EEecCCCeEEEee-ceEEEE
Q 021744          237 VGND--LLFAGT-QDGAILAWKFNVTTNCFEPAASL-KVHTDSNRA-HFSRDVTSLLGSV-SFIMFI  297 (308)
Q Consensus       237 ~~~~--~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~  297 (308)
                      |+..  +++.-. ..+.+.-||.++.    ..+..+ .+|.+.++. .-||.+.-+++++ +...-.
T Consensus       360 FNhtEdyVl~pDEas~slcsWdaRta----dr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRF  422 (430)
T KOG0640|consen  360 FNHTEDYVLFPDEASNSLCSWDARTA----DRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARF  422 (430)
T ss_pred             hcCccceEEccccccCceeeccccch----hhhhhcccCCCCCceEEEeCCCCCceeeecccceeee
Confidence            5544  554433 3567899999987    333333 389999999 9999998888666 444433

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=1.3e-23  Score=172.75  Aligned_cols=231  Identities=15%  Similarity=0.171  Sum_probs=177.7

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEECCCCCCcc---------cccceeeeeeeeeeeecCC--ceEEeeCCCeEEEEEcC
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSN---------INNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVG  137 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~  137 (308)
                      .+++-|....  |+.+..+.|.|||........         ..+.+|.+.-..+.|++..  ..++++.|+.|.+||+.
T Consensus       129 RaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~  208 (422)
T KOG0264|consen  129 RARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDIN  208 (422)
T ss_pred             hhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEecc
Confidence            5667777665  888999999999996432111         1346677655556666654  55999999999999997


Q ss_pred             CCc------eeeeEeeCcccceEEEEEeCC-CCEEEEeeCCCcEEEEeCCC--CeEEEEEe-CCCeeEEEE---cCCCEE
Q 021744          138 DGF------KLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCAS--GQCAGVIN-LGGEVGCMI---SEGPWI  204 (308)
Q Consensus       138 ~~~------~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~v~~wd~~~--~~~~~~~~-~~~~v~~~~---~~~~~l  204 (308)
                      ...      .+...+.+|++.|..++|++- ..++++++.|+.+.|||+++  .++..... |..++.|+.   .++.+|
T Consensus       209 ~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~il  288 (422)
T KOG0264|consen  209 AESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFIL  288 (422)
T ss_pred             ccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceE
Confidence            442      345678899999999999984 46789999999999999995  44444444 788898884   246677


Q ss_pred             EEEc-CCcEEEEEcCCCcee--eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCc----------cccccee
Q 021744          205 FIGV-TNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTN----------CFEPAAS  268 (308)
Q Consensus       205 ~~~~-d~~i~~wd~~~~~~~--~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~----------~~~~~~~  268 (308)
                      |+|+ |++|.+||+|.....  ++.+|...|.++.|+|.   .||+++.|+.+.+||+..-..          -.+++..
T Consensus       289 AT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~  368 (422)
T KOG0264|consen  289 ATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFI  368 (422)
T ss_pred             EeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEE
Confidence            7777 999999999986543  89999999999999998   999999999999999864211          0134455


Q ss_pred             ccccCCCeEE-EEecCCCeEEEee--ceEEEEeecC
Q 021744          269 LKVHTDSNRA-HFSRDVTSLLGSV--SFIMFIGQNN  301 (308)
Q Consensus       269 ~~~~~~~v~~-~~s~d~~~l~~s~--s~~i~~~~~~  301 (308)
                      ..+|...|.. .|+|...++++|.  +..+.+|+-.
T Consensus       369 HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  369 HGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            6689999999 9999999999776  6666666544

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.92  E-value=8.1e-25  Score=177.75  Aligned_cols=234  Identities=17%  Similarity=0.219  Sum_probs=187.5

Q ss_pred             cccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC-cccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCC
Q 021744           65 TANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN-SNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDG  139 (308)
Q Consensus        65 ~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~  139 (308)
                      ..|.+.  .+.|-++... ++|+.|..|++|++...+. ....+.+..+.+..+.|-+++.. ++++.|+.+++|++...
T Consensus       172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~  251 (459)
T KOG0288|consen  172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL  251 (459)
T ss_pred             hccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence            355555  7889898777 9999999999999965542 22234445556888999988866 88999999999999998


Q ss_pred             ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEc-CCcEEEEEcC
Q 021744          140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGV-TNFVKAWNTQ  218 (308)
Q Consensus       140 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~  218 (308)
                       +...+|.||++.|+++.|......+++|+.|.+|++||+....+.+++-....+..+......+++|. |++|++||.+
T Consensus       252 -r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~R  330 (459)
T KOG0288|consen  252 -RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIR  330 (459)
T ss_pred             -hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEecc
Confidence             88999999999999999987766699999999999999999999888876666666655566677777 9999999999


Q ss_pred             CCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecccc----CCCeEE-EEecCCCeEE-E
Q 021744          219 TNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH----TDSNRA-HFSRDVTSLL-G  289 (308)
Q Consensus       219 ~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~v~~-~~s~d~~~l~-~  289 (308)
                      +..+. .... .+.|+++..+++  .+++++.|.++.+.|+++.    +....+...    ....+. .|||++.|++ +
T Consensus       331 s~~~~~sv~~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~----eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAG  405 (459)
T KOG0288|consen  331 SADKTRSVPL-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK----EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAG  405 (459)
T ss_pred             CCceeeEeec-CcceeeEeeccCCeEEeeecCCCceeeeecccc----cEEEEeeccccccccccceeEECCCCceeeec
Confidence            99888 4444 449999999999  7888899999999999986    444444421    123444 9999999998 5


Q ss_pred             eeceEEEEeecCcee
Q 021744          290 SVSFIMFIGQNNKGV  304 (308)
Q Consensus       290 s~s~~i~~~~~~~~~  304 (308)
                      |++..+|+|....+.
T Consensus       406 S~dgsv~iW~v~tgK  420 (459)
T KOG0288|consen  406 SADGSVYIWSVFTGK  420 (459)
T ss_pred             cCCCcEEEEEccCce
Confidence            557888888765554

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.6e-24  Score=188.33  Aligned_cols=225  Identities=15%  Similarity=0.173  Sum_probs=180.1

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCCCc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~  100 (308)
                      -.++|||++..|.|-+||.+...|         .++...+..|+..  ++.|++...+  ++|+.||+|++||+...+..
T Consensus        99 ~~NlIAT~s~nG~i~vWdlnk~~r---------nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~  169 (839)
T KOG0269|consen   99 YSNLIATCSTNGVISVWDLNKSIR---------NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK  169 (839)
T ss_pred             hhhhheeecCCCcEEEEecCcccc---------chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence            357899999999999999987422         3333445667766  8999987766  99999999999999755443


Q ss_pred             ccccceeeeeeeeeeeecCC--ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 021744          101 NINNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (308)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd  178 (308)
                      . ........++.+.|+|..  .++++.+.|.+++||++...+....+.+|.++|.++.|+|+..+||||+.|++|+|||
T Consensus       170 ~-t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd  248 (839)
T KOG0269|consen  170 S-TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD  248 (839)
T ss_pred             c-cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence            2 223344558899999875  3488889999999999988778889999999999999999999999999999999999


Q ss_pred             CCCCe--EEEEEeCCCeeEEE-E-cCCC-EEEEEc---CCcEEEEEcCCCcee--eeeCCCCCEEEEEEeCC---EEEEE
Q 021744          179 CASGQ--CAGVINLGGEVGCM-I-SEGP-WIFIGV---TNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAG  245 (308)
Q Consensus       179 ~~~~~--~~~~~~~~~~v~~~-~-~~~~-~l~~~~---d~~i~~wd~~~~~~~--~~~~~~~~v~~~~~~~~---~l~~g  245 (308)
                      +.+.+  .+.+++...++.++ + |... .|++++   |-.|+|||++..-..  ++..|.+.++.++|...   .+.++
T Consensus       249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~  328 (839)
T KOG0269|consen  249 MTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSC  328 (839)
T ss_pred             ccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEee
Confidence            98654  55666677888887 4 4444 455544   779999999976544  78899999999999763   89999


Q ss_pred             cCCCeEEEEEcCCC
Q 021744          246 TQDGAILAWKFNVT  259 (308)
Q Consensus       246 ~~dg~i~iwd~~~~  259 (308)
                      +.||.|..-.+++.
T Consensus       329 sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  329 SKDGTVLQHLFKNA  342 (839)
T ss_pred             cCccHHHHhhhhcc
Confidence            99999887766654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=3.1e-25  Score=191.46  Aligned_cols=242  Identities=18%  Similarity=0.285  Sum_probs=201.0

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      ........+..+++|+....                  ..|...  ++..-..++. ++|+.|..+-+|.+.....+. .
T Consensus         5 ~~~m~~~~~t~Lr~~~~~~~------------------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~-S   65 (825)
T KOG0267|consen    5 EFLMKTKRATKLRVWDTREF------------------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT-S   65 (825)
T ss_pred             cccceeeeeeccccccchhh------------------hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh-e
Confidence            34555666778888987654                  122222  3444444556 999999999999986554432 4


Q ss_pred             cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744          104 NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~  182 (308)
                      ..+|...+.++.|.+.... +.|..+|+|++||+.+. +.+++|.+|...+.++.|+|-+.+.++|+.|..+++||++..
T Consensus        66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA-k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~  144 (825)
T KOG0267|consen   66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA-KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK  144 (825)
T ss_pred             eeccCCcceeeecCcchhhhcccccCCceeeeehhhh-hhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc
Confidence            6788889999999998866 88899999999999998 889999999999999999999999999999999999999988


Q ss_pred             eEEEEEe-CCCeeEE--EEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEE
Q 021744          183 QCAGVIN-LGGEVGC--MISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK  255 (308)
Q Consensus       183 ~~~~~~~-~~~~v~~--~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd  255 (308)
                      .+...+. |...+.+  +.|+|++++.+. |.++++||+..++.. .+..|+..+.++.|+|.  ++++|+.|++|++||
T Consensus       145 Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~d  224 (825)
T KOG0267|consen  145 GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWD  224 (825)
T ss_pred             CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeec
Confidence            8888888 4444444  369999999887 799999999999988 88999999999999998  889999999999999


Q ss_pred             cCCCCcccccceeccccCCCeEE-EEecCCCeEEEeec
Q 021744          256 FNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVS  292 (308)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s  292 (308)
                      +++-    +.+.........|.+ +|+|++..++.+..
T Consensus       225 letf----e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q  258 (825)
T KOG0267|consen  225 LETF----EVISSGKPETDGVRSLAFNPDGKIVLSGEQ  258 (825)
T ss_pred             ccee----EEeeccCCccCCceeeeecCCceeeecCch
Confidence            9984    777777777888999 99999988876653

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.1e-23  Score=160.38  Aligned_cols=236  Identities=12%  Similarity=0.066  Sum_probs=167.4

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEe-c-CCCe-eeccCCCcEEEEECCCCCCc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFA-N-NTWG-RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s-~-~g~~-~s~~~d~~i~vwd~~~~~~~  100 (308)
                      |.+|||+|+|++|||+.......         ..+...+.||+++  .++|. | -|.+ |++++|+.|.||.-++++..
T Consensus        23 gkrlATcsSD~tVkIf~v~~n~~---------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~   93 (299)
T KOG1332|consen   23 GKRLATCSSDGTVKIFEVRNNGQ---------SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWT   93 (299)
T ss_pred             cceeeeecCCccEEEEEEcCCCC---------ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchh
Confidence            56799999999999999876510         1344568899999  66664 4 5777 99999999999999877543


Q ss_pred             cc-ccceeeeeeeeeeeecCC---ceEEeeCCCeEEEEEcCCC--ceeeeEeeCcccceEEEEEeCC---CCEEEEeeCC
Q 021744          101 NI-NNRAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDG--FKLLTQLEGHQKVVSGITLPSG---SDKLYSGSKD  171 (308)
Q Consensus       101 ~~-~~~~~~~~~~~~~~~~~~---~~~~g~~d~~i~iwd~~~~--~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~s~d  171 (308)
                      .. ....|...+.++++-|.+   .++.++.||.|.|.+.++.  ....+....|+-.|++++|.|.   |..+-.+..+
T Consensus        94 k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~  173 (299)
T KOG1332|consen   94 KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAA  173 (299)
T ss_pred             hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccc
Confidence            22 335677779999999887   3388999999999988754  2334456789999999999985   3111100000


Q ss_pred             CcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee---eeeCCCCCEEEEEEeCC------E
Q 021744          172 ETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGND------L  241 (308)
Q Consensus       172 g~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~---~~~~~~~~v~~~~~~~~------~  241 (308)
                                                  .-+.|++|. |+.|++|+...++-+   ++.+|.+.|+.++|.|.      +
T Consensus       174 ----------------------------~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~  225 (299)
T KOG1332|consen  174 ----------------------------KVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKST  225 (299)
T ss_pred             ----------------------------ccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCcee
Confidence                                        012233332 555666655554322   57899999999999997      8


Q ss_pred             EEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          242 LFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       242 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      ||++++||+|.||-.+.... ......++.....+.. .||..|..|++++ +..+.++.
T Consensus       226 iAS~SqDg~viIwt~~~e~e-~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  226 IASCSQDGTVIIWTKDEEYE-PWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             eEEecCCCcEEEEEecCccC-cccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            99999999999998874321 1233445556778888 9999999999776 54444443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=5.9e-23  Score=180.04  Aligned_cols=282  Identities=14%  Similarity=0.143  Sum_probs=208.9

Q ss_pred             cCCCCCCCCCCceEEecCCCeEEEeecCCCCCC------------------CCCcccccCCCC--------------C--
Q 021744           17 GGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRF------------------PCPYLHRELPLP--------------P--   62 (308)
Q Consensus        17 ~~~~~~~~~~~~~~s~s~d~~i~~W~~~~~~~~------------------~~~~~~~~~~~~--------------~--   62 (308)
                      ...+...||.+++|+++..|.+.+||.......                  .+|.+...-+-.              .  
T Consensus       248 tslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~L  327 (910)
T KOG1539|consen  248 TSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLL  327 (910)
T ss_pred             eEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhe
Confidence            444667788999999999999999998764221                  111111100000              0  


Q ss_pred             -Cccccccc--eeEEe-cCCCe-eeccCCCcEEEEECCC-------CC--------------------------------
Q 021744           63 -AATANGAA--AKRFA-NNTWG-RNNNFNNHSNNYRAGN-------SK--------------------------------   98 (308)
Q Consensus        63 -~~~gh~~~--~i~~s-~~g~~-~s~~~d~~i~vwd~~~-------~~--------------------------------   98 (308)
                       .-.||..+  +++|. .+|.. .+++.|++.+.+++..       ++                                
T Consensus       328 R~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~R  407 (910)
T KOG1539|consen  328 RSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAR  407 (910)
T ss_pred             eeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccch
Confidence             11277777  88887 45555 8999999888887620       00                                


Q ss_pred             -------------------------Ccccccceee------eeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEe
Q 021744           99 -------------------------NSNINNRAVI------KTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQL  146 (308)
Q Consensus        99 -------------------------~~~~~~~~~~------~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~  146 (308)
                                               ..+.....+.      ..+.+++.++.|++ +.|...|.|-+|+++++ -....+
T Consensus       408 E~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG-i~r~sf  486 (910)
T KOG1539|consen  408 EKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG-IHRKSF  486 (910)
T ss_pred             hhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC-eeeccc
Confidence                                     0000000011      22566777788877 67889999999999999 566666


Q ss_pred             ---eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEE--cCCCEEEEE-cCCcEEEEEcCCC
Q 021744          147 ---EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI--SEGPWIFIG-VTNFVKAWNTQTN  220 (308)
Q Consensus       147 ---~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~-~d~~i~~wd~~~~  220 (308)
                         ..|..+|+.++.+.-++.+++++.+|.+++||......+..+.....+.++.  .....++++ .|-.|.++|..+.
T Consensus       487 ~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~  566 (910)
T KOG1539|consen  487 GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR  566 (910)
T ss_pred             ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhh
Confidence               5799999999999988999999999999999999999888888777776663  334455544 4779999999998


Q ss_pred             cee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee--ceE
Q 021744          221 TDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV--SFI  294 (308)
Q Consensus       221 ~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~--s~~  294 (308)
                      +.. .+.+|.+.|++++||||  +|++++.|++|++||+.++    .++-.+.- ..++.. .|||+|++|++..  -..
T Consensus       567 kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~----~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~g  641 (910)
T KOG1539|consen  567 KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG----TLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQNG  641 (910)
T ss_pred             hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc----ceeeeEec-CCcceeeEECCCCCEEEEEEecCce
Confidence            888 78899999999999999  9999999999999999997    66666654 344555 9999999999766  488


Q ss_pred             EEEeecCcee
Q 021744          295 MFIGQNNKGV  304 (308)
Q Consensus       295 i~~~~~~~~~  304 (308)
                      ||+|.|.--+
T Consensus       642 IylWsNkslF  651 (910)
T KOG1539|consen  642 IYLWSNKSLF  651 (910)
T ss_pred             EEEEEchhHh
Confidence            9998875443

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=4.5e-23  Score=170.91  Aligned_cols=229  Identities=14%  Similarity=0.163  Sum_probs=180.2

Q ss_pred             cccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCce
Q 021744           65 TANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFK  141 (308)
Q Consensus        65 ~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~  141 (308)
                      ..|... .++|+|...+ +.....-.+.||+..+..... ....+++.+..+.|-.||.. +.|+..|.|+|+|+.+. .
T Consensus        24 ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k-~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r-~  101 (487)
T KOG0310|consen   24 KEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRK-TFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR-V  101 (487)
T ss_pred             cccCcceeEecCCCCCCceEEecccEEEEEecchhhhhh-hHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH-H
Confidence            344444 8999999998 555556679999986554331 23456667899999999987 78889999999997775 7


Q ss_pred             eeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--Ec-CCCEEEEEc-CCcEEEE
Q 021744          142 LLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--IS-EGPWIFIGV-TNFVKAW  215 (308)
Q Consensus       142 ~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~-~~~~l~~~~-d~~i~~w  215 (308)
                      .++.+.+|+.+|..+.|+|++ ..+++|+.|+.+++||+.+......+. |..-+.|.  .| ++.++++|+ ||.|++|
T Consensus       102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~  181 (487)
T KOG0310|consen  102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW  181 (487)
T ss_pred             HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence            889999999999999999965 667899999999999999888644454 77888876  34 345677877 9999999


Q ss_pred             EcCCC-ceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          216 NTQTN-TDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       216 d~~~~-~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      |++.. ..+.-..|..+|.++.+.|.  .+++++ ...|++||+.++.   +.+..+..|...|+| ++..++..|++++
T Consensus       182 DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~---qll~~~~~H~KtVTcL~l~s~~~rLlS~s  257 (487)
T KOG0310|consen  182 DTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGG---QLLTSMFNHNKTVTCLRLASDSTRLLSGS  257 (487)
T ss_pred             EeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCc---eehhhhhcccceEEEEEeecCCceEeecc
Confidence            99988 44455578999999999998  666655 4589999999763   667777779999999 9999998888666


Q ss_pred             -ceEEEEee
Q 021744          292 -SFIMFIGQ  299 (308)
Q Consensus       292 -s~~i~~~~  299 (308)
                       +..+-+..
T Consensus       258 LD~~VKVfd  266 (487)
T KOG0310|consen  258 LDRHVKVFD  266 (487)
T ss_pred             cccceEEEE
Confidence             54444433

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.92  E-value=1.3e-22  Score=156.57  Aligned_cols=220  Identities=12%  Similarity=0.118  Sum_probs=182.9

Q ss_pred             CCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcC
Q 021744           62 PAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVG  137 (308)
Q Consensus        62 ~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~  137 (308)
                      .-++||+.+  .+.++.+|.+ ++++.|.+..||-..+++.++ ...+|...+++|...-+... ++|+.|.++++||++
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG-ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG-TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE   82 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee-eecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence            345788888  8999999999 999999999999887777664 56789999999998777654 999999999999999


Q ss_pred             CCceeeeEeeCcccceEEEEEeCCCCEEEEeeC-----CCcEEEEeCC-------CCeEEEEEe-CCCeeEE-EE-cCCC
Q 021744          138 DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-----DETVRVWDCA-------SGQCAGVIN-LGGEVGC-MI-SEGP  202 (308)
Q Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-----dg~v~~wd~~-------~~~~~~~~~-~~~~v~~-~~-~~~~  202 (308)
                      ++ +.+..++ -..+|..+.|++++++++.+..     .+.|.++|++       ..++...+. .+..++. ++ +-++
T Consensus        83 tG-k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~  160 (327)
T KOG0643|consen   83 TG-KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE  160 (327)
T ss_pred             CC-cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence            99 7888877 5689999999999998877654     4679999998       355566666 4444443 34 6789


Q ss_pred             EEEEEc-CCcEEEEEcCCCcee--eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeE
Q 021744          203 WIFIGV-TNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNR  277 (308)
Q Consensus       203 ~l~~~~-d~~i~~wd~~~~~~~--~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~  277 (308)
                      +|++|. +|.|..||+++++..  ....|...|+.|.++++  ++++++.|.+-++||+.+-    +.++++. -..+|+
T Consensus       161 ~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl----~v~Kty~-te~PvN  235 (327)
T KOG0643|consen  161 TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL----EVLKTYT-TERPVN  235 (327)
T ss_pred             EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce----eeEEEee-eccccc
Confidence            999987 999999999998766  55678999999999999  9999999999999999995    7777776 456888


Q ss_pred             E-EEecCCCeEEE
Q 021744          278 A-HFSRDVTSLLG  289 (308)
Q Consensus       278 ~-~~s~d~~~l~~  289 (308)
                      + +++|-...++.
T Consensus       236 ~aaisP~~d~Vil  248 (327)
T KOG0643|consen  236 TAAISPLLDHVIL  248 (327)
T ss_pred             ceecccccceEEe
Confidence            8 99997776663

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=1.6e-21  Score=163.91  Aligned_cols=252  Identities=8%  Similarity=0.007  Sum_probs=173.4

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe--eeccCCCcEEEEECCCCCCcccc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      .+++|++.|+.+++||..+++           .. ....++... .++|+|++..  ++++.++.|++||..+++.....
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~-----------~~-~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~   69 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLE-----------VT-RTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL   69 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCc-----------eE-EEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec
Confidence            568999999999999987761           11 111222223 6899999986  67778999999999877654221


Q ss_pred             cceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCC-cEEEEeCC
Q 021744          104 NRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE-TVRVWDCA  180 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg-~v~~wd~~  180 (308)
                      ..  ...+..+.+++++..  +++..++.|++||+.+. +.+..+.. ...+.+++|+|++.++++++.++ .+.+||.+
T Consensus        70 ~~--~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~-~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~  145 (300)
T TIGR03866        70 PS--GPDPELFALHPNGKILYIANEDDNLVTVIDIETR-KVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK  145 (300)
T ss_pred             cC--CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCC-eEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCC
Confidence            11  122456778888865  44557899999999987 66666653 34568899999999999888775 56778999


Q ss_pred             CCeEEEEEeCCCeeE--EEEcCCCEEEEE-c-CCcEEEEEcCCCcee-eeeCC-------CCCEEEEEEeCC--E-EEEE
Q 021744          181 SGQCAGVINLGGEVG--CMISEGPWIFIG-V-TNFVKAWNTQTNTDL-SLSGP-------VGQVYAMAVGND--L-LFAG  245 (308)
Q Consensus       181 ~~~~~~~~~~~~~v~--~~~~~~~~l~~~-~-d~~i~~wd~~~~~~~-~~~~~-------~~~v~~~~~~~~--~-l~~g  245 (308)
                      +++.+..+.......  .+.+++++++++ . ++.|++||+++++.. .+..+       ......++|+|+  + +++.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~  225 (300)
T TIGR03866       146 TYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL  225 (300)
T ss_pred             CCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence            888776655333333  346788887644 3 889999999998765 33211       112356889998  4 4445


Q ss_pred             cCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee--ceEEEEee
Q 021744          246 TQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV--SFIMFIGQ  299 (308)
Q Consensus       246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~--s~~i~~~~  299 (308)
                      ..++.|.+||+.+.    +.+..+. +...+.+ +|+|+|++|+++.  +..|.++.
T Consensus       226 ~~~~~i~v~d~~~~----~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d  277 (300)
T TIGR03866       226 GPANRVAVVDAKTY----EVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVID  277 (300)
T ss_pred             CCCCeEEEEECCCC----cEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence            56778999999875    4443332 3446777 9999999988643  44444444

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=6.6e-23  Score=161.52  Aligned_cols=218  Identities=13%  Similarity=0.185  Sum_probs=174.7

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCC--e-eeccCCCcEEEEECCCCCC
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTW--G-RNNNFNNHSNNYRAGNSKN   99 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~--~-~s~~~d~~i~vwd~~~~~~   99 (308)
                      .++++||||.|.+|++||..+.           .. ...+..|.+.  ++.|.+.-.  . ++|+.||.|.+|+...-+.
T Consensus        52 s~~~~aSGssDetI~IYDm~k~-----------~q-lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~  119 (362)
T KOG0294|consen   52 SGPYVASGSSDETIHIYDMRKR-----------KQ-LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWEL  119 (362)
T ss_pred             cceeEeccCCCCcEEEEeccch-----------hh-hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEE
Confidence            4789999999999999998876           22 2334566666  788887765  4 9999999999999976633


Q ss_pred             cccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEee-CcccceEEEEEeCCCCEEEEeeCCCcEEEE
Q 021744          100 SNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVRVW  177 (308)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~v~~w  177 (308)
                       ...+++|.+.|..++..|.+.. ++-+.|+.+++||+-+++ .-..+. .+..  +.+.|+|.|.+++.++.+ .|-+|
T Consensus       120 -~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr-~a~v~~L~~~a--t~v~w~~~Gd~F~v~~~~-~i~i~  194 (362)
T KOG0294|consen  120 -LKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR-VAFVLNLKNKA--TLVSWSPQGDHFVVSGRN-KIDIY  194 (362)
T ss_pred             -eeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc-cceeeccCCcc--eeeEEcCCCCEEEEEecc-EEEEE
Confidence             3467888888999999999987 888999999999998883 322222 2333  349999999998888875 49999


Q ss_pred             eCCCCeEEEEEeCCCeeEEE-EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC----EEEEEcCCCe
Q 021744          178 DCASGQCAGVINLGGEVGCM-ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND----LLFAGTQDGA  250 (308)
Q Consensus       178 d~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~----~l~~g~~dg~  250 (308)
                      .+.+......+..+..+.|+ +-++..|++|. ++.|.+||.....+. .+.+|+.+|.++.+-.+    +|++++.||.
T Consensus       195 q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~  274 (362)
T KOG0294|consen  195 QLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGF  274 (362)
T ss_pred             ecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCce
Confidence            99988777777766666665 56777888776 779999999987777 88999999999996433    9999999999


Q ss_pred             EEEEEcCCC
Q 021744          251 ILAWKFNVT  259 (308)
Q Consensus       251 i~iwd~~~~  259 (308)
                      |++||++..
T Consensus       275 I~vWd~~~~  283 (362)
T KOG0294|consen  275 IKVWDIDME  283 (362)
T ss_pred             EEEEEcccc
Confidence            999999875

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.91  E-value=2.8e-23  Score=163.43  Aligned_cols=200  Identities=16%  Similarity=0.219  Sum_probs=163.5

Q ss_pred             cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCC------------C-----ceeeeEeeCcccceEEEEEeCCCCEE
Q 021744          104 NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGD------------G-----FKLLTQLEGHQKVVSGITLPSGSDKL  165 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~------------~-----~~~~~~~~~h~~~v~~~~~~~~~~~l  165 (308)
                      ...|+...++.+|+++|.+ ++|+.|..|+|.|++.            +     ...++++..|.++|+++.|+|....|
T Consensus       108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL  187 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL  187 (430)
T ss_pred             EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence            3567777899999999987 8999999999999861            0     14578888999999999999999999


Q ss_pred             EEeeCCCcEEEEeCCCCe---EEEEEeCCCeeEEE--EcCCCEEEEEcCC-cEEEEEcCCCcee----eeeCCCCCEEEE
Q 021744          166 YSGSKDETVRVWDCASGQ---CAGVINLGGEVGCM--ISEGPWIFIGVTN-FVKAWNTQTNTDL----SLSGPVGQVYAM  235 (308)
Q Consensus       166 ~s~s~dg~v~~wd~~~~~---~~~~~~~~~~v~~~--~~~~~~l~~~~d~-~i~~wd~~~~~~~----~~~~~~~~v~~~  235 (308)
                      ++++.|++|+++|+....   ..+.++...++.++  .|.|.+|++|.|. ++++||+++.++.    .-.+|.+.|+++
T Consensus       188 iS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V  267 (430)
T KOG0640|consen  188 ISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQV  267 (430)
T ss_pred             EeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEE
Confidence            999999999999998643   33445566677776  4889999999965 9999999999887    245789999999


Q ss_pred             EEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecc-ccCC-CeEE-EEecCCCeEEEee-c--eEEEEeecCceeEEe
Q 021744          236 AVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK-VHTD-SNRA-HFSRDVTSLLGSV-S--FIMFIGQNNKGVVCY  307 (308)
Q Consensus       236 ~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~-~v~~-~~s~d~~~l~~s~-s--~~i~~~~~~~~~~~~  307 (308)
                      .+++.  +.++++.||.|++||--+.    +++.++. .|.+ .|++ .|+.+|+|+++|+ +  +.+|-...+.-++-|
T Consensus       268 ~Ys~t~~lYvTaSkDG~IklwDGVS~----rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y  343 (430)
T KOG0640|consen  268 RYSSTGSLYVTASKDGAIKLWDGVSN----RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY  343 (430)
T ss_pred             EecCCccEEEEeccCCcEEeeccccH----HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence            99998  8899999999999998876    8888886 4554 5666 9999999999888 4  444545556555544

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.5e-23  Score=179.25  Aligned_cols=218  Identities=16%  Similarity=0.203  Sum_probs=171.3

Q ss_pred             cCCCe-eeccCCCcEEEEECCCCCC-----cccccceeeeeeeeeeeecCC-ceEEeeCCCeEEEEEcCCCc-eeeeEee
Q 021744           76 NNTWG-RNNNFNNHSNNYRAGNSKN-----SNINNRAVIKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGF-KLLTQLE  147 (308)
Q Consensus        76 ~~g~~-~s~~~d~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~iwd~~~~~-~~~~~~~  147 (308)
                      |.+++ +||+.|++|++|++.....     -......|..-+..+.....+ ..++++.|-+|++|+..... -.+.++.
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir  114 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR  114 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence            56677 9999999999999953321     122344555556666666666 55999999999999997652 3567888


Q ss_pred             CcccceEEEEE-eCCCCEEEEeeCCCcEEEEeCCCC--eEEEEEe----------CCCeeEEEE--cCCCEEEEEc-CCc
Q 021744          148 GHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASG--QCAGVIN----------LGGEVGCMI--SEGPWIFIGV-TNF  211 (308)
Q Consensus       148 ~h~~~v~~~~~-~~~~~~l~s~s~dg~v~~wd~~~~--~~~~~~~----------~~~~v~~~~--~~~~~l~~~~-d~~  211 (308)
                      .|++-|.|+++ -++..+++||+-|+.|.+||++++  +.+..+.          +...+.++.  +.+..+++|+ .+.
T Consensus       115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~  194 (735)
T KOG0308|consen  115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD  194 (735)
T ss_pred             cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence            89999999999 778889999999999999999987  3343333          222344443  3455666766 899


Q ss_pred             EEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeE
Q 021744          212 VKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSL  287 (308)
Q Consensus       212 i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l  287 (308)
                      +++||.++.+.+ .+.+|...|..+..++|  .+++++.||+|++||+..+    +++.++..|...|++ ..+|+=+.+
T Consensus       195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ----rCl~T~~vH~e~VWaL~~~~sf~~v  270 (735)
T KOG0308|consen  195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ----RCLATYIVHKEGVWALQSSPSFTHV  270 (735)
T ss_pred             eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc----ceeeeEEeccCceEEEeeCCCcceE
Confidence            999999999877 89999999999999999  9999999999999999987    889999999999999 877776666


Q ss_pred             EEee-ceEEEE
Q 021744          288 LGSV-SFIMFI  297 (308)
Q Consensus       288 ~~s~-s~~i~~  297 (308)
                      .+++ +..|+.
T Consensus       271 YsG~rd~~i~~  281 (735)
T KOG0308|consen  271 YSGGRDGNIYR  281 (735)
T ss_pred             EecCCCCcEEe
Confidence            6554 555544

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.8e-22  Score=159.52  Aligned_cols=223  Identities=13%  Similarity=0.212  Sum_probs=176.1

Q ss_pred             CCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEc
Q 021744           61 PPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTV  136 (308)
Q Consensus        61 ~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~  136 (308)
                      ...+.||...  .++....... .+++.|.+-+||.++++..+. ...+|.+.+.++.|++.+.+ ++++.|++.+||..
T Consensus       141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~-~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~  219 (481)
T KOG0300|consen  141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA-TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA  219 (481)
T ss_pred             hhhhcccccceeeehhhcCCcceeecccccceeEEeecccccee-eecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence            3445677766  5555555567 999999999999999998763 45678889999999999977 89999999999972


Q ss_pred             ------CCC---------------------------------ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEE
Q 021744          137 ------GDG---------------------------------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW  177 (308)
Q Consensus       137 ------~~~---------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~w  177 (308)
                            ...                                 ..++..|.+|.+.|.+..|...++.+++++.|.+..+|
T Consensus       220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw  299 (481)
T KOG0300|consen  220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW  299 (481)
T ss_pred             hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence                  110                                 03455778999999999999999999999999999999


Q ss_pred             eCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCce-e-eeeCCCCCEEEEEEeCC-EEEEEcCCCe
Q 021744          178 DCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTD-L-SLSGPVGQVYAMAVGND-LLFAGTQDGA  250 (308)
Q Consensus       178 d~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~-~-~~~~~~~~v~~~~~~~~-~l~~g~~dg~  250 (308)
                      |+++++.+..+. |+.+.+-.  .|..+++++++ |.+.++||.+..-. + .+.+|.+.|+++.|..+ .+++|++|.+
T Consensus       300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrT  379 (481)
T KOG0300|consen  300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRT  379 (481)
T ss_pred             eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCce
Confidence            999999999888 66666644  45666667666 99999999984322 2 78999999999999998 9999999999


Q ss_pred             EEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE
Q 021744          251 ILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL  288 (308)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~  288 (308)
                      |++||+++..   .++.++... .+++- +.+..+..++
T Consensus       380 vKvWdLrNMR---splATIRtd-S~~NRvavs~g~~iIA  414 (481)
T KOG0300|consen  380 VKVWDLRNMR---SPLATIRTD-SPANRVAVSKGHPIIA  414 (481)
T ss_pred             EEEeeecccc---CcceeeecC-CccceeEeecCCceEE
Confidence            9999999864   566666543 33433 5555554444

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.91  E-value=9.1e-23  Score=175.61  Aligned_cols=233  Identities=17%  Similarity=0.198  Sum_probs=181.8

Q ss_pred             CCccccccc--eeEEecCCCeeeccCCCcEEEEECCCCCCccc-ccceeeeeeee-eeeec--CCceEEeeCCCeEEEEE
Q 021744           62 PAATANGAA--AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNI-NNRAVIKTDIL-CRNWV--QGNCMYGEKCKFLHSWT  135 (308)
Q Consensus        62 ~~~~gh~~~--~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~~g~~d~~i~iwd  135 (308)
                      ..+.||..-  .+++.+..-.+++|.|+++++|+-...+.+.. ....+...+.. +++.+  .++.++|+.|.+|.+|.
T Consensus         8 ~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~   87 (745)
T KOG0301|consen    8 HELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFK   87 (745)
T ss_pred             EEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEe
Confidence            345677655  45555555349999999999999876666542 33444444333 45543  34579999999999999


Q ss_pred             cCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCc
Q 021744          136 VGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNF  211 (308)
Q Consensus       136 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~  211 (308)
                      ..+. .++..|++|+..|.+++...++. ++|||.|.++++|-.  +++...++ |...+.++  .+++ .+++|+ |.+
T Consensus        88 ~~~~-~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKt  162 (745)
T KOG0301|consen   88 LSQA-EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKT  162 (745)
T ss_pred             cCCC-CchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcce
Confidence            9998 89999999999999999887776 999999999999965  45555566 88888877  3556 555554 999


Q ss_pred             EEEEEcCCCcee-eeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE
Q 021744          212 VKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL  288 (308)
Q Consensus       212 i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~  288 (308)
                      |++|.-  ++.. ++.+|.+.|+.+++.++ .|++++.||.|++|++..     +.+.++.+|...+.+ +...++..++
T Consensus       163 IklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~g-----e~l~~~~ghtn~vYsis~~~~~~~Iv  235 (745)
T KOG0301|consen  163 IKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDG-----EVLLEMHGHTNFVYSISMALSDGLIV  235 (745)
T ss_pred             eeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccC-----ceeeeeeccceEEEEEEecCCCCeEE
Confidence            999975  4444 89999999999999999 999999999999999954     889999999999999 8777777777


Q ss_pred             Eee-ceEEEEeecCceeEE
Q 021744          289 GSV-SFIMFIGQNNKGVVC  306 (308)
Q Consensus       289 ~s~-s~~i~~~~~~~~~~~  306 (308)
                      +++ +.++-+|.....+.+
T Consensus       236 s~gEDrtlriW~~~e~~q~  254 (745)
T KOG0301|consen  236 STGEDRTLRIWKKDECVQV  254 (745)
T ss_pred             EecCCceEEEeecCceEEE
Confidence            666 777777776654443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3.8e-22  Score=157.58  Aligned_cols=240  Identities=16%  Similarity=0.150  Sum_probs=170.5

Q ss_pred             CCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc---ccceeeeeeeeeeeecCCce--EEeeCCCeEEE
Q 021744           62 PAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI---NNRAVIKTDILCRNWVQGNC--MYGEKCKFLHS  133 (308)
Q Consensus        62 ~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~i  133 (308)
                      ..+.||...  +++|+.||++ ||++.|++||||++..-..-..   .....-.....+.|.|+...  +..-....+++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            456799988  9999999999 9999999999999964321100   00111123667889998754  44446678999


Q ss_pred             EEcCCCc--eee---------eEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe---CCCeeEEEEc
Q 021744          134 WTVGDGF--KLL---------TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN---LGGEVGCMIS  199 (308)
Q Consensus       134 wd~~~~~--~~~---------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~---~~~~v~~~~~  199 (308)
                      |-+....  ...         .--+.|+-.|..+-....+.+|++++.|..|.+|+++ |+.+..+.   ....-..++|
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP  238 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP  238 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence            9875321  000         0112366677777777788999999999999999999 99998887   2334456789


Q ss_pred             CCCEEEEEc-CCcEEEEEcC---CCc------eeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcc---cc
Q 021744          200 EGPWIFIGV-TNFVKAWNTQ---TNT------DLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNC---FE  264 (308)
Q Consensus       200 ~~~~l~~~~-d~~i~~wd~~---~~~------~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~---~~  264 (308)
                      +|++++++. .-.|++|..-   .++      ...+++|...|..++|+++  .+++.+.||+++|||.+-....   .+
T Consensus       239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk  318 (420)
T KOG2096|consen  239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK  318 (420)
T ss_pred             CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCch
Confidence            999999766 8899999863   222      2278999999999999999  9999999999999997632110   12


Q ss_pred             cceecc-----ccCCCeEEEEecCCCeEEEee--ceEEEEeecCc
Q 021744          265 PAASLK-----VHTDSNRAHFSRDVTSLLGSV--SFIMFIGQNNK  302 (308)
Q Consensus       265 ~~~~~~-----~~~~~v~~~~s~d~~~l~~s~--s~~i~~~~~~~  302 (308)
                      .+++..     ....+++...+|.|+.|+++.  ++.+|.....+
T Consensus       319 ~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~  363 (420)
T KOG2096|consen  319 ILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGK  363 (420)
T ss_pred             HhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCc
Confidence            222221     234567779999999999766  55555544433

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=2.7e-21  Score=161.18  Aligned_cols=256  Identities=14%  Similarity=0.170  Sum_probs=196.3

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc---eeEEecCCCeeeccCCCcEEEEECCCCCCcccc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA---AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~---~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      ++|++.+ .+.+..|+...+.      +...+   ..+.+++..   +++|.++|..+||.++|.|.||+..+.+...+.
T Consensus       214 nliit~G-k~H~~Fw~~~~~~------l~k~~---~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~  283 (626)
T KOG2106|consen  214 NLIITCG-KGHLYFWTLRGGS------LVKRQ---GIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQV  283 (626)
T ss_pred             cEEEEeC-CceEEEEEccCCc------eEEEe---eccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEe
Confidence            3455544 5789999877662      11111   122233333   899999999999999999999999776665555


Q ss_pred             cceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCc---------------------------------------eeee
Q 021744          104 NRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGF---------------------------------------KLLT  144 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~---------------------------------------~~~~  144 (308)
                      . .|.+.+.+++...+|.+++|+.|..|..||-.-.+                                       ....
T Consensus       284 ~-aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~  362 (626)
T KOG2106|consen  284 H-AHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL  362 (626)
T ss_pred             e-ecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE
Confidence            5 88888999999999999999999999999932100                                       0001


Q ss_pred             EeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCc
Q 021744          145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNT  221 (308)
Q Consensus       145 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~  221 (308)
                      ...+|.+..+.++.+|+.+++++++.|+.+++|+  ..+++.+...+.+..|+  .|.| .+++|. .|...+.|.++..
T Consensus       363 ~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~  439 (626)
T KOG2106|consen  363 TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD  439 (626)
T ss_pred             EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccce
Confidence            2246888999999999999999999999999999  66777777766666665  4667 888887 9999999999987


Q ss_pred             eeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE-eeceEEEE
Q 021744          222 DLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG-SVSFIMFI  297 (308)
Q Consensus       222 ~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~-s~s~~i~~  297 (308)
                      .+++.....+++++.|+|+  +||.|+.|+.|+||.+.........+..  -+..++.. .||+|++++.+ |.+..|..
T Consensus       440 lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k--~~gs~ithLDwS~Ds~~~~~~S~d~eiLy  517 (626)
T KOG2106|consen  440 LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK--CSGSPITHLDWSSDSQFLVSNSGDYEILY  517 (626)
T ss_pred             eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee--ecCceeEEeeecCCCceEEeccCceEEEE
Confidence            7766555889999999999  9999999999999999876532222223  34488998 99999999994 55777666


Q ss_pred             e
Q 021744          298 G  298 (308)
Q Consensus       298 ~  298 (308)
                      |
T Consensus       518 W  518 (626)
T KOG2106|consen  518 W  518 (626)
T ss_pred             E
Confidence            6

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.5e-22  Score=165.74  Aligned_cols=242  Identities=17%  Similarity=0.232  Sum_probs=190.5

Q ss_pred             CceEEecC-CCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744           27 GLSTADTR-QKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN  104 (308)
Q Consensus        27 ~~~~s~s~-d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~  104 (308)
                      .+++++.. ...+.+|...++.++.     .....|.|.     .+++-+|+|.+ +.|+..+.|.+|.+.+|..+... 
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~-----q~~v~Pg~v-----~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-  119 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVV-----QYIVLPGPV-----HALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-  119 (476)
T ss_pred             hheeeecccCccccccccCchhhhh-----hhcccccce-----eeeecCCCceEEEeecccCcEEEEEeccccHHHHH-
Confidence            35555554 4578889888763222     111112211     16888999999 66669999999999999877544 


Q ss_pred             ceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCC--------ceeeeEeeCcccceEEEEEeCC--CCEEEEeeCCCc
Q 021744          105 RAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDG--------FKLLTQLEGHQKVVSGITLPSG--SDKLYSGSKDET  173 (308)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~--------~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~dg~  173 (308)
                      ..|=..+.++.|+.++.. ++|+.||.|.+|++.+-        .++++.+..|+-+|+++...+.  ...++|+|.|.+
T Consensus       120 ~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t  199 (476)
T KOG0646|consen  120 SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRT  199 (476)
T ss_pred             HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCce
Confidence            667777999999999977 99999999999997421        2678889999999999998765  367999999999


Q ss_pred             EEEEeCCCCeEEEEEeCCCeeEEEE--cCCCEEEEEc-CCcEEEEEcCCCc-----------------eeeeeCCCC--C
Q 021744          174 VRVWDCASGQCAGVINLGGEVGCMI--SEGPWIFIGV-TNFVKAWNTQTNT-----------------DLSLSGPVG--Q  231 (308)
Q Consensus       174 v~~wd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~~wd~~~~~-----------------~~~~~~~~~--~  231 (308)
                      +++||+..+..+.++..+..+.++.  |.++.+++|. +|.|.+.++.+..                 ...+.+|.+  +
T Consensus       200 ~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~  279 (476)
T KOG0646|consen  200 IKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESA  279 (476)
T ss_pred             EEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcc
Confidence            9999999999999999888888774  6678888887 9998887764322                 125678888  9


Q ss_pred             EEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecC
Q 021744          232 VYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRD  283 (308)
Q Consensus       232 v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d  283 (308)
                      |+|++++-|  +|++|+.||.|.|||+.+.    ++++++....++|+- .+.|-
T Consensus       280 ITcLais~DgtlLlSGd~dg~VcvWdi~S~----Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  280 ITCLAISTDGTLLLSGDEDGKVCVWDIYSK----QCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             eeEEEEecCccEEEeeCCCCCEEEEecchH----HHHHHHhhhccccceeEeecc
Confidence            999999999  9999999999999999996    888888766677776 77554

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=7.4e-23  Score=163.99  Aligned_cols=251  Identities=8%  Similarity=0.060  Sum_probs=178.5

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCeeeccCCCcEEEEECCCCCCccccc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINN  104 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~  104 (308)
                      +.+|||+.||.|++||....            .....+..|.+.  .|++.. +..++++.|++|+.|.++.. ++.  .
T Consensus        80 s~~aSGs~DG~VkiWnlsqR------------~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~-p~~--t  143 (433)
T KOG0268|consen   80 STVASGSCDGEVKIWNLSQR------------ECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP-PLH--T  143 (433)
T ss_pred             hhhhccccCceEEEEehhhh------------hhhheeecccCceeeEEecc-cceEEecCCcceeeeeccCC-cce--e
Confidence            67999999999999998764            233445667766  677766 33399999999999998642 111  0


Q ss_pred             ceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCCe
Q 021744          105 RAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQ  183 (308)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~~  183 (308)
                      ...+..+..+.-.-. ..+.+.....|.|||.... .++.++.-..+.|.++.|+|.. ..|++|..|+.|.+||+++++
T Consensus       144 ilg~s~~~gIdh~~~-~~~FaTcGe~i~IWD~~R~-~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~  221 (433)
T KOG0268|consen  144 ILGKSVYLGIDHHRK-NSVFATCGEQIDIWDEQRD-NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQAS  221 (433)
T ss_pred             eeccccccccccccc-cccccccCceeeecccccC-CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCC
Confidence            111111111111111 1123334457999999877 7888888888999999999965 567888899999999999999


Q ss_pred             EEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee--eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEc
Q 021744          184 CAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF  256 (308)
Q Consensus       184 ~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~--~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~  256 (308)
                      ++...........+  .|+.-.++++. |..++.||++..+..  ...+|.+.|.+++|+|.  -|++||.|.+|+||..
T Consensus       222 Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~  301 (433)
T KOG0268|consen  222 PLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPV  301 (433)
T ss_pred             ccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeec
Confidence            99887754444433  46333444565 889999999986544  78899999999999999  8999999999999999


Q ss_pred             CCCCcccccceeccccCCCeEE-EEecCCCeEEEee---ceEEEEe
Q 021744          257 NVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV---SFIMFIG  298 (308)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~---s~~i~~~  298 (308)
                      +.+..  +.+..-+. -..|.+ .||.|.+|+++++   .+.+|..
T Consensus       302 ~~~~S--RdiYhtkR-Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  302 NHGHS--RDIYHTKR-MQHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             CCCcc--hhhhhHhh-hheeeEEEEeccccEEEecCCCcceeeeec
Confidence            87632  22221111 235666 9999999999666   4444443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=4e-21  Score=170.30  Aligned_cols=242  Identities=14%  Similarity=0.138  Sum_probs=188.6

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN  104 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~  104 (308)
                      |..|.+++.|+.||+|+....           ...|....-+.....++.-.+.+ ++++.+++|.+|.+..++.- ..+
T Consensus        25 gefi~tcgsdg~ir~~~~~sd-----------~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~-~iL   92 (933)
T KOG1274|consen   25 GEFICTCGSDGDIRKWKTNSD-----------EEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED-TIL   92 (933)
T ss_pred             CCEEEEecCCCceEEeecCCc-----------ccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc-cee
Confidence            448999999999999997654           12222222133334566666668 99999999999999766543 234


Q ss_pred             ceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCe
Q 021744          105 RAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ  183 (308)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~  183 (308)
                      ..+..++..++++.+|.. +.|+.|-.|++-++.+. .....+++|+++|.++.|+|++++||+.+-||+|++||+.++.
T Consensus        93 ~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~-s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~  171 (933)
T KOG1274|consen   93 ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS-SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI  171 (933)
T ss_pred             eeeeccceEEEEecCCcEEEeecCceeEEEEecccc-chheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccch
Confidence            556667899999999977 88899999999999988 7888999999999999999999999999999999999999988


Q ss_pred             EEEEEeC-------C-CeeE---EEEcC-CCEEEEEcCCcEEEEEcCCCcee-ee--eCCCCCEEEEEEeCC--EEEEEc
Q 021744          184 CAGVINL-------G-GEVG---CMISE-GPWIFIGVTNFVKAWNTQTNTDL-SL--SGPVGQVYAMAVGND--LLFAGT  246 (308)
Q Consensus       184 ~~~~~~~-------~-~~v~---~~~~~-~~~l~~~~d~~i~~wd~~~~~~~-~~--~~~~~~v~~~~~~~~--~l~~g~  246 (308)
                      +..++..       . ..+.   .+.|+ +++++.+.|+.|++|+..+.+.+ .+  +.+...+..+.|+|.  |||+++
T Consensus       172 ~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~  251 (933)
T KOG1274|consen  172 LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAST  251 (933)
T ss_pred             hhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeec
Confidence            8777651       1 1222   12466 56666788999999999998876 33  344555999999999  999999


Q ss_pred             CCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE
Q 021744          247 QDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL  288 (308)
Q Consensus       247 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~  288 (308)
                      .||.|.|||..+-    ..    +.....|++ +|.|+..-+.
T Consensus       252 ~~g~I~vWnv~t~----~~----~~~~~~Vc~~aw~p~~n~it  286 (933)
T KOG1274|consen  252 LDGQILVWNVDTH----ER----HEFKRAVCCEAWKPNANAIT  286 (933)
T ss_pred             cCCcEEEEecccc----hh----ccccceeEEEecCCCCCeeE
Confidence            9999999999972    11    334567888 9999876554

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.1e-20  Score=160.75  Aligned_cols=260  Identities=16%  Similarity=0.190  Sum_probs=194.3

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc---eeEEecCCCeeeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA---AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~---~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      .+.+|.+-.|+.|.+|+.... .+..+.+          .|+++.   .++|++.+++++.+.+|+|.-||+.+.++.. 
T Consensus        37 S~~lAvsRt~g~IEiwN~~~~-w~~~~vi----------~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~-  104 (691)
T KOG2048|consen   37 SNQLAVSRTDGNIEIWNLSNN-WFLEPVI----------HGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKY-  104 (691)
T ss_pred             CCceeeeccCCcEEEEccCCC-ceeeEEE----------ecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeE-
Confidence            445889999999999998874 2222222          233333   6999977777999999999999998876652 


Q ss_pred             ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCc-eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744          103 NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA  180 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~  180 (308)
                      ........++.++.+|.+.. +.|++||.+..++...+. +..+.|.-.++.|.+++|+|++..+++|+.||.|++||..
T Consensus       105 ~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~  184 (691)
T KOG2048|consen  105 NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK  184 (691)
T ss_pred             EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence            22334455899999998866 788899988888888772 2233444567999999999999999999999999999999


Q ss_pred             CCeEEEEEe------CC-Ce--eEEE-EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEc
Q 021744          181 SGQCAGVIN------LG-GE--VGCM-ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGT  246 (308)
Q Consensus       181 ~~~~~~~~~------~~-~~--v~~~-~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~  246 (308)
                      +++.+....      .. .+  +.++ +-....|++|. .|+|++||...+.+. .+..|...|.+++..++  ++++++
T Consensus       185 ~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG  264 (691)
T KOG2048|consen  185 SGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG  264 (691)
T ss_pred             CCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc
Confidence            988777332      11 11  2233 33556677776 899999999999888 78889999999999988  999999


Q ss_pred             CCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          247 QDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       247 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      .|+.|..|...+....+........|...+++ +..++  .+++++ +..+++..
T Consensus       265 vd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~  317 (691)
T KOG2048|consen  265 VDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICS  317 (691)
T ss_pred             CCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcc
Confidence            99999999988765433344445578888888 77666  444333 66666544

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=6.2e-21  Score=156.63  Aligned_cols=237  Identities=14%  Similarity=0.174  Sum_probs=176.9

Q ss_pred             CCCCCCCceEEecCCCeEEEeecCCCCC-CCCCccccc--------CCCCCCccccccc--eeEEecCCCe--eeccCCC
Q 021744           21 GDGGGGGLSTADTRQKVCNYWRAGKCNR-FPCPYLHRE--------LPLPPAATANGAA--AKRFANNTWG--RNNNFNN   87 (308)
Q Consensus        21 ~~~~~~~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~--------~~~~~~~~gh~~~--~i~~s~~g~~--~s~~~d~   87 (308)
                      .....|+++|-|+-|..|.|||..--+. .||-.|-.-        ........+|+.+  .++++..-..  ||||.|+
T Consensus       187 ~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~  266 (463)
T KOG0270|consen  187 KSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK  266 (463)
T ss_pred             CCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc
Confidence            3445688999999999999999875543 444433310        0111223478877  6777766554  9999999


Q ss_pred             cEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCC-CE
Q 021744           88 HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS-DK  164 (308)
Q Consensus        88 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~  164 (308)
                      ||++||++++++.. ....|.+.|.++.|++....  ++|+.|++|.+.|.+.....-..++ -.+.|-.++|+|.. ..
T Consensus       267 TV~lWD~~~g~p~~-s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~  344 (463)
T KOG0270|consen  267 TVKLWDVDTGKPKS-SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENS  344 (463)
T ss_pred             eEEEEEcCCCCcce-ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCcee
Confidence            99999999998763 33467778999999998733  8999999999999985422222222 45788999999865 55


Q ss_pred             EEEeeCCCcEEEEeCCC-CeEEEEEe-CCCeeEEEEcC---CCEEEEEc-CCcEEEEEcCCCceeeeeCCC---CCEEEE
Q 021744          165 LYSGSKDETVRVWDCAS-GQCAGVIN-LGGEVGCMISE---GPWIFIGV-TNFVKAWNTQTNTDLSLSGPV---GQVYAM  235 (308)
Q Consensus       165 l~s~s~dg~v~~wd~~~-~~~~~~~~-~~~~v~~~~~~---~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~---~~v~~~  235 (308)
                      ++++..||+|+-+|++. ++++.+++ |..+|.+++.+   ..++++++ ++.+++|++..........|.   +...|+
T Consensus       345 f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~  424 (463)
T KOG0270|consen  345 FFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCF  424 (463)
T ss_pred             EEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeec
Confidence            78888999999999997 58999988 88999988533   34566555 999999998866554333332   346788


Q ss_pred             EEeCC---EEEEEcCCCeEEEEEcCCC
Q 021744          236 AVGND---LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       236 ~~~~~---~l~~g~~dg~i~iwd~~~~  259 (308)
                      ++.|+   +++.|+..+.+++||+.+.
T Consensus       425 ~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  425 ALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             ccCCCcceEEEecCccceEEEeecccC
Confidence            88888   8899999999999999886

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=5.7e-20  Score=139.00  Aligned_cols=224  Identities=15%  Similarity=0.137  Sum_probs=174.5

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCC----------C-CC---cccccceeeeeeeeeeeecCCce-EEeeCCCeEEEE
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGN----------S-KN---SNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSW  134 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~----------~-~~---~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iw  134 (308)
                      +++|+|.|.. +.|+..+++||-....          . ++   +....+.|+..+.+.+|+|.|.. ++|+.|++|++.
T Consensus        37 av~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l  116 (350)
T KOG0641|consen   37 AVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVL  116 (350)
T ss_pred             eEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEE
Confidence            7999999999 9999999999975421          1 11   11123556677999999999977 899999999996


Q ss_pred             EcCCCc----eeeeEeeCcccceEEEEEeCC----CCEEEEeeC-CCcEEEEeCCCCeEEEEEe-CCCeeEEEE-cCCCE
Q 021744          135 TVGDGF----KLLTQLEGHQKVVSGITLPSG----SDKLYSGSK-DETVRVWDCASGQCAGVIN-LGGEVGCMI-SEGPW  203 (308)
Q Consensus       135 d~~~~~----~~~~~~~~h~~~v~~~~~~~~----~~~l~s~s~-dg~v~~wd~~~~~~~~~~~-~~~~v~~~~-~~~~~  203 (308)
                      -.+...    -.-.++.-|.+.|..++|-.+    +..|++++. |-.|++-|-.+++....+. |.+.+.++. -++-.
T Consensus       117 ~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m  196 (350)
T KOG0641|consen  117 PFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAM  196 (350)
T ss_pred             ecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcE
Confidence            654321    123456679999999999643    356666654 6677788888999988887 788888874 56777


Q ss_pred             EEEEc-CCcEEEEEcCCCcee-eee--CC-----CCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecccc
Q 021744          204 IFIGV-TNFVKAWNTQTNTDL-SLS--GP-----VGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH  272 (308)
Q Consensus       204 l~~~~-d~~i~~wd~~~~~~~-~~~--~~-----~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  272 (308)
                      +++|+ |.+|++||++-..++ ++.  -|     .+.|.+++..|.  +|++|..|....+||++.+    ++++.+..|
T Consensus       197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~----r~iq~f~ph  272 (350)
T KOG0641|consen  197 FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG----RMIQRFHPH  272 (350)
T ss_pred             EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC----ceeeeeCCC
Confidence            77888 999999999988776 222  11     357999999999  8999999999999999998    899999999


Q ss_pred             CCCeEE-EEecCCCeEEEee-ceEEEEe
Q 021744          273 TDSNRA-HFSRDVTSLLGSV-SFIMFIG  298 (308)
Q Consensus       273 ~~~v~~-~~s~d~~~l~~s~-s~~i~~~  298 (308)
                      ...|++ .|||..-||+++. +..|.+.
T Consensus       273 sadir~vrfsp~a~yllt~syd~~iklt  300 (350)
T KOG0641|consen  273 SADIRCVRFSPGAHYLLTCSYDMKIKLT  300 (350)
T ss_pred             ccceeEEEeCCCceEEEEecccceEEEe
Confidence            999999 9999998888544 5555443

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.88  E-value=9.4e-21  Score=156.15  Aligned_cols=278  Identities=12%  Similarity=0.095  Sum_probs=194.8

Q ss_pred             eEEEeecCCCCCCCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe--eeccCC
Q 021744           11 RVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG--RNNNFN   86 (308)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~--~s~~~d   86 (308)
                      |+|.-.-++   ...-.++|+|..-|+|=+||.+...++        .+.......|...  ++.|+|....  .+.|+|
T Consensus       188 Rit~l~fHP---t~~~~lva~GdK~G~VG~Wn~~~~~~d--------~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD  256 (498)
T KOG4328|consen  188 RITSLAFHP---TENRKLVAVGDKGGQVGLWNFGTQEKD--------KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD  256 (498)
T ss_pred             ceEEEEecc---cCcceEEEEccCCCcEEEEecCCCCCc--------cCceEEeccCCccccceEecCCChhheeeeccC
Confidence            555555666   445578999999999999999643110        1222223355555  8999998765  899999


Q ss_pred             CcEEEEECCCCCCccccc-ceeeeeeeeeeeecCCc-eEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCC-C
Q 021744           87 NHSNNYRAGNSKNSNINN-RAVIKTDILCRNWVQGN-CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS-D  163 (308)
Q Consensus        87 ~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-~  163 (308)
                      |+||+=|++......... .........+.|+.... .+++..=|...+||.++.......+.-|+..|.+++++|.. .
T Consensus       257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~  336 (498)
T KOG4328|consen  257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW  336 (498)
T ss_pred             ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence            999999998664321111 11122245566666554 47788888999999998855566777899999999999965 5


Q ss_pred             EEEEeeCCCcEEEEeCCCCe-----EEEEEeCCCeeEEE--EcCCCEEE-EEcCCcEEEEEcC----CCceeeeeCCCC-
Q 021744          164 KLYSGSKDETVRVWDCASGQ-----CAGVINLGGEVGCM--ISEGPWIF-IGVTNFVKAWNTQ----TNTDLSLSGPVG-  230 (308)
Q Consensus       164 ~l~s~s~dg~v~~wd~~~~~-----~~~~~~~~~~v~~~--~~~~~~l~-~~~d~~i~~wd~~----~~~~~~~~~~~~-  230 (308)
                      +|+|+|.|++++|||++.-.     .+..+.|...|.+.  +|.+-.|+ ++.|+.|+|||..    ..++.....|.. 
T Consensus       337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~  416 (498)
T KOG4328|consen  337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNR  416 (498)
T ss_pred             heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCc
Confidence            68999999999999998632     25556677777765  46544455 5569999999984    333332223332 


Q ss_pred             -----CEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecccc-CCCeEE--EEecCCCeEE-Eee-ceEEEEe
Q 021744          231 -----QVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH-TDSNRA--HFSRDVTSLL-GSV-SFIMFIG  298 (308)
Q Consensus       231 -----~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~--~~s~d~~~l~-~s~-s~~i~~~  298 (308)
                           ......|.|+  ++++|-.-..|-|+|-..+    +.+.++... ...|.+  .|+|-+..++ ++. ++.||++
T Consensus       417 t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~----q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf  492 (498)
T KOG4328|consen  417 TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG----QMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF  492 (498)
T ss_pred             ccccccchhheeCCCccEEEEeccCcceeEEcCCCC----EEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence                 3456779999  8999999999999999887    666776543 335666  9999887455 433 8888988


Q ss_pred             ecCce
Q 021744          299 QNNKG  303 (308)
Q Consensus       299 ~~~~~  303 (308)
                      .+.++
T Consensus       493 t~k~~  497 (498)
T KOG4328|consen  493 TNKKS  497 (498)
T ss_pred             ecCCC
Confidence            77653

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=1.7e-22  Score=174.69  Aligned_cols=211  Identities=17%  Similarity=0.228  Sum_probs=176.5

Q ss_pred             CCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCc
Q 021744           24 GGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        24 ~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~  100 (308)
                      .....+++|+.|..+-+|....-           .+.. .+.+|+..  ++.|+++... +.|+.+|+|++||++.++..
T Consensus        38 ~s~r~~~~Gg~~~k~~L~~i~kp-----------~~i~-S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v  105 (825)
T KOG0267|consen   38 KSSRSLVTGGEDEKVNLWAIGKP-----------NAIT-SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV  105 (825)
T ss_pred             ccceeeccCCCceeeccccccCC-----------chhh-eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh
Confidence            44577899999999999987754           2222 26788888  9999999999 99999999999999877655


Q ss_pred             ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744          101 NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC  179 (308)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~  179 (308)
                      . .+.+|...+..+.|+|-+.+ +.|+.|..+.+||.+.. -+.+.+.+|...|..+.|+|+|+++++++.|.++++||+
T Consensus       106 r-tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~  183 (825)
T KOG0267|consen  106 R-TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDL  183 (825)
T ss_pred             h-hhhccccCcceeeeccceEEeccccccccceehhhhcc-CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecc
Confidence            3 55677777888889999977 88999999999999966 689999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEe-CCCeeEEE-EcC-CCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCC
Q 021744          180 ASGQCAGVIN-LGGEVGCM-ISE-GPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQD  248 (308)
Q Consensus       180 ~~~~~~~~~~-~~~~v~~~-~~~-~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~d  248 (308)
                      ..|+.+..|+ |+..+..+ ..+ +-+++.|+ |+++++||+++.+.+ ........|.+..|+|+  .+++|..+
T Consensus       184 ~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  184 TAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             cccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence            9999999999 77777766 334 44555666 999999999999888 56666788999999999  55555543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.5e-20  Score=155.37  Aligned_cols=260  Identities=14%  Similarity=0.142  Sum_probs=185.7

Q ss_pred             ceEEecCCC-eEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCC-CcEEEEECCCCCCccccc
Q 021744           28 LSTADTRQK-VCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFN-NHSNNYRAGNSKNSNINN  104 (308)
Q Consensus        28 ~~~s~s~d~-~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d-~~i~vwd~~~~~~~~~~~  104 (308)
                      .+.+++.|. ++++||..++..     +.. .....+..+|.-  -+..+  .+ +++... ..|.+|.+...+... ..
T Consensus         9 ~~sssS~d~~~~~~~dl~TGt~-----~~~-ykg~~~a~~~sl--~~l~~--~yllsaq~~rp~l~vw~i~k~~~~~-q~   77 (476)
T KOG0646|consen    9 VCSSSSFDPINCIVWDLRTGTS-----LLQ-YKGSYLAQAASL--TALNN--EYLLSAQLKRPLLHVWEILKKDQVV-QY   77 (476)
T ss_pred             EEeccCCCCcceeEEecCCCce-----eEE-ecCcccccchhh--hhhch--hheeeecccCccccccccCchhhhh-hh
Confidence            344455565 599999998821     000 000001111211  12222  45 444433 468999996554442 23


Q ss_pred             ceeeeeeeeeeeecCCceEEee-CCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC--
Q 021744          105 RAVIKTDILCRNWVQGNCMYGE-KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS--  181 (308)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~g~-~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~--  181 (308)
                      ....+.+.++.-+|.|.++.++ ..+.|++|.+.++ ..+..+.+|-..|+++.|+-|+.+++||+.||.|.+|.+-+  
T Consensus        78 ~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG-~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv  156 (476)
T KOG0646|consen   78 IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSG-ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV  156 (476)
T ss_pred             cccccceeeeecCCCceEEEeecccCcEEEEEeccc-cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec
Confidence            3344558888999999996666 9999999999999 88888999999999999999999999999999999997642  


Q ss_pred             -------CeEEEEEe-CCCeeEEEE-c---CCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEc
Q 021744          182 -------GQCAGVIN-LGGEVGCMI-S---EGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT  246 (308)
Q Consensus       182 -------~~~~~~~~-~~~~v~~~~-~---~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~  246 (308)
                             -+++..+. |.-+++.+. .   ...++++.+ |.++++||+..+..+.-...+..+.+++++|.  .+..|+
T Consensus       157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt  236 (476)
T KOG0646|consen  157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT  236 (476)
T ss_pred             ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC
Confidence                   34566666 666777773 2   234566554 99999999999998854556778999999998  899999


Q ss_pred             CCCeEEEEEcCCCCc------------ccccceeccccCC--CeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          247 QDGAILAWKFNVTTN------------CFEPAASLKVHTD--SNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       247 ~dg~i~iwd~~~~~~------------~~~~~~~~~~~~~--~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      .+|.|.+.++..-..            ....+..+.+|.+  .|+| +.+-||.+|+++. +..+.+|.
T Consensus       237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd  305 (476)
T KOG0646|consen  237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD  305 (476)
T ss_pred             CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence            999999998765431            1133455668888  9999 9999999998554 66665554

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=3.1e-20  Score=153.28  Aligned_cols=252  Identities=15%  Similarity=0.158  Sum_probs=189.6

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCC-e-eeccCCCcEEEEECCCCCCcccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTW-G-RNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~-~-~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      -.++.+++.|++++++.++.- +++  .++.-.-...|++     +.+|+|+|. . ++++.-.-+..||+.+++.....
T Consensus       225 ~plllvaG~d~~lrifqvDGk-~N~--~lqS~~l~~fPi~-----~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~  296 (514)
T KOG2055|consen  225 APLLLVAGLDGTLRIFQVDGK-VNP--KLQSIHLEKFPIQ-----KAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK  296 (514)
T ss_pred             CceEEEecCCCcEEEEEecCc-cCh--hheeeeeccCccc-----eeeecCCCceEEEecccceEEEEeecccccccccc
Confidence            468999999999999998753 111  1211111111111     579999999 4 88999999999999887644322


Q ss_pred             -cceee-eeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744          104 -NRAVI-KTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA  180 (308)
Q Consensus       104 -~~~~~-~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~  180 (308)
                       ..+++ ..+.....++++.+ +..+..|.|.+....++ +.+.+++ -.+.|..++|+.+++.|+.++.+|.|.+||++
T Consensus       297 ~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~-eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~  374 (514)
T KOG2055|consen  297 PPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK-ELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLR  374 (514)
T ss_pred             CCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh-hhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecC
Confidence             22333 33666677888877 88999999999999999 7888887 67899999999999999999999999999999


Q ss_pred             CCeEEEEEeCCCee----EEEEcCCCEEEEEc-CCcEEEEEcCCC------cee-eeeCCCCCEEEEEEeCC--EEEEEc
Q 021744          181 SGQCAGVINLGGEV----GCMISEGPWIFIGV-TNFVKAWNTQTN------TDL-SLSGPVGQVYAMAVGND--LLFAGT  246 (308)
Q Consensus       181 ~~~~~~~~~~~~~v----~~~~~~~~~l~~~~-d~~i~~wd~~~~------~~~-~~~~~~~~v~~~~~~~~--~l~~g~  246 (308)
                      ...++..+..++.+    .|.+.++.++|+|+ .|.|.|||..+.      +++ .+..-...|++|.|+++  +||.+|
T Consensus       375 ~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS  454 (514)
T KOG2055|consen  375 QNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIAS  454 (514)
T ss_pred             CcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhh
Confidence            99999999855443    35568899999999 789999996543      222 55566778999999999  666666


Q ss_pred             C--CCeEEEEEcCCCCcccccceecc---ccCCCeEE-EEecCCCeEEEee
Q 021744          247 Q--DGAILAWKFNVTTNCFEPAASLK---VHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       247 ~--dg~i~iwd~~~~~~~~~~~~~~~---~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      .  +..+++-.+.+.+    ...-+.   ..-+.++| +|||.+.+|+.+.
T Consensus       455 ~~~knalrLVHvPS~T----VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN  501 (514)
T KOG2055|consen  455 RVKKNALRLVHVPSCT----VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN  501 (514)
T ss_pred             hccccceEEEecccee----eeccCCCCCCcccceEEEEecCCCceEEeec
Confidence            4  6789999998852    222232   34456888 9999999998654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=6.4e-20  Score=145.10  Aligned_cols=267  Identities=10%  Similarity=0.092  Sum_probs=180.3

Q ss_pred             CCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe--eeccCCCcEEEEECCCCCCc
Q 021744           23 GGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG--RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        23 ~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~  100 (308)
                      +..|-.+||++.|++||+|+.........+++....+..     |.. .++|+||-+.  ++.-...++++|.+...+-.
T Consensus        95 sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-----hpT-~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG  168 (420)
T KOG2096|consen   95 SSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD-----HPT-RVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDG  168 (420)
T ss_pred             cCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC-----Cce-EEEECCCcceEEEEEccCCEEEEEEeeecccC
Confidence            444778999999999999998765222223333333222     322 4999999887  67778889999988433211


Q ss_pred             cc-----cc------ceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEe
Q 021744          101 NI-----NN------RAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG  168 (308)
Q Consensus       101 ~~-----~~------~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  168 (308)
                      ..     ..      .-|...+.....-..+.+ ++++.|..|.+|+++ + +.+..+......-+..+++|+|++++++
T Consensus       169 ~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G-q~L~~idtnq~~n~~aavSP~GRFia~~  246 (420)
T KOG2096|consen  169 SGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G-QLLQSIDTNQSSNYDAAVSPDGRFIAVS  246 (420)
T ss_pred             CCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C-ceeeeeccccccccceeeCCCCcEEEEe
Confidence            10     11      111222333333333344 889999999999998 6 6788887777778889999999999999


Q ss_pred             eCCCcEEEEeCC---CC---eEEE--EEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCc-----eeee------
Q 021744          169 SKDETVRVWDCA---SG---QCAG--VIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNT-----DLSL------  225 (308)
Q Consensus       169 s~dg~v~~wd~~---~~---~~~~--~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~-----~~~~------  225 (308)
                      +----|++|.+-   .|   +..+  .++ |...+..+  +++.+.+++.+ ||++++||+.-.-     +..+      
T Consensus       247 gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~p  326 (420)
T KOG2096|consen  247 GFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAP  326 (420)
T ss_pred             cCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcc
Confidence            999999999763   22   1222  233 55555544  46666777555 9999999986321     1111      


Q ss_pred             -eCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceecc-ccCCCeEE-EEecCCCeEEEeeceEEEEeecC
Q 021744          226 -SGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLK-VHTDSNRA-HFSRDVTSLLGSVSFIMFIGQNN  301 (308)
Q Consensus       226 -~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~-~~s~d~~~l~~s~s~~i~~~~~~  301 (308)
                       ....+....++++|+ .+++.+....+++|..+.+    +...+++ .|...|.+ +|+++|+++++.++..+-+..|.
T Consensus       327 l~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g----~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~nt  402 (420)
T KOG2096|consen  327 LHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDG----KDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVIRNT  402 (420)
T ss_pred             hhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccC----ccchhHHHhhcCceeeEEecCCCcEEeeecceeeeeecCC
Confidence             112234457999999 4444455568999999987    4445554 68999999 99999999999997776666543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1.9e-21  Score=169.38  Aligned_cols=214  Identities=13%  Similarity=0.205  Sum_probs=170.7

Q ss_pred             eeEEec-CCCe-eeccCCCcEEEEECCC--CCCcccccceeeeeeeeeeeecCCc--eEEeeCCCeEEEEEcCCCceeee
Q 021744           71 AKRFAN-NTWG-RNNNFNNHSNNYRAGN--SKNSNINNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLT  144 (308)
Q Consensus        71 ~i~~s~-~g~~-~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~iwd~~~~~~~~~  144 (308)
                      .+.|+. ..++ |+++..|.|.+||+..  .+........|+..+..+.|++...  .++|+.||.|++||++.. +...
T Consensus        92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~-~S~~  170 (839)
T KOG0269|consen   92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK-KSKS  170 (839)
T ss_pred             hcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc-cccc
Confidence            566663 3445 9999999999999975  2233334567888899999988773  399999999999999988 6788


Q ss_pred             EeeCcccceEEEEEeC-CCCEEEEeeCCCcEEEEeCCC-CeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcC
Q 021744          145 QLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCAS-GQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQ  218 (308)
Q Consensus       145 ~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~v~~wd~~~-~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~  218 (308)
                      ++.+....|+.+.|+| .+.+++++...|.+++||++. .++...+. |.+++.|+  .|++.+||+|+ |+.|+|||..
T Consensus       171 t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t  250 (839)
T KOG0269|consen  171 TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT  250 (839)
T ss_pred             cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEecc
Confidence            8888999999999998 467899999999999999996 34555555 89999988  48888999988 9999999998


Q ss_pred             CCcee--eeeCCCCCEEEEEEeCC---EEEEEcC--CCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE
Q 021744          219 TNTDL--SLSGPVGQVYAMAVGND---LLFAGTQ--DGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL  288 (308)
Q Consensus       219 ~~~~~--~~~~~~~~v~~~~~~~~---~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~  288 (308)
                      +.+..  .......+|..+.|-|+   .|++++.  |-.|+|||++-+   +-+..++..|...++. +|......++
T Consensus       251 ~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP---YIP~~t~~eH~~~vt~i~W~~~d~~~l  325 (839)
T KOG0269|consen  251 DSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP---YIPYATFLEHTDSVTGIAWDSGDRINL  325 (839)
T ss_pred             CCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc---cccceeeeccCccccceeccCCCceee
Confidence            76554  22234568999999998   6777764  778999999987   4677888999999988 8866333333

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.87  E-value=9.5e-20  Score=142.72  Aligned_cols=265  Identities=14%  Similarity=0.216  Sum_probs=177.5

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcc---cccCCCCCCccccccc---eeEEecCCCe-eeccCCCcEEEEECCCCC
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYL---HRELPLPPAATANGAA---AKRFANNTWG-RNNNFNNHSNNYRAGNSK   98 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~---~~~~~~~~~~~gh~~~---~i~~s~~g~~-~s~~~d~~i~vwd~~~~~   98 (308)
                      +.+.++|+.|+.|-|||.++-.-.....+   |.-........+|.-.   .++|--|... .+++.|.+++|||.++.|
T Consensus        56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ  135 (397)
T KOG4283|consen   56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ  135 (397)
T ss_pred             ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce
Confidence            78999999999999999876421111111   1111112223355444   5666667777 999999999999998876


Q ss_pred             CcccccceeeeeeeeeeeecCC--ce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCE-EEEeeCCCc
Q 021744           99 NSNINNRAVIKTDILCRNWVQG--NC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDK-LYSGSKDET  173 (308)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~--~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s~dg~  173 (308)
                      ...  ....+..|..-+++|-.  .+  ++|..+-.|++-|+..+ ...+++.||.+.|.++.|+|..++ |++|+.||.
T Consensus       136 ~a~--~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~  212 (397)
T KOG4283|consen  136 EAV--DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA  212 (397)
T ss_pred             eeE--EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeeeccccCceEEEEeccCceeEEEecCCCce
Confidence            542  22233335555555543  23  77889999999999999 899999999999999999998877 589999999


Q ss_pred             EEEEeCCCC-eEEEEEe---------------CCCeeEEE--EcCCCEEEEE-cCCcEEEEEcCCCcee--e--eeCCCC
Q 021744          174 VRVWDCASG-QCAGVIN---------------LGGEVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTDL--S--LSGPVG  230 (308)
Q Consensus       174 v~~wd~~~~-~~~~~~~---------------~~~~v~~~--~~~~~~l~~~-~d~~i~~wd~~~~~~~--~--~~~~~~  230 (308)
                      |++||++.. .+...+.               |.+.+..+  .+++.++++. .|..+++|+..+++..  .  -..|..
T Consensus       213 irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~  292 (397)
T KOG4283|consen  213 IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQ  292 (397)
T ss_pred             EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccc
Confidence            999999864 3444433               22333333  4788888854 5999999999887533  1  011111


Q ss_pred             ----CEEEEEEeCCEEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE-EeeceEEEE
Q 021744          231 ----QVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL-GSVSFIMFI  297 (308)
Q Consensus       231 ----~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~-~s~s~~i~~  297 (308)
                          .+.--+...+.++.--.++.+.++.+-.+    +.+..+..|...+.+ +|.|+=+... +..+..|+.
T Consensus       293 ~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sg----s~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~  361 (397)
T KOG4283|consen  293 TTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEG----SFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYM  361 (397)
T ss_pred             cccceEEEeecccceEEEEecCCeEEEEEccCc----eEEEeeecccceeeEEeecCchhhhhccccCCcccc
Confidence                11100112224444445589999999887    778889999888888 8887744444 333444433

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.87  E-value=7.4e-21  Score=153.34  Aligned_cols=189  Identities=16%  Similarity=0.201  Sum_probs=144.2

Q ss_pred             eeEEecCCCe---eeccCCCcEEEEECCCCCC---------------cccccceeeeeeeeeeeecC--CceEEeeCCCe
Q 021744           71 AKRFANNTWG---RNNNFNNHSNNYRAGNSKN---------------SNINNRAVIKTDILCRNWVQ--GNCMYGEKCKF  130 (308)
Q Consensus        71 ~i~~s~~g~~---~s~~~d~~i~vwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~  130 (308)
                      .+..++-++-   |+=+..|.|+||++...-.               ......+|+..-..+.|+|.  |..++|..-+.
T Consensus       156 Rvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~  235 (440)
T KOG0302|consen  156 RVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKG  235 (440)
T ss_pred             eeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccc
Confidence            4666666543   6667779999999952210               00112344444566788873  45578888899


Q ss_pred             EEEEEcCCCc--eeeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCC---eEEEEEeCCCeeEEEEcC--CC
Q 021744          131 LHSWTVGDGF--KLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASG---QCAGVINLGGEVGCMISE--GP  202 (308)
Q Consensus       131 i~iwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~---~~~~~~~~~~~v~~~~~~--~~  202 (308)
                      |++|.+.++.  .-...+.+|+..|-.++|+|.. ..|+|||.||+|+|||++.+   .++.+-.|+..|..++-+  ..
T Consensus       236 I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~  315 (440)
T KOG0302|consen  236 IHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP  315 (440)
T ss_pred             eEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc
Confidence            9999998873  1234567899999999999965 67899999999999999998   455555588888888533  34


Q ss_pred             EEEEEc-CCcEEEEEcCCCc---ee-eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCC
Q 021744          203 WIFIGV-TNFVKAWNTQTNT---DL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       203 ~l~~~~-d~~i~~wd~~~~~---~~-~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~  259 (308)
                      +|++|. ||+++|||+++.+   ++ .++.|..+|+++.|+|.   .|++++.|..|.|||+...
T Consensus       316 lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  316 LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence            788887 8999999999754   33 88999999999999987   8999999999999998753

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=3.2e-19  Score=149.91  Aligned_cols=234  Identities=13%  Similarity=0.023  Sum_probs=159.7

Q ss_pred             ceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe--eeccCCCcEEEEECCCCCCccccc
Q 021744           28 LSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINN  104 (308)
Q Consensus        28 ~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~  104 (308)
                      ++++++.++.|++||..++..     +      .. +..+... .++++|+++.  ++++.|+.|++||+.+.+.+... 
T Consensus        45 l~~~~~~~~~v~~~d~~~~~~-----~------~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~-  111 (300)
T TIGR03866        45 LYVCASDSDTIQVIDLATGEV-----I------GT-LPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEI-  111 (300)
T ss_pred             EEEEECCCCeEEEEECCCCcE-----E------Ee-ccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe-
Confidence            457788899999999887611     1      00 1111222 6889999987  55667899999999776443211 


Q ss_pred             ceeeeeeeeeeeecCCce-EEeeCC-CeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEE-EeeCCCcEEEEeCCC
Q 021744          105 RAVIKTDILCRNWVQGNC-MYGEKC-KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDETVRVWDCAS  181 (308)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~-~~g~~d-~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~dg~v~~wd~~~  181 (308)
                       .....+..+.++|++.. +++..+ ..+.+||..+. +....+.. ...+..++|+|++++++ ++..++.|++||+++
T Consensus       112 -~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~  188 (300)
T TIGR03866       112 -PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY-EIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT  188 (300)
T ss_pred             -eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC-eEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence             11223567889999977 555554 45778899877 55544432 33557899999998875 555699999999999


Q ss_pred             CeEEEEEeCC------Ce---e-EEEEcCCCEEEEE--cCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEE-c
Q 021744          182 GQCAGVINLG------GE---V-GCMISEGPWIFIG--VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAG-T  246 (308)
Q Consensus       182 ~~~~~~~~~~------~~---v-~~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g-~  246 (308)
                      ++.+..+...      ..   . ..+.+++++++++  .++.+.+||+++++......+...+.+++|+|+  +|+++ .
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~  268 (300)
T TIGR03866       189 RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNG  268 (300)
T ss_pred             ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcC
Confidence            9887766521      11   1 2235788876543  377899999998887643334557899999999  66665 5


Q ss_pred             CCCeEEEEEcCCCCcccccceeccccCCCeEE-EEec
Q 021744          247 QDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR  282 (308)
Q Consensus       247 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~  282 (308)
                      .++.|++||+.++    +.+.++.....+ +. +|+|
T Consensus       269 ~~~~i~v~d~~~~----~~~~~~~~~~~~-~~~~~~~  300 (300)
T TIGR03866       269 VSNDVSVIDVAAL----KVIKSIKVGRLP-WGVVVRP  300 (300)
T ss_pred             CCCeEEEEECCCC----cEEEEEEccccc-ceeEeCC
Confidence            6999999999997    666777644333 44 5543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=2.3e-21  Score=155.52  Aligned_cols=234  Identities=10%  Similarity=0.077  Sum_probs=180.4

Q ss_pred             CCCCCccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEE
Q 021744           59 PLPPAATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSW  134 (308)
Q Consensus        59 ~~~~~~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iw  134 (308)
                      |....+.||...  +++=+|....  |+|+.||.|+|||+...... .....|.+.|..+++.. +..++.+.|++|+.|
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~-~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~w  134 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI-RTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQW  134 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh-heeecccCceeeEEecc-cceEEecCCcceeee
Confidence            333455688887  8888998844  99999999999999765443 24566777777777766 677999999999999


Q ss_pred             EcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC-CCeeEEEE--cC-CCEEEEE-cC
Q 021744          135 TVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-GGEVGCMI--SE-GPWIFIG-VT  209 (308)
Q Consensus       135 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~-~~~v~~~~--~~-~~~l~~~-~d  209 (308)
                      -+...  +++++.+ ...+..+.-+..+..++||+++  |.|||.+...+++.+.- -..+.++.  |- ..+|+++ +|
T Consensus       135 k~~~~--p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD  209 (433)
T KOG0268|consen  135 KIDGP--PLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD  209 (433)
T ss_pred             eccCC--cceeeec-cccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence            98763  5666664 5677788877777889999874  99999999999998883 34455553  33 3455555 59


Q ss_pred             CcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCe
Q 021744          210 NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTS  286 (308)
Q Consensus       210 ~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~  286 (308)
                      +.|.+||+++..++.-.--...-+.|+|+|+  .|.+|++|..++.||++.-.   .++....+|.+.|.. .|||.|+-
T Consensus       210 rsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~---~p~~v~~dhvsAV~dVdfsptG~E  286 (433)
T KOG0268|consen  210 RSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS---RPLNVHKDHVSAVMDVDFSPTGQE  286 (433)
T ss_pred             CceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhc---ccchhhcccceeEEEeccCCCcch
Confidence            9999999999988733223456678999999  88999999999999999864   788889999999999 99999998


Q ss_pred             EEE-eeceEEEEeecCc
Q 021744          287 LLG-SVSFIMFIGQNNK  302 (308)
Q Consensus       287 l~~-s~s~~i~~~~~~~  302 (308)
                      +++ |.+.+|-|...++
T Consensus       287 fvsgsyDksIRIf~~~~  303 (433)
T KOG0268|consen  287 FVSGSYDKSIRIFPVNH  303 (433)
T ss_pred             hccccccceEEEeecCC
Confidence            885 4466666555443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1.1e-20  Score=155.15  Aligned_cols=210  Identities=17%  Similarity=0.180  Sum_probs=153.8

Q ss_pred             CCe-eeccCCCcEEEEECCCCCCc------c--------------cccceeeeeeeeeeeecCC--ceEEeeCCCeEEEE
Q 021744           78 TWG-RNNNFNNHSNNYRAGNSKNS------N--------------INNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSW  134 (308)
Q Consensus        78 g~~-~s~~~d~~i~vwd~~~~~~~------~--------------~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iw  134 (308)
                      |++ |.|..|-.|.|||+.-...+      +              ....+|...+..+.+...-  -+++|+.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            668 99999999999999532211      0              0112344455555555443  33899999999999


Q ss_pred             EcCCCceeeeEeeCcccceEEEEEeCC-CCEEEEeeCCCcEEEEeCCC-CeEEEEEeCCCeeEEE-E-c-CCCEEEEEc-
Q 021744          135 TVGDGFKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCAS-GQCAGVINLGGEVGCM-I-S-EGPWIFIGV-  208 (308)
Q Consensus       135 d~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~v~~wd~~~-~~~~~~~~~~~~v~~~-~-~-~~~~l~~~~-  208 (308)
                      |+.++ ++..++..|.+.|.++.|+|. ...|++|+.|++|.+.|.+. ...-..++..+.+-.+ + + ....++++. 
T Consensus       272 D~~~g-~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td  350 (463)
T KOG0270|consen  272 DVDTG-KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD  350 (463)
T ss_pred             EcCCC-CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence            99999 899999999999999999985 57899999999999999994 3344455556666555 2 2 233444454 


Q ss_pred             CCcEEEEEcCCC-cee-eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEec
Q 021744          209 TNFVKAWNTQTN-TDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR  282 (308)
Q Consensus       209 d~~i~~wd~~~~-~~~-~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~  282 (308)
                      ||+++-+|+|.. +++ +++.|.++|.+|++++.   ++++++.|+.|++|++....+  +.+....-.-+...| ++.|
T Consensus       351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~--~~v~~~~~~~~rl~c~~~~~  428 (463)
T KOG0270|consen  351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP--KSVKEHSFKLGRLHCFALDP  428 (463)
T ss_pred             CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC--cccccccccccceeecccCC
Confidence            999999999986 555 89999999999999876   899999999999999987543  223322222234556 7788


Q ss_pred             CCCeEEEe
Q 021744          283 DVTSLLGS  290 (308)
Q Consensus       283 d~~~l~~s  290 (308)
                      +-.++++.
T Consensus       429 ~~a~~la~  436 (463)
T KOG0270|consen  429 DVAFTLAF  436 (463)
T ss_pred             CcceEEEe
Confidence            77666543

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.86  E-value=4.1e-21  Score=160.12  Aligned_cols=220  Identities=13%  Similarity=0.219  Sum_probs=173.4

Q ss_pred             ccccc--eeEEecCCCe-eeccCCCcEEEEECCCCC---Ccccccce-eeeeeeeeeeecCCce-EEeeCCCeEEEEEcC
Q 021744           66 ANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSK---NSNINNRA-VIKTDILCRNWVQGNC-MYGEKCKFLHSWTVG  137 (308)
Q Consensus        66 gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~  137 (308)
                      .|..-  ++.++...++ .||+..+ |+|||+....   ++...-.. ....++.|..+++|+. ++|++-.++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGkgc-VKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCCCe-EEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            45444  6777777778 7887665 9999995331   11111111 2334899999999965 899999999999998


Q ss_pred             CCc-eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcE
Q 021744          138 DGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFV  212 (308)
Q Consensus       138 ~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i  212 (308)
                      ... .+..++....-...+++.+||.+..++|..||.|.|||+++...++.|+ |..-..|+  ..+|..|-+|. |++|
T Consensus       496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv  575 (705)
T KOG0639|consen  496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV  575 (705)
T ss_pred             CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence            662 2333444444567788999999999999999999999999999999999 66666665  57899999887 9999


Q ss_pred             EEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE
Q 021744          213 KAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG  289 (308)
Q Consensus       213 ~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~  289 (308)
                      +.||++++....-....+.|.++.++|.  +++.|-+++.+.+......     ....+.-|...|.+ .|.+-|+++++
T Consensus       576 RcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp-----~kyqlhlheScVLSlKFa~cGkwfvS  650 (705)
T KOG0639|consen  576 RCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-----EKYQLHLHESCVLSLKFAYCGKWFVS  650 (705)
T ss_pred             eehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCc-----cceeecccccEEEEEEecccCceeee
Confidence            9999999877755556789999999998  9999999999999888764     34567778999999 99999999997


Q ss_pred             ee
Q 021744          290 SV  291 (308)
Q Consensus       290 s~  291 (308)
                      .+
T Consensus       651 tG  652 (705)
T KOG0639|consen  651 TG  652 (705)
T ss_pred             cC
Confidence            66

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.86  E-value=4.6e-20  Score=148.78  Aligned_cols=225  Identities=14%  Similarity=0.101  Sum_probs=160.2

Q ss_pred             CCceEEecCCCeEEEeecCCCCC---CCCCcccc-cCCCCCCccccccc--eeEEecC--CCeeeccCCCcEEEEECCCC
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNR---FPCPYLHR-ELPLPPAATANGAA--AKRFANN--TWGRNNNFNNHSNNYRAGNS   97 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~---~~~~~~~~-~~~~~~~~~gh~~~--~i~~s~~--g~~~s~~~d~~i~vwd~~~~   97 (308)
                      ..+.|+=+..|.|.||+....-+   .+....+. .........+|...  .+.|||-  |..+||.--+.|++|...++
T Consensus       165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g  244 (440)
T KOG0302|consen  165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG  244 (440)
T ss_pred             cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccC
Confidence            35677788899999999764311   11111111 11111233477666  8999993  33377777788999999776


Q ss_pred             CCc--ccccceeeeeeeeeeeecCCc--eEEeeCCCeEEEEEcCCCc-eeeeEeeCcccceEEEEEeCCCCEEEEeeCCC
Q 021744           98 KNS--NINNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE  172 (308)
Q Consensus        98 ~~~--~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg  172 (308)
                      ...  ..+..+|...|-.+.++|...  +++++.|+.|+|||++.+. +.....+.|.+.|..+.|+....+|++|+.||
T Consensus       245 ~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdG  324 (440)
T KOG0302|consen  245 SWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDG  324 (440)
T ss_pred             ceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCc
Confidence            532  234566888899999999874  3889999999999999772 23334488999999999999888999999999


Q ss_pred             cEEEEeCCC---CeEEEEEe-CCCeeEEE-Ec--CCCEEE-EEcCCcEEEEEcCCCce-----------------eeeeC
Q 021744          173 TVRVWDCAS---GQCAGVIN-LGGEVGCM-IS--EGPWIF-IGVTNFVKAWNTQTNTD-----------------LSLSG  227 (308)
Q Consensus       173 ~v~~wd~~~---~~~~~~~~-~~~~v~~~-~~--~~~~l~-~~~d~~i~~wd~~~~~~-----------------~~~~~  227 (308)
                      +++|||++.   ++++.+++ |..+|+++ +.  +...++ +|.|.+|.+||+....-                 +.+.-
T Consensus       325 t~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFV  404 (440)
T KOG0302|consen  325 TLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFV  404 (440)
T ss_pred             eEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEE
Confidence            999999986   67788888 89999998 43  244444 45599999999864311                 11222


Q ss_pred             C--CCCEEEEEEeCC---EEEEEcCCCe
Q 021744          228 P--VGQVYAMAVGND---LLFAGTQDGA  250 (308)
Q Consensus       228 ~--~~~v~~~~~~~~---~l~~g~~dg~  250 (308)
                      |  ...+..+.|++.   ++++.+.||.
T Consensus       405 HqGQke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  405 HQGQKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             ecchhHhhhheeccCCCCeEEEecccce
Confidence            3  346778888876   8888887764

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.86  E-value=2.9e-20  Score=154.84  Aligned_cols=244  Identities=12%  Similarity=0.071  Sum_probs=185.6

Q ss_pred             ceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCcccccce
Q 021744           28 LSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRA  106 (308)
Q Consensus        28 ~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~  106 (308)
                      .+|+.+.|+.+++|.-...        ..+.|......|....|++......+ ++|+..+.|+|||+. .+.+...++.
T Consensus        49 vvas~~gdk~~~~~~K~g~--------~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkd  119 (673)
T KOG4378|consen   49 VVASMAGDKVMRIKEKDGK--------TPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLR-AKLIHRFLKD  119 (673)
T ss_pred             EEeecCCceeEEEecccCC--------CCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhH-HHHHhhhccC
Confidence            3445567999999974432        11233334333442227777666778 999999999999997 5566667788


Q ss_pred             eeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCc-ccceEEEEEeCCCC-EEEEeeCCCcEEEEeCCCCe
Q 021744          107 VIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGH-QKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQ  183 (308)
Q Consensus       107 ~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h-~~~v~~~~~~~~~~-~l~s~s~dg~v~~wd~~~~~  183 (308)
                      |...|.++.+.....+ ++++..|.|.|..+.++ ....+|... ...|.-+.|+|..+ +|.+++.+|.|.+||+....
T Consensus       120 h~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~-~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s  198 (673)
T KOG4378|consen  120 HQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK-QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS  198 (673)
T ss_pred             CcceeEEEEecCCcceeEEeccCCcEEEEecccC-ccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC
Confidence            8888999998776655 88888999999999988 455555532 45677899998765 46789999999999999877


Q ss_pred             EEEEEe--CCCeeE--EEEcCCCE-EE-EEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEE
Q 021744          184 CAGVIN--LGGEVG--CMISEGPW-IF-IGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK  255 (308)
Q Consensus       184 ~~~~~~--~~~~v~--~~~~~~~~-l~-~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd  255 (308)
                      ++..+.  |..+..  |++|.+.. |+ +|.|..|.+||.+............+..+++|+++  +|++|+..|.|..||
T Consensus       199 p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD  278 (673)
T KOG4378|consen  199 PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYD  278 (673)
T ss_pred             cccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEe
Confidence            776655  555554  55665554 44 46699999999997766633344568899999999  999999999999999


Q ss_pred             cCCCCcccccceeccccCCCeEE-EEecCC
Q 021744          256 FNVTTNCFEPAASLKVHTDSNRA-HFSRDV  284 (308)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~  284 (308)
                      ++..+   .++..+..|...|++ +|-|.-
T Consensus       279 ~R~~k---~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  279 MRSTK---APVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cccCC---CCceEeeecccceeEEEeeecc
Confidence            99874   899999999999999 998765

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.86  E-value=3.9e-20  Score=154.09  Aligned_cols=246  Identities=11%  Similarity=0.091  Sum_probs=176.3

Q ss_pred             EecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe--eeccCCCcEEEEECCCCCCccccccee-
Q 021744           31 ADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAV-  107 (308)
Q Consensus        31 s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~-  107 (308)
                      .+|...++++||+......+|-..+.        ..|....+.|+.....  ++-+.|+.+++|.-. ++....+.... 
T Consensus         7 ~aS~gd~~kl~D~s~~~~~~~~~~~t--------~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~-g~~~~Vp~~~k~   77 (673)
T KOG4378|consen    7 VASTGDKTKLSDFSDLETKSEYVHQT--------AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKD-GKTPEVPRVRKL   77 (673)
T ss_pred             eeccCCceEEeecccccCccccccCC--------CCCcceeeeccccceEEEeecCCceeEEEeccc-CCCCccceeecc
Confidence            34445689999987652222211111        0111125777766655  788889999999864 33222222111 


Q ss_pred             -eeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEE
Q 021744          108 -IKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA  185 (308)
Q Consensus       108 -~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~  185 (308)
                       .....|+.......+ ++|+..+.|+|||++.. .+.+.+++|+..|+++.++-...+|++++..|.|.+..+.+++.-
T Consensus        78 ~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t  156 (673)
T KOG4378|consen   78 TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK-LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT  156 (673)
T ss_pred             ccchHHHHhhhhcceeeeccCcCceeeehhhHHH-HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc
Confidence             111223332222344 88999999999999966 678889999999999999999999999999999999999999988


Q ss_pred             EEEeCC-Ce-eEEE--EcCCCEEE-E-EcCCcEEEEEcCCCcee--eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEE
Q 021744          186 GVINLG-GE-VGCM--ISEGPWIF-I-GVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAW  254 (308)
Q Consensus       186 ~~~~~~-~~-v~~~--~~~~~~l~-~-~~d~~i~~wd~~~~~~~--~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iw  254 (308)
                      .++.++ +. +.-+  ++..++++ + +.+|.|.+||.....++  ....|..+...++|+|.   +|++.+.|.+|.+|
T Consensus       157 t~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~y  236 (673)
T KOG4378|consen  157 TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIY  236 (673)
T ss_pred             cceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEe
Confidence            888855 33 3333  45555554 3 44899999999987776  56789999999999998   89999999999999


Q ss_pred             EcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          255 KFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      |....    +....+ ....+.+. +|+++|.+|+++.
T Consensus       237 D~~s~----~s~~~l-~y~~Plstvaf~~~G~~L~aG~  269 (673)
T KOG4378|consen  237 DIRSQ----ASTDRL-TYSHPLSTVAFSECGTYLCAGN  269 (673)
T ss_pred             ecccc----ccccee-eecCCcceeeecCCceEEEeec
Confidence            99975    334444 34567778 9999999998655

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.86  E-value=4.6e-20  Score=166.45  Aligned_cols=217  Identities=14%  Similarity=0.163  Sum_probs=170.9

Q ss_pred             CCccccccc---eeEEecCCCe-eecc--CCCcEEEEECCCCC-----------CcccccceeeeeeeeeeeecCCce-E
Q 021744           62 PAATANGAA---AKRFANNTWG-RNNN--FNNHSNNYRAGNSK-----------NSNINNRAVIKTDILCRNWVQGNC-M  123 (308)
Q Consensus        62 ~~~~gh~~~---~i~~s~~g~~-~s~~--~d~~i~vwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~-~  123 (308)
                      ++..+|...   .+.++|+|.. |||+  .|+.++||+.+.--           ........|...+.++.|+++|.+ +
T Consensus         6 p~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA   85 (942)
T KOG0973|consen    6 PTWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA   85 (942)
T ss_pred             ccccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence            344455554   7999999999 9999  99999999985211           111123456667999999999988 8


Q ss_pred             EeeCCCeEEEEEcCC----------C-------ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEE
Q 021744          124 YGEKCKFLHSWTVGD----------G-------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG  186 (308)
Q Consensus       124 ~g~~d~~i~iwd~~~----------~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~  186 (308)
                      +|++|+.|.||+...          +       .+....+.+|...|..++|+|++.+|++++.|++|.+||..+.+.+.
T Consensus        86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~  165 (942)
T KOG0973|consen   86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK  165 (942)
T ss_pred             eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence            999999999999772          0       04567889999999999999999999999999999999999999999


Q ss_pred             EEe-CCCeeEEEE--cCCCEEEEEc-CCcEEEEEcCCCcee-eeeCC------CCCEEEEEEeCC--EEEEEcC----CC
Q 021744          187 VIN-LGGEVGCMI--SEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGP------VGQVYAMAVGND--LLFAGTQ----DG  249 (308)
Q Consensus       187 ~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~------~~~v~~~~~~~~--~l~~g~~----dg  249 (308)
                      .+. |...+..+.  |-|+++++-+ |++|++|++.+.... .+..+      ......+.||||  +|++...    -.
T Consensus       166 vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~  245 (942)
T KOG0973|consen  166 VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKS  245 (942)
T ss_pred             eeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcc
Confidence            988 888887764  6699999755 999999997765444 33332      336789999999  7776543    23


Q ss_pred             eEEEEEcCCCCcccccceeccccCCCeEE-EEec
Q 021744          250 AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR  282 (308)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~  282 (308)
                      .+.|.+-.+    ++.-..+-+|..++.+ +|+|
T Consensus       246 ~~~IieR~t----Wk~~~~LvGH~~p~evvrFnP  275 (942)
T KOG0973|consen  246 TIAIIERGT----WKVDKDLVGHSAPVEVVRFNP  275 (942)
T ss_pred             eeEEEecCC----ceeeeeeecCCCceEEEEeCh
Confidence            577777655    3666778899999999 9996

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.86  E-value=6e-20  Score=157.07  Aligned_cols=225  Identities=10%  Similarity=0.074  Sum_probs=160.2

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCC--
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSK--   98 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~--   98 (308)
                      +-.+|++++.|.++|+||+...          +......+.||+..  .++|.|....  ++|+.|+.|.|||+.-..  
T Consensus       111 ge~~lVsasGDsT~r~Wdvk~s----------~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d  180 (720)
T KOG0321|consen  111 GESLLVSASGDSTIRPWDVKTS----------RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVD  180 (720)
T ss_pred             CceeEEEccCCceeeeeeeccc----------eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchh
Confidence            3578999999999999998865          12233357799998  8999998887  999999999999993111  


Q ss_pred             ------------------C---ccc---ccceeeeeeee---eeeecCC-ceEEeeC-CCeEEEEEcCCCc-----eeee
Q 021744           99 ------------------N---SNI---NNRAVIKTDIL---CRNWVQG-NCMYGEK-CKFLHSWTVGDGF-----KLLT  144 (308)
Q Consensus        99 ------------------~---~~~---~~~~~~~~~~~---~~~~~~~-~~~~g~~-d~~i~iwd~~~~~-----~~~~  144 (308)
                                        +   ...   ....+...+..   +.++.|. .+++++. |+.|+|||++...     +...
T Consensus       181 ~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~  260 (720)
T KOG0321|consen  181 ALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG  260 (720)
T ss_pred             hHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCc
Confidence                              0   000   00112222222   4455555 5577665 9999999998652     1111


Q ss_pred             --EeeCc---ccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCe--EEEEEeCC----CeeE-EEEcCCCEEEEEc-CCc
Q 021744          145 --QLEGH---QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ--CAGVINLG----GEVG-CMISEGPWIFIGV-TNF  211 (308)
Q Consensus       145 --~~~~h---~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~--~~~~~~~~----~~v~-~~~~~~~~l~~~~-d~~  211 (308)
                        .+.-|   .-.+.++..+..|.+|+..+.|++|++||+.+..  ++..+.+.    ..+. ++++++.++++|+ |..
T Consensus       261 ~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~  340 (720)
T KOG0321|consen  261 SDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQ  340 (720)
T ss_pred             ccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcc
Confidence              12223   3456788888888887666679999999998643  33333311    1122 3468999999887 999


Q ss_pred             EEEEEcCCCcee--eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCC
Q 021744          212 VKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       212 i~~wd~~~~~~~--~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~  259 (308)
                      .++|.+.+.+.-  .+.+|.-.|++++|.|.   -++++++|-.+++|++..+
T Consensus       341 ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  341 AYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             eeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            999999987654  68899999999999987   7888899999999999654

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.86  E-value=9.8e-19  Score=146.06  Aligned_cols=256  Identities=16%  Similarity=0.182  Sum_probs=175.1

Q ss_pred             CCceEE--ecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe--eeccCCCcEEEEECCCCCCc
Q 021744           26 GGLSTA--DTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG--RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        26 ~~~~~s--~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~  100 (308)
                      |+++..  .+.+..+.|||.+..           ..+.+.....+.- ...|+|....  ++.+ -+.+.+|+++.+...
T Consensus       168 G~~l~~vD~s~~h~lSVWdWqk~-----------~~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~  235 (626)
T KOG2106|consen  168 GSLLCAVDDSNPHMLSVWDWQKK-----------AKLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLV  235 (626)
T ss_pred             CceEEEecCCCccccchhhchhh-----------hccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceE
Confidence            444443  466788999999887           2222221122222 6789998877  5554 567999999766433


Q ss_pred             cc---ccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEE
Q 021744          101 NI---NNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW  177 (308)
Q Consensus       101 ~~---~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~w  177 (308)
                      ..   ..+..++.|.+++|.++|..++|.++|.|.||+..+. +..+....|.+.|.+++...+|. |+||+.|..|..|
T Consensus       236 k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~-~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~W  313 (626)
T KOG2106|consen  236 KRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTN-RISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILW  313 (626)
T ss_pred             EEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCc-eEEeEeeecCCceEEEEEecCcc-EeecCccceEEec
Confidence            21   2333445699999999999999999999999999887 66666669999999999998886 5559999999999


Q ss_pred             eCCCCeEEEEEe------------------------------------------CCCeeEEE--EcCCCEEE-EEcCCcE
Q 021744          178 DCASGQCAGVIN------------------------------------------LGGEVGCM--ISEGPWIF-IGVTNFV  212 (308)
Q Consensus       178 d~~~~~~~~~~~------------------------------------------~~~~v~~~--~~~~~~l~-~~~d~~i  212 (308)
                      | ..-+.++..+                                          |......+  .|+...++ +|.|+.+
T Consensus       314 d-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v  392 (626)
T KOG2106|consen  314 D-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHV  392 (626)
T ss_pred             c-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceE
Confidence            8 3222222211                                          00111111  13334444 4458999


Q ss_pred             EEEEcCCCceeeeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEe
Q 021744          213 KAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGS  290 (308)
Q Consensus       213 ~~wd~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s  290 (308)
                      ++|+  ..++..-....+++.|+.|+|. .+|.|+..|...+.|.++.    ..+..... ..++++ +|+|+|.+|+.+
T Consensus       393 ~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~----~lv~~~~d-~~~ls~v~ysp~G~~lAvg  465 (626)
T KOG2106|consen  393 RLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQ----DLVTIHTD-NEQLSVVRYSPDGAFLAVG  465 (626)
T ss_pred             EEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccc----eeEEEEec-CCceEEEEEcCCCCEEEEe
Confidence            9998  3334433334668889999998 9999999999999999884    44443334 889999 999999999955


Q ss_pred             e-ceEEEE--eecCce
Q 021744          291 V-SFIMFI--GQNNKG  303 (308)
Q Consensus       291 ~-s~~i~~--~~~~~~  303 (308)
                      . +..||+  ...++.
T Consensus       466 s~d~~iyiy~Vs~~g~  481 (626)
T KOG2106|consen  466 SHDNHIYIYRVSANGR  481 (626)
T ss_pred             cCCCeEEEEEECCCCc
Confidence            5 555555  444443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=3.5e-19  Score=140.25  Aligned_cols=234  Identities=14%  Similarity=0.090  Sum_probs=170.2

Q ss_pred             cccccc--eeEEecCCCe-eeccCCCcEEEEECCCCC--C-cccccceeeeeeeeeeeecCC--ce-EEeeCCCeEEEEE
Q 021744           65 TANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSK--N-SNINNRAVIKTDILCRNWVQG--NC-MYGEKCKFLHSWT  135 (308)
Q Consensus        65 ~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~--~-~~~~~~~~~~~~~~~~~~~~~--~~-~~g~~d~~i~iwd  135 (308)
                      .+|..-  ++.|.+-|+. |+++.|.+|+|||.+...  . .....+.|...+..+.+-+..  .. ++++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            456655  8999999999 999999999999974332  1 122446777778888776654  44 8899999999998


Q ss_pred             cCCCc--------eeeeEeeCcccceEEEEEeCC--CCEEEEeeCCCcEEEEeCCCCeEEEEEe--------------CC
Q 021744          136 VGDGF--------KLLTQLEGHQKVVSGITLPSG--SDKLYSGSKDETVRVWDCASGQCAGVIN--------------LG  191 (308)
Q Consensus       136 ~~~~~--------~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~dg~v~~wd~~~~~~~~~~~--------------~~  191 (308)
                      -....        ....++......|+++.|.|.  |-++++++.||+++||+.-.--.+..+.              +.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            63110        234456667889999999984  6789999999999999876543333322              22


Q ss_pred             CeeEEEE-c----CCCEEEEEcCC------cEEEEEcCCCc--e--e-eeeCCCCCEEEEEEeCC------EEEEEcCCC
Q 021744          192 GEVGCMI-S----EGPWIFIGVTN------FVKAWNTQTNT--D--L-SLSGPVGQVYAMAVGND------LLFAGTQDG  249 (308)
Q Consensus       192 ~~v~~~~-~----~~~~l~~~~d~------~i~~wd~~~~~--~--~-~~~~~~~~v~~~~~~~~------~l~~g~~dg  249 (308)
                      .+..|+. .    ...+|++|++.      .++||.-....  .  + ++.+|.++|++++|.|+      .||+++.||
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG  249 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence            3344552 2    25578888865      78888665432  2  2 67899999999999998      799999999


Q ss_pred             eEEEEEcCCCC----------------cccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          250 AILAWKFNVTT----------------NCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       250 ~i~iwd~~~~~----------------~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                       |+||.+....                ...+.+..+..|...|.. .|+-.|..|.+++ ++.+-+|+
T Consensus       250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK  316 (361)
T ss_pred             -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence             9999987311                013455667799999999 9999999998777 44444443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.84  E-value=2.4e-19  Score=153.44  Aligned_cols=265  Identities=15%  Similarity=0.105  Sum_probs=179.9

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      -.+||-+-.||.|.++|....+-     -.++..+.. ...|-++  .+.+.|.... ++++.|.++++||++.....+.
T Consensus        64 eHiLavadE~G~i~l~dt~~~~f-----r~ee~~lk~-~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~  137 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVF-----RLEERQLKK-PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG  137 (720)
T ss_pred             cceEEEecCCCceeeecchhhhc-----chhhhhhcc-cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc
Confidence            35788888999999999776410     011122222 3456666  7888994444 9999999999999988776554


Q ss_pred             -ccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCc--------------------------eeeeEeeCcccce
Q 021744          103 -NNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGF--------------------------KLLTQLEGHQKVV  153 (308)
Q Consensus       103 -~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~--------------------------~~~~~~~~h~~~v  153 (308)
                       ...+|...+..++|.+.+..  ++|+.||.|.|||++...                          +.++.-+.+...|
T Consensus       138 ~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti  217 (720)
T KOG0321|consen  138 RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTI  217 (720)
T ss_pred             eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCce
Confidence             35678888999999998854  899999999999986331                          0111122344445


Q ss_pred             EE---EEEeCCCCEEEEeeC-CCcEEEEeCCCCeEEEEEe---------CC---CeeEEEE--cCCCEEEE-EcCCcEEE
Q 021744          154 SG---ITLPSGSDKLYSGSK-DETVRVWDCASGQCAGVIN---------LG---GEVGCMI--SEGPWIFI-GVTNFVKA  214 (308)
Q Consensus       154 ~~---~~~~~~~~~l~s~s~-dg~v~~wd~~~~~~~~~~~---------~~---~~v~~~~--~~~~~l~~-~~d~~i~~  214 (308)
                      .+   +.+..|...|++++. |+.|++||++.........         +.   --+.++.  ..|.+|++ +.|+.|++
T Consensus       218 ~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~  297 (720)
T KOG0321|consen  218 FSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYF  297 (720)
T ss_pred             eeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEE
Confidence            44   445557888999888 9999999999765443322         11   1123443  34676665 55999999


Q ss_pred             EEcCCCcee---eeeCCCCC--EEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecC--C
Q 021744          215 WNTQTNTDL---SLSGPVGQ--VYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRD--V  284 (308)
Q Consensus       215 wd~~~~~~~---~~~~~~~~--v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d--~  284 (308)
                      |++.+...-   .+.++...  -..-..+|+  ++++|+.|...++|.+.+..   .....+.+|...|.+ +|.|.  .
T Consensus       298 ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e---~~~~~l~Ght~eVt~V~w~pS~~t  374 (720)
T KOG0321|consen  298 YNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE---APPALLLGHTREVTTVRWLPSATT  374 (720)
T ss_pred             EeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc---CChhhhhCcceEEEEEeeccccCC
Confidence            999876433   33333221  112234677  99999999999999999874   667778899999999 88874  4


Q ss_pred             CeEEEeeceEEEEee
Q 021744          285 TSLLGSVSFIMFIGQ  299 (308)
Q Consensus       285 ~~l~~s~s~~i~~~~  299 (308)
                      ..+.++-+..+-+|.
T Consensus       375 ~v~TcSdD~~~kiW~  389 (720)
T KOG0321|consen  375 PVATCSDDFRVKIWR  389 (720)
T ss_pred             CceeeccCcceEEEe
Confidence            445554454444443

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2e-19  Score=148.56  Aligned_cols=224  Identities=14%  Similarity=0.150  Sum_probs=175.4

Q ss_pred             ccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCc-ccccceeeeeeeeeeeecCCc-e-EEeeCCCeEEEEEcCCCc
Q 021744           66 ANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS-NINNRAVIKTDILCRNWVQGN-C-MYGEKCKFLHSWTVGDGF  140 (308)
Q Consensus        66 gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~-~~g~~d~~i~iwd~~~~~  140 (308)
                      .|.+. ++.|+|.... ++|+.|++++||.++..... .+...-...++.++.|.|+|. . ++++....++.||+.+.+
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            44445 8999999999 99999999999999644322 223333444589999999996 3 788899999999998773


Q ss_pred             -eeeeEeeCcc-cceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEEE-EcCCcEEEE
Q 021744          141 -KLLTQLEGHQ-KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFI-GVTNFVKAW  215 (308)
Q Consensus       141 -~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~-~~d~~i~~w  215 (308)
                       ..+..+.+++ ..+....++|++++|+..+..|.|.+-...+++.+..++.++.+..+  +++++.|++ |.+|.|.+|
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~  371 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW  371 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence             2234444554 46678889999999999999999999999999999999999988866  577777765 559999999


Q ss_pred             EcCCCcee-eeeCCCCC--EEEEEEeCC--EEEEEcCCCeEEEEEcCCCCc--ccccceeccccCCCeEE-EEecCCCeE
Q 021744          216 NTQTNTDL-SLSGPVGQ--VYAMAVGND--LLFAGTQDGAILAWKFNVTTN--CFEPAASLKVHTDSNRA-HFSRDVTSL  287 (308)
Q Consensus       216 d~~~~~~~-~~~~~~~~--v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~v~~-~~s~d~~~l  287 (308)
                      |+++..++ ++.. .+.  -++++.+++  +||+|++.|.|.|||..+...  ..+++..+..-...|+. .|++|.++|
T Consensus       372 nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL  450 (514)
T KOG2055|consen  372 NLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL  450 (514)
T ss_pred             ecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence            99999877 3332 232  356666666  999999999999999654211  13778888888888999 999999988


Q ss_pred             EEe
Q 021744          288 LGS  290 (308)
Q Consensus       288 ~~s  290 (308)
                      +.+
T Consensus       451 Aia  453 (514)
T KOG2055|consen  451 AIA  453 (514)
T ss_pred             hhh
Confidence            733

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.84  E-value=1.9e-19  Score=141.05  Aligned_cols=195  Identities=19%  Similarity=0.207  Sum_probs=149.4

Q ss_pred             ceeeeeeeeeeeecCC-ce-EEeeCCCeEEEEEcCCCce-----ee---------eEeeCcccceEEEEEeC-CCCEEEE
Q 021744          105 RAVIKTDILCRNWVQG-NC-MYGEKCKFLHSWTVGDGFK-----LL---------TQLEGHQKVVSGITLPS-GSDKLYS  167 (308)
Q Consensus       105 ~~~~~~~~~~~~~~~~-~~-~~g~~d~~i~iwd~~~~~~-----~~---------~~~~~h~~~v~~~~~~~-~~~~l~s  167 (308)
                      ..|.+.+..+..-+.. ++ ++|+.||.|.+||++....     .+         ..-.+|+-.|..+.|-| |..++.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            4455566666665543 55 8999999999999975420     00         01136888999999988 5678999


Q ss_pred             eeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--Ec---CCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC
Q 021744          168 GSKDETVRVWDCASGQCAGVINLGGEVGCM--IS---EGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND  240 (308)
Q Consensus       168 ~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~---~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~  240 (308)
                      ++-|.++++||.++-+....|+.++.+..-  +|   ...++++|. +-.|++.|+.++... .+.+|.+.|.++.|+|.
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~  199 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS  199 (397)
T ss_pred             ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence            999999999999999999999988877643  22   355677887 669999999999887 89999999999999998


Q ss_pred             ---EEEEEcCCCeEEEEEcCCCCccccc-----------ceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          241 ---LLFAGTQDGAILAWKFNVTTNCFEP-----------AASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       241 ---~l~~g~~dg~i~iwd~~~~~~~~~~-----------~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                         .|++|+.||.|++||++.-..++..           +++-..|.+.+.. +|+.|+++++..+ +..+-.++
T Consensus       200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn  274 (397)
T KOG4283|consen  200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN  274 (397)
T ss_pred             ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence               8999999999999999865322211           1223367788899 9999999998655 44444443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.84  E-value=6e-19  Score=152.31  Aligned_cols=270  Identities=15%  Similarity=0.139  Sum_probs=185.7

Q ss_pred             CCceEEecCCCeEEEeecCCCC------CCCCCcccccCCC-------------CCCccccccc--eeEEecCCCe-eec
Q 021744           26 GGLSTADTRQKVCNYWRAGKCN------RFPCPYLHRELPL-------------PPAATANGAA--AKRFANNTWG-RNN   83 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~------~~~~~~~~~~~~~-------------~~~~~gh~~~--~i~~s~~g~~-~s~   83 (308)
                      .-++||+|+|..||+|+..-..      +..-.....+.|.             -.-+.||+++  ++.|+|++.. +++
T Consensus       206 ~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSA  285 (764)
T KOG1063|consen  206 DLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSA  285 (764)
T ss_pred             cEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheec
Confidence            4689999999999999854321      0000000001111             1233499999  9999999977 999


Q ss_pred             cCCCcEEEEECCCC--CCccc----ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCc--eeeeEeeCcccceE
Q 021744           84 NFNNHSNNYRAGNS--KNSNI----NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGF--KLLTQLEGHQKVVS  154 (308)
Q Consensus        84 ~~d~~i~vwd~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~--~~~~~~~~h~~~v~  154 (308)
                      +.|+++.+|..+..  -....    ...+.......+.|++++++ ++-+..|..++|-.++..  .+...+.||.+.|.
T Consensus       286 SaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~  365 (764)
T KOG1063|consen  286 SADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVK  365 (764)
T ss_pred             ccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccce
Confidence            99999999987533  11110    11122233677889999877 777889999999843321  33445679999999


Q ss_pred             EEEEeCCCCEEEEeeCCCcEEEEeCCC-CeEEEEEe----CCCeeEEEE-cC-CCEEEEEc-CCcEEEEEcCCC------
Q 021744          155 GITLPSGSDKLYSGSKDETVRVWDCAS-GQCAGVIN----LGGEVGCMI-SE-GPWIFIGV-TNFVKAWNTQTN------  220 (308)
Q Consensus       155 ~~~~~~~~~~l~s~s~dg~v~~wd~~~-~~~~~~~~----~~~~v~~~~-~~-~~~l~~~~-d~~i~~wd~~~~------  220 (308)
                      +++|+|.|++|++.+.|-+-+++---. .+.-.++.    |+....|+. -+ ...+++|. .+.+++|+....      
T Consensus       366 dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~  445 (764)
T KOG1063|consen  366 DVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLM  445 (764)
T ss_pred             eeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHH
Confidence            999999999999999999999986541 11222222    666667763 33 33444444 556778764210      


Q ss_pred             -----------------------------------------------------------------------ceeeeeCCC
Q 021744          221 -----------------------------------------------------------------------TDLSLSGPV  229 (308)
Q Consensus       221 -----------------------------------------------------------------------~~~~~~~~~  229 (308)
                                                                                             +...+.+|.
T Consensus       446 ~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHG  525 (764)
T KOG1063|consen  446 AICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHG  525 (764)
T ss_pred             HHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCc
Confidence                                                                                   011456788


Q ss_pred             CCEEEEEEeCC--EEEEEcCCC-----eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-c--eEEEEe
Q 021744          230 GQVYAMAVGND--LLFAGTQDG-----AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-S--FIMFIG  298 (308)
Q Consensus       230 ~~v~~~~~~~~--~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s--~~i~~~  298 (308)
                      ..|++++.+|+  ++|+++...     .|++|+..+-    ..++.+..|.-.|+. +|||||++|++.+ +  ..+|-.
T Consensus       526 yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W----~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~  601 (764)
T KOG1063|consen  526 YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW----LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV  601 (764)
T ss_pred             eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch----hhhheecccceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence            99999999998  888887643     4899998884    667789999999999 9999999999655 4  444444


Q ss_pred             e
Q 021744          299 Q  299 (308)
Q Consensus       299 ~  299 (308)
                      +
T Consensus       602 ~  602 (764)
T KOG1063|consen  602 Q  602 (764)
T ss_pred             e
Confidence            4

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=3e-20  Score=168.42  Aligned_cols=243  Identities=12%  Similarity=0.102  Sum_probs=184.7

Q ss_pred             eEEEeecCCCCCCCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCC-e-eeccCC
Q 021744           11 RVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTW-G-RNNNFN   86 (308)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~-~-~s~~~d   86 (308)
                      -.|++|-+++-+++.-.+||.|..||.|-+||...-..      ..+.+......-|++.  .+.|++.+. . |+|+.|
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~------~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~  138 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA------NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADD  138 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhcc------CcchHHHhhhcccCCceeeeeccccCCceeeccCCC
Confidence            46788877777777778999999999999999776300      0112333445567777  799999877 5 999999


Q ss_pred             CcEEEEECCCCCCcccc-cceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCccc--ceEEEEEeCC
Q 021744           87 NHSNNYRAGNSKNSNIN-NRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQK--VVSGITLPSG  161 (308)
Q Consensus        87 ~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~--~v~~~~~~~~  161 (308)
                      |.|.|||++..+..... .......|.+++|...-..  ++++.+|.+.|||++.. +.+-.+..|..  .+..++|+|+
T Consensus       139 geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~ls~~~~~~~~S~l~WhP~  217 (1049)
T KOG0307|consen  139 GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIKLSDTPGRMHCSVLAWHPD  217 (1049)
T ss_pred             CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC-CcccccccCCCccceeeeeeCCC
Confidence            99999999876544333 2223445888888766533  78899999999999988 55555554543  4778999998


Q ss_pred             C-CEEEEeeCCC---cEEEEeCCC-CeEEEEEe-CCCeeEEE--Ec-CCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCC
Q 021744          162 S-DKLYSGSKDE---TVRVWDCAS-GQCAGVIN-LGGEVGCM--IS-EGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVG  230 (308)
Q Consensus       162 ~-~~l~s~s~dg---~v~~wd~~~-~~~~~~~~-~~~~v~~~--~~-~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~  230 (308)
                      . ..+++++.|.   .|.+||++. ..+++++. |..-+.++  ++ |.++|+++. |++|.+|+.++++.+ .+....+
T Consensus       218 ~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n  297 (1049)
T KOG0307|consen  218 HATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN  297 (1049)
T ss_pred             CceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc
Confidence            6 5567776654   699999985 45677775 66666666  33 446777655 999999999999998 7777788


Q ss_pred             CEEEEEEeCC---EEEEEcCCCeEEEEEcCCCC
Q 021744          231 QVYAMAVGND---LLFAGTQDGAILAWKFNVTT  260 (308)
Q Consensus       231 ~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~  260 (308)
                      ++..+.|+|.   .|++++.||.|.||.+....
T Consensus       298 W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  298 WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            9999999987   89999999999999998754

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.5e-18  Score=152.82  Aligned_cols=222  Identities=10%  Similarity=0.094  Sum_probs=168.1

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCC-CCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNS-KNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEG  148 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~  148 (308)
                      .++|.|+|+. .+++.|+.||+|+.... +.+. ....+...+..++. ..+.+++++.+++|.+|....+ +.-..+.-
T Consensus        18 ~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~-ti~~~g~~v~~ia~-~s~~f~~~s~~~tv~~y~fps~-~~~~iL~R   94 (933)
T KOG1274|consen   18 LICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE-TIDISGELVSSIAC-YSNHFLTGSEQNTVLRYKFPSG-EEDTILAR   94 (933)
T ss_pred             EEEEcCCCCEEEEecCCCceEEeecCCcccCCc-hhhccCceeEEEee-cccceEEeeccceEEEeeCCCC-Cccceeee
Confidence            6899999999 99999999999998554 2211 11112222333332 2235699999999999999877 33323333


Q ss_pred             cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-
Q 021744          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-  223 (308)
Q Consensus       149 h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-  223 (308)
                      -+-++++++|+.+|++++.||.|-.|++-++.+......+. |.+++.++  .|++++|++.+ ||.|++||+.++.+. 
T Consensus        95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~  174 (933)
T KOG1274|consen   95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSK  174 (933)
T ss_pred             eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhh
Confidence            45789999999999999999999999999999888777777 89999988  48899999776 999999999988765 


Q ss_pred             eeeC--------CCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecc--ccCCCeEE-EEecCCCeEEEe
Q 021744          224 SLSG--------PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK--VHTDSNRA-HFSRDVTSLLGS  290 (308)
Q Consensus       224 ~~~~--------~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~-~~s~d~~~l~~s  290 (308)
                      ++.+        ....+..++|+|+  .++..+.|+.|++|+....    ++...+.  .+...++. .|+|.|+||+++
T Consensus       175 tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w----e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs  250 (933)
T KOG1274|consen  175 TLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW----ELQFKLRDKLSSSKFSDLQWSPNGKYIAAS  250 (933)
T ss_pred             hcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc----eeheeecccccccceEEEEEcCCCcEEeee
Confidence            2221        1345778999999  8888899999999999886    5555554  33444677 999999999987


Q ss_pred             e-ceEEEEee
Q 021744          291 V-SFIMFIGQ  299 (308)
Q Consensus       291 ~-s~~i~~~~  299 (308)
                      . ...|.+|.
T Consensus       251 ~~~g~I~vWn  260 (933)
T KOG1274|consen  251 TLDGQILVWN  260 (933)
T ss_pred             ccCCcEEEEe
Confidence            7 44444443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=5.3e-18  Score=146.17  Aligned_cols=221  Identities=10%  Similarity=0.095  Sum_probs=180.6

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeee-eeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIK-TDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEG  148 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~  148 (308)
                      ++||+.+.+. |.+-.||.|.+|++...=.......++.. .+..++|.+.++..+.+.+|.|.-||+.+. +++..+..
T Consensus        30 slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l-k~~~~~d~  108 (691)
T KOG2048|consen   30 SLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTL-KQKYNIDS  108 (691)
T ss_pred             EEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccC-ceeEEecC
Confidence            7999998888 99999999999999764332223333333 388888888888899999999999999999 78888888


Q ss_pred             cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe---CCCeeEEEE--cCCCEEEEEc-CCcEEEEEcCCCce
Q 021744          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN---LGGEVGCMI--SEGPWIFIGV-TNFVKAWNTQTNTD  222 (308)
Q Consensus       149 h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~---~~~~v~~~~--~~~~~l~~~~-d~~i~~wd~~~~~~  222 (308)
                      ..+.|++++.+|.+..++.|+.||.+...+...++......   ..+.+.++.  +++..+++|+ ||.|++||..+++.
T Consensus       109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t  188 (691)
T KOG2048|consen  109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT  188 (691)
T ss_pred             CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCce
Confidence            88999999999999999999999988888888887665544   456777773  5677788888 99999999998876


Q ss_pred             ee-----eeC----CCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          223 LS-----LSG----PVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       223 ~~-----~~~----~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      ..     +..    ...-|+++.|..+ .+++|..-|+|.+||...+    .+++.+..|...|.+ +..+++.++++++
T Consensus       189 ~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g----TLiqS~~~h~adVl~Lav~~~~d~vfsaG  264 (691)
T KOG2048|consen  189 LHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG----TLIQSHSCHDADVLALAVADNEDRVFSAG  264 (691)
T ss_pred             EEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc----chhhhhhhhhcceeEEEEcCCCCeEEEcc
Confidence            52     211    2335788988877 9999999999999999997    888999999999999 9999988888766


Q ss_pred             -ceEEE
Q 021744          292 -SFIMF  296 (308)
Q Consensus       292 -s~~i~  296 (308)
                       +..++
T Consensus       265 vd~~ii  270 (691)
T KOG2048|consen  265 VDPKII  270 (691)
T ss_pred             CCCceE
Confidence             44443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.83  E-value=1.6e-18  Score=140.74  Aligned_cols=197  Identities=15%  Similarity=0.191  Sum_probs=154.7

Q ss_pred             CCCccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCC------CcccccceeeeeeeeeeeecCCce--EEeeCC
Q 021744           61 PPAATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSK------NSNINNRAVIKTDILCRNWVQGNC--MYGEKC  128 (308)
Q Consensus        61 ~~~~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d  128 (308)
                      .+...||.+.  .++|+|-...  ||||.|.+|.||++-.+.      .....+.+|...+..+.+.|....  ++++.|
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            3566799999  8999997776  999999999999994322      112345788888999999998733  889999


Q ss_pred             CeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCC--eeEEE-EcCCCEE
Q 021744          129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGG--EVGCM-ISEGPWI  204 (308)
Q Consensus       129 ~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~--~v~~~-~~~~~~l  204 (308)
                      .+|.+|++.++ +.+-++. |.+.|+++.|+.+|.++++.+.|+.|++||.++++.+..-. |++  +...+ ..++.++
T Consensus       154 n~v~iWnv~tg-eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~  231 (472)
T KOG0303|consen  154 NTVSIWNVGTG-EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF  231 (472)
T ss_pred             ceEEEEeccCC-ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence            99999999999 6666677 99999999999999999999999999999999999988875 433  34444 4677766


Q ss_pred             EEEc----CCcEEEEEcCCCcee----eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCC
Q 021744          205 FIGV----TNFVKAWNTQTNTDL----SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTT  260 (308)
Q Consensus       205 ~~~~----d~~i~~wd~~~~~~~----~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~  260 (308)
                      .+|.    +.++.+||....+..    .+.. ++.|.---|.++   ..++|-.|+.|+.|.+....
T Consensus       232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  232 TTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            6663    669999998765432    3333 344554556777   56778889999999998864

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=4.2e-17  Score=124.77  Aligned_cols=229  Identities=11%  Similarity=0.112  Sum_probs=167.5

Q ss_pred             CCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCC--
Q 021744           24 GGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSK--   98 (308)
Q Consensus        24 ~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~--   98 (308)
                      ....+++.|..+|+|-+....+-.....  -...+..-.+.++|.+.  .++|.  ... ++|+ ||.|+-|..+.-.  
T Consensus        20 p~~~~l~agn~~G~iav~sl~sl~s~sa--~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es   94 (325)
T KOG0649|consen   20 PSKQYLFAGNLFGDIAVLSLKSLDSGSA--EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEES   94 (325)
T ss_pred             CcceEEEEecCCCeEEEEEehhhhcccc--CCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhh
Confidence            3456799999999999998654211000  00001112345788888  77887  224 5555 5999999873211  


Q ss_pred             -----Ccccccceee-----eeeeeeeeecCC-ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEE
Q 021744           99 -----NSNINNRAVI-----KTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYS  167 (308)
Q Consensus        99 -----~~~~~~~~~~-----~~~~~~~~~~~~-~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  167 (308)
                           ........+.     -.+..+..-|.. ..++++.|+.++-||++++ +..++++||++-|.++.--.....++|
T Consensus        95 ~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R~~~~qils  173 (325)
T KOG0649|consen   95 LATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG-RIQREYRGHTDYVHSVVGRNANGQILS  173 (325)
T ss_pred             ccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC-EEEEEEcCCcceeeeeeecccCcceee
Confidence                 1111111111     126666666655 5578889999999999999 899999999999999998556678999


Q ss_pred             eeCCCcEEEEeCCCCeEEEEEe---CC--------CeeEEEEcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEE
Q 021744          168 GSKDETVRVWDCASGQCAGVIN---LG--------GEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMA  236 (308)
Q Consensus       168 ~s~dg~v~~wd~~~~~~~~~~~---~~--------~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~  236 (308)
                      |++||++++||.+++++++.+.   ++        ..+.++.-+..+++.|....+.+|.++..++.....-..++..+.
T Consensus       174 G~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v~  253 (325)
T KOG0649|consen  174 GAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLVD  253 (325)
T ss_pred             cCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEecccceeEee
Confidence            9999999999999999998886   11        224566678889998888899999999999886555677889999


Q ss_pred             EeCCEEEEEcCCCeEEEEEcCC
Q 021744          237 VGNDLLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       237 ~~~~~l~~g~~dg~i~iwd~~~  258 (308)
                      |..+.++++++.+.|.-|.+..
T Consensus       254 F~~d~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  254 FVDDCVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             eecceEEEeccccceeeeeecc
Confidence            9988888888888999998875

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.83  E-value=4.8e-19  Score=140.45  Aligned_cols=230  Identities=13%  Similarity=0.141  Sum_probs=166.4

Q ss_pred             EEEeecCCCCCCCC--CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCeeeccCCCc
Q 021744           12 VFHRLGGGGGDGGG--GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWGRNNNFNNH   88 (308)
Q Consensus        12 ~~~~~~~~~~~~~~--~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~~s~~~d~~   88 (308)
                      ||....=+.-.++.  -.++|+.+.|.-|.+||+-++.. .|.|     ...........+ +++|+|||.++-++..+.
T Consensus       107 vydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~l-raSy-----~~ydh~de~taAhsL~Fs~DGeqlfaGykrc  180 (406)
T KOG2919|consen  107 VYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKL-RASY-----RAYDHQDEYTAAHSLQFSPDGEQLFAGYKRC  180 (406)
T ss_pred             EEEEEeeeccccCCCccceeeeccccCceeeeecccccc-ccch-----hhhhhHHhhhhheeEEecCCCCeEeecccce
Confidence            44444443333444  46899999999999999988710 1100     001111112233 899999999988889999


Q ss_pred             EEEEEC-CCCCCccc-c-----cceeeeeeeeeeeecCCc-e-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEe
Q 021744           89 SNNYRA-GNSKNSNI-N-----NRAVIKTDILCRNWVQGN-C-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLP  159 (308)
Q Consensus        89 i~vwd~-~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~-~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~  159 (308)
                      ||++|+ .++.--.. .     ..+....+.+.+|+|... + +.|+....+-||.-... .++..+-+|.+.|+.+.|.
T Consensus       181 irvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~  259 (406)
T KOG2919|consen  181 IRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWC  259 (406)
T ss_pred             EEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCCeeeEEec
Confidence            999999 34432111 1     122233477788998774 3 88888888889887777 7888999999999999999


Q ss_pred             CCCCEEEEeeC-CCcEEEEeCCC-CeEEEEEe-CCC----ee-EEEEcCCCEEEEEc-CCcEEEEEcCC-Ccee-eeeCC
Q 021744          160 SGSDKLYSGSK-DETVRVWDCAS-GQCAGVIN-LGG----EV-GCMISEGPWIFIGV-TNFVKAWNTQT-NTDL-SLSGP  228 (308)
Q Consensus       160 ~~~~~l~s~s~-dg~v~~wd~~~-~~~~~~~~-~~~----~v-~~~~~~~~~l~~~~-d~~i~~wd~~~-~~~~-~~~~~  228 (308)
                      ++|+.|.+|+. |-.|..||++. .+++..+. +..    .| ..+-+++++|++|. +|.|++||+++ +... .+..+
T Consensus       260 edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~  339 (406)
T KOG2919|consen  260 EDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY  339 (406)
T ss_pred             cCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc
Confidence            99999999986 67899999996 45666655 222    12 23358899999996 99999999998 5544 67788


Q ss_pred             CCCEEEEEEeCC--EEEEEcCC
Q 021744          229 VGQVYAMAVGND--LLFAGTQD  248 (308)
Q Consensus       229 ~~~v~~~~~~~~--~l~~g~~d  248 (308)
                      ...++.++++|-  ++++++..
T Consensus       340 sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  340 SDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             cccccceecCcccceeeeccCc
Confidence            999999999999  77777765

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=9.1e-19  Score=138.42  Aligned_cols=192  Identities=17%  Similarity=0.245  Sum_probs=148.2

Q ss_pred             eeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe
Q 021744          111 DILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN  189 (308)
Q Consensus       111 ~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~  189 (308)
                      ..+|.|++-|.+ +.|+.||.|.|||+.|. .+-+.+.+|..+|.+++|+++|++|+|+|.|..|++||+..|.+++.+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF-RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEcccc-chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence            678999999977 88999999999999998 6888899999999999999999999999999999999999998887775


Q ss_pred             CCCeeEEE-------------------------------------------------EcCCCEEEEEc-CCcEEEEEcCC
Q 021744          190 LGGEVGCM-------------------------------------------------ISEGPWIFIGV-TNFVKAWNTQT  219 (308)
Q Consensus       190 ~~~~v~~~-------------------------------------------------~~~~~~l~~~~-d~~i~~wd~~~  219 (308)
                      ...++...                                                 .+.|+++++|. .|.+.++|..+
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t  184 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET  184 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence            33322110                                                 01467888887 88999999999


Q ss_pred             Ccee-eeeCCC-CCEEEEEEeCC--EEEEEcCCCeEEEEEcCCC-----Ccccccceecc---ccCCCeEEEEecCCCeE
Q 021744          220 NTDL-SLSGPV-GQVYAMAVGND--LLFAGTQDGAILAWKFNVT-----TNCFEPAASLK---VHTDSNRAHFSRDVTSL  287 (308)
Q Consensus       220 ~~~~-~~~~~~-~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~-----~~~~~~~~~~~---~~~~~v~~~~s~d~~~l  287 (308)
                      .+++ .+.-.. ..|..+.++..  .|+.-+.|+.|+.|++..-     ....++.+.+.   ....+-.+.||.||.|+
T Consensus       185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv  264 (405)
T KOG1273|consen  185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYV  264 (405)
T ss_pred             heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEE
Confidence            9887 444333 67888888877  8999999999999998621     11112223333   22233344999999999


Q ss_pred             EEee--ceEEEEeecCce
Q 021744          288 LGSV--SFIMFIGQNNKG  303 (308)
Q Consensus       288 ~~s~--s~~i~~~~~~~~  303 (308)
                      +++.  .-.+|+|..+-|
T Consensus       265 ~a~s~~aHaLYIWE~~~G  282 (405)
T KOG1273|consen  265 CAGSARAHALYIWEKSIG  282 (405)
T ss_pred             EeccccceeEEEEecCCc
Confidence            8655  677888875543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.7e-18  Score=136.45  Aligned_cols=238  Identities=9%  Similarity=0.132  Sum_probs=158.1

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEE-ecC-CCe-eeccCCCcEEEEECCCCCCc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRF-ANN-TWG-RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~-s~~-g~~-~s~~~d~~i~vwd~~~~~~~  100 (308)
                      |+..||||.|++++|||.....        ..-.....-+.|.++  .+.| +|+ |+. |++++|++++||.-...+..
T Consensus        25 GRRmAtCSsDq~vkI~d~~~~s--------~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~   96 (361)
T KOG2445|consen   25 GRRMATCSSDQTVKIWDSTSDS--------GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEE   96 (361)
T ss_pred             CceeeeccCCCcEEEEeccCCC--------CceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccc
Confidence            7889999999999999954330        011223344567777  4555 565 666 99999999999986311111


Q ss_pred             c--------cccceeeeeeeeeeeecCC---ceEEeeCCCeEEEEEcCCCc-----eeeeEee-------CcccceEEEE
Q 021744          101 N--------INNRAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDGF-----KLLTQLE-------GHQKVVSGIT  157 (308)
Q Consensus       101 ~--------~~~~~~~~~~~~~~~~~~~---~~~~g~~d~~i~iwd~~~~~-----~~~~~~~-------~h~~~v~~~~  157 (308)
                      .        ..+......+..+.|.|.-   ..++++.||.+|||+..+..     ++..+++       .+..+..|+.
T Consensus        97 ~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cvs  176 (361)
T KOG2445|consen   97 AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVS  176 (361)
T ss_pred             cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEe
Confidence            0        0112223348888888865   23889999999999976442     2222333       4667788999


Q ss_pred             EeCC---CCEEEEeeCC-----CcEEEEeCCCCe-E---EEEEe-CCCeeEEEE--cC----CCEEEEEc-CCcEEEEEc
Q 021744          158 LPSG---SDKLYSGSKD-----ETVRVWDCASGQ-C---AGVIN-LGGEVGCMI--SE----GPWIFIGV-TNFVKAWNT  217 (308)
Q Consensus       158 ~~~~---~~~l~s~s~d-----g~v~~wd~~~~~-~---~~~~~-~~~~v~~~~--~~----~~~l~~~~-d~~i~~wd~  217 (308)
                      |+|.   ..+|+.|+.+     +.++||....+. .   +.++. +..++..++  |+    ..+|++++ || |+||.+
T Consensus       177 Wn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v  255 (361)
T KOG2445|consen  177 WNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKV  255 (361)
T ss_pred             eccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEE
Confidence            9974   3567777765     478899766432 2   22233 778888773  43    34677666 88 999998


Q ss_pred             CCC--------------------cee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccC
Q 021744          218 QTN--------------------TDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT  273 (308)
Q Consensus       218 ~~~--------------------~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~  273 (308)
                      +..                    +.+ .+..|.++|+.+.|+-.  .|++.+.||.|++|...-... +++...++...
T Consensus       256 ~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~-~kC~sv~~~e~  333 (361)
T KOG2445|consen  256 KVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNL-WKCTSVLKAEG  333 (361)
T ss_pred             eeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhh-heeeeEEeccC
Confidence            741                    112 46789999999999877  899999999999998654321 35555555433

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.81  E-value=1.9e-18  Score=149.91  Aligned_cols=220  Identities=11%  Similarity=0.102  Sum_probs=175.1

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEe-cC--CCe-eeccCCCcEEEEECCCCCC
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFA-NN--TWG-RNNNFNNHSNNYRAGNSKN   99 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s-~~--g~~-~s~~~d~~i~vwd~~~~~~   99 (308)
                      +-.+|+|..-|++||++...-            ........|+..  ++.|+ |+  .++ |+++.|.-|.|+|+...-.
T Consensus       471 gqhLAsGDr~GnlrVy~Lq~l------------~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~  538 (1080)
T KOG1408|consen  471 GQHLASGDRGGNLRVYDLQEL------------EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD  538 (1080)
T ss_pred             cceecccCccCceEEEEehhh------------hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence            567899999999999998864            233344577777  88887 33  234 9999999999999976656


Q ss_pred             cccccceeeeeeeeeeeecCC---ceEEeeCCCeEEEEEcCCCceeeeEeeC-----cccceEEEEEeCCCCEEEEeeCC
Q 021744          100 SNINNRAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDGFKLLTQLEG-----HQKVVSGITLPSGSDKLYSGSKD  171 (308)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~---~~~~g~~d~~i~iwd~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~s~s~d  171 (308)
                      +.+.+..|...+..+.|-..|   ..++.+.|+.|..--.+.. ..-..+..     .+..++.|++.|..+++++++.|
T Consensus       539 l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~-~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQD  617 (1080)
T KOG1408|consen  539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKA-SSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQD  617 (1080)
T ss_pred             hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccc-cCceeccccccccccceEEEeeeCCCcceEEEEecc
Confidence            666778888899999998877   3388999998865433211 11111211     24578999999999999999999


Q ss_pred             CcEEEEeCCCCeEEEEEe----CCCe-eEEE-EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--E
Q 021744          172 ETVRVWDCASGQCAGVIN----LGGE-VGCM-ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--L  241 (308)
Q Consensus       172 g~v~~wd~~~~~~~~~~~----~~~~-v~~~-~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~  241 (308)
                      ..|+|||+++++..+.|+    +++. +... -|.+.+++++. |+++.++|.-+++++ ++.+|...|+.+.|.+|  .
T Consensus       618 rnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkH  697 (1080)
T KOG1408|consen  618 RNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKH  697 (1080)
T ss_pred             cceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchh
Confidence            999999999999999998    3333 3333 47899999654 999999999999999 89999999999999999  9


Q ss_pred             EEEEcCCCeEEEEEcCC
Q 021744          242 LFAGTQDGAILAWKFNV  258 (308)
Q Consensus       242 l~~g~~dg~i~iwd~~~  258 (308)
                      |++.+.||.|.+|.+..
T Consensus       698 lISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  698 LISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             heeecCCceEEEEECch
Confidence            99999999999999865

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.81  E-value=1.2e-17  Score=132.56  Aligned_cols=273  Identities=13%  Similarity=0.136  Sum_probs=192.3

Q ss_pred             CCceEEecCCCeEEEeecCCCC--CC-CCCcccccCCCCCCccccccc-eeEE------ecCCCe-eeccCCCcEEEEEC
Q 021744           26 GGLSTADTRQKVCNYWRAGKCN--RF-PCPYLHRELPLPPAATANGAA-AKRF------ANNTWG-RNNNFNNHSNNYRA   94 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~--~~-~~~~~~~~~~~~~~~~gh~~~-~i~~------s~~g~~-~s~~~d~~i~vwd~   94 (308)
                      |+-|.+-+.|..+++|+....-  +. +.+.....++......|-+-- .+++      -|+..+ |+.+.|.-|++||.
T Consensus        61 GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wda  140 (406)
T KOG2919|consen   61 GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDA  140 (406)
T ss_pred             CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeec
Confidence            6779999999999999965431  11 122221111111111111111 3444      377778 99999999999999


Q ss_pred             CCCCCccccc-ceeee---eeeeeeeecCCceEEeeCCCeEEEEEc-CCCce-eeeE-----eeCcccceEEEEEeCCC-
Q 021744           95 GNSKNSNINN-RAVIK---TDILCRNWVQGNCMYGEKCKFLHSWTV-GDGFK-LLTQ-----LEGHQKVVSGITLPSGS-  162 (308)
Q Consensus        95 ~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~g~~d~~i~iwd~-~~~~~-~~~~-----~~~h~~~v~~~~~~~~~-  162 (308)
                      -+++....-. ..|..   ...++.|+|+|..+.++....|+++|+ +.+.. ....     -.+..+-|.+++|+|-. 
T Consensus       141 ftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~  220 (406)
T KOG2919|consen  141 FTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDS  220 (406)
T ss_pred             cccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCC
Confidence            8886432211 22222   267899999999999999999999999 44421 1111     23457889999999954 


Q ss_pred             CEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc--CCcEEEEEcCCCcee--eeeCCCC-CEEE
Q 021744          163 DKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV--TNFVKAWNTQTNTDL--SLSGPVG-QVYA  234 (308)
Q Consensus       163 ~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~--d~~i~~wd~~~~~~~--~~~~~~~-~v~~  234 (308)
                      ..++.++....+-|+.-....++..+- +++-|+-+  ..+|+.|++|.  +..|.+||++.-...  .+..|.. .-..
T Consensus       221 ~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQR  300 (406)
T KOG2919|consen  221 KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQR  300 (406)
T ss_pred             cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccce
Confidence            589999999999999988888888776 77777765  68899999987  779999999976443  5655654 3334


Q ss_pred             EEE--eCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEEEeecC
Q 021744          235 MAV--GND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMFIGQNN  301 (308)
Q Consensus       235 ~~~--~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~~~~~  301 (308)
                      |.|  .|+  +|++|+.||.|++||+....   ..+..+..|...++. +++|-=.+++++..-.+|..+..
T Consensus       301 I~FDld~~~~~LasG~tdG~V~vwdlk~~g---n~~sv~~~~sd~vNgvslnP~mpilatssGqr~f~~~~d  369 (406)
T KOG2919|consen  301 ILFDLDPKGEILASGDTDGSVRVWDLKDLG---NEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIFKYPKD  369 (406)
T ss_pred             EEEecCCCCceeeccCCCccEEEEecCCCC---CcccccccccccccceecCcccceeeeccCceeecCCCc
Confidence            445  455  99999999999999999842   567777788888988 99998667777766666665543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=5.6e-19  Score=134.94  Aligned_cols=194  Identities=16%  Similarity=0.156  Sum_probs=146.5

Q ss_pred             eeeeeeeeeeecCC-ceEEeeCCCeEEEEEcCCCc--eeeeEeeCcccceEEEEEeC--CCCEEEEeeCCCcEEEEeCCC
Q 021744          107 VIKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGF--KLLTQLEGHQKVVSGITLPS--GSDKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       107 ~~~~~~~~~~~~~~-~~~~g~~d~~i~iwd~~~~~--~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~dg~v~~wd~~~  181 (308)
                      |+..+........| ++++++.|++|+|+.++...  +++.+|.||.++|+.++|..  -|..|+++++||.|.||.-++
T Consensus        10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~   89 (299)
T KOG1332|consen   10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN   89 (299)
T ss_pred             hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC
Confidence            44444444433344 45999999999999998663  67889999999999999964  689999999999999999888


Q ss_pred             CeEEEEEe---CCCeeEEEE--cC--CCEEEEEc-CCcEEEEEcCCC-c---eeeeeCCCCCEEEEEEeCC---------
Q 021744          182 GQCAGVIN---LGGEVGCMI--SE--GPWIFIGV-TNFVKAWNTQTN-T---DLSLSGPVGQVYAMAVGND---------  240 (308)
Q Consensus       182 ~~~~~~~~---~~~~v~~~~--~~--~~~l~~~~-d~~i~~wd~~~~-~---~~~~~~~~~~v~~~~~~~~---------  240 (308)
                      ++-.+...   |...+.++.  |.  |-.|++++ ||.|.+.+.+.. .   ......|.-.|++++|.|.         
T Consensus        90 g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~  169 (299)
T KOG1332|consen   90 GRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQ  169 (299)
T ss_pred             CchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccccc
Confidence            75433333   677788773  33  44566554 999999988765 2   2256689999999999873         


Q ss_pred             -------EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCC----CeEEEee-ceEEEEeecCc
Q 021744          241 -------LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDV----TSLLGSV-SFIMFIGQNNK  302 (308)
Q Consensus       241 -------~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~----~~l~~s~-s~~i~~~~~~~  302 (308)
                             .|++|+.|..|+||+..+.+  +..-.++.+|.+.|+. +|.|.-    ..|++++ +..++++..++
T Consensus       170 ~~~~~~krlvSgGcDn~VkiW~~~~~~--w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~  242 (299)
T KOG1332|consen  170 GPAAKVKRLVSGGCDNLVKIWKFDSDS--WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE  242 (299)
T ss_pred             CcccccceeeccCCccceeeeecCCcc--hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence                   49999999999999999874  3666779999999999 999964    2334322 66776665443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.81  E-value=2e-17  Score=145.68  Aligned_cols=266  Identities=17%  Similarity=0.183  Sum_probs=154.8

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCCCccc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      ..+|-|..+|+|.++|...+           ..+.. ++.-.+.  +++|..||..  |+|...|.+.+||++..+....
T Consensus       215 DVVaiG~~~G~ViifNlK~d-----------kil~s-Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v  282 (910)
T KOG1539|consen  215 DVVAIGLENGTVIIFNLKFD-----------KILMS-FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV  282 (910)
T ss_pred             eEEEEeccCceEEEEEcccC-----------cEEEE-EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeee
Confidence            57888999999999998876           11111 1111122  6999999998  8899999999999988776665


Q ss_pred             ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCc---eeeeEeeCcccceEEEEEe-CCCCEEEEeeCCCcEEEE
Q 021744          103 NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGF---KLLTQLEGHQKVVSGITLP-SGSDKLYSGSKDETVRVW  177 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~---~~~~~~~~h~~~v~~~~~~-~~~~~l~s~s~dg~v~~w  177 (308)
                      ....|...+....|.+.... ++++.|+.+++|-.+++.   ..++.-.||..+..++.|. .++..+.+++.|++.+.+
T Consensus       283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~f  362 (910)
T KOG1539|consen  283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSF  362 (910)
T ss_pred             eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhh
Confidence            66667666666666666654 666677766665443221   2233334555555555554 344445555555544443


Q ss_pred             eCCC-----------------------------------------------------------------CeE-EEEEe--
Q 021744          178 DCAS-----------------------------------------------------------------GQC-AGVIN--  189 (308)
Q Consensus       178 d~~~-----------------------------------------------------------------~~~-~~~~~--  189 (308)
                      ++..                                                                 ... ...+.  
T Consensus       363 s~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~  442 (910)
T KOG1539|consen  363 SVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK  442 (910)
T ss_pred             hhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc
Confidence            2210                                                                 000 00000  


Q ss_pred             ------CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-ee---eCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEc
Q 021744          190 ------LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SL---SGPVGQVYAMAVGND--LLFAGTQDGAILAWKF  256 (308)
Q Consensus       190 ------~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~---~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~  256 (308)
                            ......|+++.|++.+.|. .|.|.+|++.+|-.. .+   ..|..+|+.++...-  .+++++.+|.+++||+
T Consensus       443 ~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f  522 (910)
T KOG1539|consen  443 RFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDF  522 (910)
T ss_pred             cccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEec
Confidence                  1123344455555555554 455555555555443 22   345555555555443  4555555555555554


Q ss_pred             CCCCc-------------------------------------ccccceeccccCCCeEE-EEecCCCeEEEee---ceEE
Q 021744          257 NVTTN-------------------------------------CFEPAASLKVHTDSNRA-HFSRDVTSLLGSV---SFIM  295 (308)
Q Consensus       257 ~~~~~-------------------------------------~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~---s~~i  295 (308)
                      .....                                     ..+.++.+.+|.+.++. +|||||++|++++   ++.+
T Consensus       523 ~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~  602 (910)
T KOG1539|consen  523 KKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRT  602 (910)
T ss_pred             CCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEE
Confidence            43220                                     01556778899999999 9999999999666   4455


Q ss_pred             EEeecCcee
Q 021744          296 FIGQNNKGV  304 (308)
Q Consensus       296 ~~~~~~~~~  304 (308)
                      |-......+
T Consensus       603 wDlpt~~lI  611 (910)
T KOG1539|consen  603 WDLPTGTLI  611 (910)
T ss_pred             EeccCccee
Confidence            544444433

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.80  E-value=8.8e-18  Score=133.53  Aligned_cols=225  Identities=15%  Similarity=0.230  Sum_probs=161.9

Q ss_pred             eeEEecC----CCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC--ceEEeeCCCeEEEEEcCCCceee
Q 021744           71 AKRFANN----TWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLL  143 (308)
Q Consensus        71 ~i~~s~~----g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~~~~~~~  143 (308)
                      .++++-+    ..+ |.|+.-|.|||.|+.+++.. ....+|...+..+.+.|+.  ..+++++|..|++|++++. .++
T Consensus        94 tcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~-~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~-~Cv  171 (385)
T KOG1034|consen   94 TCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS-KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD-VCV  171 (385)
T ss_pred             EEEEEecCCCCCeeEEeecceeEEEEEecchhhhc-cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC-eEE
Confidence            5666543    224 88889999999999877554 3667888899999999998  3499999999999999998 666


Q ss_pred             eEe---eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe------CC-----------------------
Q 021744          144 TQL---EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN------LG-----------------------  191 (308)
Q Consensus       144 ~~~---~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~------~~-----------------------  191 (308)
                      ..+   .||.+.|.++.|++++.+++||+.|.++++|++...+....++      .+                       
T Consensus       172 ~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr  251 (385)
T KOG1034|consen  172 AVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR  251 (385)
T ss_pred             EEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc
Confidence            554   6799999999999999999999999999999998543222111      00                       


Q ss_pred             CeeEEEEcCCCEEEE-EcCCcEEEEEcCC-Cce-------------e-eeeCCCCCEEEEEEeCC----EEEEEcCCCeE
Q 021744          192 GEVGCMISEGPWIFI-GVTNFVKAWNTQT-NTD-------------L-SLSGPVGQVYAMAVGND----LLFAGTQDGAI  251 (308)
Q Consensus       192 ~~v~~~~~~~~~l~~-~~d~~i~~wd~~~-~~~-------------~-~~~~~~~~v~~~~~~~~----~l~~g~~dg~i  251 (308)
                      ..+.|+-.=|.++++ +.++.|..|-... .+.             . ++.-....++-+.|.=|    .||.|.+.|.|
T Consensus       252 nyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v  331 (385)
T KOG1034|consen  252 NYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKV  331 (385)
T ss_pred             chHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcE
Confidence            011111012456665 4488999997621 111             1 33444556777777655    89999999999


Q ss_pred             EEEEcCCCCcccccceecc--ccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          252 LAWKFNVTTNCFEPAASLK--VHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       252 ~iwd~~~~~~~~~~~~~~~--~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      .+||++...+  ....++.  .....|+. +||.|+..|+.-+ +..+|-+.
T Consensus       332 ~vwdL~~~ep--~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  332 YVWDLDNNEP--PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             EEEECCCCCC--ccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence            9999998643  1222332  23457888 9999999998655 77777664

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=4.5e-17  Score=128.48  Aligned_cols=185  Identities=15%  Similarity=0.185  Sum_probs=142.7

Q ss_pred             eeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEE
Q 021744          107 VIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA  185 (308)
Q Consensus       107 ~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~  185 (308)
                      .+..+..+.|++.+.. +.++.||.+++||+... .....++ |..++.+++|.+ ...+++|+.||.|+.+|+++++..
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~-~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~   88 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN-SLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED   88 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch-hhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce
Confidence            4455888999987754 88889999999999887 5555555 899999999986 568999999999999999999988


Q ss_pred             EEEeCCCeeEEEE--cCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcCCCCcc
Q 021744          186 GVINLGGEVGCMI--SEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNC  262 (308)
Q Consensus       186 ~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~  262 (308)
                      ..-.|...+.|+.  +....+++|+ |++|++||.+.....--......|.++....+.|+.|+.|..|.+||+++..  
T Consensus        89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~--  166 (323)
T KOG1036|consen   89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD--  166 (323)
T ss_pred             eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEccccc--
Confidence            8888999999984  3355566665 9999999999855552223344899999999999999999999999999863  


Q ss_pred             cccceec-cccCCCeEE-EEecCCC-eEEEeeceEEEE
Q 021744          263 FEPAASL-KVHTDSNRA-HFSRDVT-SLLGSVSFIMFI  297 (308)
Q Consensus       263 ~~~~~~~-~~~~~~v~~-~~s~d~~-~l~~s~s~~i~~  297 (308)
                       .+.+.. ..-.-.+++ ++-|++. ++++|.+..+.+
T Consensus       167 -~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVav  203 (323)
T KOG1036|consen  167 -EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAV  203 (323)
T ss_pred             -chhhhccccceeEEEEEEEecCCCceEEEeecceEEE
Confidence             222211 133456777 6667554 555666666655

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.78  E-value=7e-17  Score=131.70  Aligned_cols=255  Identities=15%  Similarity=0.147  Sum_probs=177.2

Q ss_pred             ceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC-----
Q 021744           28 LSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN-----   99 (308)
Q Consensus        28 ~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~-----   99 (308)
                      .+|||+.|..||+|......-..--   ........+..|..+  +++|+|+|.. |||+.+++|.+|-...-++     
T Consensus        28 ~laT~G~D~~iriW~v~r~~~~~~~---~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~  104 (434)
T KOG1009|consen   28 KLATAGGDKDIRIWKVNRSEPGGGD---MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADT  104 (434)
T ss_pred             ceecccCccceeeeeeeecCCCCCc---eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccc
Confidence            7999999999999987765110000   000112345577777  8999999999 9999999999998762111     


Q ss_pred             ----------cccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEe
Q 021744          100 ----------SNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG  168 (308)
Q Consensus       100 ----------~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  168 (308)
                                .....++|...+..+++++++.+ ++++-|+.+++||+..+ +....+.+|...|..++|.|-++++++-
T Consensus       105 e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G-~l~~~~~dh~~yvqgvawDpl~qyv~s~  183 (434)
T KOG1009|consen  105 EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG-QLLAILDDHEHYVQGVAWDPLNQYVASK  183 (434)
T ss_pred             hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc-eeEeeccccccccceeecchhhhhhhhh
Confidence                      11123456667888999999977 89999999999999999 8999999999999999999999999999


Q ss_pred             eCCCcEEEEeCCCCeEEEEEe-----------CCCeeE---------------EEEcCCCEEEEE--c---CC-----cE
Q 021744          169 SKDETVRVWDCASGQCAGVIN-----------LGGEVG---------------CMISEGPWIFIG--V---TN-----FV  212 (308)
Q Consensus       169 s~dg~v~~wd~~~~~~~~~~~-----------~~~~v~---------------~~~~~~~~l~~~--~---d~-----~i  212 (308)
                      +.|...+.+.+...+.+....           .++...               ++.|+|.++++.  .   .+     ..
T Consensus       184 s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~t  263 (434)
T KOG1009|consen  184 SSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTS  263 (434)
T ss_pred             ccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeecee
Confidence            999988888777654433221           111111               224678777742  1   22     33


Q ss_pred             EEEEcCCCc--eeeeeCCCCCEEEEEEeC------------------C--EEEEEcCCCeEEEEEcCCCCcccccceecc
Q 021744          213 KAWNTQTNT--DLSLSGPVGQVYAMAVGN------------------D--LLFAGTQDGAILAWKFNVTTNCFEPAASLK  270 (308)
Q Consensus       213 ~~wd~~~~~--~~~~~~~~~~v~~~~~~~------------------~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~  270 (308)
                      ++|+-+...  ...+.....++..+.++|                  -  .+|.++. ..|++||.++.    .++....
T Consensus       264 Yvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~----~P~~~v~  338 (434)
T KOG1009|consen  264 YVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTL----EPLAVVD  338 (434)
T ss_pred             EeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccc----cceEEEe
Confidence            455433221  114444444555555544                  2  4556655 48999999886    5555443


Q ss_pred             -ccCCCeEE-EEecCCCeEEEee
Q 021744          271 -VHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       271 -~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                       -|-..++. +|++||.+|+.|+
T Consensus       339 nihy~~iTDiaws~dg~~l~vSS  361 (434)
T KOG1009|consen  339 NIHYSAITDIAWSDDGSVLLVSS  361 (434)
T ss_pred             eeeeeeecceeecCCCcEEEEec
Confidence             57888999 9999999998665

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1.2e-16  Score=126.65  Aligned_cols=256  Identities=9%  Similarity=0.064  Sum_probs=177.1

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      |.++|.|..||.|-+||..+.            .....+.+|..+  +++||++|.. +|+|.|..|.+||+-.+.++  
T Consensus        35 G~~lAvGc~nG~vvI~D~~T~------------~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l--  100 (405)
T KOG1273|consen   35 GDYLAVGCANGRVVIYDFDTF------------RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL--  100 (405)
T ss_pred             cceeeeeccCCcEEEEEcccc------------chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce--
Confidence            678999999999999999887            234456678777  8999999999 99999999999999888655  


Q ss_pred             ccceeeeeeeeeeeecCCc--eEEeeCCCeEEEEEcCCCceeeeEee--Cc-ccceEEEEEeCCCCEEEEeeCCCcEEEE
Q 021744          103 NNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLE--GH-QKVVSGITLPSGSDKLYSGSKDETVRVW  177 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~iwd~~~~~~~~~~~~--~h-~~~v~~~~~~~~~~~l~s~s~dg~v~~w  177 (308)
                      ....+...+..+.|.|...  ++..--+..-.+-++..+....-...  +. ...-.+..|++.|+++++|...|.+.++
T Consensus       101 ~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~  180 (405)
T KOG1273|consen  101 KRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY  180 (405)
T ss_pred             eEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEE
Confidence            4455666788899988763  33333333334444443311110000  00 0111233588999999999999999999


Q ss_pred             eCCCCeEEEEEeCC--CeeEEE--EcCCCEEEEEc-CCcEEEEEcCCC-------cee---eee--CCCCCEEEEEEeCC
Q 021744          178 DCASGQCAGVINLG--GEVGCM--ISEGPWIFIGV-TNFVKAWNTQTN-------TDL---SLS--GPVGQVYAMAVGND  240 (308)
Q Consensus       178 d~~~~~~~~~~~~~--~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~-------~~~---~~~--~~~~~v~~~~~~~~  240 (308)
                      |.++.+++..++..  ..+..+  ...+++++... |..|+.|+++.-       +..   .+.  -..-+-.+++|+.+
T Consensus       181 ~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d  260 (405)
T KOG1273|consen  181 DAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD  260 (405)
T ss_pred             ecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence            99999999888833  344444  45688888755 999999998621       111   111  11224467889988


Q ss_pred             --EEEEEc-CCCeEEEEEcCCCCcccccceeccccCCC-eEE-EEecCCCeEEEeeceEEEEee
Q 021744          241 --LLFAGT-QDGAILAWKFNVTTNCFEPAASLKVHTDS-NRA-HFSRDVTSLLGSVSFIMFIGQ  299 (308)
Q Consensus       241 --~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-v~~-~~s~d~~~l~~s~s~~i~~~~  299 (308)
                        ++++++ ....++||.-..+    .+++.+++..+. ... .|.|-...+++-.+..+++|.
T Consensus       261 geYv~a~s~~aHaLYIWE~~~G----sLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~  320 (405)
T KOG1273|consen  261 GEYVCAGSARAHALYIWEKSIG----SLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWA  320 (405)
T ss_pred             ccEEEeccccceeEEEEecCCc----ceeeeecCCchhheeecccccceeeeeeccCCceEEEE
Confidence              555444 4667999999988    888888887743 344 898887777755566666654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=8.6e-17  Score=128.55  Aligned_cols=261  Identities=17%  Similarity=0.147  Sum_probs=165.7

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecC-CCe--eeccCCCcEEEEECCCCCCc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANN-TWG--RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~-g~~--~s~~~d~~i~vwd~~~~~~~  100 (308)
                      -+.+|++-+.++||++|..++            .....+.+|...  .++|..+ +.+  .+|+.||+||+||+...+..
T Consensus        40 e~~vav~lSngsv~lyd~~tg------------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~  107 (376)
T KOG1188|consen   40 ETAVAVSLSNGSVRLYDKGTG------------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES  107 (376)
T ss_pred             ceeEEEEecCCeEEEEeccch------------hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh
Confidence            367899999999999999887            122333444444  5788764 444  89999999999999654332


Q ss_pred             -ccccceeeeee-eeeeeecCCce-EEee----CCCeEEEEEcCCCceeeeEe-eCcccceEEEEEeCC-CCEEEEeeCC
Q 021744          101 -NINNRAVIKTD-ILCRNWVQGNC-MYGE----KCKFLHSWTVGDGFKLLTQL-EGHQKVVSGITLPSG-SDKLYSGSKD  171 (308)
Q Consensus       101 -~~~~~~~~~~~-~~~~~~~~~~~-~~g~----~d~~i~iwd~~~~~~~~~~~-~~h~~~v~~~~~~~~-~~~l~s~s~d  171 (308)
                       ......+.... .+......+.. ..|.    .+-.|.+||++..+++++.+ ..|.+.|+++.|+|. .++|+|||.|
T Consensus       108 a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD  187 (376)
T KOG1188|consen  108 ARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD  187 (376)
T ss_pred             hheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence             22222233222 22222222333 3332    36789999999885545554 569999999999995 5789999999


Q ss_pred             CcEEEEeCCCC----eEEEEEeCCCeeEEE-E-cCC--CEEEEEcCCcEEEEEcCCCcee-eeeCC------------CC
Q 021744          172 ETVRVWDCASG----QCAGVINLGGEVGCM-I-SEG--PWIFIGVTNFVKAWNTQTNTDL-SLSGP------------VG  230 (308)
Q Consensus       172 g~v~~wd~~~~----~~~~~~~~~~~v~~~-~-~~~--~~l~~~~d~~i~~wd~~~~~~~-~~~~~------------~~  230 (308)
                      |.|.++|++..    ..+.++.+...|.++ + .++  ++.......+..+|+++.+.+. .+...            ..
T Consensus       188 GLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~d  267 (376)
T KOG1188|consen  188 GLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCD  267 (376)
T ss_pred             ceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhh
Confidence            99999999853    344556677766665 3 444  4444667999999999887644 22111            11


Q ss_pred             CEEEEEEeCC----EEEEEcCCCeEEEEEcCC--CCcccccceeccc-cCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          231 QVYAMAVGND----LLFAGTQDGAILAWKFNV--TTNCFEPAASLKV-HTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       231 ~v~~~~~~~~----~l~~g~~dg~i~iwd~~~--~~~~~~~~~~~~~-~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      .+.... +|.    ..+.|+.-+...++-+..  .....+.+..+.+ |...|+. .|...+.++.+++ +..+.+|.
T Consensus       268 Y~I~~~-~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  268 YVINEH-SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK  344 (376)
T ss_pred             heeecc-cCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence            222221 232    334444356666655442  2222355566665 6777888 8877777777666 66666665

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=4.1e-17  Score=143.66  Aligned_cols=256  Identities=9%  Similarity=0.015  Sum_probs=160.9

Q ss_pred             CceeEEEeecCCCCCCCCCCceEEec----CCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-
Q 021744            8 GNKRVFHRLGGGGGDGGGGGLSTADT----RQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-   80 (308)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~s~s----~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-   80 (308)
                      ...+|+..+.+..+..+.-=.+++..    .+..|++||.+..+             ...+..|...  ..+|+|||+. 
T Consensus       152 ~~d~i~~~ltg~~g~f~~ria~v~~~~~~~~~~~i~i~d~dg~~-------------~~~lt~~~~~v~~p~wSPDG~~l  218 (429)
T PRK01742        152 VSDEVFEKLTAIRGAFRTRIAYVVQKNGGSQPYEVRVADYDGFN-------------QFIVNRSSQPLMSPAWSPDGSKL  218 (429)
T ss_pred             HHHHHHHHHcCCCCccCCEEEEEEEEcCCCceEEEEEECCCCCC-------------ceEeccCCCccccceEcCCCCEE
Confidence            34455555666554433321122221    24799999987651             1112223322  6899999998 


Q ss_pred             eeccCC---CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEe-eCCCeEEEE--EcCCCceeeeEeeCcccce
Q 021744           81 RNNNFN---NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYG-EKCKFLHSW--TVGDGFKLLTQLEGHQKVV  153 (308)
Q Consensus        81 ~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g-~~d~~i~iw--d~~~~~~~~~~~~~h~~~v  153 (308)
                      +..+.+   .+|.+||+.+++...  ............|+|+|.. +++ ..+|.+.||  |+.++ + ...+..+...+
T Consensus       219 a~~s~~~~~~~i~i~dl~tg~~~~--l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~-~-~~~lt~~~~~~  294 (429)
T PRK01742        219 AYVSFENKKSQLVVHDLRSGARKV--VASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG-T-PSQLTSGAGNN  294 (429)
T ss_pred             EEEEecCCCcEEEEEeCCCCceEE--EecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCC-C-eEeeccCCCCc
Confidence            666543   469999998764321  1111222345789999975 444 467765555  66555 2 45566677788


Q ss_pred             EEEEEeCCCCEEEEee-CCCcEEEEeCCCC-eEEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCC
Q 021744          154 SGITLPSGSDKLYSGS-KDETVRVWDCASG-QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQ  231 (308)
Q Consensus       154 ~~~~~~~~~~~l~s~s-~dg~v~~wd~~~~-~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~  231 (308)
                      ....|+||++.|+..+ .++...+|++... .....+.+......++|+++.|+......+.+||+.+++...+... ..
T Consensus       295 ~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~-~~  373 (429)
T PRK01742        295 TEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSST-FL  373 (429)
T ss_pred             CCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCC-CC
Confidence            8999999999876554 5788888876532 2222233222223357899998876645677799998876644322 13


Q ss_pred             EEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecC
Q 021744          232 VYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRD  283 (308)
Q Consensus       232 v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d  283 (308)
                      ..++.|+|+  .|+.++.++.+.+|++.....  +.+..+..|...+.. +|+|-
T Consensus       374 ~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G--~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        374 DESPSISPNGIMIIYSSTQGLGKVLQLVSADG--RFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCCceECCCCCEEEEEEcCCCceEEEEEECCC--CceEEccCCCCCCCCcccCCC
Confidence            356789999  888888889888887643221  667778788887887 99874

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.75  E-value=1.4e-16  Score=131.81  Aligned_cols=221  Identities=10%  Similarity=0.027  Sum_probs=159.4

Q ss_pred             eeEEecCCCe---eeccCCCcEEEEECCCCCCccc---ccceeeeeeeeeeeecCCc--eEEeeCCCeEEEEEcCCCc-e
Q 021744           71 AKRFANNTWG---RNNNFNNHSNNYRAGNSKNSNI---NNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGF-K  141 (308)
Q Consensus        71 ~i~~s~~g~~---~s~~~d~~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~iwd~~~~~-~  141 (308)
                      +++|+|..+.   |+|...|+|-+||+.+.+....   .-..|...|..+.|+|.+.  .++.+.||+|++-|++... +
T Consensus       191 ~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e  270 (498)
T KOG4328|consen  191 SLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE  270 (498)
T ss_pred             EEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhH
Confidence            8999998773   8888999999999953332211   2245666799999999883  4889999999999998762 2


Q ss_pred             eeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeE-EEEEe-CCCeeEEEE--cC-CCEEEEEc-CCcEEEE
Q 021744          142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC-AGVIN-LGGEVGCMI--SE-GPWIFIGV-TNFVKAW  215 (308)
Q Consensus       142 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~-~~~~~-~~~~v~~~~--~~-~~~l~~~~-d~~i~~w  215 (308)
                      .+..+......+..+.|+.+...++.+..=|...+||++++.. ...+. |...|..+.  |- ..+|++++ |++.++|
T Consensus       271 ~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIW  350 (498)
T KOG4328|consen  271 EVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIW  350 (498)
T ss_pred             HHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeee
Confidence            2233333456678888998888888888888999999998655 44444 666777774  32 45666666 9999999


Q ss_pred             EcCCCce-----eeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecc------ccCCCeEEEEec
Q 021744          216 NTQTNTD-----LSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK------VHTDSNRAHFSR  282 (308)
Q Consensus       216 d~~~~~~-----~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~v~~~~s~  282 (308)
                      |++....     +....|...|.++.|||+  .|++.+.|..|+|||..--.....+..++.      .|-.+..++|.|
T Consensus       351 D~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P  430 (498)
T KOG4328|consen  351 DLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDP  430 (498)
T ss_pred             ehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCC
Confidence            9986432     345679999999999999  999999999999999841111023344333      122334449999


Q ss_pred             CCCeEEEee
Q 021744          283 DVTSLLGSV  291 (308)
Q Consensus       283 d~~~l~~s~  291 (308)
                      +..+++++.
T Consensus       431 ~~~li~vg~  439 (498)
T KOG4328|consen  431 DYNLIVVGR  439 (498)
T ss_pred             CccEEEEec
Confidence            888887655

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=6e-17  Score=138.09  Aligned_cols=260  Identities=11%  Similarity=0.094  Sum_probs=179.3

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe--eeccCCCcEEEEECCCCC----
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG--RNNNFNNHSNNYRAGNSK----   98 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~--~s~~~d~~i~vwd~~~~~----   98 (308)
                      .|..||+|+.||++|+|.+.++   .|-..   .+..    + .-.+++|+|.+..  +.++.+..+.|-+..-|.    
T Consensus       411 ~G~wlasGsdDGtvriWEi~Tg---Rcvr~---~~~d----~-~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~  479 (733)
T KOG0650|consen  411 SGEWLASGSDDGTVRIWEIATG---RCVRT---VQFD----S-EIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEV  479 (733)
T ss_pred             CcceeeecCCCCcEEEEEeecc---eEEEE---Eeec----c-eeEEEEecCCCCceeEEEEecCceEEeCccccchhhh
Confidence            4778999999999999998887   12111   1111    1 1117889988877  444444445554442221    


Q ss_pred             -----------------------------Ccc---cccceeeeeeeeeeeecCCce-EE---eeCCCeEEEEEcCCCcee
Q 021744           99 -----------------------------NSN---INNRAVIKTDILCRNWVQGNC-MY---GEKCKFLHSWTVGDGFKL  142 (308)
Q Consensus        99 -----------------------------~~~---~~~~~~~~~~~~~~~~~~~~~-~~---g~~d~~i~iwd~~~~~~~  142 (308)
                                                   ...   .....|.+.+..+.++-.|.+ ++   .+....|.|+++... ..
T Consensus       480 ~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~-~s  558 (733)
T KOG0650|consen  480 GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR-KS  558 (733)
T ss_pred             cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccc-cc
Confidence                                         000   011223344677788888866 22   234567889998766 34


Q ss_pred             eeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCC-eeEEE--EcCCCEEEEEc-CCcEEEEEcC
Q 021744          143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG-EVGCM--ISEGPWIFIGV-TNFVKAWNTQ  218 (308)
Q Consensus       143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~-~v~~~--~~~~~~l~~~~-d~~i~~wd~~  218 (308)
                      ...|+...+.|.++.|+|...+|+.++. ..|++||+...+.++++.... .+..+  .+.|..|++|+ |+.+.+||+.
T Consensus       559 Q~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDld  637 (733)
T KOG0650|consen  559 QSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLD  637 (733)
T ss_pred             cCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcc
Confidence            4556556788999999999888887776 689999999877777666443 34444  46777777766 9999999987


Q ss_pred             CCc--eeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCC-----CcccccceeccccCCC----eEE-EEecCC
Q 021744          219 TNT--DLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT-----TNCFEPAASLKVHTDS----NRA-HFSRDV  284 (308)
Q Consensus       219 ~~~--~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~----v~~-~~s~d~  284 (308)
                      -..  .+++..|...+++++|++.  +|++|+.||++.||.-.--     .+..-+++.+.+|...    |.. .|+|..
T Consensus       638 lsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~q  717 (733)
T KOG0650|consen  638 LSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQ  717 (733)
T ss_pred             cCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCC
Confidence            663  3378899999999999999  9999999999999964321     1224567778888765    777 999999


Q ss_pred             CeEEEee-ceEEEE
Q 021744          285 TSLLGSV-SFIMFI  297 (308)
Q Consensus       285 ~~l~~s~-s~~i~~  297 (308)
                      .+|++++ +..|-+
T Consensus       718 pWLfsAGAd~tirl  731 (733)
T KOG0650|consen  718 PWLFSAGADGTIRL  731 (733)
T ss_pred             ceEEecCCCceEEe
Confidence            9999766 445443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=1.7e-16  Score=135.43  Aligned_cols=229  Identities=10%  Similarity=0.112  Sum_probs=169.9

Q ss_pred             ccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCC----------
Q 021744           64 ATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKC----------  128 (308)
Q Consensus        64 ~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d----------  128 (308)
                      ++||++.  +|...|.|.. |+|+.||+||||.+.++..+  ........+.+++|.|.+..  +....+          
T Consensus       396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv--r~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~  473 (733)
T KOG0650|consen  396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV--RTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF  473 (733)
T ss_pred             EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE--EEEeecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence            3599999  8999999999 99999999999999999776  33344456888899888743  222222          


Q ss_pred             -----------------------CeEEEEEcCCC---ceeeeEeeCcccceEEEEEeCCCCEEEEeeCC---CcEEEEeC
Q 021744          129 -----------------------KFLHSWTVGDG---FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDC  179 (308)
Q Consensus       129 -----------------------~~i~iwd~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~v~~wd~  179 (308)
                                             +.+..|.-...   ..-++..-.|...|..+.|+..|.+|++...+   ..|.|+++
T Consensus       474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL  553 (733)
T KOG0650|consen  474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL  553 (733)
T ss_pred             cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence                                   22333332211   01122333588999999999999999988664   47889998


Q ss_pred             CCCeEEEEEe-CCCeeEEE--EcCCCEEEEEcCCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEE
Q 021744          180 ASGQCAGVIN-LGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILA  253 (308)
Q Consensus       180 ~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~i  253 (308)
                      ........|. ..+.+.++  .|...+|++++...|++||+..++.. .+......|.+++++|.  .|+.|+.|+.+..
T Consensus       554 SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~W  633 (733)
T KOG0650|consen  554 SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCW  633 (733)
T ss_pred             ccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEE
Confidence            8766655554 44445444  46677899999999999999987766 56666779999999996  8999999999999


Q ss_pred             EEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEE
Q 021744          254 WKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFI  297 (308)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~  297 (308)
                      ||+.-..   ++.+++.-|...++. +|++--.++++++ +..+++
T Consensus       634 fDldlss---kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~V  676 (733)
T KOG0650|consen  634 FDLDLSS---KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIV  676 (733)
T ss_pred             EEcccCc---chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEE
Confidence            9998753   788899999999999 9988766666544 344433

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.73  E-value=9.7e-15  Score=127.53  Aligned_cols=250  Identities=20%  Similarity=0.325  Sum_probs=179.4

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccc--cc-eeEE-ecCCC-e-ee-ccCCCcEEEEECCCC
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANG--AA-AKRF-ANNTW-G-RN-NNFNNHSNNYRAGNS   97 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~--~~-~i~~-s~~g~-~-~s-~~~d~~i~vwd~~~~   97 (308)
                      .+..++.++.|+.+.+|+.....           .....+.++.  .. .+.+ ++++. . +. ...|+.+++|+....
T Consensus        76 ~~~~~~~~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  144 (466)
T COG2319          76 DGELLLSGSSDGTIKLWDLDNGE-----------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP  144 (466)
T ss_pred             CCcEEEEecCCCcEEEEEcCCCc-----------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCC
Confidence            35667888899999999987761           0111111211  11 3344 78887 4 44 445999999999762


Q ss_pred             CCcccccceeeeeeeeeeeecCCce-EEeeC-CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCC-EEEEeeCCCcE
Q 021744           98 KNSNINNRAVIKTDILCRNWVQGNC-MYGEK-CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETV  174 (308)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~-d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~v  174 (308)
                      .........|...+..+.+.+++.. +.++. |+.+++|++.+. ..+..+.+|...|.+++|+|++. .+++++.|+.|
T Consensus       145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  223 (466)
T COG2319         145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI  223 (466)
T ss_pred             CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC-ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcE
Confidence            2222345666677889999999965 66664 999999999986 67888888999999999999987 56666999999


Q ss_pred             EEEeCCCCeEEE-EEe-CCCe-eEEEEcCCCEEEEEc-CCcEEEEEcCCCce-e-eeeCCCCCEEEEEEeCC--EEEEEc
Q 021744          175 RVWDCASGQCAG-VIN-LGGE-VGCMISEGPWIFIGV-TNFVKAWNTQTNTD-L-SLSGPVGQVYAMAVGND--LLFAGT  246 (308)
Q Consensus       175 ~~wd~~~~~~~~-~~~-~~~~-v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~-~-~~~~~~~~v~~~~~~~~--~l~~g~  246 (308)
                      ++||...++.+. .+. +... +..+.+++.+++++. ++.+++||++.... . .+..|...+.++.|.|+  .+++++
T Consensus       224 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  303 (466)
T COG2319         224 RLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS  303 (466)
T ss_pred             EEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee
Confidence            999999777777 454 3333 335567776777555 99999999997764 3 44678899999999995  666688


Q ss_pred             CCCeEEEEEcCCCCcccccceec--cccCCCeEE-EEecCCCeEEEe
Q 021744          247 QDGAILAWKFNVTTNCFEPAASL--KVHTDSNRA-HFSRDVTSLLGS  290 (308)
Q Consensus       247 ~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~v~~-~~s~d~~~l~~s  290 (308)
                      .|+.+.+||....    ......  ..|...+.. .|.+++..++.+
T Consensus       304 ~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (466)
T COG2319         304 SDGTVRLWDLETG----KLLSSLTLKGHEGPVSSLSFSPDGSLLVSG  346 (466)
T ss_pred             CCCcEEEEEcCCC----ceEEEeeecccCCceEEEEECCCCCEEEEe
Confidence            8889999988876    333333  367776777 774332455544

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=6.7e-17  Score=136.87  Aligned_cols=205  Identities=19%  Similarity=0.245  Sum_probs=155.0

Q ss_pred             Cccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCC---Cc----ccccceeeeeeeeeeeecCCce-EEeeCCCeE
Q 021744           63 AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSK---NS----NINNRAVIKTDILCRNWVQGNC-MYGEKCKFL  131 (308)
Q Consensus        63 ~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i  131 (308)
                      .++.|...  .++|.|.... ++++.|++|++|++....   ..    .-..++|+.+|.++.+...+.. .+|+.||+|
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence            44566555  7889999888 999999999999993211   11    1134678888999999988854 999999999


Q ss_pred             EEEEcCCC---------ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe----CCC------
Q 021744          132 HSWTVGDG---------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN----LGG------  192 (308)
Q Consensus       132 ~iwd~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~----~~~------  192 (308)
                      +.|++...         ......+.||++.|+.+++++....|++|+.||+|++|+.....+ .++.    +.-      
T Consensus       369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~  447 (577)
T KOG0642|consen  369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR  447 (577)
T ss_pred             eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence            99965421         134567889999999999999988999999999999998776544 1111    000      


Q ss_pred             -------------------------------------------ee-EEEE-cCCCEEEEEc-CCcEEEEEcCCCcee-ee
Q 021744          193 -------------------------------------------EV-GCMI-SEGPWIFIGV-TNFVKAWNTQTNTDL-SL  225 (308)
Q Consensus       193 -------------------------------------------~v-~~~~-~~~~~l~~~~-d~~i~~wd~~~~~~~-~~  225 (308)
                                                                 .+ ..++ +...+.+++. |+.|+++|..++.++ ..
T Consensus       448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~  527 (577)
T KOG0642|consen  448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM  527 (577)
T ss_pred             ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe
Confidence                                                       00 0111 2344555555 889999999999988 78


Q ss_pred             eCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecccc
Q 021744          226 SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH  272 (308)
Q Consensus       226 ~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  272 (308)
                      ..|...++++++.|+  +|++++.|+.+++|.+..+    .++.....|
T Consensus       528 ~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k----~~~~es~~~  572 (577)
T KOG0642|consen  528 VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK----TCVLESTAH  572 (577)
T ss_pred             eeccceecceeecCCCceEEeecCCceeehhhccch----heeeccccc
Confidence            889999999999999  9999999999999999875    555555444

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=3.3e-16  Score=141.47  Aligned_cols=234  Identities=14%  Similarity=0.125  Sum_probs=156.8

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      ..++.+++.||.||||+.......+.+....-.++..-..+..+.  -+.|.....+ ++++.-..|||||.+..+....
T Consensus      1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred             hhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEee
Confidence            468999999999999986544222222222222222222222222  4566666666 6666688999999975543322


Q ss_pred             ccceeeeeeeeeee-ecCCce-EEeeCCCeEEEEEcCCCc--eeeeEeeCcccc--eEEEEEeCCC-CEEEEeeCCCcEE
Q 021744          103 NNRAVIKTDILCRN-WVQGNC-MYGEKCKFLHSWTVGDGF--KLLTQLEGHQKV--VSGITLPSGS-DKLYSGSKDETVR  175 (308)
Q Consensus       103 ~~~~~~~~~~~~~~-~~~~~~-~~g~~d~~i~iwd~~~~~--~~~~~~~~h~~~--v~~~~~~~~~-~~l~s~s~dg~v~  175 (308)
                      ........+..+.- .+.|+. +.|..||.|++||.+...  ..+...+.|.+.  |..+.+.+.| ..|++|+.||.|+
T Consensus      1203 iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~ 1282 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQ 1282 (1387)
T ss_pred             cccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEE
Confidence            22222222333332 233444 889999999999987542  357778889887  9999999866 4599999999999


Q ss_pred             EEeCCCCeEEEEE--e----CCCeeEEE--EcCCCEEEEEcCCcEEEEEcCCCceeeee-------CCCCCEEEEEEeCC
Q 021744          176 VWDCASGQCAGVI--N----LGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDLSLS-------GPVGQVYAMAVGND  240 (308)
Q Consensus       176 ~wd~~~~~~~~~~--~----~~~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~~~~~~~-------~~~~~v~~~~~~~~  240 (308)
                      +||++.......+  .    .++..+++  .....++++|+.+.|++|++...+...+.       .....+.|++|+|.
T Consensus      1283 ~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1283 LLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred             EEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecch
Confidence            9999974222222  1    23346666  35567888887899999999876554322       22357799999999


Q ss_pred             --EEEEEcCCCeEEEEEcCCC
Q 021744          241 --LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       241 --~l~~g~~dg~i~iwd~~~~  259 (308)
                        .+|+|+.|.+|.||....+
T Consensus      1363 ~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1363 RLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             hHhhhhccCCceEEEeecCCc
Confidence              8899999999999987764

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=2.1e-16  Score=126.32  Aligned_cols=180  Identities=18%  Similarity=0.260  Sum_probs=139.1

Q ss_pred             ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC--CCCEEEEeeCCCcEEEEeCCCCeEEEEEe---C-CCee
Q 021744          121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS--GSDKLYSGSKDETVRVWDCASGQCAGVIN---L-GGEV  194 (308)
Q Consensus       121 ~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~dg~v~~wd~~~~~~~~~~~---~-~~~v  194 (308)
                      ..+++...|.|++||..++ +.+..+++++..+..+.|..  ....+.+|+.||+|++||+++......+.   + ..+.
T Consensus        42 ~vav~lSngsv~lyd~~tg-~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTG-QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eEEEEecCCeEEEEeccch-hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            3477888999999999998 89999999999999999976  45679999999999999999876666555   2 2355


Q ss_pred             EEEEc--CCCEEEEEc-----CCcEEEEEcCCCce-e--eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCc
Q 021744          195 GCMIS--EGPWIFIGV-----TNFVKAWNTQTNTD-L--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTN  261 (308)
Q Consensus       195 ~~~~~--~~~~l~~~~-----d~~i~~wd~~~~~~-~--~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~  261 (308)
                      .|+..  .++++++|.     +-.|.+||.|..+. +  ....|.+.|+++.|+|.   +|++||-||.|.+||+.....
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            66654  566777764     45899999998876 4  45689999999999997   999999999999999987532


Q ss_pred             ccccceeccccCCCeEE-EEecCC--CeEEEee--ceEEEEeecCc
Q 021744          262 CFEPAASLKVHTDSNRA-HFSRDV--TSLLGSV--SFIMFIGQNNK  302 (308)
Q Consensus       262 ~~~~~~~~~~~~~~v~~-~~s~d~--~~l~~s~--s~~i~~~~~~~  302 (308)
                       ...+.....|...|.. .|..++  +....+.  +..+|-+...+
T Consensus       201 -eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  201 -EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             -hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence             2333334457777888 999887  5444444  56666555433

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=5.7e-17  Score=147.48  Aligned_cols=225  Identities=10%  Similarity=0.112  Sum_probs=166.7

Q ss_pred             eeEEecCCCe-----eeccCCCcEEEEECCCC---C--CcccccceeeeeeeeeeeecCCc-e-EEeeCCCeEEEEEcCC
Q 021744           71 AKRFANNTWG-----RNNNFNNHSNNYRAGNS---K--NSNINNRAVIKTDILCRNWVQGN-C-MYGEKCKFLHSWTVGD  138 (308)
Q Consensus        71 ~i~~s~~g~~-----~s~~~d~~i~vwd~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~-~-~~g~~d~~i~iwd~~~  138 (308)
                      .++|.+.|..     |.|..||.|-+||...-   .  .+......|.+.|..+.|.+... . ++|+.||.|.|||++.
T Consensus        69 kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn  148 (1049)
T KOG0307|consen   69 KLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNK  148 (1049)
T ss_pred             eeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCC
Confidence            6888765543     88889999999998642   1  12223456778899999998774 4 8999999999999987


Q ss_pred             CceeeeEe--eCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCe--eEEE-E-cCC--CEEEEEc
Q 021744          139 GFKLLTQL--EGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVIN-LGGE--VGCM-I-SEG--PWIFIGV  208 (308)
Q Consensus       139 ~~~~~~~~--~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~--v~~~-~-~~~--~~l~~~~  208 (308)
                      ..... .+  ..-.+.|.+++|+..- ..|++++.+|.+.|||++..+++-.+. +...  +..+ | |+.  ++++++.
T Consensus       149 ~~tP~-~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~  227 (1049)
T KOG0307|consen  149 PETPF-TPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASG  227 (1049)
T ss_pred             cCCCC-CCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecC
Confidence            63222 22  2246789999999754 567999999999999999988877776 3222  3333 3 443  2333333


Q ss_pred             -CC--cEEEEEcCCCce--eeeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-E
Q 021744          209 -TN--FVKAWNTQTNTD--LSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-H  279 (308)
Q Consensus       209 -d~--~i~~wd~~~~~~--~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~  279 (308)
                       |+  .|.+||+|.-..  ..+.+|...|.++.|++.   ++++++.|+.|.+|+.+++    +.+.++....+++.- .
T Consensus       228 dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg----Evl~~~p~~~nW~fdv~  303 (1049)
T KOG0307|consen  228 DDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG----EVLGELPAQGNWCFDVQ  303 (1049)
T ss_pred             CCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc----eEeeecCCCCcceeeee
Confidence             44  899999986533  367899999999999986   9999999999999999998    888888888888888 9


Q ss_pred             EecCCCeEE-Ee-e--ceEEEEeec
Q 021744          280 FSRDVTSLL-GS-V--SFIMFIGQN  300 (308)
Q Consensus       280 ~s~d~~~l~-~s-~--s~~i~~~~~  300 (308)
                      |+|...-++ ++ -  .+.||....
T Consensus       304 w~pr~P~~~A~asfdgkI~I~sl~~  328 (1049)
T KOG0307|consen  304 WCPRNPSVMAAASFDGKISIYSLQG  328 (1049)
T ss_pred             ecCCCcchhhhheeccceeeeeeec
Confidence            999776444 33 2  455665553

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.72  E-value=4.7e-16  Score=121.85  Aligned_cols=200  Identities=13%  Similarity=0.113  Sum_probs=142.8

Q ss_pred             CCCcEEEEECCCCC--CcccccceeeeeeeeeeeecCCce--EEe----eCC---CeEEEEEcCCCc--------eeeeE
Q 021744           85 FNNHSNNYRAGNSK--NSNINNRAVIKTDILCRNWVQGNC--MYG----EKC---KFLHSWTVGDGF--------KLLTQ  145 (308)
Q Consensus        85 ~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~g----~~d---~~i~iwd~~~~~--------~~~~~  145 (308)
                      .|+.|.+-+++...  ........+.+.+..++-+|....  ++.    +..   -.+-||.+....        +.+..
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~  117 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS  117 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence            45777777775433  222223344455777776766532  111    111   246789987542        12223


Q ss_pred             ee-CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeE-EEEEeC------CCeeEE--EE--cCCCEEEEEcCCcEE
Q 021744          146 LE-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC-AGVINL------GGEVGC--MI--SEGPWIFIGVTNFVK  213 (308)
Q Consensus       146 ~~-~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~-~~~~~~------~~~v~~--~~--~~~~~l~~~~d~~i~  213 (308)
                      +. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+..      ....++  .+  .++..+++..|+++.
T Consensus       118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~  196 (370)
T KOG1007|consen  118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQ  196 (370)
T ss_pred             CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEE
Confidence            33 3557899999999998888876 78999999997665 444431      111221  12  368899999999999


Q ss_pred             EEEcCCCcee--eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeE
Q 021744          214 AWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSL  287 (308)
Q Consensus       214 ~wd~~~~~~~--~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l  287 (308)
                      .||+++..+.  .-.+|...|..+.|.|+   +|++|++||.|+|||.+..+   .+++++.+|..+|++ +|+|....|
T Consensus       197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---~pv~el~~HsHWvW~VRfn~~hdqL  273 (370)
T KOG1007|consen  197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---FPVQELPGHSHWVWAVRFNPEHDQL  273 (370)
T ss_pred             EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC---ccccccCCCceEEEEEEecCccceE
Confidence            9999988766  45678889999999999   89999999999999999874   889999999999999 999976655


Q ss_pred             E
Q 021744          288 L  288 (308)
Q Consensus       288 ~  288 (308)
                      +
T Consensus       274 i  274 (370)
T KOG1007|consen  274 I  274 (370)
T ss_pred             E
Confidence            5

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.71  E-value=2.4e-14  Score=122.22  Aligned_cols=259  Identities=9%  Similarity=0.079  Sum_probs=154.7

Q ss_pred             eEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe--eeccCCCcEEEEECC-CCCCccccc
Q 021744           29 STADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG--RNNNFNNHSNNYRAG-NSKNSNINN  104 (308)
Q Consensus        29 ~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~--~s~~~d~~i~vwd~~-~~~~~~~~~  104 (308)
                      +++...|+.|++|+.....+  ...+       ......... .++++|++++  +++..++.|.+|+++ ++.......
T Consensus         5 y~~~~~~~~I~~~~~~~~g~--l~~~-------~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~   75 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGA--LTLL-------QVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE   75 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCc--eeee-------eEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee
Confidence            45567799999999853200  0000       101111112 6899999998  444568889999996 232211111


Q ss_pred             ceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCc---eeeeEeeCcccceEEEEEeCCCCEEE-EeeCCCcEEEEe
Q 021744          105 RAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGF---KLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDETVRVWD  178 (308)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~dg~v~~wd  178 (308)
                      .........+.++|+++.  ++...++.|.+|++.+..   +.+..+. +......++++|++++++ +...++.|.+||
T Consensus        76 ~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d  154 (330)
T PRK11028         76 SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFT  154 (330)
T ss_pred             ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEE
Confidence            112223567889999976  333358999999997431   1223333 234567788999998885 555679999999


Q ss_pred             CCCCeEEE-------EEeCC-Ce-eEEEEcCCCEEEEEc--CCcEEEEEcCC--Cce--e-eeeCC------CCCEEEEE
Q 021744          179 CASGQCAG-------VINLG-GE-VGCMISEGPWIFIGV--TNFVKAWNTQT--NTD--L-SLSGP------VGQVYAMA  236 (308)
Q Consensus       179 ~~~~~~~~-------~~~~~-~~-v~~~~~~~~~l~~~~--d~~i~~wd~~~--~~~--~-~~~~~------~~~v~~~~  236 (308)
                      +.+...+.       ..... .+ -..+.++++++++..  +++|.+||+..  ++.  . .+...      ......+.
T Consensus       155 ~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~  234 (330)
T PRK11028        155 LSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH  234 (330)
T ss_pred             ECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence            98643221       11111 12 224468899988654  78999999973  332  2 22211      12334688


Q ss_pred             EeCC--EEEEEc-CCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee----ceEEEEe
Q 021744          237 VGND--LLFAGT-QDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV----SFIMFIG  298 (308)
Q Consensus       237 ~~~~--~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~----s~~i~~~  298 (308)
                      ++|+  +++++. .++.|.+|++.......+.+...... ..... .|+|||++|+++.    .+.+|..
T Consensus       235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence            9999  666664 47899999997542212233333222 23334 9999999999765    3455544

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.71  E-value=1.6e-15  Score=123.47  Aligned_cols=185  Identities=16%  Similarity=0.199  Sum_probs=144.9

Q ss_pred             ccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCC------ceeeeEeeCcccceEEEEEeCCC-CEEEEeeCCCc
Q 021744          103 NNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDG------FKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDET  173 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~------~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~  173 (308)
                      ...+|...+..+.|+|.+..  ++|++|.+|.||++...      .+++..|.+|...|--++|+|.. +.|+|++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            45788888999999987754  88999999999998754      25677899999999999999965 56899999999


Q ss_pred             EEEEeCCCCeEEEEEeCCCeeEEEE--cCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCC-EEEEEEeCC-EEEEEc-
Q 021744          174 VRVWDCASGQCAGVINLGGEVGCMI--SEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQ-VYAMAVGND-LLFAGT-  246 (308)
Q Consensus       174 v~~wd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~-v~~~~~~~~-~l~~g~-  246 (308)
                      |.+||+.+++.+.++.|+..+.+++  .+|.++++.+ |+.|++||.++++.+ .-.+|.+. ...+.|..+ .+++.+ 
T Consensus       156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf  235 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF  235 (472)
T ss_pred             EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecc
Confidence            9999999999999999999988774  6799999766 999999999999988 44577652 344556666 444444 


Q ss_pred             ---CCCeEEEEEcCCCCcccccc--eeccccCCCeEE-EEecCCCeEEEee
Q 021744          247 ---QDGAILAWKFNVTTNCFEPA--ASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       247 ---~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                         .++.+-+||-.+-+   +++  .++ ...+.|.. -|.+|...+...+
T Consensus       236 sr~seRq~aLwdp~nl~---eP~~~~el-DtSnGvl~PFyD~dt~ivYl~G  282 (472)
T KOG0303|consen  236 SRMSERQIALWDPNNLE---EPIALQEL-DTSNGVLLPFYDPDTSIVYLCG  282 (472)
T ss_pred             ccccccceeccCccccc---CcceeEEe-ccCCceEEeeecCCCCEEEEEe
Confidence               36789999977643   332  223 34567777 8889988776554

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.70  E-value=1.7e-16  Score=126.36  Aligned_cols=220  Identities=12%  Similarity=0.113  Sum_probs=162.8

Q ss_pred             CCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCCC
Q 021744           24 GGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSKN   99 (308)
Q Consensus        24 ~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~   99 (308)
                      .+++++|.++.-|.|||-|..++            .....++||..+  .+.+.|+...  +++|.|.+||+|++.+...
T Consensus       103 ~~~p~la~~G~~GvIrVid~~~~------------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C  170 (385)
T KOG1034|consen  103 TGNPFLAAGGYLGVIRVIDVVSG------------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC  170 (385)
T ss_pred             CCCeeEEeecceeEEEEEecchh------------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE
Confidence            36789999999999999998876            445567888888  8999999865  9999999999999987765


Q ss_pred             ccc--ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCc-----eee----------------e------EeeCc
Q 021744          100 SNI--NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGF-----KLL----------------T------QLEGH  149 (308)
Q Consensus       100 ~~~--~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~-----~~~----------------~------~~~~h  149 (308)
                      +..  -..+|...|.++.|+.++.. ++++.|..|++|++....     +..                .      +-.-|
T Consensus       171 v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH  250 (385)
T KOG1034|consen  171 VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH  250 (385)
T ss_pred             EEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence            433  34678888999999999976 899999999999997431     000                0      11235


Q ss_pred             ccceEEEEEeCCCCEEEEeeCCCcEEEEeC-CCCeEEEEE-------------e-CCCeeEEE----EcCCCEEEEEc-C
Q 021744          150 QKVVSGITLPSGSDKLYSGSKDETVRVWDC-ASGQCAGVI-------------N-LGGEVGCM----ISEGPWIFIGV-T  209 (308)
Q Consensus       150 ~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~-~~~~~~~~~-------------~-~~~~v~~~----~~~~~~l~~~~-d  209 (308)
                      ...|-|+.|-  |++++|-|-++.|..|.. +-++.+...             . ....+.-+    -+-.+.|+.|. .
T Consensus       251 rnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~  328 (385)
T KOG1034|consen  251 RNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQS  328 (385)
T ss_pred             cchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCC
Confidence            6666666665  468999999999999987 222222222             1 11111111    13467788777 8


Q ss_pred             CcEEEEEcCCCcee---eee--CCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcC
Q 021744          210 NFVKAWNTQTNTDL---SLS--GPVGQVYAMAVGND--LLFAGTQDGAILAWKFN  257 (308)
Q Consensus       210 ~~i~~wd~~~~~~~---~~~--~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~  257 (308)
                      |.|.+||++..++.   ++.  .....|...+|+.|  +|+..++|++|--||..
T Consensus       329 g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  329 GKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             CcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            89999999988763   332  22457999999999  88888999999999864

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.69  E-value=4.2e-15  Score=128.90  Aligned_cols=257  Identities=13%  Similarity=0.115  Sum_probs=170.5

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCC-----
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSK-----   98 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~-----   98 (308)
                      ..+.+++|+.|+.|++|..... .         ......+.+|...+++++..-.. .....|+++++||.+..+     
T Consensus        68 ~~a~~vsG~sD~~v~lW~l~~~-~---------~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~  137 (764)
T KOG1063|consen   68 IVAEMVSGDSDGRVILWKLRDE-Y---------LIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLA  137 (764)
T ss_pred             ccceEEEccCCCcEEEEEEeeh-h---------eEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeeh
Confidence            3348999999999999987722 0         11122234455556666655555 334778888888874322     


Q ss_pred             --------------------------------------------CcccccceeeeeeeeeeeecCCc----eEEeeCCCe
Q 021744           99 --------------------------------------------NSNINNRAVIKTDILCRNWVQGN----CMYGEKCKF  130 (308)
Q Consensus        99 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~d~~  130 (308)
                                                                  .....+.+|..-+..+.|...+.    .++++.|..
T Consensus       138 ~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~y  217 (764)
T KOG1063|consen  138 VLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRY  217 (764)
T ss_pred             heehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceE
Confidence                                                        00012234444466666655442    288999999


Q ss_pred             EEEEEcCCCc--------------------eeeeE----------eeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744          131 LHSWTVGDGF--------------------KLLTQ----------LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA  180 (308)
Q Consensus       131 i~iwd~~~~~--------------------~~~~~----------~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~  180 (308)
                      ||||.+.-+.                    ....+          +.||++.|.++.|+|.+..|+++|.|.++.+|...
T Consensus       218 IRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd  297 (764)
T KOG1063|consen  218 IRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPD  297 (764)
T ss_pred             EEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecC
Confidence            9999874221                    01111          23899999999999999999999999999999776


Q ss_pred             CC--eEEEEEe---CC----CeeEEEE-cCCCEEEE-EcCCcEEEEEcCCC----ceeeeeCCCCCEEEEEEeCC--EEE
Q 021744          181 SG--QCAGVIN---LG----GEVGCMI-SEGPWIFI-GVTNFVKAWNTQTN----TDLSLSGPVGQVYAMAVGND--LLF  243 (308)
Q Consensus       181 ~~--~~~~~~~---~~----~~v~~~~-~~~~~l~~-~~d~~i~~wd~~~~----~~~~~~~~~~~v~~~~~~~~--~l~  243 (308)
                      +.  --+....   ..    +-..+++ +++..+++ |..|..++|-....    +...+.+|...|.+++|+|.  +|+
T Consensus       298 ~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflL  377 (764)
T KOG1063|consen  298 ENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLL  377 (764)
T ss_pred             CccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEE
Confidence            54  2222222   11    2234444 56666665 45999999983332    12257799999999999998  999


Q ss_pred             EEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          244 AGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       244 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      +.+.|.+-|+|---..+..+..+..-+.|...+.| +|-+....+++++
T Consensus       378 svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgA  426 (764)
T KOG1063|consen  378 SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGA  426 (764)
T ss_pred             EeccccceeeecccccccceeeecccccccccceeeehccCCceeeecc
Confidence            99999999999766333334555556678889999 8887433444444

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.69  E-value=1.4e-15  Score=119.19  Aligned_cols=216  Identities=12%  Similarity=0.075  Sum_probs=152.2

Q ss_pred             ceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEec--CCCeeeccCCCcEEEEECCCCCCcccc
Q 021744           28 LSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFAN--NTWGRNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        28 ~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~--~g~~~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      .+|+-. |..|-+|+.....+....     .+.+... +|+..  .-+|+|  +|+.+....|++++.||+.+.......
T Consensus       137 klasm~-dn~i~l~~l~ess~~vae-----v~ss~s~-e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI  209 (370)
T KOG1007|consen  137 KLASMD-DNNIVLWSLDESSKIVAE-----VLSSESA-EMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSI  209 (370)
T ss_pred             eeEEec-cCceEEEEcccCcchhee-----ecccccc-cccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcch
Confidence            344443 899999998876221111     1111111 12222  567887  555577778999999999877666666


Q ss_pred             cceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCC-CCEEEEeeCCCcEEEEeCC
Q 021744          104 NRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCA  180 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~v~~wd~~  180 (308)
                      ...|...++.+.|.|...+  ++++.||.|++||.+..+.++.++.+|.-.|+++.|+|. .+++++++.|..|.+|...
T Consensus       210 ~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  210 EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS  289 (370)
T ss_pred             hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence            7788888999999999866  899999999999999776889999999999999999985 4678999999999999877


Q ss_pred             CCeEEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcC
Q 021744          181 SGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFN  257 (308)
Q Consensus       181 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~  257 (308)
                      +-.....+..+...... ++.     -+...++  -+..+++.++..|++.|++++|+.-   +||+-+.||++.|=.+.
T Consensus       290 svSSE~qi~~~~dese~-e~~-----dseer~k--pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  290 SVSSEQQIEFEDDESES-EDE-----DSEERVK--PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             ccccccccccccccccC-cch-----hhHHhcc--cccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            54332233211110000 000     0000111  2445566678899999999999865   89999999999987766


Q ss_pred             C
Q 021744          258 V  258 (308)
Q Consensus       258 ~  258 (308)
                      .
T Consensus       362 r  362 (370)
T KOG1007|consen  362 R  362 (370)
T ss_pred             h
Confidence            4

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.69  E-value=5.7e-17  Score=143.03  Aligned_cols=226  Identities=19%  Similarity=0.212  Sum_probs=170.0

Q ss_pred             cccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCc
Q 021744           65 TANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGF  140 (308)
Q Consensus        65 ~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~  140 (308)
                      .||-++  |..|...|.+ ++|+.|..++||..+++..+ ....+|...+..++.+..+.. ++++.|..|++|-+.++ 
T Consensus       187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l-As~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~-  264 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL-ASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG-  264 (1113)
T ss_pred             HhhhhheeeeeeccccceEeecCccceeeeeeccchhhh-ccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC-
Confidence            488877  8889999999 99999999999998877654 356788888888888777755 88999999999999999 


Q ss_pred             eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEE--------------EEEeCCC--------------
Q 021744          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA--------------GVINLGG--------------  192 (308)
Q Consensus       141 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~--------------~~~~~~~--------------  192 (308)
                      .++..+.+|++.|++++|+|-.    +.+.||++++||.+-.-.+              ..+....              
T Consensus       265 ~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea  340 (1113)
T KOG0644|consen  265 APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEA  340 (1113)
T ss_pred             chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCccc
Confidence            8999999999999999999854    7889999999998821111              1110000              


Q ss_pred             e---eEE-EEcCCCEEE------------EEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC---EEEEEcCCCeE
Q 021744          193 E---VGC-MISEGPWIF------------IGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAI  251 (308)
Q Consensus       193 ~---v~~-~~~~~~~l~------------~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~---~l~~g~~dg~i  251 (308)
                      .   ..+ .+.+..+++            +.. +..+.+|++.++++. .+.+|...+..+.++|-   +..+++.||..
T Consensus       341 ~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst  420 (1113)
T KOG0644|consen  341 RNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGST  420 (1113)
T ss_pred             ccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCce
Confidence            0   000 011111222            222 456789999999887 78899999999999986   77789999999


Q ss_pred             EEEEcCCCCccccccee-ccccCCCeEEEEecCCCeEEEee-ceEEEEeec
Q 021744          252 LAWKFNVTTNCFEPAAS-LKVHTDSNRAHFSRDVTSLLGSV-SFIMFIGQN  300 (308)
Q Consensus       252 ~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~s~d~~~l~~s~-s~~i~~~~~  300 (308)
                      .|||+-.+    .+++. ..+|...+.+.||+||+.++.+- -..+||...
T Consensus       421 ~iwdi~eg----~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~  467 (1113)
T KOG0644|consen  421 IIWDIWEG----IPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGT  467 (1113)
T ss_pred             EeeecccC----CcceeeecccceeeccccCCCCceEecCCCCCceEEecc
Confidence            99999987    33333 24677777779999999888665 355666543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=8.6e-15  Score=119.38  Aligned_cols=229  Identities=13%  Similarity=0.131  Sum_probs=165.0

Q ss_pred             CCccccccc--eeEEecCCCe-eeccCCCcEEEEECC------CCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeE
Q 021744           62 PAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAG------NSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFL  131 (308)
Q Consensus        62 ~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i  131 (308)
                      .-+.+|.+.  ++.|+.++.. |+|+.|..+++|.++      +.+++......|...+.++.|...+.. .+|+.+++|
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            345688888  8999999988 999999999999984      456665555666677999999888766 788999999


Q ss_pred             EEEEcCCCceeeeEeeC--cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCe-EEEEE---eCCCee-EEEE-cC-CC
Q 021744          132 HSWTVGDGFKLLTQLEG--HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ-CAGVI---NLGGEV-GCMI-SE-GP  202 (308)
Q Consensus       132 ~iwd~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~-~~~~~---~~~~~v-~~~~-~~-~~  202 (308)
                      .+.|+++. +.+..+..  ..+.|+.+..+|..+.+++.+.++.|.+||.+..+ ....+   ..+... +..+ |. ..
T Consensus       130 I~HDiEt~-qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~  208 (609)
T KOG4227|consen  130 IKHDIETK-QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA  208 (609)
T ss_pred             Eeeecccc-eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence            99999998 56655541  23599999999999999999999999999998755 22222   122222 2223 33 33


Q ss_pred             EEEEEc-CCcEEEEEcCCCc-------------------------------------------------eeeee-CCC--
Q 021744          203 WIFIGV-TNFVKAWNTQTNT-------------------------------------------------DLSLS-GPV--  229 (308)
Q Consensus       203 ~l~~~~-d~~i~~wd~~~~~-------------------------------------------------~~~~~-~~~--  229 (308)
                      +|++.. .+-+.+||.+..+                                                 +..++ .|.  
T Consensus       209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~  288 (609)
T KOG4227|consen  209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPN  288 (609)
T ss_pred             eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCC
Confidence            445544 5677788765331                                                 11111 111  


Q ss_pred             -----CCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCc-------------------ccccceeccccCCCeEE-EEecC
Q 021744          230 -----GQVYAMAVGND-LLFAGTQDGAILAWKFNVTTN-------------------CFEPAASLKVHTDSNRA-HFSRD  283 (308)
Q Consensus       230 -----~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~-------------------~~~~~~~~~~~~~~v~~-~~s~d  283 (308)
                           ..+.+++|-.+ .+++|+.+-.|++|.+.....                   ....+..+++|...++. .|+|.
T Consensus       289 GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H  368 (609)
T KOG4227|consen  289 GYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQH  368 (609)
T ss_pred             cceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCC
Confidence                 25677888888 899999999999999864221                   11234567799999999 99999


Q ss_pred             CCeEEEee
Q 021744          284 VTSLLGSV  291 (308)
Q Consensus       284 ~~~l~~s~  291 (308)
                      ..+|++|+
T Consensus       369 ~~~l~SSG  376 (609)
T KOG4227|consen  369 NNLLVSSG  376 (609)
T ss_pred             cceEeccc
Confidence            87777777

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=4.6e-15  Score=121.83  Aligned_cols=172  Identities=16%  Similarity=0.177  Sum_probs=128.4

Q ss_pred             eeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe
Q 021744          111 DILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN  189 (308)
Q Consensus       111 ~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~  189 (308)
                      ..+++|..+|.. ++|+.||++|+|+.... ..+.....|.+.|.++.|+||++.|++.+.| ..++|+.+++..+....
T Consensus       147 ~k~vaf~~~gs~latgg~dg~lRv~~~Ps~-~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  147 QKVVAFNGDGSKLATGGTDGTLRVWEWPSM-LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             ceEEEEcCCCCEeeeccccceEEEEecCcc-hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            477899999766 89999999999997766 4555667799999999999999999999999 99999999997666554


Q ss_pred             CCCe---e-EEEE-cCC---C-EEEEEc--CCcEEEEEcCCCce----e--eeeCCCCCEEEEEEeCC--EEEEEcCCCe
Q 021744          190 LGGE---V-GCMI-SEG---P-WIFIGV--TNFVKAWNTQTNTD----L--SLSGPVGQVYAMAVGND--LLFAGTQDGA  250 (308)
Q Consensus       190 ~~~~---v-~~~~-~~~---~-~l~~~~--d~~i~~wd~~~~~~----~--~~~~~~~~v~~~~~~~~--~l~~g~~dg~  250 (308)
                      ..+.   . .|-+ .++   . ++++..  -+.|..||+.....    .  +...-...|.+++.+++  +++.|+.||.
T Consensus       225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs  304 (398)
T KOG0771|consen  225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS  304 (398)
T ss_pred             CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence            2111   1 1222 222   2 334332  44666666543322    1  22223447999999999  9999999999


Q ss_pred             EEEEEcCCCCcccccceec-cccCCCeEE-EEecCCCeEE
Q 021744          251 ILAWKFNVTTNCFEPAASL-KVHTDSNRA-HFSRDVTSLL  288 (308)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~-~~~~~~v~~-~~s~d~~~l~  288 (308)
                      |.|++..+-    +.++-. +.|...|+. .|+||.++++
T Consensus       305 Vai~~~~~l----q~~~~vk~aH~~~VT~ltF~Pdsr~~~  340 (398)
T KOG0771|consen  305 VAIYDAKSL----QRLQYVKEAHLGFVTGLTFSPDSRYLA  340 (398)
T ss_pred             EEEEEecee----eeeEeehhhheeeeeeEEEcCCcCccc
Confidence            999999885    544443 479999999 9999999998

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.5e-15  Score=124.65  Aligned_cols=188  Identities=13%  Similarity=0.082  Sum_probs=133.4

Q ss_pred             CCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCc
Q 021744           23 GGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        23 ~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~  100 (308)
                      +..|+.+++++.|+++|+|+....           .+.......|..- ++.|+|||+. ++-+.| ..+||+++++..+
T Consensus       153 ~~~gs~latgg~dg~lRv~~~Ps~-----------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~  220 (398)
T KOG0771|consen  153 NGDGSKLATGGTDGTLRVWEWPSM-----------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAAL  220 (398)
T ss_pred             cCCCCEeeeccccceEEEEecCcc-----------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchh
Confidence            344689999999999999996655           3333333333333 8999999999 999999 8999999988544


Q ss_pred             cccc-ceeeeeeeeeeeecCC-----ce-EEeeCCCeEEEEEcCCCce----eeeEeeCcccceEEEEEeCCCCEEEEee
Q 021744          101 NINN-RAVIKTDILCRNWVQG-----NC-MYGEKCKFLHSWTVGDGFK----LLTQLEGHQKVVSGITLPSGSDKLYSGS  169 (308)
Q Consensus       101 ~~~~-~~~~~~~~~~~~~~~~-----~~-~~g~~d~~i~iwd~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~s  169 (308)
                      .... .........|.|..++     .+ +.....+.|+.|++.....    ..++.......|++++++++|++++.|+
T Consensus       221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT  300 (398)
T KOG0771|consen  221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT  300 (398)
T ss_pred             hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence            3222 1112226788898887     22 3334556677776653311    1222222345899999999999999999


Q ss_pred             CCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcC
Q 021744          170 KDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ  247 (308)
Q Consensus       170 ~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~  247 (308)
                      .||.|.+++..+-++++..+                                    ..|...|+.+.|+|+  ++++-+.
T Consensus       301 ~dGsVai~~~~~lq~~~~vk------------------------------------~aH~~~VT~ltF~Pdsr~~~svSs  344 (398)
T KOG0771|consen  301 MDGSVAIYDAKSLQRLQYVK------------------------------------EAHLGFVTGLTFSPDSRYLASVSS  344 (398)
T ss_pred             cCCcEEEEEeceeeeeEeeh------------------------------------hhheeeeeeEEEcCCcCccccccc
Confidence            99999999988766654443                                    357778899999998  7888888


Q ss_pred             CCeEEEEEcCC
Q 021744          248 DGAILAWKFNV  258 (308)
Q Consensus       248 dg~i~iwd~~~  258 (308)
                      |....+..+.-
T Consensus       345 ~~~~~v~~l~v  355 (398)
T KOG0771|consen  345 DNEAAVTKLAV  355 (398)
T ss_pred             CCceeEEEEee
Confidence            88888877664

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.66  E-value=8.8e-15  Score=113.40  Aligned_cols=221  Identities=16%  Similarity=0.164  Sum_probs=150.7

Q ss_pred             CCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc---eeEEecCCCeeeccCCCcEEEEECCCCC--
Q 021744           24 GGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA---AKRFANNTWGRNNNFNNHSNNYRAGNSK--   98 (308)
Q Consensus        24 ~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~---~i~~s~~g~~~s~~~d~~i~vwd~~~~~--   98 (308)
                      ..+.++.+|..-|.+++|..++.           .+.+. .+++...   .+..-|++...+-+.|..+.+|++.-+.  
T Consensus        23 qa~~rL~sg~~~G~V~~w~lqt~-----------r~~~~-~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i   90 (323)
T KOG0322|consen   23 QANERLMSGLSVGIVKMWVLQTE-----------RDLPL-IRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFI   90 (323)
T ss_pred             ccchhhhcccccceEEEEEeecC-----------ccchh-hhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceE
Confidence            34667999999999999998876           22221 2222222   3445566555888889999999885321  


Q ss_pred             ----------------------Ccccc--------ccee--------------------eeeeeeeee-ecCCc---eEE
Q 021744           99 ----------------------NSNIN--------NRAV--------------------IKTDILCRN-WVQGN---CMY  124 (308)
Q Consensus        99 ----------------------~~~~~--------~~~~--------------------~~~~~~~~~-~~~~~---~~~  124 (308)
                                            .....        ...|                    .+.+.+... ...+.   .+.
T Consensus        91 ~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~llla  170 (323)
T KOG0322|consen   91 SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLA  170 (323)
T ss_pred             EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEE
Confidence                                  00000        0000                    000111121 11122   166


Q ss_pred             eeCCCeEEEEEcCCCce---------eeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC--eE--E--EEEe
Q 021744          125 GEKCKFLHSWTVGDGFK---------LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG--QC--A--GVIN  189 (308)
Q Consensus       125 g~~d~~i~iwd~~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~--~~--~--~~~~  189 (308)
                      |-++|.+.+||+.++.+         .......|+.+|.++.+.+.-..=++|+.+..+..|.++..  .+  .  .+++
T Consensus       171 GyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk  250 (323)
T KOG0322|consen  171 GYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK  250 (323)
T ss_pred             eccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEec
Confidence            88999999999998621         12233469999999999987666788888889999988743  21  1  1222


Q ss_pred             CCCee-EEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEc
Q 021744          190 LGGEV-GCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF  256 (308)
Q Consensus       190 ~~~~v-~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~  256 (308)
                      +++.- ..+-+|++++++++ |+.|++|..++..++ .++.|...|++++|+|+  ++|+++.|++|.+|++
T Consensus       251 npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  251 NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            33322 23458999999766 999999999999988 88999999999999999  9999999999999987

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.66  E-value=1.1e-14  Score=125.39  Aligned_cols=221  Identities=14%  Similarity=0.118  Sum_probs=148.4

Q ss_pred             ecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe--eeccCCCcEEEEECCCCCCc------ccc
Q 021744           32 DTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG--RNNNFNNHSNNYRAGNSKNS------NIN  103 (308)
Q Consensus        32 ~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~------~~~  103 (308)
                      ++..|.|-|++...-.|-|-      -..+....|..-..+.|.|=...  |.+..|+.|++|.+..+...      ...
T Consensus       599 ~g~gG~iai~el~~PGrLPD------gv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~  672 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLPD------GVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKI  672 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCCc------ccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCccee
Confidence            45567999999775422110      01111111111116777774444  99999999999999654322      123


Q ss_pred             cceeeeeeeeeeeecCC--ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744          104 NRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~  181 (308)
                      +..|...+..+.|.|-.  ..++++.|-+|++||+.+. +....+.+|++.|..++|+|+|+.+++.+.||+|++|+.++
T Consensus       673 lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~-~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs  751 (1012)
T KOG1445|consen  673 LTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA-KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS  751 (1012)
T ss_pred             eecccceEEEEEecchhhhHhhhhhccceeeeeehhhh-hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence            35566668999999875  3388999999999999998 67788999999999999999999999999999999999987


Q ss_pred             Ce-EEEEEe--CCCe-eE-EEEcCCCEEEE-EcC----CcEEEEEcCCCcee-----eeeCCCCCEEEEEEeCC---EEE
Q 021744          182 GQ-CAGVIN--LGGE-VG-CMISEGPWIFI-GVT----NFVKAWNTQTNTDL-----SLSGPVGQVYAMAVGND---LLF  243 (308)
Q Consensus       182 ~~-~~~~~~--~~~~-v~-~~~~~~~~l~~-~~d----~~i~~wd~~~~~~~-----~~~~~~~~v~~~~~~~~---~l~  243 (308)
                      ++ +++.-+  .+.. .. .+..+++++++ |.|    .+|.+||..+-...     .+....+ +.--.+.+|   +|+
T Consensus       752 ~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps-~LvP~YD~Ds~~lfl  830 (1012)
T KOG1445|consen  752 REQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPS-PLVPHYDYDSNVLFL  830 (1012)
T ss_pred             CCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCc-cccccccCCCceEEE
Confidence            54 444433  1111 12 22468888774 433    47889987654321     1111111 111223344   889


Q ss_pred             EEcCCCeEEEEEcCCCC
Q 021744          244 AGTQDGAILAWKFNVTT  260 (308)
Q Consensus       244 ~g~~dg~i~iwd~~~~~  260 (308)
                      +|-.|..|++|.+-..+
T Consensus       831 tGKGD~~v~~yEv~~es  847 (1012)
T KOG1445|consen  831 TGKGDRFVNMYEVIYES  847 (1012)
T ss_pred             ecCCCceEEEEEecCCC
Confidence            99999999999987754

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=2.2e-13  Score=121.36  Aligned_cols=264  Identities=14%  Similarity=0.111  Sum_probs=186.3

Q ss_pred             CCCceEEecCCCeEEEeecCC--CCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGK--CNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~--~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .++++|++-.||.|.+|+.-.  ...+.|..+|.-.....        +++|+++|.+ .||+..+.+-+|.+++++.  
T Consensus       216 n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~--------~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--  285 (792)
T KOG1963|consen  216 NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN--------SLSFSSDGAYLLSGGREGVLVLWQLETGKK--  285 (792)
T ss_pred             ccceEEEeccCCcEEEEeccccccccccceEEEecccccc--------eeEEecCCceEeecccceEEEEEeecCCCc--
Confidence            467899999999999998554  44566666665321111        7899999999 9999999999999988862  


Q ss_pred             cccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeC-----------cccceEEEEEeCCCCEEEEee
Q 021744          102 INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG-----------HQKVVSGITLPSGSDKLYSGS  169 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~-----------h~~~v~~~~~~~~~~~l~s~s  169 (308)
                      +.+......+..+.++|++.. ....+|+.|.+..+.+. ....++.+           ..+-.+.++++|..+.++-.+
T Consensus       286 qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl-~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~  364 (792)
T KOG1963|consen  286 QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL-EIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG  364 (792)
T ss_pred             ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccch-hhhhhccCccCCCccccccccccceeEEEcCCCCceeecC
Confidence            344555566888999999966 67778999999887654 22222222           234567889999778889999


Q ss_pred             CCCcEEEEeCCCCeEEEEEe------CCCe------eEEE--EcCCCEEEEE---------cCC--cEEEEEcCCCce--
Q 021744          170 KDETVRVWDCASGQCAGVIN------LGGE------VGCM--ISEGPWIFIG---------VTN--FVKAWNTQTNTD--  222 (308)
Q Consensus       170 ~dg~v~~wd~~~~~~~~~~~------~~~~------v~~~--~~~~~~l~~~---------~d~--~i~~wd~~~~~~--  222 (308)
                      ..+.|.+||+-+.+.+..+.      +.+.      ++.+  ...|.++++.         .|+  .+++|-....+.  
T Consensus       365 ~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~  444 (792)
T KOG1963|consen  365 HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTF  444 (792)
T ss_pred             CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCccee
Confidence            99999999999988777765      1111      1222  2347888764         133  678897654432  


Q ss_pred             --e--eeeCCCCCEEEEEEeCC----EEEEEcCCCeEEEEEcCC------CCcccccceeccccCCCeEE-EEecCCCeE
Q 021744          223 --L--SLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNV------TTNCFEPAASLKVHTDSNRA-HFSRDVTSL  287 (308)
Q Consensus       223 --~--~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~------~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l  287 (308)
                        .  ....|...+...++.+.    .+++++.||.+++|-+..      ....+.+...-.-|..++.. +|+.||..|
T Consensus       445 ~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsll  524 (792)
T KOG1963|consen  445 ILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLL  524 (792)
T ss_pred             EEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEE
Confidence              2  23467777666666543    789999999999999843      22223333322247788888 999999999


Q ss_pred             EEeeceEEEEee
Q 021744          288 LGSVSFIMFIGQ  299 (308)
Q Consensus       288 ~~s~s~~i~~~~  299 (308)
                      +++.+..|-++.
T Consensus       525 a~s~~~~Itiwd  536 (792)
T KOG1963|consen  525 AVSFDDTITIWD  536 (792)
T ss_pred             EEecCCEEEEec
Confidence            988865555554

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.66  E-value=3.8e-14  Score=125.21  Aligned_cols=227  Identities=12%  Similarity=0.049  Sum_probs=156.2

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEECCCCCC-----cccccceeeeeeeeeeeecCC---ceEEeeCCCeEEEEEcCCCc
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKN-----SNINNRAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDGF  140 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~~~g~~d~~i~iwd~~~~~  140 (308)
                      ++.|+|....  |.|.++|+|-+||+..+..     +......|...+..+.+-.+.   .+++++.||.|..|+++.-.
T Consensus       247 ~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~  326 (555)
T KOG1587|consen  247 CLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLS  326 (555)
T ss_pred             EEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccc
Confidence            7899987665  8999999999999965543     112234455556666665433   36889999999999876432


Q ss_pred             eeeeEe-----e------CcccceEEEEEeC-CCCEEEEeeCCCcEEEEeCC---CCe-----EEEEEe-CCCeeEEEEc
Q 021744          141 KLLTQL-----E------GHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCA---SGQ-----CAGVIN-LGGEVGCMIS  199 (308)
Q Consensus       141 ~~~~~~-----~------~h~~~v~~~~~~~-~~~~l~s~s~dg~v~~wd~~---~~~-----~~~~~~-~~~~v~~~~~  199 (308)
                      .+...+     .      .-...+++++|.+ +...++.|+.+|.|.--+-.   ...     ....+. |.+++.++..
T Consensus       327 ~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~  406 (555)
T KOG1587|consen  327 LPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSR  406 (555)
T ss_pred             cchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeec
Confidence            111111     1      1234678999987 45779999999998873332   222     111112 6677777742


Q ss_pred             -C--CCEEEEEcCCcEEEEEcC-CCcee-eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccc
Q 021744          200 -E--GPWIFIGVTNFVKAWNTQ-TNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKV  271 (308)
Q Consensus       200 -~--~~~l~~~~d~~i~~wd~~-~~~~~-~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  271 (308)
                       +  .+++++++|-++++|... ...++ .+..+...+++++|||.   .|+++..||.|.+||+.....  .++.+...
T Consensus       407 nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~--~Pv~s~~~  484 (555)
T KOG1587|consen  407 NPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE--EPVLSQKV  484 (555)
T ss_pred             CCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc--CCcccccc
Confidence             2  445556669999999877 44444 67777888999999998   899999999999999987654  66776666


Q ss_pred             cCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          272 HTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       272 ~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      +...... .|++.|+.|+.+. -+.++++.
T Consensus       485 ~~~~l~~~~~s~~g~~lavGd~~G~~~~~~  514 (555)
T KOG1587|consen  485 CSPALTRVRWSPNGKLLAVGDANGTTHILK  514 (555)
T ss_pred             cccccceeecCCCCcEEEEecCCCcEEEEE
Confidence            6666666 8888899988655 44444443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.65  E-value=5e-14  Score=110.71  Aligned_cols=225  Identities=14%  Similarity=0.096  Sum_probs=154.6

Q ss_pred             eeEEecCC--Ce--eeccCCCcEEEEECCCCCCcc---cccce-----eeeeeeeeeeecCC-c-eEEeeCCCeEEEEEc
Q 021744           71 AKRFANNT--WG--RNNNFNNHSNNYRAGNSKNSN---INNRA-----VIKTDILCRNWVQG-N-CMYGEKCKFLHSWTV  136 (308)
Q Consensus        71 ~i~~s~~g--~~--~s~~~d~~i~vwd~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~-~-~~~g~~d~~i~iwd~  136 (308)
                      .+.|.|+.  .+  ..++.+-.+|+|.+...+...   ..+..     +.....+..+..-. + ..+.+-|.+..|||+
T Consensus       101 K~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdi  180 (364)
T KOG0290|consen  101 KLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDI  180 (364)
T ss_pred             ceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEE
Confidence            57888876  44  677777789999996322111   11111     11224444444333 3 367788999999999


Q ss_pred             CCCc--eeeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCCeEEEEEe-C---CCeeEEEE---cCCCEEEE
Q 021744          137 GDGF--KLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVIN-L---GGEVGCMI---SEGPWIFI  206 (308)
Q Consensus       137 ~~~~--~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~~~~~~~~-~---~~~v~~~~---~~~~~l~~  206 (308)
                      +++.  .....+-.|.+.|..++|...+ ..++|++.||+|+++|++..+....+. .   ..+...+.   .+-+++++
T Consensus       181 e~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymAT  260 (364)
T KOG0290|consen  181 ETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMAT  260 (364)
T ss_pred             eeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhh
Confidence            9862  2456778899999999999865 578999999999999999866544443 2   22333333   24556664


Q ss_pred             -Ec-CCcEEEEEcCCCcee--eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCc--ccccceeccccCCCeE
Q 021744          207 -GV-TNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTN--CFEPAASLKVHTDSNR  277 (308)
Q Consensus       207 -~~-d~~i~~wd~~~~~~~--~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~v~  277 (308)
                       +. ...|.+.|++.-...  ++.+|...|+.++|.|.   .++++++|..+.+||+.....  ...++..+. .+..|+
T Consensus       261 f~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVN  339 (364)
T KOG0290|consen  261 FAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVN  339 (364)
T ss_pred             hhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceee
Confidence             33 568999999976443  89999999999999998   999999999999999986422  123344444 456777


Q ss_pred             E-EEec-CCCeEEEeeceEEE
Q 021744          278 A-HFSR-DVTSLLGSVSFIMF  296 (308)
Q Consensus       278 ~-~~s~-d~~~l~~s~s~~i~  296 (308)
                      . .|++ ...+++......+-
T Consensus       340 qi~Ws~~~~Dwiai~~~kkle  360 (364)
T KOG0290|consen  340 QIQWSSSQPDWIAICFGKKLE  360 (364)
T ss_pred             eeeecccCCCEEEEEecCeee
Confidence            7 9985 45677755444443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.64  E-value=2.4e-13  Score=110.19  Aligned_cols=218  Identities=11%  Similarity=0.079  Sum_probs=152.2

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG  148 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~  148 (308)
                      .+.|+.+... ..|+.|| -+++..+.-... .........+..+.|+..=.. +...+-..+++++.+.+ ..+..+. 
T Consensus        10 ~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~-~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~-~~ICe~~-   85 (391)
T KOG2110|consen   10 FIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC-FSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKK-TTICEIF-   85 (391)
T ss_pred             eeeeccceeEEEccCCCc-eeEEecCchHHh-hcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccC-ceEEEEe-
Confidence            3557777777 8888888 588887543221 011111112333444433222 33333356889998877 5565555 


Q ss_pred             cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC----CCeeEEEEcC--CCEEEE-Ec--CCcEEEEEcCC
Q 021744          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL----GGEVGCMISE--GPWIFI-GV--TNFVKAWNTQT  219 (308)
Q Consensus       149 h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~----~~~v~~~~~~--~~~l~~-~~--d~~i~~wd~~~  219 (308)
                      -..+|.++.++.+  .|+.+-++. |+|||+++-+.+.++..    +..+.+++++  +.+++- ++  .|.|.+||+.+
T Consensus        86 fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n  162 (391)
T KOG2110|consen   86 FPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN  162 (391)
T ss_pred             cCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc
Confidence            4678999999854  566655544 99999999999988872    2234555544  457774 22  78999999999


Q ss_pred             Ccee-eeeCCCCCEEEEEEeCC--EEEEEcCCCe-EEEEEcCCCCcccccceeccccCC--CeEE-EEecCCCeEEEee-
Q 021744          220 NTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGA-ILAWKFNVTTNCFEPAASLKVHTD--SNRA-HFSRDVTSLLGSV-  291 (308)
Q Consensus       220 ~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~--~v~~-~~s~d~~~l~~s~-  291 (308)
                      -+.. .+..|++++-+++|+++  +||++++.|+ ||+|.+.++    +.+.++.....  .|.+ +|+||+++|.+++ 
T Consensus       163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G----~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~  238 (391)
T KOG2110|consen  163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG----QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN  238 (391)
T ss_pred             ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc----cEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence            8888 78899999999999999  9999999998 699999998    77777774443  4555 9999999998666 


Q ss_pred             --ceEEEEee
Q 021744          292 --SFIMFIGQ  299 (308)
Q Consensus       292 --s~~i~~~~  299 (308)
                        .++||.+.
T Consensus       239 TeTVHiFKL~  248 (391)
T KOG2110|consen  239 TETVHIFKLE  248 (391)
T ss_pred             CCeEEEEEec
Confidence              56666554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.64  E-value=1.1e-14  Score=126.05  Aligned_cols=209  Identities=10%  Similarity=0.105  Sum_probs=153.1

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG  148 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~  148 (308)
                      .++|.|||.. +.+. +..+.+||.+.|..+ ..+++|+..|.+++++.+|.. ++|+.|+.|.+|..+-..  +-.+ .
T Consensus        17 d~afkPDGsqL~lAA-g~rlliyD~ndG~ll-qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~LkY-S   91 (1081)
T KOG1538|consen   17 DIAFKPDGTQLILAA-GSRLLVYDTSDGTLL-QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--ILKY-S   91 (1081)
T ss_pred             eeEECCCCceEEEec-CCEEEEEeCCCcccc-cccccccceEEEEEEccCCceeccCCCceeEEEecccccc--eeee-c
Confidence            7999999999 5444 456999999877554 477899999999999999966 999999999999875431  2222 4


Q ss_pred             cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeE-EEE-cCCCEEEEEc-CCcEEEEEcCCCceeee
Q 021744          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG-CMI-SEGPWIFIGV-TNFVKAWNTQTNTDLSL  225 (308)
Q Consensus       149 h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~-~~~-~~~~~l~~~~-d~~i~~wd~~~~~~~~~  225 (308)
                      |.+.|.||.|+|-...|+||+-. ..-+|..... .+...+....+. |.+ .||++++.|. +|+|.+-+-...+...+
T Consensus        92 H~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK-~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I  169 (1081)
T KOG1538|consen   92 HNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK-SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKI  169 (1081)
T ss_pred             cCCeeeEeecCchHHHhhhcchh-hccccChhhh-hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEE
Confidence            99999999999999999999874 4678876533 222223223333 333 6899999997 99999886554444443


Q ss_pred             e---CCCCCEEEEEEeCC-------EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          226 S---GPVGQVYAMAVGND-------LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       226 ~---~~~~~v~~~~~~~~-------~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      .   +..++|++++|+|.       +++......++.++.+...     .+..-..-.-...| .+.++|.+++.++
T Consensus       170 ~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-----~Igk~r~L~FdP~CisYf~NGEy~LiGG  241 (1081)
T KOG1538|consen  170 ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-----QIGKDRALNFDPCCISYFTNGEYILLGG  241 (1081)
T ss_pred             eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-----eecccccCCCCchhheeccCCcEEEEcc
Confidence            3   46789999999985       8888888999999988763     33322222223344 8889999988555

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=8.4e-14  Score=122.52  Aligned_cols=252  Identities=11%  Similarity=0.007  Sum_probs=152.9

Q ss_pred             CceeEEEeecCCCCCCCCCCceEEecC----CCeEEEeecCCCCCCCCCcccccCCCCCCcccccc-c-eeEEecCCCe-
Q 021744            8 GNKRVFHRLGGGGGDGGGGGLSTADTR----QKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGA-A-AKRFANNTWG-   80 (308)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~s~s~----d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~-~-~i~~s~~g~~-   80 (308)
                      ....||.++.+..+....--.+++...    ...|.+||.+..+.             .++..+.. . ..+|+|||+. 
T Consensus       147 ~~d~i~~~ltg~~g~f~~riayv~~~~~~~~~~~l~~~d~dg~~~-------------~~lt~~~~~~~~p~wSPDG~~l  213 (429)
T PRK03629        147 ASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-------------FVVHRSPQPLMSPAWSPDGSKL  213 (429)
T ss_pred             HHHHHHHHhcCCCCccCCeEEEEEeeCCCCcceeEEEEcCCCCCC-------------EEeecCCCceeeeEEcCCCCEE
Confidence            334556666666555443222222222    23688888775511             11111111 1 6899999998 


Q ss_pred             eecc---CCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EE-eeCCC--eEEEEEcCCCceeeeEeeCcccce
Q 021744           81 RNNN---FNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MY-GEKCK--FLHSWTVGDGFKLLTQLEGHQKVV  153 (308)
Q Consensus        81 ~s~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-g~~d~--~i~iwd~~~~~~~~~~~~~h~~~v  153 (308)
                      +..+   .+..|.+|++.+++...  ............|+|+|.. +. ...++  .|++||+.++ +. ..+..+...+
T Consensus       214 a~~s~~~g~~~i~i~dl~~G~~~~--l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg-~~-~~lt~~~~~~  289 (429)
T PRK03629        214 AYVTFESGRSALVIQTLANGAVRQ--VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-QI-RQVTDGRSNN  289 (429)
T ss_pred             EEEEecCCCcEEEEEECCCCCeEE--ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC-CE-EEccCCCCCc
Confidence            5433   34579999997765321  1112223445789999976 33 33444  5899999887 33 3444455677


Q ss_pred             EEEEEeCCCCEEEEeeCC-Cc--EEEEeCCCCeEEEEEeCCCe--eEEEEcCCCEEEEE-c-C--CcEEEEEcCCCceee
Q 021744          154 SGITLPSGSDKLYSGSKD-ET--VRVWDCASGQCAGVINLGGE--VGCMISEGPWIFIG-V-T--NFVKAWNTQTNTDLS  224 (308)
Q Consensus       154 ~~~~~~~~~~~l~s~s~d-g~--v~~wd~~~~~~~~~~~~~~~--v~~~~~~~~~l~~~-~-d--~~i~~wd~~~~~~~~  224 (308)
                      ....|+||++.|+..+.+ +.  |.++|+.+++..........  ...++|++++|+.. . +  ..|.+||+.+++...
T Consensus       290 ~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~  369 (429)
T PRK03629        290 TEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV  369 (429)
T ss_pred             CceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence            889999999988776654 44  55557776654333222222  23457899988753 3 2  368899999887765


Q ss_pred             eeCCCCCEEEEEEeCC--EEEEEcCCCe---EEEEEcCCCCcccccceeccccCCCeEE-EEec
Q 021744          225 LSGPVGQVYAMAVGND--LLFAGTQDGA---ILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR  282 (308)
Q Consensus       225 ~~~~~~~v~~~~~~~~--~l~~g~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~  282 (308)
                      +... .......|+||  .|+.++.++.   +.++++..     +....+..|...+.. +|+|
T Consensus       370 Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G-----~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        370 LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG-----RFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             eCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC-----CCeEECccCCCCcCCcccCC
Confidence            5432 23346789999  6776666654   67777754     445666677777777 8887

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.62  E-value=6.3e-14  Score=121.52  Aligned_cols=237  Identities=5%  Similarity=-0.048  Sum_probs=175.1

Q ss_pred             CCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeee
Q 021744           35 QKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTD  111 (308)
Q Consensus        35 d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  111 (308)
                      +..+.++|.+.+            ....++.||...  +++++.+|+. |+|+.|+.|.+|.-.   ..+.....|...+
T Consensus        32 g~rlliyD~ndG------------~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k---lEG~LkYSH~D~I   96 (1081)
T KOG1538|consen   32 GSRLLVYDTSDG------------TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK---LEGILKYSHNDAI   96 (1081)
T ss_pred             CCEEEEEeCCCc------------ccccccccccceEEEEEEccCCceeccCCCceeEEEeccc---ccceeeeccCCee
Confidence            457899999988            456778999988  9999999999 999999999999763   2233456788889


Q ss_pred             eeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe--
Q 021744          112 ILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN--  189 (308)
Q Consensus       112 ~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~--  189 (308)
                      .++.|.|-...+..+.=...-+|......  +...+ ....+.+++|..||++++.|-.+|+|.+-+-. ++....+.  
T Consensus        97 QCMsFNP~~h~LasCsLsdFglWS~~qK~--V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rp  172 (1081)
T KOG1538|consen   97 QCMSFNPITHQLASCSLSDFGLWSPEQKS--VSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERP  172 (1081)
T ss_pred             eEeecCchHHHhhhcchhhccccChhhhh--HHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCC
Confidence            99999998866444444556788876652  22222 34678899999999999999999999998744 55554554  


Q ss_pred             --CCCeeEEEE--cC-----CCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcC
Q 021744          190 --LGGEVGCMI--SE-----GPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN  257 (308)
Q Consensus       190 --~~~~v~~~~--~~-----~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~  257 (308)
                        ..+++.++.  |.     ...+++.. ..++.+|.+.....-.-..-.-...|+.+.++  +++.|+.|+.+++|--.
T Consensus       173 gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~  252 (1081)
T KOG1538|consen  173 GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD  252 (1081)
T ss_pred             CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec
Confidence              345666552  22     23566555 77888888765433333333445678888888  99999999999999755


Q ss_pred             CCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEE
Q 021744          258 VTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIM  295 (308)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i  295 (308)
                      .     -.+.++-....+|+. +..|++++++.+| +.+|
T Consensus       253 G-----vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTi  287 (1081)
T KOG1538|consen  253 G-----VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTI  287 (1081)
T ss_pred             C-----eEEeeccccceeEEEEEEccCCceEEEEEccCee
Confidence            4     456666667889999 9999999998766 4444

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.62  E-value=9.2e-13  Score=112.47  Aligned_cols=237  Identities=10%  Similarity=0.086  Sum_probs=141.4

Q ss_pred             CCce-EEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eecc-CCCcEEEEECCCCCCccc
Q 021744           26 GGLS-TADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNN-FNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~-~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~-~d~~i~vwd~~~~~~~~~  102 (308)
                      +..| +++..++.|.+|+.....+.  ... ...+    ..++ ...++++|+++. ++++ .++.|.+|++++......
T Consensus        46 ~~~lyv~~~~~~~i~~~~~~~~g~l--~~~-~~~~----~~~~-p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~  117 (330)
T PRK11028         46 KRHLYVGVRPEFRVLSYRIADDGAL--TFA-AESP----LPGS-PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA  117 (330)
T ss_pred             CCEEEEEECCCCcEEEEEECCCCce--EEe-eeec----CCCC-ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC
Confidence            4444 44556889999998632110  000 0011    1111 115999999998 5444 589999999964321111


Q ss_pred             ccc--eeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceee------eEeeCcccceEEEEEeCCCCEEEEeeC-C
Q 021744          103 NNR--AVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLL------TQLEGHQKVVSGITLPSGSDKLYSGSK-D  171 (308)
Q Consensus       103 ~~~--~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~------~~~~~h~~~v~~~~~~~~~~~l~s~s~-d  171 (308)
                      ...  ........+.++|++..  ++...++.|.+||+.+.....      ..... ......++|+|++++++++.. +
T Consensus       118 ~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~  196 (330)
T PRK11028        118 PIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELN  196 (330)
T ss_pred             ceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCC
Confidence            111  11123566778999866  455577999999997641221      11111 234578999999999987776 8


Q ss_pred             CcEEEEeCCC--C--eEEEEEe-CCC------ee--EEEEcCCCEEEEEc--CCcEEEEEcCCCc-eeeeeCC---CCCE
Q 021744          172 ETVRVWDCAS--G--QCAGVIN-LGG------EV--GCMISEGPWIFIGV--TNFVKAWNTQTNT-DLSLSGP---VGQV  232 (308)
Q Consensus       172 g~v~~wd~~~--~--~~~~~~~-~~~------~v--~~~~~~~~~l~~~~--d~~i~~wd~~~~~-~~~~~~~---~~~v  232 (308)
                      ++|.+|++..  +  +.+..+. .+.      ..  ..+.|++++++++.  ++.|.+|++.... ...+.++   ....
T Consensus       197 ~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p  276 (330)
T PRK11028        197 SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQP  276 (330)
T ss_pred             CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccC
Confidence            9999999973  3  2333332 111      11  22458899998874  6799999986543 2222222   1245


Q ss_pred             EEEEEeCC--EEEEEc-CCCeEEEEEcCCCCcccccceeccc
Q 021744          233 YAMAVGND--LLFAGT-QDGAILAWKFNVTTNCFEPAASLKV  271 (308)
Q Consensus       233 ~~~~~~~~--~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~  271 (308)
                      ..+.++|+  +|+++. .+++|.+|++......+..+..+..
T Consensus       277 ~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~  318 (330)
T PRK11028        277 RGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAV  318 (330)
T ss_pred             CceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcccccc
Confidence            67899999  665554 4899999998643322234444443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.60  E-value=2.4e-12  Score=112.34  Aligned_cols=222  Identities=21%  Similarity=0.307  Sum_probs=165.4

Q ss_pred             ccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCC-Ccccccce-eeeeeeeeee-ecCCc-e-EE-eeCCCeEEEE
Q 021744           64 ATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSK-NSNINNRA-VIKTDILCRN-WVQGN-C-MY-GEKCKFLHSW  134 (308)
Q Consensus        64 ~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~-~~~~~~~~-~~~~~~~~~~-~~~~~-~-~~-g~~d~~i~iw  134 (308)
                      ..+|...  .+.+.+.+.. +.++.|+.+.+|+..... ... .... +...+..... .+++. . +. +..|+.+++|
T Consensus        61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK-SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE-EEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            3455555  7888999988 888899999999997664 221 2222 1113333333 55555 3 33 3448999999


Q ss_pred             EcCC-CceeeeEeeCcccceEEEEEeCCCCEEEEeeC-CCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCC-EEEE-E
Q 021744          135 TVGD-GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGP-WIFI-G  207 (308)
Q Consensus       135 d~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~-~l~~-~  207 (308)
                      +... . .....+..|...|..++|+|++..+++++. |+.+++|++..+..+..+. +...+.++  .+++. .+++ +
T Consensus       140 ~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  218 (466)
T COG2319         140 DLSTPG-KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS  218 (466)
T ss_pred             EecCCC-eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence            9998 5 678888999999999999999998888886 9999999999988888777 56677766  35666 4444 3


Q ss_pred             cCCcEEEEEcCCCceee--eeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEec
Q 021744          208 VTNFVKAWNTQTNTDLS--LSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR  282 (308)
Q Consensus       208 ~d~~i~~wd~~~~~~~~--~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~  282 (308)
                      .|+.|++||...+....  +..|.... ...|+|+  .+++++.|+.+++|++....   ..+..+..|...+.. .|.|
T Consensus       219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~  294 (466)
T COG2319         219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSS---SLLRTLSGHSSSVLSVAFSP  294 (466)
T ss_pred             CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCC---cEEEEEecCCccEEEEEECC
Confidence            49999999998776663  77777765 4478888  78899999999999999763   223333677889998 9999


Q ss_pred             CCCeEEEee
Q 021744          283 DVTSLLGSV  291 (308)
Q Consensus       283 d~~~l~~s~  291 (308)
                      ++..++++.
T Consensus       295 ~~~~~~~~~  303 (466)
T COG2319         295 DGKLLASGS  303 (466)
T ss_pred             CCCEEEEee
Confidence            888877633

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.59  E-value=1.2e-13  Score=107.25  Aligned_cols=230  Identities=13%  Similarity=0.055  Sum_probs=155.1

Q ss_pred             cccccc--eeEEecCCCeeeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCc--
Q 021744           65 TANGAA--AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGF--  140 (308)
Q Consensus        65 ~gh~~~--~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~--  140 (308)
                      ++|...  ++.|-.++...+|..-|.|++|++.+..........+...+..+..-|.+.+.+-+.|..+.+|++.-..  
T Consensus        11 Rp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i   90 (323)
T KOG0322|consen   11 RPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFI   90 (323)
T ss_pred             ccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceE
Confidence            355555  6777777766999999999999997776554333345555666777777777888889999999876421  


Q ss_pred             ---------------------eee-eEe----------------------------eCcccceEEEEEeC-CCC--EEEE
Q 021744          141 ---------------------KLL-TQL----------------------------EGHQKVVSGITLPS-GSD--KLYS  167 (308)
Q Consensus       141 ---------------------~~~-~~~----------------------------~~h~~~v~~~~~~~-~~~--~l~s  167 (308)
                                           +.. +.+                            .+..+.+.+..+.. ++.  +++.
T Consensus        91 ~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~llla  170 (323)
T KOG0322|consen   91 SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLA  170 (323)
T ss_pred             EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEE
Confidence                                 000 000                            01124566666543 233  3678


Q ss_pred             eeCCCcEEEEeCCCCeEEEEEe-----------CCCeeEEEEcC--CCEEEEEc-CCcEEEEEcCC--Ccee---eeeCC
Q 021744          168 GSKDETVRVWDCASGQCAGVIN-----------LGGEVGCMISE--GPWIFIGV-TNFVKAWNTQT--NTDL---SLSGP  228 (308)
Q Consensus       168 ~s~dg~v~~wd~~~~~~~~~~~-----------~~~~v~~~~~~--~~~l~~~~-d~~i~~wd~~~--~~~~---~~~~~  228 (308)
                      |-++|.|.+||+.++..+-.++           +..++.++..+  -..=++|+ +..+..|.+..  +.+.   .+.-.
T Consensus       171 GyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk  250 (323)
T KOG0322|consen  171 GYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK  250 (323)
T ss_pred             eccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEec
Confidence            8899999999999974444333           44455544222  11112233 55777787754  3332   23333


Q ss_pred             CCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE-eeceEEEEe
Q 021744          229 VGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG-SVSFIMFIG  298 (308)
Q Consensus       229 ~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~-s~s~~i~~~  298 (308)
                      ...|..+.+-||  ++|+++.|++|++|+.++.    +++..++-|...|++ +|+||..++++ |.+..|-+|
T Consensus       251 npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl----~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLW  320 (323)
T KOG0322|consen  251 NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL----NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLW  320 (323)
T ss_pred             CCCccceEEccCCcEEeecccCCcEEEEEeccC----CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEee
Confidence            446788889999  9999999999999999997    889999999999999 99999777774 446555554

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.59  E-value=1.7e-13  Score=112.26  Aligned_cols=149  Identities=16%  Similarity=0.244  Sum_probs=116.1

Q ss_pred             eeEEecCCC-e-eeccCCCcEEEEECCCCCCccc--------ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcC--
Q 021744           71 AKRFANNTW-G-RNNNFNNHSNNYRAGNSKNSNI--------NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVG--  137 (308)
Q Consensus        71 ~i~~s~~g~-~-~s~~~d~~i~vwd~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~--  137 (308)
                      .+.|.++.. . |||+.|..||+|.++..++...        .+..|...+..+.|+|+|.. ++|+.+|.|.+|-..  
T Consensus        18 s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~   97 (434)
T KOG1009|consen   18 SVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV   97 (434)
T ss_pred             EEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence            677877766 5 9999999999999976654431        34567788999999999977 899999999999876  


Q ss_pred             ------C-----C--ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEEE--cCC
Q 021744          138 ------D-----G--FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCMI--SEG  201 (308)
Q Consensus       138 ------~-----~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~~--~~~  201 (308)
                            +     .  ....+.+.+|...|..++|+|++.++++++.|.++++||+..|+.+..+. |..-+..+.  |-+
T Consensus        98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~  177 (434)
T KOG1009|consen   98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLN  177 (434)
T ss_pred             CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhh
Confidence                  2     1  13456678899999999999999999999999999999999999988877 555555442  446


Q ss_pred             CEEEE-EcCCcEEEEEcCC
Q 021744          202 PWIFI-GVTNFVKAWNTQT  219 (308)
Q Consensus       202 ~~l~~-~~d~~i~~wd~~~  219 (308)
                      +++++ +.|...+.+++..
T Consensus       178 qyv~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  178 QYVASKSSDRHPEGFSAKL  196 (434)
T ss_pred             hhhhhhccCcccceeeeee
Confidence            66664 3355555555443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.5e-13  Score=121.45  Aligned_cols=202  Identities=11%  Similarity=0.049  Sum_probs=128.7

Q ss_pred             eeEEecCCCe-eeccCC---CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCC--eEEEEEcCCCcee
Q 021744           71 AKRFANNTWG-RNNNFN---NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCK--FLHSWTVGDGFKL  142 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~--~i~iwd~~~~~~~  142 (308)
                      ..+|+|||+. +..+.+   ..|.+||+.+++..  .............|+|+|..  ++.+.++  .|++||+.++ + 
T Consensus       208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~--~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g-~-  283 (433)
T PRK04922        208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE--LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR-Q-  283 (433)
T ss_pred             cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC-C-
Confidence            6799999998 655533   46999999776542  11222223446789999965  3344444  6999999887 3 


Q ss_pred             eeEeeCcccceEEEEEeCCCCEEEEeeC-CCc--EEEEeCCCCeEEEEEeCCCe--eEEEEcCCCEEEEEc--CC--cEE
Q 021744          143 LTQLEGHQKVVSGITLPSGSDKLYSGSK-DET--VRVWDCASGQCAGVINLGGE--VGCMISEGPWIFIGV--TN--FVK  213 (308)
Q Consensus       143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~--v~~wd~~~~~~~~~~~~~~~--v~~~~~~~~~l~~~~--d~--~i~  213 (308)
                      ...+..+.......+|+||++.|+..+. ++.  |.++|+.+++..........  ...+++++++++...  ++  .|.
T Consensus       284 ~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~  363 (433)
T PRK04922        284 LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIA  363 (433)
T ss_pred             eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEE
Confidence            3455556556678899999998877664 444  66777777654332222222  235578999888543  32  699


Q ss_pred             EEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcC---CCeEEEEEcCCCCcccccceeccccCCCeEE-EEec
Q 021744          214 AWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ---DGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR  282 (308)
Q Consensus       214 ~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~  282 (308)
                      +||+.+++...+.. ........|+||  .++..+.   .+.|.++++..     .....+..+...+.. +|+|
T Consensus       364 v~d~~~g~~~~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-----~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        364 VMDLSTGSVRTLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-----RVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             EEECCCCCeEECCC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-----CceEEcccCCCCCCCCccCC
Confidence            99999887765442 224456789999  4444443   23577777754     334445444555666 7765

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.59  E-value=1.4e-13  Score=116.54  Aligned_cols=206  Identities=13%  Similarity=0.102  Sum_probs=153.2

Q ss_pred             CCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC
Q 021744           23 GGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN   99 (308)
Q Consensus        23 ~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~   99 (308)
                      +.+...++-++.||.+-+-+-...             .-.....|.++  +-+|+|||.- ++++.||.|++|... | .
T Consensus        72 g~~~d~~~i~s~DGkf~il~k~~r-------------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-G-M  136 (737)
T KOG1524|consen   72 GKGSDTLLICSNDGRFVILNKSAR-------------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-G-M  136 (737)
T ss_pred             CCCcceEEEEcCCceEEEecccch-------------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-c-h
Confidence            445678888999999888764432             11223567777  7899999998 999999999999863 2 1


Q ss_pred             cccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744          100 SNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC  179 (308)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~  179 (308)
                      +..........+.++++-|+.+.+.=+..+.+.|=.+.-. ..+-..+.|.+-|.++.|++....+++|++|-..++||.
T Consensus       137 LRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n-~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~  215 (737)
T KOG1524|consen  137 LRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAAN-SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA  215 (737)
T ss_pred             HHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccc-cceeEEeccCcEEEEeecCccccceeecCCceeEEeecc
Confidence            2223344455689999999887655556677777666655 445578899999999999999999999999999999996


Q ss_pred             CCCeEEEEEe-CCCeeEEE-EcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEE
Q 021744          180 ASGQCAGVIN-LGGEVGCM-ISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK  255 (308)
Q Consensus       180 ~~~~~~~~~~-~~~~v~~~-~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd  255 (308)
                      . |+.+..-. ++.+++++ +.+.+.+++++-+++++=          ....+.|..++||+|  .++.|+..|.+.+-.
T Consensus       216 ~-G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  216 Q-GANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFS----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAY  284 (737)
T ss_pred             c-CcccccCChhccceeeeeeccccceeeeeeeeeeec----------CCCccceEEEEEcCCCceeeccccCceEEEee
Confidence            6 55555544 88889988 444477777777766622          123568999999999  788888888776543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=1.2e-12  Score=100.65  Aligned_cols=222  Identities=10%  Similarity=0.089  Sum_probs=145.8

Q ss_pred             CceEEecCCCeEEEeecCCCCC-CCCCcccccCCCCCC-cccccc-ceeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNR-FPCPYLHRELPLPPA-ATANGA-AAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~~~~~~~-~~gh~~-~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      .++.+++ ||.|+-|......+ ..|.-+.+.++.... ...-.. +++...|..+. +.++.|+.+.-||+++++.. .
T Consensus        73 ~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~-r  150 (325)
T KOG0649|consen   73 DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQ-R  150 (325)
T ss_pred             hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEE-E
Confidence            4455555 59999998765433 233333322211111 000011 17888888777 88889999999999998643 4


Q ss_pred             ccceeeeeeeeeee-ecCCceEEeeCCCeEEEEEcCCCceeeeEeeC---------c-ccceEEEEEeCCCCEEEEeeCC
Q 021744          103 NNRAVIKTDILCRN-WVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEG---------H-QKVVSGITLPSGSDKLYSGSKD  171 (308)
Q Consensus       103 ~~~~~~~~~~~~~~-~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~---------h-~~~v~~~~~~~~~~~l~s~s~d  171 (308)
                      ..++|...+.++.- ...+..++|++||++|+||.++. +.+..+..         | ...|-+++.+  ...++.|+ .
T Consensus       151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~-k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-G  226 (325)
T KOG0649|consen  151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQ-KHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-G  226 (325)
T ss_pred             EEcCCcceeeeeeecccCcceeecCCCccEEEEecccc-ceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-C
Confidence            66788888887776 56668899999999999999998 55555532         1 1345566655  44666654 4


Q ss_pred             CcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEE-EcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC---EEEEEcC
Q 021744          172 ETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFI-GVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQ  247 (308)
Q Consensus       172 g~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~  247 (308)
                      ..+.+|++++.++...+..+.++..+......+++ |..+.+.-|.+..--...........++..++..   ++-.++.
T Consensus       227 p~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~  306 (325)
T KOG0649|consen  227 PKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGF  306 (325)
T ss_pred             CceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEeccc
Confidence            67999999999999999988888877555555554 4467888887754322233333334555555443   5555666


Q ss_pred             CCeEEEE
Q 021744          248 DGAILAW  254 (308)
Q Consensus       248 dg~i~iw  254 (308)
                      ..++.|+
T Consensus       307 s~~~~i~  313 (325)
T KOG0649|consen  307 SNKLHIL  313 (325)
T ss_pred             ceeeeee
Confidence            6666665

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.58  E-value=6.3e-14  Score=118.57  Aligned_cols=163  Identities=12%  Similarity=0.168  Sum_probs=130.9

Q ss_pred             ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE-E
Q 021744          121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM-I  198 (308)
Q Consensus       121 ~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~-~  198 (308)
                      .++..+.||.+.+.+-. + +..+....|.+.+.+-.|+|||.-|+++++||.|++|. ++|....++. .+.++.|+ +
T Consensus        77 ~~~i~s~DGkf~il~k~-~-rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W  153 (737)
T KOG1524|consen   77 TLLICSNDGRFVILNKS-A-RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW  153 (737)
T ss_pred             eEEEEcCCceEEEeccc-c-hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence            34778889999887643 3 45667788999999999999999999999999999998 5565555544 66778877 3


Q ss_pred             -cCCCEEEEEcCCcEEEEEcCCCce-eeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCC
Q 021744          199 -SEGPWIFIGVTNFVKAWNTQTNTD-LSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTD  274 (308)
Q Consensus       199 -~~~~~l~~~~d~~i~~wd~~~~~~-~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  274 (308)
                       |+.+-++-+..+.+.+=.+..... +..++|.+-|.++.|++.  ++++|++|-+.++||...     +.+.....|..
T Consensus       154 ~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-----~~Lf~S~~~ey  228 (737)
T KOG1524|consen  154 APNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-----ANLFTSAAEEY  228 (737)
T ss_pred             CCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-----cccccCChhcc
Confidence             666666666667777777765544 488999999999999987  999999999999999876     66777778888


Q ss_pred             CeEE-EEecCCCeEEEee
Q 021744          275 SNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       275 ~v~~-~~s~d~~~l~~s~  291 (308)
                      +|++ +|.||..+++.|.
T Consensus       229 ~ITSva~npd~~~~v~S~  246 (737)
T KOG1524|consen  229 AITSVAFNPEKDYLLWSY  246 (737)
T ss_pred             ceeeeeeccccceeeeee
Confidence            9988 9999977777665

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.56  E-value=5.6e-12  Score=100.49  Aligned_cols=219  Identities=11%  Similarity=0.102  Sum_probs=146.9

Q ss_pred             eeEEecCCCeeeccCCCcEEEEECCCCCCcccccceeeeeeeeeee-ecCCce-EEeeCC------CeEEEEEcCCCcee
Q 021744           71 AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRN-WVQGNC-MYGEKC------KFLHSWTVGDGFKL  142 (308)
Q Consensus        71 ~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~g~~d------~~i~iwd~~~~~~~  142 (308)
                      .++|+.|...++.+.|.-.|||+.+.-+..... ..+......+.. +-.+.+ +.|+.+      +.+.|||=... ..
T Consensus        10 svs~NQD~ScFava~~~Gfriyn~~P~ke~~~r-~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~-~~   87 (346)
T KOG2111|consen   10 SVSFNQDHSCFAVATDTGFRIYNCDPFKESASR-QFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE-RC   87 (346)
T ss_pred             EEEEccCCceEEEEecCceEEEecCchhhhhhh-ccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC-cE
Confidence            478888888844444544899999753221111 111111111111 111222 344433      68999994444 56


Q ss_pred             eeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC-CCeEEEEEe---CCCeeEEEEcC--CCEEEE-Ec-CCcEEE
Q 021744          143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA-SGQCAGVIN---LGGEVGCMISE--GPWIFI-GV-TNFVKA  214 (308)
Q Consensus       143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~-~~~~~~~~~---~~~~v~~~~~~--~~~l~~-~~-d~~i~~  214 (308)
                      +.++. -..+|.++.+.++  .++..- .+.|++|... +-+.+..+.   .+.-..++.+.  ..+|+. |. -|.|++
T Consensus        88 i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi  163 (346)
T KOG2111|consen   88 IIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQI  163 (346)
T ss_pred             EEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEE
Confidence            66665 5689999999876  455544 4789999988 456666665   23334555543  334443 33 789999


Q ss_pred             EEcCCCce---eeeeCCCCCEEEEEEeCC--EEEEEcCCCe-EEEEEcCCCCcccccceeccc--cCCCeEE-EEecCCC
Q 021744          215 WNTQTNTD---LSLSGPVGQVYAMAVGND--LLFAGTQDGA-ILAWKFNVTTNCFEPAASLKV--HTDSNRA-HFSRDVT  285 (308)
Q Consensus       215 wd~~~~~~---~~~~~~~~~v~~~~~~~~--~l~~g~~dg~-i~iwd~~~~~~~~~~~~~~~~--~~~~v~~-~~s~d~~  285 (308)
                      -|+...+.   ..+.+|.+.|.|++.+.+  .+|++|..|+ |||||..++    .++.++..  ....+.+ +|||+..
T Consensus       164 ~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g----~~l~E~RRG~d~A~iy~iaFSp~~s  239 (346)
T KOG2111|consen  164 VDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG----TLLQELRRGVDRADIYCIAFSPNSS  239 (346)
T ss_pred             EEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC----cEeeeeecCCchheEEEEEeCCCcc
Confidence            99987766   588999999999999988  9999999998 799999998    77777763  3446778 9999999


Q ss_pred             eEEEee---ceEEEEee
Q 021744          286 SLLGSV---SFIMFIGQ  299 (308)
Q Consensus       286 ~l~~s~---s~~i~~~~  299 (308)
                      +|++++   .+.||-..
T Consensus       240 ~LavsSdKgTlHiF~l~  256 (346)
T KOG2111|consen  240 WLAVSSDKGTLHIFSLR  256 (346)
T ss_pred             EEEEEcCCCeEEEEEee
Confidence            999877   56666554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.56  E-value=1.1e-12  Score=119.18  Aligned_cols=226  Identities=12%  Similarity=0.101  Sum_probs=153.7

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccce--eeeeeeeeeeecCC---ceEEeeCCCeEEEEEcCCC----c
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRA--VIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDG----F  140 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~g~~d~~i~iwd~~~~----~  140 (308)
                      .+.|+|=... +++...-.|+|||.+.++.+.....+  ....|..+.+-..-   ..++++.||.|+||+-...    .
T Consensus      1069 ~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~ 1148 (1387)
T KOG1517|consen 1069 TLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKP 1148 (1387)
T ss_pred             eeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCc
Confidence            5788888888 77776678999999877654332211  12235555554433   2389999999999985422    1


Q ss_pred             eeeeEee---C----cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe--CCCeeEEEEc---CCCEEEEEc
Q 021744          141 KLLTQLE---G----HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN--LGGEVGCMIS---EGPWIFIGV  208 (308)
Q Consensus       141 ~~~~~~~---~----h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~--~~~~v~~~~~---~~~~l~~~~  208 (308)
                      +.+..+.   +    -.+.=.-++|.....+|++++.-..|+|||....+.+..+.  ....++++++   .+..+++|.
T Consensus      1149 eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGf 1228 (1387)
T KOG1517|consen 1149 ELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGF 1228 (1387)
T ss_pred             eeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEee
Confidence            2222221   1    12222456787776777777778999999999988888877  3445666653   478899987


Q ss_pred             -CCcEEEEEcCCCce---e-eeeCCCCC--EEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceecccc---CCC
Q 021744          209 -TNFVKAWNTQTNTD---L-SLSGPVGQ--VYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH---TDS  275 (308)
Q Consensus       209 -d~~i~~wd~~~~~~---~-~~~~~~~~--v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~  275 (308)
                       ||.|++||.+....   + ....|...  |..+.+.+.   .|++|+.||.|++||++....  +...++..|   .+.
T Consensus      1229 aDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~--e~~~~iv~~~~yGs~ 1306 (1387)
T KOG1517|consen 1229 ADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK--ETFLTIVAHWEYGSA 1306 (1387)
T ss_pred             cCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc--cccceeeeccccCcc
Confidence             99999999987654   2 56678776  999999886   699999999999999998421  222223332   234


Q ss_pred             eEE-EEecCCCeEEEee--ceEEEEe
Q 021744          276 NRA-HFSRDVTSLLGSV--SFIMFIG  298 (308)
Q Consensus       276 v~~-~~s~d~~~l~~s~--s~~i~~~  298 (308)
                      .++ ..+++...+++++  .+.||..
T Consensus      1307 lTal~VH~hapiiAsGs~q~ikIy~~ 1332 (1387)
T KOG1517|consen 1307 LTALTVHEHAPIIASGSAQLIKIYSL 1332 (1387)
T ss_pred             ceeeeeccCCCeeeecCcceEEEEec
Confidence            777 8888888887554  3444443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.56  E-value=1.1e-14  Score=120.92  Aligned_cols=216  Identities=14%  Similarity=0.125  Sum_probs=166.6

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCc
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGH  149 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h  149 (308)
                      .+.++.+|.+ +.|+.-|.|..+|..+.+..  ........+..+.|.....++.......++|||-...  -++.++.|
T Consensus       134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~--~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~Gt--ElHClk~~  209 (545)
T KOG1272|consen  134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH--FEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGT--ELHCLKRH  209 (545)
T ss_pred             eeeecCCccEEEecCCccceeeeecccceee--eeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCc--EEeehhhc
Confidence            5889999999 99999999999999877554  2222333477788888887777778899999996543  36666644


Q ss_pred             ccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC-CCeeEEEE--cCCCEEEEEc-CCcEEEEEcCCCcee-e
Q 021744          150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-GGEVGCMI--SEGPWIFIGV-TNFVKAWNTQTNTDL-S  224 (308)
Q Consensus       150 ~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~-~~~v~~~~--~~~~~l~~~~-d~~i~~wd~~~~~~~-~  224 (308)
                       ..|..+.|-|-.-+|++++..|.++.-|+.+|+.+..+.. .+.+..+.  |-+..+-.|. .|+|.+|.....+++ .
T Consensus       210 -~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK  288 (545)
T KOG1272|consen  210 -IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK  288 (545)
T ss_pred             -CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH
Confidence             6789999999888899999999999999999999998883 34444553  3345555776 899999999998887 8


Q ss_pred             eeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee--ceEEEE
Q 021744          225 LSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV--SFIMFI  297 (308)
Q Consensus       225 ~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~--s~~i~~  297 (308)
                      +..|.++|.++++.++  +++|.+.|+.++|||++..    ..+.++.. ..+... +||.-| +|+.+.  -+.||.
T Consensus       289 iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~----~ql~t~~t-p~~a~~ls~Sqkg-lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  289 ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF----YQLHTYRT-PHPASNLSLSQKG-LLALSYGDHVQIWK  360 (545)
T ss_pred             HHhcCCCcceEEECCCCcEEeecccccceeEeeeccc----cccceeec-CCCcccccccccc-ceeeecCCeeeeeh
Confidence            8899999999999999  9999999999999999986    44444443 334444 787666 444444  344443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=6.2e-13  Score=113.49  Aligned_cols=215  Identities=12%  Similarity=0.146  Sum_probs=153.5

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEECCCCCCc----------cc-----------------ccceeee-------ee---
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKNS----------NI-----------------NNRAVIK-------TD---  111 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~----------~~-----------------~~~~~~~-------~~---  111 (308)
                      .|.++|||.|  |+|.+--.|++||+..-..-          ..                 ...-|..       .+   
T Consensus        56 ~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~  135 (703)
T KOG2321|consen   56 RIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKF  135 (703)
T ss_pred             eeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcC
Confidence            7999999999  99999999999999643210          00                 0000000       00   


Q ss_pred             -eeeeee-cCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe
Q 021744          112 -ILCRNW-VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN  189 (308)
Q Consensus       112 -~~~~~~-~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~  189 (308)
                       ..+.++ +...+..++....|+-++++.+ ..+..|....+.++++..++...+|++|+.+|.|.+||.++...+..+.
T Consensus       136 GRDm~y~~~scDly~~gsg~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~  214 (703)
T KOG2321|consen  136 GRDMKYHKPSCDLYLVGSGSEVYRLNLEQG-RFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLD  214 (703)
T ss_pred             CccccccCCCccEEEeecCcceEEEEcccc-ccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeee
Confidence             011111 1112355666778888899999 7888888778999999999999999999999999999999988887776


Q ss_pred             CCCe------------eEEE-EcC-CCEEEEEc-CCcEEEEEcCCCceeeeeCCC--CCEEEEEEeCC---EEEEEcCCC
Q 021744          190 LGGE------------VGCM-ISE-GPWIFIGV-TNFVKAWNTQTNTDLSLSGPV--GQVYAMAVGND---LLFAGTQDG  249 (308)
Q Consensus       190 ~~~~------------v~~~-~~~-~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~--~~v~~~~~~~~---~l~~g~~dg  249 (308)
                      ....            ++++ +.+ |-.+++|. +|.+.+||+++.+++....|.  -+|..+.|.+.   --+...+..
T Consensus       215 ~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~  294 (703)
T KOG2321|consen  215 AASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKR  294 (703)
T ss_pred             cccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchH
Confidence            3222            5555 344 77788887 999999999999988666665  47888988665   333345567


Q ss_pred             eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          250 AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      .++|||-.++    ++...++. ...++. ++-|++.+++.+-
T Consensus       295 ~~kiWd~~~G----k~~asiEp-t~~lND~C~~p~sGm~f~An  332 (703)
T KOG2321|consen  295 ILKIWDECTG----KPMASIEP-TSDLNDFCFVPGSGMFFTAN  332 (703)
T ss_pred             HhhhcccccC----Cceeeccc-cCCcCceeeecCCceEEEec
Confidence            8999999987    55565654 344777 8888877766554

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=1.1e-13  Score=117.76  Aligned_cols=226  Identities=14%  Similarity=0.127  Sum_probs=156.1

Q ss_pred             eeEEecCCCe---eeccCCCcEEEE--ECCCCC-------------------CcccccceeeeeeeeeeeecCCc-eEEe
Q 021744           71 AKRFANNTWG---RNNNFNNHSNNY--RAGNSK-------------------NSNINNRAVIKTDILCRNWVQGN-CMYG  125 (308)
Q Consensus        71 ~i~~s~~g~~---~s~~~d~~i~vw--d~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~g  125 (308)
                      .+++.|.+..   ++...|...++|  +++...                   .+......|...++...|.+... ++++
T Consensus       233 ~i~~~~~~~k~~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~  312 (577)
T KOG0642|consen  233 EITNPPEGTKSISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITA  312 (577)
T ss_pred             cccCCcccCCCccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEe
Confidence            5667666655   455555667888  442110                   01112233444466667766654 4899


Q ss_pred             eCCCeEEEEEcCCC-------ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCe----------EEEEE
Q 021744          126 EKCKFLHSWTVGDG-------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ----------CAGVI  188 (308)
Q Consensus       126 ~~d~~i~iwd~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~----------~~~~~  188 (308)
                      +.|++|++|+++..       .+++.+|++|.++|.|+++.+++.++++|+-||+|+.|++...+          ....+
T Consensus       313 sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l  392 (577)
T KOG0642|consen  313 SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTL  392 (577)
T ss_pred             ccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccce
Confidence            99999999999321       26788999999999999999999999999999999999665321          11122


Q ss_pred             e-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-----------------------------------------
Q 021744          189 N-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-----------------------------------------  223 (308)
Q Consensus       189 ~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-----------------------------------------  223 (308)
                      . |...+..+  ++....|++++ ||++++|+.....+.                                         
T Consensus       393 ~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~  472 (577)
T KOG0642|consen  393 LGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVV  472 (577)
T ss_pred             eccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhh
Confidence            2 55566544  34445566554 999999986543210                                         


Q ss_pred             ----eee-------CCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE
Q 021744          224 ----SLS-------GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG  289 (308)
Q Consensus       224 ----~~~-------~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~  289 (308)
                          .+.       .....+.-+..+|.  +.+++..|+.|+++|..++    .++.....|...+++ ++.|+|-+|+.
T Consensus       473 s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~----~~l~s~~a~~~svtslai~~ng~~l~s  548 (577)
T KOG0642|consen  473 SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG----KILHSMVAHKDSVTSLAIDPNGPYLMS  548 (577)
T ss_pred             hheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc----ccchheeeccceecceeecCCCceEEe
Confidence                000       00124555666676  8999999999999999997    888999999999999 99999999995


Q ss_pred             ee-ceEEEEeec
Q 021744          290 SV-SFIMFIGQN  300 (308)
Q Consensus       290 s~-s~~i~~~~~  300 (308)
                      +. +..+.++..
T Consensus       549 ~s~d~sv~l~kl  560 (577)
T KOG0642|consen  549 GSHDGSVRLWKL  560 (577)
T ss_pred             ecCCceeehhhc
Confidence            54 666655554

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.52  E-value=3.4e-13  Score=106.12  Aligned_cols=178  Identities=15%  Similarity=0.185  Sum_probs=126.0

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCC--CCCCccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCCC
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELP--LPPAATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSKN   99 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~--~~~~~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~   99 (308)
                      .++|.++|-|.|+.|||..++           .+  ....+..|...  .|+|...+..  |+.+.||+||++|+...+-
T Consensus       163 p~~igtSSiDTTCTiWdie~~-----------~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH  231 (364)
T KOG0290|consen  163 PNLIGTSSIDTTCTIWDIETG-----------VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH  231 (364)
T ss_pred             cceeEeecccCeEEEEEEeec-----------cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence            468999999999999999887           22  23445677777  8999987665  9999999999999965432


Q ss_pred             ccccccee--eeeeeeeeeecCC-ce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCC-CCEEEEeeCCCc
Q 021744          100 SNINNRAV--IKTDILCRNWVQG-NC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDET  173 (308)
Q Consensus       100 ~~~~~~~~--~~~~~~~~~~~~~-~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~  173 (308)
                      ........  ......+.+++.. ++  ..+-....|.|.|++....++..+++|++.|..++|.|. ...+.|++.|..
T Consensus       232 STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q  311 (364)
T KOG0290|consen  232 STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ  311 (364)
T ss_pred             ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce
Confidence            21111111  2224445555555 22  234556789999999776789999999999999999985 478999999999


Q ss_pred             EEEEeCCCCe------EEEEEeCCCeeEEE-E--cCCCEEEEEcCCcEEE
Q 021744          174 VRVWDCASGQ------CAGVINLGGEVGCM-I--SEGPWIFIGVTNFVKA  214 (308)
Q Consensus       174 v~~wd~~~~~------~~~~~~~~~~v~~~-~--~~~~~l~~~~d~~i~~  214 (308)
                      +.+||+..--      ++..+..++++..+ +  ....+++.+.++.+.+
T Consensus       312 aliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kklei  361 (364)
T KOG0290|consen  312 ALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEI  361 (364)
T ss_pred             EEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeeeE
Confidence            9999998532      23333355666655 2  3466777776665544

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.52  E-value=2.2e-12  Score=118.89  Aligned_cols=244  Identities=13%  Similarity=0.085  Sum_probs=154.6

Q ss_pred             ceeEEEeecCCCCC------CCCCCceEEecCCCeEEEeecCCCCCC----CCCcccccCCCCCCccccccceeEEecCC
Q 021744            9 NKRVFHRLGGGGGD------GGGGGLSTADTRQKVCNYWRAGKCNRF----PCPYLHRELPLPPAATANGAAAKRFANNT   78 (308)
Q Consensus         9 ~~~~~~~~~~~~~~------~~~~~~~~s~s~d~~i~~W~~~~~~~~----~~~~~~~~~~~~~~~~gh~~~~i~~s~~g   78 (308)
                      |++|.|.-.+.+..      +.-+++++|||.||+||+|+..+-.+.    .++.-.       ...+....++...+.+
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-------s~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-------SPEGSRVEKVTMCGNG 1110 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE-------eccCCceEEEEeccCC
Confidence            35666655444322      223589999999999999997654221    111000       0011111267778888


Q ss_pred             Ce-eeccCCCcEEEEECCCCCCcc-------cccceeeeeeeee-eeecCC-c--eEEeeCCCeEEEEEcCCCceeeeEe
Q 021744           79 WG-RNNNFNNHSNNYRAGNSKNSN-------INNRAVIKTDILC-RNWVQG-N--CMYGEKCKFLHSWTVGDGFKLLTQL  146 (308)
Q Consensus        79 ~~-~s~~~d~~i~vwd~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~-~--~~~g~~d~~i~iwd~~~~~~~~~~~  146 (308)
                      .. |.++.||.|++.+++..+...       .......+.+..+ +|.... .  .+++...+.|..||++.. .....+
T Consensus      1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~-~~~w~l 1189 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR-HDAWRL 1189 (1431)
T ss_pred             CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh-hhHHhh
Confidence            88 999999999999996521110       0111111112222 332222 2  377888899999999876 333333


Q ss_pred             e--CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCC--eeEEE--E---cCCCEEEE-Ec--CCcEEE
Q 021744          147 E--GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG--EVGCM--I---SEGPWIFI-GV--TNFVKA  214 (308)
Q Consensus       147 ~--~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~--~v~~~--~---~~~~~l~~-~~--d~~i~~  214 (308)
                      +  ...+.|++++.+|.+.++++|+..|.+.+||++-+.++..+.++.  ++..+  +   +.....++ +.  .+.|.+
T Consensus      1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred             hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence            2  245789999999999999999999999999999999998888543  34333  2   22345554 33  568999


Q ss_pred             EEcCCCcee-eeeCC-----------------C---CCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCC
Q 021744          215 WNTQTNTDL-SLSGP-----------------V---GQVYAMAVGND-LLFAGTQDGAILAWKFNVTT  260 (308)
Q Consensus       215 wd~~~~~~~-~~~~~-----------------~---~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~  260 (308)
                      |++.++... .+-..                 .   ..+.+..-.++ .+++|+.|..|+.||.....
T Consensus      1270 wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             eecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence            999988654 22111                 0   11223323344 89999999999999987653

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.52  E-value=1.5e-12  Score=103.72  Aligned_cols=191  Identities=13%  Similarity=0.128  Sum_probs=143.7

Q ss_pred             eeeeeeeeecCCce-EEeeCCCeEEEEEcCCCc--eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC-CCeE
Q 021744          109 KTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGF--KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA-SGQC  184 (308)
Q Consensus       109 ~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~-~~~~  184 (308)
                      ..+.+.+|..+... +.+.....|.||......  +..+++..|...|+.++|+|..+.|++|+.|..-++|... .++-
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W   90 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW   90 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence            34788889998866 677788899999987552  6788999999999999999999999999999999999984 3332


Q ss_pred             ---EEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-----eeeCCCCCEEEEEEeCC--EEEEEcCCCeE
Q 021744          185 ---AGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-----SLSGPVGQVYAMAVGND--LLFAGTQDGAI  251 (308)
Q Consensus       185 ---~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-----~~~~~~~~v~~~~~~~~--~l~~g~~dg~i  251 (308)
                         +..+.+....+++  +|.++.+++|+ ...|.+|-.+...--     .-+.+.+.|++++|+|+  ++++|+.|+.+
T Consensus        91 kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~  170 (361)
T KOG1523|consen   91 KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKC  170 (361)
T ss_pred             ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcce
Confidence               2233366777777  57788888887 667888877655432     33456788999999999  99999999999


Q ss_pred             EEEEcCCCC--------------cccccceeccccCCCeEE-EEecCCCeEE-EeeceEEEEee
Q 021744          252 LAWKFNVTT--------------NCFEPAASLKVHTDSNRA-HFSRDVTSLL-GSVSFIMFIGQ  299 (308)
Q Consensus       252 ~iwd~~~~~--------------~~~~~~~~~~~~~~~v~~-~~s~d~~~l~-~s~s~~i~~~~  299 (308)
                      ++|...-+.              +..+++.++....+.+.. .|+|+|..|+ ++.+..+.+..
T Consensus       171 rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d  234 (361)
T KOG1523|consen  171 RVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD  234 (361)
T ss_pred             eEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence            999743211              112333444456678888 9999999888 55565555544

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=4.3e-13  Score=112.29  Aligned_cols=265  Identities=9%  Similarity=0.021  Sum_probs=187.1

Q ss_pred             CCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCC---eeeccCCCcEEEEECC-C
Q 021744           23 GGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTW---GRNNNFNNHSNNYRAG-N   96 (308)
Q Consensus        23 ~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~---~~s~~~d~~i~vwd~~-~   96 (308)
                      ...|..++|+|.|..|.+||....           .+......||...  .-.|-|...   .++.+.||.||+=.+. +
T Consensus       151 N~~Gd~l~SgSDD~~vv~WdW~~~-----------~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t  219 (559)
T KOG1334|consen  151 NQRGDVLASGSDDLQVVVWDWVSG-----------SPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET  219 (559)
T ss_pred             cccCceeeccCccceEEeehhhcc-----------CcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence            344789999999999999999988           6666777788777  334655432   2999999999998873 3


Q ss_pred             CCCc-ccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCc--eeeeEeeCccc---ceEEEEEeCCCC-EEEE
Q 021744           97 SKNS-NINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGF--KLLTQLEGHQK---VVSGITLPSGSD-KLYS  167 (308)
Q Consensus        97 ~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~--~~~~~~~~h~~---~v~~~~~~~~~~-~l~s  167 (308)
                      +... ...+..|...+..++.-|+..+  .+++.|+.+.-+|+++..  ..+..-+.+..   ....++.+|... ++++
T Consensus       220 ~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faV  299 (559)
T KOG1334|consen  220 GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAV  299 (559)
T ss_pred             cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccccc
Confidence            3222 2234567777888888777744  889999999999998762  11222223333   467888888664 7899


Q ss_pred             eeCCCcEEEEeCCCCeE------EEEEe-------CCCeeEEE-E-cCCCEEEEE-cCCcEEEEEcCCCc----------
Q 021744          168 GSKDETVRVWDCASGQC------AGVIN-------LGGEVGCM-I-SEGPWIFIG-VTNFVKAWNTQTNT----------  221 (308)
Q Consensus       168 ~s~dg~v~~wd~~~~~~------~~~~~-------~~~~v~~~-~-~~~~~l~~~-~d~~i~~wd~~~~~----------  221 (308)
                      ++.|-.+++||.+.-..      +.++.       ..-.|+++ . .++.-|.++ .|-.|+++....+.          
T Consensus       300 gG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~  379 (559)
T KOG1334|consen  300 GGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPR  379 (559)
T ss_pred             CChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcch
Confidence            99999999999875321      22222       12235555 2 355544444 48899999543221          


Q ss_pred             --ee--eeeCCCC--CEEEEEEeC-C--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          222 --DL--SLSGPVG--QVYAMAVGN-D--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       222 --~~--~~~~~~~--~v~~~~~~~-~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                        ..  .+++|..  .|..+-|-. .  ++++|++=|.|.||+-.++    +.++.+++....|+| .=+|.-.+|++|+
T Consensus       380 ~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~----eii~~MegDr~VVNCLEpHP~~PvLAsSG  455 (559)
T KOG1334|consen  380 EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG----EIIRFMEGDRHVVNCLEPHPHLPVLASSG  455 (559)
T ss_pred             hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh----HHHHHhhcccceEeccCCCCCCchhhccC
Confidence              11  3677764  577787754 4  9999999999999999987    888888877778888 7788888888887


Q ss_pred             ---ceEEEEeecCc
Q 021744          292 ---SFIMFIGQNNK  302 (308)
Q Consensus       292 ---s~~i~~~~~~~  302 (308)
                         ++.||.....+
T Consensus       456 id~DVKIWTP~~~e  469 (559)
T KOG1334|consen  456 IDHDVKIWTPLTAE  469 (559)
T ss_pred             CccceeeecCCccc
Confidence               88888775444

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.52  E-value=2.4e-13  Score=117.36  Aligned_cols=179  Identities=14%  Similarity=0.096  Sum_probs=127.7

Q ss_pred             EEecCCCe---eeccCCCcEEEEECCC-CCCcccccc--eeeeeeeeeeeecCC--ceEEeeCCCeEEEEEcCCC-----
Q 021744           73 RFANNTWG---RNNNFNNHSNNYRAGN-SKNSNINNR--AVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDG-----  139 (308)
Q Consensus        73 ~~s~~g~~---~s~~~d~~i~vwd~~~-~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~~~-----  139 (308)
                      .|+.+...   -.++..|.|-|++++. |+..-....  .....+....|.|-.  +.+.+++||.|++|.+..+     
T Consensus       586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~  665 (1012)
T KOG1445|consen  586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN  665 (1012)
T ss_pred             ceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence            44444444   2456688999999953 333222222  222336677776654  5589999999999998644     


Q ss_pred             -ceeeeEeeCcccceEEEEEeCC-CCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEEc
Q 021744          140 -FKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNT  217 (308)
Q Consensus       140 -~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd~  217 (308)
                       ..+...+.+|...|+++.|+|- ...|+++++|-+|++||+.+.+...                               
T Consensus       666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~-------------------------------  714 (1012)
T KOG1445|consen  666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYS-------------------------------  714 (1012)
T ss_pred             cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhh-------------------------------
Confidence             1456678899999999999994 4678899999999998887654322                               


Q ss_pred             CCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCC--CeEEEEecCCCeEEEee
Q 021744          218 QTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTD--SNRAHFSRDVTSLLGSV  291 (308)
Q Consensus       218 ~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~v~~~~s~d~~~l~~s~  291 (308)
                            .+.+|.+.|..++|+|+  .+|+.+.||+|++|.-++..   +++++-.+..+  ..+..|.-||+++++++
T Consensus       715 ------~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e---~pv~Eg~gpvgtRgARi~wacdgr~viv~G  783 (1012)
T KOG1445|consen  715 ------RLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE---QPVYEGKGPVGTRGARILWACDGRIVIVVG  783 (1012)
T ss_pred             ------eeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC---CccccCCCCccCcceeEEEEecCcEEEEec
Confidence                  45689999999999999  89999999999999988763   55555443322  22337888888888665

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=1.3e-12  Score=115.11  Aligned_cols=203  Identities=10%  Similarity=0.046  Sum_probs=125.3

Q ss_pred             eeEEecCCCe-eeccCC---CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEc--CCCcee
Q 021744           71 AKRFANNTWG-RNNNFN---NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTV--GDGFKL  142 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~--~~~~~~  142 (308)
                      ..+|+|||+. +..+.+   ..|.+||+.+++..  .............|+|+|..  ++.+.++...||.+  .++  .
T Consensus       200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~--~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~--~  275 (427)
T PRK02889        200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR--VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS--G  275 (427)
T ss_pred             cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE--EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC--C
Confidence            5799999988 555432   35999999877542  11122233557889999965  34567777666654  444  2


Q ss_pred             eeEeeCcccceEEEEEeCCCCEEEEeeC-CCcEEEEeC--CCCeEEEEEeCCC--eeEEEEcCCCEEEEEc-CC---cEE
Q 021744          143 LTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDC--ASGQCAGVINLGG--EVGCMISEGPWIFIGV-TN---FVK  213 (308)
Q Consensus       143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~v~~wd~--~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~-d~---~i~  213 (308)
                      ...+..+........|+||++.|+..+. ++...+|.+  .+++.........  ....++++|++|+... ++   .|.
T Consensus       276 ~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~  355 (427)
T PRK02889        276 LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLY  355 (427)
T ss_pred             cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEE
Confidence            4555556666677899999998876554 466666654  4444322222221  1234578999988543 32   699


Q ss_pred             EEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEc-CCCe--EEEEEcCCCCcccccceeccccCCCeEE-EEecC
Q 021744          214 AWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT-QDGA--ILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRD  283 (308)
Q Consensus       214 ~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d  283 (308)
                      +||+.+++...+... .......|+|+  .|+..+ ..|.  +.+.++..     .....+..+.+.+.. +|+|-
T Consensus       356 v~d~~~g~~~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g-----~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        356 VQDLATGQVTALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG-----RIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EEECCCCCeEEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCC-----CceEEeecCCCCCCCCccCCC
Confidence            999998877655432 23467899999  444444 3433  55555533     334445555566666 78763

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.50  E-value=5.9e-12  Score=102.88  Aligned_cols=182  Identities=13%  Similarity=0.107  Sum_probs=137.7

Q ss_pred             CCCeeeccCCCcEEEEECCCCCCccccc--ceeeeeeeeeeeecCC-ce-EEeeCC--CeEEEEEcCCCceeeeEeeCc-
Q 021744           77 NTWGRNNNFNNHSNNYRAGNSKNSNINN--RAVIKTDILCRNWVQG-NC-MYGEKC--KFLHSWTVGDGFKLLTQLEGH-  149 (308)
Q Consensus        77 ~g~~~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~-~~g~~d--~~i~iwd~~~~~~~~~~~~~h-  149 (308)
                      +|..++|-.+|.+++|..+.+.......  ......+..+.-.+.. .+ ++|+..  ..+.+||++.. +++.+-+.- 
T Consensus       115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvp  193 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVP  193 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCC
Confidence            4444888999999999997554221111  1111223444444443 23 678988  89999999987 555443321 


Q ss_pred             --------ccceEEEEEeCC--CCEEEEeeCCCcEEEEeCCCC-eEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEE
Q 021744          150 --------QKVVSGITLPSG--SDKLYSGSKDETVRVWDCASG-QCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKA  214 (308)
Q Consensus       150 --------~~~v~~~~~~~~--~~~l~s~s~dg~v~~wd~~~~-~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~  214 (308)
                              +-.++++.|-+.  ...|++++.-+.|++||.+.+ +++..+. .+.++.++  .+.++++++|. .+.+..
T Consensus       194 nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~  273 (412)
T KOG3881|consen  194 NDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAK  273 (412)
T ss_pred             CccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhhe
Confidence                    234577888876  788999999999999999964 5777777 55666665  68999999887 889999


Q ss_pred             EEcCCCcee--eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744          215 WNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       215 wd~~~~~~~--~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~  259 (308)
                      ||++++...  .+.+..+.++++..+|.  ++++++.|+.|+|+|+.+.
T Consensus       274 FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  274 FDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             ecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence            999999988  58899999999999999  9999999999999999985

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=1.6e-12  Score=114.73  Aligned_cols=220  Identities=14%  Similarity=0.049  Sum_probs=133.0

Q ss_pred             cCCCCceeEEEeecCC---CCCCCCCCceEEecCC---CeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecC
Q 021744            4 DAHGGNKRVFHRLGGG---GGDGGGGGLSTADTRQ---KVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANN   77 (308)
Q Consensus         4 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~s~d---~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~   77 (308)
                      |.+|.|.+...+....   ..-+-.+..||..+.+   ..|++||..++.+.          ......+|.. .++|+||
T Consensus       190 d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~----------~l~~~~g~~~-~~~wSPD  258 (429)
T PRK01742        190 DYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK----------VVASFRGHNG-APAFSPD  258 (429)
T ss_pred             CCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE----------EEecCCCccC-ceeECCC
Confidence            4567776654432211   1112225667776543   47999998776110          0111223322 4799999


Q ss_pred             CCe-eec-cCCCcEEEE--ECCCCCCcccccceeeeeeeeeeeecCCce-EE-eeCCCeEEEEEcCCCceeeeEeeCccc
Q 021744           78 TWG-RNN-NFNNHSNNY--RAGNSKNSNINNRAVIKTDILCRNWVQGNC-MY-GEKCKFLHSWTVGDGFKLLTQLEGHQK  151 (308)
Q Consensus        78 g~~-~s~-~~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-g~~d~~i~iwd~~~~~~~~~~~~~h~~  151 (308)
                      |+. +.+ +.++.+.||  |+++++..  ....+...+....|+|+|.. ++ ...++...||++.........+ .+..
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~~~--~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~  335 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGTPS--QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG  335 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCCeE--eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC
Confidence            998 544 568877666  55444322  22223334667889999975 43 4457888888775431222223 3433


Q ss_pred             ceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEEEcCCCEEEEEc-CCcEEEEEc---CCCceeeee
Q 021744          152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCMISEGPWIFIGV-TNFVKAWNT---QTNTDLSLS  226 (308)
Q Consensus       152 ~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~~wd~---~~~~~~~~~  226 (308)
                        ....|+|++++|+..+.++ +.+||+.+++...... .......++|++++|+.++ ++.+.+|++   .......+.
T Consensus       336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~  412 (429)
T PRK01742        336 --YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP  412 (429)
T ss_pred             --CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence              4678999999998887765 5569999887553322 1222234678999888655 776666654   333344777


Q ss_pred             CCCCCEEEEEEeCC
Q 021744          227 GPVGQVYAMAVGND  240 (308)
Q Consensus       227 ~~~~~v~~~~~~~~  240 (308)
                      .|.+.+...+|+|-
T Consensus       413 ~~~g~~~~p~wsp~  426 (429)
T PRK01742        413 GSDGQVKFPAWSPY  426 (429)
T ss_pred             CCCCCCCCcccCCC
Confidence            88888888999873

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=4.7e-13  Score=113.69  Aligned_cols=124  Identities=12%  Similarity=0.074  Sum_probs=105.9

Q ss_pred             CCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC--c-eEEeeCCCeE
Q 021744           58 LPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG--N-CMYGEKCKFL  131 (308)
Q Consensus        58 ~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~g~~d~~i  131 (308)
                      ..+...+.||++.  ++.|+.+|.. ++|+.|-.+.|||.-..+.+.....+|...+.++.|-|..  . .++|..|..|
T Consensus        40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence            4445567899999  9999999999 9999999999999977777766778888899999998865  2 3889999999


Q ss_pred             EEEEcCCC---------ceeeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCC
Q 021744          132 HSWTVGDG---------FKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       132 ~iwd~~~~---------~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~  181 (308)
                      +++|+...         .+..+.+..|...|..++..|++ ..+.++++||+++-+|++.
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE  179 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE  179 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence            99999842         24556677899999999999988 7789999999999999985

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=5.1e-12  Score=111.80  Aligned_cols=201  Identities=9%  Similarity=0.022  Sum_probs=127.8

Q ss_pred             eeEEecCCCe-eeccC---CCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCC--eEEEEEcCCCcee
Q 021744           71 AKRFANNTWG-RNNNF---NNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCK--FLHSWTVGDGFKL  142 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~--~i~iwd~~~~~~~  142 (308)
                      ..+|+|||+. +..+.   +..|.+||+.+++..  ....+...+....|+|+|..  ++.+.++  .|++||+.++ + 
T Consensus       206 ~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~--~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~-~-  281 (435)
T PRK05137        206 TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE--LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG-T-  281 (435)
T ss_pred             eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC-c-
Confidence            6899999998 55442   467999999877542  22223334567789999965  3444554  4777888877 3 


Q ss_pred             eeEeeCcccceEEEEEeCCCCEEEEeeC-CC--cEEEEeCCCCeEEEEEeCCCee--EEEEcCCCEEEEEc--C--CcEE
Q 021744          143 LTQLEGHQKVVSGITLPSGSDKLYSGSK-DE--TVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIGV--T--NFVK  213 (308)
Q Consensus       143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg--~v~~wd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~--d--~~i~  213 (308)
                      ...+..+........|+||++.|+..+. ++  .|.++|+..++...........  ..++|+++.|+...  .  ..|.
T Consensus       282 ~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~  361 (435)
T PRK05137        282 TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIG  361 (435)
T ss_pred             eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEE
Confidence            3456666666778999999998877664 33  6888898776554333333222  23568999888543  2  3688


Q ss_pred             EEEcCCCceeeeeCCCCCEEEEEEeCC--EEEE-EcCC-----CeEEEEEcCCCCcccccceeccccCCCeEE-EEec
Q 021744          214 AWNTQTNTDLSLSGPVGQVYAMAVGND--LLFA-GTQD-----GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR  282 (308)
Q Consensus       214 ~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~-g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~  282 (308)
                      +||+.++....+.. ...+....|+||  .|+. ....     ..+.++|+..+.     ...+.. ...+.. +|+|
T Consensus       362 ~~d~~~~~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~-----~~~l~~-~~~~~~p~Wsp  432 (435)
T PRK05137        362 VMKPDGSGERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN-----EREVPT-PGDASDPAWSP  432 (435)
T ss_pred             EEECCCCceEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc-----eEEccC-CCCccCcccCC
Confidence            99987665543332 234678899999  4443 3322     357888887642     233332 334555 7765

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.46  E-value=4.1e-12  Score=103.77  Aligned_cols=207  Identities=11%  Similarity=0.066  Sum_probs=149.0

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe--eeccCC--CcEEEEECCCCCCc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG--RNNNFN--NHSNNYRAGNSKNS  100 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~--~s~~~d--~~i~vwd~~~~~~~  100 (308)
                      +..|++|-.+|.+.+|....+      .+|. .++.. +..+.+. .+.-+|.-.+  |+|+..  +.++|||++..+++
T Consensus       115 dg~Litc~~sG~l~~~~~k~~------d~hs-s~l~~-la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi  186 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSG------DLHS-SKLIK-LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI  186 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCC------cccc-cccee-eecCCceeeeccCCCCCceEecCchhcccceeeeecccceee
Confidence            568899999999999987755      2221 11111 1222222 4556666555  779988  88999999876544


Q ss_pred             cccccee------eee--eeeeeeecC--C-ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEee
Q 021744          101 NINNRAV------IKT--DILCRNWVQ--G-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS  169 (308)
Q Consensus       101 ~~~~~~~------~~~--~~~~~~~~~--~-~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s  169 (308)
                      -......      .-+  +..+.|.+.  . .++++..-+.+++||.+..++++..+.-.+.+++++...|+++.+++|.
T Consensus       187 w~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn  266 (412)
T KOG3881|consen  187 WSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN  266 (412)
T ss_pred             eeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec
Confidence            3222111      112  344556555  2 4489999999999999988788989888899999999999999999999


Q ss_pred             CCCcEEEEeCCCCeEEEE-Ee-CCCeeEEEE--cCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC
Q 021744          170 KDETVRVWDCASGQCAGV-IN-LGGEVGCMI--SEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND  240 (308)
Q Consensus       170 ~dg~v~~wd~~~~~~~~~-~~-~~~~v~~~~--~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~  240 (308)
                      .-+.+..+|++.++.... ++ ..+.++.+.  +..+++++++ |..++|+|+.+.+++.-..-...++++.+.++
T Consensus       267 ~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  267 TKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             ccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence            999999999999988877 54 566677763  5567888777 99999999999766622223445677777554

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=1.3e-10  Score=104.04  Aligned_cols=269  Identities=10%  Similarity=0.046  Sum_probs=173.5

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCC---e-eeccCCCcEEEEECCCCCC
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTW---G-RNNNFNNHSNNYRAGNSKN   99 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~---~-~s~~~d~~i~vwd~~~~~~   99 (308)
                      .....-+..+..|.|+...++            .....+.+|..+  .+.+.|...   + .+++.||+|++||...+..
T Consensus        27 D~k~l~~~~~~~V~VyS~~Tg------------~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L   94 (792)
T KOG1963|consen   27 DAKFLFLCTGNFVKVYSTATG------------ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL   94 (792)
T ss_pred             CCcEEEEeeCCEEEEEecchH------------hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE
Confidence            345555666789999998887            122255667666  566665544   4 7999999999999976653


Q ss_pred             cccccceeeee---------------------------------------------------------eeeeeeecCCce
Q 021744          100 SNINNRAVIKT---------------------------------------------------------DILCRNWVQGNC  122 (308)
Q Consensus       100 ~~~~~~~~~~~---------------------------------------------------------~~~~~~~~~~~~  122 (308)
                      +..........                                                         ..++.+.+.+..
T Consensus        95 lkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~  174 (792)
T KOG1963|consen   95 LKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF  174 (792)
T ss_pred             EEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence            22111000000                                                         112222333333


Q ss_pred             EEeeCCCeEEEEEcCCCceeee---EeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC--C--eEEEEEe-CCCee
Q 021744          123 MYGEKCKFLHSWTVGDGFKLLT---QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS--G--QCAGVIN-LGGEV  194 (308)
Q Consensus       123 ~~g~~d~~i~iwd~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~--~--~~~~~~~-~~~~v  194 (308)
                      .....+..+.+|......+...   .-..|.-.+++.+++|.+++++++..||.|.+|.--.  .  .....+. |..++
T Consensus       175 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V  254 (792)
T KOG1963|consen  175 KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEV  254 (792)
T ss_pred             EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccc
Confidence            3333455667787776421111   1124777789999999999999999999999995332  1  2223344 77778


Q ss_pred             EEE--EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceec
Q 021744          195 GCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASL  269 (308)
Q Consensus       195 ~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~  269 (308)
                      .++  +++|.+|++|+ .+.+.+|.+.+++.+-+..-.++|..+.++||  +.+...+|+.|.+....+... ...+..+
T Consensus       255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~-k~tIsgi  333 (792)
T KOG1963|consen  255 NSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI-KSTISGI  333 (792)
T ss_pred             ceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh-hhhccCc
Confidence            776  68999999988 99999999999997777777889999999999  778888899999998755311 0112222


Q ss_pred             cc--------cCCCeEE-EEec-CCCeEEE--eeceEEEEeecCceeEEe
Q 021744          270 KV--------HTDSNRA-HFSR-DVTSLLG--SVSFIMFIGQNNKGVVCY  307 (308)
Q Consensus       270 ~~--------~~~~v~~-~~s~-d~~~l~~--s~s~~i~~~~~~~~~~~~  307 (308)
                      ..        .....+. +++| .+..++-  .+.+.+|...++..+.-|
T Consensus       334 ~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~  383 (792)
T KOG1963|consen  334 KPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKL  383 (792)
T ss_pred             cCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeE
Confidence            21        1333444 7777 3333332  236777777777776544

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.46  E-value=1.1e-11  Score=109.78  Aligned_cols=228  Identities=11%  Similarity=0.004  Sum_probs=150.1

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEe--cCCCe-eeccCCCcEEEEECCCCCC
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFA--NNTWG-RNNNFNNHSNNYRAGNSKN   99 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s--~~g~~-~s~~~d~~i~vwd~~~~~~   99 (308)
                      ...++|.|+.+|.|-+||...+.+-+      ..+.......|..+  .+.|.  +.+.- ++++.||.|..|+++.-..
T Consensus       254 ~p~ll~gG~y~GqV~lWD~~~~~~~~------~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~  327 (555)
T KOG1587|consen  254 DPNLLAGGCYNGQVVLWDLRKGSDTP------PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSL  327 (555)
T ss_pred             CcceEEeeccCceEEEEEccCCCCCC------CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeecccccc
Confidence            35789999999999999988762211      12222333456555  44443  33322 9999999999998853221


Q ss_pred             cc-c---cccee-------eeeeeeeeeecCC--ceEEeeCCCeEEEEEcC---CCc----eeeeEeeCcccceEEEEEe
Q 021744          100 SN-I---NNRAV-------IKTDILCRNWVQG--NCMYGEKCKFLHSWTVG---DGF----KLLTQLEGHQKVVSGITLP  159 (308)
Q Consensus       100 ~~-~---~~~~~-------~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~---~~~----~~~~~~~~h~~~v~~~~~~  159 (308)
                      .. .   ....+       ...+..+.|.+..  .++.|+++|.|..-.-.   ...    +....+..|.++|+++.++
T Consensus       328 P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~n  407 (555)
T KOG1587|consen  328 PVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRN  407 (555)
T ss_pred             chhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecC
Confidence            10 0   11111       1126677777765  45999999999873332   221    2233555688999999999


Q ss_pred             CCCCEEEEeeCCCcEEEEeCC-CCeEEEEEe-CCCeeEEE-EcCCC--EEEEEc-CCcEEEEEcCCCcee---eeeCCCC
Q 021744          160 SGSDKLYSGSKDETVRVWDCA-SGQCAGVIN-LGGEVGCM-ISEGP--WIFIGV-TNFVKAWNTQTNTDL---SLSGPVG  230 (308)
Q Consensus       160 ~~~~~l~s~s~dg~v~~wd~~-~~~~~~~~~-~~~~v~~~-~~~~~--~l~~~~-d~~i~~wd~~~~~~~---~~~~~~~  230 (308)
                      |=...++..+.|-+|+||... ...++..+. ....+.++ |+..+  .++++. +|.|.+||+......   +...+..
T Consensus       408 PF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~  487 (555)
T KOG1587|consen  408 PFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSP  487 (555)
T ss_pred             CCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccccc
Confidence            976555444449999999987 566666665 44546655 44433  445555 999999999865432   4444455


Q ss_pred             CEEEEEEeCC--EEEEEcCCCeEEEEEcCC
Q 021744          231 QVYAMAVGND--LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       231 ~v~~~~~~~~--~l~~g~~dg~i~iwd~~~  258 (308)
                      ..+.+.+++.  .+++|...|.+.+|++..
T Consensus       488 ~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  488 ALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             ccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            6677778885  899999999999999964

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=3.7e-12  Score=104.25  Aligned_cols=185  Identities=14%  Similarity=0.136  Sum_probs=139.0

Q ss_pred             ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCc-----eeeeEee-CcccceEEEEEeCCCCEEEEeeCCCcEE
Q 021744          103 NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGF-----KLLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVR  175 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~-----~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~v~  175 (308)
                      ....|.+.+..+.|+..+.. ++|+.|..+++|++....     +++.... .|...|.|++|+....++++|..+++|.
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI  130 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI  130 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence            34677788999999999977 899999999999986321     3444333 3568999999999899999999999999


Q ss_pred             EEeCCCCeEEEEEeCCC---eeEEE--EcCCCEEEEEc-CCcEEEEEcCCCce-e---eeeCCCCCEEEEEEeCC---EE
Q 021744          176 VWDCASGQCAGVINLGG---EVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTD-L---SLSGPVGQVYAMAVGND---LL  242 (308)
Q Consensus       176 ~wd~~~~~~~~~~~~~~---~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~-~---~~~~~~~~v~~~~~~~~---~l  242 (308)
                      +.|+++.+.+..+.++.   .+..+  .|-.+.+++.+ ++.|.+||.+..+. .   -+........++.|+|.   +|
T Consensus       131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li  210 (609)
T KOG4227|consen  131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI  210 (609)
T ss_pred             eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence            99999999999998665   44444  45566666554 99999999987662 2   23344557888999998   89


Q ss_pred             EEEcCCCeEEEEEcCCCCcccccceecc------c-cCCCeEEEEecCCCeEEEe
Q 021744          243 FAGTQDGAILAWKFNVTTNCFEPAASLK------V-HTDSNRAHFSRDVTSLLGS  290 (308)
Q Consensus       243 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~------~-~~~~v~~~~s~d~~~l~~s  290 (308)
                      ++.+..+-+.+||.+.+.   .++....      . ...+....|+|.|..+++-
T Consensus       211 ~~~~~~~G~~~~D~R~~~---~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi  262 (609)
T KOG4227|consen  211 LVNSETGGPNVFDRRMQA---RPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI  262 (609)
T ss_pred             EeccccCCCCceeecccc---chHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence            999999999999998764   2332221      1 1223334899998877643

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=4.5e-11  Score=105.67  Aligned_cols=207  Identities=11%  Similarity=0.021  Sum_probs=131.4

Q ss_pred             CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEee---CCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCC
Q 021744           87 NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGE---KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS  162 (308)
Q Consensus        87 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~---~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~  162 (308)
                      .+|.+||.......  ....+...+....|+|++.. ++.+   ....|++||+.++. . ..+....+.....+|+|++
T Consensus       184 ~~l~i~D~~g~~~~--~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~-~-~~l~~~~g~~~~~~~SpDG  259 (433)
T PRK04922        184 YALQVADSDGYNPQ--TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ-R-ELVASFRGINGAPSFSPDG  259 (433)
T ss_pred             EEEEEECCCCCCce--EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC-E-EEeccCCCCccCceECCCC
Confidence            46899998644322  22233445778899999965 5444   23579999998773 2 2333344555688999999


Q ss_pred             CEEE-EeeCCC--cEEEEeCCCCeEEEEEeCCCee--EEEEcCCCEEEEEc--CC--cEEEEEcCCCceeeeeCCCCCEE
Q 021744          163 DKLY-SGSKDE--TVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIGV--TN--FVKAWNTQTNTDLSLSGPVGQVY  233 (308)
Q Consensus       163 ~~l~-s~s~dg--~v~~wd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~--d~--~i~~wd~~~~~~~~~~~~~~~v~  233 (308)
                      +.|+ +.+.++  .|++||+.+++......+....  .+++++++.|+..+  ++  .|.++|+.+++...+..+.....
T Consensus       260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~  339 (433)
T PRK04922        260 RRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNA  339 (433)
T ss_pred             CEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCcc
Confidence            8774 556665  5999999988754433332222  34568899887554  33  47778888877664443334455


Q ss_pred             EEEEeCC--EEEEEcCC-C--eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee----ceEEEEeecCce
Q 021744          234 AMAVGND--LLFAGTQD-G--AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV----SFIMFIGQNNKG  303 (308)
Q Consensus       234 ~~~~~~~--~l~~g~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~----s~~i~~~~~~~~  303 (308)
                      ..+|+|+  +++..+.+ +  .|.+||+.++.    . ..+. +...... .|+|||++++.+.    ...||....+.+
T Consensus       340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~----~-~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS----V-RTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             CEEECCCCCEEEEEECCCCceeEEEEECCCCC----e-EECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            7899999  55554333 2  69999998753    2 2333 2223345 9999999887444    346777665443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.43  E-value=7.2e-11  Score=101.33  Aligned_cols=250  Identities=8%  Similarity=-0.018  Sum_probs=148.0

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe--eeccCCCcEEEEECCCCCCcccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      +.++..++.|+.|.++|..+.           +.......|.....+++++||++  ++...++++.++|.++.+.+...
T Consensus        48 gr~~yv~~rdg~vsviD~~~~-----------~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I  116 (369)
T PF02239_consen   48 GRYLYVANRDGTVSVIDLATG-----------KVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTI  116 (369)
T ss_dssp             SSEEEEEETTSEEEEEETTSS-----------SEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCcc-----------cEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeec
Confidence            667777789999999999887           22222122222227999999999  45557899999999887765432


Q ss_pred             cce------eeeeeeeeeeecCCc-eEEeeC-CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEE-eeCCCcE
Q 021744          104 NRA------VIKTDILCRNWVQGN-CMYGEK-CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYS-GSKDETV  174 (308)
Q Consensus       104 ~~~------~~~~~~~~~~~~~~~-~~~g~~-d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~s~dg~v  174 (308)
                      ...      ....+..+..++... .+..-. .+.|-+.|..+..........-........|+|++++++. ...+..|
T Consensus       117 ~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i  196 (369)
T PF02239_consen  117 PTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKI  196 (369)
T ss_dssp             E--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred             ccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccccee
Confidence            211      112244555566665 455444 4788888877653333233334556778999999998755 4567799


Q ss_pred             EEEeCCCCeEEEEEe-----CCCeeEEEE-----------cCCCEEE-EEcCCcEEEEEcCCCcee-eeeCCCCCEEEEE
Q 021744          175 RVWDCASGQCAGVIN-----LGGEVGCMI-----------SEGPWIF-IGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMA  236 (308)
Q Consensus       175 ~~wd~~~~~~~~~~~-----~~~~v~~~~-----------~~~~~l~-~~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~  236 (308)
                      -++|.++++.+..+.     ++.+...+-           ..+...+ .-....+.+||....+.. ++...... .-+.
T Consensus       197 ~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~  275 (369)
T PF02239_consen  197 AVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIK  275 (369)
T ss_dssp             EEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE
T ss_pred             EEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceee
Confidence            999999998887765     222233221           1222222 122345556787777776 56655555 6788


Q ss_pred             EeCC--EEEEE----cCCCeEEEEEcCCCCcccccceeccccCC-CeEE-EEecCCCeEEEee
Q 021744          237 VGND--LLFAG----TQDGAILAWKFNVTTNCFEPAASLKVHTD-SNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       237 ~~~~--~l~~g----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~-~~s~d~~~l~~s~  291 (308)
                      .+|+  ++.+.    ...+.|.++|.++.    +.+.++..... .+.. .|++||+.+..|.
T Consensus       276 thP~s~~vwvd~~~~~~~~~v~viD~~tl----~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~  334 (369)
T PF02239_consen  276 THPDSRYVWVDTFLNPDADTVQVIDKKTL----KVVKTITPGPGKRVVHMEFNPDGKEVWVSV  334 (369)
T ss_dssp             --TT-SEEEEE-TT-SSHT-EEEEECCGT----EEEE-HHHHHT--EEEEEE-TTSSEEEEEE
T ss_pred             cCCCCccEEeeccCCCCCceEEEEECcCc----ceeEEEeccCCCcEeccEECCCCCEEEEEE
Confidence            8999  66666    55689999999986    55666653333 3555 9999999988765

...

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=8.4e-11  Score=104.08  Aligned_cols=207  Identities=9%  Similarity=-0.062  Sum_probs=134.7

Q ss_pred             CCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEee---CCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCC
Q 021744           86 NNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGE---KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG  161 (308)
Q Consensus        86 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~---~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~  161 (308)
                      ...|.+||.+.....  ....+...+....|+|+|.. ++.+   .+..|++||+.++. . ..+..+.+.+...+|+||
T Consensus       181 ~~~l~~~d~dg~~~~--~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-~-~~l~~~~g~~~~~~~SPD  256 (435)
T PRK05137        181 IKRLAIMDQDGANVR--YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ-R-ELVGNFPGMTFAPRFSPD  256 (435)
T ss_pred             ceEEEEECCCCCCcE--EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc-E-EEeecCCCcccCcEECCC
Confidence            347888888544322  22334445888999999965 4433   35789999998873 3 345556677888999999


Q ss_pred             CCEEE-EeeCCCc--EEEEeCCCCeEEEEEeCCCee--EEEEcCCCEEEEEc--CC--cEEEEEcCCCceeeeeCCCCCE
Q 021744          162 SDKLY-SGSKDET--VRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIGV--TN--FVKAWNTQTNTDLSLSGPVGQV  232 (308)
Q Consensus       162 ~~~l~-s~s~dg~--v~~wd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~--d~--~i~~wd~~~~~~~~~~~~~~~v  232 (308)
                      ++.|+ +.+.++.  |.+||+.+++......+....  ..++++++.|+..+  ++  .|+++|+.+++...+..+...+
T Consensus       257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~  336 (435)
T PRK05137        257 GRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRY  336 (435)
T ss_pred             CCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcc
Confidence            98764 6666665  777799887664433333322  34568899887544  33  7889999887776655555567


Q ss_pred             EEEEEeCC--EEEEEcCC---CeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeec-------eEEEEee
Q 021744          233 YAMAVGND--LLFAGTQD---GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVS-------FIMFIGQ  299 (308)
Q Consensus       233 ~~~~~~~~--~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s-------~~i~~~~  299 (308)
                      ....|+|+  .|+..+.+   ..|.+||+..+.     ...+.. ...+.. .|+|||+.|+....       ..||...
T Consensus       337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-----~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d  410 (435)
T PRK05137        337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-----ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD  410 (435)
T ss_pred             cCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-----eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence            77889999  55554432   368888876542     222221 223556 99999999874431       3677766


Q ss_pred             cCc
Q 021744          300 NNK  302 (308)
Q Consensus       300 ~~~  302 (308)
                      .+.
T Consensus       411 l~g  413 (435)
T PRK05137        411 LTG  413 (435)
T ss_pred             CCC
Confidence            443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=4.7e-11  Score=105.22  Aligned_cols=220  Identities=11%  Similarity=0.032  Sum_probs=134.1

Q ss_pred             cCCCCceeEEEeec----CCCCCCCCCCceEEec---CCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEec
Q 021744            4 DAHGGNKRVFHRLG----GGGGDGGGGGLSTADT---RQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFAN   76 (308)
Q Consensus         4 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~s---~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~   76 (308)
                      |.+|.|.|...+..    .+.-..+ |..||..+   .+..|++|+...+..   .      .. ....++.. ..+|+|
T Consensus       185 d~dg~~~~~lt~~~~~~~~p~wSPD-G~~la~~s~~~g~~~i~i~dl~~G~~---~------~l-~~~~~~~~-~~~~SP  252 (429)
T PRK03629        185 DYDGYNQFVVHRSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTLANGAV---R------QV-ASFPRHNG-APAFSP  252 (429)
T ss_pred             cCCCCCCEEeecCCCceeeeEEcCC-CCEEEEEEecCCCcEEEEEECCCCCe---E------Ec-cCCCCCcC-CeEECC
Confidence            45688877765533    1222222 45555443   345789999876611   0      00 11122222 479999


Q ss_pred             CCCe-e-eccCCC--cEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeC-CC--eEEEEEcCCCceeeeEeeC
Q 021744           77 NTWG-R-NNNFNN--HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEK-CK--FLHSWTVGDGFKLLTQLEG  148 (308)
Q Consensus        77 ~g~~-~-s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~-d~--~i~iwd~~~~~~~~~~~~~  148 (308)
                      ||+. + +.+.++  .|.+||+++++..  ........+....|+|+|.. ++.+. ++  .|+++++.++ + ...+..
T Consensus       253 DG~~La~~~~~~g~~~I~~~d~~tg~~~--~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g-~-~~~lt~  328 (429)
T PRK03629        253 DGSKLAFALSKTGSLNLYVMDLASGQIR--QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG-A-PQRITW  328 (429)
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCCCCEE--EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC-C-eEEeec
Confidence            9998 4 444454  4888999776533  11122234567889999975 44443 34  4555566665 2 234443


Q ss_pred             cccceEEEEEeCCCCEEEEeeCC---CcEEEEeCCCCeEEEEEeC-CCeeEEEEcCCCEEEEEc-CC---cEEEEEcCCC
Q 021744          149 HQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCASGQCAGVINL-GGEVGCMISEGPWIFIGV-TN---FVKAWNTQTN  220 (308)
Q Consensus       149 h~~~v~~~~~~~~~~~l~s~s~d---g~v~~wd~~~~~~~~~~~~-~~~v~~~~~~~~~l~~~~-d~---~i~~wd~~~~  220 (308)
                      +........|+||+++++..+.+   ..|.+||+.+++....... ......++++++.|+.++ ++   .+.++++...
T Consensus       329 ~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~  408 (429)
T PRK03629        329 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR  408 (429)
T ss_pred             CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence            44456678999999998776543   3588899988764432221 122234678999888554 44   4788888766


Q ss_pred             ceeeeeCCCCCEEEEEEeC
Q 021744          221 TDLSLSGPVGQVYAMAVGN  239 (308)
Q Consensus       221 ~~~~~~~~~~~v~~~~~~~  239 (308)
                      ....+..|...+...+|+|
T Consensus       409 ~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        409 FKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CeEECccCCCCcCCcccCC
Confidence            6667778888888888887

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.42  E-value=6.6e-10  Score=96.73  Aligned_cols=253  Identities=15%  Similarity=0.090  Sum_probs=147.8

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN  104 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~  104 (308)
                      +..++.++.++.+..+|..+++.     +.+ ........    ....+  .+.. +.+..++.|..||.++++..-...
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~-----~W~-~~~~~~~~----~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  172 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKE-----LWR-AKLSSEVL----SPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYS  172 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcE-----eee-eccCceee----cCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEc
Confidence            55677777888888888877621     000 00000000    00111  2334 667778999999998886542211


Q ss_pred             ceeee---eeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCc-cc------c---e-EEEEEeCCCCEEEEeeC
Q 021744          105 RAVIK---TDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGH-QK------V---V-SGITLPSGSDKLYSGSK  170 (308)
Q Consensus       105 ~~~~~---~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h-~~------~---v-~~~~~~~~~~~l~s~s~  170 (308)
                      .....   .........++..+.+..++.+..+|++++ +.+.+.... ..      .   + ....+  .+..++.++.
T Consensus       173 ~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG-~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~  249 (377)
T TIGR03300       173 RVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTG-QPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSY  249 (377)
T ss_pred             cCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCC-CEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEc
Confidence            11000   000001112345577788899999999988 444433211 00      0   0 11112  2457888889


Q ss_pred             CCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEE-EcCCcEEEEEcCCCcee-eeeCC-CCCEEEEEEeCCEEEEEcC
Q 021744          171 DETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFI-GVTNFVKAWNTQTNTDL-SLSGP-VGQVYAMAVGNDLLFAGTQ  247 (308)
Q Consensus       171 dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~d~~i~~wd~~~~~~~-~~~~~-~~~v~~~~~~~~~l~~g~~  247 (308)
                      +|.+..+|.++++.+........ ......+..+++ ..++.+..+|..+++.+ ..... .....+..+..+.+++++.
T Consensus       250 ~g~l~a~d~~tG~~~W~~~~~~~-~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~  328 (377)
T TIGR03300       250 QGRVAALDLRSGRVLWKRDASSY-QGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDF  328 (377)
T ss_pred             CCEEEEEECCCCcEEEeeccCCc-cCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeC
Confidence            99999999999998877663322 122233455554 45899999999999877 33221 1223333444558888999


Q ss_pred             CCeEEEEEcCCCCcccccceeccccCCCeEE--EEecCCCeEEEeeceEEEEeecCceeEEeC
Q 021744          248 DGAILAWKFNVTTNCFEPAASLKVHTDSNRA--HFSRDVTSLLGSVSFIMFIGQNNKGVVCYR  308 (308)
Q Consensus       248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~--~~s~d~~~l~~s~s~~i~~~~~~~~~~~~~  308 (308)
                      +|.|+++|..++    +.+..++.+...+..  .+. ++         .||+...+..++|||
T Consensus       329 ~G~l~~~d~~tG----~~~~~~~~~~~~~~~sp~~~-~~---------~l~v~~~dG~l~~~~  377 (377)
T TIGR03300       329 EGYLHWLSREDG----SFVARLKTDGSGIASPPVVV-GD---------GLLVQTRDGDLYAFR  377 (377)
T ss_pred             CCEEEEEECCCC----CEEEEEEcCCCccccCCEEE-CC---------EEEEEeCCceEEEeC
Confidence            999999999887    666666655544333  322 22         466666677778876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.40  E-value=4.1e-11  Score=101.82  Aligned_cols=184  Identities=13%  Similarity=0.107  Sum_probs=132.2

Q ss_pred             cCCCe-eeccCCCcEEEEECCCCCC---cccccceeeeeeeeeeeecCC--ceEEeeCCCeEEEEEcCCC----------
Q 021744           76 NNTWG-RNNNFNNHSNNYRAGNSKN---SNINNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDG----------  139 (308)
Q Consensus        76 ~~g~~-~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~~~----------  139 (308)
                      |.+-. ..|-.-|.|.+.|....+.   ........+..+.++.|-+.+  .++.+-.+|.+++||..-.          
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            44444 7777778888887743211   111112233447888887766  3367778899999975311          


Q ss_pred             ----c-------------eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe--CCCee-EEEEc
Q 021744          140 ----F-------------KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN--LGGEV-GCMIS  199 (308)
Q Consensus       140 ----~-------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~--~~~~v-~~~~~  199 (308)
                          .             .++..+.-.++.|...+|+||+++||+.+.||.++|+|..+.+.+...+  ..+-. .|++|
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP  342 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP  342 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence                0             0111111234578899999999999999999999999999887776666  33333 34469


Q ss_pred             CCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeC--------------------------------------
Q 021744          200 EGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGN--------------------------------------  239 (308)
Q Consensus       200 ~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~--------------------------------------  239 (308)
                      |+++|++|. |.-|.||.+...+.+ .=.+|.++|..++|.|                                      
T Consensus       343 DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~  422 (636)
T KOG2394|consen  343 DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGC  422 (636)
T ss_pred             CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCC
Confidence            999999988 889999999988888 6789999999999983                                      


Q ss_pred             ----------C--EEEEEcCCCeEEEEEcCCC
Q 021744          240 ----------D--LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       240 ----------~--~l~~g~~dg~i~iwd~~~~  259 (308)
                                .  .|.+.+.|-.+.+||+...
T Consensus       423 ~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD  454 (636)
T KOG2394|consen  423 PLSSFNRINSVTYRFGSVGQDTQLCLWDLTED  454 (636)
T ss_pred             cccccccccceEEEeecccccceEEEEecchh
Confidence                      1  5778889999999998763

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=6.2e-11  Score=104.95  Aligned_cols=202  Identities=13%  Similarity=0.088  Sum_probs=123.4

Q ss_pred             eeEEecCCCe-eeccCC---CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-E-EeeCCC--eEEEEEcCCCcee
Q 021744           71 AKRFANNTWG-RNNNFN---NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-M-YGEKCK--FLHSWTVGDGFKL  142 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~d~--~i~iwd~~~~~~~  142 (308)
                      ...|+|||+. +..+.+   ..|.+||+.+++...  ............|+|+|.. + +...++  .|++||+.++ + 
T Consensus       203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~-~-  278 (430)
T PRK00178        203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR-Q-  278 (430)
T ss_pred             eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC-C-
Confidence            5799999998 544433   358889998764321  1112223445789999965 3 344444  6888899887 3 


Q ss_pred             eeEeeCcccceEEEEEeCCCCEEEEeeC-CC--cEEEEeCCCCeEEEEEeCCC--eeEEEEcCCCEEEEEc--CC--cEE
Q 021744          143 LTQLEGHQKVVSGITLPSGSDKLYSGSK-DE--TVRVWDCASGQCAGVINLGG--EVGCMISEGPWIFIGV--TN--FVK  213 (308)
Q Consensus       143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg--~v~~wd~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~--d~--~i~  213 (308)
                      ...+..+........|+||++.++..+. ++  .|.++|+.+++.........  ....++++++.++...  ++  .|.
T Consensus       279 ~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~  358 (430)
T PRK00178        279 LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVA  358 (430)
T ss_pred             eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEE
Confidence            3345556666777899999988766554 33  57778888776443322211  1234568899887543  33  688


Q ss_pred             EEEcCCCceeeeeCCCCCEEEEEEeCC--EE-EEEcCCC--eEEEEEcCCCCcccccceeccccCCCeEE-EEec
Q 021744          214 AWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGTQDG--AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR  282 (308)
Q Consensus       214 ~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l-~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~  282 (308)
                      +||+.+++...+... .......|+|+  .+ ++...++  .+.++++...     ....+..+...+.. +|+|
T Consensus       359 ~~dl~tg~~~~lt~~-~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-----~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        359 AQDLQRGSVRILTDT-SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-----VRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             EEECCCCCEEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-----ceEECcCCCCCcCCCccCC
Confidence            999998876644322 22235689998  44 4443333  4666676542     23344444445555 7765

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=7.9e-11  Score=104.25  Aligned_cols=202  Identities=12%  Similarity=0.074  Sum_probs=122.5

Q ss_pred             eeEEecCCCe-eeccC-CC--cEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCe--EEEEEcCCCcee
Q 021744           71 AKRFANNTWG-RNNNF-NN--HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKF--LHSWTVGDGFKL  142 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~--i~iwd~~~~~~~  142 (308)
                      ...|+|||+. +..+. ++  .|.+||+.+++...  ............|+|+|..  ++...++.  |+++|+.++ + 
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg-~-  297 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK-A-  297 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC-C-
Confidence            4699999998 54433 33  58888987765321  1111222345789999975  33455664  778888876 3 


Q ss_pred             eeEeeCcccceEEEEEeCCCCEEEEeeC-CC--cEEEEeCCCCeEEEEEeCCC--eeEEEEcCCCEEEEEc--CC--cEE
Q 021744          143 LTQLEGHQKVVSGITLPSGSDKLYSGSK-DE--TVRVWDCASGQCAGVINLGG--EVGCMISEGPWIFIGV--TN--FVK  213 (308)
Q Consensus       143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg--~v~~wd~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~--d~--~i~  213 (308)
                      ...+..+.......+|+||++.++..+. ++  .|.++|+.+++.........  ....+++++++|+...  ++  .|.
T Consensus       298 ~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~  377 (448)
T PRK04792        298 LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIA  377 (448)
T ss_pred             eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEE
Confidence            3445555566778899999998765553 34  46667887776543322111  1235578998887543  33  567


Q ss_pred             EEEcCCCceeeeeCCCCCEEEEEEeCC--E-EEEEcCCCe--EEEEEcCCCCcccccceeccccCCCeEE-EEec
Q 021744          214 AWNTQTNTDLSLSGPVGQVYAMAVGND--L-LFAGTQDGA--ILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR  282 (308)
Q Consensus       214 ~wd~~~~~~~~~~~~~~~v~~~~~~~~--~-l~~g~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~  282 (308)
                      ++|+.+++...+.... ......|+|+  . +++...++.  +++++...     .....+..+...+.. +|+|
T Consensus       378 ~~dl~~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G-----~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        378 RQDLETGAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG-----RFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             EEECCCCCeEEccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEECCC-----CceEECcCCCCCcCCCccCC
Confidence            7898888766443321 2234579998  4 444444444  66777643     344455555555666 7776

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.37  E-value=1.6e-10  Score=92.44  Aligned_cols=218  Identities=10%  Similarity=-0.004  Sum_probs=159.3

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCC--cccccceeeeeeeeeeeecCC-ceEEeeCCCeEEEEEcCCCc--eeee
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKN--SNINNRAVIKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGF--KLLT  144 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~iwd~~~~~--~~~~  144 (308)
                      +.+|++|+.. |.+-..+.|.||.....+.  ....+..|...+..+.+.|.. ++++++.|..-++|....+.  ++.-
T Consensus        15 chAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptl   94 (361)
T KOG1523|consen   15 CHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTL   94 (361)
T ss_pred             eeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccce
Confidence            6799999999 9999999999999876652  222445677778899999988 55999999999999984332  3334


Q ss_pred             EeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-----CCCeeEEE--EcCCCEEEEEc-CCcEEEEE
Q 021744          145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-----LGGEVGCM--ISEGPWIFIGV-TNFVKAWN  216 (308)
Q Consensus       145 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-----~~~~v~~~--~~~~~~l~~~~-d~~i~~wd  216 (308)
                      .+..+....+++.|+|.++.+++||.-..|.+|-++...--..-+     ....+.++  .+++-+|++|+ |+..++|.
T Consensus        95 vLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfS  174 (361)
T KOG1523|consen   95 VLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFS  174 (361)
T ss_pred             eEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEE
Confidence            455688999999999999999999999999999887655443322     44556666  36777888887 99888885


Q ss_pred             cC-----CC-------------cee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCC
Q 021744          217 TQ-----TN-------------TDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDS  275 (308)
Q Consensus       217 ~~-----~~-------------~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  275 (308)
                      .-     ..             +++ .+....+.+..+.|+|+  .|+-.+.|..+.+-|...+.   +.+.......-+
T Consensus       175 ayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~---~~v~~~~~~~lP  251 (361)
T KOG1523|consen  175 AYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS---ERVQSVATAQLP  251 (361)
T ss_pred             EeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc---hhccchhhccCC
Confidence            32     11             122 23345678999999998  89999999999999988763   233444333355


Q ss_pred             eEE-EEecCCCeEEEee
Q 021744          276 NRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       276 v~~-~~s~d~~~l~~s~  291 (308)
                      ..+ .|-.+...+.+..
T Consensus       252 ~ls~~~ise~~vv~ag~  268 (361)
T KOG1523|consen  252 LLSVSWISENSVVAAGY  268 (361)
T ss_pred             ceeeEeecCCceeecCC
Confidence            555 7766665555443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.35  E-value=8.4e-12  Score=104.14  Aligned_cols=230  Identities=12%  Similarity=0.085  Sum_probs=163.1

Q ss_pred             CCCCCceEEecCCCeEEEeecCCCCC----------CCCCcccccCCCC-----------------CCccccccc-eeEE
Q 021744           23 GGGGGLSTADTRQKVCNYWRAGKCNR----------FPCPYLHRELPLP-----------------PAATANGAA-AKRF   74 (308)
Q Consensus        23 ~~~~~~~~s~s~d~~i~~W~~~~~~~----------~~~~~~~~~~~~~-----------------~~~~gh~~~-~i~~   74 (308)
                      +..|..++-++..|.+-.+|..+.+.          ....|||.++-..                 ..+..|... .+.|
T Consensus       138 trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v~rLeF  217 (545)
T KOG1272|consen  138 TRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRVARLEF  217 (545)
T ss_pred             cCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCchhhhcc
Confidence            44578899999999999988776532          1233555543222                 112233333 5777


Q ss_pred             ecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccc
Q 021744           75 ANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKV  152 (308)
Q Consensus        75 s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~  152 (308)
                      -|---+ ++++..|-++--|+.+|+.+.. ...-.+.+..+...|-+.. -.|...|+|.+|.+... +++..+..|.++
T Consensus       218 LPyHfLL~~~~~~G~L~Y~DVS~GklVa~-~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk-ePLvKiLcH~g~  295 (545)
T KOG1272|consen  218 LPYHFLLVAASEAGFLKYQDVSTGKLVAS-IRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK-EPLVKILCHRGP  295 (545)
T ss_pred             cchhheeeecccCCceEEEeechhhhhHH-HHccCCccchhhcCCccceEEEcCCCceEEecCCCCc-chHHHHHhcCCC
Confidence            887777 9999999999999998876632 2233334556666676655 56888999999999988 777778889999


Q ss_pred             eEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE-EcCCCEEEEEcCCcEEEEE-cCCC---ceeeeeC
Q 021744          153 VSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM-ISEGPWIFIGVTNFVKAWN-TQTN---TDLSLSG  227 (308)
Q Consensus       153 v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~d~~i~~wd-~~~~---~~~~~~~  227 (308)
                      |.+++++++|.+++|.+.|..++|||++....+.++..+.+...+ .++..+|+++....+.+|- .-.+   ....+..
T Consensus       296 V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~  375 (545)
T KOG1272|consen  296 VSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMN  375 (545)
T ss_pred             cceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhh
Confidence            999999999999999999999999999998877777765555555 3556677777788899994 2221   1112222


Q ss_pred             C--CCCEEEEEEeCC--EEEEEcCCCeEEEE
Q 021744          228 P--VGQVYAMAVGND--LLFAGTQDGAILAW  254 (308)
Q Consensus       228 ~--~~~v~~~~~~~~--~l~~g~~dg~i~iw  254 (308)
                      |  ..+|..+.|.|-  .|-.|...|.-.|.
T Consensus       376 H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil  406 (545)
T KOG1272|consen  376 HRCGGPVEDLRFCPYEDVLGIGHAGGITSIL  406 (545)
T ss_pred             hccCcccccceeccHHHeeeccccCCceeEe
Confidence            2  348999999985  66666666554444

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.34  E-value=8e-10  Score=97.56  Aligned_cols=206  Identities=12%  Similarity=0.010  Sum_probs=130.3

Q ss_pred             CCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeC---CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCC
Q 021744           86 NNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEK---CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG  161 (308)
Q Consensus        86 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~---d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~  161 (308)
                      ...|.++|.+..+..  ....+...+....|+|++.. ++...   ...|++||+.++. . ..+..+...+.+++|+|+
T Consensus       169 ~~~l~~~d~~g~~~~--~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-~-~~~~~~~~~~~~~~~spD  244 (417)
T TIGR02800       169 RYELQVADYDGANPQ--TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-R-EKVASFPGMNGAPAFSPD  244 (417)
T ss_pred             cceEEEEcCCCCCCE--EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-E-EEeecCCCCccceEECCC
Confidence            345777877533221  12223334667789999976 44332   3589999998873 2 233345566778999999


Q ss_pred             CCEEE-EeeCCC--cEEEEeCCCCeEEEEEeCCCee--EEEEcCCCEEEEEc--CC--cEEEEEcCCCceeeeeCCCCCE
Q 021744          162 SDKLY-SGSKDE--TVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIGV--TN--FVKAWNTQTNTDLSLSGPVGQV  232 (308)
Q Consensus       162 ~~~l~-s~s~dg--~v~~wd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~--d~--~i~~wd~~~~~~~~~~~~~~~v  232 (308)
                      ++.|+ +.+.++  .|++||+.+++......+....  ..+.++++.|+..+  .+  .|.++|+.+++...+..+....
T Consensus       245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~  324 (417)
T TIGR02800       245 GSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYN  324 (417)
T ss_pred             CCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence            98775 445444  5889999887654433333222  24467888877543  23  6888899888766665556667


Q ss_pred             EEEEEeCC--EEEEEcCCC---eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee----ceEEEEeecC
Q 021744          233 YAMAVGND--LLFAGTQDG---AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV----SFIMFIGQNN  301 (308)
Q Consensus       233 ~~~~~~~~--~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~----s~~i~~~~~~  301 (308)
                      ..+.|+|+  +++.++.++   .|.+||+.++.     ...+.... .... .|+||+++|+.+.    ...+++...+
T Consensus       325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~-----~~~l~~~~-~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG-----ERVLTDTG-LDESPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             cCeEECCCCCEEEEEEccCCceEEEEEeCCCCC-----eEEccCCC-CCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence            78899998  666666655   78888988742     22222222 2334 8999999888544    2355555533

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.34  E-value=5.5e-11  Score=108.14  Aligned_cols=180  Identities=16%  Similarity=0.173  Sum_probs=134.2

Q ss_pred             CCCe-eeccCCCcEEEEECCCCCCcccccceeeee---eeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCccc
Q 021744           77 NTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKT---DILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQK  151 (308)
Q Consensus        77 ~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~  151 (308)
                      +... +.+..++.+-+||...+.............   ...+.+++..-. ++|+.-+.|.+|+.... +.-..+.||++
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d-n~p~~l~GHeG  176 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED-NKPIRLKGHEG  176 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc-CCcceecccCC
Confidence            3344 888888999999997665443333222222   222333444333 77888899999999844 33336899999


Q ss_pred             ceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEE--EEeCCCeeEEE-EcCCCEEEE-EcCCcEEEEEcCCCceeeeeC
Q 021744          152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG--VINLGGEVGCM-ISEGPWIFI-GVTNFVKAWNTQTNTDLSLSG  227 (308)
Q Consensus       152 ~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~--~~~~~~~v~~~-~~~~~~l~~-~~d~~i~~wd~~~~~~~~~~~  227 (308)
                      .|.++.++.++.+++++|.|.++++|++++.+...  -+.|...+... ..+. .+++ +-|.+.++|+....+...+.+
T Consensus       177 ~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~~~l~~y~~  255 (967)
T KOG0974|consen  177 SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNGTQLEVYDE  255 (967)
T ss_pred             ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceEEEEEecccceehhhhh
Confidence            99999999999999999999999999999987765  34476666544 4444 5555 559999999877666667777


Q ss_pred             CCC-CEEEEEEeCC--EEEEEcCCCeEEEEEcCC
Q 021744          228 PVG-QVYAMAVGND--LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       228 ~~~-~v~~~~~~~~--~l~~g~~dg~i~iwd~~~  258 (308)
                      |.. .++.++..++  .+++++.|+.+++||+..
T Consensus       256 h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  256 HSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             hhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            764 6899999988  899999999999999765

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=1.1e-10  Score=99.98  Aligned_cols=249  Identities=10%  Similarity=0.104  Sum_probs=168.6

Q ss_pred             CccCCCCceeEEEeecCCCCCCCCCCceEEecCCCeEEEeecCCCCC-CC---------CCcccccCCCCC------Ccc
Q 021744            2 DFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNR-FP---------CPYLHRELPLPP------AAT   65 (308)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~i~~W~~~~~~~-~~---------~~~~~~~~~~~~------~~~   65 (308)
                      ||||.+-+-|+       ....|+-=++|||..--.|+++|...-.. +.         ...|..+.....      ...
T Consensus        47 dfe~p~ast~i-------k~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ie  119 (703)
T KOG2321|consen   47 DFEMPTASTRI-------KVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIE  119 (703)
T ss_pred             hcCCcccccee-------EecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceee
Confidence            67777666555       22235556788888999999999765321 00         000111000000      000


Q ss_pred             c------cccc-------eeEEe-cCCCeeeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCc-eEEeeCCCe
Q 021744           66 A------NGAA-------AKRFA-NNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGN-CMYGEKCKF  130 (308)
Q Consensus        66 g------h~~~-------~i~~s-~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~d~~  130 (308)
                      -      |...       .++++ |...+..++....|.=.+++.|+.+. +.......+.+|..++-.. +++|+.+|.
T Consensus       120 fHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~-P~~~~~~~lN~v~in~~hgLla~Gt~~g~  198 (703)
T KOG2321|consen  120 FHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLN-PFETDSGELNVVSINEEHGLLACGTEDGV  198 (703)
T ss_pred             ehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccccc-ccccccccceeeeecCccceEEecccCce
Confidence            1      1111       45554 34444566666678888888887652 3333445578888877654 488889999


Q ss_pred             EEEEEcCCCceeeeEee------Cccc-----ceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCe--eEEE
Q 021744          131 LHSWTVGDGFKLLTQLE------GHQK-----VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE--VGCM  197 (308)
Q Consensus       131 i~iwd~~~~~~~~~~~~------~h~~-----~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~--v~~~  197 (308)
                      |..||.++. .....+.      .|.+     .|+++.|+.+|-.++.|..+|.|.|||+++.+++..-.|...  +..+
T Consensus       199 VEfwDpR~k-srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l  277 (703)
T KOG2321|consen  199 VEFWDPRDK-SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKL  277 (703)
T ss_pred             EEEecchhh-hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeee
Confidence            999999987 4454443      2333     499999998899999999999999999999998877765543  4444


Q ss_pred             -Ec--C-CCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744          198 -IS--E-GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       198 -~~--~-~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~  259 (308)
                       +.  + +..+++.....+++||-.+++..........++.+++-|+  +++++-++..+..|-+..-
T Consensus       278 ~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  278 DWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             cccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence             21  2 3456666677899999999999866667777999999999  8999999999888877654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=6e-10  Score=90.60  Aligned_cols=218  Identities=14%  Similarity=0.130  Sum_probs=141.3

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCc---e---
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGF---K---  141 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~---~---  141 (308)
                      .++|++.-.. |++..|-+||+||-... ............+.+++|-|.+..  +.|+ -+-|.+|.....-   .   
T Consensus       103 ~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~r~~~  180 (445)
T KOG2139|consen  103 GVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNANRNIR  180 (445)
T ss_pred             eEeechhhhhhhhhccCcEEEEeccCCC-CCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccccccc
Confidence            5788886555 99999999999998652 222222233345889999887733  4444 4668899865221   1   


Q ss_pred             -------eeeEeeCcccceEEEEEeCCCCEEEEeeC-CCcEEEEeCCCCeEEEEEe-CCCee--EEEEcCCCEEEEEc-C
Q 021744          142 -------LLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCASGQCAGVIN-LGGEV--GCMISEGPWIFIGV-T  209 (308)
Q Consensus       142 -------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~v~~wd~~~~~~~~~~~-~~~~v--~~~~~~~~~l~~~~-d  209 (308)
                             .+....+| .+|++|.|++|+..+++++. |..|.+||..+++.+.... ..+-+  ...+|++.+++++. |
T Consensus       181 ~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~d  259 (445)
T KOG2139|consen  181 MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCD  259 (445)
T ss_pred             cccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccc
Confidence                   11223455 68999999999999998876 5689999999988776653 22333  33478999888766 9


Q ss_pred             CcEEEEEcCC-CceeeeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccc---------cceecc-----c
Q 021744          210 NFVKAWNTQT-NTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFE---------PAASLK-----V  271 (308)
Q Consensus       210 ~~i~~wd~~~-~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~---------~~~~~~-----~  271 (308)
                      +..++|+... ..........+.|...+|+|.   +|++.+..-.++-...........         ++..+.     .
T Consensus       260 avfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~a  339 (445)
T KOG2139|consen  260 AVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICA  339 (445)
T ss_pred             ceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhc
Confidence            9999996543 333333334558999999998   566666554444333332211111         111111     1


Q ss_pred             c----CCCeEE-EEecCCCeEEEee
Q 021744          272 H----TDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       272 ~----~~~v~~-~~s~d~~~l~~s~  291 (308)
                      .    .+...+ +|.|.|.+|++..
T Consensus       340 g~~l~cgeaq~lawDpsGeyLav~f  364 (445)
T KOG2139|consen  340 GQRLCCGEAQCLAWDPSGEYLAVIF  364 (445)
T ss_pred             CcccccCccceeeECCCCCEEEEEE
Confidence            1    345667 9999999999765

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.33  E-value=1.4e-10  Score=102.38  Aligned_cols=183  Identities=9%  Similarity=0.029  Sum_probs=115.0

Q ss_pred             eeEEecCCCe-eeccCC---CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-E-EeeCC--CeEEEEEcCCCcee
Q 021744           71 AKRFANNTWG-RNNNFN---NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-M-YGEKC--KFLHSWTVGDGFKL  142 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~d--~~i~iwd~~~~~~~  142 (308)
                      ..+|+|+|+. +....+   ..|.+||+.+++..  ....+......+.|+|++.. + +.+.+  ..|++|++.++ + 
T Consensus       194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~--~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~-~-  269 (417)
T TIGR02800       194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE--KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK-Q-  269 (417)
T ss_pred             cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE--EeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC-C-
Confidence            5689999998 554433   47999999876432  11222333556789999865 3 33443  45888998876 3 


Q ss_pred             eeEeeCcccceEEEEEeCCCCEEEEeeC-CC--cEEEEeCCCCeEEEEEeCCCee--EEEEcCCCEEEEEc-CC---cEE
Q 021744          143 LTQLEGHQKVVSGITLPSGSDKLYSGSK-DE--TVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIGV-TN---FVK  213 (308)
Q Consensus       143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg--~v~~wd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~-d~---~i~  213 (308)
                      ...+..+........|+|+++.|+..+. ++  .|.++|+.+++...........  ..+++++++++.+. ++   .|.
T Consensus       270 ~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~  349 (417)
T TIGR02800       270 LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIA  349 (417)
T ss_pred             EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEE
Confidence            3344445555567899999998876654 33  5888888877654333233222  24468888888654 43   789


Q ss_pred             EEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCC---eEEEEEcCC
Q 021744          214 AWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDG---AILAWKFNV  258 (308)
Q Consensus       214 ~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg---~i~iwd~~~  258 (308)
                      +||+.++....+... .......|+|+  .|+..+.++   .+++.+...
T Consensus       350 ~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       350 VMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             EEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence            999988766544332 23345689998  555554443   355555443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.33  E-value=4e-10  Score=88.11  Aligned_cols=128  Identities=12%  Similarity=0.190  Sum_probs=89.5

Q ss_pred             CeEEEEEcCCCceeeeEeeC-cccceEEEEEeCCCCEEEE--eeCCCcEEEEeCCCCeEEEEEeCCCee-EEEEcCCCEE
Q 021744          129 KFLHSWTVGDGFKLLTQLEG-HQKVVSGITLPSGSDKLYS--GSKDETVRVWDCASGQCAGVINLGGEV-GCMISEGPWI  204 (308)
Q Consensus       129 ~~i~iwd~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s--~s~dg~v~~wd~~~~~~~~~~~~~~~v-~~~~~~~~~l  204 (308)
                      +...+|.++........+.- ..++|.+++|+|+++.++.  |..+..|.+||++ ++.+..+.....- ..++|+|++|
T Consensus        37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l  115 (194)
T PF08662_consen   37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGRFL  115 (194)
T ss_pred             eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCCceEEEECCCCCEE
Confidence            34455555433233444432 3457999999999988654  4467899999997 6666666533222 2346889999


Q ss_pred             EEEc----CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcC------CCeEEEEEcCC
Q 021744          205 FIGV----TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ------DGAILAWKFNV  258 (308)
Q Consensus       205 ~~~~----d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~------dg~i~iwd~~~  258 (308)
                      ++++    .|.|.+||.++.+.+....|.. +..++|+|+  +|++++.      |+.++||++..
T Consensus       116 ~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  116 VLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             EEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence            9754    4679999999888875445554 789999999  7776654      78899999865

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.32  E-value=2.7e-09  Score=91.71  Aligned_cols=165  Identities=16%  Similarity=0.257  Sum_probs=113.2

Q ss_pred             EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--EcC
Q 021744          123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISE  200 (308)
Q Consensus       123 ~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~~  200 (308)
                      ++-..++.|.+.|..+. +.+..+.........+.++||+++++.++.||.|.++|+.+.+.+.+++.......+  +++
T Consensus        10 V~~~~~~~v~viD~~t~-~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~D   88 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATN-KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPD   88 (369)
T ss_dssp             EEEGGGTEEEEEETTT--SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--T
T ss_pred             EEecCCCEEEEEECCCC-eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCC
Confidence            45567899999999998 788888865444456789999999999999999999999999999999965555444  689


Q ss_pred             CCEEEEEc--CCcEEEEEcCCCcee-eeeC-------CCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccce
Q 021744          201 GPWIFIGV--TNFVKAWNTQTNTDL-SLSG-------PVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAA  267 (308)
Q Consensus       201 ~~~l~~~~--d~~i~~wd~~~~~~~-~~~~-------~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~  267 (308)
                      |++++++.  .+.+.++|.++.+.+ .+..       ....+..+..+|.   ++++--+-+.|.+.|......  ....
T Consensus        89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~--~~~~  166 (369)
T PF02239_consen   89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN--LKVT  166 (369)
T ss_dssp             TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC--EEEE
T ss_pred             CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc--ccee
Confidence            99999765  889999999999877 3332       2346777877777   555555668898889877532  1222


Q ss_pred             eccccCCCeEE-EEecCCCeEEEee
Q 021744          268 SLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       268 ~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      .+ .-...... .|+|++++++++.
T Consensus       167 ~i-~~g~~~~D~~~dpdgry~~va~  190 (369)
T PF02239_consen  167 TI-KVGRFPHDGGFDPDGRYFLVAA  190 (369)
T ss_dssp             EE-E--TTEEEEEE-TTSSEEEEEE
T ss_pred             ee-cccccccccccCcccceeeecc
Confidence            33 23445556 9999999987654

...

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.31  E-value=3.1e-10  Score=88.72  Aligned_cols=147  Identities=11%  Similarity=0.067  Sum_probs=102.4

Q ss_pred             eeEEecCCCe--eecc---------CCCcEEEEECCCCCCccccc-ceeeeeeeeeeeecCCce---EEeeCCCeEEEEE
Q 021744           71 AKRFANNTWG--RNNN---------FNNHSNNYRAGNSKNSNINN-RAVIKTDILCRNWVQGNC---MYGEKCKFLHSWT  135 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~---------~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~g~~d~~i~iwd  135 (308)
                      .+-|+|+|.+  +...         .-+...+|.++..+...... ......+..+.|+|++..   +.|..+..|.+||
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd   89 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD   89 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence            4677788876  3322         11345666663332221122 223345999999999965   4466778999999


Q ss_pred             cCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCC---CcEEEEeCCCCeEEEEEeCCCeeEEE-EcCCCEEEEEc---
Q 021744          136 VGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCASGQCAGVINLGGEVGCM-ISEGPWIFIGV---  208 (308)
Q Consensus       136 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~v~~wd~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~---  208 (308)
                      ++ . +.+..+.  ...+..+.|+|+|++|+.++.+   |.+.+||.++.+.+.+..+.....+. +|+|++++++.   
T Consensus        90 ~~-~-~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~  165 (194)
T PF08662_consen   90 VK-G-KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTSP  165 (194)
T ss_pred             Cc-c-cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEecc
Confidence            97 3 4566654  5677899999999999988754   67999999999999888876654433 68999998642   


Q ss_pred             ----CCcEEEEEcCCCc
Q 021744          209 ----TNFVKAWNTQTNT  221 (308)
Q Consensus       209 ----d~~i~~wd~~~~~  221 (308)
                          |+.++||+.....
T Consensus       166 r~~~dng~~Iw~~~G~~  182 (194)
T PF08662_consen  166 RLRVDNGFKIWSFQGRL  182 (194)
T ss_pred             ceeccccEEEEEecCeE
Confidence                6789999986443

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.30  E-value=1.9e-11  Score=111.15  Aligned_cols=141  Identities=11%  Similarity=0.078  Sum_probs=121.2

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      --++++|+.-+.|.+|+....            ..+..+.||++.  .+.++-||.+ ++.|.|.++|+|++++.+.+..
T Consensus       145 ~~~i~~gsv~~~iivW~~~~d------------n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~  212 (967)
T KOG0974|consen  145 ELYIASGSVFGEIIVWKPHED------------NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC  212 (967)
T ss_pred             EEEEEeccccccEEEEecccc------------CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc
Confidence            457899999999999997743            222357899999  8899999999 9999999999999999988876


Q ss_pred             ccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcc-cceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744          103 NNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~  181 (308)
                      .-.+|...+..|.|.+. ..+++++|-+.++|+.+..  .+..+++|. +.|..++.+++...++|++.|+.+++||+..
T Consensus       213 ~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~~--~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  213 TGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNGT--QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ccccccceeEEEEeccc-eeEEeccceEEEEEecccc--eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            77889999999999998 7799999999999977654  355778775 5789999999888999999999999998864

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.30  E-value=1.6e-11  Score=104.65  Aligned_cols=120  Identities=18%  Similarity=0.328  Sum_probs=99.0

Q ss_pred             eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe--CCCeeEEE--Ec--CCCEEEEEc-CCcEE
Q 021744          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN--LGGEVGCM--IS--EGPWIFIGV-TNFVK  213 (308)
Q Consensus       141 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~--~~~~v~~~--~~--~~~~l~~~~-d~~i~  213 (308)
                      .+..++.||++.|.++.|+.+|.+|++||.|-.+.|||.-..+.+..+.  |...|.++  .|  +++++++|. |..|+
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            3456789999999999999999999999999999999999888888887  55666655  33  466777776 99999


Q ss_pred             EEEcCCCc---------ee--eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCC
Q 021744          214 AWNTQTNT---------DL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTT  260 (308)
Q Consensus       214 ~wd~~~~~---------~~--~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~  260 (308)
                      ++|+...+         ..  -+..|...|..|+..|+   .+.++++||+|+-+|++...
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph  181 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH  181 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence            99998521         11  35678889999999887   89999999999999999754

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.30  E-value=7.6e-10  Score=95.24  Aligned_cols=230  Identities=14%  Similarity=0.106  Sum_probs=152.9

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCeeeccCCCcEEEEECCCCCCccccc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINN  104 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~  104 (308)
                      +..++|....||.+|+|+...+      -++                ..|.|.   +..+..++--.|.+.-........
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~------~~~----------------~e~~p~---~~~s~t~~~~~w~L~~~~s~~k~~   58 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKN------QLQ----------------QEFAPI---ASLSGTCTYTKWGLSADYSPMKWL   58 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCc------eee----------------eeeccc---hhccCcceeEEEEEEeccchHHHH
Confidence            4578999999999999998776      011                122222   334444555667652211110000


Q ss_pred             ceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEee--CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744          105 RAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLE--GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~  181 (308)
                      ..    -.....+.+... +-|...|.|.+|++..+ +....+.  .|.+.|.++.++.+-..|.|++.|+.+..|+...
T Consensus        59 ~~----~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g-~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~  133 (541)
T KOG4547|consen   59 SL----EKAKKASLDTSMLVLGTPQGSVLLYSVAGG-EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE  133 (541)
T ss_pred             hH----HHHhhccCCceEEEeecCCccEEEEEecCC-eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc
Confidence            00    000011222222 66778899999999988 6766665  6999999999998889999999999999999999


Q ss_pred             CeEEEEEeC-CCeeE--EEEcCCCEEEEEcCCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--------EEEEEcCCC
Q 021744          182 GQCAGVINL-GGEVG--CMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--------LLFAGTQDG  249 (308)
Q Consensus       182 ~~~~~~~~~-~~~v~--~~~~~~~~l~~~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--------~l~~g~~dg  249 (308)
                      .+.+..++. ...+.  |+.+|++.++++ .++|++||+++++.+ .+.+|.++|++++|..+        .|.+...+.
T Consensus       134 ~~~~~~~~~~~~~~~sl~is~D~~~l~~a-s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r  212 (541)
T KOG4547|consen  134 KVIIRIWKEQKPLVSSLCISPDGKILLTA-SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAER  212 (541)
T ss_pred             ceeeeeeccCCCccceEEEcCCCCEEEec-cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccccc
Confidence            999988883 33333  446787777654 578999999999988 89999999999999643        444555566


Q ss_pred             eEEEEEcCCCCcccccceeccccCCCeEE-EE-ecCCC
Q 021744          250 AILAWKFNVTTNCFEPAASLKVHTDSNRA-HF-SRDVT  285 (308)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~-s~d~~  285 (308)
                      .+.+|-+............+.....++.. .+ ..|+.
T Consensus       213 ~i~~w~v~~~~kkks~~~sl~~~dipv~~ds~~~ed~~  250 (541)
T KOG4547|consen  213 GITVWVVEKEDKKKSLSCSLTVPDIPVTSDSGLLEDGT  250 (541)
T ss_pred             ceeEEEEEcccccchhheeeccCCCCeEeccccccccc
Confidence            78888776532212344455544555555 33 34444

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.30  E-value=4.5e-10  Score=95.65  Aligned_cols=206  Identities=12%  Similarity=0.138  Sum_probs=136.2

Q ss_pred             eEEecCCC--eeeccCCCcEEEEECCCCCCccccc--ceeeee-eeeeee-----ecCC-ceEEeeCCCeEEEEEcCCCc
Q 021744           72 KRFANNTW--GRNNNFNNHSNNYRAGNSKNSNINN--RAVIKT-DILCRN-----WVQG-NCMYGEKCKFLHSWTVGDGF  140 (308)
Q Consensus        72 i~~s~~g~--~~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~~-~~~~~~-----~~~~-~~~~g~~d~~i~iwd~~~~~  140 (308)
                      +.+.++++  ++.-.....+.+|+...+.....++  ...... ..+-.|     .+.+ ..+.|-.-|.|.+.|.... 
T Consensus       127 ~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~-  205 (636)
T KOG2394|consen  127 TNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINF-  205 (636)
T ss_pred             eeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhh-
Confidence            34444433  3555556678999886433222111  111111 222222     1222 3366777888888887653 


Q ss_pred             eeeeEee----CcccceEEEEEeCC-CCEEEEeeCCCcEEEEeCCC--------------CeEEEEEe-----CCCe---
Q 021744          141 KLLTQLE----GHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCAS--------------GQCAGVIN-----LGGE---  193 (308)
Q Consensus       141 ~~~~~~~----~h~~~v~~~~~~~~-~~~l~s~s~dg~v~~wd~~~--------------~~~~~~~~-----~~~~---  193 (308)
                      +..+.+.    -.+..|+++.|-|. ...++.+-.+|.+.++|.+-              +.......     ...+   
T Consensus       206 ~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~  285 (636)
T KOG2394|consen  206 EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVAR  285 (636)
T ss_pred             HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccce
Confidence            2222111    13478999999884 46677888899999997642              11111110     1122   


Q ss_pred             -------eE--EEEcCCCEEEE-EcCCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCC
Q 021744          194 -------VG--CMISEGPWIFI-GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT  260 (308)
Q Consensus       194 -------v~--~~~~~~~~l~~-~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~  260 (308)
                             +.  ++++||++||+ +.||.++|||..+.+++ .++..-+...|++|+||  ++++|++|.-|.||.+... 
T Consensus       286 w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er-  364 (636)
T KOG2394|consen  286 WHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER-  364 (636)
T ss_pred             eEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc-
Confidence                   21  34579999995 55999999999998887 55556678999999999  9999999999999999997 


Q ss_pred             cccccceeccccCCCeEE-EEec
Q 021744          261 NCFEPAASLKVHTDSNRA-HFSR  282 (308)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~-~~s~  282 (308)
                         +.+..-++|..+|+. +|.|
T Consensus       365 ---RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  365 ---RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ---eEEEeccccccceeeEeecc
Confidence               788888999999999 9985

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.30  E-value=1.6e-09  Score=87.24  Aligned_cols=245  Identities=9%  Similarity=0.018  Sum_probs=152.2

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe--eeccCCCcEEEEECCCCCCcccc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      -.+.....|+.|.+|+...-+ +-|.          ...|..+- .++|||||+.  .+...|-.|.||.+.+.+..  .
T Consensus        62 ~ilC~~yk~~~vqvwsl~Qpe-w~ck----------Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~--~  128 (447)
T KOG4497|consen   62 HILCVAYKDPKVQVWSLVQPE-WYCK----------IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY--L  128 (447)
T ss_pred             eeeeeeeccceEEEEEeecce-eEEE----------eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE--E
Confidence            345556678899999865320 0010          11122223 6899999987  78889999999999765432  2


Q ss_pred             cceeeeeeeeeeeecCCceEE-e------------------------------------eCCCeEEEEEcCCCceeeeEe
Q 021744          104 NRAVIKTDILCRNWVQGNCMY-G------------------------------------EKCKFLHSWTVGDGFKLLTQL  146 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~-g------------------------------------~~d~~i~iwd~~~~~~~~~~~  146 (308)
                      ....+..+...+|.++|.+.+ .                                    -.+..+.+||---. ..+..+
T Consensus       129 ~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le-ykv~aY  207 (447)
T KOG4497|consen  129 LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE-YKVYAY  207 (447)
T ss_pred             ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh-heeeee
Confidence            222333466677788875521 1                                    12455677775433 222222


Q ss_pred             eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEE--------------------------------------
Q 021744          147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI--------------------------------------  188 (308)
Q Consensus       147 ~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~--------------------------------------  188 (308)
                      . ..-.+..++|+|.+++|+.|+.|+.+++-+--+-++..++                                      
T Consensus       208 e-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a  286 (447)
T KOG4497|consen  208 E-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA  286 (447)
T ss_pred             e-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence            2 2356889999999999999999999987543322211111                                      


Q ss_pred             ----------------------e----CCCe-----eEEEEcCCCEEEEEcC---CcEEEEEcCCCceeeeeCCCCCEEE
Q 021744          189 ----------------------N----LGGE-----VGCMISEGPWIFIGVT---NFVKAWNTQTNTDLSLSGPVGQVYA  234 (308)
Q Consensus       189 ----------------------~----~~~~-----v~~~~~~~~~l~~~~d---~~i~~wd~~~~~~~~~~~~~~~v~~  234 (308)
                                            +    .+.+     ...+++|..++++-.|   +.+-+||++..+.........+|..
T Consensus       287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~pira  366 (447)
T KOG4497|consen  287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRA  366 (447)
T ss_pred             CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeE
Confidence                                  0    0000     0011245556665444   4789999998887755556778999


Q ss_pred             EEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          235 MAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       235 ~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      ..|.|.  .|+.+.....+++|.....    ..+.. ....-.|.. .|..+|..++..+
T Consensus       367 f~WdP~~prL~vctg~srLY~W~psg~----~~V~v-P~~GF~i~~l~W~~~g~~i~l~~  421 (447)
T KOG4497|consen  367 FEWDPGRPRLVVCTGKSRLYFWAPSGP----RVVGV-PKKGFNIQKLQWLQPGEFIVLCG  421 (447)
T ss_pred             EEeCCCCceEEEEcCCceEEEEcCCCc----eEEec-CCCCceeeeEEecCCCcEEEEEc
Confidence            999998  7777777778999987763    33332 223355666 8998998887544

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.30  E-value=1.2e-10  Score=97.98  Aligned_cols=240  Identities=10%  Similarity=0.036  Sum_probs=167.1

Q ss_pred             Cccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC---ceEEeeCCCeEEEEEc
Q 021744           63 AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTV  136 (308)
Q Consensus        63 ~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~d~~i~iwd~  136 (308)
                      .+.+|.+.  .+-|+..|.. ++|+.|..|.+||...+++......+|...+....|.|..   ..++.+.||.+++=.+
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i  216 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI  216 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence            44577777  7999999999 9999999999999988888777778888888777787765   4488899999998776


Q ss_pred             CCCc--eeeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCCeEEEEEe---CCCe--e--EEEE--cC-CCE
Q 021744          137 GDGF--KLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVIN---LGGE--V--GCMI--SE-GPW  203 (308)
Q Consensus       137 ~~~~--~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~~~~~~~~---~~~~--v--~~~~--~~-~~~  203 (308)
                      ....  +....+..|.++|..++..|+. ..|.|++.|+.+.-.|++.+.+-..+.   ....  |  ..+.  |. ...
T Consensus       217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~  296 (559)
T KOG1334|consen  217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE  296 (559)
T ss_pred             ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence            5331  2234455699999999999976 558999999999999999876554443   2222  2  2222  33 335


Q ss_pred             EEEEc-CCcEEEEEcCCCcee-------eee------CCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCc------
Q 021744          204 IFIGV-TNFVKAWNTQTNTDL-------SLS------GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN------  261 (308)
Q Consensus       204 l~~~~-d~~i~~wd~~~~~~~-------~~~------~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~------  261 (308)
                      ++++. |..+++||.+.-...       .+.      ...-.|++++|+.+  -++++-.|-.|++|.-.-+..      
T Consensus       297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~  376 (559)
T KOG1334|consen  297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS  376 (559)
T ss_pred             cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence            56655 889999998754322       111      22346899999966  555556677899985332211      


Q ss_pred             c--cccce-eccccCCC--eEE--EEecCCCeEEEee-ceEEEEeecCc
Q 021744          262 C--FEPAA-SLKVHTDS--NRA--HFSRDVTSLLGSV-SFIMFIGQNNK  302 (308)
Q Consensus       262 ~--~~~~~-~~~~~~~~--v~~--~~s~d~~~l~~s~-s~~i~~~~~~~  302 (308)
                      .  ...+. .+++|.+.  |..  -|-|...|++++. ...||+|....
T Consensus       377 s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t  425 (559)
T KOG1334|consen  377 SPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT  425 (559)
T ss_pred             cchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence            0  01222 26677653  444  5778888888555 78899987543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=2.8e-09  Score=94.10  Aligned_cols=203  Identities=9%  Similarity=0.025  Sum_probs=121.3

Q ss_pred             CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeC---CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCC
Q 021744           87 NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEK---CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS  162 (308)
Q Consensus        87 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~---d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~  162 (308)
                      ..|.++|.+.....  ....+...+....|+|+|.. ++.+.   ...|++||+.++. .. .+....+.+...+|+||+
T Consensus       176 ~~L~~~D~dG~~~~--~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-~~-~l~~~~g~~~~~~~SPDG  251 (427)
T PRK02889        176 YQLQISDADGQNAQ--SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-RR-VVANFKGSNSAPAWSPDG  251 (427)
T ss_pred             cEEEEECCCCCCce--EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-EE-EeecCCCCccceEECCCC
Confidence            45677776432211  12233445777899999966 44432   3469999998873 32 333344566789999999


Q ss_pred             CEEE-EeeCCCcEEEEe--CCCCeEEEEEe-CCCee--EEEEcCCCEEEEEc--CCcEEEE--EcCCCceeeeeCCCCCE
Q 021744          163 DKLY-SGSKDETVRVWD--CASGQCAGVIN-LGGEV--GCMISEGPWIFIGV--TNFVKAW--NTQTNTDLSLSGPVGQV  232 (308)
Q Consensus       163 ~~l~-s~s~dg~v~~wd--~~~~~~~~~~~-~~~~v--~~~~~~~~~l~~~~--d~~i~~w--d~~~~~~~~~~~~~~~v  232 (308)
                      +.|+ +.+.++...+|.  +..++ ...+. +....  ..++++++.|+..+  ++...+|  ++.+++...+.......
T Consensus       252 ~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~  330 (427)
T PRK02889        252 RTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYN  330 (427)
T ss_pred             CEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCc
Confidence            8876 567788766664  44444 33333 22221  24578999877443  3444555  55565544333233334


Q ss_pred             EEEEEeCC--EEEEEcCCC---eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee----ceEEEEeec
Q 021744          233 YAMAVGND--LLFAGTQDG---AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV----SFIMFIGQN  300 (308)
Q Consensus       233 ~~~~~~~~--~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~----s~~i~~~~~  300 (308)
                      ....|+|+  +++..+.++   .|.+||+.++..     ..+... ..... .|+|||+.|+.+.    ...++....
T Consensus       331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~-----~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        331 TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV-----TALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             CceEECCCCCEEEEEEccCCcEEEEEEECCCCCe-----EEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence            56789998  666555443   699999987632     223222 22345 9999999988554    334555543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.29  E-value=5.5e-09  Score=83.69  Aligned_cols=169  Identities=16%  Similarity=0.177  Sum_probs=117.5

Q ss_pred             CcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCc--ccceEEEEEeCCCCE
Q 021744           87 NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGH--QKVVSGITLPSGSDK  164 (308)
Q Consensus        87 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~  164 (308)
                      +.|.|||=...+.+  ........+..+.+..+-  +..-..+.|+||...+.-+.++.+...  .....+++-..+..+
T Consensus        75 NkviIWDD~k~~~i--~el~f~~~I~~V~l~r~r--iVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   75 NKVIIWDDLKERCI--IELSFNSEIKAVKLRRDR--IVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             ceEEEEecccCcEE--EEEEeccceeeEEEcCCe--EEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence            57999994333222  344455567777776653  333456899999988543566666532  233333333333344


Q ss_pred             EE-EeeCCCcEEEEeCCCCeE---EEEEeCCCeeEEEE--cCCCEEEEEc-CC-cEEEEEcCCCcee-eeeC--CCCCEE
Q 021744          165 LY-SGSKDETVRVWDCASGQC---AGVINLGGEVGCMI--SEGPWIFIGV-TN-FVKAWNTQTNTDL-SLSG--PVGQVY  233 (308)
Q Consensus       165 l~-s~s~dg~v~~wd~~~~~~---~~~~~~~~~v~~~~--~~~~~l~~~~-d~-~i~~wd~~~~~~~-~~~~--~~~~v~  233 (308)
                      |+ -|-.-|.|.+-|+...+.   ...-.|...+.|+.  .+|..+|+++ .| -|++||..+++.+ .+..  ....|.
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy  230 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY  230 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence            43 344568999999987655   33344999999984  6799999887 66 5899999999887 4442  345799


Q ss_pred             EEEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744          234 AMAVGND--LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       234 ~~~~~~~--~l~~g~~dg~i~iwd~~~~  259 (308)
                      +|+|||+  +|+++|+.|+++||.++..
T Consensus       231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            9999999  9999999999999998864

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.28  E-value=1.9e-09  Score=87.95  Aligned_cols=187  Identities=12%  Similarity=0.089  Sum_probs=135.5

Q ss_pred             eeeecCCceE-EeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCC--CcEEEEeCCCCeEEEEEeC
Q 021744          114 CRNWVQGNCM-YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD--ETVRVWDCASGQCAGVINL  190 (308)
Q Consensus       114 ~~~~~~~~~~-~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d--g~v~~wd~~~~~~~~~~~~  190 (308)
                      ..|..+..++ .|+.|| .++|....-.+ ..........|..+-|+.  .+++..+.+  +.+++.+++.+..+..+..
T Consensus        11 ~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f   86 (391)
T KOG2110|consen   11 IGFNQDSTLLSVGSKDG-YKIFSCSPFEK-CFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIFF   86 (391)
T ss_pred             eeeccceeEEEccCCCc-eeEEecCchHH-hhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEec
Confidence            3355555554 455555 46777665422 111122234455666664  455555544  3599999999999999999


Q ss_pred             CCeeEEEEcCCCEEEEEcCCcEEEEEcCCCcee-eee---CCCCCEEEEEEeCC--EEEE--EcCCCeEEEEEcCCCCcc
Q 021744          191 GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLS---GPVGQVYAMAVGND--LLFA--GTQDGAILAWKFNVTTNC  262 (308)
Q Consensus       191 ~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~-~~~---~~~~~v~~~~~~~~--~l~~--g~~dg~i~iwd~~~~~~~  262 (308)
                      +.++.++--+.+.|++.-...|++||+++.+++ ++.   .+...+.++++++.  +++-  ....|.|.+||+.+-   
T Consensus        87 pt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl---  163 (391)
T KOG2110|consen   87 PTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL---  163 (391)
T ss_pred             CCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc---
Confidence            999999988888888888777999999999887 332   34455666666665  6664  345789999999985   


Q ss_pred             cccceeccccCCCeEE-EEecCCCeEEEee----ceEEEEeecCceeEEeC
Q 021744          263 FEPAASLKVHTDSNRA-HFSRDVTSLLGSV----SFIMFIGQNNKGVVCYR  308 (308)
Q Consensus       263 ~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~----s~~i~~~~~~~~~~~~~  308 (308)
                       +++..+..|.+.+.+ +|+++|.+|+++.    -+.+|...+.+.+.=||
T Consensus       164 -~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR  213 (391)
T KOG2110|consen  164 -QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR  213 (391)
T ss_pred             -eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence             889999999999999 9999999999666    46667777888887776

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.26  E-value=7.4e-12  Score=111.36  Aligned_cols=180  Identities=13%  Similarity=0.228  Sum_probs=134.7

Q ss_pred             cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744          104 NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~  182 (308)
                      +.+|...|.|+.|--.|.+ ++|+.|..++||.+.+. .++....||.+.|+.++.+.+..+++++|.|..|++|.+.++
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~  264 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG  264 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccch-hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence            3567777888888888876 89999999999999998 899999999999999999998889999999999999999999


Q ss_pred             eEEEEEe-CCCeeEEEEcCCCEEEEEcCCcEEEEEcCCCceee------ee-------------------C------CCC
Q 021744          183 QCAGVIN-LGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLS------LS-------------------G------PVG  230 (308)
Q Consensus       183 ~~~~~~~-~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~~------~~-------------------~------~~~  230 (308)
                      .++..+. |.+.++++...... .++.||++++||.+-.....      +.                   +      ...
T Consensus       265 ~pvsvLrghtgavtaiafsP~~-sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~  343 (1113)
T KOG0644|consen  265 APVSVLRGHTGAVTAIAFSPRA-SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNH  343 (1113)
T ss_pred             chHHHHhccccceeeeccCccc-cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccc
Confidence            9999887 88889887422211 34459999999987211000      00                   0      000


Q ss_pred             CEEEEEEeCC-------------EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE
Q 021744          231 QVYAMAVGND-------------LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG  289 (308)
Q Consensus       231 ~v~~~~~~~~-------------~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~  289 (308)
                      ....+++...             +.+++-.+-.+.+|++.++    .+.+.+.+|...+.. .++|-...++-
T Consensus       344 e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g----~l~H~l~ghsd~~yvLd~Hpfn~ri~m  412 (1113)
T KOG0644|consen  344 EFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG----QLLHNLMGHSDEVYVLDVHPFNPRIAM  412 (1113)
T ss_pred             hhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc----hhhhhhcccccceeeeeecCCCcHhhh
Confidence            1111222211             3344445567888998887    777888899999998 99998777763

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=9e-10  Score=89.60  Aligned_cols=182  Identities=16%  Similarity=0.163  Sum_probs=125.2

Q ss_pred             eeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEee-CcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCC----Ce
Q 021744          111 DILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLE-GHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCAS----GQ  183 (308)
Q Consensus       111 ~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~----~~  183 (308)
                      +..+++++.-.+ +++..|-.|++|+-... . ...++ ..+..|++++|-|.+ +.|+.|... -|.+|....    +.
T Consensus       101 lr~~aWhqH~~~fava~nddvVriy~ksst-~-pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r  177 (445)
T KOG2139|consen  101 LRGVAWHQHIIAFAVATNDDVVRIYDKSST-C-PTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANR  177 (445)
T ss_pred             eeeEeechhhhhhhhhccCcEEEEeccCCC-C-CceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccc
Confidence            555666665444 88999999999997764 2 22233 245789999999965 456666664 599997642    11


Q ss_pred             --------EEEEEeC--CCeeEEE-E-cCCCEEEEEc--CCcEEEEEcCCCceeeee-CCCCCEEEEEEeCC--EEEEEc
Q 021744          184 --------CAGVINL--GGEVGCM-I-SEGPWIFIGV--TNFVKAWNTQTNTDLSLS-GPVGQVYAMAVGND--LLFAGT  246 (308)
Q Consensus       184 --------~~~~~~~--~~~v~~~-~-~~~~~l~~~~--d~~i~~wd~~~~~~~~~~-~~~~~v~~~~~~~~--~l~~g~  246 (308)
                              +.+.+++  ..+++.+ + +|+..+++++  +..|.+||..+++.+.+. -..+.+.-+.||||  +|++++
T Consensus       178 ~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt  257 (445)
T KOG2139|consen  178 NIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT  257 (445)
T ss_pred             ccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec
Confidence                    1222332  3456666 3 6788888765  779999999999888554 34567888999999  899999


Q ss_pred             CCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE--eeceEEEEee
Q 021744          247 QDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG--SVSFIMFIGQ  299 (308)
Q Consensus       247 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~--s~s~~i~~~~  299 (308)
                      -|+..++|.....   +...+ ..-..+.|.. .|+|+|++|+-  +++-.+|...
T Consensus       258 ~davfrlw~e~q~---wt~er-w~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~  309 (445)
T KOG2139|consen  258 CDAVFRLWQENQS---WTKER-WILGSGRVQTACWSPCGSFLLFACSGSPRLYSLT  309 (445)
T ss_pred             ccceeeeehhccc---ceecc-eeccCCceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence            9999999976543   12222 2223347877 99999999873  3366777654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.23  E-value=1.2e-09  Score=101.28  Aligned_cols=196  Identities=10%  Similarity=0.066  Sum_probs=128.3

Q ss_pred             cccccc--eeEEec-CCCe-eeccCCCcEEEEECCCCCCccc----ccce--eeeeeeeeeeecCCce-EEeeCCCeEEE
Q 021744           65 TANGAA--AKRFAN-NTWG-RNNNFNNHSNNYRAGNSKNSNI----NNRA--VIKTDILCRNWVQGNC-MYGEKCKFLHS  133 (308)
Q Consensus        65 ~gh~~~--~i~~s~-~g~~-~s~~~d~~i~vwd~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~-~~g~~d~~i~i  133 (308)
                      ..|...  .++.++ ++.+ +|||.||+||+|+...-.-...    ....  ....+..+...+.+.. +.++.||.|++
T Consensus      1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred             hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence            345555  566665 4588 9999999999999943211100    1111  2233666666676654 88899999999


Q ss_pred             EEcCCCc------eeeeEeeCc-ccceEEE-EEeC-CCC-EEEEeeCCCcEEEEeCCCCeEEEEEe---CCCeeEEE--E
Q 021744          134 WTVGDGF------KLLTQLEGH-QKVVSGI-TLPS-GSD-KLYSGSKDETVRVWDCASGQCAGVIN---LGGEVGCM--I  198 (308)
Q Consensus       134 wd~~~~~------~~~~~~~~h-~~~v~~~-~~~~-~~~-~l~s~s~dg~v~~wd~~~~~~~~~~~---~~~~v~~~--~  198 (308)
                      .++.-..      ...+....+ .+.+.+| ++.. ... .++.+..-+.|..||++.....+.++   ..+.++++  .
T Consensus      1125 ~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVID 1204 (1431)
T ss_pred             EEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEec
Confidence            9987521      111111222 2333333 3433 234 67888888999999999887777766   34556655  4


Q ss_pred             cCCCEEEEEc-CCcEEEEEcCCCcee-e-eeCCCCCEEEEEEeCC------EEEEEc-CCCeEEEEEcCCCC
Q 021744          199 SEGPWIFIGV-TNFVKAWNTQTNTDL-S-LSGPVGQVYAMAVGND------LLFAGT-QDGAILAWKFNVTT  260 (308)
Q Consensus       199 ~~~~~l~~~~-d~~i~~wd~~~~~~~-~-~~~~~~~v~~~~~~~~------~l~~g~-~dg~i~iwd~~~~~  260 (308)
                      +.+.+++.|. .|.+.+||++-+.++ . ...+..++..+..+|-      .+.+++ ..+.|.+|++.++.
T Consensus      1205 p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1205 PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred             CCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence            6688999987 889999999998877 2 2334467777777653      444444 67889999999873

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.22  E-value=4e-09  Score=90.91  Aligned_cols=170  Identities=13%  Similarity=0.151  Sum_probs=130.0

Q ss_pred             EEeeCCCeEEEEEcCCCceeeeEeeCc---ccceEEEEE--------------------eCCCCEEEEeeCCCcEEEEeC
Q 021744          123 MYGEKCKFLHSWTVGDGFKLLTQLEGH---QKVVSGITL--------------------PSGSDKLYSGSKDETVRVWDC  179 (308)
Q Consensus       123 ~~g~~d~~i~iwd~~~~~~~~~~~~~h---~~~v~~~~~--------------------~~~~~~l~s~s~dg~v~~wd~  179 (308)
                      +....||.+++|+...+ +....+...   .+..++..|                    +.+-..++-|...|.|.+|+.
T Consensus         9 A~~~~~g~l~iw~t~~~-~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~   87 (541)
T KOG4547|consen    9 ALSTGDGRLRIWDTAKN-QLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSV   87 (541)
T ss_pred             eecCCCCeEEEEEccCc-eeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEe
Confidence            67788999999999887 444444321   122223332                    123346888899999999999


Q ss_pred             CCCeEEEEEe---CCCeeEEEE-cC-CCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCe
Q 021744          180 ASGQCAGVIN---LGGEVGCMI-SE-GPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGA  250 (308)
Q Consensus       180 ~~~~~~~~~~---~~~~v~~~~-~~-~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~  250 (308)
                      ..++.-..+.   |.+.+.++. .+ -..|.+++ |..+..|+......+ ...+....+.+++++||  .+++++  +.
T Consensus        88 ~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~  165 (541)
T KOG4547|consen   88 AGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQ  165 (541)
T ss_pred             cCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ce
Confidence            9999988887   777888775 33 33455554 999999999998888 67777888999999999  887776  68


Q ss_pred             EEEEEcCCCCcccccceeccccCCCeEE-EEecC-----CCeEEEee----ceEEEEee
Q 021744          251 ILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRD-----VTSLLGSV----SFIMFIGQ  299 (308)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d-----~~~l~~s~----s~~i~~~~  299 (308)
                      |++||++++    +.+.+|.+|.++|++ .|.-+     |.+++++.    .+.+|...
T Consensus       166 ik~~~~~~k----evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  166 IKVLDIETK----EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             EEEEEccCc----eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            999999997    889999999999999 99887     78888665    44455544

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.20  E-value=5.5e-09  Score=84.62  Aligned_cols=275  Identities=7%  Similarity=0.016  Sum_probs=162.7

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccC---CCCCCcccc---ccc-eeEEecCCCe---eeccCCCcEEEEEC
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHREL---PLPPAATAN---GAA-AKRFANNTWG---RNNNFNNHSNNYRA   94 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~---~~~~~~~gh---~~~-~i~~s~~g~~---~s~~~d~~i~vwd~   94 (308)
                      .|.++|||..+|.|-++.-....+....+....+   |....+..-   +.. .++|.++++.   ...+.|++|++|.+
T Consensus        36 ~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi  115 (433)
T KOG1354|consen   36 YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKI  115 (433)
T ss_pred             ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeee
Confidence            4678999999999999864433211111111111   111111111   111 6888887776   78889999999988


Q ss_pred             CCCCCc------------------ccc-----------------cceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCC
Q 021744           95 GNSKNS------------------NIN-----------------NRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDG  139 (308)
Q Consensus        95 ~~~~~~------------------~~~-----------------~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~  139 (308)
                      ......                  ..+                 ...|.-.+.++.+..+........|-.|.+|+++-.
T Consensus       116 ~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~  195 (433)
T KOG1354|consen  116 RERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEII  195 (433)
T ss_pred             eccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeecccccc
Confidence            321100                  000                 012233355666666666666778899999998743


Q ss_pred             cee--eeEeeCc-----ccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCCeEE----EEEe-CCC---------ee---
Q 021744          140 FKL--LTQLEGH-----QKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCA----GVIN-LGG---------EV---  194 (308)
Q Consensus       140 ~~~--~~~~~~h-----~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~~~~----~~~~-~~~---------~v---  194 (308)
                      .+.  +-.++.+     +.-|++..|+|.. +.++-.+..|+|++-|++....-    +.+. ...         .+   
T Consensus       196 d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSI  275 (433)
T KOG1354|consen  196 DQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSI  275 (433)
T ss_pred             CCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhh
Confidence            221  2223332     3568899999954 66777888899999999953211    1121 111         12   


Q ss_pred             EEE--EcCCCEEEEEcCCcEEEEEcCCC--ceeeeeCCC------------CC---EEEEEEeCC--EEEEEcCCCeEEE
Q 021744          195 GCM--ISEGPWIFIGVTNFVKAWNTQTN--TDLSLSGPV------------GQ---VYAMAVGND--LLFAGTQDGAILA  253 (308)
Q Consensus       195 ~~~--~~~~~~l~~~~d~~i~~wd~~~~--~~~~~~~~~------------~~---v~~~~~~~~--~l~~g~~dg~i~i  253 (308)
                      ..+  +.+|+++++-.--+|++||+...  ...+...|.            +.   -..++|+.+  ++++|+....+++
T Consensus       276 SDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frv  355 (433)
T KOG1354|consen  276 SDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRV  355 (433)
T ss_pred             hceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEE
Confidence            222  45688888777789999999543  222444442            12   256788888  9999999999999


Q ss_pred             EEcCCCCccc----------------ccceecc-cc-------------CCCeEE-EEecCCCeEEEeeceEEEEee
Q 021744          254 WKFNVTTNCF----------------EPAASLK-VH-------------TDSNRA-HFSRDVTSLLGSVSFIMFIGQ  299 (308)
Q Consensus       254 wd~~~~~~~~----------------~~~~~~~-~~-------------~~~v~~-~~s~d~~~l~~s~s~~i~~~~  299 (308)
                      |++..+....                ++-.... +.             ..-+.. +|+|....++.++...+|+.+
T Consensus       356 f~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnnlyif~  432 (433)
T KOG1354|consen  356 FNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNNLYIFQ  432 (433)
T ss_pred             ecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeeecCceEEec
Confidence            9965443100                0000000 00             112445 889998888888877888765

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=1.3e-08  Score=90.18  Aligned_cols=205  Identities=15%  Similarity=0.033  Sum_probs=124.1

Q ss_pred             cEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeC---CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCC
Q 021744           88 HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEK---CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD  163 (308)
Q Consensus        88 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~---d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~  163 (308)
                      .|.++|.+.....  ....+...+....|+|+|.. ++.+.   ...|.+|++.++. . ..+....+.+...+|+||++
T Consensus       180 ~l~~~d~~g~~~~--~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~-~-~~l~~~~g~~~~~~~SpDG~  255 (430)
T PRK00178        180 TLQRSDYDGARAV--TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR-R-EQITNFEGLNGAPAWSPDGS  255 (430)
T ss_pred             EEEEECCCCCCce--EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC-E-EEccCCCCCcCCeEECCCCC
Confidence            4777787644321  22233344677889999976 44432   2469999998873 2 23333344556789999998


Q ss_pred             EEE-EeeCCC--cEEEEeCCCCeEEEEEeCCCee--EEEEcCCCEEEEEc--CC--cEEEEEcCCCceeeeeCCCCCEEE
Q 021744          164 KLY-SGSKDE--TVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIGV--TN--FVKAWNTQTNTDLSLSGPVGQVYA  234 (308)
Q Consensus       164 ~l~-s~s~dg--~v~~wd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~--d~--~i~~wd~~~~~~~~~~~~~~~v~~  234 (308)
                      .|+ +.+.++  .|.+||+.+++...........  ..++++++.++..+  ++  .|+++|+.+++...+.........
T Consensus       256 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~  335 (430)
T PRK00178        256 KLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNAR  335 (430)
T ss_pred             EEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccc
Confidence            876 555555  5888899987654433332222  23467888776443  33  688889888876544322233445


Q ss_pred             EEEeCC--EEEEEc-CCC--eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee----ceEEEEeecCc
Q 021744          235 MAVGND--LLFAGT-QDG--AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV----SFIMFIGQNNK  302 (308)
Q Consensus       235 ~~~~~~--~l~~g~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~----s~~i~~~~~~~  302 (308)
                      ..|+|+  .++..+ .++  .|.+||+.++..     ..+.. ...... .|+|||+.++.+.    ...|++...+.
T Consensus       336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-----~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-----RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             eEECCCCCEEEEEEccCCceEEEEEECCCCCE-----EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            789998  554444 333  578889887532     22221 112224 8999999998544    34566665443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.19  E-value=5.2e-08  Score=84.84  Aligned_cols=217  Identities=14%  Similarity=0.059  Sum_probs=131.9

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN  104 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~  104 (308)
                      +..++.++.++.+.-+|..++..     +.. ........+    ...  .++.. +.++.++.+..+|.++++..-...
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~-----~W~-~~~~~~~~~----~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~  132 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKR-----LWR-VDLDERLSG----GVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAK  132 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcE-----eee-ecCCCCccc----ceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeec
Confidence            56788888899999999887721     000 011111110    122  23555 778889999999998887543221


Q ss_pred             ceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccce-----EEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744          105 RAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVV-----SGITLPSGSDKLYSGSKDETVRVWDC  179 (308)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~l~s~s~dg~v~~wd~  179 (308)
                      .  ...+.......++..+.+..++.++.+|.+++ +.+.++......+     ....+.  +..++.+..++.+..+|+
T Consensus       133 ~--~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG-~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~  207 (377)
T TIGR03300       133 L--SSEVLSPPLVANGLVVVRTNDGRLTALDAATG-ERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDL  207 (377)
T ss_pred             c--CceeecCCEEECCEEEEECCCCeEEEEEcCCC-ceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEc
Confidence            1  11111111122445567778999999999998 5666554332211     111222  246788888999999999


Q ss_pred             CCCeEEEEEeCCCe-----------e-EE-EEcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCCEEEEEc
Q 021744          180 ASGQCAGVINLGGE-----------V-GC-MISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGT  246 (308)
Q Consensus       180 ~~~~~~~~~~~~~~-----------v-~~-~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~  246 (308)
                      ++++.+.......+           + .. +..++..++.+.++.+..||.++++........ .........+.++.++
T Consensus       208 ~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~~~~p~~~~~~vyv~~  286 (377)
T TIGR03300       208 QTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-SYQGPAVDDNRLYVTD  286 (377)
T ss_pred             cCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC-CccCceEeCCEEEEEC
Confidence            99988766542111           0 01 122343444455999999999999877322222 2233444555777788


Q ss_pred             CCCeEEEEEcCCCC
Q 021744          247 QDGAILAWKFNVTT  260 (308)
Q Consensus       247 ~dg~i~iwd~~~~~  260 (308)
                      .+|.+..+|..+++
T Consensus       287 ~~G~l~~~d~~tG~  300 (377)
T TIGR03300       287 ADGVVVALDRRSGS  300 (377)
T ss_pred             CCCeEEEEECCCCc
Confidence            99999999998873

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.19  E-value=1.7e-07  Score=80.47  Aligned_cols=232  Identities=13%  Similarity=0.097  Sum_probs=140.7

Q ss_pred             eeEEecCCCe-eecc----CCCcEEEEECCCC--CCcccccce-eeeeeeeeeeecCCceE--EeeCCCeEEEEEcCCCc
Q 021744           71 AKRFANNTWG-RNNN----FNNHSNNYRAGNS--KNSNINNRA-VIKTDILCRNWVQGNCM--YGEKCKFLHSWTVGDGF  140 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~----~d~~i~vwd~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~--~g~~d~~i~iwd~~~~~  140 (308)
                      -++++|+++. .+..    .++.|..|++...  +........ .......+.+.+++..+  +--.+|.|.++++....
T Consensus        41 ~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g  120 (345)
T PF10282_consen   41 WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDG  120 (345)
T ss_dssp             CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred             eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCc
Confidence            5899999998 3333    3678999988653  222111111 12225567788888773  33368999999998631


Q ss_pred             eeee---Eee----------CcccceEEEEEeCCCCEEEEeeC-CCcEEEEeCCCCe--EE--EEEe--CC-Ce-eEEEE
Q 021744          141 KLLT---QLE----------GHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCASGQ--CA--GVIN--LG-GE-VGCMI  198 (308)
Q Consensus       141 ~~~~---~~~----------~h~~~v~~~~~~~~~~~l~s~s~-dg~v~~wd~~~~~--~~--~~~~--~~-~~-v~~~~  198 (308)
                      .+..   .+.          .......++.++|++++++.... ...|.+|++....  ..  ..+.  .. ++ -..+.
T Consensus       121 ~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~  200 (345)
T PF10282_consen  121 SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFS  200 (345)
T ss_dssp             EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-
T ss_pred             ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEc
Confidence            2222   121          11245678999999998876543 4579999987654  32  2233  22 22 33456


Q ss_pred             cCCCEEEEEc--CCcEEEEEcC--CCcee---eeeC----C--CCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcc
Q 021744          199 SEGPWIFIGV--TNFVKAWNTQ--TNTDL---SLSG----P--VGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC  262 (308)
Q Consensus       199 ~~~~~l~~~~--d~~i~~wd~~--~~~~~---~~~~----~--~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~  262 (308)
                      ++++++++..  +++|.++++.  ++...   ....    .  ......|.++||   ++++....+.|.+|++......
T Consensus       201 pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~  280 (345)
T PF10282_consen  201 PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT  280 (345)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred             CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence            8888887544  8899999988  44322   1111    1  126889999999   4555556789999999543222


Q ss_pred             cccceeccccCCCeEE-EEecCCCeEEEee----ceEEEEeecCc
Q 021744          263 FEPAASLKVHTDSNRA-HFSRDVTSLLGSV----SFIMFIGQNNK  302 (308)
Q Consensus       263 ~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~----s~~i~~~~~~~  302 (308)
                      ++.+..+.......+. +++|+|++|+++.    .+.+|......
T Consensus       281 l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t  325 (345)
T PF10282_consen  281 LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT  325 (345)
T ss_dssp             EEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             eEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence            3555555554555666 9999999999877    55555554333

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.16  E-value=4.7e-09  Score=84.94  Aligned_cols=235  Identities=14%  Similarity=0.175  Sum_probs=156.7

Q ss_pred             CCccccccc---eeEEecCCCeeeccCCCcEEEEEC-CCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEc
Q 021744           62 PAATANGAA---AKRFANNTWGRNNNFNNHSNNYRA-GNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTV  136 (308)
Q Consensus        62 ~~~~gh~~~---~i~~s~~g~~~s~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~  136 (308)
                      ..+.||...   .+-...+...++.+.|.++|||-- +.+|.-..........+.+..+.+.... +.|-..|++.-+.+
T Consensus        18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~   97 (404)
T KOG1409|consen   18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL   97 (404)
T ss_pred             hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence            344567665   233333333499999999999954 4455442222223334666677766655 66778889888876


Q ss_pred             CCCc---eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEc-CCcE
Q 021744          137 GDGF---KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGV-TNFV  212 (308)
Q Consensus       137 ~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i  212 (308)
                      ....   ...+.+..|...+..+-|+...+++++.+.|..+.-.-.+.+..+..+.......+.-.+-.+...|. .+.|
T Consensus        98 sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqv  177 (404)
T KOG1409|consen   98 SEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQI  177 (404)
T ss_pred             hhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccce
Confidence            5331   44666778999999999998889999999999888777777776655543222222211111444565 5665


Q ss_pred             EEEEcCC--Ccee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCe
Q 021744          213 KAWNTQT--NTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTS  286 (308)
Q Consensus       213 ~~wd~~~--~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~  286 (308)
                      .+-.+..  -.++ ++.+|.+.+.+++|.|.  .+++|..|..+.+||+...+   ....++.+|...|.. .+-+--+.
T Consensus       178 t~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~---g~~~el~gh~~kV~~l~~~~~t~~  254 (404)
T KOG1409|consen  178 TMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK---GTAYELQGHNDKVQALSYAQHTRQ  254 (404)
T ss_pred             EEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc---ceeeeeccchhhhhhhhhhhhhee
Confidence            5444332  2333 78999999999999988  99999999999999998753   445677788888877 66665555


Q ss_pred             EEEee-ceEEEEee
Q 021744          287 LLGSV-SFIMFIGQ  299 (308)
Q Consensus       287 l~~s~-s~~i~~~~  299 (308)
                      |.+.. +..|-.++
T Consensus       255 l~S~~edg~i~~w~  268 (404)
T KOG1409|consen  255 LISCGEDGGIVVWN  268 (404)
T ss_pred             eeeccCCCeEEEEe
Confidence            55444 44444444

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.15  E-value=2e-10  Score=109.93  Aligned_cols=176  Identities=12%  Similarity=0.059  Sum_probs=127.1

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCcc-ccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAAT-ANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      ..+.+||+.|+.+++|..+.+           ++...+-. |.... .+.|+.+|+. ..+..||.+.+|.+...  +..
T Consensus      2220 ~~~Yltgs~dgsv~~~~w~~~-----------~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk--~~~ 2286 (2439)
T KOG1064|consen 2220 DPYYLTGSQDGSVRMFEWGHG-----------QQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK--PYT 2286 (2439)
T ss_pred             CceEEecCCCceEEEEeccCC-----------CeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCc--cee
Confidence            467899999999999998877           22222111 22111 6899999999 88899999999998632  222


Q ss_pred             ccceeeeeeeeeeeecCCceE--EeeCCCeEEEEEcCC--CceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 021744          103 NNRAVIKTDILCRNWVQGNCM--YGEKCKFLHSWTVGD--GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~--~g~~d~~i~iwd~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd  178 (308)
                      ..+-|.+......|-.....-  ..+.++.+.+||..-  ....+.  ..|.+.++++++-|..+.|++|+.+|.|++||
T Consensus      2287 s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D 2364 (2439)
T KOG1064|consen 2287 SWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFD 2364 (2439)
T ss_pred             ccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEee
Confidence            445566655555555433221  234678999999642  223344  78999999999999999999999999999999


Q ss_pred             CCCCeEEEEEeCCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee
Q 021744          179 CASGQCAGVINLGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL  223 (308)
Q Consensus       179 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~  223 (308)
                      ++..+.+..++.      + ....+++.|+ .|.++||++.....+
T Consensus      2365 ~rqrql~h~~~~------~-~~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2365 IRQRQLRHTFQA------L-DTREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred             hHHHHHHHHhhh------h-hhhheeeccCcccceEEEEccccchh
Confidence            998887776663      1 2455677766 899999999876544

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=1e-08  Score=90.29  Aligned_cols=207  Identities=12%  Similarity=0.072  Sum_probs=120.1

Q ss_pred             eeEEecCCCe--e--eccCCC--cEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEee-C----CCeEEEEEcCC
Q 021744           71 AKRFANNTWG--R--NNNFNN--HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGE-K----CKFLHSWTVGD  138 (308)
Q Consensus        71 ~i~~s~~g~~--~--s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~-~----d~~i~iwd~~~  138 (308)
                      .-+|+|||+.  +  +...++  .|.+.++.+++..  .............|+|+|.. +..+ .    +-.+.+|++..
T Consensus       189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~--~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~  266 (428)
T PRK01029        189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK--KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLET  266 (428)
T ss_pred             cceEccCCCceEEEEEEccCCCceEEEEECCCCCce--EeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeeccc
Confidence            4599999974  2  444444  4666677666432  22222333455789999965 3322 2    33445577664


Q ss_pred             C--ceeeeEeeCcccceEEEEEeCCCCEEEEee-CCCcEEEE--eCCC-CeEEEEEe-CCCe--eEEEEcCCCEEEEE-c
Q 021744          139 G--FKLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVW--DCAS-GQCAGVIN-LGGE--VGCMISEGPWIFIG-V  208 (308)
Q Consensus       139 ~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~dg~v~~w--d~~~-~~~~~~~~-~~~~--v~~~~~~~~~l~~~-~  208 (308)
                      +  .+..+...++.......+|+|||+.|+..+ .+|...+|  ++.. +.....+. ....  ...++|+++.|+.. .
T Consensus       267 g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~  346 (428)
T PRK01029        267 GAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSV  346 (428)
T ss_pred             CCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEc
Confidence            2  122233333334456789999999877655 46655555  4432 22233333 2222  23457899988754 3


Q ss_pred             -C--CcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEE-EEcC--CCeEEEEEcCCCCcccccceeccccCCCeEE-E
Q 021744          209 -T--NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLF-AGTQ--DGAILAWKFNVTTNCFEPAASLKVHTDSNRA-H  279 (308)
Q Consensus       209 -d--~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~-~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~  279 (308)
                       +  ..|.+||+.+++...+......+....|+||  .|+ ++..  ...|+++|+..++     ...+......+.. +
T Consensus       347 ~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~-----~~~Lt~~~g~~~~p~  421 (428)
T PRK01029        347 IKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK-----TRKIVIGSGEKRFPS  421 (428)
T ss_pred             CCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-----EEEeecCCCcccCce
Confidence             2  3799999999988766544456778999998  443 4433  3568888888753     2223333444556 8


Q ss_pred             EecCC
Q 021744          280 FSRDV  284 (308)
Q Consensus       280 ~s~d~  284 (308)
                      |+|-.
T Consensus       422 Ws~~~  426 (428)
T PRK01029        422 WGAFP  426 (428)
T ss_pred             ecCCC
Confidence            87753

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=1e-08  Score=90.85  Aligned_cols=220  Identities=11%  Similarity=0.027  Sum_probs=124.4

Q ss_pred             cCCCCceeEEEeecC----CCCCCCCCCceEEecC-C--CeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEec
Q 021744            4 DAHGGNKRVFHRLGG----GGGDGGGGGLSTADTR-Q--KVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFAN   76 (308)
Q Consensus         4 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~s~-d--~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~   76 (308)
                      |.+|.|.|+..+...    +.-..+ |..|+..+. +  ..|++||..++..   .      ... ...++.. ..+|+|
T Consensus       204 d~dG~~~~~l~~~~~~~~~p~wSPD-G~~La~~s~~~g~~~L~~~dl~tg~~---~------~lt-~~~g~~~-~~~wSP  271 (448)
T PRK04792        204 DYDGYNEQMLLRSPEPLMSPAWSPD-GRKLAYVSFENRKAEIFVQDIYTQVR---E------KVT-SFPGING-APRFSP  271 (448)
T ss_pred             eCCCCCceEeecCCCcccCceECCC-CCEEEEEEecCCCcEEEEEECCCCCe---E------Eec-CCCCCcC-CeeECC
Confidence            567888776554432    222222 455555443 3  3688888876611   0      011 1112211 479999


Q ss_pred             CCCe--eeccCCCc--EEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEee-CC--CeEEEEEcCCCceeeeEeeC
Q 021744           77 NTWG--RNNNFNNH--SNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGE-KC--KFLHSWTVGDGFKLLTQLEG  148 (308)
Q Consensus        77 ~g~~--~s~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~-~d--~~i~iwd~~~~~~~~~~~~~  148 (308)
                      ||+.  ++.+.++.  |.++|+++++..  ....+........|+|++.. +..+ .+  ..|+++|+.++ +.. .+..
T Consensus       272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~--~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g-~~~-~Lt~  347 (448)
T PRK04792        272 DGKKLALVLSKDGQPEIYVVDIATKALT--RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG-KVS-RLTF  347 (448)
T ss_pred             CCCEEEEEEeCCCCeEEEEEECCCCCeE--ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-CEE-EEec
Confidence            9997  45566665  677788766432  12222223456789999965 3333 33  35677777776 332 2221


Q ss_pred             cccceEEEEEeCCCCEEEEeeC-CC--cEEEEeCCCCeEEEEEeC-CCeeEEEEcCCCEEEEEc--CC--cEEEEEcCCC
Q 021744          149 HQKVVSGITLPSGSDKLYSGSK-DE--TVRVWDCASGQCAGVINL-GGEVGCMISEGPWIFIGV--TN--FVKAWNTQTN  220 (308)
Q Consensus       149 h~~~v~~~~~~~~~~~l~s~s~-dg--~v~~wd~~~~~~~~~~~~-~~~v~~~~~~~~~l~~~~--d~--~i~~wd~~~~  220 (308)
                      +.......+|+||+++++..+. ++  .|.++|+.+++....... ...-..++++++.|+...  ++  .+.+++....
T Consensus       348 ~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~  427 (448)
T PRK04792        348 EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR  427 (448)
T ss_pred             CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            2223345789999998876655 33  456678887764322221 111225678999877433  33  4778887655


Q ss_pred             ceeeeeCCCCCEEEEEEeC
Q 021744          221 TDLSLSGPVGQVYAMAVGN  239 (308)
Q Consensus       221 ~~~~~~~~~~~v~~~~~~~  239 (308)
                      ....+..+.+.+...+|+|
T Consensus       428 ~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        428 FKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             ceEECcCCCCCcCCCccCC
Confidence            5556665666677777776

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.11  E-value=1.6e-08  Score=81.88  Aligned_cols=94  Identities=19%  Similarity=0.369  Sum_probs=66.8

Q ss_pred             EeeCCCeEEEEEcC--CCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCe--EEEEEeCCCeeEEEE-
Q 021744          124 YGEKCKFLHSWTVG--DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ--CAGVINLGGEVGCMI-  198 (308)
Q Consensus       124 ~g~~d~~i~iwd~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~--~~~~~~~~~~v~~~~-  198 (308)
                      .|...|.|.+-.+.  .- .++.++.+|.+.+.+++|.+....|.+|..|..+.+||+--.+  ......+...+..++ 
T Consensus       170 vGd~~gqvt~lr~~~~~~-~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~  248 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQNGC-QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY  248 (404)
T ss_pred             ecccccceEEEEEeecCC-ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence            34455555544332  23 6688899999999999999999999999999999999997543  333333666666553 


Q ss_pred             -cCCCEEEE-EcCCcEEEEEcC
Q 021744          199 -SEGPWIFI-GVTNFVKAWNTQ  218 (308)
Q Consensus       199 -~~~~~l~~-~~d~~i~~wd~~  218 (308)
                       +--+.+++ +.|+.|.+||++
T Consensus       249 ~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  249 AQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             hhhheeeeeccCCCeEEEEecc
Confidence             33444554 459999999875

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.10  E-value=3.7e-10  Score=108.14  Aligned_cols=183  Identities=13%  Similarity=0.135  Sum_probs=137.4

Q ss_pred             eEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCc
Q 021744           72 KRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGH  149 (308)
Q Consensus        72 i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h  149 (308)
                      +.-+|.-.+ +||+.||.|++|....++++......-...+..+.|+..|.. ..+..||.+.+|.+..  ++....+.|
T Consensus      2214 ~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p--k~~~s~qch 2291 (2439)
T KOG1064|consen 2214 MTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP--KPYTSWQCH 2291 (2439)
T ss_pred             ecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC--cceeccccC
Confidence            344577777 999999999999998888776555444466888999988865 7778899999999873  567778889


Q ss_pred             ccceEEEEEeCCCCEEEEee---CCCcEEEEeCCCCeEEEE--EeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCc
Q 021744          150 QKVVSGITLPSGSDKLYSGS---KDETVRVWDCASGQCAGV--INLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNT  221 (308)
Q Consensus       150 ~~~v~~~~~~~~~~~l~s~s---~dg~v~~wd~~~~~~~~~--~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~  221 (308)
                      ......+.|-.  ..+++++   .++.+.+||..-......  -.|.+..+++  .|..+++++|+ +|.|++||++..+
T Consensus      2292 nk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2292 NKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred             Cccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH
Confidence            99999998875  5666654   478999999764222211  2266666665  58888888888 9999999999877


Q ss_pred             ee-eeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcCCCCcccccceecc
Q 021744          222 DL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLK  270 (308)
Q Consensus       222 ~~-~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~  270 (308)
                      .. .++.       +. ..++|++|+..|.++||++...    .++.++.
T Consensus      2370 l~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~----~ll~~~p 2407 (2439)
T KOG1064|consen 2370 LRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEF----GLLHTFP 2407 (2439)
T ss_pred             HHHHhhh-------hh-hhheeeccCcccceEEEEcccc----chhhcCc
Confidence            76 3332       22 2239999999999999999985    5555554

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.09  E-value=1.9e-08  Score=81.10  Aligned_cols=270  Identities=11%  Similarity=0.041  Sum_probs=158.9

Q ss_pred             EEEeecCCCCCCCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe--eeccCCCcE
Q 021744           12 VFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG--RNNNFNNHS   89 (308)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~--~s~~~d~~i   89 (308)
                      +|..++..-..|-.|+++|+.+.- .+-+=|..+-+      +|.-..... ...    -+.|+.|.-+  .....|+.|
T Consensus         6 ~fk~~~~~c~fSp~g~yiAs~~~y-rlviRd~~tlq------~~qlf~cld-ki~----yieW~ads~~ilC~~yk~~~v   73 (447)
T KOG4497|consen    6 LFKSLNPFCSFSPCGNYIASLSRY-RLVIRDSETLQ------LHQLFLCLD-KIV----YIEWKADSCHILCVAYKDPKV   73 (447)
T ss_pred             HHHhcCCceeECCCCCeeeeeeee-EEEEeccchhh------HHHHHHHHH-Hhh----heeeeccceeeeeeeeccceE
Confidence            455666666667778899988765 55555555431      000000000 000    3677777777  556678899


Q ss_pred             EEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEE
Q 021744           90 NNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYS  167 (308)
Q Consensus        90 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  167 (308)
                      .+|++...+.-... ..-.......+++|+|+.  .+..-+-.|.+|.+.+.+ . .-++--+..+..++|+||+++.+.
T Consensus        74 qvwsl~Qpew~ckI-deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~-~-~~~~~pK~~~kg~~f~~dg~f~ai  150 (447)
T KOG4497|consen   74 QVWSLVQPEWYCKI-DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK-G-YLLPHPKTNVKGYAFHPDGQFCAI  150 (447)
T ss_pred             EEEEeecceeEEEe-ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce-e-EEecccccCceeEEECCCCceeee
Confidence            99999765443211 112233778899999954  667789999999998863 2 223323455678899999988877


Q ss_pred             eeCC------------------------------------CcEEEEeCCCCeEEEEEeCCCeeEE--EEcCCCEEEEEc-
Q 021744          168 GSKD------------------------------------ETVRVWDCASGQCAGVINLGGEVGC--MISEGPWIFIGV-  208 (308)
Q Consensus       168 ~s~d------------------------------------g~v~~wd~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~-  208 (308)
                      +++-                                    ..+.+||---.-.+..+.-.--+..  .+|.+++|++|+ 
T Consensus       151 ~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsy  230 (447)
T KOG4497|consen  151 LSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSY  230 (447)
T ss_pred             eecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeecc
Confidence            7642                                    1222333211111111111111222  246699999988 


Q ss_pred             CCcEEEEEcCCCc----------------------------------------------------------ee---ee--
Q 021744          209 TNFVKAWNTQTNT----------------------------------------------------------DL---SL--  225 (308)
Q Consensus       209 d~~i~~wd~~~~~----------------------------------------------------------~~---~~--  225 (308)
                      |+.+++.+--+-+                                                          .+   .+  
T Consensus       231 D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp  310 (447)
T KOG4497|consen  231 DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP  310 (447)
T ss_pred             chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccC
Confidence            8877764321100                                                          00   01  


Q ss_pred             ----eCCCCCEEEEEEeCC-EEEEEcCC---CeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE-EeeceEE
Q 021744          226 ----SGPVGQVYAMAVGND-LLFAGTQD---GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL-GSVSFIM  295 (308)
Q Consensus       226 ----~~~~~~v~~~~~~~~-~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~-~s~s~~i  295 (308)
                          ......+--++|++| +.++.-.|   +.+-+||++..     .+...-....+|+. .|.|....|+ ..+...+
T Consensus       311 ~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l-----~l~avLiQk~piraf~WdP~~prL~vctg~srL  385 (447)
T KOG4497|consen  311 PTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL-----KLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRL  385 (447)
T ss_pred             CCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh-----hhhhhhhhccceeEEEeCCCCceEEEEcCCceE
Confidence                112235667999999 44444444   45899999984     34444456778888 9999887776 4557788


Q ss_pred             EEeecC
Q 021744          296 FIGQNN  301 (308)
Q Consensus       296 ~~~~~~  301 (308)
                      |.+.-.
T Consensus       386 Y~W~ps  391 (447)
T KOG4497|consen  386 YFWAPS  391 (447)
T ss_pred             EEEcCC
Confidence            887643

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=4.2e-08  Score=86.40  Aligned_cols=226  Identities=10%  Similarity=-0.061  Sum_probs=124.7

Q ss_pred             ccCCCCceeEEEeecCC----CCCCCCCC--ceEEecCCC--eEEEeecCCCCCCCCCcccccCCCCCCccccccceeEE
Q 021744            3 FDAHGGNKRVFHRLGGG----GGDGGGGG--LSTADTRQK--VCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRF   74 (308)
Q Consensus         3 ~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~s~s~d~--~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~   74 (308)
                      .|.+|+|.|.+.+.+..    .-..|+..  ++.++-.++  .|.+.+...+..         ... ....+... ..+|
T Consensus       170 ~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~---------~~l-t~~~g~~~-~p~w  238 (428)
T PRK01029        170 VDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG---------KKI-LALQGNQL-MPTF  238 (428)
T ss_pred             EcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc---------eEe-ecCCCCcc-ceEE
Confidence            36788988877664322    11122222  222443443  455566665511         001 11112211 4799


Q ss_pred             ecCCCe-e-eccC----CCcEEEEECCCCC--CcccccceeeeeeeeeeeecCCce-EEee-CCCeEEEE--EcCCCcee
Q 021744           75 ANNTWG-R-NNNF----NNHSNNYRAGNSK--NSNINNRAVIKTDILCRNWVQGNC-MYGE-KCKFLHSW--TVGDGFKL  142 (308)
Q Consensus        75 s~~g~~-~-s~~~----d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~g~-~d~~i~iw--d~~~~~~~  142 (308)
                      +|||+. + +...    |-.+.+|++..+.  .................|+|+|.. ++.+ .++...+|  ++......
T Consensus       239 SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~  318 (428)
T PRK01029        239 SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS  318 (428)
T ss_pred             CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc
Confidence            999988 4 3332    3334557765431  111011111112345689999975 4443 45654555  44322122


Q ss_pred             eeEeeCcccceEEEEEeCCCCEEEEeeCC---CcEEEEeCCCCeEEEEEeCCCee--EEEEcCCCEEEE-Ec---CCcEE
Q 021744          143 LTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFI-GV---TNFVK  213 (308)
Q Consensus       143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~v~~wd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~-~~---d~~i~  213 (308)
                      ...+..+...+....|+||++.|+..+.+   ..|.+||+.+++...........  ..+.++++.|+. +.   ...|.
T Consensus       319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~  398 (428)
T PRK01029        319 PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELY  398 (428)
T ss_pred             eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence            34455455667889999999988766543   36999999988765443322222  234678887773 33   34789


Q ss_pred             EEEcCCCceeeeeCCCCCEEEEEEeC
Q 021744          214 AWNTQTNTDLSLSGPVGQVYAMAVGN  239 (308)
Q Consensus       214 ~wd~~~~~~~~~~~~~~~v~~~~~~~  239 (308)
                      ++|+.+++...+....+.+...+|+|
T Consensus       399 ~vdl~~g~~~~Lt~~~g~~~~p~Ws~  424 (428)
T PRK01029        399 LISLITKKTRKIVIGSGEKRFPSWGA  424 (428)
T ss_pred             EEECCCCCEEEeecCCCcccCceecC
Confidence            99999887775555555566677776

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.07  E-value=3.1e-07  Score=80.46  Aligned_cols=227  Identities=15%  Similarity=0.072  Sum_probs=130.9

Q ss_pred             CCceEEecCCCeEEEeecCCCCC-CCCCcccccCCCCCCccccccceeEEecCCCeeeccCCCcEEEEECCCCCCccccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNR-FPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINN  104 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~  104 (308)
                      +..++.++.++.+.-+|..+++. +..+       ...+.  ..  ...+. ++..+.+..++.|..+|.++++.+-...
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~-------~~~~~--~s--sP~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~  187 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTK-------VAGEA--LS--RPVVS-DGLVLVHTSNGMLQALNESDGAVKWTVN  187 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCccccc-------CCCce--ec--CCEEE-CCEEEEECCCCEEEEEEccCCCEeeeec
Confidence            44566777899999999988831 2111       11100  00  11111 3333666778888989988887543221


Q ss_pred             ceeee----eeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCccc-------ceEEEEEeC--CCCEEEEeeCC
Q 021744          105 RAVIK----TDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK-------VVSGITLPS--GSDKLYSGSKD  171 (308)
Q Consensus       105 ~~~~~----~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~-------~v~~~~~~~--~~~~l~s~s~d  171 (308)
                      .....    ....-.. ..+..+.+..++.+..+|..++ +.+........       ....+.-+|  .+..++.++.+
T Consensus       188 ~~~~~~~~~~~~sP~v-~~~~v~~~~~~g~v~a~d~~~G-~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~  265 (394)
T PRK11138        188 LDVPSLTLRGESAPAT-AFGGAIVGGDNGRVSAVLMEQG-QLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN  265 (394)
T ss_pred             CCCCcccccCCCCCEE-ECCEEEEEcCCCEEEEEEccCC-hhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC
Confidence            11000    0000011 1344566778899999999988 44444321100       011111122  24567778889


Q ss_pred             CcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEEcCCCcee-eeeCC-CCCEEEEEEeCCEEEEEcCCC
Q 021744          172 ETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGP-VGQVYAMAVGNDLLFAGTQDG  249 (308)
Q Consensus       172 g~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~-~~~~~-~~~v~~~~~~~~~l~~g~~dg  249 (308)
                      |.+...|..+++.+..............++.+++...++.+..+|..+++.+ ..... .....+..+..+.++.++.+|
T Consensus       266 g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G  345 (394)
T PRK11138        266 GNLVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEG  345 (394)
T ss_pred             CeEEEEECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCC
Confidence            9999999999998877653332222233444444556999999999999876 22211 112333444455888899999


Q ss_pred             eEEEEEcCCCCcccccceecc
Q 021744          250 AILAWKFNVTTNCFEPAASLK  270 (308)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~  270 (308)
                      .|...|..++    +.+...+
T Consensus       346 ~l~~ld~~tG----~~~~~~~  362 (394)
T PRK11138        346 YLHWINREDG----RFVAQQK  362 (394)
T ss_pred             EEEEEECCCC----CEEEEEE
Confidence            9999999987    4444443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.06  E-value=1.7e-07  Score=90.91  Aligned_cols=234  Identities=14%  Similarity=0.111  Sum_probs=142.2

Q ss_pred             CCCCCCceEEecCCCeEEEeecCCCCCCCCCcccc-cCCCC--CC-cccc-ccc-eeEEecCCCe--eeccCCCcEEEEE
Q 021744           22 DGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHR-ELPLP--PA-ATAN-GAA-AKRFANNTWG--RNNNFNNHSNNYR   93 (308)
Q Consensus        22 ~~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~-~~~~~--~~-~~gh-~~~-~i~~s~~g~~--~s~~~d~~i~vwd   93 (308)
                      ....+.++++.+..+.|++||.... ..  ...-. .....  .+ ..++ ..+ .+++.++++.  ++-...+.|+++|
T Consensus       576 d~~~g~lyVaDs~n~rI~v~d~~G~-~i--~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id  652 (1057)
T PLN02919        576 DLLNNRLFISDSNHNRIVVTDLDGN-FI--VQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREID  652 (1057)
T ss_pred             ECCCCeEEEEECCCCeEEEEeCCCC-EE--EEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEe
Confidence            3345678888899999999986532 00  00000 00000  00 0000 112 7899998875  5555567899999


Q ss_pred             CCCCCCcccc--------cce-------eeeeeeeeeeec-CCce-EEeeCCCeEEEEEcCCCceeeeEeeC--------
Q 021744           94 AGNSKNSNIN--------NRA-------VIKTDILCRNWV-QGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG--------  148 (308)
Q Consensus        94 ~~~~~~~~~~--------~~~-------~~~~~~~~~~~~-~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~--------  148 (308)
                      +.++......        ..+       .-.....+++.+ ++.. ++...++.|++||..++. . ..+.+        
T Consensus       653 ~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~-v-~~~~G~G~~~~~~  730 (1057)
T PLN02919        653 FVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV-T-RVFSGDGYERNLN  730 (1057)
T ss_pred             cCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe-E-EEEecCCccccCC
Confidence            8655321000        000       011245678888 4444 777788999999988762 2 22211        


Q ss_pred             -c------ccceEEEEEeCCCCE-EEEeeCCCcEEEEeCCCCeEEEEEe-----------------------CCCeeE-E
Q 021744          149 -H------QKVVSGITLPSGSDK-LYSGSKDETVRVWDCASGQCAGVIN-----------------------LGGEVG-C  196 (308)
Q Consensus       149 -h------~~~v~~~~~~~~~~~-l~s~s~dg~v~~wd~~~~~~~~~~~-----------------------~~~~v~-~  196 (308)
                       +      -.....++++|++.. .++-+.++.|++||+.++.......                       ...+.. +
T Consensus       731 g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva  810 (1057)
T PLN02919        731 GSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL  810 (1057)
T ss_pred             CCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceee
Confidence             1      123567999999884 4566677999999998765321110                       001111 2


Q ss_pred             EEcCCCEEEEEc-CCcEEEEEcCCCceeeeeCC--------------CCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744          197 MISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGP--------------VGQVYAMAVGND--LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       197 ~~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~--------------~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~  259 (308)
                      +.+++.++++-. ++.|++||..++....+.+.              -.....++++++  ++++-+.++.|++||+.++
T Consensus       811 vd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        811 CAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             EeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            346777666655 88999999998876643321              125678999998  7778888999999999886


Q ss_pred             C
Q 021744          260 T  260 (308)
Q Consensus       260 ~  260 (308)
                      .
T Consensus       891 ~  891 (1057)
T PLN02919        891 E  891 (1057)
T ss_pred             c
Confidence            3

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.06  E-value=6.8e-07  Score=75.61  Aligned_cols=256  Identities=5%  Similarity=-0.044  Sum_probs=145.8

Q ss_pred             CCceEEecC----CCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe--eecc---------CCCcEE
Q 021744           26 GGLSTADTR----QKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG--RNNN---------FNNHSN   90 (308)
Q Consensus        26 ~~~~~s~s~----d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~--~s~~---------~d~~i~   90 (308)
                      ...+++-..    .++|.+.|..+.           ........|..... .++|||+.  ++.+         .+..|.
T Consensus        13 ~~v~V~d~~~~~~~~~v~ViD~~~~-----------~v~g~i~~G~~P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~   80 (352)
T TIGR02658        13 RRVYVLDPGHFAATTQVYTIDGEAG-----------RVLGMTDGGFLPNP-VVASDGSFFAHASTVYSRIARGKRTDYVE   80 (352)
T ss_pred             CEEEEECCcccccCceEEEEECCCC-----------EEEEEEEccCCCce-eECCCCCEEEEEeccccccccCCCCCEEE
Confidence            344555554    388999998876           11111111211113 49999998  5555         578899


Q ss_pred             EEECCCCCCcccccceee------eeeeeeeeecCCceEE--eeC-CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCC
Q 021744           91 NYRAGNSKNSNINNRAVI------KTDILCRNWVQGNCMY--GEK-CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG  161 (308)
Q Consensus        91 vwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--g~~-d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~  161 (308)
                      +||..+.+.......+.+      .......++++|+.+.  --. +..|-+.|+.++ +.+.++.- .+...-+..+++
T Consensus        81 v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~-kvv~ei~v-p~~~~vy~t~e~  158 (352)
T TIGR02658        81 VIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK-AFVRMMDV-PDCYHIFPTAND  158 (352)
T ss_pred             EEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC-cEEEEEeC-CCCcEEEEecCC
Confidence            999998876543332211      1245778899997633  323 799999999998 67776653 222222222222


Q ss_pred             CCEEEEeeCCCcEEEEeCCC-CeEE-EEEe--CC-------CeeEEEEc-CCCEEEEEcCCcEEEEEcCCCce-----ee
Q 021744          162 SDKLYSGSKDETVRVWDCAS-GQCA-GVIN--LG-------GEVGCMIS-EGPWIFIGVTNFVKAWNTQTNTD-----LS  224 (308)
Q Consensus       162 ~~~l~s~s~dg~v~~wd~~~-~~~~-~~~~--~~-------~~v~~~~~-~~~~l~~~~d~~i~~wd~~~~~~-----~~  224 (308)
                       ..+ .-+.||......+.+ ++.. ....  +.       .+  .+++ +++++.++..|+|.+.|+...+.     ..
T Consensus       159 -~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP--~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~  234 (352)
T TIGR02658       159 -TFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP--AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIE  234 (352)
T ss_pred             -ccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC--ceEcCCCcEEEEecCCeEEEEecCCCcceecceee
Confidence             112 222444444433332 2211 1111  11       11  2244 78999988889999999654432     21


Q ss_pred             eeC--------CCCCEEEEEEeCC--EEEE-Ec---------CCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecC
Q 021744          225 LSG--------PVGQVYAMAVGND--LLFA-GT---------QDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRD  283 (308)
Q Consensus       225 ~~~--------~~~~v~~~~~~~~--~l~~-g~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d  283 (308)
                      +..        ......-++++|+  .++. ..         ..+.|.++|..+.    +.+..+..- ..+.. +++||
T Consensus       235 ~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~----kvi~~i~vG-~~~~~iavS~D  309 (352)
T TIGR02658       235 AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG----KRLRKIELG-HEIDSINVSQD  309 (352)
T ss_pred             eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC----eEEEEEeCC-CceeeEEECCC
Confidence            111        1233344999988  4443 21         1257999999987    666766643 35555 99999


Q ss_pred             CC-eEEEee----ceEEEEeecCcee
Q 021744          284 VT-SLLGSV----SFIMFIGQNNKGV  304 (308)
Q Consensus       284 ~~-~l~~s~----s~~i~~~~~~~~~  304 (308)
                      ++ +|+++.    ++.++-..+.+.+
T Consensus       310 gkp~lyvtn~~s~~VsViD~~t~k~i  335 (352)
T TIGR02658       310 AKPLLYALSTGDKTLYIFDAETGKEL  335 (352)
T ss_pred             CCeEEEEeCCCCCcEEEEECcCCeEE
Confidence            99 776444    4555555555444

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.05  E-value=1.1e-07  Score=77.23  Aligned_cols=181  Identities=18%  Similarity=0.178  Sum_probs=113.9

Q ss_pred             EecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEe-eCcc-
Q 021744           74 FANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQL-EGHQ-  150 (308)
Q Consensus        74 ~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~-~~h~-  150 (308)
                      ..+++.. ++++.++.|..||..+++.+-...  ....+.......++..+.+..++.++.+|..++ +.+... .... 
T Consensus        32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG-~~~W~~~~~~~~  108 (238)
T PF13360_consen   32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFD--LPGPISGAPVVDGGRVYVGTSDGSLYALDAKTG-KVLWSIYLTSSP  108 (238)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTTSEEEEEEE--CSSCGGSGEEEETTEEEEEETTSEEEEEETTTS-CEEEEEEE-SSC
T ss_pred             EEEeCCEEEEEcCCCEEEEEECCCCCEEEEee--ccccccceeeecccccccccceeeeEecccCCc-ceeeeecccccc
Confidence            4445556 777899999999998886542222  122222222344555566778889999999999 566653 3221 


Q ss_pred             --cceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCC-e----e-------EEE-EcCCCEEEEE-cCCc-EE
Q 021744          151 --KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG-E----V-------GCM-ISEGPWIFIG-VTNF-VK  213 (308)
Q Consensus       151 --~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~-~----v-------~~~-~~~~~~l~~~-~d~~-i~  213 (308)
                        ...........+..++.+..++.|..+|+++|+.+....... .    +       ... ..++ .++++ .++. +.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~  187 (238)
T PF13360_consen  109 PAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVA  187 (238)
T ss_dssp             TCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEE
T ss_pred             ccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEE
Confidence              111222233337788888889999999999999998887322 1    1       122 2345 55544 4775 55


Q ss_pred             EEEcCCCceeeeeCCCCCEEE-EEEeCCEEEEEcCCCeEEEEEcCCCC
Q 021744          214 AWNTQTNTDLSLSGPVGQVYA-MAVGNDLLFAGTQDGAILAWKFNVTT  260 (308)
Q Consensus       214 ~wd~~~~~~~~~~~~~~~v~~-~~~~~~~l~~g~~dg~i~iwd~~~~~  260 (308)
                      + |+.+++... ......+.. .....+.++.++.++.|..||+++++
T Consensus       188 ~-d~~tg~~~w-~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  188 V-DLATGEKLW-SKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             E-ETTTTEEEE-EECSS-ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred             E-ECCCCCEEE-EecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence            5 999998763 222333444 33333477777799999999999984

...

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.03  E-value=6.1e-09  Score=81.28  Aligned_cols=209  Identities=11%  Similarity=0.120  Sum_probs=123.7

Q ss_pred             cCCCCCCCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCeeeccCC------CcE
Q 021744           17 GGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWGRNNNFN------NHS   89 (308)
Q Consensus        17 ~~~~~~~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~~s~~~d------~~i   89 (308)
                      ++...-+..++.++++..|+.+-+.+...-    ....++ .+     .-|.+. ...+...++.+.+..=      +..
T Consensus        92 ~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~----~~~~~~-i~-----~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~  161 (319)
T KOG4714|consen   92 DPNDACTMTDNRVCIGYADGSLAVFSTDKD----LALMSR-IP-----SIHSGSASRKICRHGNSILSGGCGNWNAQDNF  161 (319)
T ss_pred             CCcccccccCCceEecCCCceEEEEechHH----Hhhhhh-cc-----cccccccccceeecccEEecCCcceEeeccce
Confidence            333444555789999999999999987653    001111 11     111122 3333333433222211      235


Q ss_pred             EEEECCCCCCcccccceeeeeeeeeeeecCCc--eEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC-CCCEEE
Q 021744           90 NNYRAGNSKNSNINNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLY  166 (308)
Q Consensus        90 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~  166 (308)
                      ++|++.....+....+... .+.+++-.|.-.  .+.|+.||.+.+||++....+...++.|+.+++.+-|+| ++..|+
T Consensus       162 ~a~~~~p~~t~~~~~~~~~-~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lf  240 (319)
T KOG4714|consen  162 YANTLDPIKTLIPSKKALD-AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLF  240 (319)
T ss_pred             eeecccccccccccccccc-cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhee
Confidence            6677654333221222222 255555555542  378999999999999988666778889999999999998 568899


Q ss_pred             EeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEE---cCCC--cee-eeeCCCCCEEEEEEeCC
Q 021744          167 SGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWN---TQTN--TDL-SLSGPVGQVYAMAVGND  240 (308)
Q Consensus       167 s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd---~~~~--~~~-~~~~~~~~v~~~~~~~~  240 (308)
                      ++++||.+.-||..+ ..+. +....                 ..+..|=   .-..  +.. .+..-.-.|+++.+..+
T Consensus       241 t~sedGslw~wdas~-~~l~-i~~~~-----------------s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~  301 (319)
T KOG4714|consen  241 TCSEDGSLWHWDAST-TFLS-ISNQA-----------------SVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGP  301 (319)
T ss_pred             EecCCCcEEEEcCCC-ceEE-ecCcc-----------------ccccccccCCcccceEeeeccccccceeeeeeeccCc
Confidence            999999999999775 2222 11111                 1122220   0000  000 12223346777877777


Q ss_pred             EEEEEcCCCeEEEEE
Q 021744          241 LLFAGTQDGAILAWK  255 (308)
Q Consensus       241 ~l~~g~~dg~i~iwd  255 (308)
                      .|++|+.-+.|++++
T Consensus       302 ~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  302 CLVCGTDAEAIYLTR  316 (319)
T ss_pred             eEEeccccceEEEec
Confidence            899999988888875

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.02  E-value=4.7e-08  Score=86.50  Aligned_cols=266  Identities=7%  Similarity=0.038  Sum_probs=174.1

Q ss_pred             CCceEEecCCCeEEEeecCCC----CCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCC
Q 021744           26 GGLSTADTRQKVCNYWRAGKC----NRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSK   98 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~----~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~   98 (308)
                      .++||+|+.||.++|-..++.    ++.+ ..-.........+.||...  .+.|+..... -|...+|-|.||-+-.++
T Consensus        26 ~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgs  104 (1189)
T KOG2041|consen   26 SGYIACGGADGLLKVLKLGTDTTDLNKSG-LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGS  104 (1189)
T ss_pred             CCeEEeccccceeEEEEccccCCcccccc-cccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeeccc
Confidence            468999999999999876543    1122 1111223445677899998  6777777666 777899999999997776


Q ss_pred             Ccccccce-eeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEE
Q 021744           99 NSNINNRA-VIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRV  176 (308)
Q Consensus        99 ~~~~~~~~-~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~  176 (308)
                      ....-... .+..|.+++|..+|.. ...-+||.|.+=.+...+-.-+.+++.  -...+.|++|.+.++.+-..|.+.+
T Consensus       105 W~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws~D~~~~Lf~~ange~hl  182 (1189)
T KOG2041|consen  105 WCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWSEDLEQALFKKANGETHL  182 (1189)
T ss_pred             HHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh--eccceeecccHHHHHhhhcCCcEEE
Confidence            54333322 3334788888888865 556677877776665542111233332  2347889999999988889999999


Q ss_pred             EeCCCC-------eEEEEEe-----CCCeeEEE----------EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEE
Q 021744          177 WDCASG-------QCAGVIN-----LGGEVGCM----------ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVY  233 (308)
Q Consensus       177 wd~~~~-------~~~~~~~-----~~~~v~~~----------~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~  233 (308)
                      +|.+..       .+.....     .+..+..+          -|+...++++. +|.+.+..-...+...+......+.
T Consensus       183 ydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~v  262 (1189)
T KOG2041|consen  183 YDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIV  262 (1189)
T ss_pred             ecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEee
Confidence            997642       1111111     11112211          14566788887 7788877555444332222346788


Q ss_pred             EEEEeCC--EEEEEcCCC---------eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEEEee
Q 021744          234 AMAVGND--LLFAGTQDG---------AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMFIGQ  299 (308)
Q Consensus       234 ~~~~~~~--~l~~g~~dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~~~  299 (308)
                      .+.|+++  .|+.++.+.         .|.+|..-.     +.+.+++.....|+. +|-..|-.++.+.+..||+..
T Consensus       263 gakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G-----~i~gtlkvpg~~It~lsWEg~gLriA~Avdsfiyfan  335 (1189)
T KOG2041|consen  263 GAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG-----HIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFAN  335 (1189)
T ss_pred             cceecCCCcEEEEccCcccccCccccceEEEeccch-----hheEEEecCCceeeeeEEcCCceEEEEEecceEEEEe
Confidence            9999999  777777542         455554332     677888888888998 998888888877777777654

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.99  E-value=1.8e-07  Score=73.65  Aligned_cols=207  Identities=7%  Similarity=-0.036  Sum_probs=131.7

Q ss_pred             eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC--ceEEeeCCCeEEEEEcCCCceeeeEeeCccc--ceEEE
Q 021744           81 RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK--VVSGI  156 (308)
Q Consensus        81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~--~v~~~  156 (308)
                      |.|+..|...+|...+.+.....-..+...+..+.-..+.  ....++.|.++++.++.-+. ...  .-|..  .+.++
T Consensus        88 a~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s-~~~--~~h~~~~~~ns~  164 (344)
T KOG4532|consen   88 ADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS-NKF--AVHNQNLTQNSL  164 (344)
T ss_pred             EeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc-ccc--eeeccccceeee
Confidence            8888999999999976654322212222222222222222  23557778888888876552 111  12333  37899


Q ss_pred             EEeCCCCEEEEeeCCCcEEEEeCCCC-eEEEEEe-----CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee------
Q 021744          157 TLPSGSDKLYSGSKDETVRVWDCASG-QCAGVIN-----LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL------  223 (308)
Q Consensus       157 ~~~~~~~~l~s~s~dg~v~~wd~~~~-~~~~~~~-----~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~------  223 (308)
                      +++++++++++.+....|..|.+... +.+..+.     ..+-..++......+|++. ||++.+||++.....      
T Consensus       165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss  244 (344)
T KOG4532|consen  165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS  244 (344)
T ss_pred             EEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc
Confidence            99999999999999999999988753 3333222     2223344455666777776 999999999975322      


Q ss_pred             eeeCCCCCEEEEEEeCC----EEEEEcCCCeEEEEEcCCCCcccccceec----cccC-CCeEE-EEecCCCeEEEee
Q 021744          224 SLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVTTNCFEPAASL----KVHT-DSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       224 ~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~~~~~~~~~~~----~~~~-~~v~~-~~s~d~~~l~~s~  291 (308)
                      +...|.+.++.+.|++.    +|+..-.-+.+.+.|+++... .+.+...    ..|. ..+.. .|+.++.-..++.
T Consensus       245 trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~-~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~  321 (344)
T KOG4532|consen  245 TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN-HQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN  321 (344)
T ss_pred             cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce-eeEEecCccccccccccccccccccCCCccccccc
Confidence            34568899999999964    666666678999999998753 1111111    1222 33666 8888777665544

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.99  E-value=5.8e-08  Score=77.17  Aligned_cols=209  Identities=11%  Similarity=0.096  Sum_probs=134.5

Q ss_pred             eeccCCCcEEEEECCCCCCccc--ccceeee---eeeeeeeecCCce-EEeeCCCeEEEEEcCCC-ceeeeEeeCcccce
Q 021744           81 RNNNFNNHSNNYRAGNSKNSNI--NNRAVIK---TDILCRNWVQGNC-MYGEKCKFLHSWTVGDG-FKLLTQLEGHQKVV  153 (308)
Q Consensus        81 ~s~~~d~~i~vwd~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~-~~~~~~~~~h~~~v  153 (308)
                      +-+-.+|.|.++...-......  .+...+-   ...+..+++.+.. +++..+|.+.+-+.... -+..+.++.|+-+.
T Consensus        89 ~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~  168 (339)
T KOG0280|consen   89 LDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEA  168 (339)
T ss_pred             eeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceee
Confidence            6677788899987743221111  1111111   1334556666644 66777888885554433 13345788999999


Q ss_pred             EEEEEeC-CCCEEEEeeCCCcEEEEeCC-CCeEEEEE-e-CCCeeEEEE---cCCCEEEEEc-CCcEEEEEcCC-Cceee
Q 021744          154 SGITLPS-GSDKLYSGSKDETVRVWDCA-SGQCAGVI-N-LGGEVGCMI---SEGPWIFIGV-TNFVKAWNTQT-NTDLS  224 (308)
Q Consensus       154 ~~~~~~~-~~~~l~s~s~dg~v~~wd~~-~~~~~~~~-~-~~~~v~~~~---~~~~~l~~~~-d~~i~~wd~~~-~~~~~  224 (308)
                      +...|+. +.+.+.+|+.|+.+..||++ .++.+..- + |..-+.++.   +.+.++++|+ |..|++||.|. ++++.
T Consensus       169 Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~  248 (339)
T KOG0280|consen  169 WTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF  248 (339)
T ss_pred             eeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc
Confidence            9999975 44788999999999999999 44555442 2 566666663   3467899998 99999999995 45553


Q ss_pred             eeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccc-cceeccccCCCeEE-EEecCCCeEEE
Q 021744          225 LSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFE-PAASLKVHTDSNRA-HFSRDVTSLLG  289 (308)
Q Consensus       225 ~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~v~~-~~s~d~~~l~~  289 (308)
                      -..-.+.|+.+..+|.   .++.++--+-.+|-+.......++ .....+.|.+-+.. .|..-..++++
T Consensus       249 ~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lAT  318 (339)
T KOG0280|consen  249 KAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLAT  318 (339)
T ss_pred             cCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeee
Confidence            3344578999999998   445555556677888776543111 23344567666666 77444334544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.98  E-value=2.4e-06  Score=72.32  Aligned_cols=229  Identities=10%  Similarity=0.027  Sum_probs=128.7

Q ss_pred             CCCCCceEEec---------CCCeEEEeecCCCCCCCCCcccccCCCCCCcc---ccccceeEEecCCCe-eecc-C-CC
Q 021744           23 GGGGGLSTADT---------RQKVCNYWRAGKCNRFPCPYLHRELPLPPAAT---ANGAAAKRFANNTWG-RNNN-F-NN   87 (308)
Q Consensus        23 ~~~~~~~~s~s---------~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~---gh~~~~i~~s~~g~~-~s~~-~-d~   87 (308)
                      .|+..+.++.+         .+..|.+||..+..      ...+++.+...+   +-.....+++|||+. +... . +.
T Consensus        55 pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~------~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~  128 (352)
T TIGR02658        55 SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL------PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSP  128 (352)
T ss_pred             CCCCEEEEEeccccccccCCCCCEEEEEECccCc------EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCC
Confidence            44455666677         78999999999871      122233332211   111126899999998 4443 4 79


Q ss_pred             cEEEEECCCCCCcccccceeee------eeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEE-EEE
Q 021744           88 HSNNYRAGNSKNSNINNRAVIK------TDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSG-ITL  158 (308)
Q Consensus        88 ~i~vwd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~-~~~  158 (308)
                      .|-+.|+.+++.+.+....-..      .......+.++..  ++-..+|....       .....+.+-..++.. -.|
T Consensus       129 ~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~-------~~~~vf~~~~~~v~~rP~~  201 (352)
T TIGR02658       129 AVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI-------KPTEVFHPEDEYLINHPAY  201 (352)
T ss_pred             EEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEE-------eeeeeecCCccccccCCce
Confidence            9999999888765422211000      0111222333322  22222333211       001111110011000 034


Q ss_pred             eC-CCCEEEEeeCCCcEEEEeCCC-----CeEEEEEeCCC----------eeEEEEcCCCEEEEEc-----------CCc
Q 021744          159 PS-GSDKLYSGSKDETVRVWDCAS-----GQCAGVINLGG----------EVGCMISEGPWIFIGV-----------TNF  211 (308)
Q Consensus       159 ~~-~~~~l~s~s~dg~v~~wd~~~-----~~~~~~~~~~~----------~v~~~~~~~~~l~~~~-----------d~~  211 (308)
                      .+ ++.++....+ |+|.+-|+..     .+....+....          +...+.++++.+++..           .+.
T Consensus       202 ~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~  280 (352)
T TIGR02658       202 SNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF  280 (352)
T ss_pred             EcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE
Confidence            55 7777666555 9999999654     33333322111          1244567888777631           258


Q ss_pred             EEEEEcCCCceeeeeCCCCCEEEEEEeCC---EEEEEc-CCCeEEEEEcCCCCcccccceec
Q 021744          212 VKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGT-QDGAILAWKFNVTTNCFEPAASL  269 (308)
Q Consensus       212 i~~wd~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~  269 (308)
                      |.++|..+++.+....-...+..++++||   +|++.. .++.|.++|..+.    +.+.++
T Consensus       281 V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~----k~i~~i  338 (352)
T TIGR02658       281 LFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG----KELSSV  338 (352)
T ss_pred             EEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC----eEEeee
Confidence            99999999998843333558999999998   444444 6788999999987    666666

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.98  E-value=2.3e-06  Score=70.27  Aligned_cols=218  Identities=11%  Similarity=0.115  Sum_probs=139.6

Q ss_pred             CCcEEEEECCC--CCCcccccceeeeeeeeeeeecCCceE-Ee---eCCCeEEEEEcCC--Cc-eeeeEeeCcccceEEE
Q 021744           86 NNHSNNYRAGN--SKNSNINNRAVIKTDILCRNWVQGNCM-YG---EKCKFLHSWTVGD--GF-KLLTQLEGHQKVVSGI  156 (308)
Q Consensus        86 d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g---~~d~~i~iwd~~~--~~-~~~~~~~~h~~~v~~~  156 (308)
                      ++-|.+|++++  ++............+..+.+.++.+++ ++   +.+|.|-.|.+..  +. ..+........+...+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            56699999963  333222333444558889999998652 22   2367777777664  42 1111111122344889


Q ss_pred             EEeCCCCEEEEeeC-CCcEEEEeCCC-Ce---EEEEEeCCCe------------eEEEEcCCCEEEEEc--CCcEEEEEc
Q 021744          157 TLPSGSDKLYSGSK-DETVRVWDCAS-GQ---CAGVINLGGE------------VGCMISEGPWIFIGV--TNFVKAWNT  217 (308)
Q Consensus       157 ~~~~~~~~l~s~s~-dg~v~~wd~~~-~~---~~~~~~~~~~------------v~~~~~~~~~l~~~~--d~~i~~wd~  217 (308)
                      ++++++++++++.. -|.|.++-++. |.   .+..++|.+.            ...+.|++++|++..  -..|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            99999999988876 46899998865 33   2333443322            123358899999876  558999999


Q ss_pred             CCCceee----eeCCCCCEEEEEEeCC--E-EEEEcCCCeEEEEEcCCCCcccccceecc----c--cCCCeEE-EEecC
Q 021744          218 QTNTDLS----LSGPVGQVYAMAVGND--L-LFAGTQDGAILAWKFNVTTNCFEPAASLK----V--HTDSNRA-HFSRD  283 (308)
Q Consensus       218 ~~~~~~~----~~~~~~~v~~~~~~~~--~-l~~g~~dg~i~iwd~~~~~~~~~~~~~~~----~--~~~~v~~-~~s~d  283 (308)
                      ..+.+..    ........+-|.|+|+  + .+..=.+++|.+|........++.++.+.    .  ....... ..++|
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d  254 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD  254 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence            9776541    1133456788999999  3 33455689999999988533234444432    1  1234445 88999


Q ss_pred             CCeEEEee----ceEEEEeecCce
Q 021744          284 VTSLLGSV----SFIMFIGQNNKG  303 (308)
Q Consensus       284 ~~~l~~s~----s~~i~~~~~~~~  303 (308)
                      |++|.+|-    ++.+|-...+.+
T Consensus       255 GrFLYasNRg~dsI~~f~V~~~~g  278 (346)
T COG2706         255 GRFLYASNRGHDSIAVFSVDPDGG  278 (346)
T ss_pred             CCEEEEecCCCCeEEEEEEcCCCC
Confidence            99999987    677777666654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=7e-08  Score=84.56  Aligned_cols=183  Identities=11%  Similarity=0.011  Sum_probs=111.7

Q ss_pred             eeEEecCCCe--eeccC---CCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEee--CCCeEEEEEcCCCce
Q 021744           71 AKRFANNTWG--RNNNF---NNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGE--KCKFLHSWTVGDGFK  141 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~--~d~~i~iwd~~~~~~  141 (308)
                      ...|+|||+.  +..+.   +..|.++|+.+++...  ............|+|+|..  ++.+  .+..|.++|+.++ +
T Consensus       192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g-~  268 (419)
T PRK04043        192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK-T  268 (419)
T ss_pred             eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC-c
Confidence            5699999983  33233   3468888987775432  1112233445678999954  2333  2457888888777 3


Q ss_pred             eeeEeeCcccceEEEEEeCCCCEEEEeeC-CC--cEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEE-c-C-------
Q 021744          142 LLTQLEGHQKVVSGITLPSGSDKLYSGSK-DE--TVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIG-V-T-------  209 (308)
Q Consensus       142 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg--~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~-~-d-------  209 (308)
                       ...+..+........|+|||+.|+-.+. .+  .|.+.|+.+++..+..........++|+++.|+.. . .       
T Consensus       269 -~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~  347 (419)
T PRK04043        269 -LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFGKN  347 (419)
T ss_pred             -EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccCCC
Confidence             3444444443456689999988765553 33  67888888877644333222233667899988743 2 2       


Q ss_pred             -CcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEc-CCC--eEEEEEcCC
Q 021744          210 -NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT-QDG--AILAWKFNV  258 (308)
Q Consensus       210 -~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~-~dg--~i~iwd~~~  258 (308)
                       ..|.+.|+.+++...+.... ......|+||  .++..+ ..+  .+.+.++..
T Consensus       348 ~~~I~v~d~~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        348 TFNLYLISTNSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CcEEEEEECCCCCeEECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence             26888899988777555432 3335889999  333333 223  366667665

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=4.8e-07  Score=77.95  Aligned_cols=210  Identities=11%  Similarity=0.080  Sum_probs=137.6

Q ss_pred             eeEEecCCCeeeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCc--eE------EeeCCCeEEEEEcCCCc--
Q 021744           71 AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGN--CM------YGEKCKFLHSWTVGDGF--  140 (308)
Q Consensus        71 ~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~g~~d~~i~iwd~~~~~--  140 (308)
                      +..|++|..++.--..+.+.+|++...+.+  ...-+...+....++|.+.  .+      .++.-..++||......  
T Consensus       130 ~~qfs~dEsl~arlv~nev~f~~~~~f~~~--~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~  207 (566)
T KOG2315|consen  130 VPQFSIDESLAARLVSNEVQFYDLGSFKTI--QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH  207 (566)
T ss_pred             ccccccchhhhhhhhcceEEEEecCCccce--eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc
Confidence            788888888744445667999999764433  3333444566677777642  11      25667889999876321  


Q ss_pred             ee--eeEeeCcccceEEEEEeCCCCE-E--EEeeCCC---------cEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEE
Q 021744          141 KL--LTQLEGHQKVVSGITLPSGSDK-L--YSGSKDE---------TVRVWDCASGQCAGVINLGGEVGCM--ISEGPWI  204 (308)
Q Consensus       141 ~~--~~~~~~h~~~v~~~~~~~~~~~-l--~s~s~dg---------~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l  204 (308)
                      +.  .++|.  ...=..+.|++-+.- |  ++..-|.         ++++.+++...++..+...++|-++  .++++.+
T Consensus       208 ~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF  285 (566)
T KOG2315|consen  208 QPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREF  285 (566)
T ss_pred             chhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEE
Confidence            11  11221  223346788876643 2  2333333         6888888866677677778888877  3677766


Q ss_pred             EE--Ec-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEc---CCCeEEEEEcCCCCcccccceeccccCCCe
Q 021744          205 FI--GV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT---QDGAILAWKFNVTTNCFEPAASLKVHTDSN  276 (308)
Q Consensus       205 ~~--~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v  276 (308)
                      ++  |. --.+.+||++......+  .+++-+++-|+|.  +++.++   ..|.|.+||+.+.    +++..+.. ....
T Consensus       286 ~VvyGfMPAkvtifnlr~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~----K~i~~~~a-~~tt  358 (566)
T KOG2315|consen  286 AVVYGFMPAKVTIFNLRGKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR----KLIAKFKA-ANTT  358 (566)
T ss_pred             EEEEecccceEEEEcCCCCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch----hhcccccc-CCce
Confidence            65  44 56899999987655544  3556788999998  555444   3578999999995    66776664 3344


Q ss_pred             EEEEecCCCeEEEee
Q 021744          277 RAHFSRDVTSLLGSV  291 (308)
Q Consensus       277 ~~~~s~d~~~l~~s~  291 (308)
                      .+.|+|||++++++.
T Consensus       359 ~~eW~PdGe~flTAT  373 (566)
T KOG2315|consen  359 VFEWSPDGEYFLTAT  373 (566)
T ss_pred             EEEEcCCCcEEEEEe
Confidence            459999999999655

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.95  E-value=7.1e-06  Score=67.43  Aligned_cols=228  Identities=11%  Similarity=0.105  Sum_probs=143.2

Q ss_pred             eeEEecCCCe-eecc-C--CCcEEEEECCC--CCCcccccceeee-eeeeeeeecCCceE-Ee-eCCCeEEEEEcCC-Cc
Q 021744           71 AKRFANNTWG-RNNN-F--NNHSNNYRAGN--SKNSNINNRAVIK-TDILCRNWVQGNCM-YG-EKCKFLHSWTVGD-GF  140 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~-~--d~~i~vwd~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~g-~~d~~i~iwd~~~-~~  140 (308)
                      -++++|++++ .++. .  ++.|-.|.++.  |............ ....++..++++++ ++ -..|.|.++-++. +.
T Consensus        44 yl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~  123 (346)
T COG2706          44 YLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGS  123 (346)
T ss_pred             eEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCc
Confidence            4899999987 3333 3  57788887754  4332222222222 24677888888773 33 3568899998865 31


Q ss_pred             --eeeeEeeCcccc----------eEEEEEeCCCCEEEEeeC-CCcEEEEeCCCCeEEEEEe------CCCeeEEEEcCC
Q 021744          141 --KLLTQLEGHQKV----------VSGITLPSGSDKLYSGSK-DETVRVWDCASGQCAGVIN------LGGEVGCMISEG  201 (308)
Q Consensus       141 --~~~~~~~~h~~~----------v~~~~~~~~~~~l~s~s~-dg~v~~wd~~~~~~~~~~~------~~~~v~~~~~~~  201 (308)
                        ..+..+ .|.+.          +....+.|++++|+++.. --.|.+|++..++....-.      ...+-..+.|++
T Consensus       124 l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~  202 (346)
T COG2706         124 LQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNG  202 (346)
T ss_pred             cccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCC
Confidence              112222 35554          888999999999988754 2369999999765443222      122333456888


Q ss_pred             CEEEE-Ec-CCcEEEEEcCCC--ceeeeeC---------CCCCEEEEEEeCC--EEEEEc-CCCeEEEEEcCCCCccccc
Q 021744          202 PWIFI-GV-TNFVKAWNTQTN--TDLSLSG---------PVGQVYAMAVGND--LLFAGT-QDGAILAWKFNVTTNCFEP  265 (308)
Q Consensus       202 ~~l~~-~~-d~~i~~wd~~~~--~~~~~~~---------~~~~v~~~~~~~~--~l~~g~-~dg~i~iwd~~~~~~~~~~  265 (308)
                      ++..+ +. +++|-+|.....  +...+..         .....-.|.++++  +|.++. ....|.+|.+......+..
T Consensus       203 k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~  282 (346)
T COG2706         203 KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLEL  282 (346)
T ss_pred             cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEE
Confidence            88774 44 999999988773  2222211         2346778889999  443332 2447888888765432344


Q ss_pred             ceeccccCCCeEE-EEecCCCeEEEee----ceEEEEee
Q 021744          266 AASLKVHTDSNRA-HFSRDVTSLLGSV----SFIMFIGQ  299 (308)
Q Consensus       266 ~~~~~~~~~~v~~-~~s~d~~~l~~s~----s~~i~~~~  299 (308)
                      +.....+....+. .|++++++|+++.    .+.+|-..
T Consensus       283 ~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         283 VGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             EEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence            4555566666777 9999999999887    44555444

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.95  E-value=5.2e-08  Score=79.08  Aligned_cols=197  Identities=12%  Similarity=0.139  Sum_probs=130.5

Q ss_pred             eeeeeeecCCce-EEeeCCCeEEEEEcCCCce----eeeEeeCcc------------cceEEEEEeCCC--CEEEEeeCC
Q 021744          111 DILCRNWVQGNC-MYGEKCKFLHSWTVGDGFK----LLTQLEGHQ------------KVVSGITLPSGS--DKLYSGSKD  171 (308)
Q Consensus       111 ~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~----~~~~~~~h~------------~~v~~~~~~~~~--~~l~s~s~d  171 (308)
                      +.++.|...|.. ++|..+|.|.++.-....+    ....++.|.            ..|..+.|.+++  ..++....|
T Consensus        28 is~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNd  107 (433)
T KOG1354|consen   28 ISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTND  107 (433)
T ss_pred             eeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCC
Confidence            677889889976 8999999999997654322    233444443            568889998765  457788899


Q ss_pred             CcEEEEeCCCCeEEE-----------------------------------EEe--CCCeeEEEE--cCCCEEEEEcCCcE
Q 021744          172 ETVRVWDCASGQCAG-----------------------------------VIN--LGGEVGCMI--SEGPWIFIGVTNFV  212 (308)
Q Consensus       172 g~v~~wd~~~~~~~~-----------------------------------~~~--~~~~v~~~~--~~~~~l~~~~d~~i  212 (308)
                      ++|++|-+.......                                   .+.  |...+.+++  +|.+.++++.|=.|
T Consensus       108 ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRI  187 (433)
T KOG1354|consen  108 KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRI  187 (433)
T ss_pred             cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceee
Confidence            999999775421111                                   011  223344443  56778888888899


Q ss_pred             EEEEcCCC-c---eeeeeCCC-----CCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceecccc--------
Q 021744          213 KAWNTQTN-T---DLSLSGPV-----GQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH--------  272 (308)
Q Consensus       213 ~~wd~~~~-~---~~~~~~~~-----~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~--------  272 (308)
                      .+|++.-- +   .+.++.+.     .-|++..|+|.   .|+-.+..|+|++-|++....+....+.+...        
T Consensus       188 NLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsf  267 (433)
T KOG1354|consen  188 NLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSF  267 (433)
T ss_pred             eeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhh
Confidence            99998632 2   22334333     36889999998   78888899999999999543322222222211        


Q ss_pred             ----CCCeEE-EEecCCCeEEEee--ceEEEEe-ecCceeEEe
Q 021744          273 ----TDSNRA-HFSRDVTSLLGSV--SFIMFIG-QNNKGVVCY  307 (308)
Q Consensus       273 ----~~~v~~-~~s~d~~~l~~s~--s~~i~~~-~~~~~~~~~  307 (308)
                          -..|+. .|++.|+|+++--  ++.+|.. .+++-+..|
T Consensus       268 fseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~  310 (433)
T KOG1354|consen  268 FSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETY  310 (433)
T ss_pred             HHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEE
Confidence                124666 8999999999754  7788876 344444433

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.93  E-value=8.7e-09  Score=83.52  Aligned_cols=141  Identities=13%  Similarity=0.196  Sum_probs=107.6

Q ss_pred             EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC-----CeEEEEEeCCCeeEEE
Q 021744          123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-----GQCAGVINLGGEVGCM  197 (308)
Q Consensus       123 ~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~-----~~~~~~~~~~~~v~~~  197 (308)
                      ++.+.+..|-+-+++++.  .+.|. .++.|.++.|...++++..|...|.|...|++.     +.+...+.|+..++++
T Consensus       228 fs~G~sqqv~L~nvetg~--~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGH--QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeeccc--ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhh
Confidence            456667788888998883  22333 678899999998899999999999999999986     4677778899999987


Q ss_pred             E---cCCCEEEEEc-CCcEEEEEcCCCce---e-eeeCCCCCEEEEE--EeCC--EEEEEcCCCeEEEEEcCCCCccccc
Q 021744          198 I---SEGPWIFIGV-TNFVKAWNTQTNTD---L-SLSGPVGQVYAMA--VGND--LLFAGTQDGAILAWKFNVTTNCFEP  265 (308)
Q Consensus       198 ~---~~~~~l~~~~-d~~i~~wd~~~~~~---~-~~~~~~~~v~~~~--~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~  265 (308)
                      -   .++++|.+++ +|+|++||++--++   + ...+|...-.-+-  +.+.  .++++++|-..+||.++.+    .+
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g----hL  380 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG----HL  380 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC----ce
Confidence            2   3566666555 99999999997665   3 6667765333232  3344  8888999999999999987    66


Q ss_pred             ceecc
Q 021744          266 AASLK  270 (308)
Q Consensus       266 ~~~~~  270 (308)
                      +.++.
T Consensus       381 l~tip  385 (425)
T KOG2695|consen  381 LCTIP  385 (425)
T ss_pred             eeccC
Confidence            66655

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.92  E-value=1.3e-07  Score=75.14  Aligned_cols=188  Identities=14%  Similarity=0.036  Sum_probs=123.1

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCC-cccccceeeeeeeeeeeecCC-ce-EEeeCCCeEEEEEcCCCceeeeE-
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKN-SNINNRAVIKTDILCRNWVQG-NC-MYGEKCKFLHSWTVGDGFKLLTQ-  145 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~d~~i~iwd~~~~~~~~~~-  145 (308)
                      ++.|++.+.. +++-.+|.+.+-+...... ..+..+.|+.....+.|+... +. .+|+.|+.+.-||++...+.+.. 
T Consensus       126 slD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n  205 (339)
T KOG0280|consen  126 SLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN  205 (339)
T ss_pred             EEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec
Confidence            7888998888 8888889888554433322 223567888888888887655 33 88999999999999944344433 


Q ss_pred             eeCcccceEEEEEeC-CCCEEEEeeCCCcEEEEeCCC-CeEEEEEeCCCeeEEEE--c--CCCEEEEEcCCcEEEEEcCC
Q 021744          146 LEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCAS-GQCAGVINLGGEVGCMI--S--EGPWIFIGVTNFVKAWNTQT  219 (308)
Q Consensus       146 ~~~h~~~v~~~~~~~-~~~~l~s~s~dg~v~~wd~~~-~~~~~~~~~~~~v~~~~--~--~~~~l~~~~d~~i~~wd~~~  219 (308)
                      .+-|...|.++.-+| .+.++++|++|-.|++||.++ ++++..-+..+-+..+.  |  .+++|+++.-+-.++-+...
T Consensus       206 ~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~  285 (339)
T KOG0280|consen  206 SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSD  285 (339)
T ss_pred             ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecc
Confidence            567899999998775 678999999999999999994 77776666555555442  2  13344455444445555443


Q ss_pred             C--c---ee-eeeCCCCCEEEEEEeCC--EEEEEcC-CCeEE-EEEcCC
Q 021744          220 N--T---DL-SLSGPVGQVYAMAVGND--LLFAGTQ-DGAIL-AWKFNV  258 (308)
Q Consensus       220 ~--~---~~-~~~~~~~~v~~~~~~~~--~l~~g~~-dg~i~-iwd~~~  258 (308)
                      +  +   .. ..+.|.+-++.-.|...  .|++++. |+.++ +|-.-+
T Consensus       286 ~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  286 KVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT  334 (339)
T ss_pred             cccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence            3  2   11 34455554555555222  6787653 55544 664443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.92  E-value=2e-06  Score=73.89  Aligned_cols=189  Identities=11%  Similarity=0.112  Sum_probs=118.5

Q ss_pred             eeEEecCCCe-eecc-CCCcEEEEECCCC-CCcccc-cce-----------eeeeeeeeeeecCCce--EEeeCCCeEEE
Q 021744           71 AKRFANNTWG-RNNN-FNNHSNNYRAGNS-KNSNIN-NRA-----------VIKTDILCRNWVQGNC--MYGEKCKFLHS  133 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~-~d~~i~vwd~~~~-~~~~~~-~~~-----------~~~~~~~~~~~~~~~~--~~g~~d~~i~i  133 (308)
                      .++++|++++ +++. .+++|.+++++.. ...... ...           .......+.+.|++..  +..-....|++
T Consensus        91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~  170 (345)
T PF10282_consen   91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYV  170 (345)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred             EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEE
Confidence            6899999999 5555 5899999999753 222111 111           1112567889999976  33445568999


Q ss_pred             EEcCCCc-ee--eeEee-CcccceEEEEEeCCCCEEE-EeeCCCcEEEEeCC--CCe--EEEEEe-C----C-C-eeE--
Q 021744          134 WTVGDGF-KL--LTQLE-GHQKVVSGITLPSGSDKLY-SGSKDETVRVWDCA--SGQ--CAGVIN-L----G-G-EVG--  195 (308)
Q Consensus       134 wd~~~~~-~~--~~~~~-~h~~~v~~~~~~~~~~~l~-s~s~dg~v~~wd~~--~~~--~~~~~~-~----~-~-~v~--  195 (308)
                      |++.... ++  ...+. ......+.++|+|++++++ ..-.+++|.++++.  +++  .++.+. .    . . ...  
T Consensus       171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  250 (345)
T PF10282_consen  171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI  250 (345)
T ss_dssp             EEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred             EEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence            9987652 12  12222 2345678999999998875 44567889999988  443  233333 1    1 1 122  


Q ss_pred             EEEcCCCEEEEEc--CCcEEEEEcC--CCcee---eeeCCCCCEEEEEEeCC--EEE-EEcCCCeEEEEEcCCC
Q 021744          196 CMISEGPWIFIGV--TNFVKAWNTQ--TNTDL---SLSGPVGQVYAMAVGND--LLF-AGTQDGAILAWKFNVT  259 (308)
Q Consensus       196 ~~~~~~~~l~~~~--d~~i~~wd~~--~~~~~---~~~~~~~~v~~~~~~~~--~l~-~g~~dg~i~iwd~~~~  259 (308)
                      .+++++++|+++.  .+.|.+|++.  ++++.   .+.......+.++++|+  +|+ +.-.++.|.+|++...
T Consensus       251 ~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~  324 (345)
T PF10282_consen  251 AISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPD  324 (345)
T ss_dssp             EE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred             EEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence            3468999999765  7799999994  34443   23333445899999999  555 4456789999988643

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.91  E-value=7.2e-09  Score=58.39  Aligned_cols=38  Identities=37%  Similarity=0.663  Sum_probs=36.3

Q ss_pred             eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 021744          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (308)
Q Consensus       141 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd  178 (308)
                      +++.++++|++.|.+++|+|++.+|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.89  E-value=9.1e-07  Score=75.03  Aligned_cols=207  Identities=10%  Similarity=0.036  Sum_probs=138.9

Q ss_pred             EecCCCeeeccCCCcEEEEECCCCCCcccccc--ee---eee--eeeee----eec-CCceEEeeCCCeEEEEEcCCCce
Q 021744           74 FANNTWGRNNNFNNHSNNYRAGNSKNSNINNR--AV---IKT--DILCR----NWV-QGNCMYGEKCKFLHSWTVGDGFK  141 (308)
Q Consensus        74 ~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~--~~---~~~--~~~~~----~~~-~~~~~~g~~d~~i~iwd~~~~~~  141 (308)
                      .+.||+.+.-+..|.|.++|.++.........  ..   +..  +....    |++ +|..++--+-|...|.+...+ .
T Consensus       274 ~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~-~  352 (668)
T COG4946         274 ANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDG-Y  352 (668)
T ss_pred             cCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCC-e
Confidence            35677765556667799999866543221111  11   111  11111    222 344433344567777766655 2


Q ss_pred             eeeEeeCcccceEEEEEeCCCCEEEEeeCCC-cEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEEEEcC-CcEEEEEc
Q 021744          142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDE-TVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGVT-NFVKAWNT  217 (308)
Q Consensus       142 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg-~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~d-~~i~~wd~  217 (308)
                      .++  -+|...|.-..+..+++-++.|..|| .+-++|.++++.......-+.+.++  .++|++++++.+ ..|.+.|+
T Consensus       353 ~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidi  430 (668)
T COG4946         353 SIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDI  430 (668)
T ss_pred             eEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEe
Confidence            332  35778899999988888999999999 8999999998877666655666655  688999998885 49999999


Q ss_pred             CCCceeee-eCCCCCEEEEEEeCC--EEEEEcCCC----eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE
Q 021744          218 QTNTDLSL-SGPVGQVYAMAVGND--LLFAGTQDG----AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL  288 (308)
Q Consensus       218 ~~~~~~~~-~~~~~~v~~~~~~~~--~l~~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~  288 (308)
                      .++....+ +...+-|+.+.|+|+  ++|-+--+|    .|+++|+..+    + +........-=.+ +|.||+++|.
T Consensus       431 dngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~----K-iy~vTT~ta~DfsPaFD~d~ryLY  504 (668)
T COG4946         431 DNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG----K-IYDVTTPTAYDFSPAFDPDGRYLY  504 (668)
T ss_pred             cCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC----e-EEEecCCcccccCcccCCCCcEEE
Confidence            99988743 344567999999999  777666555    5899999985    2 2333322333344 8999999886

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.89  E-value=1.9e-08  Score=89.14  Aligned_cols=209  Identities=13%  Similarity=0.108  Sum_probs=141.7

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCC-CCcccccceeeee--eeeeeeecCC--ce-EEeeCCCeEEEEEcCCC--ce
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNS-KNSNINNRAVIKT--DILCRNWVQG--NC-MYGEKCKFLHSWTVGDG--FK  141 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~~--~~~~~~~~~~--~~-~~g~~d~~i~iwd~~~~--~~  141 (308)
                      ++.++|.|.- |.++.-| +.+-|+... .+.  ....|..+  +-...+++..  .+ +.......-.+|++...  ..
T Consensus        29 a~si~p~grdi~lAsr~g-l~i~dld~p~~pp--r~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~a  105 (1081)
T KOG0309|consen   29 AVSINPSGRDIVLASRQG-LYIIDLDDPFTPP--RWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNA  105 (1081)
T ss_pred             ceeeccccchhhhhhhcC-eEEEeccCCCCCc--eeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccc
Confidence            5889999998 8888877 667777543 221  11112221  4445555554  22 44444555567887532  24


Q ss_pred             eeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCC-eEEEEEe--CCCeeEEE--EcCCCEEEEEcCCcEEEE
Q 021744          142 LLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASG-QCAGVIN--LGGEVGCM--ISEGPWIFIGVTNFVKAW  215 (308)
Q Consensus       142 ~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~-~~~~~~~--~~~~v~~~--~~~~~~l~~~~d~~i~~w  215 (308)
                      +...+.+|...|+.+.|+|.. ..+++++.|-.|..||+++- .++..+.  +......-  ..++..++++..+.|.+|
T Consensus       106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vw  185 (1081)
T KOG0309|consen  106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVW  185 (1081)
T ss_pred             eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEE
Confidence            455677999999999999865 56899999999999999974 4444443  22222222  356677777778899999


Q ss_pred             EcCCCcee--eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCC
Q 021744          216 NTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVT  285 (308)
Q Consensus       216 d~~~~~~~--~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~  285 (308)
                      |++.+...  .+++|...|+.++|..-   .+.+++.||+|++||......  +. .....-..++.- +|-|-|+
T Consensus       186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e~-~~~vtt~~piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--ES-KRTVTTNFPIWRGRYLPFGE  258 (1081)
T ss_pred             eccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--cc-ceeccccCcceeccccccCc
Confidence            99987543  78889999999999876   889999999999999886532  22 222233456666 7777554

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.84  E-value=5.5e-08  Score=80.38  Aligned_cols=152  Identities=11%  Similarity=0.139  Sum_probs=96.8

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCccc--ccceeeeeeeeeeeecCCce-E---EeeCCCeEEEEEcCCCceee
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI--NNRAVIKTDILCRNWVQGNC-M---YGEKCKFLHSWTVGDGFKLL  143 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~---~g~~d~~i~iwd~~~~~~~~  143 (308)
                      .+.++|++.+ |.+..++...++++........  ...........+.|..+... .   ..++...+.+|.+..+  ..
T Consensus        67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~--~~  144 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG--RC  144 (390)
T ss_pred             ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc--Cc
Confidence            4677888888 8888888877777743322000  11111122333344333322 2   2344555666665543  24


Q ss_pred             eEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEEcCCCcee
Q 021744          144 TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL  223 (308)
Q Consensus       144 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~  223 (308)
                      ..+-||-..++.++|+||+++++++..|..|++-....--.+..+                                   
T Consensus       145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf-----------------------------------  189 (390)
T KOG3914|consen  145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF-----------------------------------  189 (390)
T ss_pred             chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh-----------------------------------
Confidence            456689999999999999999999999999998665432222111                                   


Q ss_pred             eeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCC
Q 021744          224 SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTT  260 (308)
Q Consensus       224 ~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~  260 (308)
                       ..+|..-|..++..++ .|++++.|++|++||+.+++
T Consensus       190 -clGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  190 -CLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             -ccccHhheeeeeeccCceeeecCCCCcEEEEecccCC
Confidence             2357777777777777 67777778888888877763

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.84  E-value=4.4e-06  Score=66.68  Aligned_cols=232  Identities=10%  Similarity=-0.035  Sum_probs=121.6

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN  104 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~  104 (308)
                      ..++..-+|..|.+=.+...      |-...-....|...+..+ .++||||+.. |.+...|+|+++|+........+.
T Consensus         9 Gk~lAi~qd~~iEiRsa~Dd------f~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p   82 (282)
T PF15492_consen    9 GKLLAILQDQCIEIRSAKDD------FSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPP   82 (282)
T ss_pred             CcEEEEEeccEEEEEeccCC------chheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCc
Confidence            34556667777777654322      000000011122223334 7999999999 999999999999996443221111


Q ss_pred             -----ceeeeeeeeeeeecCC-------ceEEeeCCCeEEEEEcCCC----ceeeeEee---CcccceEEEEEeCCCCEE
Q 021744          105 -----RAVIKTDILCRNWVQG-------NCMYGEKCKFLHSWTVGDG----FKLLTQLE---GHQKVVSGITLPSGSDKL  165 (308)
Q Consensus       105 -----~~~~~~~~~~~~~~~~-------~~~~g~~d~~i~iwd~~~~----~~~~~~~~---~h~~~v~~~~~~~~~~~l  165 (308)
                           ......+..+.|....       ..+.-..+|.++-|-+..+    .+..+++.   .+...|.++.++|..++|
T Consensus        83 ~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LL  162 (282)
T PF15492_consen   83 AMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLL  162 (282)
T ss_pred             ccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEE
Confidence                 1111224444443332       2255566777777765321    12223322   247799999999998887


Q ss_pred             EEeeCCCc-EEEEeCC-CCeEEEEEeCCCeeEEEEcCCCEEEEEcCC------cEEEEEcCCCcee-eeeCCCCCEEEEE
Q 021744          166 YSGSKDET-VRVWDCA-SGQCAGVINLGGEVGCMISEGPWIFIGVTN------FVKAWNTQTNTDL-SLSGPVGQVYAMA  236 (308)
Q Consensus       166 ~s~s~dg~-v~~wd~~-~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~------~i~~wd~~~~~~~-~~~~~~~~v~~~~  236 (308)
                      +.|+.... -..+... .|-....+-.+.      |-.+.+....++      +..+|.+-+.... ......+.|..|.
T Consensus       163 lVgG~~~~~~~~s~a~~~GLtaWRiL~~~------Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmS  236 (282)
T PF15492_consen  163 LVGGCEQNQDGMSKASSCGLTAWRILSDS------PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMS  236 (282)
T ss_pred             EEeccCCCCCccccccccCceEEEEcCCC------CcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEE
Confidence            76654332 0000000 011111111111      111111111111      1233333332222 1233467899999


Q ss_pred             EeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCC
Q 021744          237 VGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTD  274 (308)
Q Consensus       237 ~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  274 (308)
                      .|||  .||+...+|.|.+|++.+-    ++...+..++.
T Consensus       237 lSPdg~~La~ih~sG~lsLW~iPsL----~~~~~W~~~eq  272 (282)
T PF15492_consen  237 LSPDGSLLACIHFSGSLSLWEIPSL----RLQRSWKQDEQ  272 (282)
T ss_pred             ECCCCCEEEEEEcCCeEEEEecCcc----hhhcccchhhC
Confidence            9999  9999999999999999985    55555554433

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.83  E-value=1.8e-08  Score=86.63  Aligned_cols=142  Identities=19%  Similarity=0.287  Sum_probs=108.4

Q ss_pred             ecCCceEEeeCCCeEEEEEcCCCc------eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-
Q 021744          117 WVQGNCMYGEKCKFLHSWTVGDGF------KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-  189 (308)
Q Consensus       117 ~~~~~~~~g~~d~~i~iwd~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-  189 (308)
                      ...+.+++++.|++|++|.++...      .+..+++.|+.+|.++.|-.+.++++++  |+-+.+||.--++++.... 
T Consensus       745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~d  822 (1034)
T KOG4190|consen  745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMED  822 (1034)
T ss_pred             ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhc
Confidence            334466999999999999987431      3566788999999999999888888765  7889999988887766443 


Q ss_pred             -----CCCeeEEEEc-CCCEEEEE-c-CCcEEEEEcCCCcee-ee-----eCCCCCEEEEEEeCC--EEEEEcCCCeEEE
Q 021744          190 -----LGGEVGCMIS-EGPWIFIG-V-TNFVKAWNTQTNTDL-SL-----SGPVGQVYAMAVGND--LLFAGTQDGAILA  253 (308)
Q Consensus       190 -----~~~~v~~~~~-~~~~l~~~-~-d~~i~~wd~~~~~~~-~~-----~~~~~~v~~~~~~~~--~l~~g~~dg~i~i  253 (308)
                           ....+.|+-. +..+++++ + ..+|+++|.+..+.. .+     .+....+.+++..+.  .++.+-..|.|.+
T Consensus       823 apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~  902 (1034)
T KOG4190|consen  823 APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAI  902 (1034)
T ss_pred             CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEE
Confidence                 2234555533 45556665 4 789999999988755 22     244567889999887  8999999999999


Q ss_pred             EEcCCCC
Q 021744          254 WKFNVTT  260 (308)
Q Consensus       254 wd~~~~~  260 (308)
                      .|.+++.
T Consensus       903 LDaR~G~  909 (1034)
T KOG4190|consen  903 LDARNGK  909 (1034)
T ss_pred             EecCCCc
Confidence            9999983

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.81  E-value=1.5e-08  Score=89.86  Aligned_cols=195  Identities=16%  Similarity=0.238  Sum_probs=130.5

Q ss_pred             ccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecC-CceEEeeCCCeEEEEEcCC
Q 021744           64 ATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQ-GNCMYGEKCKFLHSWTVGD  138 (308)
Q Consensus        64 ~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~d~~i~iwd~~~  138 (308)
                      +.||..+  .+-|+|....  ++++.|-.+..||+.......-....-......+.++-. +..++.+..+.|++||.+.
T Consensus       110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~  189 (1081)
T KOG0309|consen  110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRK  189 (1081)
T ss_pred             EecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccC
Confidence            4577777  7888888766  999999999999997664332222222222444555443 3446667788899999998


Q ss_pred             CceeeeEeeCcccceEEEEEeC-CCCEEEEeeCCCcEEEEeCCCC--eEEEEEeCCCeeE--EEEc--CCCEEE-E-E--
Q 021744          139 GFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASG--QCAGVINLGGEVG--CMIS--EGPWIF-I-G--  207 (308)
Q Consensus       139 ~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~v~~wd~~~~--~~~~~~~~~~~v~--~~~~--~~~~l~-~-~--  207 (308)
                      +..++..+++|...|..++|+. ....+.+++.|++|++||....  +.........++.  +..|  +|.++. . |  
T Consensus       190 gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n  269 (1081)
T KOG0309|consen  190 GSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGN  269 (1081)
T ss_pred             CCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCe
Confidence            8788999999999999999985 3467899999999999998753  3333333333332  1222  222222 1 1  


Q ss_pred             ------cCCcEEEEEcCCC-cee-eeeCCCCCEEEEEEe-----------CC-EEEEEcCCCeEEEEEcCC
Q 021744          208 ------VTNFVKAWNTQTN-TDL-SLSGPVGQVYAMAVG-----------ND-LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       208 ------~d~~i~~wd~~~~-~~~-~~~~~~~~v~~~~~~-----------~~-~l~~g~~dg~i~iwd~~~  258 (308)
                            .++....|+..++ +++ ++.+|.+.|....|-           .+ .|++=+.|..+++|-+.+
T Consensus       270 ~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  270 MVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             eeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence                  1333334444443 233 889999988666552           23 899999999999998754

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.81  E-value=1.1e-05  Score=70.73  Aligned_cols=225  Identities=10%  Similarity=-0.012  Sum_probs=130.0

Q ss_pred             CCceEEecCCCeEEEeecCCCCC-CCCCcccccCCCCCCcccccccee--EEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNR-FPCPYLHRELPLPPAATANGAAAK--RFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~~~~~~~~~gh~~~~i--~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      +..+...+.++.+.-+|..+++. +....-..    ...........+  ....++.. +.++.++.+..+|.++++..-
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W  144 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEK----DGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAW  144 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCc----ccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcc
Confidence            45677778888999899887732 21111100    000000000000  01112344 667788999999999887653


Q ss_pred             cccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccce-----EEEEEeCCCCEEEEeeCCCcEEE
Q 021744          102 INNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVV-----SGITLPSGSDKLYSGSKDETVRV  176 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~l~s~s~dg~v~~  176 (308)
                      .....  ..+...-...++..+.+..++.+..+|.+++ +.+..+......+     ......  +..++.++.++.+..
T Consensus       145 ~~~~~--~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG-~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~~~g~v~a  219 (394)
T PRK11138        145 QTKVA--GEALSRPVVSDGLVLVHTSNGMLQALNESDG-AVKWTVNLDVPSLTLRGESAPATA--FGGAIVGGDNGRVSA  219 (394)
T ss_pred             cccCC--CceecCCEEECCEEEEECCCCEEEEEEccCC-CEeeeecCCCCcccccCCCCCEEE--CCEEEEEcCCCEEEE
Confidence            32211  1111111122455667778899999999999 6666654321110     111111  235777788999999


Q ss_pred             EeCCCCeEEEEEeCCCe--------e-----EEEEcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCCEEE
Q 021744          177 WDCASGQCAGVINLGGE--------V-----GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLF  243 (308)
Q Consensus       177 wd~~~~~~~~~~~~~~~--------v-----~~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~  243 (308)
                      .|.++++.+.......+        .     .-+..++..++.+.++.+..+|..+++.+...... ....+....+.++
T Consensus       220 ~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~~~~~~vy  298 (394)
T PRK11138        220 VLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG-SVNDFAVDGGRIY  298 (394)
T ss_pred             EEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC-CccCcEEECCEEE
Confidence            99999988776652111        0     01123444444556999999999999877322211 1223445555777


Q ss_pred             EEcCCCeEEEEEcCCCC
Q 021744          244 AGTQDGAILAWKFNVTT  260 (308)
Q Consensus       244 ~g~~dg~i~iwd~~~~~  260 (308)
                      .++.+|.+..+|..+++
T Consensus       299 ~~~~~g~l~ald~~tG~  315 (394)
T PRK11138        299 LVDQNDRVYALDTRGGV  315 (394)
T ss_pred             EEcCCCeEEEEECCCCc
Confidence            77889999999998874

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.80  E-value=9.5e-08  Score=78.99  Aligned_cols=158  Identities=16%  Similarity=0.119  Sum_probs=109.7

Q ss_pred             CCCCCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe----eeccCCCcEEEEEC
Q 021744           20 GGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG----RNNNFNNHSNNYRA   94 (308)
Q Consensus        20 ~~~~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~----~s~~~d~~i~vwd~   94 (308)
                      ...++.+.++|.+..++.+.+.+....++ ...++. ...      ....+ ++.|-.+...    ..++....+.+|..
T Consensus        68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~-~~~------v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   68 VLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLD-VSC------VPKRPTAISFIREDTSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             cccCCCceEEEEEeCCCceEEEEEecCCC-cceeee-Eee------cccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence            34567788999999999888888665522 000000 000      11112 4555544444    34455566777776


Q ss_pred             CCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEe-eCcccceEEEEEeCCCCEEEEeeCCC
Q 021744           95 GNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQL-EGHQKVVSGITLPSGSDKLYSGSKDE  172 (308)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg  172 (308)
                      ..+.  ..+..+|-..+..+.+++++.. +++..|..|++-..... -.+..+ .||+.-|..++.-++ ..|+|+|.|+
T Consensus       140 ~~~~--~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~-f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~  215 (390)
T KOG3914|consen  140 DSGR--CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT-FVIESFCLGHKEFVSTISLTDN-YLLLSGSGDK  215 (390)
T ss_pred             cccC--cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc-cchhhhccccHhheeeeeeccC-ceeeecCCCC
Confidence            5432  2366778888999999999977 89999999999766554 234443 579999999999864 5699999999


Q ss_pred             cEEEEeCCCCeEEEEEe
Q 021744          173 TVRVWDCASGQCAGVIN  189 (308)
Q Consensus       173 ~v~~wd~~~~~~~~~~~  189 (308)
                      +|++||+++++++.++.
T Consensus       216 tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  216 TLRLWDITSGKLLDTCD  232 (390)
T ss_pred             cEEEEecccCCcccccc
Confidence            99999999999987665

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.79  E-value=1.6e-05  Score=69.88  Aligned_cols=183  Identities=12%  Similarity=0.058  Sum_probs=110.9

Q ss_pred             eeeeeeeecCCc--eEEee---CCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEE-EeeCC--CcEEEEeCCC
Q 021744          110 TDILCRNWVQGN--CMYGE---KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGSKD--ETVRVWDCAS  181 (308)
Q Consensus       110 ~~~~~~~~~~~~--~~~g~---~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~d--g~v~~wd~~~  181 (308)
                      ....-.|+|+|.  .+..+   .+..|+++|+.++. .. .+....+......|+||++.++ +.+.+  ..|.++|+.+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~-~~-~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK-KE-KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc-EE-EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            355678999996  33222   24679999998873 32 2333455566788999998764 44434  4677889887


Q ss_pred             CeEEEEEeCCC--eeEEEEcCCCEEEEEc--CC--cEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcC-C----
Q 021744          182 GQCAGVINLGG--EVGCMISEGPWIFIGV--TN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ-D----  248 (308)
Q Consensus       182 ~~~~~~~~~~~--~v~~~~~~~~~l~~~~--d~--~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~-d----  248 (308)
                      ++.........  ....++|+|+.|+..+  .+  .|.++|+.+++...+......  ...|+|+  .++..+. .    
T Consensus       267 g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~  344 (419)
T PRK04043        267 KTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEF  344 (419)
T ss_pred             CcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCccc
Confidence            76444333332  1234578998777443  22  789999998887543322212  2489999  4444333 2    


Q ss_pred             ----CeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee----ceEEEEeecCc
Q 021744          249 ----GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV----SFIMFIGQNNK  302 (308)
Q Consensus       249 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~----s~~i~~~~~~~  302 (308)
                          ..|.+.|+.++.     ...+.... .... .|+|||+.++-+.    ...|+...-+.
T Consensus       345 ~~~~~~I~v~d~~~g~-----~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        345 GKNTFNLYLISTNSDY-----IRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CCCCcEEEEEECCCCC-----eEECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence                368888887763     23333222 2234 8999999887433    44466555443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.78  E-value=1.7e-05  Score=77.39  Aligned_cols=222  Identities=8%  Similarity=0.013  Sum_probs=134.3

Q ss_pred             eeEEecC-CCe-eeccCCCcEEEEECCCCCCccccc---c---------eeeeeeeeeeeecCCce--EEeeCCCeEEEE
Q 021744           71 AKRFANN-TWG-RNNNFNNHSNNYRAGNSKNSNINN---R---------AVIKTDILCRNWVQGNC--MYGEKCKFLHSW  134 (308)
Q Consensus        71 ~i~~s~~-g~~-~s~~~d~~i~vwd~~~~~~~~~~~---~---------~~~~~~~~~~~~~~~~~--~~g~~d~~i~iw  134 (308)
                      .+++++. +.. ++-+..+.|++||...........   .         ..-.....+++.+++..  ++......|+++
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i  651 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI  651 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence            5888875 556 787888999999985432110000   0         01112456777776653  555566889999


Q ss_pred             EcCCCceeeeEeeCc-----------------ccceEEEEEeC-CCCEEEEeeCCCcEEEEeCCCCeEEEEEeC------
Q 021744          135 TVGDGFKLLTQLEGH-----------------QKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVINL------  190 (308)
Q Consensus       135 d~~~~~~~~~~~~~h-----------------~~~v~~~~~~~-~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~------  190 (308)
                      |..++.  +.++.+-                 -.....++++| ++..+++.+.++.|++||..++........      
T Consensus       652 d~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~  729 (1057)
T PLN02919        652 DFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL  729 (1057)
T ss_pred             ecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence            987762  3333210                 12346899999 556667878889999999987754321100      


Q ss_pred             ----------CCee-EEEEcCCCEEEEE-c-CCcEEEEEcCCCceeeeeC----------------------CCCCEEEE
Q 021744          191 ----------GGEV-GCMISEGPWIFIG-V-TNFVKAWNTQTNTDLSLSG----------------------PVGQVYAM  235 (308)
Q Consensus       191 ----------~~~v-~~~~~~~~~l~~~-~-d~~i~~wd~~~~~~~~~~~----------------------~~~~v~~~  235 (308)
                                ..+. .++.++++.|+++ . ++.|++||+.++....+.+                      .-.....+
T Consensus       730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv  809 (1057)
T PLN02919        730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV  809 (1057)
T ss_pred             CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence                      0111 2345777755544 3 7899999998765331110                      01134688


Q ss_pred             EEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccc--------------cCCCeEE-EEecCCCeEEEee-ceEEEE
Q 021744          236 AVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKV--------------HTDSNRA-HFSRDVTSLLGSV-SFIMFI  297 (308)
Q Consensus       236 ~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~--------------~~~~v~~-~~s~d~~~l~~s~-s~~i~~  297 (308)
                      +++++  ++++-+.+++|++||..++.    . .++.+              .-..... +++++|+++++.. ...|.+
T Consensus       810 avd~dG~LYVADs~N~rIrviD~~tg~----v-~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv  884 (1057)
T PLN02919        810 LCAKDGQIYVADSYNHKIKKLDPATKR----V-TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY  884 (1057)
T ss_pred             eEeCCCcEEEEECCCCEEEEEECCCCe----E-EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence            89988  77778889999999998752    1 11111              1123445 8999998766544 444444


Q ss_pred             ee
Q 021744          298 GQ  299 (308)
Q Consensus       298 ~~  299 (308)
                      +.
T Consensus       885 id  886 (1057)
T PLN02919        885 LD  886 (1057)
T ss_pred             EE
Confidence            44

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.76  E-value=3.6e-07  Score=81.08  Aligned_cols=215  Identities=9%  Similarity=0.048  Sum_probs=141.9

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCC--------------cccccceeeeeeeeeeeecCCce-EEeeCCCeEEEE
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKN--------------SNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSW  134 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iw  134 (308)
                      ++.|+.+..+ |.|+.||.++|-.+++...              ..+.+.+|...|..+.|...... -+...+|.|.+|
T Consensus        19 c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVW   98 (1189)
T KOG2041|consen   19 CAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVW   98 (1189)
T ss_pred             EEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEE
Confidence            7899999999 9999999999998854321              11234678888888888877766 556689999999


Q ss_pred             EcCCCceeeeEe--eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEE-EEeCCCeeEEEE-cCCCEEEEEc-C
Q 021744          135 TVGDGFKLLTQL--EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG-VINLGGEVGCMI-SEGPWIFIGV-T  209 (308)
Q Consensus       135 d~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~-~~~~~~~v~~~~-~~~~~l~~~~-d  209 (308)
                      -+-.+. -....  .-.++.|.+++|+.+|..+...-.||.|.+=.+...+.-. .++...-.-+.+ +|.+.++.+. +
T Consensus        99 mlykgs-W~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~an  177 (1189)
T KOG2041|consen   99 MLYKGS-WCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKAN  177 (1189)
T ss_pred             eeeccc-HHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcC
Confidence            987762 22222  1245778999999999999999999999887666433211 111111112233 4555555554 8


Q ss_pred             CcEEEEEcCCCce--------ee----eeCCCCCEEEEEEe--------CC--EEEEEcCCCeEEEEEcCCCCcccccce
Q 021744          210 NFVKAWNTQTNTD--------LS----LSGPVGQVYAMAVG--------ND--LLFAGTQDGAILAWKFNVTTNCFEPAA  267 (308)
Q Consensus       210 ~~i~~wd~~~~~~--------~~----~~~~~~~v~~~~~~--------~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~  267 (308)
                      |.+++||....-.        +.    +......+-.+.|.        |+  .|+.+-..|.+.|..-.+..   .++.
T Consensus       178 ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~---~Pvv  254 (1189)
T KOG2041|consen  178 GETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP---EPVV  254 (1189)
T ss_pred             CcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC---CCeE
Confidence            8999998764411        11    11122235556553        45  89999999999998766542   2222


Q ss_pred             eccccCCCeEE-EEecCCCeEEEee
Q 021744          268 SLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       268 ~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                       + .-.-.+.. .|+++|.+|++++
T Consensus       255 -~-dtgm~~vgakWnh~G~vLAvcG  277 (1189)
T KOG2041|consen  255 -V-DTGMKIVGAKWNHNGAVLAVCG  277 (1189)
T ss_pred             -E-ecccEeecceecCCCcEEEEcc
Confidence             2 22345555 9999999999776

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.76  E-value=8e-08  Score=82.77  Aligned_cols=219  Identities=9%  Similarity=0.110  Sum_probs=137.3

Q ss_pred             CCceEEecCCCeEEEeecCCC-C---CCCCCcccccCCCCCCccccccc--eeEEecCCCeeeccCCCcEEEEECCCCCC
Q 021744           26 GGLSTADTRQKVCNYWRAGKC-N---RFPCPYLHRELPLPPAATANGAA--AKRFANNTWGRNNNFNNHSNNYRAGNSKN   99 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~-~---~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~~s~~~d~~i~vwd~~~~~~   99 (308)
                      .+.++++|.|+++++|..... .   ...|.         -+++.|..+  .+.|-.+-++ .++.|+-|.+||.=.+.+
T Consensus       747 ENSFiSASkDKTVKLWSik~EgD~~~tsaCQ---------fTY~aHkk~i~~igfL~~lr~-i~ScD~giHlWDPFigr~  816 (1034)
T KOG4190|consen  747 ENSFISASKDKTVKLWSIKPEGDEIGTSACQ---------FTYQAHKKPIHDIGFLADLRS-IASCDGGIHLWDPFIGRL  816 (1034)
T ss_pred             ccceeeccCCceEEEEEeccccCccccceee---------eEhhhccCcccceeeeeccce-eeeccCcceeecccccch
Confidence            467999999999999986532 0   01232         234455555  6777777655 344588899999866655


Q ss_pred             cccccceee-ee--eeeeeeecCCce-EEe-eCCCeEEEEEcCCCceeeeEee-----CcccceEEEEEeCCCCEEEEee
Q 021744          100 SNINNRAVI-KT--DILCRNWVQGNC-MYG-EKCKFLHSWTVGDGFKLLTQLE-----GHQKVVSGITLPSGSDKLYSGS  169 (308)
Q Consensus       100 ~~~~~~~~~-~~--~~~~~~~~~~~~-~~g-~~d~~i~iwd~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~s  169 (308)
                      +.+.....+ ..  +..|.-+.+... +.| +...+|+++|.+.. +...+++     +....+.++++.+.|++++.+-
T Consensus       817 Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc-e~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~L  895 (1034)
T KOG4190|consen  817 LAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC-EWTCELKVCNAPGPNALTRAIAVADKGNKLAAAL  895 (1034)
T ss_pred             hHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccc-cceeeEEeccCCCCchheeEEEeccCcchhhHHh
Confidence            543222222 11  222333334433 444 67899999999877 4444443     3456789999999999999999


Q ss_pred             CCCcEEEEeCCCCeEEEEEe-CCCeeEEE-EcCCCEEEEE-cCCcEEE-EEcCCCcee-eeeCCCCCEEEEEEeCCEEEE
Q 021744          170 KDETVRVWDCASGQCAGVIN-LGGEVGCM-ISEGPWIFIG-VTNFVKA-WNTQTNTDL-SLSGPVGQVYAMAVGNDLLFA  244 (308)
Q Consensus       170 ~dg~v~~wd~~~~~~~~~~~-~~~~v~~~-~~~~~~l~~~-~d~~i~~-wd~~~~~~~-~~~~~~~~v~~~~~~~~~l~~  244 (308)
                      ..|.+.+-|.++|+.+..+. .+.....+ .|..+.++.+ .|.++.+ |-.-.+-.. ..+....+..-+.--.-.+++
T Consensus       896 SnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflqsvgpSLV~  975 (1034)
T KOG4190|consen  896 SNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQSVGPSLVT  975 (1034)
T ss_pred             cCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhhccCceeEE
Confidence            99999999999999887776 33332223 4666777744 4888888 865555443 333333222211111115666


Q ss_pred             EcCCCeEEEEE
Q 021744          245 GTQDGAILAWK  255 (308)
Q Consensus       245 g~~dg~i~iwd  255 (308)
                      ......+.+|.
T Consensus       976 a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  976 AQNGNILGVYA  986 (1034)
T ss_pred             eccCcEEEEEe
Confidence            66667778875

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.76  E-value=5.8e-08  Score=78.85  Aligned_cols=154  Identities=10%  Similarity=0.084  Sum_probs=107.4

Q ss_pred             eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCC----ceeeeEeeCcccceEE
Q 021744           81 RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDG----FKLLTQLEGHQKVVSG  155 (308)
Q Consensus        81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~----~~~~~~~~~h~~~v~~  155 (308)
                      ++.+.+..|-+-|++++..   .....+..|....|...+.. ..|+.+|.|..+|++.+    ......+. |...|++
T Consensus       228 fs~G~sqqv~L~nvetg~~---qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvts  303 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ---QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTS  303 (425)
T ss_pred             ecccccceeEEEEeecccc---cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhh
Confidence            7777788888889887732   22224445777888776655 77889999999999865    23444554 8999999


Q ss_pred             EEEeC-CCCEEEEeeCCCcEEEEeCCCCeE---EEEEe-CCCe---eEE-EEcCCCEEEE-EcCCcEEEEEcCCCcee-e
Q 021744          156 ITLPS-GSDKLYSGSKDETVRVWDCASGQC---AGVIN-LGGE---VGC-MISEGPWIFI-GVTNFVKAWNTQTNTDL-S  224 (308)
Q Consensus       156 ~~~~~-~~~~l~s~s~dg~v~~wd~~~~~~---~~~~~-~~~~---v~~-~~~~~~~l~~-~~d~~i~~wd~~~~~~~-~  224 (308)
                      +..-. ++++|++.+.+|+|++||++.-++   +.++. |-..   +.. +-+.+..+++ |.|...++|.++.+.++ +
T Consensus       304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t  383 (425)
T KOG2695|consen  304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT  383 (425)
T ss_pred             hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence            98776 788999999999999999998776   66665 2111   111 1234455554 55889999999999887 3


Q ss_pred             eeC----CCCCEEEEEEe
Q 021744          225 LSG----PVGQVYAMAVG  238 (308)
Q Consensus       225 ~~~----~~~~v~~~~~~  238 (308)
                      +.-    .+..+.++++.
T Consensus       384 ipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  384 IPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             cCCCCccccccccceehh
Confidence            332    22245555554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.74  E-value=6.8e-05  Score=61.22  Aligned_cols=207  Identities=11%  Similarity=0.059  Sum_probs=127.1

Q ss_pred             eeEEec-CCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeee-cCCceEEeeCCCeEEEEEcCCCceeeeEee
Q 021744           71 AKRFAN-NTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNW-VQGNCMYGEKCKFLHSWTVGDGFKLLTQLE  147 (308)
Q Consensus        71 ~i~~s~-~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~  147 (308)
                      .+.|.+ ++.+ ++--..+.|..|+..+++........    ...+.+. +++.++.+...+. .++|+.++ +......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g-~~~~~~~   77 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADSGGI-AVVDPDTG-KVTVLAD   77 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEETTCE-EEEETTTT-EEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEcCce-EEEecCCC-cEEEEee
Confidence            357777 5666 77778899999998766432211111    4555565 6666666665444 55598887 3322222


Q ss_pred             C-----cccceEEEEEeCCCCEEEEeeCC--------CcEEEEeCCCCeEEEEEeC-C-CeeEEEEcCCCEEEEE-c-CC
Q 021744          148 G-----HQKVVSGITLPSGSDKLYSGSKD--------ETVRVWDCASGQCAGVINL-G-GEVGCMISEGPWIFIG-V-TN  210 (308)
Q Consensus       148 ~-----h~~~v~~~~~~~~~~~l~s~s~d--------g~v~~wd~~~~~~~~~~~~-~-~~v~~~~~~~~~l~~~-~-d~  210 (308)
                      .     .......++++|+|++.++....        |.|..++.. ++....... . ..-.++.++++.|++. + .+
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred             ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence            1     34567899999999977776654        557777777 554444432 2 2233557889887754 3 77


Q ss_pred             cEEEEEcCCCc--ee---ee---eCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-E
Q 021744          211 FVKAWNTQTNT--DL---SL---SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-H  279 (308)
Q Consensus       211 ~i~~wd~~~~~--~~---~~---~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~  279 (308)
                      .|..+++....  ..   .+   .......-.+++..+  +.++....+.|.+++.. +    +.+..+......++. +
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G----~~~~~i~~p~~~~t~~~  231 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G----KLLREIELPVPRPTNCA  231 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S----CEEEEEE-SSSSEEEEE
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c----cEEEEEcCCCCCEEEEE
Confidence            89999886332  11   12   222234788999988  55555568899999988 4    556666544345555 9


Q ss_pred             Ee-cCCCeEEE
Q 021744          280 FS-RDVTSLLG  289 (308)
Q Consensus       280 ~s-~d~~~l~~  289 (308)
                      |. ++...|..
T Consensus       232 fgg~~~~~L~v  242 (246)
T PF08450_consen  232 FGGPDGKTLYV  242 (246)
T ss_dssp             EESTTSSEEEE
T ss_pred             EECCCCCEEEE
Confidence            95 66565553

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.69  E-value=1.5e-05  Score=64.59  Aligned_cols=208  Identities=13%  Similarity=0.088  Sum_probs=121.5

Q ss_pred             CCcEEEEECCCCCCcccccceeeeeeeee-eeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCE
Q 021744           86 NNHSNNYRAGNSKNSNINNRAVIKTDILC-RNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDK  164 (308)
Q Consensus        86 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (308)
                      +++|..||..+++.+-............+ .....+.+++++.++.|+.||..++ +.+..+.. ...+...- ...+..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG-~~~W~~~~-~~~~~~~~-~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTG-KVLWRFDL-PGPISGAP-VVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTS-EEEEEEEC-SSCGGSGE-EEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCC-CEEEEeec-ccccccee-eecccc
Confidence            67889999988765533221111111122 2234556677789999999999999 67766654 22222211 223456


Q ss_pred             EEEeeCCCcEEEEeCCCCeEEEEE-eCCC---e---eEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCC----
Q 021744          165 LYSGSKDETVRVWDCASGQCAGVI-NLGG---E---VGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQ----  231 (308)
Q Consensus       165 l~s~s~dg~v~~wd~~~~~~~~~~-~~~~---~---v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~----  231 (308)
                      ++.++.++.+..+|.++|+.+... ....   .   .......+..++++. ++.|..+|+++++.+ ........    
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~  158 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP  158 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence            777778889999999999999985 4221   1   112233466666655 999999999999987 33332211    


Q ss_pred             -------EEEEEEeCCEEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEEEEecCCCeEEEee-ceEEEEeecCc
Q 021744          232 -------VYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRAHFSRDVTSLLGSV-SFIMFIGQNNK  302 (308)
Q Consensus       232 -------v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~s~d~~~l~~s~-s~~i~~~~~~~  302 (308)
                             ...+.+..+.++.++.++.+.-+|+.++    +.+....  ..........++..|+... +..++.+....
T Consensus       159 ~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg----~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  159 ISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATG----EKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTT----EEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred             eeeecccccceEEECCEEEEEcCCCeEEEEECCCC----CEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence                   1334444446666777775433499997    3222221  2222222456666666443 56666655333

...

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=6.7e-07  Score=75.25  Aligned_cols=247  Identities=12%  Similarity=0.046  Sum_probs=153.6

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccC-CCcEEEEECCCCCCccc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNF-NNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~-d~~i~vwd~~~~~~~~~  102 (308)
                      ..+.++|.|+.++.|....-+         -.......+.|...  .++.+.++.. .|.+. |..+|++|+++-.....
T Consensus        21 ~fiiqASlDGh~KFWkKs~is---------GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminm   91 (558)
T KOG0882|consen   21 KFIIQASLDGHKKFWKKSRIS---------GVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINM   91 (558)
T ss_pred             heEEeeecchhhhhcCCCCcc---------ceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhh
Confidence            468999999999999754310         01222334455555  7889999999 88777 99999999976654422


Q ss_pred             ccceeeeeeeeeeeecCC---ce-EEeeCCCeEEEEEcCCCc-eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEE
Q 021744          103 NNRAVIKTDILCRNWVQG---NC-MYGEKCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW  177 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~---~~-~~g~~d~~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~w  177 (308)
                      .....--....+..++..   .. ++.-+++.+.++|-.... +....-+-|..+|..+.+++.+..++|....|.|..|
T Consensus        92 iKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyW  171 (558)
T KOG0882|consen   92 IKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYW  171 (558)
T ss_pred             cccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEee
Confidence            111111111122222221   22 455678999999987553 3334445699999999999999999999999999999


Q ss_pred             eCCC-CeEEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEE
Q 021744          178 DCAS-GQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILA  253 (308)
Q Consensus       178 d~~~-~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~i  253 (308)
                      ..+. .+....              +          .-|.++...-+ .+.-......++.|+|+  .+.+-+.|..|++
T Consensus       172 s~e~~~qfPr~--------------~----------l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~  227 (558)
T KOG0882|consen  172 SAEGPFQFPRT--------------N----------LNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRG  227 (558)
T ss_pred             cCCCcccCccc--------------c----------ccccccccchhhcccccccCccceEEccccCcccccCcccEEEE
Confidence            9773 111100              0          01222222222 22233456778889988  7777778999999


Q ss_pred             EEcCCCCcc----------------------------cccceeccccCCCe--EEEEecCCCeEEEee--ceEEEEeecC
Q 021744          254 WKFNVTTNC----------------------------FEPAASLKVHTDSN--RAHFSRDVTSLLGSV--SFIMFIGQNN  301 (308)
Q Consensus       254 wd~~~~~~~----------------------------~~~~~~~~~~~~~v--~~~~s~d~~~l~~s~--s~~i~~~~~~  301 (308)
                      +++.+++..                            ...-+.++.|...+  +..|...|.+|+-..  .+.++...+|
T Consensus       228 F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn  307 (558)
T KOG0882|consen  228 FVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTN  307 (558)
T ss_pred             EEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecC
Confidence            988876420                            00001222344333  338888899888443  6667777776


Q ss_pred             ceeEE
Q 021744          302 KGVVC  306 (308)
Q Consensus       302 ~~~~~  306 (308)
                      .-+..
T Consensus       308 ~v~ri  312 (558)
T KOG0882|consen  308 TVVRI  312 (558)
T ss_pred             eEEEE
Confidence            65543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.59  E-value=4.5e-06  Score=65.93  Aligned_cols=165  Identities=12%  Similarity=0.024  Sum_probs=106.5

Q ss_pred             ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCC-CCEEEEeeCCCcEEEEeCCCCeEEEEEeCC---CeeEE
Q 021744          121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVINLG---GEVGC  196 (308)
Q Consensus       121 ~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~---~~v~~  196 (308)
                      .++.|+..|...+|...+....++....|...|+-+.=.-+ ...+..++.|.++++.++.-+.........   .....
T Consensus        86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~  165 (344)
T KOG4532|consen   86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLH  165 (344)
T ss_pred             EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeE
Confidence            33678899999999999774445544445444332221111 234777889999999988754332222211   12223


Q ss_pred             EEcCCCEEEE-EcCCcEEEEEcCCCcee----eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcc-ccccee
Q 021744          197 MISEGPWIFI-GVTNFVKAWNTQTNTDL----SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNC-FEPAAS  268 (308)
Q Consensus       197 ~~~~~~~l~~-~~d~~i~~wd~~~~~~~----~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~-~~~~~~  268 (308)
                      ++++++++++ |....|..|.+......    .....++.-.+..|+..  .+|++++||++.|||++....- .....+
T Consensus       166 ~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sst  245 (344)
T KOG4532|consen  166 YSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISST  245 (344)
T ss_pred             EcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhccc
Confidence            4678999885 55779999988765332    23344455677888876  9999999999999999875311 112223


Q ss_pred             ccccCCCeEE-EEecCCC
Q 021744          269 LKVHTDSNRA-HFSRDVT  285 (308)
Q Consensus       269 ~~~~~~~v~~-~~s~d~~  285 (308)
                      -..|.+.++. .|++.|.
T Consensus       246 rp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  246 RPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             CCCCCCceEEEEecCCCc
Confidence            3468888988 9998664

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.57  E-value=4.8e-05  Score=66.00  Aligned_cols=126  Identities=13%  Similarity=0.211  Sum_probs=89.8

Q ss_pred             CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEE--EeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE-EcCCCEE
Q 021744          128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY--SGSKDETVRVWDCASGQCAGVINLGGEVGCM-ISEGPWI  204 (308)
Q Consensus       128 d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~--s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~-~~~~~~l  204 (308)
                      +..+++.+++.. ...-.+. -.++|.++.|+|+++.++  -|-.=-.+.|+|++ +.++..+.....-+.+ .|.|+++
T Consensus       250 Eq~Lyll~t~g~-s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~egpRN~~~fnp~g~ii  326 (566)
T KOG2315|consen  250 EQTLYLLATQGE-SVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEGPRNTAFFNPHGNII  326 (566)
T ss_pred             cceEEEEEecCc-eEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCCCccceEECCCCCEE
Confidence            357788887743 4444444 479999999999997764  44566789999988 6666666544444444 4678887


Q ss_pred             EE-Ec---CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcC------CCeEEEEEcCC
Q 021744          205 FI-GV---TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQ------DGAILAWKFNV  258 (308)
Q Consensus       205 ~~-~~---d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~------dg~i~iwd~~~  258 (308)
                      +. |.   .|.+-+||..+.+++ .+....  -+-+.|+||  +|++++.      |+.++||++..
T Consensus       327 ~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  327 LLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             EEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence            74 43   579999999997777 454433  345889999  7776664      78899999875

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.50  E-value=5.3e-07  Score=50.57  Aligned_cols=32  Identities=28%  Similarity=0.618  Sum_probs=30.7

Q ss_pred             eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEE
Q 021744          224 SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK  255 (308)
Q Consensus       224 ~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd  255 (308)
                      .+.+|...|++|+|+|+  +|++++.|+.|++||
T Consensus         6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            78899999999999999  999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=4.8e-05  Score=66.03  Aligned_cols=223  Identities=9%  Similarity=-0.009  Sum_probs=132.3

Q ss_pred             ccccc-eeEEecCCCe-eeccCC-----------CcEEEEECCCCCCcccccceeee-e-eeeeeeecCCceEEeeCCCe
Q 021744           66 ANGAA-AKRFANNTWG-RNNNFN-----------NHSNNYRAGNSKNSNINNRAVIK-T-DILCRNWVQGNCMYGEKCKF  130 (308)
Q Consensus        66 gh~~~-~i~~s~~g~~-~s~~~d-----------~~i~vwd~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~g~~d~~  130 (308)
                      .|.+- -+.|||..+| +|-+.-           ..++|||+.+|............ . -....++.++.+.+.-....
T Consensus       248 ~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s  327 (698)
T KOG2314|consen  248 YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS  327 (698)
T ss_pred             cCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccce
Confidence            34444 6889999998 776532           56899999988654332221111 1 23457788887755444588


Q ss_pred             EEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCC-----CcEEEEeCCCCeEEEEEeCCCeeEE--EE-cCCC
Q 021744          131 LHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD-----ETVRVWDCASGQCAGVINLGGEVGC--MI-SEGP  202 (308)
Q Consensus       131 i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-----g~v~~wd~~~~~~~~~~~~~~~v~~--~~-~~~~  202 (308)
                      |.||+...- .++..-.-....|....|+|.++.||--...     ..+.+-.+.+++.+++-+.-....|  .+ .+|.
T Consensus       328 isIyEtpsf-~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd  406 (698)
T KOG2314|consen  328 ISIYETPSF-MLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD  406 (698)
T ss_pred             EEEEecCce-eeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCc
Confidence            999987653 2222211234678889999998777644332     2455666666666655442211112  22 5677


Q ss_pred             EEEEEcC--------C---cEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EE--EEEc-CCCeEEEEEcCCCCccccc
Q 021744          203 WIFIGVT--------N---FVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LL--FAGT-QDGAILAWKFNVTTNCFEP  265 (308)
Q Consensus       203 ~l~~~~d--------~---~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l--~~g~-~dg~i~iwd~~~~~~~~~~  265 (308)
                      +|+.-.|        |   .+.++.++..... ....-...|...+|-|.  .+  ++|. ...++.+|.+++...-.++
T Consensus       407 yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l  486 (698)
T KOG2314|consen  407 YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL  486 (698)
T ss_pred             EEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence            8775321        1   3445555554433 23334568889999987  33  3332 2456899998853322355


Q ss_pred             ceeccccCCCeEE-EEecCCCeEEEee
Q 021744          266 AASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       266 ~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      +..+..  ...+. .|+|.|+++++++
T Consensus       487 Vk~~dk--~~~N~vfwsPkG~fvvva~  511 (698)
T KOG2314|consen  487 VKELDK--KFANTVFWSPKGRFVVVAA  511 (698)
T ss_pred             hhhhcc--cccceEEEcCCCcEEEEEE
Confidence            666653  44555 8999999998654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.45  E-value=0.00055  Score=56.42  Aligned_cols=227  Identities=11%  Similarity=0.037  Sum_probs=135.8

Q ss_pred             CCccccccceeEEecCCCe--eeccCCCc-EEEEECCCCCCcccccceeee-eeeeeeeecCCceEEee------CCCeE
Q 021744           62 PAATANGAAAKRFANNTWG--RNNNFNNH-SNNYRAGNSKNSNINNRAVIK-TDILCRNWVQGNCMYGE------KCKFL  131 (308)
Q Consensus        62 ~~~~gh~~~~i~~s~~g~~--~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~------~d~~i  131 (308)
                      .|.++|   .++.+|....  +.+-.-|+ ..+||..+++........... ..--..|+++|..++..      ..|.|
T Consensus         3 lP~RgH---~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~I   79 (305)
T PF07433_consen    3 LPARGH---GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVI   79 (305)
T ss_pred             CCcccc---ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEE
Confidence            345677   4788885555  77777776 588999888765322211111 12345789999774433      36899


Q ss_pred             EEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEee------------------CCCcEEEEeCCCCeEEEEEeC---
Q 021744          132 HSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS------------------KDETVRVWDCASGQCAGVINL---  190 (308)
Q Consensus       132 ~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s------------------~dg~v~~wd~~~~~~~~~~~~---  190 (308)
                      -|||.....+.+.++..|--....+.+.||++.|+.+-                  .+-++.+-|..+|+.+.+...   
T Consensus        80 gVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~  159 (305)
T PF07433_consen   80 GVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD  159 (305)
T ss_pred             EEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence            99999955478888888777778889999997776653                  123455556777777766542   


Q ss_pred             --CCeeEEE--EcCCCEEEEEc-CC-------cEEEEEcCCC-ceee-----eeCCCCCEEEEEEeCC---EEEEEcCCC
Q 021744          191 --GGEVGCM--ISEGPWIFIGV-TN-------FVKAWNTQTN-TDLS-----LSGPVGQVYAMAVGND---LLFAGTQDG  249 (308)
Q Consensus       191 --~~~v~~~--~~~~~~l~~~~-d~-------~i~~wd~~~~-~~~~-----~~~~~~~v~~~~~~~~---~l~~g~~dg  249 (308)
                        .-.+.-+  ..+|..++... .+       -|-+++.... +...     ...-...+-+|+++++   ..+++-.-+
T Consensus       160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg  239 (305)
T PF07433_consen  160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG  239 (305)
T ss_pred             ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence              2223333  23444444321 11       1233332221 0111     1223468899999988   456666788


Q ss_pred             eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEEEe
Q 021744          250 AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMFIG  298 (308)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~~  298 (308)
                      .+.+||..++    +.+....  -..++. +-.+++ ++++++...++..
T Consensus       240 ~~~~~d~~tg----~~~~~~~--l~D~cGva~~~~~-f~~ssG~G~~~~~  282 (305)
T PF07433_consen  240 RVAVWDAATG----RLLGSVP--LPDACGVAPTDDG-FLVSSGQGQLIRL  282 (305)
T ss_pred             EEEEEECCCC----CEeeccc--cCceeeeeecCCc-eEEeCCCccEEEc
Confidence            9999999997    4444332  223333 444554 7777775554443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.40  E-value=7.8e-06  Score=65.95  Aligned_cols=191  Identities=10%  Similarity=0.145  Sum_probs=121.5

Q ss_pred             eeeeeeeecCCce-EEeeCCCeEEEEEcCCCc----eeeeEeeCcc------------cceEEEEEeCCC--CEEEEeeC
Q 021744          110 TDILCRNWVQGNC-MYGEKCKFLHSWTVGDGF----KLLTQLEGHQ------------KVVSGITLPSGS--DKLYSGSK  170 (308)
Q Consensus       110 ~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~----~~~~~~~~h~------------~~v~~~~~~~~~--~~l~s~s~  170 (308)
                      .+..+.|-..|.+ ++|...|.|.+|.-....    +....+++|.            ..|..+.|-.++  ..++..+.
T Consensus        28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstN  107 (460)
T COG5170          28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTN  107 (460)
T ss_pred             eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecC
Confidence            3777888888877 778888999999865432    2334455554            467888886543  45777789


Q ss_pred             CCcEEEEeCCCCeE-------------------EE--------EEe-----------------CCCeeEEEE--cCCCEE
Q 021744          171 DETVRVWDCASGQC-------------------AG--------VIN-----------------LGGEVGCMI--SEGPWI  204 (308)
Q Consensus       171 dg~v~~wd~~~~~~-------------------~~--------~~~-----------------~~~~v~~~~--~~~~~l  204 (308)
                      |++|++|.+.....                   +.        .+.                 |...+.+++  ++.+.+
T Consensus       108 dktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~  187 (460)
T COG5170         108 DKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETL  187 (460)
T ss_pred             CceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhee
Confidence            99999997754310                   00        000                 111222232  355667


Q ss_pred             EEEcCCcEEEEEcCCC----ceeeeeCCC-----CCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceecc--
Q 021744          205 FIGVTNFVKAWNTQTN----TDLSLSGPV-----GQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLK--  270 (308)
Q Consensus       205 ~~~~d~~i~~wd~~~~----~~~~~~~~~-----~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~--  270 (308)
                      +++.|=.|.+|++.--    ..+.++.|.     .-|++..|+|.   .+.-.+..|.|++-|++....+..+...+.  
T Consensus       188 lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~  267 (460)
T COG5170         188 LSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELT  267 (460)
T ss_pred             eeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhc
Confidence            7777889999988643    222444444     36889999998   677778899999999985432212222111  


Q ss_pred             ----------ccCCCeEE-EEecCCCeEEEee--ceEEEEeec
Q 021744          271 ----------VHTDSNRA-HFSRDVTSLLGSV--SFIMFIGQN  300 (308)
Q Consensus       271 ----------~~~~~v~~-~~s~d~~~l~~s~--s~~i~~~~~  300 (308)
                                .-...|+. .|++.|+++++-.  ++.||-..+
T Consensus       268 ~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm  310 (460)
T COG5170         268 IDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNM  310 (460)
T ss_pred             cCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccc
Confidence                      11235666 8999999998655  666665543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.40  E-value=1.2e-05  Score=64.84  Aligned_cols=215  Identities=9%  Similarity=0.102  Sum_probs=118.2

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--------------eeEEe-cCCCe--eeccCCC
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--------------AKRFA-NNTWG--RNNNFNN   87 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--------------~i~~s-~~g~~--~s~~~d~   87 (308)
                      .|.+++||...|.|-++.-...  ..|.+..     ...+++|+..              .+.|- +.+..  +..+.|+
T Consensus        37 tg~YlatGDkgGRVvlfer~~s--~~ceykf-----~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdk  109 (460)
T COG5170          37 TGLYLATGDKGGRVVLFEREKS--YGCEYKF-----FTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDK  109 (460)
T ss_pred             ccceEeecCCCceEEEeecccc--cccchhh-----hhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCc
Confidence            3678999999999999875432  2344311     1112222111              45554 44443  7888999


Q ss_pred             cEEEEECCCCC-------------------C------ccccc-----------------ceeeeeeeeeeeecCCceEEe
Q 021744           88 HSNNYRAGNSK-------------------N------SNINN-----------------RAVIKTDILCRNWVQGNCMYG  125 (308)
Q Consensus        88 ~i~vwd~~~~~-------------------~------~~~~~-----------------~~~~~~~~~~~~~~~~~~~~g  125 (308)
                      +|++|.+-...                   +      +..+.                 ..|.-.+.++.+..+......
T Consensus       110 tiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lS  189 (460)
T COG5170         110 TIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLS  189 (460)
T ss_pred             eeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeee
Confidence            99999883220                   0      00000                 111222444555555555556


Q ss_pred             eCCCeEEEEEcCCCce--eeeEeeCc-----ccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE
Q 021744          126 EKCKFLHSWTVGDGFK--LLTQLEGH-----QKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM  197 (308)
Q Consensus       126 ~~d~~i~iwd~~~~~~--~~~~~~~h-----~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~  197 (308)
                      ..|-.|.+|++.-...  .+-.++.|     +.-|++..|+|.. ..+.-.+..|.|++-|++....-            
T Consensus       190 aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc------------  257 (460)
T COG5170         190 ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC------------  257 (460)
T ss_pred             ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc------------
Confidence            7788899998864311  12233334     3467888888864 45566667788999888743211            


Q ss_pred             EcCCCEEEEEcCCcEEEEEcCCCc-ee-eeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceecccc
Q 021744          198 ISEGPWIFIGVTNFVKAWNTQTNT-DL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH  272 (308)
Q Consensus       198 ~~~~~~l~~~~d~~i~~wd~~~~~-~~-~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  272 (308)
                                 |..-+++...-.. .. -+.+-...|..+.|+++ .++.+-.--+|+|||++..+   .++.++.-|
T Consensus       258 -----------dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k---~pikTi~~h  321 (460)
T COG5170         258 -----------DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK---NPIKTIPMH  321 (460)
T ss_pred             -----------cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc---CCceeechH
Confidence                       1111111100000 00 12223456788899998 44444555689999998764   566666443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=7.8e-05  Score=67.51  Aligned_cols=189  Identities=10%  Similarity=-0.048  Sum_probs=128.9

Q ss_pred             CCCceeEEEeecCCCCCCC----------CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEe
Q 021744            6 HGGNKRVFHRLGGGGGDGG----------GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFA   75 (308)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~----------~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s   75 (308)
                      +|-+|.-|.|+++....--          ....++-|+-+|.+++.+.+..            +  ....-|..    -.
T Consensus        19 deePklkY~Ri~n~~~~~~~~D~is~~av~~~~~~~GtH~g~v~~~~~~~~------------~--~~~~~~s~----~~   80 (846)
T KOG2066|consen   19 DEEPKLKYERISNLVKNFLQNDAISCCAVHDKFFALGTHRGAVYLTTCQGN------------P--KTNFDHSS----SI   80 (846)
T ss_pred             ccCccceehhhhcccHHHHhhhHHHHHHhhcceeeeccccceEEEEecCCc------------c--cccccccc----cc
Confidence            5666778888877733211          1456777888888888876644            1  11111111    14


Q ss_pred             cCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecC------CceEEeeCCCeEEEEEcC--CCceeeeEe
Q 021744           76 NNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQ------GNCMYGEKCKFLHSWTVG--DGFKLLTQL  146 (308)
Q Consensus        76 ~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~d~~i~iwd~~--~~~~~~~~~  146 (308)
                      -+|.+ +||+.||+|.|-.+-+.+..  ........+..+++.|+      +.+++|+.-| +.++.-+  .. +....+
T Consensus        81 ~~Gey~asCS~DGkv~I~sl~~~~~~--~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-k~~v~l  156 (846)
T KOG2066|consen   81 LEGEYVASCSDDGKVVIGSLFTDDEI--TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-KDSVVL  156 (846)
T ss_pred             cCCceEEEecCCCcEEEeeccCCccc--eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-ccceee
Confidence            56889 99999999999998766554  33445566888888887      2458898888 7776533  11 111245


Q ss_pred             eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCC--------eeEEEEcCCCEEEEEcCCcEEEEEcC
Q 021744          147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG--------EVGCMISEGPWIFIGVTNFVKAWNTQ  218 (308)
Q Consensus       147 ~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~--------~v~~~~~~~~~l~~~~d~~i~~wd~~  218 (308)
                      ....++|.++.|.  |+++|-++.+| |++||..+++.+..++.+.        +..-.|.+...|+.|-..+|++..++
T Consensus       157 ~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  157 SEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK  233 (846)
T ss_pred             ecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence            5567899999997  56777777766 9999999999888877322        11223667888899988888888887


Q ss_pred             C
Q 021744          219 T  219 (308)
Q Consensus       219 ~  219 (308)
                      .
T Consensus       234 ~  234 (846)
T KOG2066|consen  234 K  234 (846)
T ss_pred             c
Confidence            3

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.36  E-value=0.00023  Score=60.96  Aligned_cols=158  Identities=12%  Similarity=0.069  Sum_probs=108.2

Q ss_pred             CCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCC-eEEEEEcCCCceeeeEeeCcccce
Q 021744           77 NTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCK-FLHSWTVGDGFKLLTQLEGHQKVV  153 (308)
Q Consensus        77 ~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~-~i~iwd~~~~~~~~~~~~~h~~~v  153 (308)
                      +|.+ +..|..+ ..|.+...+-.   ...++...+....+..++.. +.|..|| .+-|+|..++.  ++.+...-+.|
T Consensus       331 ~Gd~ia~VSRGk-aFi~~~~~~~~---iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~I  404 (668)
T COG4946         331 NGDYIALVSRGK-AFIMRPWDGYS---IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGNI  404 (668)
T ss_pred             CCcEEEEEecCc-EEEECCCCCee---EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEeeCCccce
Confidence            4556 5555544 44443322211   22334445777777766655 8888888 89999999883  45566677899


Q ss_pred             EEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-C----CcEEEEEcCCCceeee
Q 021744          154 SGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-T----NFVKAWNTQTNTDLSL  225 (308)
Q Consensus       154 ~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d----~~i~~wd~~~~~~~~~  225 (308)
                      .++..+++|++++.+.....+.+.|+.++.....-+ ..+-+..+  +++.+++|-+. +    ..|+++|+.+++....
T Consensus       405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v  484 (668)
T COG4946         405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV  484 (668)
T ss_pred             EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence            999999999999999988999999999987654444 33445544  57788888654 4    4799999999887754


Q ss_pred             eCCCCCEEEEEEeCC
Q 021744          226 SGPVGQVYAMAVGND  240 (308)
Q Consensus       226 ~~~~~~v~~~~~~~~  240 (308)
                      ......=.+-+|.|+
T Consensus       485 TT~ta~DfsPaFD~d  499 (668)
T COG4946         485 TTPTAYDFSPAFDPD  499 (668)
T ss_pred             cCCcccccCcccCCC
Confidence            444333345556665

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.34  E-value=3.1e-06  Score=66.52  Aligned_cols=157  Identities=17%  Similarity=0.198  Sum_probs=100.8

Q ss_pred             eeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeE-EEEEe---CCCeeEEEEcCCCEEEEEc------CCcE
Q 021744          143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC-AGVIN---LGGEVGCMISEGPWIFIGV------TNFV  212 (308)
Q Consensus       143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~-~~~~~---~~~~v~~~~~~~~~l~~~~------d~~i  212 (308)
                      .+.+..|+++-.+-+.+--++-++++..||.+.+.+.+.-.. ...+.   ....-.+....++++.++.      -+..
T Consensus        82 ~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~  161 (319)
T KOG4714|consen   82 FKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNF  161 (319)
T ss_pred             eeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccce
Confidence            444444443333333333456799999999999998775211 11111   1122223345566666543      3355


Q ss_pred             EEEEcCCCcee-eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecC-CCe
Q 021744          213 KAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRD-VTS  286 (308)
Q Consensus       213 ~~wd~~~~~~~-~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d-~~~  286 (308)
                      +.|+++..+.. .-......|.+++-+|.   .+++|++||.+-+||.+...   -+...+..|...++- .|.|. +..
T Consensus       162 ~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~---~p~S~l~ahk~~i~eV~FHpk~p~~  238 (319)
T KOG4714|consen  162 YANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA---MPVSLLKAHKAEIWEVHFHPKNPEH  238 (319)
T ss_pred             eeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc---chHHHHHHhhhhhhheeccCCCchh
Confidence            67777654433 11112234999999987   89999999999999999873   566778899999999 99984 455


Q ss_pred             EE-EeeceEEEEeecCc
Q 021744          287 LL-GSVSFIMFIGQNNK  302 (308)
Q Consensus       287 l~-~s~s~~i~~~~~~~  302 (308)
                      |+ ++.+..+|-|..+.
T Consensus       239 Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  239 LFTCSEDGSLWHWDAST  255 (319)
T ss_pred             eeEecCCCcEEEEcCCC
Confidence            65 45588999888764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.30  E-value=0.0003  Score=60.63  Aligned_cols=195  Identities=8%  Similarity=-0.025  Sum_probs=112.5

Q ss_pred             CcEEEEECCCCCCcccccceeee-eee-eeeeecCCceEEeeCCCeEEEEEcCCCc---eeeeEeeCcccceEEEEEeCC
Q 021744           87 NHSNNYRAGNSKNSNINNRAVIK-TDI-LCRNWVQGNCMYGEKCKFLHSWTVGDGF---KLLTQLEGHQKVVSGITLPSG  161 (308)
Q Consensus        87 ~~i~vwd~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~g~~d~~i~iwd~~~~~---~~~~~~~~h~~~v~~~~~~~~  161 (308)
                      +.+.+||..++..+......... ... .+.|+.+..++.---...++|+++ +..   ...+.++  ...|....|+|.
T Consensus       108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~  184 (561)
T COG5354         108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPE  184 (561)
T ss_pred             CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhcc--ccceeeEEecCC
Confidence            35999999888755332222111 133 566777765522223456889997 331   1122222  367888889986


Q ss_pred             CC--EEEE-----eeCCCcEEEEeCCCCeEEEEEe--CCCeeEE-EEcCCCEEEEE------------cCCcEEEEEcCC
Q 021744          162 SD--KLYS-----GSKDETVRVWDCASGQCAGVIN--LGGEVGC-MISEGPWIFIG------------VTNFVKAWNTQT  219 (308)
Q Consensus       162 ~~--~l~s-----~s~dg~v~~wd~~~~~~~~~~~--~~~~v~~-~~~~~~~l~~~------------~d~~i~~wd~~~  219 (308)
                      ++  .|+.     ....+++++|.+..+..+.+-.  .-..+.- .-+.|++|++-            ....+++++++.
T Consensus       185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e  264 (561)
T COG5354         185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE  264 (561)
T ss_pred             CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence            43  2332     3567789999888666554433  1111111 12445554421            134678888885


Q ss_pred             CceeeeeCCCCCEEEEEEeCC----EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          220 NTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       220 ~~~~~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      ........-.++|...+|.|.    -+++|-.+-.+.++|++..     ..  +......-+. .|+|.+++++..+
T Consensus       265 ~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-----l~--~~~Pe~~rNT~~fsp~~r~il~ag  334 (561)
T COG5354         265 RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-----LR--FYFPEQKRNTIFFSPHERYILFAG  334 (561)
T ss_pred             cccceeccccccceeeeecccCCceeEEecccccceeecccccc-----eE--EecCCcccccccccCcccEEEEec
Confidence            554433366889999999887    3455567888999998873     11  1222233333 6777777776544

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=3.8e-05  Score=69.45  Aligned_cols=166  Identities=10%  Similarity=0.035  Sum_probs=115.3

Q ss_pred             CCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEE
Q 021744          119 QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI  198 (308)
Q Consensus       119 ~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~  198 (308)
                      +...+.|..+|.|++++....  + .+...|...      +.+|++++|||.||+|.+-.+-+.+...++....++.++.
T Consensus        49 ~~~~~~GtH~g~v~~~~~~~~--~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksia  119 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQGN--P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIA  119 (846)
T ss_pred             cceeeeccccceEEEEecCCc--c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEE
Confidence            334578999999999998654  2 344445544      6689999999999999999999998888888777777663


Q ss_pred             --cC-----CCEEEEEc-CCcEEEEEcCCCc---eeeeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcCCCCcccccce
Q 021744          199 --SE-----GPWIFIGV-TNFVKAWNTQTNT---DLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAA  267 (308)
Q Consensus       199 --~~-----~~~l~~~~-d~~i~~wd~~~~~---~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~  267 (308)
                        |+     .+.+++|+ .| +.++.-+-..   ...+....++|.++.|..+++|-++++ -|++||....    +.+.
T Consensus       120 l~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~-Gv~vyd~~~~----~~l~  193 (846)
T KOG2066|consen  120 LHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDD-GVKVYDTPTR----QRLT  193 (846)
T ss_pred             eccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCC-CcEEEecccc----ceee
Confidence              43     34566666 55 7776543222   224566678999999999988888766 4899999986    3344


Q ss_pred             eccccCCC------eEE-EEecCCCeEEEee-ceEEEEee
Q 021744          268 SLKVHTDS------NRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       268 ~~~~~~~~------v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      .++.....      ... .|.++.+++.+-+ ++.|+...
T Consensus       194 ~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  194 NIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK  233 (846)
T ss_pred             ccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence            44322222      223 7777777666544 56666555

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.27  E-value=0.00091  Score=57.77  Aligned_cols=240  Identities=8%  Similarity=-0.026  Sum_probs=139.8

Q ss_pred             CCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceee-eee
Q 021744           35 QKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVI-KTD  111 (308)
Q Consensus        35 d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~  111 (308)
                      +..+.+||..++.     ++........   ....+ -+.|+-+.++ |=- ....+.|+++ ++.....+....+ ..+
T Consensus       107 ~n~~~vwd~~sg~-----iv~sf~~~~q---~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi  176 (561)
T COG5354         107 KNNVFVWDIASGM-----IVFSFNGISQ---PYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGI  176 (561)
T ss_pred             cCceeEEeccCce-----eEeeccccCC---cccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccce
Confidence            3468999987761     1111111111   12234 6789999988 333 4556999997 4433222222222 235


Q ss_pred             eeeeeecCCce---E-----EeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEee-----------CCC
Q 021744          112 ILCRNWVQGNC---M-----YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS-----------KDE  172 (308)
Q Consensus       112 ~~~~~~~~~~~---~-----~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-----------~dg  172 (308)
                      ....++|.+..   +     ..+....+++|.+..+ ..+.+..--+..=..+.|++.+++++.--           ...
T Consensus       177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~-s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfges  255 (561)
T COG5354         177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN-SVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGES  255 (561)
T ss_pred             eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC-CeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccc
Confidence            55666666422   1     2677889999999855 33332221223335678888887754321           124


Q ss_pred             cEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEE--EEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEE
Q 021744          173 TVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIF--IGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAG  245 (308)
Q Consensus       173 ~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~--~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g  245 (308)
                      .+.|++++...+.......++|-.+  .|.++.++  +|. .-.+.++|++..  +.+......-+.+.|+|.  +++.+
T Consensus       256 nLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~a  333 (561)
T COG5354         256 NLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFA  333 (561)
T ss_pred             eEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEe
Confidence            5677777633222222345666655  25555444  344 779999999987  545555666677889998  66665


Q ss_pred             cC---CCeEEEEEcCCCCcccccceeccccCCCeEEEEecCCCeEEEee
Q 021744          246 TQ---DGAILAWKFNVTTNCFEPAASLKVHTDSNRAHFSRDVTSLLGSV  291 (308)
Q Consensus       246 ~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~s~d~~~l~~s~  291 (308)
                      +-   .|.+.+||....   +..+..+.+. +.-.|.|+||++++..+.
T Consensus       334 gF~nl~gni~i~~~~~r---f~~~~~~~~~-n~s~~~wspd~qF~~~~~  378 (561)
T COG5354         334 GFDNLQGNIEIFDPAGR---FKVAGAFNGL-NTSYCDWSPDGQFYDTDT  378 (561)
T ss_pred             cCCccccceEEeccCCc---eEEEEEeecC-CceEeeccCCceEEEecC
Confidence            54   467999998875   2344344432 233348999999987554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.25  E-value=0.00085  Score=54.76  Aligned_cols=196  Identities=12%  Similarity=0.042  Sum_probs=116.9

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEe-cCCCeeeccCCCcEEEEECCCCCCcccc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFA-NNTWGRNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s-~~g~~~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      .+.++.+....+.|..|+...+.           .......+  ...+++. +++..+.+..++ +.++|..+++.....
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~-----------~~~~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGE-----------VEVIDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLA   76 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTE-----------EEEEESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEE
T ss_pred             CCEEEEEEcCCCEEEEEECCCCe-----------EEEEecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEe
Confidence            46778888888999999987761           00000001  1157777 666555555544 566698777432211


Q ss_pred             cc---e-eeeeeeeeeeecCCce-EEeeCC--------CeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEE-Eee
Q 021744          104 NR---A-VIKTDILCRNWVQGNC-MYGEKC--------KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGS  169 (308)
Q Consensus       104 ~~---~-~~~~~~~~~~~~~~~~-~~g~~d--------~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s  169 (308)
                      ..   . .......+.+.++|.+ ++....        +.|..++.. + +.. .+...-.....++|+|+++.|+ +-+
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~-~~~-~~~~~~~~pNGi~~s~dg~~lyv~ds  153 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G-KVT-VVADGLGFPNGIAFSPDGKTLYVADS  153 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S-EEE-EEEEEESSEEEEEEETTSSEEEEEET
T ss_pred             eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C-eEE-EEecCcccccceEECCcchheeeccc
Confidence            11   1 2233777888999977 332222        567778877 4 332 2333456678999999998765 667


Q ss_pred             CCCcEEEEeCCCC-e-E--EEEE-e--CCC-eeE--EEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEE
Q 021744          170 KDETVRVWDCASG-Q-C--AGVI-N--LGG-EVG--CMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAV  237 (308)
Q Consensus       170 ~dg~v~~wd~~~~-~-~--~~~~-~--~~~-~v~--~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~  237 (308)
                      ..+.|..+++... . .  ...+ .  ... ...  ++-.+|++.++.. .+.|.++|.+ ++.+ .+......+++++|
T Consensus       154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred             ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence            7888999998632 2 1  1222 2  221 222  3346777766654 8899999988 6655 45544458999999


Q ss_pred             e
Q 021744          238 G  238 (308)
Q Consensus       238 ~  238 (308)
                      .
T Consensus       233 g  233 (246)
T PF08450_consen  233 G  233 (246)
T ss_dssp             E
T ss_pred             E
Confidence            5

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.23  E-value=0.00013  Score=64.15  Aligned_cols=75  Identities=15%  Similarity=0.145  Sum_probs=54.2

Q ss_pred             eeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeE
Q 021744          107 VIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC  184 (308)
Q Consensus       107 ~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~  184 (308)
                      ....+.+|+++|+... +.|+.||.|.+||...+.   ..+....-.++.++|+|+|..++.|+..|.+.+||+.-...
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~---t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi  333 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV---TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI  333 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCe---eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence            3444778888888755 788888888888887652   22222345567888888888888888888888888775433

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.21  E-value=3e-05  Score=71.04  Aligned_cols=170  Identities=12%  Similarity=0.120  Sum_probs=114.1

Q ss_pred             eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEe
Q 021744           81 RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLP  159 (308)
Q Consensus        81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~  159 (308)
                      +-|+....+..+|+.+.+.......... .+..++.  .++. ..|...|+|.+-|+++. +.++++..|++.|.++...
T Consensus       151 i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~-~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~-~~iht~~aHs~siSDfDv~  226 (1118)
T KOG1275|consen  151 IMGGLQEKLIHIDLNTEKETRTTNVSAS-GVTIMRY--NNRNLFCGDTRGTVFLRDPNSF-ETIHTFDAHSGSISDFDVQ  226 (1118)
T ss_pred             eecchhhheeeeecccceeeeeeeccCC-ceEEEEe--cCcEEEeecccceEEeecCCcC-ceeeeeeccccceeeeecc
Confidence            6666667777788866543321111111 1332222  2333 67888999999999998 8999999999999887764


Q ss_pred             CCCCEEEEeeC---------CCcEEEEeCCCCeEEEEEeCC-C-eeEEEEcC--CCEEEEEcCCcEEEEEcCCC-ce--e
Q 021744          160 SGSDKLYSGSK---------DETVRVWDCASGQCAGVINLG-G-EVGCMISE--GPWIFIGVTNFVKAWNTQTN-TD--L  223 (308)
Q Consensus       160 ~~~~~l~s~s~---------dg~v~~wd~~~~~~~~~~~~~-~-~v~~~~~~--~~~l~~~~d~~i~~wd~~~~-~~--~  223 (308)
                        |++|++|+.         |.-|++||++.-+.+..+... . ....+.|.  .+.++++..|+..+-|..+. .+  -
T Consensus       227 --GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~  304 (1118)
T KOG1275|consen  227 --GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAG  304 (1118)
T ss_pred             --CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccc
Confidence              789999985         556899999987776666522 2 22223333  34444556899998884332 11  1


Q ss_pred             --eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEc
Q 021744          224 --SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF  256 (308)
Q Consensus       224 --~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~  256 (308)
                        .+......+..++++++  .++.|..+|.|.+|.-
T Consensus       305 ~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  305 VKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             eeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence              22223445899999988  9999999999999983

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.19  E-value=9.3e-05  Score=64.35  Aligned_cols=173  Identities=12%  Similarity=0.073  Sum_probs=118.5

Q ss_pred             eeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeC-----------CCcEEEEeC
Q 021744          111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-----------DETVRVWDC  179 (308)
Q Consensus       111 ~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-----------dg~v~~wd~  179 (308)
                      -..+.|+|.|.+++.-.-.-|.+|--.+- ..++.+. |+ .|.-+.|+|..++|+|-+.           ...++|||+
T Consensus       213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f-~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQGIALWGGESF-DRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEeccceeeecCccH-HHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            66789999999988888888999976655 4555554 54 5788999999999998764           257899999


Q ss_pred             CCCeEEEEEeC---CCe---eEEEEcCCCEEEEEcCCcEEEEEcCCCceeeee-CCCCCEEEEEEeCC--EEEEEcC--C
Q 021744          180 ASGQCAGVINL---GGE---VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS-GPVGQVYAMAVGND--LLFAGTQ--D  248 (308)
Q Consensus       180 ~~~~~~~~~~~---~~~---v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~-~~~~~v~~~~~~~~--~l~~g~~--d  248 (308)
                      .+|...+.+..   ...   +...+.|++++|--....|.+|+..+..++..+ -.-..|....|+|.  +||-=+.  +
T Consensus       290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~  369 (698)
T KOG2314|consen  290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN  369 (698)
T ss_pred             cccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence            99999988873   222   223357899998655688999998876665222 23456888999998  4443221  1


Q ss_pred             ---CeEEEEEcCCCCcccccceeccccCC-CeEEEEecCCCeEEEe
Q 021744          249 ---GAILAWKFNVTTNCFEPAASLKVHTD-SNRAHFSRDVTSLLGS  290 (308)
Q Consensus       249 ---g~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~s~d~~~l~~s  290 (308)
                         -++.+..+.++    +.+++-.-+.- .+...|-.+|.+|..-
T Consensus       370 ~~parvtL~evPs~----~~iRt~nlfnVsDckLhWQk~gdyLcvk  411 (698)
T KOG2314|consen  370 NIPARVTLMEVPSK----REIRTKNLFNVSDCKLHWQKSGDYLCVK  411 (698)
T ss_pred             CCcceEEEEecCcc----ceeeeccceeeeccEEEeccCCcEEEEE
Confidence               24666666665    44444443322 2222777788887643

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=2.9e-05  Score=65.74  Aligned_cols=192  Identities=11%  Similarity=0.035  Sum_probs=134.3

Q ss_pred             eeeeeeeeeeeecCCceEEeeCCCeEEEEEcCC--CceeeeEeeCcccceEEEEEeCCCCEEEEeeC-CCcEEEEeCCCC
Q 021744          106 AVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGD--GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCASG  182 (308)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~v~~wd~~~~  182 (308)
                      .|...+.-|......-.++++.||.++.|-...  +.+.+..+..|-..|.+++.+-++.++.|.+. |..++++|+++.
T Consensus         7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            345555555555555568999999999998654  33566677789999999999999999999887 999999999987


Q ss_pred             eEEEEEe---CCCeeEEEEcCC---CEEEEEc--CCcEEEEEcCCCcee---eeeCCCCCEEEEEEeCC--EEEEEcCCC
Q 021744          183 QCAGVIN---LGGEVGCMISEG---PWIFIGV--TNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGND--LLFAGTQDG  249 (308)
Q Consensus       183 ~~~~~~~---~~~~v~~~~~~~---~~l~~~~--d~~i~~wd~~~~~~~---~~~~~~~~v~~~~~~~~--~l~~g~~dg  249 (308)
                      ..+.-++   .++.+.++...|   ..++++.  ++.+.++|-....+.   .-.-|..+|..+.+.+.  .+++....|
T Consensus        87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g  166 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG  166 (558)
T ss_pred             chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence            6665444   455555555554   2455554  889999998876533   44568999999999987  788888899


Q ss_pred             eEEEEEcCCCCcc--ccccee---------ccccCCCeEE-EEecCCCeEEEee-ceEEEE
Q 021744          250 AILAWKFNVTTNC--FEPAAS---------LKVHTDSNRA-HFSRDVTSLLGSV-SFIMFI  297 (308)
Q Consensus       250 ~i~iwd~~~~~~~--~~~~~~---------~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~  297 (308)
                      .|.-|.....-..  .+....         +........+ .|+|++..+..-. +..+++
T Consensus       167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~  227 (558)
T KOG0882|consen  167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRG  227 (558)
T ss_pred             eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEE
Confidence            9999998741000  011111         1122334455 9999999887544 444444

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.14  E-value=9.1e-05  Score=68.03  Aligned_cols=173  Identities=14%  Similarity=0.097  Sum_probs=120.9

Q ss_pred             ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEEEc
Q 021744          121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCMIS  199 (308)
Q Consensus       121 ~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~~~  199 (308)
                      ..+.|+.-..+..+|+++. +..+...-....|.-|..  +++++.+|...|+|.+-|.++.+.+.++. |.+.+..+.-
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~-~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv  225 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTE-KETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV  225 (1118)
T ss_pred             ceeecchhhheeeeecccc-eeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence            3456666677778898887 444444433444666654  46799999999999999999999999998 8888888887


Q ss_pred             CCCEEEEEc----------CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCccccc
Q 021744          200 EGPWIFIGV----------TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEP  265 (308)
Q Consensus       200 ~~~~l~~~~----------d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~  265 (308)
                      .|+.|++++          |.-|+|||+|....+ .+.-+.++ .-+.|.|.   .++.++..|...+-|..+-.+-..-
T Consensus       226 ~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~  304 (1118)
T KOG1275|consen  226 QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAG  304 (1118)
T ss_pred             cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccc
Confidence            788777542          345899999988766 33333333 44678887   8899999999999994332210012


Q ss_pred             ceeccccCCCeEE-EEecCCCeEEEee---ceEEEE
Q 021744          266 AASLKVHTDSNRA-HFSRDVTSLLGSV---SFIMFI  297 (308)
Q Consensus       266 ~~~~~~~~~~v~~-~~s~d~~~l~~s~---s~~i~~  297 (308)
                      +..+......+.. .+|+.++.|+..-   -+.+|.
T Consensus       305 ~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  305 VKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            2333344555777 9999999888443   344444

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.14  E-value=0.0053  Score=55.44  Aligned_cols=154  Identities=13%  Similarity=0.119  Sum_probs=91.6

Q ss_pred             eEEEEEcCCCceeeeEeeCcccceE------EEEEe----CCCC---EEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEE
Q 021744          130 FLHSWTVGDGFKLLTQLEGHQKVVS------GITLP----SGSD---KLYSGSKDETVRVWDCASGQCAGVINLGGEVGC  196 (308)
Q Consensus       130 ~i~iwd~~~~~~~~~~~~~h~~~v~------~~~~~----~~~~---~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~  196 (308)
                      .|.-+|++++ +.+..++.-.....      ...+.    -++.   .++.++.+|.+...|.++|+.+........-..
T Consensus       257 ~l~Ald~~tG-~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~  335 (488)
T cd00216         257 SIVALDADTG-KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMA  335 (488)
T ss_pred             eEEEEcCCCC-CEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccccc
Confidence            7899999999 56655542111110      01111    1232   578888999999999999999987753211011


Q ss_pred             EEcCCCEEEEE-------------------cCCcEEEEEcCCCcee-eeeCC--C------CC--EEEEEEeCCEEEEEc
Q 021744          197 MISEGPWIFIG-------------------VTNFVKAWNTQTNTDL-SLSGP--V------GQ--VYAMAVGNDLLFAGT  246 (308)
Q Consensus       197 ~~~~~~~l~~~-------------------~d~~i~~wd~~~~~~~-~~~~~--~------~~--v~~~~~~~~~l~~g~  246 (308)
                      ..+  ..++++                   .++.+.-.|+.+++.+ +....  .      .+  ...+....+.++.++
T Consensus       336 ~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~  413 (488)
T cd00216         336 YDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGA  413 (488)
T ss_pred             cCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEEC
Confidence            111  222221                   2578889999999887 32221  0      11  123445556888889


Q ss_pred             CCCeEEEEEcCCCCcccccceeccccCCCeEE---EEecCCCeEEEee
Q 021744          247 QDGAILAWKFNVTTNCFEPAASLKVHTDSNRA---HFSRDVTSLLGSV  291 (308)
Q Consensus       247 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~---~~s~d~~~l~~s~  291 (308)
                      .||.|+.+|..++    +.+-+.+.. ..+..   .|..+++..+++.
T Consensus       414 ~dG~l~ald~~tG----~~lW~~~~~-~~~~a~P~~~~~~g~~yv~~~  456 (488)
T cd00216         414 ADGYFRAFDATTG----KELWKFRTP-SGIQATPMTYEVNGKQYVGVM  456 (488)
T ss_pred             CCCeEEEEECCCC----ceeeEEECC-CCceEcCEEEEeCCEEEEEEE
Confidence            9999999999998    555555432 33333   3556776555443

The alignment model contains an 8-bladed beta-propeller.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.13  E-value=0.0025  Score=51.31  Aligned_cols=183  Identities=13%  Similarity=0.113  Sum_probs=106.4

Q ss_pred             eeecCCceEEeeCCCeEEEEEcCCCc-eeeeEeeCcc---cceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC
Q 021744          115 RNWVQGNCMYGEKCKFLHSWTVGDGF-KLLTQLEGHQ---KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL  190 (308)
Q Consensus       115 ~~~~~~~~~~g~~d~~i~iwd~~~~~-~~~~~~~~h~---~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~  190 (308)
                      ....+|..+..-.|..|.|-..++.. ..+.+..-.+   ..=+.++|+||+.+||.+...|+|+++|+.. ..+..+..
T Consensus         4 ~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p   82 (282)
T PF15492_consen    4 ALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPP   82 (282)
T ss_pred             eecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCc
Confidence            34566777777778888887766542 1222222222   2236799999999999999999999999885 44444441


Q ss_pred             --------CCeeEEE-Ec--------CCCEEEEEcCCcEEEEEcCCC--c----ee--eee-CCCCCEEEEEEeCC---E
Q 021744          191 --------GGEVGCM-IS--------EGPWIFIGVTNFVKAWNTQTN--T----DL--SLS-GPVGQVYAMAVGND---L  241 (308)
Q Consensus       191 --------~~~v~~~-~~--------~~~~l~~~~d~~i~~wd~~~~--~----~~--~~~-~~~~~v~~~~~~~~---~  241 (308)
                              ...+..+ +.        ..++|+....|.++-|-+..+  +    ..  .+. .+...|.++.++|.   +
T Consensus        83 ~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LL  162 (282)
T PF15492_consen   83 AMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLL  162 (282)
T ss_pred             ccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEE
Confidence                    1122322 11        235667778887776654322  1    11  222 24678999999998   4


Q ss_pred             EEEEcCCCe----------EEEEEcCCCCcccccceec------------------------c-ccCCCeEE-EEecCCC
Q 021744          242 LFAGTQDGA----------ILAWKFNVTTNCFEPAASL------------------------K-VHTDSNRA-HFSRDVT  285 (308)
Q Consensus       242 l~~g~~dg~----------i~iwd~~~~~~~~~~~~~~------------------------~-~~~~~v~~-~~s~d~~  285 (308)
                      ++.|+....          +..|.+-+..+-.+++...                        . .....|.- ..||||+
T Consensus       163 lVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~  242 (282)
T PF15492_consen  163 LVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS  242 (282)
T ss_pred             EEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCC
Confidence            444444332          5667654433211111111                        0 12334555 8899999


Q ss_pred             eEEEee-ceEEEEe
Q 021744          286 SLLGSV-SFIMFIG  298 (308)
Q Consensus       286 ~l~~s~-s~~i~~~  298 (308)
                      .|++.. ++.|.+|
T Consensus       243 ~La~ih~sG~lsLW  256 (282)
T PF15492_consen  243 LLACIHFSGSLSLW  256 (282)
T ss_pred             EEEEEEcCCeEEEE
Confidence            998543 4444443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.12  E-value=0.00016  Score=67.26  Aligned_cols=131  Identities=11%  Similarity=0.120  Sum_probs=92.9

Q ss_pred             CEEEE-eeCCCcEEEEeCCCCeEEEEEeCCC--eeEEEEcC-------CCEEEEE-cCCcEEEEEcCCCc--eee--e--
Q 021744          163 DKLYS-GSKDETVRVWDCASGQCAGVINLGG--EVGCMISE-------GPWIFIG-VTNFVKAWNTQTNT--DLS--L--  225 (308)
Q Consensus       163 ~~l~s-~s~dg~v~~wd~~~~~~~~~~~~~~--~v~~~~~~-------~~~l~~~-~d~~i~~wd~~~~~--~~~--~--  225 (308)
                      ++|+. ......|+-.|++.|+.+..+....  ++..+.|+       ..-.+.| +++.+..||.|-..  ++.  .  
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~  573 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ  573 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence            44433 3456789999999999999999433  35666553       2233444 48899999998643  221  1  


Q ss_pred             eCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEEE
Q 021744          226 SGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMFI  297 (308)
Q Consensus       226 ~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~  297 (308)
                      ........|++-+.+ +||.|+.+|.||+||--..    +....+.+-..+|.. ..+.||+|+++.|..-|.+
T Consensus       574 Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~----~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlL  643 (794)
T PF08553_consen  574 YSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGK----RAKTALPGLGDPIIGIDVTADGKWILATCKTYLLL  643 (794)
T ss_pred             cccCCCceEEEecCCceEEEEeCCCcEEeecccch----hhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEE
Confidence            123446788888888 9999999999999994332    444456677889999 9999999999998444433

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.11  E-value=0.0032  Score=52.00  Aligned_cols=214  Identities=14%  Similarity=0.079  Sum_probs=124.7

Q ss_pred             CceEEecCCC-eEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-ee-----ccCCCcEEEEECCCC-C
Q 021744           27 GLSTADTRQK-VCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RN-----NNFNNHSNNYRAGNS-K   98 (308)
Q Consensus        27 ~~~~s~s~d~-~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s-----~~~d~~i~vwd~~~~-~   98 (308)
                      ..+|-+-.-+ ...+||..++..    ......+....+.||    -.|||||++ .+     ....|.|-|||...+ +
T Consensus        18 ~avafaRRPG~~~~v~D~~~g~~----~~~~~a~~gRHFyGH----g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~   89 (305)
T PF07433_consen   18 EAVAFARRPGTFALVFDCRTGQL----LQRLWAPPGRHFYGH----GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR   89 (305)
T ss_pred             eEEEEEeCCCcEEEEEEcCCCce----eeEEcCCCCCEEecC----EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence            4455555544 556788877611    001112334455567    699999998 44     334578999999722 2


Q ss_pred             CcccccceeeeeeeeeeeecCCc-eEEe------------------eCCCeEEEEEcCCCceeeeE--e--eCcccceEE
Q 021744           99 NSNINNRAVIKTDILCRNWVQGN-CMYG------------------EKCKFLHSWTVGDGFKLLTQ--L--EGHQKVVSG  155 (308)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g------------------~~d~~i~iwd~~~~~~~~~~--~--~~h~~~v~~  155 (308)
                      .+ .....+.-....+.+.|++. ++.+                  ..+..+...|..++ +++.+  +  .-|+-.|..
T Consensus        90 ri-~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG-~ll~q~~Lp~~~~~lSiRH  167 (305)
T PF07433_consen   90 RI-GEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG-ALLEQVELPPDLHQLSIRH  167 (305)
T ss_pred             EE-eEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC-ceeeeeecCccccccceee
Confidence            11 11122222245566777773 3221                  22445566677777 55555  4  347889999


Q ss_pred             EEEeCCCCEEEEeeCCCc-----EEEEeCCCCeEEEEEe--------CCCeeEEE--EcCCCEEEEEc--CCcEEEEEcC
Q 021744          156 ITLPSGSDKLYSGSKDET-----VRVWDCASGQCAGVIN--------LGGEVGCM--ISEGPWIFIGV--TNFVKAWNTQ  218 (308)
Q Consensus       156 ~~~~~~~~~l~s~s~dg~-----v~~wd~~~~~~~~~~~--------~~~~v~~~--~~~~~~l~~~~--d~~i~~wd~~  218 (308)
                      +++.+++..++..-..|.     -.+.-.+.++.+..+.        ...-+.++  ..++.++++++  .+.+.+||..
T Consensus       168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~  247 (305)
T PF07433_consen  168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAA  247 (305)
T ss_pred             EEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECC
Confidence            999999887777665552     1122223333343333        22334444  45777888776  7799999999


Q ss_pred             CCceeeeeCCCCCEEEEEEeCC-EEEEEcCCCeEE
Q 021744          219 TNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAIL  252 (308)
Q Consensus       219 ~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~  252 (308)
                      +++.+....- ..+..++..++ ++++.+. |.+.
T Consensus       248 tg~~~~~~~l-~D~cGva~~~~~f~~ssG~-G~~~  280 (305)
T PF07433_consen  248 TGRLLGSVPL-PDACGVAPTDDGFLVSSGQ-GQLI  280 (305)
T ss_pred             CCCEeecccc-CceeeeeecCCceEEeCCC-ccEE
Confidence            9998843322 24667777777 5665544 4433

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=0.00068  Score=62.15  Aligned_cols=185  Identities=15%  Similarity=0.232  Sum_probs=118.0

Q ss_pred             ecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccc-eEEEEEeCCCCEEEEeeCCCc-----EEEEeCCCC------eE
Q 021744          117 WVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV-VSGITLPSGSDKLYSGSKDET-----VRVWDCASG------QC  184 (308)
Q Consensus       117 ~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~s~dg~-----v~~wd~~~~------~~  184 (308)
                      +..+..+.|+.+|.|.+.+-  ..+.++.++.+... |..+-...+..+|++.++|+.     +++|+++.-      ++
T Consensus        33 s~~~~vvigt~~G~V~~Ln~--s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c  110 (933)
T KOG2114|consen   33 SSTGSVVIGTADGRVVILNS--SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQC  110 (933)
T ss_pred             CCCceEEEeeccccEEEecc--cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcce
Confidence            34446688999999888763  32455778888777 555544444578888888764     899998742      33


Q ss_pred             EEE---EeC-----CCeeEEE--EcCCCEEEEEc-CCcEEEEEcCC----Ccee-eeeCCCCCEEEEEEeCC--E-EEEE
Q 021744          185 AGV---INL-----GGEVGCM--ISEGPWIFIGV-TNFVKAWNTQT----NTDL-SLSGPVGQVYAMAVGND--L-LFAG  245 (308)
Q Consensus       185 ~~~---~~~-----~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~----~~~~-~~~~~~~~v~~~~~~~~--~-l~~g  245 (308)
                      +..   +.+     +.++.++  +.+-+.+++|. +|.|.++.-.-    +... .......+|+.+.+..+  . ++++
T Consensus       111 ~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~  190 (933)
T KOG2114|consen  111 LYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVA  190 (933)
T ss_pred             eeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEE
Confidence            422   221     2334444  45667788887 88888874221    1111 22234579999999877  3 3333


Q ss_pred             cCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEEEeecCceeEEe
Q 021744          246 TQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMFIGQNNKGVVCY  307 (308)
Q Consensus       246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~~~~~~~~~~~  307 (308)
                      + -..|.+|.+....   .....+..|+..++| +|++....++++++..++....++.-.||
T Consensus       191 T-t~~V~~y~l~gr~---p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cf  249 (933)
T KOG2114|consen  191 T-TEQVMLYSLSGRT---PSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCF  249 (933)
T ss_pred             e-cceeEEEEecCCC---cceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceee
Confidence            3 3479999998541   124557788889999 88876655776666677776666555555

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.10  E-value=0.0059  Score=55.15  Aligned_cols=228  Identities=13%  Similarity=0.048  Sum_probs=123.2

Q ss_pred             CCceEEecCCCeEEEeecCCCCC-CCCCcccccCCCCCCccccccceeEEecCCCeeeccCCCcEEEEECCCCCCccccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNR-FPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINN  104 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~  104 (308)
                      +..+..++.++.++-.|..+++. +.............+..   ...+++..++..+.++.++.|.-+|.++++.+-...
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~---~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~  137 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVV---NRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFG  137 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccc---cCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence            45566777889999999888732 11111000000000000   001122111333777889999999998887553222


Q ss_pred             ceee----eeee-eeeeecCCceEEee---------CCCeEEEEEcCCCceeeeEeeCccc-------------------
Q 021744          105 RAVI----KTDI-LCRNWVQGNCMYGE---------KCKFLHSWTVGDGFKLLTQLEGHQK-------------------  151 (308)
Q Consensus       105 ~~~~----~~~~-~~~~~~~~~~~~g~---------~d~~i~iwd~~~~~~~~~~~~~h~~-------------------  151 (308)
                      ....    ..+. ...+. ++..+.++         .++.+..+|..++ +.+..++....                   
T Consensus       138 ~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g  215 (488)
T cd00216         138 NNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETG-KLLWRFYTTEPDPNAFPTWGPDRQMWGPGG  215 (488)
T ss_pred             CCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCC-ceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence            1111    0000 01111 23333332         4688999999999 56655543211                   


Q ss_pred             -ce-EEEEEeCCCCEEEEeeCCC------------------cEEEEeCCCCeEEEEEeCCCe-e-------E-EEE----
Q 021744          152 -VV-SGITLPSGSDKLYSGSKDE------------------TVRVWDCASGQCAGVINLGGE-V-------G-CMI----  198 (308)
Q Consensus       152 -~v-~~~~~~~~~~~l~s~s~dg------------------~v~~wd~~~~~~~~~~~~~~~-v-------~-~~~----  198 (308)
                       .+ ...++++.+..++.++.++                  .|.-.|+++++.+..++.... .       . .+.    
T Consensus       216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~  295 (488)
T cd00216         216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP  295 (488)
T ss_pred             CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence             11 1245555566777777665                  799999999999998873211 0       0 111    


Q ss_pred             cCCC---EEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCCEEEEE------------------cCCCeEEEEE
Q 021744          199 SEGP---WIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAG------------------TQDGAILAWK  255 (308)
Q Consensus       199 ~~~~---~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~~l~~g------------------~~dg~i~iwd  255 (308)
                      .++.   .++++. +|.+...|.++++.+ .....   ...++.+|+.+..+                  ..+|.+.-.|
T Consensus       296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD  372 (488)
T cd00216         296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD  372 (488)
T ss_pred             cCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence            2333   455665 899999999999988 32211   11233444522221                  2467888889


Q ss_pred             cCCCCc
Q 021744          256 FNVTTN  261 (308)
Q Consensus       256 ~~~~~~  261 (308)
                      +.+++.
T Consensus       373 ~~tG~~  378 (488)
T cd00216         373 PKTGKV  378 (488)
T ss_pred             CCCCcE
Confidence            888843

The alignment model contains an 8-bladed beta-propeller.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.07  E-value=0.00081  Score=61.07  Aligned_cols=218  Identities=10%  Similarity=0.062  Sum_probs=134.1

Q ss_pred             CCCCccccccceeEEecCCCeeeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC-------------ceEEee
Q 021744           60 LPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG-------------NCMYGE  126 (308)
Q Consensus        60 ~~~~~~gh~~~~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~g~  126 (308)
                      ++.++..|+..++.++|.|-.|-|+. ..|.+-|..+.|.+. ....|...+..+.|.|..             ..+++.
T Consensus         9 lpG~l~~sN~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~iq-sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD   86 (1062)
T KOG1912|consen    9 LPGPLSRSNRNAADWSPSGLIAYGSH-SLVSVVDSRSLQLIQ-SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD   86 (1062)
T ss_pred             CCCCCCcccccccccCccceEEEecC-ceEEEEehhhhhhhh-ccccCccceeEEEeccCCCchhccCccccceeEEecc
Confidence            34444555544789999997755543 357888887766553 333455567777776533             125677


Q ss_pred             CCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC---CC-CEEEEeeCCCcEEEEeCCCCeEEEEEeC-CCeeEEEEc--
Q 021744          127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS---GS-DKLYSGSKDETVRVWDCASGQCAGVINL-GGEVGCMIS--  199 (308)
Q Consensus       127 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~---~~-~~l~s~s~dg~v~~wd~~~~~~~~~~~~-~~~v~~~~~--  199 (308)
                      ..|.|.+||.... ..+..+..|.+++..++|-+   +. ..|+.-....++.+|+..+|+...+... .....|+..  
T Consensus        87 ~~GrIil~d~~~~-s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DP  165 (1062)
T KOG1912|consen   87 ISGRIILVDFVLA-SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDP  165 (1062)
T ss_pred             ccCcEEEEEehhh-hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCC
Confidence            7899999999988 66777888999999999865   33 4567777778999999999999988873 344455531  


Q ss_pred             -CCC-EEEEEcCCcEEEEEcCC-------Cceeee-eCCCC-------------------------CEEEEEEeCC--EE
Q 021744          200 -EGP-WIFIGVTNFVKAWNTQT-------NTDLSL-SGPVG-------------------------QVYAMAVGND--LL  242 (308)
Q Consensus       200 -~~~-~l~~~~d~~i~~wd~~~-------~~~~~~-~~~~~-------------------------~v~~~~~~~~--~l  242 (308)
                       +.+ +.+.|+.|.+.+-+.-.       ++...+ ..|.+                         ..-.++|+|.  .+
T Consensus       166 fd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~  245 (1062)
T KOG1912|consen  166 FDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI  245 (1062)
T ss_pred             CCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence             233 33345556554443211       111111 11111                         1123566776  33


Q ss_pred             EEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCC
Q 021744          243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDV  284 (308)
Q Consensus       243 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~  284 (308)
                      +.....+.+.++|++-.    .++....-..+.+.. .+-|+.
T Consensus       246 lfi~~prellv~dle~~----~~l~vvpier~~akfv~vlP~~  284 (1062)
T KOG1912|consen  246 LFITFPRELLVFDLEYE----CCLAVVPIERGGAKFVDVLPDP  284 (1062)
T ss_pred             EEEEeccceEEEcchhh----ceeEEEEeccCCcceeEeccCC
Confidence            33456678999999875    555555444443333 444544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.05  E-value=0.0013  Score=57.98  Aligned_cols=138  Identities=13%  Similarity=0.064  Sum_probs=81.6

Q ss_pred             eeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC
Q 021744          111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL  190 (308)
Q Consensus       111 ~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~  190 (308)
                      +..+.++|.++.+.-+.||...|+..... ....     .+.-...+|.+.+ .++.-....+|.++.--..+....++.
T Consensus        35 p~~ls~npngr~v~V~g~geY~iyt~~~~-r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~  107 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLVCGDGEYEIYTALAW-RNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKL  107 (443)
T ss_dssp             -SEEEE-TTSSEEEEEETTEEEEEETTTT-EEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-----
T ss_pred             CeeEEECCCCCEEEEEcCCEEEEEEccCC-cccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcC
Confidence            78889999999977788999999985443 1211     2344578898844 466666688899963223333345565


Q ss_pred             CCeeEEEEcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCC
Q 021744          191 GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       191 ~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~  258 (308)
                      +..+..++. |.+|...+++.|.+||..+++.+...... +|..+.|+++  +++..+.+ .+.|++...
T Consensus       108 ~~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~-~i~il~~~~  174 (443)
T PF04053_consen  108 PFSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKD-SIYILKYNL  174 (443)
T ss_dssp             SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred             CcccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence            555666666 88888888779999999999888333332 3899999998  77766654 777777554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.99  E-value=0.007  Score=50.71  Aligned_cols=191  Identities=13%  Similarity=0.067  Sum_probs=107.8

Q ss_pred             eeEEecCCCe---eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC--ceEEeeCCCeEEEEEcCCCceeeeE
Q 021744           71 AKRFANNTWG---RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQ  145 (308)
Q Consensus        71 ~i~~s~~g~~---~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~~~~~~~~~  145 (308)
                      ..+++.||+.   .-.+--.+|.|-|++.++.+.+.     ...-|....|.+  .+.+-+.||.+....+...-+..+.
T Consensus        99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei-----~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~  173 (342)
T PF06433_consen   99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI-----DTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK  173 (342)
T ss_dssp             GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE-----EGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred             ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee-----cCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence            5788888887   44555567888888666443211     112233334433  4467788899888888732122221


Q ss_pred             ----eeCcccce-EEEEEeCCCCEEEEeeCCCcEEEEeCCCCeE--EEEEeC-------------CCeeEEEEcCCCEEE
Q 021744          146 ----LEGHQKVV-SGITLPSGSDKLYSGSKDETVRVWDCASGQC--AGVINL-------------GGEVGCMISEGPWIF  205 (308)
Q Consensus       146 ----~~~h~~~v-~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~--~~~~~~-------------~~~v~~~~~~~~~l~  205 (308)
                          |..-.+++ ..-++...+..++--+.+|.|+--|+...+.  ...+..             .-+..++.+....|+
T Consensus       174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly  253 (342)
T PF06433_consen  174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY  253 (342)
T ss_dssp             EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred             eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence                11112222 2334455555666678899999988876542  222321             112334444444444


Q ss_pred             E----Ec-----CC--cEEEEEcCCCcee-eeeCCCCCEEEEEEeCC---EEE-EEcCCCeEEEEEcCCCCcccccceec
Q 021744          206 I----GV-----TN--FVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLF-AGTQDGAILAWKFNVTTNCFEPAASL  269 (308)
Q Consensus       206 ~----~~-----d~--~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~---~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~  269 (308)
                      +    +.     ++  .|.++|+.+++.+ ++. -..++.+|.++.+   +|+ ....++.+.+||..++    +++.++
T Consensus       254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG----k~~~~~  328 (342)
T PF06433_consen  254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP-LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG----KLVRSI  328 (342)
T ss_dssp             EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE-EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT------EEEEE
T ss_pred             EEecCCCCCCccCCceEEEEEECCCCeEEEEEe-CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC----cEEeeh
Confidence            3    21     22  5888899999888 333 2346779999987   554 4556899999999998    666666


Q ss_pred             cc
Q 021744          270 KV  271 (308)
Q Consensus       270 ~~  271 (308)
                      ..
T Consensus       329 ~~  330 (342)
T PF06433_consen  329 EQ  330 (342)
T ss_dssp             --
T ss_pred             hc
Confidence            53

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.96  E-value=1.1e-05  Score=73.80  Aligned_cols=172  Identities=15%  Similarity=0.164  Sum_probs=115.1

Q ss_pred             eeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCC--cEEEEeCCC-Ce
Q 021744          108 IKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE--TVRVWDCAS-GQ  183 (308)
Q Consensus       108 ~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg--~v~~wd~~~-~~  183 (308)
                      .....+++|+...+. +.|+..|.|+++++.++ .......+|..+|+-+.-+.+|.++++.+.-.  ...+|++.+ +.
T Consensus      1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG-~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~ 1179 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG-SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG 1179 (1516)
T ss_pred             ccceeeEEeecCCceEEeeeccceEEEEEccCc-cccccccccccccccccccCCcceeeeeccccCchHHHhccccccC
Confidence            344678888887766 88999999999999999 77888899999999999999998766554433  577999875 45


Q ss_pred             EEEEEeCCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-e-ee---CCCCCEEEEEEeCC-EEEEEcCCCeEEEEEc
Q 021744          184 CAGVINLGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-S-LS---GPVGQVYAMAVGND-LLFAGTQDGAILAWKF  256 (308)
Q Consensus       184 ~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~-~~---~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~  256 (308)
                      +...+.....+ .++..-+.-+.|. .....+||+.|+... + +.   +....-+...|+|. .|+.  .||  .+||+
T Consensus      1180 ~~Hsf~ed~~v-kFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndG--vLWDv 1254 (1516)
T KOG1832|consen 1180 PRHSFDEDKAV-KFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDG--VLWDV 1254 (1516)
T ss_pred             cccccccccee-ehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCc--eeeee
Confidence            55444422211 1122222333444 457889999998655 3 22   22234477889998 4442  333  47999


Q ss_pred             CCCCcccccceeccccCCCeEEEEecCCCeEEE
Q 021744          257 NVTTNCFEPAASLKVHTDSNRAHFSRDVTSLLG  289 (308)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~~~s~d~~~l~~  289 (308)
                      +..    +.++.|......+...|+|.|..++.
T Consensus      1255 R~~----~aIh~FD~ft~~~~G~FHP~g~eVII 1283 (1516)
T KOG1832|consen 1255 RIP----EAIHRFDQFTDYGGGGFHPSGNEVII 1283 (1516)
T ss_pred             ccH----HHHhhhhhheecccccccCCCceEEe
Confidence            986    66666665553333378888776653

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.95  E-value=0.0017  Score=58.40  Aligned_cols=110  Identities=12%  Similarity=0.055  Sum_probs=84.5

Q ss_pred             eEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceee----eE
Q 021744           72 KRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLL----TQ  145 (308)
Q Consensus        72 i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~----~~  145 (308)
                      -++...+++ +.|+.-|.+.+|+...++.......+....+..+..++...+ +.|+..|.|.++.++......    ..
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~  118 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP  118 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence            456777888 999999999999998887665555444444556666776666 788899999999887642111    11


Q ss_pred             e-eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744          146 L-EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       146 ~-~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~  181 (308)
                      . +.|+..|++++|++++..+++|...|+|.+-.+.+
T Consensus       119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            1 23788999999999999999999999999988876

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.93  E-value=0.0052  Score=54.32  Aligned_cols=207  Identities=10%  Similarity=0.029  Sum_probs=103.4

Q ss_pred             eeEEecCCCeeeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcc
Q 021744           71 AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ  150 (308)
Q Consensus        71 ~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~  150 (308)
                      .+.++|+|+.+....||.-.|+.....     .. ...+......|...+.+++-.....|.++.--+. +....++. .
T Consensus        37 ~ls~npngr~v~V~g~geY~iyt~~~~-----r~-k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~-~~~k~i~~-~  108 (443)
T PF04053_consen   37 SLSHNPNGRFVLVCGDGEYEIYTALAW-----RN-KAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKN-EVVKSIKL-P  108 (443)
T ss_dssp             EEEE-TTSSEEEEEETTEEEEEETTTT-----EE-EEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE--TT------S
T ss_pred             eEEECCCCCEEEEEcCCEEEEEEccCC-----cc-cccCceeEEEEecCccEEEEECCCeEEEEEcCcc-ccceEEcC-C
Confidence            799999999944466777778773111     11 1223344556667777777777888999632222 12222321 1


Q ss_pred             cceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEEEEcCCcEEEEEcCCC--------
Q 021744          151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTN--------  220 (308)
Q Consensus       151 ~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~--------  220 (308)
                      ..+..+-.   |.+|...+.+ .|.+||+++++.+..+.... +..+  .+++++++..++..+.+++....        
T Consensus       109 ~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~  183 (443)
T PF04053_consen  109 FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEE  183 (443)
T ss_dssp             S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTT
T ss_pred             cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEEecchhccccccc
Confidence            12233322   7767666554 89999999999999998765 3433  46688999888778888765443        


Q ss_pred             ----ceeeeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceE
Q 021744          221 ----TDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFI  294 (308)
Q Consensus       221 ----~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~  294 (308)
                          ....+..-...|.+.+|..+ ++.+.. . .++.  +..+..  ..+..+   ..++.. .+.+..        ..
T Consensus       184 g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~-~-~lkY--l~~Ge~--~~i~~l---d~~~yllgy~~~~--------~~  246 (443)
T PF04053_consen  184 GVEDAFELIHEISERIKSGCWVEDCFIYTTS-N-HLKY--LVNGET--GIIAHL---DKPLYLLGYLPKE--------NR  246 (443)
T ss_dssp             B-GGGEEEEEEE-S--SEEEEETTEEEEE-T-T-EEEE--EETTEE--EEEEE----SS--EEEEEETTT--------TE
T ss_pred             CchhceEEEEEecceeEEEEEEcCEEEEEcC-C-eEEE--EEcCCc--ceEEEc---CCceEEEEEEccC--------CE
Confidence                22233333567888999888 444443 3 6665  443321  222222   234444 444432        35


Q ss_pred             EEEeecCceeEEe
Q 021744          295 MFIGQNNKGVVCY  307 (308)
Q Consensus       295 i~~~~~~~~~~~~  307 (308)
                      +|....+..+.+|
T Consensus       247 ly~~Dr~~~v~~~  259 (443)
T PF04053_consen  247 LYLIDRDGNVISY  259 (443)
T ss_dssp             EEEE-TT--EEEE
T ss_pred             EEEEECCCCEEEE
Confidence            6666666666554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.92  E-value=0.011  Score=57.29  Aligned_cols=211  Identities=10%  Similarity=-0.011  Sum_probs=123.2

Q ss_pred             eeEEecCCCe-eeccCCCcEEEE----ECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEE----EcCCC-
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNY----RAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSW----TVGDG-  139 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iw----d~~~~-  139 (308)
                      ++.+-++... +.+..+|.|-+.    +.....  ..........+.+++|+||+.. +....++++.+-    |+-.. 
T Consensus        80 s~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~--~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~  157 (928)
T PF04762_consen   80 SFQYLADSESLCIALASGDIILVREDPDPDEDE--IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEV  157 (928)
T ss_pred             EEEeccCCCcEEEEECCceEEEEEccCCCCCce--eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEe
Confidence            6777888887 888889989888    433222  1233445556999999999976 555555665543    22100 


Q ss_pred             --------c-eee--------eEeeC------------------------cccceEEEEEeCCCCEEEEeeC---C---C
Q 021744          140 --------F-KLL--------TQLEG------------------------HQKVVSGITLPSGSDKLYSGSK---D---E  172 (308)
Q Consensus       140 --------~-~~~--------~~~~~------------------------h~~~v~~~~~~~~~~~l~s~s~---d---g  172 (308)
                              . +.+        ..|.|                        +.+.-..++|-.||+++|..+.   .   .
T Consensus       158 ~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R  237 (928)
T PF04762_consen  158 PLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRR  237 (928)
T ss_pred             ecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCcee
Confidence                    0 000        01111                        2224457889999999987764   2   5


Q ss_pred             cEEEEeCCCCeEEEEEeC-C--CeeEEEEcCCCEEEEEc---C-CcEEEEEcCCCcee--e--eeCCCCCEEEEEEeCC-
Q 021744          173 TVRVWDCASGQCAGVINL-G--GEVGCMISEGPWIFIGV---T-NFVKAWNTQTNTDL--S--LSGPVGQVYAMAVGND-  240 (308)
Q Consensus       173 ~v~~wd~~~~~~~~~~~~-~--~~v~~~~~~~~~l~~~~---d-~~i~~wd~~~~~~~--~--~~~~~~~v~~~~~~~~-  240 (308)
                      .+++|+-+ |+...+... .  ...-+.-|.|.+|++..   + ..|.+|.-+..+.-  .  +......|..+.|+++ 
T Consensus       238 ~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds  316 (928)
T PF04762_consen  238 VIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDS  316 (928)
T ss_pred             EEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCC
Confidence            78999855 654444331 1  11223358899999754   2 36777764433222  2  2234568999999999 


Q ss_pred             -EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEEEEecCCC
Q 021744          241 -LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRAHFSRDVT  285 (308)
Q Consensus       241 -~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~s~d~~  285 (308)
                       .||.-..| .|.+|-..+...-.+....+..........|+|...
T Consensus       317 ~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p  361 (928)
T PF04762_consen  317 EILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP  361 (928)
T ss_pred             CEEEEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC
Confidence             77765555 499999887643222222222222222237777543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=0.00038  Score=58.35  Aligned_cols=158  Identities=13%  Similarity=0.132  Sum_probs=98.6

Q ss_pred             EEEEEcCCCceeeeEeeCcccceEEEEEeCCCC-EEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEE--c-CCCEEEE
Q 021744          131 LHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI--S-EGPWIFI  206 (308)
Q Consensus       131 i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~  206 (308)
                      ++..+..+- +...-+.+|...|.+++|+|..+ ++..++.+.+|++.|+++.-.+..+.....+.+.+  - +..++.+
T Consensus       175 v~~l~~~~f-kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDF-KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCc-chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEE
Confidence            555655555 44556778889999999999776 78999999999999999999998888666665442  2 3556778


Q ss_pred             Ec-CCcEEEEEcCCCcee--eeeC--CCCCEEEEEEeC------C--EEEEEcCCCeEEEEEcCCCCcccccceeccccC
Q 021744          207 GV-TNFVKAWNTQTNTDL--SLSG--PVGQVYAMAVGN------D--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT  273 (308)
Q Consensus       207 ~~-d~~i~~wd~~~~~~~--~~~~--~~~~v~~~~~~~------~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~  273 (308)
                      |. +|.|.+||++..+-.  .+.+  ...+|..++.-+      .  +++....  ....|.+.-....+.++.++....
T Consensus       254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG  331 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPG  331 (463)
T ss_pred             eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCc
Confidence            87 899999999976533  2222  233454444322      2  3443333  355676654333223333343322


Q ss_pred             CCeEEEEecCCCeEEEee
Q 021744          274 DSNRAHFSRDVTSLLGSV  291 (308)
Q Consensus       274 ~~v~~~~s~d~~~l~~s~  291 (308)
                      ..+...+.+-...++.+.
T Consensus       332 ~cismqy~~~snh~l~ty  349 (463)
T KOG1645|consen  332 ICISMQYHGVSNHLLLTY  349 (463)
T ss_pred             ceeeeeecCccceEEEEe
Confidence            223335555445555544

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.87  E-value=0.00049  Score=62.40  Aligned_cols=145  Identities=14%  Similarity=0.124  Sum_probs=105.5

Q ss_pred             eeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCC------------CEEEEeeCCCcEEEEe
Q 021744          111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS------------DKLYSGSKDETVRVWD  178 (308)
Q Consensus       111 ~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~------------~~l~s~s~dg~v~~wd  178 (308)
                      -..+.+++.|.+++|+. ..|.+-|..+. +.++.++.|+..|+.+.|.|..            -.++++...|.|.+||
T Consensus        18 ~~A~Dw~~~GLiAygsh-slV~VVDs~s~-q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d   95 (1062)
T KOG1912|consen   18 RNAADWSPSGLIAYGSH-SLVSVVDSRSL-QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD   95 (1062)
T ss_pred             ccccccCccceEEEecC-ceEEEEehhhh-hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence            45677888888888775 56778898888 8899999999999999997631            2467888889999999


Q ss_pred             CCCCeEEEEEe-CCCeeEEE--E---cCC-CEEE-EEcCCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC---EEEEEc
Q 021744          179 CASGQCAGVIN-LGGEVGCM--I---SEG-PWIF-IGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGT  246 (308)
Q Consensus       179 ~~~~~~~~~~~-~~~~v~~~--~---~~~-~~l~-~~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~---~l~~g~  246 (308)
                      ...+..+..++ +..++..+  .   .+. .+|+ .....++.+|+..+|+.. ..........|+.+.|-   .+..-+
T Consensus        96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~  175 (1062)
T KOG1912|consen   96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG  175 (1062)
T ss_pred             ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence            99988887777 34444433  1   233 2333 455889999999999988 45444456666888774   555555


Q ss_pred             CCCeEEEEEcC
Q 021744          247 QDGAILAWKFN  257 (308)
Q Consensus       247 ~dg~i~iwd~~  257 (308)
                      ..|.+.+-+.-
T Consensus       176 s~g~vl~~~~l  186 (1062)
T KOG1912|consen  176 SKGFVLSCKDL  186 (1062)
T ss_pred             cCceEEEEecc
Confidence            56777766643

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=0.0013  Score=55.35  Aligned_cols=72  Identities=8%  Similarity=-0.088  Sum_probs=54.4

Q ss_pred             eeEEecCCC-e-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeee
Q 021744           71 AKRFANNTW-G-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLT  144 (308)
Q Consensus        71 ~i~~s~~g~-~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~  144 (308)
                      .++|+|... . ..++.+++|+|.|+++....  ........+++|+|..+...  ..|...|.|.+||++....++.
T Consensus       198 dlafSp~~~GLl~~asl~nkiki~dlet~~~v--ssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~  273 (463)
T KOG1645|consen  198 DLAFSPFNEGLLGLASLGNKIKIMDLETSCVV--SSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLM  273 (463)
T ss_pred             hhccCccccceeeeeccCceEEEEecccceee--eheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCCchHh
Confidence            899999877 4 89999999999999876443  22333366899999888743  5677899999999986543333

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.84  E-value=0.0029  Score=58.26  Aligned_cols=185  Identities=9%  Similarity=0.036  Sum_probs=116.4

Q ss_pred             eEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC-ce-EEeeCC-C----eEEEEEcCCCc---
Q 021744           72 KRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG-NC-MYGEKC-K----FLHSWTVGDGF---  140 (308)
Q Consensus        72 i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~d-~----~i~iwd~~~~~---  140 (308)
                      -++++.+.. |.|+.+|.|.+.+-  ........+.+...+....+..++ .+ ++-++| +    .+++|+++...   
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~--s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNS--SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEecc--cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            467777777 99999997766653  332222333444432222223333 22 333332 2    69999986321   


Q ss_pred             --eee--eEeeC-----cccceEEEEEeCCCCEEEEeeCCCcEEEEeCC--CC---eEEEEEeCCCeeEEEE--cCCCE-
Q 021744          141 --KLL--TQLEG-----HQKVVSGITLPSGSDKLYSGSKDETVRVWDCA--SG---QCAGVINLGGEVGCMI--SEGPW-  203 (308)
Q Consensus       141 --~~~--~~~~~-----h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~--~~---~~~~~~~~~~~v~~~~--~~~~~-  203 (308)
                        +.+  ..+..     .+.++.+++++.+-+.++.|-.+|.|.++.-.  ..   +.........+++.+.  .+++. 
T Consensus       107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~  186 (933)
T KOG2114|consen  107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV  186 (933)
T ss_pred             CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence              223  11222     35678899999998999999999999998422  11   2222223567788773  45554 


Q ss_pred             EEEEcCCcEEEEEcCCCcee--eeeCCCCCEEEEEEeCC-E-EEEEcCCCeEEEEEcCCC
Q 021744          204 IFIGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND-L-LFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       204 l~~~~d~~i~~wd~~~~~~~--~~~~~~~~v~~~~~~~~-~-l~~g~~dg~i~iwd~~~~  259 (308)
                      +++.....|.+|.+....+.  .+..|...++|..+++. . +++++ ...+.+|+....
T Consensus       187 lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~  245 (933)
T KOG2114|consen  187 LFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR  245 (933)
T ss_pred             EEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc
Confidence            66777888999998855522  57788889999999987 3 44443 458999998865

>smart00320 WD40 WD40 repeats

Probab=97.83  E-value=7.2e-05  Score=40.70  Aligned_cols=38  Identities=34%  Similarity=0.658  Sum_probs=34.0

Q ss_pred             eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 021744          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (308)
Q Consensus       141 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd  178 (308)
                      +....+..|...|.++.|++++..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45667778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.78  E-value=3.1e-05  Score=70.89  Aligned_cols=145  Identities=17%  Similarity=0.260  Sum_probs=102.0

Q ss_pred             eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc--CC-cEEE
Q 021744          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV--TN-FVKA  214 (308)
Q Consensus       141 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~--d~-~i~~  214 (308)
                      +..+.+..|....+|++|+.+.++|+.|+-.|.|+++++.+|....... |+..++-+  +.+|..+++++  .. -..+
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence            4566778899999999999999999999999999999999999888887 78888877  45677666433  33 6689


Q ss_pred             EEcCCC-cee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE
Q 021744          215 WNTQTN-TDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG  289 (308)
Q Consensus       215 wd~~~~-~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~  289 (308)
                      |++..- ... ++.    .-.++.|+..  .-+.|+.-....+||+.+...+...+....+....-++ .|+|+.++++-
T Consensus      1172 W~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred             hccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence            998752 222 222    3356788876  33445555689999999984321211111222333366 99999887773

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.78  E-value=0.012  Score=50.19  Aligned_cols=169  Identities=11%  Similarity=0.139  Sum_probs=103.0

Q ss_pred             CeEEEEEcCCCceeeeEeeC-cccceEEEE---EeCC----CCEEEEeeC----------CCcEEEEeCCCC-----e--
Q 021744          129 KFLHSWTVGDGFKLLTQLEG-HQKVVSGIT---LPSG----SDKLYSGSK----------DETVRVWDCASG-----Q--  183 (308)
Q Consensus       129 ~~i~iwd~~~~~~~~~~~~~-h~~~v~~~~---~~~~----~~~l~s~s~----------dg~v~~wd~~~~-----~--  183 (308)
                      ..|++.|..+. +.+.++.- ....+.+++   +..+    .++++.|..          .|.|.++++...     +  
T Consensus         2 s~i~l~d~~~~-~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~   80 (321)
T PF03178_consen    2 SSIRLVDPTTF-EVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK   80 (321)
T ss_dssp             -EEEEEETTTS-SEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred             cEEEEEeCCCC-eEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence            35788888777 44444432 123344443   3322    456666643          288999999984     2  


Q ss_pred             EEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEEcCCCc-ee--eeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcCCCC
Q 021744          184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNT-DL--SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTT  260 (308)
Q Consensus       184 ~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~-~~--~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~  260 (308)
                      .+.....++++.++.+-+..|+++..+.|.+|++...+ ..  ........+.++....++++.|.....+.++.+....
T Consensus        81 ~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~  160 (321)
T PF03178_consen   81 LIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEEN  160 (321)
T ss_dssp             EEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTT
T ss_pred             EEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccC
Confidence            22333477889888665666888889999999998887 55  2333344889999888888899988888888665432


Q ss_pred             cccccceecc--ccCCCeEE-EEecCCCeEEEee-ceEEEEeecC
Q 021744          261 NCFEPAASLK--VHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQNN  301 (308)
Q Consensus       261 ~~~~~~~~~~--~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~~~  301 (308)
                         ..+..+.  .....+.+ .|-+|++.++++- ...+++...+
T Consensus       161 ---~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  161 ---NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             ---E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             ---CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence               2222222  23445666 7775665555443 6666655543

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.73  E-value=0.0037  Score=55.31  Aligned_cols=73  Identities=14%  Similarity=0.141  Sum_probs=56.6

Q ss_pred             CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCee--EEEEcCCCEEEEEc-CCcEEEEEcCCCc
Q 021744          148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIGV-TNFVKAWNTQTNT  221 (308)
Q Consensus       148 ~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~-d~~i~~wd~~~~~  221 (308)
                      ..+..|.+++++|+.+.++.|..||+|.+||...+..... +..-..  .+..|+|.++++|+ .|.+.+||+.-..
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            3678999999999999999999999999999887644332 222222  23358899999888 6899999987554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.71  E-value=0.009  Score=57.86  Aligned_cols=186  Identities=11%  Similarity=0.042  Sum_probs=108.0

Q ss_pred             eeEEecCCCe-eeccC----C--CcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeC----CCeEEEEEcCCC
Q 021744           71 AKRFANNTWG-RNNNF----N--NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEK----CKFLHSWTVGDG  139 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~----d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----d~~i~iwd~~~~  139 (308)
                      .|+|-.||.+ |+.+.    +  ..+|||+.+ |+...... ...+--..++|-|.|+.+++..    ...|.+|.-+..
T Consensus       214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGL  291 (928)
T PF04762_consen  214 RISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGL  291 (928)
T ss_pred             EEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCc
Confidence            7899999999 65553    2  579999986 43221122 2222255678999998755443    245666664433


Q ss_pred             ceeeeEee--CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeE--EEEEe--CCCeeEEE-E-cC-CCEEEE-EcC
Q 021744          140 FKLLTQLE--GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC--AGVIN--LGGEVGCM-I-SE-GPWIFI-GVT  209 (308)
Q Consensus       140 ~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~--~~~~~--~~~~v~~~-~-~~-~~~l~~-~~d  209 (308)
                      +.--..++  .....|..+.|++++..|+..-.|. |.+|...+..-  .+.+.  ....+..+ | +. ...|.. ..+
T Consensus       292 rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~  370 (928)
T PF04762_consen  292 RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSN  370 (928)
T ss_pred             EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecC
Confidence            21122222  3467899999999999998877665 99998887542  22222  12112112 2 21 112222 223


Q ss_pred             CcEEEEE-------------------------------cCCCc---ee--eeeCCCCCEEEEEEeCC--EEEEEcCCCeE
Q 021744          210 NFVKAWN-------------------------------TQTNT---DL--SLSGPVGQVYAMAVGND--LLFAGTQDGAI  251 (308)
Q Consensus       210 ~~i~~wd-------------------------------~~~~~---~~--~~~~~~~~v~~~~~~~~--~l~~g~~dg~i  251 (308)
                      +.+..++                               ++..-   ++  .......+|.+++|+++  .+++-..||.|
T Consensus       371 g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l  450 (928)
T PF04762_consen  371 GQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSL  450 (928)
T ss_pred             CcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCE
Confidence            4333222                               11110   01  11123568999999988  68999999999


Q ss_pred             EEEEcCCC
Q 021744          252 LAWKFNVT  259 (308)
Q Consensus       252 ~iwd~~~~  259 (308)
                      .+|.....
T Consensus       451 ~~~~~~~~  458 (928)
T PF04762_consen  451 SIYEWDLK  458 (928)
T ss_pred             EEEEecCC
Confidence            99986543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.70  E-value=0.0052  Score=56.73  Aligned_cols=105  Identities=9%  Similarity=0.017  Sum_probs=75.9

Q ss_pred             eEEecCCCe-eecc----CCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeE
Q 021744           72 KRFANNTWG-RNNN----FNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQ  145 (308)
Q Consensus        72 i~~s~~g~~-~s~~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~  145 (308)
                      ..|+|.... |.++    ..|+|-||- ++|++-.....+.  .+.+++|.|.... +.|=.-|.+.+|...+. +.-..
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~--hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~-e~htv   96 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV--HATSLCWHPEEFVLAQGWEMGVSDVQKTNTT-ETHTV   96 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce--ehhhhccChHHHHHhhccccceeEEEecCCc-eeeee
Confidence            567777776 4444    457888883 5565432222221  1445778887655 66777899999998877 44444


Q ss_pred             eeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744          146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA  180 (308)
Q Consensus       146 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~  180 (308)
                      ...|+.+|..+.|+++|..++++..-|.|.+|...
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            45699999999999999999999999999999765

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.69  E-value=0.017  Score=46.11  Aligned_cols=145  Identities=13%  Similarity=-0.023  Sum_probs=94.4

Q ss_pred             eEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCc
Q 021744           72 KRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGH  149 (308)
Q Consensus        72 i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h  149 (308)
                      +.+-++.+.  +.|+..+.+.--|..+++..-+...+.  .+.+-+.-..+..+.|+..|.+++.+.+++ .+...+..-
T Consensus        16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~--RiE~sa~vvgdfVV~GCy~g~lYfl~~~tG-s~~w~f~~~   92 (354)
T KOG4649|consen   16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGV--RIECSAIVVGDFVVLGCYSGGLYFLCVKTG-SQIWNFVIL   92 (354)
T ss_pred             EEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCc--eeeeeeEEECCEEEEEEccCcEEEEEecch-hheeeeeeh
Confidence            455566555  888888988888888876553332222  121111222233588999999999999999 556655532


Q ss_pred             ccceE-EEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeE---EEEc-CCCEEEEEcCCcEEEEEcCCC
Q 021744          150 QKVVS-GITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG---CMIS-EGPWIFIGVTNFVKAWNTQTN  220 (308)
Q Consensus       150 ~~~v~-~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~---~~~~-~~~~l~~~~d~~i~~wd~~~~  220 (308)
                       +.|. .....+++..+..++.|++.+.-|.++..++.+.+.++.+.   ++.+ ++.+.++...|.+.--..++.
T Consensus        93 -~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen   93 -ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             -hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence             2332 23456789999999999999999999999999988555443   2333 455555555665544444443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.65  E-value=0.032  Score=48.20  Aligned_cols=207  Identities=12%  Similarity=0.133  Sum_probs=106.9

Q ss_pred             eeEEecCCCe-eeccCC-CcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCC--eEEEEEcCCCceeeeEe
Q 021744           71 AKRFANNTWG-RNNNFN-NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCK--FLHSWTVGDGFKLLTQL  146 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~iwd~~~~~~~~~~~  146 (308)
                      .++||||+++ |....| ..|+.+.+........ ..   -.+....+-..|     ..+.  .+.++|+.+++......
T Consensus       105 ~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-~y---p~~~~~~YPk~G-----~~np~v~l~v~~~~~~~~~~~~~  175 (353)
T PF00930_consen  105 AVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-QY---PEVESIRYPKAG-----DPNPRVSLFVVDLASGKTTELDP  175 (353)
T ss_dssp             SEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-SS----EEEEEE--BTT-----S---EEEEEEEESSSTCCCEE--
T ss_pred             ceEECCCCCEEEEEEECCcCCceEEeeccCCccc-cC---CcccccccCCCC-----CcCCceEEEEEECCCCcEEEeee
Confidence            6999999999 655544 5566665521100000 00   012223332222     2222  35678888773211111


Q ss_pred             ----eCcccceEEEEEeCCCCEEEE--eeCCC---cEEEEeCCCCeEEEEEe--CCCe-----eEEEE-cCCCEEE-EEc
Q 021744          147 ----EGHQKVVSGITLPSGSDKLYS--GSKDE---TVRVWDCASGQCAGVIN--LGGE-----VGCMI-SEGPWIF-IGV  208 (308)
Q Consensus       147 ----~~h~~~v~~~~~~~~~~~l~s--~s~dg---~v~~wd~~~~~~~~~~~--~~~~-----v~~~~-~~~~~l~-~~~  208 (308)
                          .....-+..+.|.+++..|+.  ...+.   .+.+.|..+++....+.  .+..     ...+. +++..++ ...
T Consensus       176 ~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~  255 (353)
T PF00930_consen  176 PNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE  255 (353)
T ss_dssp             -HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE
T ss_pred             ccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE
Confidence                233556889999999884433  33333   46677887765544433  2221     22334 4555444 444


Q ss_pred             -CC--cEEEEEcCCCceeeeeCCCCCEEE-EEEeCC---EEEEEcCC----CeEEEEEcC-CCCcccccceeccccCCCe
Q 021744          209 -TN--FVKAWNTQTNTDLSLSGPVGQVYA-MAVGND---LLFAGTQD----GAILAWKFN-VTTNCFEPAASLKVHTDSN  276 (308)
Q Consensus       209 -d~--~i~~wd~~~~~~~~~~~~~~~v~~-~~~~~~---~l~~g~~d----g~i~iwd~~-~~~~~~~~~~~~~~~~~~v  276 (308)
                       +|  .|.+++..++....+....-.|.. +.++++   +++++..+    ..|+..++. .     ..+..+......-
T Consensus       256 ~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~-----~~~~~LT~~~~~~  330 (353)
T PF00930_consen  256 RDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG-----GEPKCLTCEDGDH  330 (353)
T ss_dssp             TTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET-----TEEEESSTTSSTT
T ss_pred             cCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC-----CCeEeccCCCCCc
Confidence             66  778888888877766666667755 556666   45555553    245555556 3     2334444333333


Q ss_pred             EE-EEecCCCeEEEee
Q 021744          277 RA-HFSRDVTSLLGSV  291 (308)
Q Consensus       277 ~~-~~s~d~~~l~~s~  291 (308)
                      .. .|||++++++..+
T Consensus       331 ~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  331 YSASFSPDGKYYVDTY  346 (353)
T ss_dssp             EEEEE-TTSSEEEEEE
T ss_pred             eEEEECCCCCEEEEEE
Confidence            44 9999999998554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.65  E-value=0.026  Score=46.86  Aligned_cols=175  Identities=13%  Similarity=0.079  Sum_probs=103.4

Q ss_pred             ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEE--------------
Q 021744          121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG--------------  186 (308)
Q Consensus       121 ~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~--------------  186 (308)
                      ..+.|.++| +++++........+..  +...|..+...++-+.++.-+ |+.+.++++..-....              
T Consensus         9 ~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~   84 (275)
T PF00780_consen    9 RLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLP   84 (275)
T ss_pred             EEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccccc
Confidence            457788888 8999984332233322  334499999998877766654 4999999988654433              


Q ss_pred             -EEeCCCeeEEEE-----cCCCEEEEEcCCcEEEEEcCCC-----ceeeeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEE
Q 021744          187 -VINLGGEVGCMI-----SEGPWIFIGVTNFVKAWNTQTN-----TDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWK  255 (308)
Q Consensus       187 -~~~~~~~v~~~~-----~~~~~l~~~~d~~i~~wd~~~~-----~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd  255 (308)
                       .+.....+..+.     .....|+++...+|.+|.....     ....-..-...+.+++|.++.++.|..+ ...+.|
T Consensus        85 ~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~-~f~~id  163 (275)
T PF00780_consen   85 TKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSK-GFYLID  163 (275)
T ss_pred             ccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCC-ceEEEe
Confidence             111122222232     2344666777778888876542     2222223457889999998877777644 588889


Q ss_pred             cCCCCcccccceeccc----------cCCCeEEEEecCCCeEEEeeceEEEEeecCc
Q 021744          256 FNVTTNCFEPAASLKV----------HTDSNRAHFSRDVTSLLGSVSFIMFIGQNNK  302 (308)
Q Consensus       256 ~~~~~~~~~~~~~~~~----------~~~~v~~~~s~d~~~l~~s~s~~i~~~~~~~  302 (308)
                      +.++..  +.+.....          ...++...--+++.+|++.....+|+-.+.+
T Consensus       164 l~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~~~G~  218 (275)
T PF00780_consen  164 LNTGSP--SELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVFVNKNGE  218 (275)
T ss_pred             cCCCCc--eEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEEEEcCCCC
Confidence            986532  22222111          1223444222345777766666676655443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.63  E-value=2e-05  Score=69.57  Aligned_cols=184  Identities=15%  Similarity=0.250  Sum_probs=110.8

Q ss_pred             eeeeeeecCC-ce--EEeeCCCeEEEEEcCCCcee-eeEeeCcccceEEEEEeC-CCCEEEEee----CCCcEEEEeCCC
Q 021744          111 DILCRNWVQG-NC--MYGEKCKFLHSWTVGDGFKL-LTQLEGHQKVVSGITLPS-GSDKLYSGS----KDETVRVWDCAS  181 (308)
Q Consensus       111 ~~~~~~~~~~-~~--~~g~~d~~i~iwd~~~~~~~-~~~~~~h~~~v~~~~~~~-~~~~l~s~s----~dg~v~~wd~~~  181 (308)
                      +.+++.+.+. .+  +.|..+|.|-+-..+..... .....+|....++++|++ |.+.||.|-    .|..+.|||+.+
T Consensus        59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s  138 (783)
T KOG1008|consen   59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS  138 (783)
T ss_pred             ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence            4444444333 34  67888999999888755322 344567889999999998 445666663    356899999998


Q ss_pred             C--eEEEEEeC------CCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeC---CEEEEEcCCC
Q 021744          182 G--QCAGVINL------GGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN---DLLFAGTQDG  249 (308)
Q Consensus       182 ~--~~~~~~~~------~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~---~~l~~g~~dg  249 (308)
                      +  .+......      .....|...+.+++.+|. ...++++|++........-.+..+..+.+.|   +++++-. ||
T Consensus       139 ~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg  217 (783)
T KOG1008|consen  139 LLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DG  217 (783)
T ss_pred             ccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cC
Confidence            6  33332221      111222235677777887 6799999998543321111223445555655   4777655 99


Q ss_pred             eEEEEE-cCCCCcccccceeccccCC----CeEE-EEecCCCeEEEee---ceEEEEe
Q 021744          250 AILAWK-FNVTTNCFEPAASLKVHTD----SNRA-HFSRDVTSLLGSV---SFIMFIG  298 (308)
Q Consensus       250 ~i~iwd-~~~~~~~~~~~~~~~~~~~----~v~~-~~s~d~~~l~~s~---s~~i~~~  298 (308)
                      .|.+|| .++-+   .++..+.....    .+.. +|+|...-+++..   +..|+..
T Consensus       218 ~iAiwD~~rnie---npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrly  272 (783)
T KOG1008|consen  218 DIAIWDTYRNIE---NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLY  272 (783)
T ss_pred             ceeeccchhhhc---cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEe
Confidence            999999 43322   44444433333    3666 9998765555443   5555443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.63  E-value=0.0059  Score=53.73  Aligned_cols=165  Identities=7%  Similarity=0.005  Sum_probs=92.9

Q ss_pred             eEEecCCCe---eeccCC--CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCe--EEEEEcCCCcee
Q 021744           72 KRFANNTWG---RNNNFN--NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKF--LHSWTVGDGFKL  142 (308)
Q Consensus        72 i~~s~~g~~---~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~--i~iwd~~~~~~~  142 (308)
                      -+|+|++..   ++-...  ..+.++++++++.....  ........-.|+|+|..  ++...|+.  |++.|+..+ + 
T Consensus       198 p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~--~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~-~-  273 (425)
T COG0823         198 PAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL--NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK-N-  273 (425)
T ss_pred             cccCcCCCceEEEEEecCCCceEEEEeccCCccceee--ccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC-c-
Confidence            477888776   222222  35889999887654222  23333555689999966  44556665  555666665 3 


Q ss_pred             eeEeeCcccceEEEEEeCCCCEEEEe-eCCCc--EEEEeCCCCeEEEEEe-CCCe-eEEEEcCCCEEEEEc--CCc--EE
Q 021744          143 LTQLEGHQKVVSGITLPSGSDKLYSG-SKDET--VRVWDCASGQCAGVIN-LGGE-VGCMISEGPWIFIGV--TNF--VK  213 (308)
Q Consensus       143 ~~~~~~h~~~v~~~~~~~~~~~l~s~-s~dg~--v~~wd~~~~~~~~~~~-~~~~-v~~~~~~~~~l~~~~--d~~--i~  213 (308)
                      +..+..-.+.-..-.|+|||++++-. +..|.  |.+++.+.++..+... .... ...++++|++++...  +|.  |.
T Consensus       274 ~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~  353 (425)
T COG0823         274 LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDID  353 (425)
T ss_pred             ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeE
Confidence            33355444444467899999987654 44554  5566666555422222 2222 334578999888543  454  66


Q ss_pred             EEEcCCCceeeeeCCCCCEEEEEEeCC
Q 021744          214 AWNTQTNTDLSLSGPVGQVYAMAVGND  240 (308)
Q Consensus       214 ~wd~~~~~~~~~~~~~~~v~~~~~~~~  240 (308)
                      +.|+.++..............-.+.++
T Consensus       354 ~~~~~~~~~~~~lt~~~~~e~ps~~~n  380 (425)
T COG0823         354 KNDLASGGKIRILTSTYLNESPSWAPN  380 (425)
T ss_pred             EeccCCCCcEEEccccccCCCCCcCCC
Confidence            777766653322222222333444454

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.63  E-value=0.0016  Score=57.19  Aligned_cols=142  Identities=12%  Similarity=0.121  Sum_probs=91.7

Q ss_pred             eeEeeCcccceEEEEEeCCCCEEEEee---CC-CcEEEEeCCCCeEEEEEe--CCCeeEEEEcCCCEEEEEc--CC--cE
Q 021744          143 LTQLEGHQKVVSGITLPSGSDKLYSGS---KD-ETVRVWDCASGQCAGVIN--LGGEVGCMISEGPWIFIGV--TN--FV  212 (308)
Q Consensus       143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s---~d-g~v~~wd~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~--d~--~i  212 (308)
                      ...+..-...+..-+|+|++..++-.+   .. ..+.++|+++++......  .......++|+|+.|+.+.  |+  .|
T Consensus       185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~i  264 (425)
T COG0823         185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDI  264 (425)
T ss_pred             eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccE
Confidence            334444456677788999987754332   22 358999999987766665  3334456789999888543  55  68


Q ss_pred             EEEEcCCCceeeeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEE--EcCCCCcccccceeccccCCCeEE-EEecCCCe
Q 021744          213 KAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAW--KFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTS  286 (308)
Q Consensus       213 ~~wd~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~  286 (308)
                      .++|+.+++...+....+.-..=.|+||   ++++.+..|.-.||  +.+..     ....+......-.. .++|||++
T Consensus       265 y~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~-----~~~riT~~~~~~~~p~~SpdG~~  339 (425)
T COG0823         265 YLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS-----QVTRLTFSGGGNSNPVWSPDGDK  339 (425)
T ss_pred             EEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC-----ceeEeeccCCCCcCccCCCCCCE
Confidence            8889998886665554444456778898   55566667765554  55543     22333333333336 99999999


Q ss_pred             EEE
Q 021744          287 LLG  289 (308)
Q Consensus       287 l~~  289 (308)
                      ++.
T Consensus       340 i~~  342 (425)
T COG0823         340 IVF  342 (425)
T ss_pred             EEE
Confidence            983

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.60  E-value=0.0087  Score=54.25  Aligned_cols=210  Identities=10%  Similarity=-0.008  Sum_probs=113.9

Q ss_pred             eEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEE-ee---C-CCeEEEEEcCCCceeee
Q 021744           72 KRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMY-GE---K-CKFLHSWTVGDGFKLLT  144 (308)
Q Consensus        72 i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~---~-d~~i~iwd~~~~~~~~~  144 (308)
                      +=++|||..  .+.-+.+.+.+.|.++.+...  +.........+.+.+++..+. .+   + ...+..-+..+. ..+.
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~--qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~-d~~v  274 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAW--QVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER-DWVV  274 (635)
T ss_pred             cccCCCCCEeecccceeEEEEEEECccceEEE--EEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccC-ceEE
Confidence            334567765  455566777778876543321  111122345566777775522 21   1 112222222111 1111


Q ss_pred             EeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC-----CeEEEEEeCCCee--EEEEcCCCEEEEEc--CCcEEEE
Q 021744          145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-----GQCAGVINLGGEV--GCMISEGPWIFIGV--TNFVKAW  215 (308)
Q Consensus       145 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~-----~~~~~~~~~~~~v--~~~~~~~~~l~~~~--d~~i~~w  215 (308)
                      .+.  ...+  -++.++|++...  .++.|.+.|.++     .+.+..+..+...  ..++|||++++++.  +.++.++
T Consensus       275 vfn--i~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVI  348 (635)
T PRK02888        275 VFN--IARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVI  348 (635)
T ss_pred             EEc--hHHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEE
Confidence            110  0000  023446766554  367899999998     4566666643333  34579999998765  8899999


Q ss_pred             EcCCCce------------e-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCC------CCcccccceeccc---
Q 021744          216 NTQTNTD------------L-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV------TTNCFEPAASLKV---  271 (308)
Q Consensus       216 d~~~~~~------------~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~------~~~~~~~~~~~~~---  271 (308)
                      |+.+.+.            . ...- .......+|.++  .+.+--.|..|..|++..      +......+..+.-   
T Consensus       349 Dv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~  427 (635)
T PRK02888        349 DVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQ  427 (635)
T ss_pred             EChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCc
Confidence            9988653            1 1111 223345678877  556666788999999875      1111133333443   


Q ss_pred             --cCCCeEE-EEecCCCeEEEee
Q 021744          272 --HTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       272 --~~~~v~~-~~s~d~~~l~~s~  291 (308)
                        |...... .-.|||+||++-.
T Consensus       428 pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        428 PGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             cceeeecCCCcCCCCCCEEEEcc
Confidence              3333333 5578999998765

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.58  E-value=0.028  Score=45.55  Aligned_cols=173  Identities=10%  Similarity=-0.029  Sum_probs=100.9

Q ss_pred             eeEEecCCCe-e-eccCCC-cEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEee
Q 021744           71 AKRFANNTWG-R-NNNFNN-HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLE  147 (308)
Q Consensus        71 ~i~~s~~g~~-~-s~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~  147 (308)
                      .+.|..+|.. - ||-+.. .|+.+|+++++..........-.-.-+....+....-.=.++...+||..+- +.+.++.
T Consensus        49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl-~~~~~~~  127 (264)
T PF05096_consen   49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTL-KKIGTFP  127 (264)
T ss_dssp             EEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTT-EEEEEEE
T ss_pred             cEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccc-eEEEEEe
Confidence            5788777777 4 444443 5899999988654221111111111222233322233446789999999988 7777775


Q ss_pred             CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe---CCCeeEEE----EcCCCEEE-EEcCCcEEEEEcCC
Q 021744          148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN---LGGEVGCM----ISEGPWIF-IGVTNFVKAWNTQT  219 (308)
Q Consensus       148 ~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~---~~~~v~~~----~~~~~~l~-~~~d~~i~~wd~~~  219 (308)
                       ..+.=+.++  .+++.|+.......+.++|.++.+....+.   ...++..+    +.+|.+.| +-....|...|..+
T Consensus       128 -y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~t  204 (264)
T PF05096_consen  128 -YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPET  204 (264)
T ss_dssp             --SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT
T ss_pred             -cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCC
Confidence             344556776  456677776667889999999988877776   33444332    45666555 23377888888888


Q ss_pred             Ccee-eee---------------CCCCCEEEEEEeCC---EEEEEcC
Q 021744          220 NTDL-SLS---------------GPVGQVYAMAVGND---LLFAGTQ  247 (308)
Q Consensus       220 ~~~~-~~~---------------~~~~~v~~~~~~~~---~l~~g~~  247 (308)
                      |+.. .+.               ...+-.+.|++.|+   +++||=.
T Consensus       205 G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  205 GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             -BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence            8765 211               01346899999887   6777643

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.57  E-value=0.018  Score=50.20  Aligned_cols=216  Identities=13%  Similarity=0.087  Sum_probs=117.5

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcc--------------------------c------c----------ccee
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN--------------------------I------N----------NRAV  107 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~--------------------------~------~----------~~~~  107 (308)
                      .+.|+++..- +.|...|.|-||.....+...                          .      .          ....
T Consensus         6 ~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~   85 (395)
T PF08596_consen    6 HVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAK   85 (395)
T ss_dssp             EEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---
T ss_pred             EEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheecc
Confidence            4778888666 888888998888763221110                          0      0          0111


Q ss_pred             eeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEe--eC------cccceEEEEEeC-----CC---CEEEEeeCC
Q 021744          108 IKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQL--EG------HQKVVSGITLPS-----GS---DKLYSGSKD  171 (308)
Q Consensus       108 ~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~--~~------h~~~v~~~~~~~-----~~---~~l~s~s~d  171 (308)
                      ...+.+++.+.-|-.+.|.++|.+.|.|++.. ..+..-  ..      ....|+++.|..     |+   -.++.|...
T Consensus        86 ~g~vtal~~S~iGFvaigy~~G~l~viD~RGP-avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~  164 (395)
T PF08596_consen   86 QGPVTALKNSDIGFVAIGYESGSLVVIDLRGP-AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS  164 (395)
T ss_dssp             S-SEEEEEE-BTSEEEEEETTSEEEEEETTTT-EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred             CCcEeEEecCCCcEEEEEecCCcEEEEECCCC-eEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence            23366777777777788999999999999877 454431  11      234577777741     22   357899999


Q ss_pred             CcEEEEeCC--C-CeEE----EEE-eCCCeeEEEE---c---------------------CCCEEEEEcCCcEEEEEcCC
Q 021744          172 ETVRVWDCA--S-GQCA----GVI-NLGGEVGCMI---S---------------------EGPWIFIGVTNFVKAWNTQT  219 (308)
Q Consensus       172 g~v~~wd~~--~-~~~~----~~~-~~~~~v~~~~---~---------------------~~~~l~~~~d~~i~~wd~~~  219 (308)
                      |.+.+|.+.  . +...    ... .+.+++..+.   .                     -..++++.++..++++...+
T Consensus       165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~  244 (395)
T PF08596_consen  165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK  244 (395)
T ss_dssp             SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred             CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence            999999765  1 2111    111 1333333221   1                     12366778899999999988


Q ss_pred             Ccee-eeeCCCCCEEEEEEe------CC-EEEEEcCCCeEEEEEcCCCCcccccceeccccC----CCeEE-EEecCCCe
Q 021744          220 NTDL-SLSGPVGQVYAMAVG------ND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT----DSNRA-HFSRDVTS  286 (308)
Q Consensus       220 ~~~~-~~~~~~~~v~~~~~~------~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~v~~-~~s~d~~~  286 (308)
                      .+.. ...........+.+-      .. .|++-..+|.|++|.+..-    +.+..+.-..    ..+.. .++++|+.
T Consensus       245 ~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L----kei~~~~l~~~~d~~~~~~ssis~~Gdi  320 (395)
T PF08596_consen  245 SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL----KEIKSVSLPPPLDSRRLSSSSISRNGDI  320 (395)
T ss_dssp             --EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT------EEEEEE-SS---HHHHTT-EE-TTS-E
T ss_pred             CcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc----hHhhcccCCCccccccccccEECCCCCE
Confidence            7665 222221223334442      12 7788889999999999985    5555544321    22333 88999998


Q ss_pred             EEEee
Q 021744          287 LLGSV  291 (308)
Q Consensus       287 l~~s~  291 (308)
                      ++-.+
T Consensus       321 ~~~~g  325 (395)
T PF08596_consen  321 FYWTG  325 (395)
T ss_dssp             EEE-S
T ss_pred             EEEeC
Confidence            87544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.57  E-value=0.0096  Score=47.52  Aligned_cols=125  Identities=18%  Similarity=0.178  Sum_probs=86.0

Q ss_pred             CCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE-EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEE-EEEE
Q 021744          162 SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM-ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVY-AMAV  237 (308)
Q Consensus       162 ~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~-~~~~  237 (308)
                      ..+++.|+..+.+.--|..+|..+.+-..+.++.+- .--|.+++.|. .+.+++.+.++++.. .+.. .+.|. ....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~-~~~vk~~a~~  101 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVI-LETVKVRAQC  101 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeee-hhhhccceEE
Confidence            467889999999999999999988877766665543 23466677766 999999999999665 3332 22222 1223


Q ss_pred             eCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEec-CCCeEEEee
Q 021744          238 GND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR-DVTSLLGSV  291 (308)
Q Consensus       238 ~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~-d~~~l~~s~  291 (308)
                      .++  .+..|+.|+..+..|.++.    ..+...+-....-.+ +..| ++.+.+++.
T Consensus       102 d~~~glIycgshd~~~yalD~~~~----~cVykskcgG~~f~sP~i~~g~~sly~a~t  155 (354)
T KOG4649|consen  102 DFDGGLIYCGSHDGNFYALDPKTY----GCVYKSKCGGGTFVSPVIAPGDGSLYAAIT  155 (354)
T ss_pred             cCCCceEEEecCCCcEEEeccccc----ceEEecccCCceeccceecCCCceEEEEec
Confidence            344  8999999999999999986    666665543333334 6676 555555444

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.49  E-value=0.0033  Score=54.89  Aligned_cols=131  Identities=12%  Similarity=0.134  Sum_probs=92.1

Q ss_pred             CCCE-EEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--EcCC--------CEEEEEcCCcEEEEEcCCCce--e-eee
Q 021744          161 GSDK-LYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEG--------PWIFIGVTNFVKAWNTQTNTD--L-SLS  226 (308)
Q Consensus       161 ~~~~-l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~--------~~l~~~~d~~i~~wd~~~~~~--~-~~~  226 (308)
                      +.++ +.++.....++-.|++.|+.+.+++.+..+..+  .++.        +.|+.-+++.|.-||.+-...  + ...
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q  423 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ  423 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence            3344 456667778999999999999999965554433  3332        233333488999999984432  1 222


Q ss_pred             CC----CCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEE
Q 021744          227 GP----VGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIM  295 (308)
Q Consensus       227 ~~----~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i  295 (308)
                      .|    .....|++-..+ ++++|+.+|.|++||--..    +.-..+.+-..+|.. ..+.||+++++.|...|
T Consensus       424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~----~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyL  494 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGR----RAKTALPGLGDAIKHVDVTADGKWILATCKTYL  494 (644)
T ss_pred             ccccccccccceeeecCCceEEEeecCCcEEeehhhhh----hhhhcccccCCceeeEEeeccCcEEEEecccEE
Confidence            22    235677777777 9999999999999997332    444567788889999 99999999999884333

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.27  E-value=0.09  Score=44.28  Aligned_cols=171  Identities=13%  Similarity=0.146  Sum_probs=106.0

Q ss_pred             CcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEE-----------eeCCCeEEEEEcCCCceeeeEeeCc---cc-
Q 021744           87 NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMY-----------GEKCKFLHSWTVGDGFKLLTQLEGH---QK-  151 (308)
Q Consensus        87 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~~d~~i~iwd~~~~~~~~~~~~~h---~~-  151 (308)
                      +.+.|.|.++++.++....+....   +..+|++..+.           |-..-.|.+||..+. ++..++.--   .. 
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~~~---~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL-~~~~EI~iP~k~R~~   92 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFLGN---VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTL-SPTGEIEIPPKPRAQ   92 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESSEE---EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTT-EEEEEEEETTS-B--
T ss_pred             ceEEEEECCCCcEEEEeecccCCc---eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcC-cccceEecCCcchhe
Confidence            379999988887654443333322   44577775421           555778999999988 565544311   11 


Q ss_pred             ---ceEEEEEeCCCCEEEEe--eCCCcEEEEeCCCCeEEEEEeCCCeeEEE-EcCCCEEEEEcCCcEEEEEcC-CCcee-
Q 021744          152 ---VVSGITLPSGSDKLYSG--SKDETVRVWDCASGQCAGVINLGGEVGCM-ISEGPWIFIGVTNFVKAWNTQ-TNTDL-  223 (308)
Q Consensus       152 ---~v~~~~~~~~~~~l~s~--s~dg~v~~wd~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~d~~i~~wd~~-~~~~~-  223 (308)
                         ....++++.|+++++..  +---+|.+-|+..++.+.++..++..... +.+..+...|.||.+.-..+. .++.. 
T Consensus        93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~  172 (342)
T PF06433_consen   93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQ  172 (342)
T ss_dssp             BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred             ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeE
Confidence               12345678888877654  34567899999999999988877765554 445556667889988888877 34433 


Q ss_pred             e----eeCCCCCEE-EEEEeCC--EEEEEcCCCeEEEEEcCCCCc
Q 021744          224 S----LSGPVGQVY-AMAVGND--LLFAGTQDGAILAWKFNVTTN  261 (308)
Q Consensus       224 ~----~~~~~~~v~-~~~~~~~--~l~~g~~dg~i~iwd~~~~~~  261 (308)
                      +    +....+++. .-++...  .++.-+.+|.|+-.|+.....
T Consensus       173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~  217 (342)
T PF06433_consen  173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA  217 (342)
T ss_dssp             EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE
T ss_pred             eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc
Confidence            1    111222222 3334433  566678899999999987643

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.26  E-value=0.026  Score=39.13  Aligned_cols=97  Identities=21%  Similarity=0.266  Sum_probs=64.2

Q ss_pred             eEEEEEe---CCC-CEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEE-cCCCEEEEE-cCCcEEEEEcCCCceeeee
Q 021744          153 VSGITLP---SGS-DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI-SEGPWIFIG-VTNFVKAWNTQTNTDLSLS  226 (308)
Q Consensus       153 v~~~~~~---~~~-~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~-~d~~i~~wd~~~~~~~~~~  226 (308)
                      |++|++.   .++ +.|+.|+.|..|++|+-.  +.+.++.....+.++. ..+..++.+ .+|+|-+|+-... .-..+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R-lWRiK   78 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR-LWRIK   78 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcce-eeeec
Confidence            5566654   333 579999999999999744  7788888777777774 333445544 4999999975322 11333


Q ss_pred             CCCCCEEEEEEeC---C---EEEEEcCCCeEEE
Q 021744          227 GPVGQVYAMAVGN---D---LLFAGTQDGAILA  253 (308)
Q Consensus       227 ~~~~~v~~~~~~~---~---~l~~g~~dg~i~i  253 (308)
                      . ...+.++++..   +   -|++|-.+|.|-+
T Consensus        79 S-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   79 S-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             c-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            2 33466666543   2   6889988888753

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.26  E-value=0.084  Score=43.76  Aligned_cols=223  Identities=13%  Similarity=0.082  Sum_probs=121.6

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCeeeccCCCcEEEEECCCCCCcccc--
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNIN--  103 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~--  103 (308)
                      +..++.|+.+| +.+++.... ..+....    . ..     .-..+.+.|+-+.+..-.|+.+.++++..-......  
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~-~~~~~i~----~-~~-----~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~   74 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDP-SKPTRIL----K-LS-----SITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAP   74 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCC-ccceeEe----e-cc-----eEEEEEEecccCEEEEEcCCccEEEEchhhcccccccc
Confidence            56678888888 888887222 0000000    0 00     011467777766633334699999999654433211  


Q ss_pred             -----------cceeeeeeeeee--eecCC-ceEEeeCCCeEEEEEcCCC---c-eeeeEeeCcccceEEEEEeCCCCEE
Q 021744          104 -----------NRAVIKTDILCR--NWVQG-NCMYGEKCKFLHSWTVGDG---F-KLLTQLEGHQKVVSGITLPSGSDKL  165 (308)
Q Consensus       104 -----------~~~~~~~~~~~~--~~~~~-~~~~g~~d~~i~iwd~~~~---~-~~~~~~~~h~~~v~~~~~~~~~~~l  165 (308)
                                 .....+.+...+  -...+ ..+.......|.+|.....   . +..+++. -.+.+.+++|.  ++.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i  151 (275)
T PF00780_consen   75 LAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKI  151 (275)
T ss_pred             ccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEE
Confidence                       011111122222  11222 3344555568888887653   1 2445554 35788999998  4567


Q ss_pred             EEeeCCCcEEEEeCCCCeEEEEEeCC-------------CeeEEEE-cCCCEEEEEcCCcEEEEEcCCCcee--eeeCCC
Q 021744          166 YSGSKDETVRVWDCASGQCAGVINLG-------------GEVGCMI-SEGPWIFIGVTNFVKAWNTQTNTDL--SLSGPV  229 (308)
Q Consensus       166 ~s~s~dg~v~~wd~~~~~~~~~~~~~-------------~~v~~~~-~~~~~l~~~~d~~i~~wd~~~~~~~--~~~~~~  229 (308)
                      +.|..+ ...+.|+.++.....+...             .++..+. +++++|+ +.+..-.+.|.......  .+. -.
T Consensus       152 ~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll-~~~~~g~fv~~~G~~~r~~~i~-W~  228 (275)
T PF00780_consen  152 CVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLL-CYDNIGVFVNKNGEPSRKSTIQ-WS  228 (275)
T ss_pred             EEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEE-EecceEEEEcCCCCcCcccEEE-cC
Confidence            766654 4888899977665544311             1233332 4455554 44444444454332222  222 23


Q ss_pred             CCEEEEEEeCCEEEEEcCCCeEEEEEcCCCCcccccceeccc
Q 021744          230 GQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKV  271 (308)
Q Consensus       230 ~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  271 (308)
                      ..+.++++...+++.-+. +.|.||++.++    ++++++..
T Consensus       229 ~~p~~~~~~~pyli~~~~-~~iEV~~~~~~----~lvQ~i~~  265 (275)
T PF00780_consen  229 SAPQSVAYSSPYLIAFSS-NSIEVRSLETG----ELVQTIPL  265 (275)
T ss_pred             CchhEEEEECCEEEEECC-CEEEEEECcCC----cEEEEEEC
Confidence            366778887676666555 45999999998    67777664

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.16  E-value=0.024  Score=51.57  Aligned_cols=179  Identities=8%  Similarity=-0.005  Sum_probs=104.3

Q ss_pred             eecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCC----CcEEEEeCCCCeEEEEEe
Q 021744          116 NWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD----ETVRVWDCASGQCAGVIN  189 (308)
Q Consensus       116 ~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d----g~v~~wd~~~~~~~~~~~  189 (308)
                      +.++|..  .+.-..+.+.+.|..+. +...++.- .+....+++++++.++++.+.+    .++..-+......+..+.
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etm-eV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn  277 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETM-EVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN  277 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccc-eEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence            3445533  23334577778888876 55555442 2244677889999998777632    233333333222222222


Q ss_pred             CCCeeEEEEcCCCEEEEEcCCcEEEEEcCC-----CceeeeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCc
Q 021744          190 LGGEVGCMISEGPWIFIGVTNFVKAWNTQT-----NTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTN  261 (308)
Q Consensus       190 ~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~-----~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~  261 (308)
                      .. .+..+.++|++... .++.|.+.|.++     .+......-......+.++||   .++++..+.+|.+.|+.+.+.
T Consensus       278 i~-~iea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~  355 (635)
T PRK02888        278 IA-RIEEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD  355 (635)
T ss_pred             hH-HHHHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence            11 11123457777666 367899999998     344443344567789999999   566677799999999987531


Q ss_pred             cc--------ccceeccccCCCeEEEEecCCCeEEEee--ceEEEEee
Q 021744          262 CF--------EPAASLKVHTDSNRAHFSRDVTSLLGSV--SFIMFIGQ  299 (308)
Q Consensus       262 ~~--------~~~~~~~~~~~~v~~~~s~d~~~l~~s~--s~~i~~~~  299 (308)
                      .+        ..+.+.+--..++..+|.++|. ..++.  +..+-.|.
T Consensus       356 ~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~-aytslf~dsqv~kwn  402 (635)
T PRK02888        356 LFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWN  402 (635)
T ss_pred             hhhccCCccceEEEeeccCCCcceEEECCCCC-EEEeEeecceeEEEe
Confidence            00        1233444445566669988885 44443  44444433

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.14  E-value=0.2  Score=45.74  Aligned_cols=104  Identities=2%  Similarity=-0.076  Sum_probs=74.6

Q ss_pred             CCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCc
Q 021744           24 GGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        24 ~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~  100 (308)
                      ....+++-|++-|.+++++-..+           +....+..+-.+.  .+.++++..+ |.|+..+.|.++.++..++.
T Consensus        43 st~~~l~~GsS~G~lyl~~R~~~-----------~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   43 ATEEYLAMGSSAGSVYLYNRHTG-----------EMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             cCCceEEEecccceEEEEecCch-----------hhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            34568999999999999998776           2223333332233  6778888888 88999999999988765433


Q ss_pred             ccc-----cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCC
Q 021744          101 NIN-----NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGD  138 (308)
Q Consensus       101 ~~~-----~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~  138 (308)
                      ...     ...|+..|.++.|++++.. .+|...|.|.+-.+..
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            221     2335666999999999966 7788888888776655

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.13  E-value=0.14  Score=43.67  Aligned_cols=126  Identities=15%  Similarity=0.164  Sum_probs=81.2

Q ss_pred             CeEEEEEcCCC----c--eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCe-EEEEEe--CCCeeEEEEc
Q 021744          129 KFLHSWTVGDG----F--KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ-CAGVIN--LGGEVGCMIS  199 (308)
Q Consensus       129 ~~i~iwd~~~~----~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~-~~~~~~--~~~~v~~~~~  199 (308)
                      |.|.++++...    .  +.+... ..+++|++++-- ++. |+.+. .+.|.+|++...+ .+..-.  ....+.++..
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~  137 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV  137 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence            99999999873    1  222222 357889998876 344 44433 4789999998877 444333  4446666766


Q ss_pred             CCCEEEEEc-CCcEEEE--EcCCCcee--eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCC
Q 021744          200 EGPWIFIGV-TNFVKAW--NTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       200 ~~~~l~~~~-d~~i~~w--d~~~~~~~--~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~  258 (308)
                      -+.++++|. ...+.++  +....+..  ........++++.+-++  .++.+..+|.+.++....
T Consensus       138 ~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  138 FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            677888887 5666655  54333333  23334557889988844  899999999999998874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.12  E-value=0.021  Score=39.64  Aligned_cols=93  Identities=8%  Similarity=0.025  Sum_probs=60.5

Q ss_pred             ecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccc
Q 021744           75 ANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV  152 (308)
Q Consensus        75 s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~  152 (308)
                      .-+|..  +.|+.|..||+|+-+.  .+  ........+..+.....+.++++..+|+|-+|+-...   +...+. +..
T Consensus        11 d~dg~~eLlvGs~D~~IRvf~~~e--~~--~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R---lWRiKS-K~~   82 (111)
T PF14783_consen   11 DGDGENELLVGSDDFEIRVFKGDE--IV--AEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR---LWRIKS-KNQ   82 (111)
T ss_pred             CCCCcceEEEecCCcEEEEEeCCc--EE--EEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcce---eeeecc-CCC
Confidence            345545  9999999999998641  11  2223334466666666678899999999999986443   444443 333


Q ss_pred             eEEEEEe-C--CC-CEEEEeeCCCcEE
Q 021744          153 VSGITLP-S--GS-DKLYSGSKDETVR  175 (308)
Q Consensus       153 v~~~~~~-~--~~-~~l~s~s~dg~v~  175 (308)
                      +.++++. .  || ..|++|-.+|.|-
T Consensus        83 ~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   83 VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            5665543 3  33 3588888888764

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.0039  Score=55.50  Aligned_cols=85  Identities=13%  Similarity=-0.016  Sum_probs=67.0

Q ss_pred             eeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceE-EEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEE-
Q 021744          111 DILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVS-GITLPSGSDKLYSGSKDETVRVWDCASGQCAGV-  187 (308)
Q Consensus       111 ~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~-  187 (308)
                      +..+.++|.-.. +.+..+|.|-+.-++ - +.+.++.-|...++ +++|.|||+.++.|-.||+|++.|++++..+.. 
T Consensus        23 i~~~ewnP~~dLiA~~t~~gelli~R~n-~-qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~  100 (665)
T KOG4640|consen   23 IKRIEWNPKMDLIATRTEKGELLIHRLN-W-QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF  100 (665)
T ss_pred             eEEEEEcCccchhheeccCCcEEEEEec-c-ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence            555667777655 778888888888776 3 56777776666666 999999999999999999999999999988877 


Q ss_pred             -EeCCCeeEEE
Q 021744          188 -INLGGEVGCM  197 (308)
Q Consensus       188 -~~~~~~v~~~  197 (308)
                       +.....+.+.
T Consensus       101 ~~s~e~~is~~  111 (665)
T KOG4640|consen  101 LFSVETDISKG  111 (665)
T ss_pred             ccccccchhee
Confidence             3355555555

>PHA02713 hypothetical protein; Provisional

Probab=97.11  E-value=0.076  Score=48.87  Aligned_cols=181  Identities=11%  Similarity=0.091  Sum_probs=91.8

Q ss_pred             cCCCe-eeccCC------CcEEEEECCCCCCcccccceeeeeeeeeeeecCCc-eEEeeCCC-----eEEEEEcCCCc-e
Q 021744           76 NNTWG-RNNNFN------NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGN-CMYGEKCK-----FLHSWTVGDGF-K  141 (308)
Q Consensus        76 ~~g~~-~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~d~-----~i~iwd~~~~~-~  141 (308)
                      -++.. +.|+.+      .++..||..+..............-..+. ..++. ++.|+.++     .+..||+.+.. .
T Consensus       302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            45566 778754      34667787655432111111111111222 23443 37777653     47889988662 1


Q ss_pred             eeeEeeCcccceEEEEEeCCCCEEEEeeCCC-----------------------cEEEEeCCCCeEEEEEeC--C-CeeE
Q 021744          142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDE-----------------------TVRVWDCASGQCAGVINL--G-GEVG  195 (308)
Q Consensus       142 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg-----------------------~v~~wd~~~~~~~~~~~~--~-~~v~  195 (308)
                      .+..+.........+.  -++...+.|+.++                       ++..||.++.+-...-..  . ....
T Consensus       381 ~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~  458 (557)
T PHA02713        381 MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG  458 (557)
T ss_pred             ECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence            1112221111111222  2566666676542                       477788777643222111  1 1112


Q ss_pred             EEEcCCCEEEEEc-C------CcEEEEEcCC-Ccee---eeeCCCCCEEEEEEeCC-EEEEEcCCC--eEEEEEcCCCC
Q 021744          196 CMISEGPWIFIGV-T------NFVKAWNTQT-NTDL---SLSGPVGQVYAMAVGND-LLFAGTQDG--AILAWKFNVTT  260 (308)
Q Consensus       196 ~~~~~~~~l~~~~-d------~~i~~wd~~~-~~~~---~~~~~~~~v~~~~~~~~-~l~~g~~dg--~i~iwd~~~~~  260 (308)
                      ....++++.+.|+ +      ..+..||..+ .+-.   .+....... .++...+ +.++|+.++  .+..||..+.+
T Consensus       459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~-~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL-HTILHDNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc-eeEEECCEEEEEeeecceeehhhcCccccc
Confidence            3345677766664 3      2467899988 5543   233333333 3444445 788888888  67788887764

>smart00320 WD40 WD40 repeats

Probab=97.10  E-value=0.0018  Score=34.72  Aligned_cols=32  Identities=34%  Similarity=0.640  Sum_probs=28.1

Q ss_pred             eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEE
Q 021744          224 SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK  255 (308)
Q Consensus       224 ~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd  255 (308)
                      .+..|...+.++.+.++  .+++++.|+.+++|+
T Consensus         7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            55678889999999987  899999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.08  E-value=0.12  Score=42.14  Aligned_cols=105  Identities=10%  Similarity=0.025  Sum_probs=73.6

Q ss_pred             CCccccccceeEEecCCCe--eeccCCCc-EEEEECCCCCCccccccee-eeeeeeeeeecCCceEEeeC------CCeE
Q 021744           62 PAATANGAAAKRFANNTWG--RNNNFNNH-SNNYRAGNSKNSNINNRAV-IKTDILCRNWVQGNCMYGEK------CKFL  131 (308)
Q Consensus        62 ~~~~gh~~~~i~~s~~g~~--~s~~~d~~-i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~------d~~i  131 (308)
                      .|.++|   .|+++|.-..  +.+-.=|+ ..++|.+..+.+....... ...----.|+++|..+++.+      -|.|
T Consensus        66 lpaR~H---gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGVi  142 (366)
T COG3490          66 LPARGH---GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVI  142 (366)
T ss_pred             cccccC---CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceE
Confidence            345566   4788888777  55556566 4788987776543222111 11122346899998866554      4789


Q ss_pred             EEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEee
Q 021744          132 HSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS  169 (308)
Q Consensus       132 ~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s  169 (308)
                      -|||.+.+.+.+.++..|.-....+.+.+||+.++.+.
T Consensus       143 GvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         143 GVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             EEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            99999988778888988888888999999999887764

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.04  E-value=0.025  Score=53.24  Aligned_cols=130  Identities=15%  Similarity=0.209  Sum_probs=87.5

Q ss_pred             eCCCeEEEEEcCCCceeeeEeeCcccc-eEEEEEeC-----CCCEEEEeeCCCcEEEEeCCCCe--EEE----EEeCCCe
Q 021744          126 EKCKFLHSWTVGDGFKLLTQLEGHQKV-VSGITLPS-----GSDKLYSGSKDETVRVWDCASGQ--CAG----VINLGGE  193 (308)
Q Consensus       126 ~~d~~i~iwd~~~~~~~~~~~~~h~~~-v~~~~~~~-----~~~~l~s~s~dg~v~~wd~~~~~--~~~----~~~~~~~  193 (308)
                      .....|+-.|++.+ +.+..++.|... |..++-..     .....+.|-.+..+..||.+-..  .+.    .+.....
T Consensus       501 ~~~~~ly~mDLe~G-KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~  579 (794)
T PF08553_consen  501 NNPNKLYKMDLERG-KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN  579 (794)
T ss_pred             CCCCceEEEecCCC-cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence            35678899999999 899999887654 55554321     13456777788899999998532  232    1223445


Q ss_pred             eEEEE-cCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEc
Q 021744          194 VGCMI-SEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKF  256 (308)
Q Consensus       194 v~~~~-~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~  256 (308)
                      ..|+. ....+||+|+ +|.|++||--..... .+.+-..+|..|..+.| ..+.++.+..+.+++.
T Consensus       580 Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  580 FSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             ceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence            56664 3445666666 999999995433333 56677889999999999 3333344568888875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.01  E-value=0.22  Score=44.00  Aligned_cols=163  Identities=7%  Similarity=-0.037  Sum_probs=81.7

Q ss_pred             cEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEe-------eCcccceEEEEEeC
Q 021744           88 HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQL-------EGHQKVVSGITLPS  160 (308)
Q Consensus        88 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~-------~~h~~~v~~~~~~~  160 (308)
                      .|+||+.. |+.+....- ....+..+.|..+..++.-..||.+++||+... . ...+       .-....+....+..
T Consensus        62 ~I~iys~s-G~ll~~i~w-~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~-~-~fsl~~~i~~~~v~e~~i~~~~~~~  137 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPW-DSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGE-F-QFSLGEEIEEEKVLECRIFAIWFYK  137 (410)
T ss_pred             EEEEECCC-CCEeEEEEE-CCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCc-e-eechhhhccccCcccccccccccCC
Confidence            58999874 444322211 225578888888778888889999999998744 2 1111       11111222223333


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCe-EEEEEe-CCCe------------eEEEEcCCCEEE-EEcCCcEEEEEcCCCceeee
Q 021744          161 GSDKLYSGSKDETVRVWDCASGQ-CAGVIN-LGGE------------VGCMISEGPWIF-IGVTNFVKAWNTQTNTDLSL  225 (308)
Q Consensus       161 ~~~~l~s~s~dg~v~~wd~~~~~-~~~~~~-~~~~------------v~~~~~~~~~l~-~~~d~~i~~wd~~~~~~~~~  225 (308)
                      +|-.+++  .++.+.+-+-.... ..+.+. ....            +..+..+....+ ...++.+.+.+-...+.  +
T Consensus       138 ~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--i  213 (410)
T PF04841_consen  138 NGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--I  213 (410)
T ss_pred             CCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc--c
Confidence            4433333  33444433222211 111111 0000            001112222222 22334444333222111  1


Q ss_pred             eCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744          226 SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       226 ~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~  259 (308)
                       ...+++..|++||+  ++|.-..+|.+.+....-.
T Consensus       214 -~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~  248 (410)
T PF04841_consen  214 -DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS  248 (410)
T ss_pred             -cCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence             12358999999999  8888888999988876544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.91  E-value=0.34  Score=44.70  Aligned_cols=225  Identities=12%  Similarity=0.114  Sum_probs=115.4

Q ss_pred             CCCCCceEEecCC------CeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCC------CcE
Q 021744           23 GGGGGLSTADTRQ------KVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFN------NHS   89 (308)
Q Consensus        23 ~~~~~~~~s~s~d------~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d------~~i   89 (308)
                      +..+.+++.|+.+      ..+..+|..+..+..+.      +.+.+...+   ++++..+ .. ++|+.|      .++
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a------~m~~~r~~~---~~~~~~~-~lYv~GG~~~~~~~l~~v  351 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLA------PMPSPRCRV---GVAVLNG-KLYVVGGYDSGSDRLSSV  351 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecC------CCCcccccc---cEEEECC-EEEEEccccCCCcccceE
Confidence            4445667777766      46667776665222111      111111111   2344443 55 999999      356


Q ss_pred             EEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCC-----eEEEEEcCCCc-eeeeEeeCcccceEEEEE-eCCC
Q 021744           90 NNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCK-----FLHSWTVGDGF-KLLTQLEGHQKVVSGITL-PSGS  162 (308)
Q Consensus        90 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~-----~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~-~~~~  162 (308)
                      -.||..+.+......-.....-..+.....-.++.|+.||     .+..||..+.+ ..+..   ........+. .-++
T Consensus       352 e~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~---m~~~r~~~gv~~~~g  428 (571)
T KOG4441|consen  352 ERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP---MLTRRSGHGVAVLGG  428 (571)
T ss_pred             EEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC---CCcceeeeEEEEECC
Confidence            6777766654321111111112222222222448888875     46678877652 11111   1112222222 2256


Q ss_pred             CEEEEeeCCC------cEEEEeCCCCeEEEEEeCC---CeeEEEEcCCCEEEEEc-CC-----cEEEEEcCCCceeeee-
Q 021744          163 DKLYSGSKDE------TVRVWDCASGQCAGVINLG---GEVGCMISEGPWIFIGV-TN-----FVKAWNTQTNTDLSLS-  226 (308)
Q Consensus       163 ~~l~s~s~dg------~v~~wd~~~~~~~~~~~~~---~~v~~~~~~~~~l~~~~-d~-----~i~~wd~~~~~~~~~~-  226 (308)
                      ...+.|+.++      ++..||..+++-...-...   .......-++.+.++|+ ++     +|..||..+.+...+. 
T Consensus       429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~  508 (571)
T KOG4441|consen  429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP  508 (571)
T ss_pred             EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEccc
Confidence            6777887554      5678888876544332211   11223356777777765 54     4778999988766332 


Q ss_pred             -CCCCCEEEEEEeCC-EEEEEcCCCe-----EEEEEcCCCC
Q 021744          227 -GPVGQVYAMAVGND-LLFAGTQDGA-----ILAWKFNVTT  260 (308)
Q Consensus       227 -~~~~~v~~~~~~~~-~l~~g~~dg~-----i~iwd~~~~~  260 (308)
                       ........++...+ ..+.|+.||.     |..||..+.+
T Consensus       509 m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  509 MTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             CccccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence             12222233344445 7778887764     6666655543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.89  E-value=0.26  Score=43.07  Aligned_cols=185  Identities=12%  Similarity=0.085  Sum_probs=122.8

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEee--CCCeEEEEEcCCCceeee
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGE--KCKFLHSWTVGDGFKLLT  144 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~--~d~~i~iwd~~~~~~~~~  144 (308)
                      .+++++.+..  +....++.|.+.|.++.........+  .....+.+.+++..  ++..  .++.+.+.|..+. +.+.
T Consensus        78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~-~~~~  154 (381)
T COG3391          78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG--LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN-KVTA  154 (381)
T ss_pred             ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec--cCCceEEECCCCCEEEEEecccCCceEEEEeCCCC-eEEE
Confidence            6899999986  67767789999997555433222111  14667788888854  4444  4789999999888 5555


Q ss_pred             EeeCcccceEEEEEeCCCCEEEEe-eCCCcEEEEeCCCCeEEE-E----Ee-CCCee-EEEEcCCCEEEEEc--C--CcE
Q 021744          145 QLEGHQKVVSGITLPSGSDKLYSG-SKDETVRVWDCASGQCAG-V----IN-LGGEV-GCMISEGPWIFIGV--T--NFV  212 (308)
Q Consensus       145 ~~~~h~~~v~~~~~~~~~~~l~s~-s~dg~v~~wd~~~~~~~~-~----~~-~~~~v-~~~~~~~~~l~~~~--d--~~i  212 (308)
                      ....-..+ ..++++|+++.++.. ..++.|.+.|..+..... .    .. ...+. ..+.+++..+.+..  +  +.+
T Consensus       155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v  233 (381)
T COG3391         155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV  233 (381)
T ss_pred             EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence            55433344 899999999976555 478899999977665553 1    11 22332 23457888666543  3  588


Q ss_pred             EEEEcCCCceeee--eCCCCCEEEEEEeCC--EEEEE-cCCCeEEEEEcCCC
Q 021744          213 KAWNTQTNTDLSL--SGPVGQVYAMAVGND--LLFAG-TQDGAILAWKFNVT  259 (308)
Q Consensus       213 ~~wd~~~~~~~~~--~~~~~~v~~~~~~~~--~l~~g-~~dg~i~iwd~~~~  259 (308)
                      ...|..++.....  .........+.++|+  .+... +..+.+.+-|..+.
T Consensus       234 ~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         234 LKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             EEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            9999998877733  221114567888888  33333 44578999998875

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.89  E-value=0.2  Score=48.52  Aligned_cols=106  Identities=10%  Similarity=0.129  Sum_probs=65.9

Q ss_pred             EEEEEeCCCCEEEEe-----eCCCcEEEEeCCCCeEEEEEe-CC--CeeEEEEcCCCEEEEE----cCCcEEEEEcCCCc
Q 021744          154 SGITLPSGSDKLYSG-----SKDETVRVWDCASGQCAGVIN-LG--GEVGCMISEGPWIFIG----VTNFVKAWNTQTNT  221 (308)
Q Consensus       154 ~~~~~~~~~~~l~s~-----s~dg~v~~wd~~~~~~~~~~~-~~--~~v~~~~~~~~~l~~~----~d~~i~~wd~~~~~  221 (308)
                      +.+.|--||+++++.     ..-+.+++||-+ |..-..-. ..  ....+.-|.|.++++-    +++.|.+|.-+.-+
T Consensus       199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~  277 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR  277 (1265)
T ss_pred             ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence            578999999998773     333799999976 43222211 11  2222334778888852    36679998754332


Q ss_pred             e---e-eeeCCCCCEEEEEEeCC--EEEE---EcCCCeEEEEEcCCCC
Q 021744          222 D---L-SLSGPVGQVYAMAVGND--LLFA---GTQDGAILAWKFNVTT  260 (308)
Q Consensus       222 ~---~-~~~~~~~~v~~~~~~~~--~l~~---g~~dg~i~iwd~~~~~  260 (308)
                      .   . .+.....++..++|+.+  .|+.   ......|++|-+.+-.
T Consensus       278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            1   1 23333445899999987  6655   4455569999877643

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.87  E-value=0.00075  Score=60.01  Aligned_cols=188  Identities=9%  Similarity=0.013  Sum_probs=111.5

Q ss_pred             eeEEecCCC--e-eeccCCCcEEEEECCCCC-CcccccceeeeeeeeeeeecCC-ceEEee-----CCCeEEEEEcCCCc
Q 021744           71 AKRFANNTW--G-RNNNFNNHSNNYRAGNSK-NSNINNRAVIKTDILCRNWVQG-NCMYGE-----KCKFLHSWTVGDGF  140 (308)
Q Consensus        71 ~i~~s~~g~--~-~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~g~-----~d~~i~iwd~~~~~  140 (308)
                      |++..-+..  + +.|..+|.|-+-.+.... ...+....+.....+.+|.+-. +.++++     .|..+.|||+.++-
T Consensus        61 cva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~l  140 (783)
T KOG1008|consen   61 CVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLL  140 (783)
T ss_pred             eehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccccc
Confidence            555554433  3 888899999887774332 1111222233334555665543 223322     35679999998661


Q ss_pred             e-e--eeEeeC-cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC-CeEEEEEeCCC-eeEEEEc-CCCEEEEEcCCcEE
Q 021744          141 K-L--LTQLEG-HQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-GQCAGVINLGG-EVGCMIS-EGPWIFIGVTNFVK  213 (308)
Q Consensus       141 ~-~--~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~-~~~~~~~~~~~-~v~~~~~-~~~~l~~~~d~~i~  213 (308)
                      . +  ...+.+ -.....+++|..+.+++++|...+.++++|++. ......++... .-..+.| ...++++..|+.|.
T Consensus       141 tvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iA  220 (783)
T KOG1008|consen  141 TVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIA  220 (783)
T ss_pred             CCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCcee
Confidence            1 1  111111 334556888988888999999999999999983 22222222111 1112234 56788887899999


Q ss_pred             EEE-cCCCcee--eeeC----CCCCEEEEEEeCC---EEEEEcC-CCeEEEEEcCC
Q 021744          214 AWN-TQTNTDL--SLSG----PVGQVYAMAVGND---LLFAGTQ-DGAILAWKFNV  258 (308)
Q Consensus       214 ~wd-~~~~~~~--~~~~----~~~~v~~~~~~~~---~l~~g~~-dg~i~iwd~~~  258 (308)
                      +|| .+.-+..  .+..    ....+..++|+|.   .+++.+. .++|+++|+..
T Consensus       221 iwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  221 IWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             eccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            999 4433322  2211    1235899999998   6666554 56899999753

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.0086  Score=53.44  Aligned_cols=89  Identities=11%  Similarity=0.079  Sum_probs=71.9

Q ss_pred             cceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeE-EE--EcCCCEEEEEc-CCcEEEEEcCCCceee-
Q 021744          151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVG-CM--ISEGPWIFIGV-TNFVKAWNTQTNTDLS-  224 (308)
Q Consensus       151 ~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~-~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~-  224 (308)
                      ..|.-+.|+|.-.++|.+..+|.|.++.++ .+.+.++. ++.+++ ++  -+||++|++|. ||+|++.|..++..+. 
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            467788999999999999999999999988 88888888 666665 54  48999999998 9999999999987762 


Q ss_pred             -eeCCCCCEEEEEEeCC
Q 021744          225 -LSGPVGQVYAMAVGND  240 (308)
Q Consensus       225 -~~~~~~~v~~~~~~~~  240 (308)
                       .......|.++-|.+.
T Consensus       100 ~~~s~e~~is~~~w~~~  116 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDRI  116 (665)
T ss_pred             cccccccchheeecccc
Confidence             2334556777777643

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.78  E-value=0.14  Score=49.63  Aligned_cols=174  Identities=7%  Similarity=-0.092  Sum_probs=94.4

Q ss_pred             eeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEE
Q 021744          110 TDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI  188 (308)
Q Consensus       110 ~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~  188 (308)
                      .+..+.|..+... +.+...|.|.+-|..+..  +.....-...|.+++|+||++.++-.+.+.++.+-+- +..++...
T Consensus        70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E~  146 (1265)
T KOG1920|consen   70 EIVSVQFLADTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAEK  146 (1265)
T ss_pred             ceEEEEEecccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhcc
Confidence            4677777777644 778888999988887762  2222234578999999999999999888888777543 23332222


Q ss_pred             eC-------CCeeEEEEcCCCEEEEEcCCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEE-----EcCCCeEEE
Q 021744          189 NL-------GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFA-----GTQDGAILA  253 (308)
Q Consensus       189 ~~-------~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~-----g~~dg~i~i  253 (308)
                      ..       ...+..-+-....-+-|+.|.....+....+.. ....-.+.=++++|-.|  ++|+     ...-+.|++
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV  226 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV  226 (1265)
T ss_pred             ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence            11       111111122222222222222222211111111 10011223356888888  6666     333379999


Q ss_pred             EEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          254 WKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      ||-+ +    .+-..-......-.+ +|-|.|.++++..
T Consensus       227 ~drE-g----~Lns~se~~~~l~~~LsWkPsgs~iA~iq  260 (1265)
T KOG1920|consen  227 YDRE-G----ALNSTSEPVEGLQHSLSWKPSGSLIAAIQ  260 (1265)
T ss_pred             eccc-c----hhhcccCcccccccceeecCCCCeEeeee
Confidence            9987 2    211112222222334 8889988887543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.70  E-value=0.006  Score=35.33  Aligned_cols=35  Identities=23%  Similarity=0.167  Sum_probs=30.5

Q ss_pred             ccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEE
Q 021744          150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA  185 (308)
Q Consensus       150 ~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~  185 (308)
                      ...|..++|+|...++|.++.+|.|.++.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            457899999999999999999999999998 55543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.63  E-value=0.25  Score=45.52  Aligned_cols=188  Identities=14%  Similarity=0.139  Sum_probs=102.3

Q ss_pred             CCe-eeccCC------CcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCC------CeEEEEEcCCCc-eee
Q 021744           78 TWG-RNNNFN------NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKC------KFLHSWTVGDGF-KLL  143 (308)
Q Consensus        78 g~~-~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d------~~i~iwd~~~~~-~~~  143 (308)
                      +.. +.|+.+      .++..+|..+++...............+....+..+++|+.|      ..+..||..+.. ..+
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~  364 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV  364 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence            444 777766      357888887664332222222222333444444355888888      456788887762 111


Q ss_pred             eEeeCcccceEEEEEeCCCCEEEEeeCCC-----cEEEEeCCCCeEEEEEeCC---CeeEEEEcCCCEEEEEc-C-----
Q 021744          144 TQLEGHQKVVSGITLPSGSDKLYSGSKDE-----TVRVWDCASGQCAGVINLG---GEVGCMISEGPWIFIGV-T-----  209 (308)
Q Consensus       144 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg-----~v~~wd~~~~~~~~~~~~~---~~v~~~~~~~~~l~~~~-d-----  209 (308)
                      ..+...... ..++.. ++...+.|+.||     +|-.||..+.+--..-...   ........++++.++|+ +     
T Consensus       365 a~M~~~R~~-~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~  442 (571)
T KOG4441|consen  365 APMNTKRSD-FGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNC  442 (571)
T ss_pred             CCccCcccc-ceeEEE-CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccc
Confidence            112211111 122222 567778888886     4677887765433222221   12223356777777765 3     


Q ss_pred             -CcEEEEEcCCCceee---eeCCCCCEEEEEEeCC-EEEEEcCCCe-----EEEEEcCCCCcccccceecc
Q 021744          210 -NFVKAWNTQTNTDLS---LSGPVGQVYAMAVGND-LLFAGTQDGA-----ILAWKFNVTTNCFEPAASLK  270 (308)
Q Consensus       210 -~~i~~wd~~~~~~~~---~~~~~~~v~~~~~~~~-~l~~g~~dg~-----i~iwd~~~~~~~~~~~~~~~  270 (308)
                       .++..||..+++...   +...... ..++...+ +.+.|+.|+.     |..||..+.+.  ..+..+.
T Consensus       443 l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W--~~v~~m~  510 (571)
T KOG4441|consen  443 LNSVECYDPETNTWTLIAPMNTRRSG-FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQW--TMVAPMT  510 (571)
T ss_pred             cceEEEEcCCCCceeecCCccccccc-ceEEEECCEEEEECCccCCCccceEEEEcCCCCce--eEcccCc
Confidence             357889998886552   2222222 23555556 7777887763     77788877642  4444343

>PHA03098 kelch-like protein; Provisional

Probab=96.63  E-value=0.36  Score=44.36  Aligned_cols=200  Identities=14%  Similarity=0.118  Sum_probs=95.6

Q ss_pred             EEecCCCe-eeccCCC------cEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCC-----CeEEEEEcCCC
Q 021744           73 RFANNTWG-RNNNFNN------HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKC-----KFLHSWTVGDG  139 (308)
Q Consensus        73 ~~s~~g~~-~s~~~d~------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d-----~~i~iwd~~~~  139 (308)
                      +...++.. +.|+.++      .+..||..+.+............-..+. ..++.. +.|+.+     ..+..||+.+.
T Consensus       290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~  368 (534)
T PHA03098        290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT-VFNNRIYVIGGIYNSISLNTVESWKPGES  368 (534)
T ss_pred             EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE-EECCEEEEEeCCCCCEecceEEEEcCCCC
Confidence            33445555 7777543      4667777665432221111111111112 223434 677754     35677888765


Q ss_pred             c-eeeeEeeCcccceEEEEEeCCCCEEEEeeCC------CcEEEEeCCCCeEEEEEeCCC---eeEEEEcCCCEEEEEc-
Q 021744          140 F-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKD------ETVRVWDCASGQCAGVINLGG---EVGCMISEGPWIFIGV-  208 (308)
Q Consensus       140 ~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d------g~v~~wd~~~~~~~~~~~~~~---~v~~~~~~~~~l~~~~-  208 (308)
                      . +....+. +...-.+++. -++...+.|+.+      ..+..||..+.+-...-..+.   ...++..++++++.|+ 
T Consensus       369 ~W~~~~~lp-~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~  446 (534)
T PHA03098        369 KWREEPPLI-FPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGI  446 (534)
T ss_pred             ceeeCCCcC-cCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCc
Confidence            2 1111111 1111112222 245566666632      457888988764332211111   1123345666666654 


Q ss_pred             C--------CcEEEEEcCCCceeeeeC---CCCCEEEEEEeCC-EEEEEcCC-----CeEEEEEcCCCCcccccceeccc
Q 021744          209 T--------NFVKAWNTQTNTDLSLSG---PVGQVYAMAVGND-LLFAGTQD-----GAILAWKFNVTTNCFEPAASLKV  271 (308)
Q Consensus       209 d--------~~i~~wd~~~~~~~~~~~---~~~~v~~~~~~~~-~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~  271 (308)
                      +        ..+.+||..+.+-..+..   ..... +++...+ +++.|+.+     ..|.+||..+..  +..+..+..
T Consensus       447 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~  523 (534)
T PHA03098        447 SYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA-SLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT--WTLFCKFPK  523 (534)
T ss_pred             cCCCCCcccceEEEecCCCCceeeCCCCCcccccc-eEEEECCEEEEEcCCcCCcccceeEEEeCCCCE--EEecCCCcc
Confidence            2        138889998876553321   11122 2233344 55666653     468888888754  344554444


Q ss_pred             cCCCeEE
Q 021744          272 HTDSNRA  278 (308)
Q Consensus       272 ~~~~v~~  278 (308)
                      ....+..
T Consensus       524 ~~~~~~~  530 (534)
T PHA03098        524 VIGSLEK  530 (534)
T ss_pred             cccceee
Confidence            4444443

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=96.62  E-value=0.15  Score=36.64  Aligned_cols=105  Identities=14%  Similarity=0.173  Sum_probs=75.4

Q ss_pred             EEEEeCCCCEEEEeeCCCcEEEEeCCC--------CeEEEEEeCCCeeEEEE-------cCCCEEEEEcCCcEEEEEcCC
Q 021744          155 GITLPSGSDKLYSGSKDETVRVWDCAS--------GQCAGVINLGGEVGCMI-------SEGPWIFIGVTNFVKAWNTQT  219 (308)
Q Consensus       155 ~~~~~~~~~~l~s~s~dg~v~~wd~~~--------~~~~~~~~~~~~v~~~~-------~~~~~l~~~~d~~i~~wd~~~  219 (308)
                      .-.|+.....|+.++.-|+|.|++...        ...+..+.....++++.       .....|+.|+...+..||...
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~   82 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN   82 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence            345666666788888999999998773        34567777888888873       135688899999999999998


Q ss_pred             CceeeeeCCCCCEEEEEEe-----CCEEEEEcCCCeEEEEEcCCC
Q 021744          220 NTDLSLSGPVGQVYAMAVG-----NDLLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       220 ~~~~~~~~~~~~v~~~~~~-----~~~l~~g~~dg~i~iwd~~~~  259 (308)
                      ...+-.+.-.+.|+++.+-     +.-++..+.+-.|.-||....
T Consensus        83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~  127 (136)
T PF14781_consen   83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN  127 (136)
T ss_pred             CchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence            8877666666788888873     233333444557777776654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.51  E-value=0.42  Score=40.30  Aligned_cols=193  Identities=12%  Similarity=0.074  Sum_probs=103.4

Q ss_pred             ccCCCCceeEEEeecCCCCCCCC--CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc---eeEEecC
Q 021744            3 FDAHGGNKRVFHRLGGGGGDGGG--GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA---AKRFANN   77 (308)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~---~i~~s~~   77 (308)
                      ++.+.|..++|...+........  +..|+++.  .-+++++...+...   .     ....+..+....   .+.+.|+
T Consensus        52 ~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~---t-----~~~~~~~~~~~~r~ND~~v~pd  121 (307)
T COG3386          52 LDPETGKKRVFPSPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKI---T-----LLAEPEDGLPLNRPNDGVVDPD  121 (307)
T ss_pred             ecCCcCceEEEECCCCcccceeecCCCeEEEEc--cccEEEeccCCcee---E-----EeccccCCCCcCCCCceeEcCC
Confidence            45556668888887666333222  33444443  23444444333110   0     111111111111   5788888


Q ss_pred             CCe-eeccC------C---CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCC--C----
Q 021744           78 TWG-RNNNF------N---NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGD--G----  139 (308)
Q Consensus        78 g~~-~s~~~------d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~--~----  139 (308)
                      |.+ ++-..      +   ..=.||-+............+-...+.++|+|++..  ++-+..+.|+-|+...  +    
T Consensus       122 G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~  201 (307)
T COG3386         122 GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG  201 (307)
T ss_pred             CCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC
Confidence            888 44333      0   112455554221111112222333677899999955  5555668888887652  1    


Q ss_pred             ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCC-cEEEEeCCCCeEEEEEeCC-CeeEEEE---cCCCEEEE
Q 021744          140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE-TVRVWDCASGQCAGVINLG-GEVGCMI---SEGPWIFI  206 (308)
Q Consensus       140 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg-~v~~wd~~~~~~~~~~~~~-~~v~~~~---~~~~~l~~  206 (308)
                      ......+....+..-.++...+|.+.+++-.+| .|..|+.. ++.+..+..+ ..+++.+   ++.+.|++
T Consensus       202 ~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~i  272 (307)
T COG3386         202 RRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYI  272 (307)
T ss_pred             cceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence            111222233456667888888888876555554 89999988 9999988855 4444442   34455554

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.47  E-value=0.57  Score=41.40  Aligned_cols=49  Identities=20%  Similarity=0.308  Sum_probs=36.7

Q ss_pred             eEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744          130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       130 ~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~  181 (308)
                      .|+||+....  .+.++.-..+.|.++.|+.+ +.|+....||.++++|+..
T Consensus        62 ~I~iys~sG~--ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   62 SIQIYSSSGK--LLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             EEEEECCCCC--EeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCC
Confidence            5888887654  34444433489999999874 5677788999999999873

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.44  E-value=0.0058  Score=56.41  Aligned_cols=97  Identities=16%  Similarity=0.108  Sum_probs=68.4

Q ss_pred             EcCCCEEEEEc-----CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecc
Q 021744          198 ISEGPWIFIGV-----TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK  270 (308)
Q Consensus       198 ~~~~~~l~~~~-----d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~  270 (308)
                      .|...++++++     .|.|.+| +.+|++.+-...+-.+++++|+|.  .|+.|-.-|.+.+|...+.    +......
T Consensus        24 HPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~----e~htv~~   98 (1416)
T KOG3617|consen   24 HPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT----ETHTVVE   98 (1416)
T ss_pred             CCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCc----eeeeecc
Confidence            34455555432     4577777 456666533333445678999999  7888889999999998885    4444556


Q ss_pred             ccCCCeEE-EEecCCCeEEEee---ceEEEEee
Q 021744          271 VHTDSNRA-HFSRDVTSLLGSV---SFIMFIGQ  299 (308)
Q Consensus       271 ~~~~~v~~-~~s~d~~~l~~s~---s~~i~~~~  299 (308)
                      .|..++.. .||++|..|++.-   ++.+|-..
T Consensus        99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            89999999 9999999998654   55555544

>PHA02713 hypothetical protein; Provisional

Probab=96.37  E-value=0.15  Score=46.93  Aligned_cols=148  Identities=7%  Similarity=0.023  Sum_probs=75.2

Q ss_pred             EEecCCCe-eeccCCC-----cEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCC-----------------
Q 021744           73 RFANNTWG-RNNNFNN-----HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKC-----------------  128 (308)
Q Consensus        73 ~~s~~g~~-~s~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d-----------------  128 (308)
                      ...-+|.. +.|+.++     ++..||..+.+............-..+. ..++.. +.|+.+                 
T Consensus       347 ~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~  425 (557)
T PHA02713        347 LAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDME  425 (557)
T ss_pred             EEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCEEEEEeCCCccccccccccccccccc
Confidence            33456666 8888764     4788998765432211111111111111 224443 666654                 


Q ss_pred             ------CeEEEEEcCCCc-eeeeEeeCcccceEEEEEeCCCCEEEEeeCC------CcEEEEeCCC-CeEE--EEEeC-C
Q 021744          129 ------KFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKD------ETVRVWDCAS-GQCA--GVINL-G  191 (308)
Q Consensus       129 ------~~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d------g~v~~wd~~~-~~~~--~~~~~-~  191 (308)
                            ..+..||+.+.. ..+..+...... .+++.. +++..+.|+.+      ..+..||.++ .+-.  ..+.. .
T Consensus       426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r  503 (557)
T PHA02713        426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL  503 (557)
T ss_pred             ccccccceEEEECCCCCeEeecCCCCccccc-CcEEEE-CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence                  347788887762 112222111111 123322 45555666654      2467899887 4432  22221 1


Q ss_pred             CeeEEEEcCCCEEEEEc-CC--cEEEEEcCCCcee
Q 021744          192 GEVGCMISEGPWIFIGV-TN--FVKAWNTQTNTDL  223 (308)
Q Consensus       192 ~~v~~~~~~~~~l~~~~-d~--~i~~wd~~~~~~~  223 (308)
                      ........++++.++|+ ++  .+..||..+.+-.
T Consensus       504 ~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        504 SALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             ccceeEEECCEEEEEeeecceeehhhcCccccccc
Confidence            12233356788877776 66  7788888887655

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.24  E-value=0.012  Score=46.06  Aligned_cols=133  Identities=15%  Similarity=0.116  Sum_probs=76.2

Q ss_pred             EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEE-EEEe-CCCeeEEEEcC
Q 021744          123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA-GVIN-LGGEVGCMISE  200 (308)
Q Consensus       123 ~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~-~~~~-~~~~v~~~~~~  200 (308)
                      ...+.++.|+-++++..+...+.-.-|...   ...-.-+..++.|+.+|.|.+|+..-.-.. .... ....+.+..|.
T Consensus        34 ~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~  110 (238)
T KOG2444|consen   34 RATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN  110 (238)
T ss_pred             ccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence            345667777777765432111111112222   122223467999999999999988732111 1111 33455566665


Q ss_pred             CC---EEEEEc-CCcEEEEEcCCCcee-eeeCCC-CCEEEEEEe-CC-EEEEE--cCCCeEEEEEcCC
Q 021744          201 GP---WIFIGV-TNFVKAWNTQTNTDL-SLSGPV-GQVYAMAVG-ND-LLFAG--TQDGAILAWKFNV  258 (308)
Q Consensus       201 ~~---~l~~~~-d~~i~~wd~~~~~~~-~~~~~~-~~v~~~~~~-~~-~l~~g--~~dg~i~iwd~~~  258 (308)
                      ++   +..++. ++.|+.|+....+.. ....|. .++..+..+ .+ .++.+  |.|..++.|++..
T Consensus       111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            43   444554 999999999888777 444555 344433333 33 66666  6777777887764

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.18  E-value=0.18  Score=48.33  Aligned_cols=87  Identities=21%  Similarity=0.240  Sum_probs=62.9

Q ss_pred             eEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE---
Q 021744          122 CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM---  197 (308)
Q Consensus       122 ~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~---  197 (308)
                      .+.|+..|.+-..|+...-.+...=+.-.++|++++|+.+|..++.|-.+|.|.+||+.+++.++.+. +..+...+   
T Consensus       102 ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v  181 (1206)
T KOG2079|consen  102 IVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFV  181 (1206)
T ss_pred             EEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEE
Confidence            36677888888888766412222222346899999999999999999999999999999999988887 45554443   


Q ss_pred             --EcCCCEEEEEc
Q 021744          198 --ISEGPWIFIGV  208 (308)
Q Consensus       198 --~~~~~~l~~~~  208 (308)
                        ..++..+.++.
T Consensus       182 ~~t~~nS~llt~D  194 (1206)
T KOG2079|consen  182 GRTSQNSKLLTSD  194 (1206)
T ss_pred             EEeCCCcEEEEcc
Confidence              24455455554

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.15  E-value=0.77  Score=39.71  Aligned_cols=83  Identities=11%  Similarity=-0.070  Sum_probs=52.1

Q ss_pred             CCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeee-EeeC-------c-------
Q 021744           85 FNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLT-QLEG-------H-------  149 (308)
Q Consensus        85 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~-~~~~-------h-------  149 (308)
                      ..+.+.|+|+++++..  .+...........++|+|..++--.++.|.+++..++ +..+ +..|       -       
T Consensus        21 ~~~~y~i~d~~~~~~~--~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~-~~~~lT~dg~~~i~nG~~dwvyeE   97 (353)
T PF00930_consen   21 FKGDYYIYDIETGEIT--PLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATG-QETQLTTDGEPGIYNGVPDWVYEE   97 (353)
T ss_dssp             EEEEEEEEETTTTEEE--ESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTS-EEEESES--TTTEEESB--HHHHH
T ss_pred             cceeEEEEecCCCceE--ECcCCccccccceeecCCCeeEEEecCceEEEECCCC-CeEEeccccceeEEcCccceeccc
Confidence            3456899999886443  2222244578889999998866667889999998776 2222 2222       0       


Q ss_pred             --ccceEEEEEeCCCCEEEEeeC
Q 021744          150 --QKVVSGITLPSGSDKLYSGSK  170 (308)
Q Consensus       150 --~~~v~~~~~~~~~~~l~s~s~  170 (308)
                        -+.-..+-|+||+++|+....
T Consensus        98 Ev~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   98 EVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             HTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             cccccccceEECCCCCEEEEEEE
Confidence              112356789999998876654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.07  E-value=0.19  Score=44.42  Aligned_cols=133  Identities=15%  Similarity=0.189  Sum_probs=87.8

Q ss_pred             EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCC--E-----EEEeeCCCcEEEEeCCCC-e-EEEE-----E
Q 021744          123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD--K-----LYSGSKDETVRVWDCASG-Q-CAGV-----I  188 (308)
Q Consensus       123 ~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~-----l~s~s~dg~v~~wd~~~~-~-~~~~-----~  188 (308)
                      ..+.....++--|++.+ +.+.+.+-|.+ |.-+.+.|+..  .     -+.|-.|..|.-||.+-. . .+..     +
T Consensus       350 ~~~~~~~~l~klDIE~G-KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  350 MDGGEQDKLYKLDIERG-KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             eCCCCcCcceeeecccc-eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            34556677888899999 88888887766 77788877642  2     244556888999998842 2 1111     1


Q ss_pred             eCCCeeEEEE-cCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcC
Q 021744          189 NLGGEVGCMI-SEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFN  257 (308)
Q Consensus       189 ~~~~~v~~~~-~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~  257 (308)
                      .......|+. -...++++|+ +|.|++||--..... .+++...+|..+..+.+ -.+.|+.+..+.+.++.
T Consensus       428 ~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  428 STKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             ccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence            1233445553 3344566555 999999997333333 57788889999999888 44444556688877754

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.02  E-value=1  Score=39.88  Aligned_cols=185  Identities=9%  Similarity=-0.000  Sum_probs=104.1

Q ss_pred             eeEEecCCCe--eeccCC----CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEee--C---------CCeEE
Q 021744           71 AKRFANNTWG--RNNNFN----NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGE--K---------CKFLH  132 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~--~---------d~~i~  132 (308)
                      ...++|+|++  ++-+..    .+|++.|+++++.+......  .....+.|.+++.. +...  .         ...|+
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            5788999998  333333    45999999988655221111  11223788888754 3322  1         34588


Q ss_pred             EEEcCCCcee-eeEeeCcccc--eEEEEEeCCCCEEEEeeC-C---CcEEEEeCCCC-----eEEEEEeC-CCeeEEE-E
Q 021744          133 SWTVGDGFKL-LTQLEGHQKV--VSGITLPSGSDKLYSGSK-D---ETVRVWDCASG-----QCAGVINL-GGEVGCM-I  198 (308)
Q Consensus       133 iwd~~~~~~~-~~~~~~h~~~--v~~~~~~~~~~~l~s~s~-d---g~v~~wd~~~~-----~~~~~~~~-~~~v~~~-~  198 (308)
                      .|.+.+.... ...+......  ...+..++++++|+..+. .   ..+.+.++..+     +....... ......+ .
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~  285 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH  285 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence            8888876322 2233333322  567888999998764333 2   34777788764     33333332 2332333 3


Q ss_pred             cCCCEEEEEc----CCcEEEEEcCCCce---e-eeeCCCC--CEEEEEEeCC-EEEEEcCCC--eEEEEEcC
Q 021744          199 SEGPWIFIGV----TNFVKAWNTQTNTD---L-SLSGPVG--QVYAMAVGND-LLFAGTQDG--AILAWKFN  257 (308)
Q Consensus       199 ~~~~~l~~~~----d~~i~~wd~~~~~~---~-~~~~~~~--~v~~~~~~~~-~l~~g~~dg--~i~iwd~~  257 (308)
                      ..+.+++.+.    .+.|...++.....   . .+..+..  .+..+....+ +++.-..++  .|+++++.
T Consensus       286 ~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  286 HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred             cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence            3444555432    45777788887653   2 4445554  5777887778 666666665  47888888

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.01  E-value=0.028  Score=44.07  Aligned_cols=99  Identities=9%  Similarity=0.068  Sum_probs=60.3

Q ss_pred             eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeec--CCce-EEeeCCCeEEEEEcCCCceeeeEeeCcc-cceEEE
Q 021744           81 RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWV--QGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQ-KVVSGI  156 (308)
Q Consensus        81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~-~~v~~~  156 (308)
                      +.|+.++.|.+|..+--.... ...........+.+..  ++.+ .+++.|+.|+.|++... +.+...-.|+ .++..+
T Consensus        74 ~vG~~dg~v~~~n~n~~g~~~-d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h~~~~~e~~  151 (238)
T KOG2444|consen   74 MVGTSDGAVYVFNWNLEGAHS-DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN-KVLGYVGQHNFESGEEL  151 (238)
T ss_pred             EeecccceEEEecCCccchHH-HhhhcccccceeccccccccceeEEeccCCceeeeccccC-ceeeeeccccCCCccee
Confidence            889999999999885111100 0111111122222222  2235 77889999999999887 5565555666 555566


Q ss_pred             EEeCCCCEEEEe--eCCCcEEEEeCCC
Q 021744          157 TLPSGSDKLYSG--SKDETVRVWDCAS  181 (308)
Q Consensus       157 ~~~~~~~~l~s~--s~dg~v~~wd~~~  181 (308)
                      .....++.+++.  |.|..++.|++..
T Consensus       152 ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  152 IVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             EEecCCceEEeeccccchhhhhcchhh
Confidence            666566666666  6677777777664

>PHA03098 kelch-like protein; Provisional

Probab=95.99  E-value=0.82  Score=42.00  Aligned_cols=149  Identities=12%  Similarity=0.055  Sum_probs=71.6

Q ss_pred             cCCCe-eeccCC-----CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCC------CeEEEEEcCCCc-e
Q 021744           76 NNTWG-RNNNFN-----NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKC------KFLHSWTVGDGF-K  141 (308)
Q Consensus        76 ~~g~~-~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d------~~i~iwd~~~~~-~  141 (308)
                      -++.. +.|+.+     .++..||..+.+............-..+. ..++.. +.|+.+      ..+..||+.+.. .
T Consensus       341 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        341 FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            35666 777765     34677887655432211111111111122 223433 666632      467889987652 1


Q ss_pred             eeeEeeCcccceEEEEEeCCCCEEEEeeCC--------CcEEEEeCCCCeEEEEEeCC---CeeEEEEcCCCEEEEEc-C
Q 021744          142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKD--------ETVRVWDCASGQCAGVINLG---GEVGCMISEGPWIFIGV-T  209 (308)
Q Consensus       142 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d--------g~v~~wd~~~~~~~~~~~~~---~~v~~~~~~~~~l~~~~-d  209 (308)
                      .+..+...... .+++. .++...+.|+.+        ..+.+||..+.+-...-...   ........++++++.|+ +
T Consensus       420 ~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~  497 (534)
T PHA03098        420 KGSPLPISHYG-GCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDK  497 (534)
T ss_pred             ecCCCCccccC-ceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCc
Confidence            11111111111 12222 245555666543        23888898876533221111   11122234667666664 2


Q ss_pred             -----CcEEEEEcCCCceeeeeC
Q 021744          210 -----NFVKAWNTQTNTDLSLSG  227 (308)
Q Consensus       210 -----~~i~~wd~~~~~~~~~~~  227 (308)
                           +.+.+||..+.+-..+..
T Consensus       498 ~~~~~~~v~~yd~~~~~W~~~~~  520 (534)
T PHA03098        498 YEYYINEIEVYDDKTNTWTLFCK  520 (534)
T ss_pred             CCcccceeEEEeCCCCEEEecCC
Confidence                 368889988876554433

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.90  E-value=0.034  Score=32.16  Aligned_cols=31  Identities=29%  Similarity=0.456  Sum_probs=27.3

Q ss_pred             CCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCC
Q 021744          228 PVGQVYAMAVGND--LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       228 ~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~  258 (308)
                      ....|..++|+|.  ++|.++.+|.|.++.+.-
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            3457999999999  999999999999999943

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.84  E-value=1.1  Score=38.75  Aligned_cols=167  Identities=14%  Similarity=0.175  Sum_probs=74.7

Q ss_pred             CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCC-CEEEEeeC---CC-cEEEEeCCC-CeEEEEEe--CCCeeEE---
Q 021744          128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSK---DE-TVRVWDCAS-GQCAGVIN--LGGEVGC---  196 (308)
Q Consensus       128 d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~---dg-~v~~wd~~~-~~~~~~~~--~~~~v~~---  196 (308)
                      ...|...|+.++ +. ..+..-+..+..+.|+|.. .+|+-|-+   +. .-++|-+++ +...+.+.  .+..+..   
T Consensus       167 ~~~i~~idl~tG-~~-~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEf  244 (386)
T PF14583_consen  167 HCRIFTIDLKTG-ER-KVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEF  244 (386)
T ss_dssp             -EEEEEEETTT---E-EEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEE
T ss_pred             CceEEEEECCCC-ce-eEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccc
Confidence            345666677777 33 3333356778889999865 44555543   22 236776654 33333333  1222221   


Q ss_pred             EEcCCCEEE-EEc-----CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC-EEEEEc-CC----------------CeEE
Q 021744          197 MISEGPWIF-IGV-----TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGT-QD----------------GAIL  252 (308)
Q Consensus       197 ~~~~~~~l~-~~~-----d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~-~d----------------g~i~  252 (308)
                      +.++|..|. .+.     +..|.-+|+.+++...+..- .+..-+-.++| .|++|. .|                -.|+
T Consensus       245 w~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~  323 (386)
T PF14583_consen  245 WVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY  323 (386)
T ss_dssp             E-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred             ccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence            247887665 332     33577788888765533221 13344555667 444332 22                1466


Q ss_pred             EEEcCCCCccccccee-------ccccCCC--eEEEEecCCCeEE-Eee---ceEEEEee
Q 021744          253 AWKFNVTTNCFEPAAS-------LKVHTDS--NRAHFSRDVTSLL-GSV---SFIMFIGQ  299 (308)
Q Consensus       253 iwd~~~~~~~~~~~~~-------~~~~~~~--v~~~~s~d~~~l~-~s~---s~~i~~~~  299 (308)
                      ++++..+..  ..+..       +.++...  ..-.|+|||++++ .|-   ...||...
T Consensus       324 ~~~~~~~~~--~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  324 LFDVEAGRF--RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             EEETTTTEE--EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             EeccccCce--eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence            777776432  11111       1222222  2229999999988 443   45566544

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.66  E-value=1.1  Score=37.74  Aligned_cols=199  Identities=14%  Similarity=0.086  Sum_probs=105.5

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCeeeccCCCcEEEEECCCCCCc--c-
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNS--N-  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~--~-  101 (308)
                      .+.++.+.-..+.|.-|+..++..       +..+.+..    -.....+...+.++++..  -+.+++.+++...  . 
T Consensus        36 ~~~L~w~DI~~~~i~r~~~~~g~~-------~~~~~p~~----~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~  102 (307)
T COG3386          36 RGALLWVDILGGRIHRLDPETGKK-------RVFPSPGG----FSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLA  102 (307)
T ss_pred             CCEEEEEeCCCCeEEEecCCcCce-------EEEECCCC----cccceeecCCCeEEEEcc--ccEEEeccCCceeEEec
Confidence            345677777888888888775511       00111110    011234444444433222  2455665433221  0 


Q ss_pred             cccceee-eeeeeeeeecCCceEEeeCC------------CeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEe
Q 021744          102 INNRAVI-KTDILCRNWVQGNCMYGEKC------------KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG  168 (308)
Q Consensus       102 ~~~~~~~-~~~~~~~~~~~~~~~~g~~d------------~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  168 (308)
                      ....... ...+.+...++|.+.++...            |.++.++. .+ ..++.+..+-..-+.++|+||++.|+.+
T Consensus       103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g-~~~~l~~~~~~~~NGla~SpDg~tly~a  180 (307)
T COG3386         103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG-GVVRLLDDDLTIPNGLAFSPDGKTLYVA  180 (307)
T ss_pred             cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC-CEEEeecCcEEecCceEECCCCCEEEEE
Confidence            0111111 12445666677766444332            34555554 33 4455555556666899999999877655


Q ss_pred             e-CCCcEEEEeCCC--Ce---EE-EEEe-C-CCe--eEEEEcCCCEEEEEc-CC-cEEEEEcCCCcee-eeeCCCCCEEE
Q 021744          169 S-KDETVRVWDCAS--GQ---CA-GVIN-L-GGE--VGCMISEGPWIFIGV-TN-FVKAWNTQTNTDL-SLSGPVGQVYA  234 (308)
Q Consensus       169 s-~dg~v~~wd~~~--~~---~~-~~~~-~-~~~--v~~~~~~~~~l~~~~-d~-~i~~wd~~~~~~~-~~~~~~~~v~~  234 (308)
                      . ..+.|.-|++..  +.   .. .... . .+.  -.++-.+|.+.+++. .+ .|..|+.. ++++ .+.-+...+++
T Consensus       181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~  259 (307)
T COG3386         181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN  259 (307)
T ss_pred             eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence            4 457888887752  11   11 1111 1 111  123346677765444 44 99999998 6666 55555577888


Q ss_pred             EEEeC
Q 021744          235 MAVGN  239 (308)
Q Consensus       235 ~~~~~  239 (308)
                      ++|-.
T Consensus       260 ~~FgG  264 (307)
T COG3386         260 PAFGG  264 (307)
T ss_pred             ceEeC
Confidence            88865

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.58  E-value=1.5  Score=38.44  Aligned_cols=213  Identities=15%  Similarity=0.098  Sum_probs=126.8

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEe
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQL  146 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~  146 (308)
                      .+.+.|++..  ++-.....+.+-+.. ..........-......+..++.+..  +....++.|.+.|..+. ......
T Consensus        35 ~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~-~~~~~~  112 (381)
T COG3391          35 GVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN-TVLGSI  112 (381)
T ss_pred             eeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCccc-ceeeEe
Confidence            4788888855  333333344444443 11110000000012345566666654  55556899999997776 444443


Q ss_pred             eCcccceEEEEEeCCCCEEEEeeC---CCcEEEEeCCCCeEEEEEeCC-Cee-EEEEcCCCEEEEEc--CCcEEEEEcCC
Q 021744          147 EGHQKVVSGITLPSGSDKLYSGSK---DETVRVWDCASGQCAGVINLG-GEV-GCMISEGPWIFIGV--TNFVKAWNTQT  219 (308)
Q Consensus       147 ~~h~~~v~~~~~~~~~~~l~s~s~---dg~v~~wd~~~~~~~~~~~~~-~~v-~~~~~~~~~l~~~~--d~~i~~wd~~~  219 (308)
                      .-- .....++++++++.+..+..   ++++.+.|..+.+...+.... .+. ..+.++++.+.+..  ++.|.+.|..+
T Consensus       113 ~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~  191 (381)
T COG3391         113 PVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSG  191 (381)
T ss_pred             eec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCC
Confidence            322 26678999999988766655   689999999999888886633 333 23468888777654  88999999777


Q ss_pred             Cceee-----eeCCCCCEEEEEEeCC--EEE-EEcC--CCeEEEEEcCCCCccccccee-ccccC-CCeEEEEecCCCeE
Q 021744          220 NTDLS-----LSGPVGQVYAMAVGND--LLF-AGTQ--DGAILAWKFNVTTNCFEPAAS-LKVHT-DSNRAHFSRDVTSL  287 (308)
Q Consensus       220 ~~~~~-----~~~~~~~v~~~~~~~~--~l~-~g~~--dg~i~iwd~~~~~~~~~~~~~-~~~~~-~~v~~~~s~d~~~l  287 (308)
                      .....     ..........+.++|+  .+. +-..  ++.+...|..++    ..... +.... .+....++|+|.++
T Consensus       192 ~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~----~v~~~~~~~~~~~~~~v~~~p~g~~~  267 (381)
T COG3391         192 NSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG----NVTATDLPVGSGAPRGVAVDPAGKAA  267 (381)
T ss_pred             cceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc----eEEEeccccccCCCCceeECCCCCEE
Confidence            65553     1122234466888888  222 2222  368888898885    22222 22222 23333889999988


Q ss_pred             EEe
Q 021744          288 LGS  290 (308)
Q Consensus       288 ~~s  290 (308)
                      .+.
T Consensus       268 yv~  270 (381)
T COG3391         268 YVA  270 (381)
T ss_pred             EEE
Confidence            765

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.52  E-value=0.62  Score=40.83  Aligned_cols=106  Identities=18%  Similarity=0.302  Sum_probs=68.1

Q ss_pred             ceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEE-------------------------------------------EE
Q 021744          152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG-------------------------------------------VI  188 (308)
Q Consensus       152 ~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~-------------------------------------------~~  188 (308)
                      .|+.+.+.++...|+.+...|.|-+|.....+.-.                                           .+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            47788888888888888888888887543211110                                           01


Q ss_pred             e-CCCeeEEE-EcCCCEEEEEc-CCcEEEEEcCCCcee---eeeC------CCCCEEEEEEe-----CC-----EEEEEc
Q 021744          189 N-LGGEVGCM-ISEGPWIFIGV-TNFVKAWNTQTNTDL---SLSG------PVGQVYAMAVG-----ND-----LLFAGT  246 (308)
Q Consensus       189 ~-~~~~v~~~-~~~~~~l~~~~-d~~i~~wd~~~~~~~---~~~~------~~~~v~~~~~~-----~~-----~l~~g~  246 (308)
                      . ..++++++ .++=.++++|+ +|.+.+.|+|....+   .+..      ....++++.|.     .|     .+++|+
T Consensus        83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT  162 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT  162 (395)
T ss_dssp             ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred             eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence            1 22445555 35667899888 899999999877655   1222      23468888886     12     789999


Q ss_pred             CCCeEEEEEcC
Q 021744          247 QDGAILAWKFN  257 (308)
Q Consensus       247 ~dg~i~iwd~~  257 (308)
                      ..|.+.+|.+.
T Consensus       163 n~G~v~~fkIl  173 (395)
T PF08596_consen  163 NSGNVLTFKIL  173 (395)
T ss_dssp             TTSEEEEEEEE
T ss_pred             CCCCEEEEEEe
Confidence            99999999886

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.49  E-value=1  Score=41.60  Aligned_cols=93  Identities=14%  Similarity=0.144  Sum_probs=60.8

Q ss_pred             cCCCEEEEEcC-CcEEEEEcCCCcee--eeeCCCCCEEEEEEeC--C--EEEEEcCCCeEEEEEc-----CCCCcccccc
Q 021744          199 SEGPWIFIGVT-NFVKAWNTQTNTDL--SLSGPVGQVYAMAVGN--D--LLFAGTQDGAILAWKF-----NVTTNCFEPA  266 (308)
Q Consensus       199 ~~~~~l~~~~d-~~i~~wd~~~~~~~--~~~~~~~~v~~~~~~~--~--~l~~g~~dg~i~iwd~-----~~~~~~~~~~  266 (308)
                      +-++..++..+ ..+.+||.+.+...  ......+.|..+.|..  +  .+++-+..+.|.+|--     ....+.+.++
T Consensus        39 s~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i  118 (631)
T PF12234_consen   39 SIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPI  118 (631)
T ss_pred             ccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccccee
Confidence            34555555554 48999999988755  1224577899999964  4  5666667778888743     3333334555


Q ss_pred             eecc--ccC-CCeEE-EEecCCCeEEEee
Q 021744          267 ASLK--VHT-DSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       267 ~~~~--~~~-~~v~~-~~s~d~~~l~~s~  291 (308)
                      ..+.  .++ .+|.. .|-++|.++++++
T Consensus       119 ~~i~i~~~T~h~Igds~Wl~~G~LvV~sG  147 (631)
T PF12234_consen  119 RKIDISSHTPHPIGDSIWLKDGTLVVGSG  147 (631)
T ss_pred             EEEEeecCCCCCccceeEecCCeEEEEeC
Confidence            5543  343 56777 9999997777665

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.46  E-value=2  Score=39.35  Aligned_cols=75  Identities=19%  Similarity=0.228  Sum_probs=44.7

Q ss_pred             CcEEEEEcCCCcee-eeeCCCCCEEE-EEEeCCEEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE--EEecCCC
Q 021744          210 NFVKAWNTQTNTDL-SLSGPVGQVYA-MAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA--HFSRDVT  285 (308)
Q Consensus       210 ~~i~~wd~~~~~~~-~~~~~~~~v~~-~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~--~~s~d~~  285 (308)
                      +.|.-+|+.+++.. ..........+ +.....+++.++.+|.++.+|.+++    +++.+.+........  .|.-+|+
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TG----e~lw~~~~g~~~~a~P~ty~~~G~  516 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTG----EELWKFKTGSGIVGPPVTYEQDGK  516 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCC----CEeEEEeCCCCceecCEEEEeCCE
Confidence            45778888888877 33322111122 2333347777888999999999999    555555543333322  4455665


Q ss_pred             eEE
Q 021744          286 SLL  288 (308)
Q Consensus       286 ~l~  288 (308)
                      ..+
T Consensus       517 qYv  519 (527)
T TIGR03075       517 QYV  519 (527)
T ss_pred             EEE
Confidence            443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.46  E-value=1.1  Score=36.41  Aligned_cols=182  Identities=11%  Similarity=0.111  Sum_probs=97.8

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEee-CCCeEEEEEcCCCc-----ee
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGE-KCKFLHSWTVGDGF-----KL  142 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~d~~i~iwd~~~~~-----~~  142 (308)
                      .++|.|+.+.  +.....+.|.-.+.+ ++.+......-....-.+.+..++.++... .++.+.++++....     ..
T Consensus        26 GLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~  104 (248)
T PF06977_consen   26 GLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRAD  104 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEE
T ss_pred             ccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhh
Confidence            7999998765  777778888777764 544422211112235566777777775444 58899998884321     11


Q ss_pred             eeEee-----CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC---CeEEEEEe---------CCCeeEEE--EcC-CC
Q 021744          143 LTQLE-----GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS---GQCAGVIN---------LGGEVGCM--ISE-GP  202 (308)
Q Consensus       143 ~~~~~-----~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~---~~~~~~~~---------~~~~v~~~--~~~-~~  202 (308)
                      ...+.     .+...+-.++|++.++.|+.+-+..-..++.++.   ...+....         ....+..+  .+. +.
T Consensus       105 ~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~  184 (248)
T PF06977_consen  105 VQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGH  184 (248)
T ss_dssp             EEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTE
T ss_pred             ceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCe
Confidence            11221     2445689999999888887777777677776653   22222221         11122333  233 55


Q ss_pred             EEEEEc-CCcEEEEEcCCCcee---eeeCC-------CCCEEEEEEeCC-EEEEEcCCCeEEEE
Q 021744          203 WIFIGV-TNFVKAWNTQTNTDL---SLSGP-------VGQVYAMAVGND-LLFAGTQDGAILAW  254 (308)
Q Consensus       203 ~l~~~~-d~~i~~wd~~~~~~~---~~~~~-------~~~v~~~~~~~~-~l~~g~~dg~i~iw  254 (308)
                      +++.+. +..|..+| .+++.+   .+...       -.+.-.|+|.++ .|...++-+..++|
T Consensus       185 lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  185 LLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             EEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred             EEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence            666665 77888888 455544   22221       135788999998 66666777766655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.34  E-value=1.1  Score=41.51  Aligned_cols=93  Identities=10%  Similarity=0.127  Sum_probs=62.6

Q ss_pred             EEeeCCCeEEEEEcCCCceee--eEeeCcccceEEEEEe--CCCCEEEEeeCCCcEEEEeCCC---------CeEEEEEe
Q 021744          123 MYGEKCKFLHSWTVGDGFKLL--TQLEGHQKVVSGITLP--SGSDKLYSGSKDETVRVWDCAS---------GQCAGVIN  189 (308)
Q Consensus       123 ~~g~~d~~i~iwd~~~~~~~~--~~~~~h~~~v~~~~~~--~~~~~l~s~s~dg~v~~wd~~~---------~~~~~~~~  189 (308)
                      +..+....+.|||.+.+ ...  ..+ ...+.|.++.|.  |+++.+++.+....|.++.-..         -.+++.+.
T Consensus        45 ~V~~~~~~LtIWD~~~~-~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~  122 (631)
T PF12234_consen   45 VVDSSRSELTIWDTRSG-VLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID  122 (631)
T ss_pred             EEECCCCEEEEEEcCCc-EEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE
Confidence            45555678999999887 322  222 357899999985  6889999999999999985421         23344443


Q ss_pred             ----CCCeeEE-EEcCCCEEEEEcCCcEEEEEc
Q 021744          190 ----LGGEVGC-MISEGPWIFIGVTNFVKAWNT  217 (308)
Q Consensus       190 ----~~~~v~~-~~~~~~~l~~~~d~~i~~wd~  217 (308)
                          ...++.. .+-++..+++|..+.+.++|-
T Consensus       123 i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk  155 (631)
T PF12234_consen  123 ISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK  155 (631)
T ss_pred             eecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence                2234443 355666777777788888764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.19  E-value=0.77  Score=40.75  Aligned_cols=134  Identities=10%  Similarity=0.093  Sum_probs=85.6

Q ss_pred             CCCCEE-EEeeCCCcEEEEeCCCCeEEEEEeCCCeeE-EEEc--------CCCEEEEEcCCcEEEEEcCCCc-eeeeeC-
Q 021744          160 SGSDKL-YSGSKDETVRVWDCASGQCAGVINLGGEVG-CMIS--------EGPWIFIGVTNFVKAWNTQTNT-DLSLSG-  227 (308)
Q Consensus       160 ~~~~~l-~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~-~~~~--------~~~~l~~~~d~~i~~wd~~~~~-~~~~~~-  227 (308)
                      .+.+++ ..+..-..++-.|++.|+.+..+.....+. ..-|        +.+.|+.-++..|.-.|.+-.. .+.... 
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es  556 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES  556 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence            344544 456666788888999999999998554442 2222        3444554456666666765332 221111 


Q ss_pred             ----CCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEEE
Q 021744          228 ----PVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMFI  297 (308)
Q Consensus       228 ----~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~  297 (308)
                          ......|..-..+ ++|+++..|-|++||--..    +....+.+-...|-. ..+.+|+++++.|-..|.+
T Consensus       557 KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~----rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL  628 (776)
T COG5167         557 KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGK----RAKTALPGLGDAIKHIDVTANGKHILATCKNYLLL  628 (776)
T ss_pred             hhccccccccccccccCceEEEecCCCceeeehhhcc----hhhhcCcccccceeeeEeecCCcEEEEeecceEEE
Confidence                1223344444445 9999999999999996553    334456667777877 8899999999988444443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.88  E-value=2.5  Score=37.13  Aligned_cols=213  Identities=10%  Similarity=0.078  Sum_probs=94.7

Q ss_pred             CCCe--eeccCCCcEEEEECCCCC--Cc--cccc--ceee----eeeeeeeeecCCce-EE--ee----CCCeEEEEEcC
Q 021744           77 NTWG--RNNNFNNHSNNYRAGNSK--NS--NINN--RAVI----KTDILCRNWVQGNC-MY--GE----KCKFLHSWTVG  137 (308)
Q Consensus        77 ~g~~--~s~~~d~~i~vwd~~~~~--~~--~~~~--~~~~----~~~~~~~~~~~~~~-~~--g~----~d~~i~iwd~~  137 (308)
                      +.++  +-|-.+..|.|.|+.+..  +.  +...  ..+.    ......-..|+|.+ ++  |.    .-|-+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            3445  555577889999996321  11  1100  0111    11333444566744 33  22    23567788877


Q ss_pred             CCceeeeEeeCc---ccceEEEEEeCCCCEEEEee--------------------CCCcEEEEeCCCCeEEEEEeCCCe-
Q 021744          138 DGFKLLTQLEGH---QKVVSGITLPSGSDKLYSGS--------------------KDETVRVWDCASGQCAGVINLGGE-  193 (308)
Q Consensus       138 ~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~s--------------------~dg~v~~wd~~~~~~~~~~~~~~~-  193 (308)
                      +. +.+...+..   ...-..+-|.|..+.++|..                    ...++.+||+.+.+.++++..... 
T Consensus       166 tf-~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g  244 (461)
T PF05694_consen  166 TF-EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG  244 (461)
T ss_dssp             T---EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred             cc-cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence            66 555555432   22335667788777787775                    246899999999999999985432 


Q ss_pred             -----eEEEE-cCCCEEEEEc--CCcEEEE-EcCCCce-----eeeeCC-----------------CCCEEEEEEeCC--
Q 021744          194 -----VGCMI-SEGPWIFIGV--TNFVKAW-NTQTNTD-----LSLSGP-----------------VGQVYAMAVGND--  240 (308)
Q Consensus       194 -----v~~~~-~~~~~l~~~~--d~~i~~w-d~~~~~~-----~~~~~~-----------------~~~v~~~~~~~~--  240 (308)
                           ++.+. |+..+=+++.  ..+|..| ....++-     +.+...                 ..-|+.|.+|.|  
T Consensus       245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr  324 (461)
T PF05694_consen  245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR  324 (461)
T ss_dssp             EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred             CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence                 22222 3444444433  5555544 3233321     111110                 245789999988  


Q ss_pred             -EEEEEcCCCeEEEEEcCCCCcccccceecc-c---------------cCCCeEE-EEecCCCeEEEee
Q 021744          241 -LLFAGTQDGAILAWKFNVTTNCFEPAASLK-V---------------HTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       241 -~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-~---------------~~~~v~~-~~s~d~~~l~~s~  291 (308)
                       +.+++-.+|.|+.||+..... .+++.++. +               -.+.... ..|.||+.|..+.
T Consensus       325 fLYvs~W~~GdvrqYDISDP~~-Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  325 FLYVSNWLHGDVRQYDISDPFN-PKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             EEEEEETTTTEEEEEE-SSTTS--EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             EEEEEcccCCcEEEEecCCCCC-CcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence             556666799999999987632 12222211 0               0112345 7899999988554

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.83  E-value=2.4  Score=36.69  Aligned_cols=174  Identities=12%  Similarity=0.035  Sum_probs=88.0

Q ss_pred             eeeeeecCCce-EEee-CC--CeEEEEEcCCCceeeeEeeCcc-cceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEE
Q 021744          112 ILCRNWVQGNC-MYGE-KC--KFLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG  186 (308)
Q Consensus       112 ~~~~~~~~~~~-~~g~-~d--~~i~iwd~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~  186 (308)
                      ..-+|..+|+. +.++ .|  ..+++.|+.++ +. ..|..+. .......++|+++.++-.-....|+--|+++.+...
T Consensus        39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~-~i-~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~  116 (386)
T PF14583_consen   39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATG-EI-TQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV  116 (386)
T ss_dssp             TS--B-TTS-EEEEEE-TTSS-EEEEEETTT--EE-EE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE
T ss_pred             cCCCcCCCCCEEEEEeccCCCcceEEEEcccC-EE-EECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE
Confidence            33456777744 4444 34  46777788887 34 4444333 333356777888888766666789999999987666


Q ss_pred             EEeCCCeeE----E-EEcCCCEEEEEc-----------------------CCcEEEEEcCCCceeeeeCCCCCEEEEEEe
Q 021744          187 VINLGGEVG----C-MISEGPWIFIGV-----------------------TNFVKAWNTQTNTDLSLSGPVGQVYAMAVG  238 (308)
Q Consensus       187 ~~~~~~~v~----~-~~~~~~~l~~~~-----------------------d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~  238 (308)
                      .+..+....    - +..++..++...                       ...|...|+++++...+......+.-+.|+
T Consensus       117 vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fs  196 (386)
T PF14583_consen  117 VYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFS  196 (386)
T ss_dssp             EEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEE
T ss_pred             EEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccC
Confidence            555333222    1 124555554210                       124556688888887666667788899999


Q ss_pred             CC---EEEEEcC---CCe-EEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE
Q 021744          239 ND---LLFAGTQ---DGA-ILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL  288 (308)
Q Consensus       239 ~~---~l~~g~~---dg~-i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~  288 (308)
                      |.   +|+.|.+   +.. -+||-+++.....+++..-. ....+.. -|.|||..+.
T Consensus       197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~  253 (386)
T PF14583_consen  197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIW  253 (386)
T ss_dssp             TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EE
T ss_pred             CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEE
Confidence            98   5555443   322 36777665432223333222 1234444 8899997665

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.64  E-value=4.5  Score=39.02  Aligned_cols=169  Identities=15%  Similarity=0.173  Sum_probs=99.1

Q ss_pred             eEEEEEcCCCceeeeEee--Cc--ccceEEEEEeCC-CCEEEEee----------CCCcEEEEeCCCCeEEE---EEeCC
Q 021744          130 FLHSWTVGDGFKLLTQLE--GH--QKVVSGITLPSG-SDKLYSGS----------KDETVRVWDCASGQCAG---VINLG  191 (308)
Q Consensus       130 ~i~iwd~~~~~~~~~~~~--~h--~~~v~~~~~~~~-~~~l~s~s----------~dg~v~~wd~~~~~~~~---~~~~~  191 (308)
                      .++++|-++- +.+...+  ..  .-.|.++.|..| +.+++.|.          ..|.|.++.+...+.++   +.+..
T Consensus       751 ~l~vlD~nTf-~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~  829 (1096)
T KOG1897|consen  751 FLRVLDQNTF-EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVK  829 (1096)
T ss_pred             EEEEecCCce-eEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeec
Confidence            4667776655 3332221  11  123455557766 56666654          24566677666532222   22234


Q ss_pred             CeeEEEE-cCCCEEEEEcCCcEEEEEcCCCcee-eeeCCCCCEEEEEEe--CCEEEEEcCCCeEEEEEcCCCCcccccce
Q 021744          192 GEVGCMI-SEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVG--NDLLFAGTQDGAILAWKFNVTTNCFEPAA  267 (308)
Q Consensus       192 ~~v~~~~-~~~~~l~~~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~  267 (308)
                      +.+.++. .+|+ +++|-+..|++|+..+.+.+ .-..+..++..+...  .|.++.|..-+.+.+...+..+..+..+.
T Consensus       830 Gav~aL~~fngk-llA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evA  908 (1096)
T KOG1897|consen  830 GAVYALVEFNGK-LLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVA  908 (1096)
T ss_pred             cceeehhhhCCe-EEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEee
Confidence            4444443 3454 45566789999999988555 444566666666655  44899999989988887776543222221


Q ss_pred             eccccCCCeEE-EEecCCCeEEEeeceEEEEeecC
Q 021744          268 SLKVHTDSNRA-HFSRDVTSLLGSVSFIMFIGQNN  301 (308)
Q Consensus       268 ~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~~~~~  301 (308)
                       -.-+..+.+. .+-.+..++.+-.+..+|+...+
T Consensus       909 -rD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  909 -RDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKD  942 (1096)
T ss_pred             -hhhCccceeeEEEecCceEEeecccccEEEEEec
Confidence             1235667777 77666677776667777776644

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.61  E-value=2.1  Score=35.01  Aligned_cols=179  Identities=13%  Similarity=0.062  Sum_probs=97.1

Q ss_pred             eeeeeeecCCce-EEeeCC--CeEEEEEcCCCceeeeEeeCc-ccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEE
Q 021744          111 DILCRNWVQGNC-MYGEKC--KFLHSWTVGDGFKLLTQLEGH-QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG  186 (308)
Q Consensus       111 ~~~~~~~~~~~~-~~g~~d--~~i~iwd~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~  186 (308)
                      ..-+.|..++.. -+.+.-  ..|+.+|+.++ +......-. .--=-.++...+ +...-.=.++...+||.++.+.+.
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg-~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETG-KVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTS-SEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCC-cEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEE
Confidence            334555566655 444443  47899999998 444433311 112234444433 333344467899999999999999


Q ss_pred             EEeCCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eee--CC---CCCEEEEEEeCC-EEEEEcCCCeEEEEEcCC
Q 021744          187 VINLGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLS--GP---VGQVYAMAVGND-LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       187 ~~~~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~--~~---~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~  258 (308)
                      ++..+.+-..++.+++.|+.+. +..++++|..+.+.. .+.  ..   -..++.+.+-.. +.|=.=....|...|..+
T Consensus       125 ~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~t  204 (264)
T PF05096_consen  125 TFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPET  204 (264)
T ss_dssp             EEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT
T ss_pred             EEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCC
Confidence            9998777788888888877665 889999999887654 221  11   123445555443 333333334445555555


Q ss_pred             CCccc-----ccceec------cccCCCeEE-EEecCCCeEEEee
Q 021744          259 TTNCF-----EPAASL------KVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       259 ~~~~~-----~~~~~~------~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      +....     .+....      .......+. +|.|....+.+++
T Consensus       205 G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  205 GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             -BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            42100     000100      111345677 9999887777665

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.43  E-value=5.1  Score=38.70  Aligned_cols=173  Identities=11%  Similarity=0.126  Sum_probs=91.7

Q ss_pred             CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe--CCCeeEEE--Ec--CC
Q 021744          128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN--LGGEVGCM--IS--EG  201 (308)
Q Consensus       128 d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~--~~~~v~~~--~~--~~  201 (308)
                      ...||+++-..   ....+. .+..++....+.+...++.++.++.+...++..+......+  .+..+.|+  .|  ++
T Consensus       469 s~~iRl~ss~~---~~~~W~-~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~  544 (1096)
T KOG1897|consen  469 SNSIRLVSSAG---LRSEWR-PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDA  544 (1096)
T ss_pred             cccEEEEcchh---hhhccc-CCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCC
Confidence            34566666441   122333 23444555555556677777777878877877665333333  56778887  22  22


Q ss_pred             ----CEEEEEc-CC-cEEEEEcCCCceeee--eCCC---CCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCccccccee
Q 021744          202 ----PWIFIGV-TN-FVKAWNTQTNTDLSL--SGPV---GQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAAS  268 (308)
Q Consensus       202 ----~~l~~~~-d~-~i~~wd~~~~~~~~~--~~~~---~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~  268 (308)
                          +++++|. +. .+.+.-+.....+..  ..-+   ..|.-..+-.|  +|.++..||.+.-|-+..........+.
T Consensus       545 ~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk  624 (1096)
T KOG1897|consen  545 PNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKK  624 (1096)
T ss_pred             CCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccc
Confidence                2677776 44 334444444433311  1112   23333444454  9999999999987766654332222333


Q ss_pred             ccccCCCeEE-EEecCCC-eEEEeeceEEEEeecCcee
Q 021744          269 LKVHTDSNRA-HFSRDVT-SLLGSVSFIMFIGQNNKGV  304 (308)
Q Consensus       269 ~~~~~~~v~~-~~s~d~~-~l~~s~s~~i~~~~~~~~~  304 (308)
                      ..-...++.. .|+..++ .+++.++.--.+...++.+
T Consensus       625 ~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kL  662 (1096)
T KOG1897|consen  625 VTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKL  662 (1096)
T ss_pred             cccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcE
Confidence            3334567777 8876554 4444443333333334433

>PHA02790 Kelch-like protein; Provisional

Probab=94.37  E-value=3.9  Score=37.09  Aligned_cols=143  Identities=9%  Similarity=0.004  Sum_probs=68.1

Q ss_pred             ecCCCe-eeccCC--CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCC---CeEEEEEcCCCc-eeeeEe
Q 021744           75 ANNTWG-RNNNFN--NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKC---KFLHSWTVGDGF-KLLTQL  146 (308)
Q Consensus        75 s~~g~~-~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d---~~i~iwd~~~~~-~~~~~~  146 (308)
                      .-++.. +.|+.+  .++..||..+.+............ .......++.. +.|+.+   ..+..||+.+.. .....+
T Consensus       316 ~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~-~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m  394 (480)
T PHA02790        316 PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRC-NPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST  394 (480)
T ss_pred             EECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCc-ccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence            456667 888864  457778875443221111111111 11222234444 666654   346778887652 111111


Q ss_pred             eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC---CCeeEEEEcCCCEEEEEc-C-----CcEEEEEc
Q 021744          147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL---GGEVGCMISEGPWIFIGV-T-----NFVKAWNT  217 (308)
Q Consensus       147 ~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~---~~~v~~~~~~~~~l~~~~-d-----~~i~~wd~  217 (308)
                      ...... .+++ .-++...+.|   |.+.+||.++.+-...-..   .........++++.++|+ +     ..+..||.
T Consensus       395 ~~~r~~-~~~~-~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~  469 (480)
T PHA02790        395 YYPHYK-SCAL-VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNN  469 (480)
T ss_pred             CCcccc-ceEE-EECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEEC
Confidence            111111 1222 2245555555   3577888876643322111   122233356777777665 3     35677777


Q ss_pred             CCCcee
Q 021744          218 QTNTDL  223 (308)
Q Consensus       218 ~~~~~~  223 (308)
                      .+++-.
T Consensus       470 ~~~~W~  475 (480)
T PHA02790        470 RTYSWN  475 (480)
T ss_pred             CCCeEE
Confidence            766543

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.27  E-value=3.1  Score=38.64  Aligned_cols=136  Identities=9%  Similarity=0.055  Sum_probs=70.4

Q ss_pred             cccceEEEEEeCCCCEEEEee------CCC--cEEEEeCCCCeEEEEEeCCCee--EEEEcCCCEEEEEcC---------
Q 021744          149 HQKVVSGITLPSGSDKLYSGS------KDE--TVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIGVT---------  209 (308)
Q Consensus       149 h~~~v~~~~~~~~~~~l~s~s------~dg--~v~~wd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~d---------  209 (308)
                      ....+...+++|+++.++..-      .|.  .+.+++.. ++. ..+......  ..+.++++.+....+         
T Consensus       348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEec
Confidence            334678899999998876554      244  44444542 222 223222212  233466665554322         


Q ss_pred             ----CcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEE---EEcCCCCcccccceecc-ccCCCeEE-
Q 021744          210 ----NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILA---WKFNVTTNCFEPAASLK-VHTDSNRA-  278 (308)
Q Consensus       210 ----~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~i---wd~~~~~~~~~~~~~~~-~~~~~v~~-  278 (308)
                          +.+.+.++..++...  .....|.++.||||  .++.-. ++.|++   -....+.........+. .-...+.. 
T Consensus       426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l  502 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL  502 (591)
T ss_pred             cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence                234444554443332  33557999999999  444433 477777   33333321011112222 22333455 


Q ss_pred             EEecCCCeEEE
Q 021744          279 HFSRDVTSLLG  289 (308)
Q Consensus       279 ~~s~d~~~l~~  289 (308)
                      .|.+++.+++.
T Consensus       503 ~W~~~~~L~V~  513 (591)
T PRK13616        503 DWRTGDSLVVG  513 (591)
T ss_pred             eEecCCEEEEE
Confidence            89999986654

>PHA02790 Kelch-like protein; Provisional

Probab=94.22  E-value=4.2  Score=36.89  Aligned_cols=178  Identities=11%  Similarity=-0.015  Sum_probs=85.6

Q ss_pred             cCCCe-eeccCCC-----cEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCC--CeEEEEEcCCCc-eeeeE
Q 021744           76 NNTWG-RNNNFNN-----HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKC--KFLHSWTVGDGF-KLLTQ  145 (308)
Q Consensus        76 ~~g~~-~s~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d--~~i~iwd~~~~~-~~~~~  145 (308)
                      .++.. +.|+.++     ++..||..+..............-... ...++.. +.|+.+  ..+..||..+.. ..+..
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~-v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASG-VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceE-EEECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            34445 7777653     466677765432211111111111111 2234444 777753  457788876551 11122


Q ss_pred             eeCcccceEEEEEeCCCCEEEEeeCCC---cEEEEeCCCCeEEEEEeCCC---eeEEEEcCCCEEEEEcCCcEEEEEcCC
Q 021744          146 LEGHQKVVSGITLPSGSDKLYSGSKDE---TVRVWDCASGQCAGVINLGG---EVGCMISEGPWIFIGVTNFVKAWNTQT  219 (308)
Q Consensus       146 ~~~h~~~v~~~~~~~~~~~l~s~s~dg---~v~~wd~~~~~~~~~~~~~~---~v~~~~~~~~~l~~~~d~~i~~wd~~~  219 (308)
                      +...... .+++. -++...+.|+.++   .+..||.++.+-...-....   .......++++.+.|  |.+.+||.++
T Consensus       349 l~~~r~~-~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~~  424 (480)
T PHA02790        349 LLKPRCN-PAVAS-INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCESS  424 (480)
T ss_pred             CCCCCcc-cEEEE-ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecCCC
Confidence            2211111 12222 2566667776553   47788887654332211111   112234566666666  3567899887


Q ss_pred             Cceeeee---CCCCCEEEEEEeCC-EEEEEcCC-----CeEEEEEcCCC
Q 021744          220 NTDLSLS---GPVGQVYAMAVGND-LLFAGTQD-----GAILAWKFNVT  259 (308)
Q Consensus       220 ~~~~~~~---~~~~~v~~~~~~~~-~l~~g~~d-----g~i~iwd~~~~  259 (308)
                      .+-..+.   ...... +++...+ +.+.|+.+     ..|..||..+.
T Consensus       425 ~~W~~~~~m~~~r~~~-~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        425 NTWTLIDDPIYPRDNP-ELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CcEeEcCCCCCCcccc-EEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence            7655222   222222 3444455 66666643     34677777664

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.19  E-value=4.8  Score=37.48  Aligned_cols=142  Identities=12%  Similarity=0.045  Sum_probs=77.9

Q ss_pred             eeeeeeeecCCce-EEee------CCC--eEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCC---------
Q 021744          110 TDILCRNWVQGNC-MYGE------KCK--FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---------  171 (308)
Q Consensus       110 ~~~~~~~~~~~~~-~~g~------~d~--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---------  171 (308)
                      .+.....+++|.. ++..      .|.  .|.+++....  ......+  ...+.-.|+|++..+++.+..         
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~--~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV--AVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc--ceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence            4667788898865 2211      233  4555554322  2222233  247888999998877776533         


Q ss_pred             ---CcEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEEEEcCCcEEE---EEcCCCcee-----eeeC-CCCCEEEEEE
Q 021744          172 ---ETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGVTNFVKA---WNTQTNTDL-----SLSG-PVGQVYAMAV  237 (308)
Q Consensus       172 ---g~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~d~~i~~---wd~~~~~~~-----~~~~-~~~~v~~~~~  237 (308)
                         +.+.+.++..++...  ..+..+..+  ++||+.++.-.+++|.+   -....++..     .+.. -...+.++.|
T Consensus       427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W  504 (591)
T PRK13616        427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW  504 (591)
T ss_pred             CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence               222222333333222  223445554  68999888655677776   444444411     1222 2334688999


Q ss_pred             eCC-EEEEEcCCCeEEEEEcC
Q 021744          238 GND-LLFAGTQDGAILAWKFN  257 (308)
Q Consensus       238 ~~~-~l~~g~~dg~i~iwd~~  257 (308)
                      .++ .|+.+..++...+|.+.
T Consensus       505 ~~~~~L~V~~~~~~~~v~~v~  525 (591)
T PRK13616        505 RTGDSLVVGRSDPEHPVWYVN  525 (591)
T ss_pred             ecCCEEEEEecCCCCceEEEe
Confidence            998 55566655555555544

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.15  E-value=2.8  Score=34.65  Aligned_cols=114  Identities=16%  Similarity=0.200  Sum_probs=78.6

Q ss_pred             eeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCC----eeEEEEcCCCEEEEEc-CCcEEEEEcCCC
Q 021744          146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG----EVGCMISEGPWIFIGV-TNFVKAWNTQTN  220 (308)
Q Consensus       146 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~----~v~~~~~~~~~l~~~~-d~~i~~wd~~~~  220 (308)
                      +.+-+..+.++.|+|+.+.|++......-.++=-..|+.+.++...+    +--....+++++++-. +.++.++.+...
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            44556679999999999999999998988888888899999987322    2222344555555554 777777765544


Q ss_pred             ce--------eee--eCC-CCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744          221 TD--------LSL--SGP-VGQVYAMAVGND--LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       221 ~~--------~~~--~~~-~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~  259 (308)
                      ..        +.+  ..+ +...-.++|.|.  .|+.+-+-.-+.||.+...
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~  212 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQS  212 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecC
Confidence            21        111  122 456788999998  7777777777888776643

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.99  E-value=0.23  Score=47.62  Aligned_cols=96  Identities=16%  Similarity=0.167  Sum_probs=66.9

Q ss_pred             eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEE--
Q 021744           81 RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGIT--  157 (308)
Q Consensus        81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~--  157 (308)
                      +.|+..|.+-..|....-...........+|.+++|+.+|.. ..|-.+|.|.+||+..+ +.++.+..|..+.+.+-  
T Consensus       103 vi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~-k~l~~i~e~~ap~t~vi~v  181 (1206)
T KOG2079|consen  103 VIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA-KILKVITEHGAPVTGVIFV  181 (1206)
T ss_pred             EEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-cceeeeeecCCccceEEEE
Confidence            777888888887774321101122223345999999999988 66778999999999998 77888877776665544  


Q ss_pred             -EeCCCCEEEEeeCCCcEEEEeC
Q 021744          158 -LPSGSDKLYSGSKDETVRVWDC  179 (308)
Q Consensus       158 -~~~~~~~l~s~s~dg~v~~wd~  179 (308)
                       +..++..++++...|.  +|.+
T Consensus       182 ~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  182 GRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEeCCCcEEEEccCCCc--eEEE
Confidence             4456667888877776  5543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.64  E-value=3  Score=33.31  Aligned_cols=127  Identities=18%  Similarity=0.192  Sum_probs=77.2

Q ss_pred             eeeeeeecCCceEEeeC----------CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEE-EEeeCCCcEEEEe-
Q 021744          111 DILCRNWVQGNCMYGEK----------CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKL-YSGSKDETVRVWD-  178 (308)
Q Consensus       111 ~~~~~~~~~~~~~~g~~----------d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~v~~wd-  178 (308)
                      .......|+|++..|..          .|.++.|-+.-.   +..+...-.--..++|+.+.+.+ ++-+.+-+|.-|| 
T Consensus       111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy  187 (310)
T KOG4499|consen  111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ---VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY  187 (310)
T ss_pred             cccCccCCCCceeeeeeccccccccccccEEEEeccCCC---ceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence            44455677776633321          345555554322   22333333444678898777665 5667778888887 


Q ss_pred             -CCCCeE-----EEEEeCCCee-------EEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC
Q 021744          179 -CASGQC-----AGVINLGGEV-------GCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND  240 (308)
Q Consensus       179 -~~~~~~-----~~~~~~~~~v-------~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~  240 (308)
                       ..+|..     +..++...+.       .++-.+|.+.++.. .++|...|..+++.+ +++-....++|++|-..
T Consensus       188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence             555542     2222211111       12333566666665 669999999999988 77777889999999743

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.58  E-value=0.48  Score=26.67  Aligned_cols=31  Identities=19%  Similarity=0.155  Sum_probs=24.9

Q ss_pred             cceEEEEEeCCC---CEEEEeeCCCcEEEEeCCC
Q 021744          151 KVVSGITLPSGS---DKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       151 ~~v~~~~~~~~~---~~l~s~s~dg~v~~wd~~~  181 (308)
                      +.|.++.|+|++   .+|+-.-.-+.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468899999754   4777777788999999995

It contains a characteristic DLL sequence motif.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.43  E-value=6.8  Score=36.72  Aligned_cols=192  Identities=10%  Similarity=0.009  Sum_probs=99.1

Q ss_pred             cCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeee---EeeCcccceEEEEEeC
Q 021744           84 NFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLT---QLEGHQKVVSGITLPS  160 (308)
Q Consensus        84 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~---~~~~h~~~v~~~~~~~  160 (308)
                      +.--.|+|+++ +|+.+....-.|. .+..+.|+.+...+.-.++|++++|++-... ...   -.......|..+.+..
T Consensus        61 ~a~~~I~If~~-sG~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~  137 (829)
T KOG2280|consen   61 SARPYIRIFNI-SGQLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFH  137 (829)
T ss_pred             ccceeEEEEec-cccchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecchhh-hcccccccccccCceeEEEEec
Confidence            33445888887 4555543333332 5677788888778888999999999986542 111   1122334455555555


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCeEEEEEe------CCCeeEEEEcCCC--EEEEEcCCc--EEEEEc--CCCceeeeeCC
Q 021744          161 GSDKLYSGSKDETVRVWDCASGQCAGVIN------LGGEVGCMISEGP--WIFIGVTNF--VKAWNT--QTNTDLSLSGP  228 (308)
Q Consensus       161 ~~~~l~s~s~dg~v~~wd~~~~~~~~~~~------~~~~v~~~~~~~~--~l~~~~d~~--i~~wd~--~~~~~~~~~~~  228 (308)
                      +|-.+++.  +|.+.+-+-.....+++.+      .+.....+..++.  .+...-+-.  ..++..  ...+...+...
T Consensus       138 ~GVavlt~--~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~  215 (829)
T KOG2280|consen  138 NGVAVLTV--SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWP  215 (829)
T ss_pred             CceEEEec--CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCC
Confidence            55444443  4555544322222222222      1111122222222  111111111  112222  22223333333


Q ss_pred             CCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecc--ccCCCeEEEEecCC
Q 021744          229 VGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK--VHTDSNRAHFSRDV  284 (308)
Q Consensus       229 ~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~s~d~  284 (308)
                      ...+..+.+||+  +|+--...|.|.+-+....    +.+.++.  .|..+-..+|.-+.
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~----~~lce~~~~~~~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLS----QILCEFNCTDHDPPKQMAWCGND  271 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecchh----hhhhccCCCCCCchHhceeecCC
Confidence            456788999988  8888889999999888765    4444444  33333322555443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.42  E-value=2.6  Score=33.68  Aligned_cols=99  Identities=10%  Similarity=0.009  Sum_probs=63.0

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEE--CCCCCCccccc-c------eeeee-eeeeeeecCCce-EEeeCCCeEEEEEcC
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYR--AGNSKNSNINN-R------AVIKT-DILCRNWVQGNC-MYGEKCKFLHSWTVG  137 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd--~~~~~~~~~~~-~------~~~~~-~~~~~~~~~~~~-~~g~~d~~i~iwd~~  137 (308)
                      .++|..+.+.  ++-+.+.+|.-||  ..+++...... .      ..... .--++.-..|.+ ++.-..++|...|+.
T Consensus       162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~  241 (310)
T KOG4499|consen  162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT  241 (310)
T ss_pred             cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence            5788877776  8888899998888  45554332111 0      01110 111222334444 566677889999999


Q ss_pred             CCceeeeEeeCcccceEEEEEeCC-CCE-EEEeeC
Q 021744          138 DGFKLLTQLEGHQKVVSGITLPSG-SDK-LYSGSK  170 (308)
Q Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~~~-~~~-l~s~s~  170 (308)
                      ++ +.+.+++-.+..|++++|--. -.. .+|+..
T Consensus       242 tG-K~L~eiklPt~qitsccFgGkn~d~~yvT~aa  275 (310)
T KOG4499|consen  242 TG-KILLEIKLPTPQITSCCFGGKNLDILYVTTAA  275 (310)
T ss_pred             CC-cEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence            99 788888888999999999643 233 344444

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.35  E-value=2.2  Score=33.47  Aligned_cols=153  Identities=12%  Similarity=0.002  Sum_probs=81.8

Q ss_pred             cEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEE
Q 021744           88 HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKL  165 (308)
Q Consensus        88 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  165 (308)
                      .|++||+++++.+...... ...+..-..-.-+..  .-.=.+|.-.++|.++- +.+..+. .++.=+.++  .|+..|
T Consensus        69 ~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~-~~lg~~~-y~GeGWgLt--~d~~~L  143 (262)
T COG3823          69 KIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTL-EELGRFS-YEGEGWGLT--SDDKNL  143 (262)
T ss_pred             eeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHh-hhhcccc-cCCcceeee--cCCcce
Confidence            5999999888654322221 011111111111111  33446788888998876 4554443 233334444  456567


Q ss_pred             EEeeCCCcEEEEeCCCCeEEEEEe---CCCeeEEE----EcCCCEEE-EEcCCcEEEEEcCCCcee-------------e
Q 021744          166 YSGSKDETVRVWDCASGQCAGVIN---LGGEVGCM----ISEGPWIF-IGVTNFVKAWNTQTNTDL-------------S  224 (308)
Q Consensus       166 ~s~s~dg~v~~wd~~~~~~~~~~~---~~~~v~~~----~~~~~~l~-~~~d~~i~~wd~~~~~~~-------------~  224 (308)
                      +.+....++..-|.++.....++.   ...++..+    +.+|...+ +-.+..|...|..+++..             .
T Consensus       144 imsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~  223 (262)
T COG3823         144 IMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNL  223 (262)
T ss_pred             EeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCc
Confidence            777666788888888765555444   33333332    45555555 223444444555555433             1


Q ss_pred             eeCCCCCEEEEEEeCC---EEEEE
Q 021744          225 LSGPVGQVYAMAVGND---LLFAG  245 (308)
Q Consensus       225 ~~~~~~~v~~~~~~~~---~l~~g  245 (308)
                      -..+.+..+.+++.|+   ++++|
T Consensus       224 ~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         224 DKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cccccccccceeecCcCCeEEEec
Confidence            1234456788898887   56665

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.10  E-value=7  Score=35.90  Aligned_cols=193  Identities=11%  Similarity=0.030  Sum_probs=102.3

Q ss_pred             CCceEEecCCCeEEEeecCCCCC-CCCCcccccCCCC-CCcccc--ccceeEEecCCCeeeccCCCcEEEEECCCCCCcc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNR-FPCPYLHRELPLP-PAATAN--GAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~~~~~-~~~~gh--~~~~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      +..+..++.++.|+-.|+.++.. +.....   .+.. .+....  ....+++. ++..+.++.|+.|.-.|.++++.+-
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~---~~~~~~~~~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~TGk~~W  144 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPK---LPDDVIPVMCCDVVNRGVALY-DGKVFFGTLDARLVALDAKTGKVVW  144 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCC---CCcccccccccccccccceEE-CCEEEEEcCCCEEEEEECCCCCEEe
Confidence            45666677788888889888731 111100   0000 000000  00012222 2223677788889888988887653


Q ss_pred             cccce-eee--eeeeeeeecCCceEEee------CCCeEEEEEcCCCceeeeEeeCcc----------------------
Q 021744          102 INNRA-VIK--TDILCRNWVQGNCMYGE------KCKFLHSWTVGDGFKLLTQLEGHQ----------------------  150 (308)
Q Consensus       102 ~~~~~-~~~--~~~~~~~~~~~~~~~g~------~d~~i~iwd~~~~~~~~~~~~~h~----------------------  150 (308)
                      ..... +..  .+...-...++..+.+.      .+|.|.-+|.+++ +.+..+..-.                      
T Consensus       145 ~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG-~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw  223 (527)
T TIGR03075       145 SKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTG-KLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW  223 (527)
T ss_pred             ecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCC-ceeEeccCcCCCcccccccccccccccccCCC
Confidence            32211 110  01111111134444433      2688999999988 4544432110                      


Q ss_pred             ---------cceE-EEEEeCCCCEEEEeeC-----CC-----------cEEEEeCCCCeEEEEEeC-CCe----------
Q 021744          151 ---------KVVS-GITLPSGSDKLYSGSK-----DE-----------TVRVWDCASGQCAGVINL-GGE----------  193 (308)
Q Consensus       151 ---------~~v~-~~~~~~~~~~l~s~s~-----dg-----------~v~~wd~~~~~~~~~~~~-~~~----------  193 (308)
                               ..++ .++++++..+++.+..     ++           +|.--|+++|+.+..++. +..          
T Consensus       224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p  303 (527)
T TIGR03075       224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM  303 (527)
T ss_pred             CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence                     1121 3466776666655542     12           677779999999998882 111          


Q ss_pred             e-EEEEcCCC---EEEEEc-CCcEEEEEcCCCcee
Q 021744          194 V-GCMISEGP---WIFIGV-TNFVKAWNTQTNTDL  223 (308)
Q Consensus       194 v-~~~~~~~~---~l~~~~-d~~i~~wd~~~~~~~  223 (308)
                      + ..+-.+++   .++.+. +|.+.+.|.++++.+
T Consensus       304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            1 11114565   555555 999999999999874

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.60  E-value=6.9  Score=34.50  Aligned_cols=101  Identities=11%  Similarity=0.079  Sum_probs=49.7

Q ss_pred             eeccCCCcEEEEECCCCCCcccccceeee-eeeeeeeecCC--ce-EE-eeCCCeEEEEEc-CCCc---eeeeEeeC---
Q 021744           81 RNNNFNNHSNNYRAGNSKNSNINNRAVIK-TDILCRNWVQG--NC-MY-GEKCKFLHSWTV-GDGF---KLLTQLEG---  148 (308)
Q Consensus        81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~-~~-g~~d~~i~iwd~-~~~~---~~~~~~~~---  148 (308)
                      ..+.+..++.+||+.+.+.+.....+... .+..++|..+-  .. .+ +.-...|..|-- ..+.   +.+.++..   
T Consensus       216 ~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v  295 (461)
T PF05694_consen  216 EAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKV  295 (461)
T ss_dssp             HHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE-
T ss_pred             hcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCccc
Confidence            33457789999999888766544443333 25667776554  22 22 223444544433 3331   11222211   


Q ss_pred             --------------cccceEEEEEeCCCCEE-EEeeCCCcEEEEeCCC
Q 021744          149 --------------HQKVVSGITLPSGSDKL-YSGSKDETVRVWDCAS  181 (308)
Q Consensus       149 --------------h~~~v~~~~~~~~~~~l-~s~s~dg~v~~wd~~~  181 (308)
                                    -..-|+.+.++.|.++| +++-.+|.|+.||+..
T Consensus       296 ~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  296 EGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             -SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred             CcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence                          13457899999999988 5666799999999986

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.38  E-value=4.8  Score=33.22  Aligned_cols=66  Identities=12%  Similarity=0.261  Sum_probs=41.0

Q ss_pred             cceEEEEEeCCCCEEE-EeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEE
Q 021744          151 KVVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWN  216 (308)
Q Consensus       151 ~~v~~~~~~~~~~~l~-s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd  216 (308)
                      .-|-+++.+.+..+++ |.-..+...+||..++..+..-............+-+.+++.+|.+.++.
T Consensus       280 nYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         280 NYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAGVAAAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             hhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccccccceeccCceEEecCCceEEecc
Confidence            3466778876555554 44444566789999998776555333322333455666666678777763

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=91.91  E-value=13  Score=36.50  Aligned_cols=129  Identities=14%  Similarity=0.203  Sum_probs=80.6

Q ss_pred             eEEEEEcCCCceeeeEeeCcc----cceEEEEEeCCCC--EEEEee-----------CCCcEEEEeCC-CCeEEEE---E
Q 021744          130 FLHSWTVGDGFKLLTQLEGHQ----KVVSGITLPSGSD--KLYSGS-----------KDETVRVWDCA-SGQCAGV---I  188 (308)
Q Consensus       130 ~i~iwd~~~~~~~~~~~~~h~----~~v~~~~~~~~~~--~l~s~s-----------~dg~v~~wd~~-~~~~~~~---~  188 (308)
                      .|++.|..++ +.+..+....    -.+..+.|+....  +++.|.           .+|.++.|++- .++.+..   .
T Consensus       854 ~I~~~d~~s~-~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T  932 (1205)
T KOG1898|consen  854 SIRVFDPKSG-KIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKT  932 (1205)
T ss_pred             eEEEEcCCCC-ceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeecc
Confidence            4888888877 4444433211    2355566654332  233332           23446666543 3442222   2


Q ss_pred             eCCCeeEEEEcCCCEEEEEcCCcEEEEEcCCCcee---eeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcCCC
Q 021744          189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       189 ~~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~---~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~  259 (308)
                      ..+.++.++++-..++++|-...+++||+...++.   .++.....|..+.+....++.|...-.|.++..+..
T Consensus       933 ~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~ 1006 (1205)
T KOG1898|consen  933 EIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRRE 1006 (1205)
T ss_pred             CCCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecC
Confidence            25567778888877888999999999999888766   333346678888887777777777667777666554

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.85  E-value=8.6  Score=33.98  Aligned_cols=177  Identities=18%  Similarity=0.141  Sum_probs=98.2

Q ss_pred             eeeeeeecCCce-EE-----eeCCCeEEEEEcCCCceeee-EeeCcccceEEEEEeCCCCEEEEeeCCC-----------
Q 021744          111 DILCRNWVQGNC-MY-----GEKCKFLHSWTVGDGFKLLT-QLEGHQKVVSGITLPSGSDKLYSGSKDE-----------  172 (308)
Q Consensus       111 ~~~~~~~~~~~~-~~-----g~~d~~i~iwd~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~dg-----------  172 (308)
                      +....++|++.. +.     |++.-.++++|+.++ +.+. .+.. . ....+.|.++++.|+....+.           
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i~~-~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGIEN-P-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEEEE-E-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCcccc-c-ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            345677888865 22     344467999999999 4543 3332 1 122399999988776554333           


Q ss_pred             cEEEEeCCCCeEE--EEEe--CCC--eeE-EEEcCCCEEEEE--c--C-CcEEEEEcCCC-----ceeeeeC-CCCCEEE
Q 021744          173 TVRVWDCASGQCA--GVIN--LGG--EVG-CMISEGPWIFIG--V--T-NFVKAWNTQTN-----TDLSLSG-PVGQVYA  234 (308)
Q Consensus       173 ~v~~wd~~~~~~~--~~~~--~~~--~v~-~~~~~~~~l~~~--~--d-~~i~~wd~~~~-----~~~~~~~-~~~~v~~  234 (308)
                      .|+.|.+.+....  ..+.  .+.  .+. ..+.++++++..  .  + ..+.+.|+...     +...+.. ..+....
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~  282 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY  282 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence            3788888876432  3444  222  122 235788988753  2  3 46888898875     3333333 3344455


Q ss_pred             EEEeCC--EEEEE--cCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          235 MAVGND--LLFAG--TQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       235 ~~~~~~--~l~~g--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      +....+  ++.+-  ...+.|...++...... .....+..+...+.. .+...+.+|+...
T Consensus       283 v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~-~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~  343 (414)
T PF02897_consen  283 VDHHGDRLYILTNDDAPNGRLVAVDLADPSPA-EWWTVLIPEDEDVSLEDVSLFKDYLVLSY  343 (414)
T ss_dssp             EEEETTEEEEEE-TT-TT-EEEEEETTSTSGG-GEEEEEE--SSSEEEEEEEEETTEEEEEE
T ss_pred             EEccCCEEEEeeCCCCCCcEEEEecccccccc-cceeEEcCCCCceeEEEEEEECCEEEEEE
Confidence            666666  33332  22456777777775320 112245566665555 7777777777554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.68  E-value=0.8  Score=25.77  Aligned_cols=29  Identities=17%  Similarity=0.180  Sum_probs=24.4

Q ss_pred             CCEEEEEEeCC-----EEEEEcCCCeEEEEEcCC
Q 021744          230 GQVYAMAVGND-----LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       230 ~~v~~~~~~~~-----~l~~g~~dg~i~iwd~~~  258 (308)
                      +.+.++.|+|+     +|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            36889999974     777777889999999995

It contains a characteristic DLL sequence motif.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=91.50  E-value=4.5  Score=38.81  Aligned_cols=100  Identities=20%  Similarity=0.203  Sum_probs=63.6

Q ss_pred             CCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeE-------E--E--E----------------cCCCEEEEE-cCCcEE
Q 021744          162 SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG-------C--M--I----------------SEGPWIFIG-VTNFVK  213 (308)
Q Consensus       162 ~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~-------~--~--~----------------~~~~~l~~~-~d~~i~  213 (308)
                      +..++.++.++.|.-.|.++|+.+..+..+....       |  +  .                ..+..++.+ .|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            4578888889999999999999998887332211       1  1  1                123355555 499999


Q ss_pred             EEEcCCCceeeeeCCCCCE-----------------EEEEEeCCEEEEEcC----------CCeEEEEEcCCCCc
Q 021744          214 AWNTQTNTDLSLSGPVGQV-----------------YAMAVGNDLLFAGTQ----------DGAILAWKFNVTTN  261 (308)
Q Consensus       214 ~wd~~~~~~~~~~~~~~~v-----------------~~~~~~~~~l~~g~~----------dg~i~iwd~~~~~~  261 (308)
                      -.|.++++...-.+..+.+                 ..-.+..+.++.|+.          +|.|+-+|.++++.
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl  348 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL  348 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence            9999999877321222111                 111222345555642          68899999999854

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.40  E-value=2.1  Score=34.17  Aligned_cols=68  Identities=12%  Similarity=0.365  Sum_probs=33.1

Q ss_pred             CCeeEEEEcCCCEEE-EEcCCcEEEEEcCCCcee--e------ee-------CCCCCEEEEEEeCC--EEEEEcCCCeEE
Q 021744          191 GGEVGCMISEGPWIF-IGVTNFVKAWNTQTNTDL--S------LS-------GPVGQVYAMAVGND--LLFAGTQDGAIL  252 (308)
Q Consensus       191 ~~~v~~~~~~~~~l~-~~~d~~i~~wd~~~~~~~--~------~~-------~~~~~v~~~~~~~~--~l~~g~~dg~i~  252 (308)
                      +.++..+...+.+++ ...+|.+++||+.+++..  .      +.       .....|..+.++.+  -+++ -.+|..+
T Consensus        12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-lsng~~y   90 (219)
T PF07569_consen   12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-LSNGDSY   90 (219)
T ss_pred             CCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-EeCCCEE
Confidence            333344444444443 334666666666555432  0      11       23445666666655  2232 2346667


Q ss_pred             EEEcCCC
Q 021744          253 AWKFNVT  259 (308)
Q Consensus       253 iwd~~~~  259 (308)
                      .|+..-+
T Consensus        91 ~y~~~L~   97 (219)
T PF07569_consen   91 SYSPDLG   97 (219)
T ss_pred             Eeccccc
Confidence            7765543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.38  E-value=0.26  Score=46.46  Aligned_cols=142  Identities=17%  Similarity=0.238  Sum_probs=81.1

Q ss_pred             eeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEE-----------EeCCCCEEEEeeCCCcEEEEeCC-
Q 021744          114 CRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGIT-----------LPSGSDKLYSGSKDETVRVWDCA-  180 (308)
Q Consensus       114 ~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~-----------~~~~~~~l~s~s~dg~v~~wd~~-  180 (308)
                      |-|-+.... -.+..++.|++....+..  ...+.+|...+..++           ++|||..++.+..||.+++|.+. 
T Consensus       189 cp~~~~~~~ic~~~~~~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi  266 (1283)
T KOG1916|consen  189 CPIAVNKVYICYGLKGGEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI  266 (1283)
T ss_pred             cccccccceeeeccCCCceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence            334444433 457788899987776542  234556776665554           58899999999999999888654 


Q ss_pred             CC----eEEEEEe-CC-CeeEEE-EcC--------CC--EEEEEc--CCcEEEEEcCCCcee-e--------eeCCCCCE
Q 021744          181 SG----QCAGVIN-LG-GEVGCM-ISE--------GP--WIFIGV--TNFVKAWNTQTNTDL-S--------LSGPVGQV  232 (308)
Q Consensus       181 ~~----~~~~~~~-~~-~~v~~~-~~~--------~~--~l~~~~--d~~i~~wd~~~~~~~-~--------~~~~~~~v  232 (308)
                      ++    .++..++ |. .+..|. +.+        +.  +++.+.  +..+++|.....++. .        ...|...|
T Consensus       267 ~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p~~~~v  346 (1283)
T KOG1916|consen  267 TGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGPHDGEV  346 (1283)
T ss_pred             eccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeecCCCccc
Confidence            22    3444444 33 333343 322        22  334444  558999987766554 1        11233333


Q ss_pred             EEEEEeCC---EEEEEcCCCeEEEEEcC
Q 021744          233 YAMAVGND---LLFAGTQDGAILAWKFN  257 (308)
Q Consensus       233 ~~~~~~~~---~l~~g~~dg~i~iwd~~  257 (308)
                      +.+....-   .++..+-++.|.+|.-+
T Consensus       347 ~~~~~~~~~~~~~v~r~v~~~i~~~qn~  374 (1283)
T KOG1916|consen  347 TDLSMCQWMTTRLVSRSVDGTIKIWQNR  374 (1283)
T ss_pred             cchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence            33222211   45556677888888644

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.36  E-value=11  Score=34.07  Aligned_cols=26  Identities=8%  Similarity=-0.097  Sum_probs=19.3

Q ss_pred             ceEEEEEeCCCCEEEEeeCCCcEEEE
Q 021744          152 VVSGITLPSGSDKLYSGSKDETVRVW  177 (308)
Q Consensus       152 ~v~~~~~~~~~~~l~s~s~dg~v~~w  177 (308)
                      .|..+..++.|..++-.+.+|.+.++
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMe  130 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVME  130 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEE
Confidence            45667778888888888888865544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=91.32  E-value=6.3  Score=35.93  Aligned_cols=142  Identities=12%  Similarity=0.129  Sum_probs=77.5

Q ss_pred             cceEEEEEeCCCCEE-EEee--CCCcEEEEeCCCCeEEEEEeCCCeeEEE-E-c----C-CCEEEEEcCCcEEEEEcCCC
Q 021744          151 KVVSGITLPSGSDKL-YSGS--KDETVRVWDCASGQCAGVINLGGEVGCM-I-S----E-GPWIFIGVTNFVKAWNTQTN  220 (308)
Q Consensus       151 ~~v~~~~~~~~~~~l-~s~s--~dg~v~~wd~~~~~~~~~~~~~~~v~~~-~-~----~-~~~l~~~~d~~i~~wd~~~~  220 (308)
                      .++..++|. ||+.+ ++.-  .+|.+++=|   ...+..|.   .+..+ | |    + ..+||+-..+.|.+|.+...
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqFE---hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQFE---HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS   92 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeeccc---eeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence            467888887 56554 3332  234443333   22333333   23322 2 1    2 35777788899999987522


Q ss_pred             -----cee-eeeCC---CCC--EEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCe
Q 021744          221 -----TDL-SLSGP---VGQ--VYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTS  286 (308)
Q Consensus       221 -----~~~-~~~~~---~~~--v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~  286 (308)
                           +.. ....+   .-+  ...+.|+|.  .|+.-+....=.+++++....  +....+ ...+.|.| +|.+||+.
T Consensus        93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s--rVkaDi-~~~G~IhCACWT~DG~R  169 (671)
T PF15390_consen   93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS--RVKADI-KTSGLIHCACWTKDGQR  169 (671)
T ss_pred             ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc--eEEEec-cCCceEEEEEecCcCCE
Confidence                 211 11111   111  245779998  554444433434566654421  222334 45678888 99999999


Q ss_pred             EEEee--ceEEEEeecCc
Q 021744          287 LLGSV--SFIMFIGQNNK  302 (308)
Q Consensus       287 l~~s~--s~~i~~~~~~~  302 (308)
                      |+++.  +..-|+|...+
T Consensus       170 LVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  170 LVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             EEEEeCCeEEEEEecCch
Confidence            88544  77788887544

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.31  E-value=5.7  Score=39.61  Aligned_cols=147  Identities=14%  Similarity=0.228  Sum_probs=90.8

Q ss_pred             eeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEE-eCC-------CCEEEEeeCCCcEEEEeCC--
Q 021744          111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITL-PSG-------SDKLYSGSKDETVRVWDCA--  180 (308)
Q Consensus       111 ~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~-~~~-------~~~l~s~s~dg~v~~wd~~--  180 (308)
                      -..+.++|.=..+--+-|+.+.+|+.+++ .....+.+-...|..+.. -|.       =++++..+.--.|.++-+.  
T Consensus        81 ~~~mGiFpeI~RaWiTiDn~L~lWny~~~-~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~  159 (1311)
T KOG1900|consen   81 KTDMGIFPEIGRAWITIDNNLFLWNYESD-NELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFD  159 (1311)
T ss_pred             eeeeccchhhcceEEEeCCeEEEEEcCCC-CccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEec
Confidence            44555666655566678999999999986 456666666666766653 232       2344333333445555332  


Q ss_pred             --CCeE---E--EEEe-CCCeeEEEE--cCCCEEEEEcCCcEE--EEEcCCC---------------------ceeeee-
Q 021744          181 --SGQC---A--GVIN-LGGEVGCMI--SEGPWIFIGVTNFVK--AWNTQTN---------------------TDLSLS-  226 (308)
Q Consensus       181 --~~~~---~--~~~~-~~~~v~~~~--~~~~~l~~~~d~~i~--~wd~~~~---------------------~~~~~~-  226 (308)
                        ++..   .  .++. .+..+.|+.  .+|+.+++|.||.|+  +|....+                     ....+. 
T Consensus       160 ~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~  239 (1311)
T KOG1900|consen  160 EFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPG  239 (1311)
T ss_pred             cccCcccccccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCC
Confidence              1111   1  1222 355666764  578888899888554  2322221                     011233 


Q ss_pred             CCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCC
Q 021744          227 GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       227 ~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~  258 (308)
                      .+.++|..+.+...  ++.+-++.|+|.+||+..
T Consensus       240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            45679999999877  888899999999999986

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.06  E-value=2  Score=34.36  Aligned_cols=64  Identities=13%  Similarity=0.088  Sum_probs=40.3

Q ss_pred             EeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe------C---------CCeeEEE--EcCCCEEEEEcCCcEEEEEcCCC
Q 021744          158 LPSGSDKLYSGSKDETVRVWDCASGQCAGVIN------L---------GGEVGCM--ISEGPWIFIGVTNFVKAWNTQTN  220 (308)
Q Consensus       158 ~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~------~---------~~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~  220 (308)
                      +..++.+|+..+.+|.+++||+.+++.+..-.      .         ...+..+  ..+|.-+++-++|..+.|+..-+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~   97 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG   97 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence            34567899999999999999999987654331      1         1122222  34555555555666677765544


Q ss_pred             c
Q 021744          221 T  221 (308)
Q Consensus       221 ~  221 (308)
                      .
T Consensus        98 ~   98 (219)
T PF07569_consen   98 C   98 (219)
T ss_pred             e
Confidence            3

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=90.78  E-value=8.7  Score=36.96  Aligned_cols=104  Identities=12%  Similarity=0.174  Sum_probs=66.3

Q ss_pred             CCceEEeeCCCeEEEEEcCCCceeeeEeeCcccc--------eEEEEEeC----------------CCCEEEEeeCCCcE
Q 021744          119 QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV--------VSGITLPS----------------GSDKLYSGSKDETV  174 (308)
Q Consensus       119 ~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~--------v~~~~~~~----------------~~~~l~s~s~dg~v  174 (308)
                      ++....++.++.|.-.|..++ +.+..+.-....        ...+++..                .+..++.++.|+.+
T Consensus       194 gg~lYv~t~~~~V~ALDa~TG-k~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L  272 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATG-KEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL  272 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCC-cEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence            445566677888888999888 566555422110        12233321                23478889999999


Q ss_pred             EEEeCCCCeEEEEEeCCCeeE--------------E----EEcCCCEEEEEc----------CCcEEEEEcCCCcee
Q 021744          175 RVWDCASGQCAGVINLGGEVG--------------C----MISEGPWIFIGV----------TNFVKAWNTQTNTDL  223 (308)
Q Consensus       175 ~~wd~~~~~~~~~~~~~~~v~--------------~----~~~~~~~l~~~~----------d~~i~~wd~~~~~~~  223 (308)
                      .-.|.++|+.+..+..++.+.              .    +..++..++.+.          +|.|+-+|.++++..
T Consensus       273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~  349 (764)
T TIGR03074       273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV  349 (764)
T ss_pred             EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence            999999999998776433321              0    112343343221          478999999999887

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=90.63  E-value=11  Score=32.85  Aligned_cols=270  Identities=11%  Similarity=0.043  Sum_probs=132.6

Q ss_pred             CCCCceEEecCCCeEEEeecCCCC-CCCCCcccccCCCCCCccccccceeEEecCCCeeeccCCCcEEEEECCCCCCccc
Q 021744           24 GGGGLSTADTRQKVCNYWRAGKCN-RFPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        24 ~~~~~~~s~s~d~~i~~W~~~~~~-~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      ..+..+..++.|+.|.-.|..++. ++..+...      ..   ..-..-.+..+|..+.++.++.+...|..+++..-.
T Consensus        66 ~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~------~~---~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~  136 (370)
T COG1520          66 DGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLG------AV---AQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWS  136 (370)
T ss_pred             eeCCeEEEecCCCcEEEEeCCCCcEEecccCcC------cc---eeccCceEEeCCeEEEecccceEEEEECCCCcEEEE
Confidence            345566666788888888888773 12111111      00   000011222277778888888888888766654422


Q ss_pred             ccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcc---cceEEEEEeCCCCEEEEeeC--CCcEEEE
Q 021744          103 NNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ---KVVSGITLPSGSDKLYSGSK--DETVRVW  177 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~s~--dg~v~~w  177 (308)
                      ......-.........++....++.++.+...+..++ +.......-.   ..+..--. .....++.+..  ++.+.-.
T Consensus       137 ~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG-~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~  214 (370)
T COG1520         137 RNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTG-TLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYAL  214 (370)
T ss_pred             EecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCC-cEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEE
Confidence            2111100111222233334444447788888888888 4544433211   11111001 12334555555  6677778


Q ss_pred             eCCCCeEEEEEeCCCee-------E-E-----EEcCCCEEEEEcCCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCCE-E
Q 021744          178 DCASGQCAGVINLGGEV-------G-C-----MISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDL-L  242 (308)
Q Consensus       178 d~~~~~~~~~~~~~~~v-------~-~-----~~~~~~~l~~~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~~-l  242 (308)
                      |.++|+.+...+....+       . .     +..++.....+.++.+...|..+++.+ .....    ..+.-++-+ .
T Consensus       215 ~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~----~~~~~~~~~~~  290 (370)
T COG1520         215 NAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG----GSVQGSGLYTT  290 (370)
T ss_pred             EccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc----cEeccCCeeEE
Confidence            88888888775411111       1 1     122344434445778999999999988 44332    111111111 1


Q ss_pred             EEEcCCCeEEEEEcCCCCcccccceeccccCCCe-EE-EEecCCCeEE---EeeceEEEEeecCce-eEEeC
Q 021744          243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSN-RA-HFSRDVTSLL---GSVSFIMFIGQNNKG-VVCYR  308 (308)
Q Consensus       243 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v-~~-~~s~d~~~l~---~s~s~~i~~~~~~~~-~~~~~  308 (308)
                      -....||.+.++...........+..+..-.... .. .+.+++.+.+   +..+..+|....+.. +++||
T Consensus       291 ~~~~~dG~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~w~~~~~g~~~~~~~~~~~g~~y~~~~~~~~ly~~~  362 (370)
T COG1520         291 PVAGADGKVYIGFTDNDGRGSGSLYALADVPGGTLLKWSYPVGGGYSLSTVAGSDGTLYFGGDDGRGLYAFR  362 (370)
T ss_pred             eecCCCccEEEEEeccccccccceEEEeccCCCeeEEEEEeCCCceecccceeccCeEEecccCCceEEEEc
Confidence            1122578888876544310001112222212222 24 6666763332   222566666666654 77775

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=90.20  E-value=3.6  Score=36.24  Aligned_cols=43  Identities=14%  Similarity=0.067  Sum_probs=36.8

Q ss_pred             eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe
Q 021744          147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN  189 (308)
Q Consensus       147 ~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~  189 (308)
                      ......+.+++.+|.+++.+....-|.|.++|+.++..++.++
T Consensus       304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK  346 (415)
T PF14655_consen  304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK  346 (415)
T ss_pred             ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence            3445678899999999988888888999999999998888877

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.18  E-value=8.9  Score=37.83  Aligned_cols=134  Identities=7%  Similarity=-0.046  Sum_probs=78.6

Q ss_pred             eeEEecCCCe---eeccCCCcEEEEECCCCC--------Ccccccceeeee--eeeeeeecCC--ceEEeeCCCeEEEEE
Q 021744           71 AKRFANNTWG---RNNNFNNHSNNYRAGNSK--------NSNINNRAVIKT--DILCRNWVQG--NCMYGEKCKFLHSWT  135 (308)
Q Consensus        71 ~i~~s~~g~~---~s~~~d~~i~vwd~~~~~--------~~~~~~~~~~~~--~~~~~~~~~~--~~~~g~~d~~i~iwd  135 (308)
                      .+...+|+..   +..+.+-.|..+|+..-.        ++........+.  ..++.+.|.-  ..+....|+.|++..
T Consensus       105 ~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~  184 (1405)
T KOG3630|consen  105 IFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKS  184 (1405)
T ss_pred             EEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhh
Confidence            4566777766   333344468899995321        111111122222  3444555543  236677888888887


Q ss_pred             cCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-----CCCeeEEE-E-cCCCEEEE
Q 021744          136 VGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-----LGGEVGCM-I-SEGPWIFI  206 (308)
Q Consensus       136 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-----~~~~v~~~-~-~~~~~l~~  206 (308)
                      +....+....+. -....++++|+|.|..++.|-..|++.-|... .+....+.     ....+.++ | ....++++
T Consensus       185 ~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  185 TKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             hhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            764433333333 45678999999999999999999999988754 33333333     12445555 3 34445443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.17  E-value=7.4  Score=37.10  Aligned_cols=33  Identities=15%  Similarity=0.225  Sum_probs=28.3

Q ss_pred             cccceEEEEEeCC---CCEEEEeeCCCcEEEEeCCC
Q 021744          149 HQKVVSGITLPSG---SDKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       149 h~~~v~~~~~~~~---~~~l~s~s~dg~v~~wd~~~  181 (308)
                      +...|..+.|+|.   +.+|+.-..|+++++||+..
T Consensus       145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence            4568889999986   47899999999999999975

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.95  E-value=10  Score=31.51  Aligned_cols=110  Identities=8%  Similarity=0.036  Sum_probs=65.3

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCcee------
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKL------  142 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~------  142 (308)
                      ++.|+|+.+. ++......--||=...|+.+.......-+....+.+.-.+.+ ++--.+..+.++.+......      
T Consensus        90 ~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~  169 (316)
T COG3204          90 SLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQ  169 (316)
T ss_pred             ceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccce
Confidence            7999999998 665555555555445666554322222233445566666666 44456778887766543111      


Q ss_pred             eeEe---eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744          143 LTQL---EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA  180 (308)
Q Consensus       143 ~~~~---~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~  180 (308)
                      .-.+   .......-.++|+|....|..+=+-.-+.|+...
T Consensus       170 ~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         170 KIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             EEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            1111   1124567789999988777777666666666544

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=89.83  E-value=9.7  Score=31.09  Aligned_cols=148  Identities=9%  Similarity=0.047  Sum_probs=82.7

Q ss_pred             eeeeeeeeecCCc-e-EEeeCCCeEEEEEcCCCceeeeEeeCc-ccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC---
Q 021744          109 KTDILCRNWVQGN-C-MYGEKCKFLHSWTVGDGFKLLTQLEGH-QKVVSGITLPSGSDKLYSGSKDETVRVWDCASG---  182 (308)
Q Consensus       109 ~~~~~~~~~~~~~-~-~~g~~d~~i~iwd~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~---  182 (308)
                      ..+..+.+.|+.. . +...+.+.|..++.. + +.++.+.-. .+..-.+++..++.++++--.++.+.++++...   
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G-~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~   99 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-G-KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS   99 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcCC-C-CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence            3477889998754 4 667788888888864 5 556655432 356788999888877777667899999988431   


Q ss_pred             ---eEEEEEe--C----CCeeE--EEEcCCCEEEEEc-CCcEEEEEcCC--C--cee--e------eeCCCCCEEEEEEe
Q 021744          183 ---QCAGVIN--L----GGEVG--CMISEGPWIFIGV-TNFVKAWNTQT--N--TDL--S------LSGPVGQVYAMAVG  238 (308)
Q Consensus       183 ---~~~~~~~--~----~~~v~--~~~~~~~~l~~~~-d~~i~~wd~~~--~--~~~--~------~~~~~~~v~~~~~~  238 (308)
                         .....+.  .    ..-.-  +.-+.++.|++.. ..-..+|.++.  .  ...  .      .......+.+++++
T Consensus       100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~  179 (248)
T PF06977_consen  100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD  179 (248)
T ss_dssp             --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred             cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence               1122333  1    11122  3345555555554 44444554433  1  111  1      11233467899999


Q ss_pred             CC---EEEEEcCCCeEEEEEcCC
Q 021744          239 ND---LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       239 ~~---~l~~g~~dg~i~iwd~~~  258 (308)
                      |.   +++.+.....|..+|...
T Consensus       180 p~t~~lliLS~es~~l~~~d~~G  202 (248)
T PF06977_consen  180 PRTGHLLILSDESRLLLELDRQG  202 (248)
T ss_dssp             TTTTEEEEEETTTTEEEEE-TT-
T ss_pred             CCCCeEEEEECCCCeEEEECCCC
Confidence            98   777788899999999443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=89.82  E-value=16  Score=34.89  Aligned_cols=32  Identities=9%  Similarity=-0.020  Sum_probs=24.7

Q ss_pred             CCCCEEEEEEeCC-----EEEEEcCCCeEEEEEcCCC
Q 021744          228 PVGQVYAMAVGND-----LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       228 ~~~~v~~~~~~~~-----~l~~g~~dg~i~iwd~~~~  259 (308)
                      +...|..+.|+|.     .|+.=+.|+++++||+...
T Consensus       145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            3457888888875     6777788899999998754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=89.76  E-value=8.5  Score=30.31  Aligned_cols=159  Identities=13%  Similarity=0.120  Sum_probs=90.5

Q ss_pred             CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEE-EEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEE
Q 021744          128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKL-YSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFI  206 (308)
Q Consensus       128 d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~  206 (308)
                      ...|++||+.++ +.+.+-.--...+..=-...-+..+ .-.-.+|.-..+|.++-+++..+..+++-..+..+++.|+.
T Consensus        67 ~S~ir~~~L~~g-q~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgLt~d~~~Lim  145 (262)
T COG3823          67 FSKIRVSDLTTG-QEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWGLTSDDKNLIM  145 (262)
T ss_pred             cceeEEEeccCc-eEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcceeeecCCcceEe
Confidence            357999999988 4443322111222211111112232 22345788899999999999999988888889888887776


Q ss_pred             Ec-CCcEEEEEcCCCcee-----eeeC-----------CCCCEEEEEEeCC-EEEEEcCCCeEEEE-EcCCCCcccccce
Q 021744          207 GV-TNFVKAWNTQTNTDL-----SLSG-----------PVGQVYAMAVGND-LLFAGTQDGAILAW-KFNVTTNCFEPAA  267 (308)
Q Consensus       207 ~~-d~~i~~wd~~~~~~~-----~~~~-----------~~~~v~~~~~~~~-~l~~g~~dg~i~iw-d~~~~~~~~~~~~  267 (308)
                      +. ..++++-|.++....     +..+           -.+.+.+=.|..+ ++-.--+.|+|.-| |+..-.   ..+.
T Consensus       146 sdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~---~~~~  222 (262)
T COG3823         146 SDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLL---KELN  222 (262)
T ss_pred             eCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCc---hhcC
Confidence            65 667887777665332     1111           2234444445444 33344445555444 444321   2222


Q ss_pred             eccccCCCeEE-EEecCCCeEEEe
Q 021744          268 SLKVHTDSNRA-HFSRDVTSLLGS  290 (308)
Q Consensus       268 ~~~~~~~~v~~-~~s~d~~~l~~s  290 (308)
                      .-..+.+..+. ++.|++..++..
T Consensus       223 ~~~~~~nvlNGIA~~~~~~r~~iT  246 (262)
T COG3823         223 LDKSNDNVLNGIAHDPQQDRFLIT  246 (262)
T ss_pred             ccccccccccceeecCcCCeEEEe
Confidence            22345566777 999988555533

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=88.68  E-value=15  Score=31.88  Aligned_cols=142  Identities=20%  Similarity=0.255  Sum_probs=82.0

Q ss_pred             ecCCceEEeeCCCeEEEEEcCCCceeeeEeeCc--ccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCe-
Q 021744          117 WVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGH--QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-  193 (308)
Q Consensus       117 ~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~-  193 (308)
                      ..++....+..+|.|.-.|..++ ..+.....-  ...+..-.+..+|+ ++.++.++.+...|.++|+.+........ 
T Consensus        66 ~~dg~v~~~~~~G~i~A~d~~~g-~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~  143 (370)
T COG1520          66 DGDGTVYVGTRDGNIFALNPDTG-LVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSP  143 (370)
T ss_pred             eeCCeEEEecCCCcEEEEeCCCC-cEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCe
Confidence            34555566678888888888888 433322211  12222222333554 88888899999999999999999885551 


Q ss_pred             --eEEEEcCCCEEEEE-cCCcEEEEEcCCCcee-eeeCC---CCCEEE-EEEeCCEEEEEcC--CCeEEEEEcCCCC
Q 021744          194 --VGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGP---VGQVYA-MAVGNDLLFAGTQ--DGAILAWKFNVTT  260 (308)
Q Consensus       194 --v~~~~~~~~~l~~~-~d~~i~~wd~~~~~~~-~~~~~---~~~v~~-~~~~~~~l~~g~~--dg~i~iwd~~~~~  260 (308)
                        ..........+..+ .++.+...|..+++.. .....   ...+.. .....+.+..+..  ++.+.-.|..++.
T Consensus       144 ~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~  220 (370)
T COG1520         144 YYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT  220 (370)
T ss_pred             EEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCc
Confidence              11112233344444 5788888888888876 22211   111111 1122225555555  6667777777664

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.34  E-value=5.1  Score=37.02  Aligned_cols=38  Identities=32%  Similarity=0.697  Sum_probs=29.5

Q ss_pred             ceEEEEEeC----CCCEEEEeeCCCcEEEEeCCCCeEEEEEe
Q 021744          152 VVSGITLPS----GSDKLYSGSKDETVRVWDCASGQCAGVIN  189 (308)
Q Consensus       152 ~v~~~~~~~----~~~~l~s~s~dg~v~~wd~~~~~~~~~~~  189 (308)
                      .+..+++++    +..++++.+.|+++|+||+.+++++.+..
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence            445566666    67889999999999999999999977664

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.73  E-value=2.9  Score=22.92  Aligned_cols=14  Identities=36%  Similarity=0.309  Sum_probs=6.4

Q ss_pred             CCcEEEEEcCCCce
Q 021744          209 TNFVKAWNTQTNTD  222 (308)
Q Consensus       209 d~~i~~wd~~~~~~  222 (308)
                      +++|.++|..+++.
T Consensus        13 ~~~v~~id~~~~~~   26 (42)
T TIGR02276        13 SNTVSVIDTATNKV   26 (42)
T ss_pred             CCEEEEEECCCCeE
Confidence            34455555444443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=87.64  E-value=19  Score=31.83  Aligned_cols=74  Identities=9%  Similarity=-0.012  Sum_probs=48.0

Q ss_pred             CCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE---EEecC----------------CCeEE
Q 021744          230 GQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA---HFSRD----------------VTSLL  288 (308)
Q Consensus       230 ~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~---~~s~d----------------~~~l~  288 (308)
                      ..+.+++.+|+  +.|+...-|+|.++|+..+    ..++.+++..+.-..   ...+.                ..+|+
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~----~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv  383 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARG----IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV  383 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCC----hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence            46788999999  6666667799999999987    666666654432211   11111                12333


Q ss_pred             Eee----ceEEEEeecCceeEEe
Q 021744          289 GSV----SFIMFIGQNNKGVVCY  307 (308)
Q Consensus       289 ~s~----s~~i~~~~~~~~~~~~  307 (308)
                      .-.    -+.||-+++..++..|
T Consensus       384 IyaprRg~lEvW~~~~g~Rv~a~  406 (415)
T PF14655_consen  384 IYAPRRGILEVWSMRQGPRVAAF  406 (415)
T ss_pred             EEeccCCeEEEEecCCCCEEEEE
Confidence            322    6778888888888765

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=87.49  E-value=12  Score=33.72  Aligned_cols=140  Identities=9%  Similarity=0.043  Sum_probs=78.7

Q ss_pred             ecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC--------ceEEeeCCCeEEEEEcCCCceeee
Q 021744           75 ANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG--------NCMYGEKCKFLHSWTVGDGFKLLT  144 (308)
Q Consensus        75 s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~g~~d~~i~iwd~~~~~~~~~  144 (308)
                      ..+.++  ..|..-..+.--|++.|+.+... ..+. .+ .+.|.|..        ..+.|-.+..|.-.|++-....+.
T Consensus       476 ~~dssli~~dg~~~~kLykmDIErGkvveeW-~~~d-dv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEW-DLKD-DV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             cCCcceEEecCCCcccceeeecccceeeeEe-ecCC-cc-eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence            344444  55666666666677666554211 1111 12 45555544        236677777777778764322222


Q ss_pred             EeeCcccceEEEEEe----CCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEE--EEcCCCEEEEEcCCcEEEEEc
Q 021744          145 QLEGHQKVVSGITLP----SGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGC--MISEGPWIFIGVTNFVKAWNT  217 (308)
Q Consensus       145 ~~~~h~~~v~~~~~~----~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~--~~~~~~~l~~~~d~~i~~wd~  217 (308)
                      .-+ .++-++.-.|+    ....+++.+|..|-|++||--.......+. .+..+..  +..+|+++++.+...+.+-|+
T Consensus       553 v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~  631 (776)
T COG5167         553 VVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDV  631 (776)
T ss_pred             eee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEec
Confidence            111 12222222222    234689999999999999944322222233 3333433  468899999888888888887


Q ss_pred             C
Q 021744          218 Q  218 (308)
Q Consensus       218 ~  218 (308)
                      +
T Consensus       632 ~  632 (776)
T COG5167         632 P  632 (776)
T ss_pred             c
Confidence            5

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=86.75  E-value=17  Score=30.28  Aligned_cols=96  Identities=14%  Similarity=0.306  Sum_probs=58.0

Q ss_pred             CCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEee------CCCcEEEEeCCCCeEEEEEe-----CCCeeE
Q 021744          127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS------KDETVRVWDCASGQCAGVIN-----LGGEVG  195 (308)
Q Consensus       127 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s------~dg~v~~wd~~~~~~~~~~~-----~~~~v~  195 (308)
                      ....|.+||..+. +-...-.+-.+.|+++.|..+.++++.|.      ....+..||+.+..-...-.     .++++.
T Consensus        14 ~C~~lC~yd~~~~-qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~   92 (281)
T PF12768_consen   14 PCPGLCLYDTDNS-QWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT   92 (281)
T ss_pred             CCCEEEEEECCCC-EeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence            4567999998876 33333334568899999986666677664      45678899988764321111     235666


Q ss_pred             EEE---cCCC-EEEEEc----CCcEEEEEcCCCcee
Q 021744          196 CMI---SEGP-WIFIGV----TNFVKAWNTQTNTDL  223 (308)
Q Consensus       196 ~~~---~~~~-~l~~~~----d~~i~~wd~~~~~~~  223 (308)
                      .+.   .+.. +.++|.    +..|..||-.+...+
T Consensus        93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i  128 (281)
T PF12768_consen   93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI  128 (281)
T ss_pred             EEEeeccCCceEEEeceecCCCceEEEEcCCceEec
Confidence            653   2443 444443    336777875544433

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=86.36  E-value=17  Score=29.79  Aligned_cols=140  Identities=14%  Similarity=0.105  Sum_probs=74.9

Q ss_pred             ceEEEEEeCCCCEEEEee-CCCcEEEEeCCCCeEEEEEeCCCeeE--EEEcCCCEEEEEc-CCcEEEE-EcCCCcee--e
Q 021744          152 VVSGITLPSGSDKLYSGS-KDETVRVWDCASGQCAGVINLGGEVG--CMISEGPWIFIGV-TNFVKAW-NTQTNTDL--S  224 (308)
Q Consensus       152 ~v~~~~~~~~~~~l~s~s-~dg~v~~wd~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~-d~~i~~w-d~~~~~~~--~  224 (308)
                      .+.+.+++++++.++... .++.-.+|-...+...........+.  ++.+++...++.. +....++ +...++..  .
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~  104 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE  104 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence            688999999998776655 23333344333333333322222222  2345566655544 4455555 33333322  2


Q ss_pred             eeCC--CCCEEEEEEeCC--EE---EEEcCCCeEEEEEcCCCCcc-----cccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          225 LSGP--VGQVYAMAVGND--LL---FAGTQDGAILAWKFNVTTNC-----FEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       225 ~~~~--~~~v~~~~~~~~--~l---~~g~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      ....  ...|.++.+|||  .+   +....++.|.+--+......     ..++.........+.. .|.+++.+++...
T Consensus       105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~  184 (253)
T PF10647_consen  105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR  184 (253)
T ss_pred             ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence            2222  228999999999  33   33345678887765432211     1111222233456777 9999998887544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=86.23  E-value=11  Score=27.40  Aligned_cols=99  Identities=9%  Similarity=0.128  Sum_probs=62.8

Q ss_pred             EEeeCCCeEEEEEcCCCc-------eeeeEeeCcccceEEEEEeC---C--CCEEEEeeCCCcEEEEeCCCCeEEEEEeC
Q 021744          123 MYGEKCKFLHSWTVGDGF-------KLLTQLEGHQKVVSGITLPS---G--SDKLYSGSKDETVRVWDCASGQCAGVINL  190 (308)
Q Consensus       123 ~~g~~d~~i~iwd~~~~~-------~~~~~~~~h~~~v~~~~~~~---~--~~~l~s~s~dg~v~~wd~~~~~~~~~~~~  190 (308)
                      +.+..-+.|.|+++....       ..++.|. -...|++++--+   +  ...|+.|+. ..+..||+....-+..-..
T Consensus        14 ~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyke~   91 (136)
T PF14781_consen   14 ACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYKEV   91 (136)
T ss_pred             EEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhhhC
Confidence            556677889998876331       2233333 346777776432   2  345666554 6799999997765544444


Q ss_pred             CCeeEEEE------cCCCEEEEEcCCcEEEEEcCCCcee
Q 021744          191 GGEVGCMI------SEGPWIFIGVTNFVKAWNTQTNTDL  223 (308)
Q Consensus       191 ~~~v~~~~------~~~~~l~~~~d~~i~~wd~~~~~~~  223 (308)
                      +.-+.++.      .+..++++|.+..|.-||....+..
T Consensus        92 ~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   92 PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF  130 (136)
T ss_pred             ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence            44455442      2567788888999999887766655

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=86.09  E-value=6.2  Score=30.15  Aligned_cols=32  Identities=6%  Similarity=0.019  Sum_probs=25.7

Q ss_pred             cceEEEEEeCCC------CEEEEeeCCCcEEEEeCCCC
Q 021744          151 KVVSGITLPSGS------DKLYSGSKDETVRVWDCASG  182 (308)
Q Consensus       151 ~~v~~~~~~~~~------~~l~s~s~dg~v~~wd~~~~  182 (308)
                      ..|..++|+|.|      -+|+..+.++.|.+|.....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            488999999954      35888899999999986643

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=85.26  E-value=27  Score=31.08  Aligned_cols=28  Identities=32%  Similarity=0.627  Sum_probs=22.8

Q ss_pred             CEEEEEEeCC--EEEEEcCCCeEEEEEcCC
Q 021744          231 QVYAMAVGND--LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       231 ~v~~~~~~~~--~l~~g~~dg~i~iwd~~~  258 (308)
                      .|.++...+.  .+++-+.+|.|.+|++..
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            4888999887  899999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=85.04  E-value=18  Score=32.09  Aligned_cols=149  Identities=15%  Similarity=0.110  Sum_probs=83.6

Q ss_pred             eeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeC-ccc----ceE-EEEEeCCCCEEEEeeCCCcEEEE-eCCCC-
Q 021744          111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEG-HQK----VVS-GITLPSGSDKLYSGSKDETVRVW-DCASG-  182 (308)
Q Consensus       111 ~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~-h~~----~v~-~~~~~~~~~~l~s~s~dg~v~~w-d~~~~-  182 (308)
                      +..+-..|+|..++--....+.++++.+..-..+++-. ..+    .|+ .+..-..+.-++.++.||-|.-| |.+.+ 
T Consensus       223 v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~  302 (733)
T COG4590         223 VSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDG  302 (733)
T ss_pred             hHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCC
Confidence            55566778887644444477888887654211222211 111    111 11222345668888999999888 54432 


Q ss_pred             e----EEEEEe-CCCeeEEEEcCCC--EEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEE
Q 021744          183 Q----CAGVIN-LGGEVGCMISEGP--WIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAIL  252 (308)
Q Consensus       183 ~----~~~~~~-~~~~v~~~~~~~~--~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~  252 (308)
                      +    .++.++ .+.++..+.++.+  -+++-+ .|++.++.....+..-+..--..+.-+++||.  ++++ -+.|.++
T Consensus       303 ~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~-e~~gki~  381 (733)
T COG4590         303 QPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLS-EDQGKIR  381 (733)
T ss_pred             CCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchhee-ecCCceE
Confidence            2    223333 3355555655532  233333 78888776655554422222235566889998  5554 4568999


Q ss_pred             EEEcCCCC
Q 021744          253 AWKFNVTT  260 (308)
Q Consensus       253 iwd~~~~~  260 (308)
                      ++.+++..
T Consensus       382 ~~~l~Nr~  389 (733)
T COG4590         382 LAQLENRN  389 (733)
T ss_pred             EEEecCCC
Confidence            99998864

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=84.93  E-value=42  Score=33.15  Aligned_cols=128  Identities=12%  Similarity=0.149  Sum_probs=79.1

Q ss_pred             CCeEEEEEcCCCceeeeEeeC--cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe---CCCeeEEEEcCCC
Q 021744          128 CKFLHSWTVGDGFKLLTQLEG--HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN---LGGEVGCMISEGP  202 (308)
Q Consensus       128 d~~i~iwd~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~---~~~~v~~~~~~~~  202 (308)
                      +|.++.|+.-...+.+.-+..  -..+|.  +..|-..++++| ....+++||+...++++...   .+..+..+...+.
T Consensus       911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~  987 (1205)
T KOG1898|consen  911 SGFVYTYKFVRNGDKLELLHKTEIPGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGA  987 (1205)
T ss_pred             CCceEEEEEEecCceeeeeeccCCCccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeecce
Confidence            566777776433232322211  123333  445544444443 45689999999888776655   2455666667788


Q ss_pred             EEEEEc--CC-cEEEEEcCCCceeeeeCC--CCCEEEEEEeCC-EEEEEcCCCeEEEEEcCC
Q 021744          203 WIFIGV--TN-FVKAWNTQTNTDLSLSGP--VGQVYAMAVGND-LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       203 ~l~~~~--d~-~i~~wd~~~~~~~~~~~~--~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~  258 (308)
                      .+++|.  ++ ....|+-...+.+.+...  ...|+++.+-.. .+|.+..-|.+.+..+..
T Consensus       988 RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen  988 RIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             EEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEecCCceeeccccCcEEEEECCC
Confidence            888887  33 345677666666655432  346777776655 899888888888887654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=84.92  E-value=22  Score=29.96  Aligned_cols=104  Identities=12%  Similarity=0.122  Sum_probs=55.2

Q ss_pred             EcCCCEEEEEcCCcE-EEEEcCCCcee-eeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccc-cceeccccC
Q 021744          198 ISEGPWIFIGVTNFV-KAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFE-PAASLKVHT  273 (308)
Q Consensus       198 ~~~~~~l~~~~d~~i-~~wd~~~~~~~-~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~  273 (308)
                      .+++++++++..|.+ .-||--...-. .-......|.+|.|.|+ .|......|.|++=+.......+. .+..+....
T Consensus       153 ~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~  232 (302)
T PF14870_consen  153 SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNG  232 (302)
T ss_dssp             -TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--
T ss_pred             CCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCc
Confidence            478999999997755 46775433222 22234578999999999 444455888998887322211011 111222223


Q ss_pred             CCeEE-EEecCCCeEEEeeceEEEEeecC
Q 021744          274 DSNRA-HFSRDVTSLLGSVSFIMFIGQNN  301 (308)
Q Consensus       274 ~~v~~-~~s~d~~~l~~s~s~~i~~~~~~  301 (308)
                      ..+.. +|.+++...+++++..|+....+
T Consensus       233 ~~~ld~a~~~~~~~wa~gg~G~l~~S~Dg  261 (302)
T PF14870_consen  233 YGILDLAYRPPNEIWAVGGSGTLLVSTDG  261 (302)
T ss_dssp             S-EEEEEESSSS-EEEEESTT-EEEESST
T ss_pred             eeeEEEEecCCCCEEEEeCCccEEEeCCC
Confidence            33555 99999888888777777765543

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=84.76  E-value=3.4  Score=20.65  Aligned_cols=24  Identities=21%  Similarity=0.396  Sum_probs=19.2

Q ss_pred             CEEEEEEeCCEEEEEcCCCeEEEE
Q 021744          231 QVYAMAVGNDLLFAGTQDGAILAW  254 (308)
Q Consensus       231 ~v~~~~~~~~~l~~g~~dg~i~iw  254 (308)
                      .|.+++..+.+++.++..+.+|+|
T Consensus         3 ~i~aia~g~~~vavaTS~~~lRif   26 (27)
T PF12341_consen    3 EIEAIAAGDSWVAVATSAGYLRIF   26 (27)
T ss_pred             eEEEEEccCCEEEEEeCCCeEEec
Confidence            577888887788888888888887

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=84.32  E-value=0.28  Score=43.08  Aligned_cols=140  Identities=13%  Similarity=0.118  Sum_probs=90.5

Q ss_pred             eeecCC-ceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCE-EEEeeCCCcEEEEeCCCCeEEEEEe---
Q 021744          115 RNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDK-LYSGSKDETVRVWDCASGQCAGVIN---  189 (308)
Q Consensus       115 ~~~~~~-~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s~dg~v~~wd~~~~~~~~~~~---  189 (308)
                      .+-+.+ +.+.++.+..+..||-...  ..-.+. .++....++|+.++.. ++.+-..+.+.+||+.+.... ++.   
T Consensus        41 ~w~~e~~nlavaca~tiv~~YD~agq--~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qLE~gg  116 (615)
T KOG2247|consen   41 RWRPEGHNLAVACANTIVIYYDKAGQ--VILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QLESGG  116 (615)
T ss_pred             eEecCCCceehhhhhhHHHhhhhhcc--eecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HHhccC
Confidence            344443 4466777777777875432  222222 3456678888887755 466677889999999864221 122   


Q ss_pred             -CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCceeeeeC-CCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCC
Q 021744          190 -LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDLSLSG-PVGQVYAMAVGND-LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       190 -~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~-~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~  258 (308)
                       +........+....++.+. .+.+.+++..+.......+ |...++++++.+. +.+.++.|..+.+-...+
T Consensus       117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~~qeg  189 (615)
T KOG2247|consen  117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVTTQEG  189 (615)
T ss_pred             cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHhhhcc
Confidence             1111112234556677776 7899999988877775555 8889999999988 888888887665554443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.23  E-value=39  Score=32.09  Aligned_cols=77  Identities=8%  Similarity=-0.002  Sum_probs=44.1

Q ss_pred             CCCCCccccccc-eeEEecCCCeeeccCCCcEEEEECCCCCCcc--cccceeeeeeeeeeeecCCceEEeeCCCeEEEEE
Q 021744           59 PLPPAATANGAA-AKRFANNTWGRNNNFNNHSNNYRAGNSKNSN--INNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWT  135 (308)
Q Consensus        59 ~~~~~~~gh~~~-~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd  135 (308)
                      .+....--|... .+.|+.+...+.-..||++++|++-......  .........+..|.++..|-.+-...+..+.+-+
T Consensus        75 lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~  154 (829)
T KOG2280|consen   75 LLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILING  154 (829)
T ss_pred             chHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEecCCcEEEEcC
Confidence            344444444444 6888888877888999999999984221111  0111122237778888877554333333444433

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.44  E-value=23  Score=31.50  Aligned_cols=111  Identities=6%  Similarity=-0.024  Sum_probs=69.4

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeee---eeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEe
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKT---DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQL  146 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~  146 (308)
                      ++.||+|.+. |.--.|++|.+.+....++.......++..   +.... |.+..-+.--.+.-+-+|.+......++..
T Consensus        71 SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~-W~~s~e~A~i~~~G~e~y~v~pekrslRlV  149 (657)
T KOG2377|consen   71 SIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFC-WTSSTEIAFITDQGIEFYQVLPEKRSLRLV  149 (657)
T ss_pred             EEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEE-EecCeeEEEEecCCeEEEEEchhhhhhhhh
Confidence            8999999999 999999999999985444333223223222   33333 333322333344556777776655567777


Q ss_pred             eCcccceEEEEEeCCCCEEEEee--CCCcEEEEeCCCC
Q 021744          147 EGHQKVVSGITLPSGSDKLYSGS--KDETVRVWDCASG  182 (308)
Q Consensus       147 ~~h~~~v~~~~~~~~~~~l~s~s--~dg~v~~wd~~~~  182 (308)
                      +.|.-.|.-..|.++.+.++-++  ..+++.=+.++++
T Consensus       150 ks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  150 KSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             hhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            78888898899998877644333  3444444444444

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=83.29  E-value=26  Score=29.33  Aligned_cols=136  Identities=11%  Similarity=0.177  Sum_probs=88.7

Q ss_pred             ccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeE---EEEEeCCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee--
Q 021744          150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC---AGVINLGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL--  223 (308)
Q Consensus       150 ~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~---~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~--  223 (308)
                      .+-+..+.++  ++++..+..+.-+++.|+.+...   +..+...+-..++.-.|++..++. +.-+.+.|+.+.+..  
T Consensus        86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~l  163 (370)
T COG5276          86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQL  163 (370)
T ss_pred             hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence            4556667776  45777777888899999987543   333334455667778888888777 777888888765433  


Q ss_pred             --eeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcCCCCccccccee-ccccCCCeEE-EEecCCCeEEEe
Q 021744          224 --SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAAS-LKVHTDSNRA-HFSRDVTSLLGS  290 (308)
Q Consensus       224 --~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~-~~s~d~~~l~~s  290 (308)
                        ...........+++|.++-..+..|+-+.+-|+..+.   +++.. .......+.. ..+++..+++.-
T Consensus       164 agrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~---sPvli~~~n~g~g~~sv~vsdnr~y~vvy  231 (370)
T COG5276         164 AGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPH---SPVLIGSYNTGPGTYSVSVSDNRAYLVVY  231 (370)
T ss_pred             eeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCC---CCeEEEEEecCCceEEEEecCCeeEEEEc
Confidence              3334445567899999977777889999999999864   22221 1122224555 555555555533

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=83.26  E-value=0.13  Score=45.06  Aligned_cols=133  Identities=16%  Similarity=0.170  Sum_probs=88.8

Q ss_pred             eEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEE--cCCCEEE--EEcCCcEEEEEcCCCceee--ee
Q 021744          153 VSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI--SEGPWIF--IGVTNFVKAWNTQTNTDLS--LS  226 (308)
Q Consensus       153 v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~--~~~~~l~--~~~d~~i~~wd~~~~~~~~--~~  226 (308)
                      .....|-+.+..++.++.+..|..||-. ++.......+.....+.  .++..++  +-..+.+.+||+.+.....  ..
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g  115 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG  115 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence            3455677877778888888999999944 55554444333332222  2344433  3348899999998765442  22


Q ss_pred             C-CCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeec
Q 021744          227 G-PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVS  292 (308)
Q Consensus       227 ~-~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s  292 (308)
                      + +....  +.|++.  .++.+...|.+.|++-.+.    +.+...-.|...+.+ ++.+.+..+...++
T Consensus       116 g~~s~sl--l~wsKg~~el~ig~~~gn~viynhgts----R~iiv~Gkh~RRgtq~av~lEd~vil~dcd  179 (615)
T KOG2247|consen  116 GTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTS----RRIIVMGKHQRRGTQIAVTLEDYVILCDCD  179 (615)
T ss_pred             CcchHHH--HhhccCCccccccccccceEEEeccch----hhhhhhcccccceeEEEecccceeeecCcH
Confidence            2 22222  667777  7888889999999998875    445555558888888 99999887777664

>smart00564 PQQ beta-propeller repeat

Probab=83.24  E-value=3.5  Score=21.22  Aligned_cols=25  Identities=28%  Similarity=0.414  Sum_probs=19.5

Q ss_pred             EEEEeeCCCcEEEEeCCCCeEEEEE
Q 021744          164 KLYSGSKDETVRVWDCASGQCAGVI  188 (308)
Q Consensus       164 ~l~s~s~dg~v~~wd~~~~~~~~~~  188 (308)
                      .++.++.++.+..+|.++|+.+.++
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            5777788888888888888877653

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=82.02  E-value=30  Score=29.15  Aligned_cols=158  Identities=11%  Similarity=0.076  Sum_probs=81.3

Q ss_pred             CCceEEecCCCeEEEeecCCCCC-CCCCcccccCCCCCCccccccceeEEec--CCCe--eeccCCCcEEEEECCCCCCc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNR-FPCPYLHRELPLPPAATANGAAAKRFAN--NTWG--RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~~~~~~~~~gh~~~~i~~s~--~g~~--~s~~~d~~i~vwd~~~~~~~  100 (308)
                      ...++.++.|++|.-|+..-.-. +...++.-+    ....+..-..+++.+  .+..  ++--..++|.|+|-.-.+..
T Consensus       100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d----~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~  175 (336)
T TIGR03118       100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVD----ASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP  175 (336)
T ss_pred             ceeEEEEeCCceEEeecCcCCcccccccEEEEc----cCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc
Confidence            35678899999999998654400 000000000    000111111455543  3444  66667899999987422211


Q ss_pred             cc--------cc------ceeeeeeeeeee---ecCCce-EEeeCCCeEEEEEcCCCceeeeEee--CcccceEEEEEeC
Q 021744          101 NI--------NN------RAVIKTDILCRN---WVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLE--GHQKVVSGITLPS  160 (308)
Q Consensus       101 ~~--------~~------~~~~~~~~~~~~---~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~--~h~~~v~~~~~~~  160 (308)
                      ..        +.      ...-.....+.|   .+++.- +.|..-|.|-+||+...  .++.+.  +.-...+.|+..|
T Consensus       176 ~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~as~g~LNaPWG~a~AP  253 (336)
T TIGR03118       176 LPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRVASSGRLNAPWGLAIAP  253 (336)
T ss_pred             CCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc--EEEEeccCCcccCCceeeeCh
Confidence            00        00      000000111122   122211 44555678888887643  455443  2334456677644


Q ss_pred             ------CCCEEEEeeCCCcEEEEeCCCCeEEEEEe
Q 021744          161 ------GSDKLYSGSKDETVRVWDCASGQCAGVIN  189 (308)
Q Consensus       161 ------~~~~l~s~s~dg~v~~wd~~~~~~~~~~~  189 (308)
                            .+.+|+---.||+|..+|..+++.+..+.
T Consensus       254 a~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~  288 (336)
T TIGR03118       254 ESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL  288 (336)
T ss_pred             hhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence                  35566666678888888888888776665

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF01011 PQQ: PQQ enzyme repeat family

Probab=81.74  E-value=5.1  Score=21.68  Aligned_cols=26  Identities=19%  Similarity=0.327  Sum_probs=19.6

Q ss_pred             EEEeeCCCcEEEEeCCCCeEEEEEeC
Q 021744          165 LYSGSKDETVRVWDCASGQCAGVINL  190 (308)
Q Consensus       165 l~s~s~dg~v~~wd~~~~~~~~~~~~  190 (308)
                      ++.++.+|.+.-.|.++|+.+..++.
T Consensus         3 v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    3 VYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            45557788888888888888877763

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=80.92  E-value=12  Score=29.67  Aligned_cols=58  Identities=12%  Similarity=0.133  Sum_probs=38.4

Q ss_pred             CEEEEEEeC-CEEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          231 QVYAMAVGN-DLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       231 ~v~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      ....++-.+ |.|+.+.....|.+|++....  .+++.++..- +.|.. .++.-|+||++--
T Consensus        19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~--~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE   78 (215)
T PF14761_consen   19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEE--CPLLCTFSTV-GRVLQLVYSEAGDYLVTLE   78 (215)
T ss_pred             CcceeeccCCceEEEEcCCCEEEEEEcccCC--CceeEEEcch-hheeEEEeccccceEEEEE
Confidence            344455555 644333566789999999432  2666667654 55556 9999999999654

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=80.84  E-value=33  Score=29.00  Aligned_cols=85  Identities=16%  Similarity=0.164  Sum_probs=56.5

Q ss_pred             EEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEc---------------------CCcEE
Q 021744          155 GITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGV---------------------TNFVK  213 (308)
Q Consensus       155 ~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~---------------------d~~i~  213 (308)
                      +-.|+ ++++.++=+..|.+..+|.++|+.......++....+...|.++++|.                     ..-|.
T Consensus       207 SPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~  285 (335)
T TIGR03032       207 SPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFAGDFAFVGLSKLRESRVFGGLPIEERLDALGCGVA  285 (335)
T ss_pred             CCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcccceeCCEEEEEeccccCCCCcCCCchhhhhhhhcccEE
Confidence            34455 577888888999999999988876665555554444432366665542                     12356


Q ss_pred             EEEcCCCcee---eeeCCCCCEEEEEEeCC
Q 021744          214 AWNTQTNTDL---SLSGPVGQVYAMAVGND  240 (308)
Q Consensus       214 ~wd~~~~~~~---~~~~~~~~v~~~~~~~~  240 (308)
                      +.|++++...   .+.+.-.++.++++.|.
T Consensus       286 vidl~tG~vv~~l~feg~v~EifdV~vLPg  315 (335)
T TIGR03032       286 VIDLNSGDVVHWLRFEGVIEEIYDVAVLPG  315 (335)
T ss_pred             EEECCCCCEEEEEEeCCceeEEEEEEEecC
Confidence            7788888765   45555667788888777

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.79  E-value=41  Score=30.01  Aligned_cols=137  Identities=7%  Similarity=-0.019  Sum_probs=79.3

Q ss_pred             EEeeCCCeEEEEEcCCCc--eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCC-----CeeE
Q 021744          123 MYGEKCKFLHSWTVGDGF--KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-----GEVG  195 (308)
Q Consensus       123 ~~g~~d~~i~iwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~-----~~v~  195 (308)
                      +.+-..|.+.-|-+....  .++.--...+++|.++.|++|.+.++.--.+.+|.+++....+....+.+.     ..+-
T Consensus        37 lfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~Il  116 (657)
T KOG2377|consen   37 LFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANIL  116 (657)
T ss_pred             EEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeE
Confidence            444444555555543221  122211234679999999999999999999999999998654444333321     2233


Q ss_pred             EE-EcCCCEEEEEcCCcEEEEEcCCC--ceeeeeCCCCCEEEEEEeCC----EEEEEcCCCeEEEEEcCCC
Q 021744          196 CM-ISEGPWIFIGVTNFVKAWNTQTN--TDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       196 ~~-~~~~~~l~~~~d~~i~~wd~~~~--~~~~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~  259 (308)
                      .+ |.+..-++.-.+.-+-+|-....  +....+.|.-.|.=-.|.++    +|+++-..+.+.=+.++++
T Consensus       117 GF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  117 GFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             EEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            33 56666666555555555544332  22244556666776777777    3444435555555666553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	308
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-08
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-08
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-04
2h9l_A	329	Wdr5delta23 Length = 329		3e-04
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-04
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-04
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-04
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-04
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-04
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-04
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-04
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-04
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-04
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-04
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-04
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-04
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		5e-04
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		5e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		6e-04

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 9/145 (6%)
Query: 123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182
           + G   + L  W    G + +  L GH   V  + L     ++ SGS+D T+RVWD  +G
Sbjct: 173 ISGSTDRTLKVWNAETG-ECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETG 229
Query: 183 QCAGVINLG--GEVGCMISEGPWIFIGVTNF-VKAWNTQTNTDL-SLSGPVGQVYAMAVG 238
           QC  V+ +G    V C+  +G  +  G  +F VK W+ +T T L +L G   +VY++   
Sbjct: 230 QCLHVL-MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD 288
Query: 239 NDLLFAGTQDGAILAWKFNVTTNCF 263
              + +G+ D +I  W    T NC 
Sbjct: 289 GIHVVSGSLDTSIRVWDVE-TGNCI 312

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 21/187 (11%)
Query: 94  AGNSKNSNINNRAVIKTDILCRNWV---QGNCM-YGEKCKFLHSWTVGDGFKLLTQLEGH 149
           A N    N+N  +   +D+  R+      G  +  G + + +  W + +  K++  L+GH
Sbjct: 106 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI-ENRKIVMILQGH 164
Query: 150 QKVVSGIT-LPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-GGEVGCMISEGPWIFIG 207
           ++ +  +   PSG DKL SGS D TVR+WD  +GQC+  +++  G     +S G   +I 
Sbjct: 165 EQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA 223
Query: 208 VTNF---VKAWNTQT--------NTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAW 254
             +    V+ W+++T        + + S +G    VY++    D   + +G+ D ++  W
Sbjct: 224 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283
Query: 255 KFNVTTN 261
                 N
Sbjct: 284 NLQNANN 290

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K +  W   DG K    + GH+  +S +   S S+ L S S D+T+++WD +SG+C   +
Sbjct: 67  KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 125
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
                      +G   ++   NF    N Q+N                    L+ +G+ D
Sbjct: 126 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 150
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
            ++  W    T  C +   +L  H+D   A HF+RD  SL+ S S+
Sbjct: 151 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 191

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K +  W   DG K    + GH+  +S +   S S+ L S S D+T+++WD +SG+C   +
Sbjct: 62  KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 120
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
                      +G   ++   NF    N Q+N                    L+ +G+ D
Sbjct: 121 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 145
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
            ++  W    T  C +   +L  H+D   A HF+RD  SL+ S S+
Sbjct: 146 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 186

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K +  W   DG K    + GH+  +S +   S S+ L S S D+T+++WD +SG+C   +
Sbjct: 69  KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 127
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
                      +G   ++   NF    N Q+N                    L+ +G+ D
Sbjct: 128 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 152
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
            ++  W    T  C +   +L  H+D   A HF+RD  SL+ S S+
Sbjct: 153 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 193

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K +  W   DG K    + GH+  +S +   S S+ L S S D+T+++WD +SG+C   +
Sbjct: 51  KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
                      +G   ++   NF    N Q+N                    L+ +G+ D
Sbjct: 110 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 134
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
            ++  W    T  C +   +L  H+D   A HF+RD  SL+ S S+
Sbjct: 135 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 175

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K +  W   DG K    + GH+  +S +   S S+ L S S D+T+++WD +SG+C   +
Sbjct: 45  KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
                      +G   ++   NF    N Q+N                    L+ +G+ D
Sbjct: 104 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 128
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
            ++  W    T  C +   +L  H+D   A HF+RD  SL+ S S+
Sbjct: 129 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 169

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K +  W   DG K    + GH+  +S +   S S+ L S S D+T+++WD +SG+C   +
Sbjct: 44  KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 102
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
                      +G   ++   NF    N Q+N                    L+ +G+ D
Sbjct: 103 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 127
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
            ++  W    T  C +   +L  H+D   A HF+RD  SL+ S S+
Sbjct: 128 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 168

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K +  W   DG K    + GH+  +S +   S S+ L S S D+T+++WD +SG+C   +
Sbjct: 51  KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
                      +G   ++   NF    N Q+N                    L+ +G+ D
Sbjct: 110 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 134
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
            ++  W    T  C +   +L  H+D   A HF+RD  SL+ S S+
Sbjct: 135 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 175

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K +  W   DG K    + GH+  +S +   S S+ L S S D+T+++WD +SG+C   +
Sbjct: 50  KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 108
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
                      +G   ++   NF    N Q+N                    L+ +G+ D
Sbjct: 109 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 133
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
            ++  W    T  C +   +L  H+D   A HF+RD  SL+ S S+
Sbjct: 134 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 174

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K +  W   DG K    + GH+  +S +   S S+ L S S D+T+++WD +SG+C   +
Sbjct: 45  KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
                      +G   ++   NF    N Q+N                    L+ +G+ D
Sbjct: 104 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 128
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
            ++  W    T  C +   +L  H+D   A HF+RD  SL+ S S+
Sbjct: 129 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 169

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K +  W   DG K    + GH+  +S +   S S+ L S S D+T+++WD +SG+C   +
Sbjct: 41  KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 99
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
                      +G   ++   NF    N Q+N                    L+ +G+ D
Sbjct: 100 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 124
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
            ++  W    T  C +   +L  H+D   A HF+RD  SL+ S S+
Sbjct: 125 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 165

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K +  W   DG K    + GH+  +S +   S S+ L S S D+T+++WD +SG+C   +
Sbjct: 48  KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
                      +G   ++   NF    N Q+N                    L+ +G+ D
Sbjct: 107 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 131
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
            ++  W    T  C +   +L  H+D   A HF+RD  SL+ S S+
Sbjct: 132 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 172

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG 182
           + G + K +  W V  G  L+T L GH   V G+   SG   + S + D+T+RVWD  + 
Sbjct: 312 LSGSRDKTIKMWDVSTGMCLMT-LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370
Query: 183 QCAGVINLGGEVGCMI---SEGPWIFIG-VTNFVKAWN 216
           +C   +N        +      P++  G V   VK W 
Sbjct: 371 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K +  W   DG K    + GH+  +S +   S S+ L S S D+T+++WD +SG+C   +
Sbjct: 48  KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
                      +G   ++   NF    N Q+N                    L+ +G+ D
Sbjct: 107 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 131
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
            ++  W    T  C +   +L  H+D   A HF+RD  SL+ S S+
Sbjct: 132 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 172

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K +  W   DG K    + GH+  +S +   S S+ L S S D+T+++WD +SG+C   +
Sbjct: 51  KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
                      +G   ++   NF    N Q+N                    L+ +G+ D
Sbjct: 110 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 134
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
            ++  W    T  C +   +L  H+D   A HF+RD  SL+ S S+
Sbjct: 135 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 175

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K +  W   DG K    + GH+  +S +   S S+ L S S D+T+++WD +SG+C   +
Sbjct: 46  KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 104
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
                      +G   ++   NF    N Q+N                    L+ +G+ D
Sbjct: 105 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 129
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
            ++  W    T  C +   +L  H+D   A HF+RD  SL+ S S+
Sbjct: 130 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 170

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K +  W   DG K    + GH+  +S +   S S+ L S S D+T+++WD +SG+C   +
Sbjct: 48  KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
                      +G   ++   NF    N Q+N                    L+ +G+ D
Sbjct: 107 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 131
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
            ++  W    T  C +   +L  H+D   A HF+RD  SL+ S S+
Sbjct: 132 ESVRIWDVK-TGKCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 172

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K +  W   DG K    + GH+  +S +   S S+ L S S D+T+++WD +SG+C   +
Sbjct: 48  KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
                      +G   ++   NF    N Q+N                    L+ +G+ D
Sbjct: 107 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 131
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
            ++  W    T  C +   +L  H+D   A HF+RD  SL+ S S+
Sbjct: 132 ESVRIWDVK-TGMCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 172

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 42/166 (25%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K +  W   DG K    + GH+  +S +   S S+ L S S D+T+++WD +SG+C   +
Sbjct: 48  KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
                      +G   ++   NF    N Q+N                    L+ +G+ D
Sbjct: 107 -----------KGHSNYVFCCNF----NPQSN--------------------LIVSGSFD 131
Query: 249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF 293
            ++  W    T  C +   +L  H+D   A HF+RD  SL+ S S+
Sbjct: 132 ESVRIWDVK-TGMCLK---TLPAHSDPVSAVHFNRD-GSLIVSSSY 172

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 26/144 (18%)
Query: 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-----VGCM----- 197
           GH K V  +     + ++ S S+D T+++W+   G+C   I+ GGE     V C+     
Sbjct: 470 GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPN 528
Query: 198 -----ISEGPWIFIGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQD 248
                I    W        VK WN  +N  L  +L+G  G V  +AV  D  L  +G +D
Sbjct: 529 TLQPTIVSASW-----DKTVKVWNL-SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKD 582
Query: 249 GAILAWKFNVTTNCFEPAASLKVH 272
           G +L W        +   A+  +H
Sbjct: 583 GVVLLWDLAEGKKLYSLEANSVIH 606

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	308
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.98
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.98
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.98
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.98
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.96
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.86
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.85
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.85
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.84
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.84
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.83
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.83
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.83
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.82
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.82
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.81
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.81
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.8
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.8
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.79
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.79
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.78
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.75
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.75
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.74
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.72
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.72
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.72
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.72
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.7
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.67
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.65
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.64
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.64
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.64
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.63
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.62
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.62
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.61
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.61
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.6
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.6
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.59
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.59
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.58
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.57
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.57
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.56
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.55
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.54
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.52
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.5
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.49
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.48
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.48
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.47
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.47
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.45
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.44
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.43
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.42
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.4
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.39
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.33
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.32
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.31
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.3
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.3
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.3
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.29
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.29
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.27
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.26
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.24
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.23
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.23
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.22
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.2
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.19
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.19
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.16
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.14
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.11
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.1
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.09
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.08
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.08
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.07
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.06
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.05
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.03
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.03
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.98
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.98
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.97
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.96
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.95
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.91
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.91
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.87
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.85
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.84
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.81
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.8
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.78
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.76
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.76
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.75
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.74
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.73
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.7
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.7
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.66
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.65
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.6
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.59
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.58
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.52
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.5
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.47
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.44
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.41
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.4
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.4
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.35
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.24
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.21
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.2
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.17
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.13
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.03
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.98
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.94
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.84
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.79
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.71
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.59
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.54
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.43
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.42
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.41
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.41
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.34
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.33
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.33
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.25
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.19
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.11
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.07
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.05
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.04
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.02
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.99
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.98
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.96
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.94
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.91
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.84
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.81
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.78
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.75
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.71
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.71
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.68
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.65
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.57
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.46
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.34
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.33
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.26
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.16
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.15
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.12
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.98
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.79
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.59
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.45
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.42
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.29
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.25
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.13
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.07
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.06
3kya_A	496	Putative phosphatase; structural genomics, joint c	94.96
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.81
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.8
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.76
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.7
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.24
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.2
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	94.11
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.1
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	93.94
3ott_A	758	Two-component system sensor histidine kinase; beta	93.87
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	93.58
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	92.65
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	92.06
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	91.65
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	90.69
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	88.86
3ott_A	758	Two-component system sensor histidine kinase; beta	88.16
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	87.27
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	86.69
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	81.04

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.3e-41  Score=283.79  Aligned_cols=259  Identities=13%  Similarity=0.171  Sum_probs=221.4

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .+.+|+||+.|++|++|+.....          ......+.+|...  +++++|++.. ++++.|++|++||+.+++.+.
T Consensus        47 ~~~~l~tgs~D~~v~vW~~~~~~----------~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~  116 (321)
T 3ow8_A           47 NSETVVTGSLDDLVKVWKWRDER----------LDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIK  116 (321)
T ss_dssp             --CEEEEEETTSCEEEEEEETTE----------EEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             CCCEEEEEcCCCCEEEEECCCCC----------eeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE
Confidence            35689999999999999976540          1112235688777  8999999999 999999999999998876542


Q ss_pred             cccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744          102 INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA  180 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~  180 (308)
                       ....+...+..+.|+|++.. ++++.|+.|++|+++++ +....+..|...|.+++|+|++++|++++.|+.|++||++
T Consensus       117 -~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~-~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~  194 (321)
T 3ow8_A          117 -SIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG-KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA  194 (321)
T ss_dssp             -EEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC-SEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             -EEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC-ceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence             22334445788999999977 88999999999999998 6778888999999999999999999999999999999999


Q ss_pred             CCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEE
Q 021744          181 SGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILA  253 (308)
Q Consensus       181 ~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~i  253 (308)
                      +++.+..+. +..++.++  .|++++|++++ |+.|++||+++++.. .+.+|...|.+++|+|+  +|++++.|+.|++
T Consensus       195 ~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~i  274 (321)
T 3ow8_A          195 TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKV  274 (321)
T ss_dssp             TTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence            999999888 66777765  57899999887 999999999998877 78899999999999999  9999999999999


Q ss_pred             EEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          254 WKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      ||+.++    +++.++.+|...|.. +|+|++++|++++ +..|.++.
T Consensus       275 wd~~~~----~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          275 WDVGTR----TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD  318 (321)
T ss_dssp             EETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             EeCCCC----EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            999987    788899999999999 9999999998665 55565554

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.8e-40  Score=290.27  Aligned_cols=256  Identities=15%  Similarity=0.243  Sum_probs=224.2

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      +.++++++.|++|++||..++            .....+.+|...  +++|+|++.+ ++|+.|++|++||+.+++.+. 
T Consensus       120 ~~~l~s~s~Dg~i~vwd~~~~------------~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~-  186 (410)
T 1vyh_C          120 FSVMVSASEDATIKVWDYETG------------DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR-  186 (410)
T ss_dssp             SSEEEEEESSSCEEEEETTTC------------CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE-
T ss_pred             CCEEEEEeCCCeEEEEECCCC------------cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-
Confidence            578999999999999999877            223345678877  8999999999 999999999999998765442 


Q ss_pred             ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744          103 NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~  181 (308)
                      ....|...+.++.|+|++.. ++|+.|+.|++||+.++ +.+..+.+|...|.+++++|++.++++|+.|++|++||+++
T Consensus       187 ~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~  265 (410)
T 1vyh_C          187 TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT  265 (410)
T ss_dssp             CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            34567788999999999876 89999999999999999 78899999999999999999999999999999999999999


Q ss_pred             CeEEEEEe-CCCeeEEEE--cC--------------------CCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEE
Q 021744          182 GQCAGVIN-LGGEVGCMI--SE--------------------GPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMA  236 (308)
Q Consensus       182 ~~~~~~~~-~~~~v~~~~--~~--------------------~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~  236 (308)
                      +++...+. +...+.++.  ++                    +.+|++|+ |+.|++||+++++++ .+.+|...|++++
T Consensus       266 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~  345 (410)
T 1vyh_C          266 KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL  345 (410)
T ss_dssp             CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEE
Confidence            99988887 777777763  32                    56888776 999999999999887 7889999999999


Q ss_pred             EeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          237 VGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       237 ~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      |+|+  +|++|+.|+.|++||+.++    +++..+.+|...|.+ +|+|++.+|++++ +..|.+|.
T Consensus       346 ~~~~g~~l~s~s~D~~i~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~  408 (410)
T 1vyh_C          346 FHSGGKFILSCADDKTLRVWDYKNK----RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  408 (410)
T ss_dssp             ECSSSSCEEEEETTTEEEEECCTTS----CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCC----ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            9998  9999999999999999886    778889999999999 9999999998655 66666654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.4e-40  Score=281.54  Aligned_cols=257  Identities=15%  Similarity=0.210  Sum_probs=217.3

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCc-
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS-  100 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~-  100 (308)
                      .+.++++++.|++|++||..++.            ....+..|...  +++|+|++.+ ++|+.|++|++|++.+.+.. 
T Consensus        66 d~~~l~s~s~Dg~v~iWd~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~  133 (340)
T 1got_B           66 DSRLLLSASQDGKLIIWDSYTTN------------KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV  133 (340)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCC------------EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSC
T ss_pred             CCCEEEEEeCCCcEEEEECCCCC------------cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcc
Confidence            36789999999999999987761            11122345555  8999999999 99999999999999765421 


Q ss_pred             --ccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 021744          101 --NINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (308)
Q Consensus       101 --~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd  178 (308)
                        ......|...+.++.|.+++.+++++.|+.|++||+.++ +.+..+.+|...|.+++|+|+++++++++.|++|++||
T Consensus       134 ~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd  212 (340)
T 1got_B          134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD  212 (340)
T ss_dssp             EEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCC-cEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Confidence              123345667789999999998999999999999999999 78899999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCceee-ee--CCCCCEEEEEEeCC--EEEEEcCCC
Q 021744          179 CASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLS-LS--GPVGQVYAMAVGND--LLFAGTQDG  249 (308)
Q Consensus       179 ~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~-~~--~~~~~v~~~~~~~~--~l~~g~~dg  249 (308)
                      +++++++..+. |...+.++  .|++++|++++ |++|++||+++++... +.  .+...|.+++|+|+  +|++|+.|+
T Consensus       213 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~  292 (340)
T 1got_B          213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF  292 (340)
T ss_dssp             TTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCC
Confidence            99999998887 77778766  47899999877 9999999999988763 32  23357999999999  999999999


Q ss_pred             eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEe
Q 021744          250 AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIG  298 (308)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~  298 (308)
                      .|++||+.+.    +.+..+.+|...|.+ +|+|++.+|++++ +..|.+|
T Consensus       293 ~i~vwd~~~~----~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          293 NCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             EEEEEETTTC----CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             eEEEEEcccC----cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence            9999999886    677888999999999 9999999998665 6566554

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.6e-40  Score=276.42  Aligned_cols=251  Identities=13%  Similarity=0.179  Sum_probs=211.5

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .+.++++++.|++|++||..++            .....+.+|...  +++|+|++++ ++|+.|++|++||+.+++.+.
T Consensus        24 ~~~~l~s~~~dg~v~lWd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~   91 (304)
T 2ynn_A           24 TEPWVLTTLYSGRVELWNYETQ------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV   91 (304)
T ss_dssp             SSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCEEEEEcCCCcEEEEECCCC------------ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEE
Confidence            3678999999999999998876            111223455555  7999999999 999999999999998886543


Q ss_pred             cccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC-CCCEEEEeeCCCcEEEEeC
Q 021744          102 INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDC  179 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~v~~wd~  179 (308)
                       ....|...+..+.|+|++.. ++|+.|+.|++||++++......+.+|...|.+++|+| ++.+|++|+.|++|++||+
T Consensus        92 -~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~  170 (304)
T 2ynn_A           92 -DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL  170 (304)
T ss_dssp             -EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEET
T ss_pred             -EEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence             34567788999999999976 89999999999999987566778899999999999999 5789999999999999999


Q ss_pred             CCCeEEEEEe--CCCeeEEE--E--cCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCC
Q 021744          180 ASGQCAGVIN--LGGEVGCM--I--SEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDG  249 (308)
Q Consensus       180 ~~~~~~~~~~--~~~~v~~~--~--~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg  249 (308)
                      ++.++...+.  +...+..+  .  +++++|++++ |++|++||+++++++ .+.+|...|.+++|+|+  +|++|+.||
T Consensus       171 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg  250 (304)
T 2ynn_A          171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG  250 (304)
T ss_dssp             TCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             CCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCC
Confidence            9887766665  44455544  2  3677888776 999999999999887 88999999999999999  999999999


Q ss_pred             eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCC--eEEEeec
Q 021744          250 AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVT--SLLGSVS  292 (308)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~--~l~~s~s  292 (308)
                      .|++||+.+.    +.+..+..|...+.+ +|+|++.  +++++.+
T Consensus       251 ~i~iWd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~  292 (304)
T 2ynn_A          251 TLKIWNSSTY----KVEKTLNVGLERSWCIATHPTGRKNYIASGFD  292 (304)
T ss_dssp             CEEEEETTTC----CEEEEECCSSSSEEEEEECTTCGGGCEEEEET
T ss_pred             eEEEEECCCC----ceeeeccCCCccEEEEEECCCCCceEEEEecC
Confidence            9999999987    778889999999999 9999875  4565553

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.7e-40  Score=283.59  Aligned_cols=266  Identities=13%  Similarity=0.087  Sum_probs=203.8

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCeeeccCCCcEEEEECCCCCCcccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      |.+|++++ |.++|+||............+ ..........|...  +++|+|++..++|+.||+|+|||+++++.....
T Consensus        42 G~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~  119 (344)
T 4gqb_B           42 GALLLGAS-SLSGRCWAGSLWLFKDPCAAP-NEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVS  119 (344)
T ss_dssp             SCEEEEEE-CCSSSCCCEEEEEESSGGGTT-CGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEE
T ss_pred             CCEEEEEe-CCceEEeeceeeeeccccccC-CcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEe
Confidence            56777776 889999984432000000000 00001111123333  899999975599999999999999888765332


Q ss_pred             ---cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEe
Q 021744          104 ---NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWD  178 (308)
Q Consensus       104 ---~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd  178 (308)
                         ..+|...|.++.|+|++.. ++|+.|+.|++||+.++ +.+..+.+|...|.+++|+|++ .+|++++.|++|++||
T Consensus       120 ~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd  198 (344)
T 4gqb_B          120 KFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ-VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD  198 (344)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             eccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-cEEEEEcCcCCceEEEEecCCCCCceeeecccccccccc
Confidence               3467778999999999976 89999999999999999 8999999999999999999987 4789999999999999


Q ss_pred             CCCCeEEEEEe---CCCeeEEE--Ec-CCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC---EEEEEcC
Q 021744          179 CASGQCAGVIN---LGGEVGCM--IS-EGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQ  247 (308)
Q Consensus       179 ~~~~~~~~~~~---~~~~v~~~--~~-~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~---~l~~g~~  247 (308)
                      +++++++..+.   +...+.++  .+ +++++++|+ |+.|++||+++++++ .+.+|...|++++|+|+   +|++|+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~  278 (344)
T 4gqb_B          199 TRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSE  278 (344)
T ss_dssp             TTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEET
T ss_pred             ccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeC
Confidence            99999888775   33445555  34 456788776 999999999999877 88999999999999997   7899999


Q ss_pred             CCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEe-e-ceEEEEee
Q 021744          248 DGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGS-V-SFIMFIGQ  299 (308)
Q Consensus       248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s-~-s~~i~~~~  299 (308)
                      |++|++||+.++    + +..+.+|...|++ +|+|+++.++++ + +..|.++.
T Consensus       279 D~~i~vwd~~~~----~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~  328 (344)
T 4gqb_B          279 DCSLAVLDSSLS----E-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV  328 (344)
T ss_dssp             TSCEEEECTTCC----E-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             CCeEEEEECCCC----c-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence            999999999885    3 3457899999999 999999876643 3 55555554

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.1e-38  Score=269.04  Aligned_cols=256  Identities=18%  Similarity=0.217  Sum_probs=212.4

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC---
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN---   99 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~---   99 (308)
                      +.+|||++.|++|++||..+++.            ......|...  +++|+|+|.. ++|+.|+++++|++.....   
T Consensus        76 ~~~l~s~s~Dg~v~vWd~~~~~~------------~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~  143 (354)
T 2pbi_B           76 KRRIVSSSQDGKVIVWDSFTTNK------------EHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENM  143 (354)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCE------------EEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCS
T ss_pred             CCEEEEEeCCCeEEEEECCCCCc------------ceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccc
Confidence            57899999999999999876611            1112233333  7999999999 9999999999999964421   


Q ss_pred             --cccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC--CCCEEEEeeCCCcE
Q 021744          100 --SNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS--GSDKLYSGSKDETV  174 (308)
Q Consensus       100 --~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~dg~v  174 (308)
                        .......|...+..+.|++++.. ++++.|+.|++||++++ +.+..+.+|...|.+++|+|  ++++|++|+.|++|
T Consensus       144 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v  222 (354)
T 2pbi_B          144 AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG-QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKA  222 (354)
T ss_dssp             GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCE
T ss_pred             cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeE
Confidence              11223456677899999999865 89999999999999999 78999999999999999987  46899999999999


Q ss_pred             EEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeC--CCCCEEEEEEeCC--EEEEE
Q 021744          175 RVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSG--PVGQVYAMAVGND--LLFAG  245 (308)
Q Consensus       175 ~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~--~~~~v~~~~~~~~--~l~~g  245 (308)
                      ++||+++++++..+. |...+.++  .|++.+|++++ |++|++||+++.+.. .+..  +...+.+++|+|+  +|++|
T Consensus       223 ~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g  302 (354)
T 2pbi_B          223 MVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAG  302 (354)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEE
Confidence            999999999998887 77788776  47889999877 999999999998766 3332  3357899999999  99999


Q ss_pred             cCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEe
Q 021744          246 TQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIG  298 (308)
Q Consensus       246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~  298 (308)
                      +.|+.|++||+.++    +.+..+.+|...|.+ +|+||+++|++++ +..|.+|
T Consensus       303 ~~d~~i~vwd~~~~----~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          303 YNDYTINVWDVLKG----SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             ETTSCEEEEETTTC----SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             ECCCcEEEEECCCC----ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence            99999999999887    667888899999999 9999999998665 6666655

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.2e-38  Score=272.03  Aligned_cols=261  Identities=13%  Similarity=0.086  Sum_probs=203.0

Q ss_pred             CCCceEEecC------CCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCeeeccCCCcEEEEECCC
Q 021744           25 GGGLSTADTR------QKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWGRNNNFNNHSNNYRAGN   96 (308)
Q Consensus        25 ~~~~~~s~s~------d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~~s~~~d~~i~vwd~~~   96 (308)
                      .|.+||++|.      |++|++|+...+...        ........+|...  +++|+|++.+++++.|++|+|||+.+
T Consensus        53 DG~~las~s~d~~~~wd~~v~~~~~~~~~~~--------~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~  124 (357)
T 4g56_B           53 DGALLLAASSLSSRTWGGSIWVFKDPEGAPN--------ESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILE  124 (357)
T ss_dssp             SSCEEEEEECSSSSSCCEEEEEESSCC---C--------GGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC----
T ss_pred             CCCEEEEEcCCCCccccCeEEEEECCCCCcc--------eeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccc
Confidence            3679999998      678999987766110        1112223456655  89999998778888999999999987


Q ss_pred             CCCcccc---cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCC-EEEEeeCC
Q 021744           97 SKNSNIN---NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKD  171 (308)
Q Consensus        97 ~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~d  171 (308)
                      ++.....   ...|...+.++.|+|++.. ++++.|+.|++||++++ +.+..+.+|...|.+++|+|++. ++++++.|
T Consensus       125 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~d  203 (357)
T 4g56_B          125 KESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-AVLKSYNAHSSEVNCVAACPGKDTIFLSCGED  203 (357)
T ss_dssp             ----CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTCSSCEEEEETT
T ss_pred             cceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEccCCCceeeeeccC
Confidence            7654322   2356777999999999976 88999999999999999 88999999999999999999874 78999999


Q ss_pred             CcEEEEeCCCCeEEEEEe---CCCeeEEE--EcC-CCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC---
Q 021744          172 ETVRVWDCASGQCAGVIN---LGGEVGCM--ISE-GPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---  240 (308)
Q Consensus       172 g~v~~wd~~~~~~~~~~~---~~~~v~~~--~~~-~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~---  240 (308)
                      ++|++||+++++++..+.   +...+.++  .|+ +.+|++|+ |+.|++||+++++.. .+.+|...|++++|+|+   
T Consensus       204 g~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~  283 (357)
T 4g56_B          204 GRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSP  283 (357)
T ss_dssp             SCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSC
T ss_pred             CceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCC
Confidence            999999999988776665   44556665  355 56777776 999999999998877 78899999999999987   


Q ss_pred             EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEec-CCCeEEEee-ceEEEEee
Q 021744          241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR-DVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       241 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~-d~~~l~~s~-s~~i~~~~  299 (308)
                      +|++|+.|++|+|||++++    +++.. .+|...|++ +|+| |+.+|++++ +..|.++.
T Consensus       284 ~lasgs~D~~i~iwd~~~~----~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~  340 (357)
T 4g56_B          284 FLASISEDCTVAVLDADFS----EVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH  340 (357)
T ss_dssp             CEEEEETTSCEEEECTTSC----EEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             EEEEEeCCCEEEEEECCCC----cEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence            7999999999999999986    54444 479999999 9998 788888655 55555554

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=8.1e-38  Score=270.81  Aligned_cols=258  Identities=17%  Similarity=0.230  Sum_probs=207.4

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCC---
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSK---   98 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~---   98 (308)
                      .+.+|+|++.|++|++||..++.            ....+.+|...  +++|+|++.+ ++|+.|++|++||+.+..   
T Consensus        77 ~~~~l~s~s~D~~v~iWd~~~~~------------~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~  144 (380)
T 3iz6_a           77 EKNWIVSASQDGRLIVWNALTSQ------------KTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD  144 (380)
T ss_dssp             TSSCEEEEETTSEEEEEETTTTE------------EEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCc------------cceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc
Confidence            36789999999999999987761            11223455555  7999999999 999999999999996532   


Q ss_pred             ---CcccccceeeeeeeeeeeecCC--ceEEeeCCCeEEEEEcCCCceeeeEe-----eCcccceEEEEEeC-CCCEEEE
Q 021744           99 ---NSNINNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQL-----EGHQKVVSGITLPS-GSDKLYS  167 (308)
Q Consensus        99 ---~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~l~s  167 (308)
                         .......+|...+..+.|.|++  .+++|+.|+.|++||+.++ +.+..+     .+|...|.+++|++ ++.++++
T Consensus       145 ~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  223 (380)
T 3iz6_a          145 GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG-QRISIFGSEFPSGHTADVLSLSINSLNANMFIS  223 (380)
T ss_dssp             CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC-CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEE
T ss_pred             CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC-cEEEEeecccCCCCccCeEEEEeecCCCCEEEE
Confidence               1222346777788999999875  3599999999999999998 666666     67999999999987 7899999


Q ss_pred             eeCCCcEEEEeCC-CCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCC-------CCCEEE
Q 021744          168 GSKDETVRVWDCA-SGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGP-------VGQVYA  234 (308)
Q Consensus       168 ~s~dg~v~~wd~~-~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~-------~~~v~~  234 (308)
                      |+.|++|++||++ ..+.+..+. |...+.++  .|++++|++++ |++|++||+++++.. .+..+       ...|++
T Consensus       224 gs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~  303 (380)
T 3iz6_a          224 GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTS  303 (380)
T ss_dssp             EETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSE
T ss_pred             EECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEE
Confidence            9999999999998 456777776 77778776  57899999887 999999999999876 34332       234899


Q ss_pred             EEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceec----cccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          235 MAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASL----KVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       235 ~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      ++|+|+  +|++|+.||.|++||+..+    +.+..+    .+|...|++ +|+|||.+|++++ +..|.+|.
T Consensus       304 ~~~s~~g~~l~~g~~dg~i~vwd~~~~----~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~  372 (380)
T 3iz6_a          304 VAFSISGRLLFAGYSNGDCYVWDTLLA----EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA  372 (380)
T ss_dssp             EEECSSSSEEEEECTTSCEEEEETTTC----CEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             EEECCCCCEEEEEECCCCEEEEECCCC----ceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence            999999  9999999999999999886    444444    579999999 9999999998665 44444443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.4e-36  Score=255.80  Aligned_cols=257  Identities=18%  Similarity=0.282  Sum_probs=212.1

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .+.++++++.|++|++|+...+.            ....+.+|...  +++|+|++++ ++++.|++|++||+.+++...
T Consensus        34 ~~~~l~s~~~dg~i~iw~~~~~~------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  101 (312)
T 4ery_A           34 NGEWLASSSADKLIKIWGAYDGK------------FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK  101 (312)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCC------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCEEEEeeCCCeEEEEeCCCcc------------cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEE
Confidence            36789999999999999987661            11223466666  8999999999 999999999999998776542


Q ss_pred             cccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744          102 INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA  180 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~  180 (308)
                       ....|...+.++.|+|++.. ++++.|+.|++||++++ +.+..+..|..+|.+++|+|++++|++++.|+.|++||++
T Consensus       102 -~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~  179 (312)
T 4ery_A          102 -TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA  179 (312)
T ss_dssp             -EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             -EEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence             34556677999999999876 88999999999999998 7888999999999999999999999999999999999999


Q ss_pred             CCeEEEEEe--CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEE--EEEEe-CC--EEEEEcCCC
Q 021744          181 SGQCAGVIN--LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVY--AMAVG-ND--LLFAGTQDG  249 (308)
Q Consensus       181 ~~~~~~~~~--~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~--~~~~~-~~--~l~~g~~dg  249 (308)
                      +++.+..+.  +...+.++  .+++++|++++ |+.|++||+++++.. .+.+|.....  ...++ ++  +|++|+.||
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg  259 (312)
T 4ery_A          180 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN  259 (312)
T ss_dssp             TCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTS
T ss_pred             CCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCC
Confidence            999888775  34455544  57889998776 999999999999877 6667765432  23344 33  899999999


Q ss_pred             eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee---ceEEEEee
Q 021744          250 AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV---SFIMFIGQ  299 (308)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~---s~~i~~~~  299 (308)
                      .|++||+.++    +.+..+.+|...|.. +|+|++.++++++   +..|.+|.
T Consensus       260 ~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~  309 (312)
T 4ery_A          260 LVYIWNLQTK----EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK  309 (312)
T ss_dssp             CEEEEETTTC----CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred             EEEEEECCCc----hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence            9999999987    778889999999999 9999999998654   55555554

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.9e-36  Score=253.21  Aligned_cols=232  Identities=14%  Similarity=0.177  Sum_probs=196.2

Q ss_pred             CCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcC
Q 021744           62 PAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVG  137 (308)
Q Consensus        62 ~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~  137 (308)
                      ..+.+|...  +++|+|++++ ++++.|++|++||+++++.+. ....|...+..+.|++++.. ++|+.|+.|++||+.
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~   85 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR-SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE-EeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence            345678777  8999999999 999999999999998775442 33456667899999999976 899999999999999


Q ss_pred             CCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC-eEEEEEe-CCCeeEEEE--c-CCCEEEEEc-CCc
Q 021744          138 DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG-QCAGVIN-LGGEVGCMI--S-EGPWIFIGV-TNF  211 (308)
Q Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~-~~~~~~~-~~~~v~~~~--~-~~~~l~~~~-d~~  211 (308)
                      ++ +.+..+.+|.+.|.+++|+|++++|++|+.|++|++||++++ .....+. |...+.++.  | ++.+|++|+ |++
T Consensus        86 ~~-~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~  164 (304)
T 2ynn_A           86 TG-EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT  164 (304)
T ss_dssp             TC-CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred             CC-cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence            99 788899999999999999999999999999999999999987 4445555 777788773  4 467888776 999


Q ss_pred             EEEEEcCCCcee-e-eeCCCCCEEEEEEeC--C--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCC
Q 021744          212 VKAWNTQTNTDL-S-LSGPVGQVYAMAVGN--D--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDV  284 (308)
Q Consensus       212 i~~wd~~~~~~~-~-~~~~~~~v~~~~~~~--~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~  284 (308)
                      |++||+++.... . ...|...+..+.++|  +  +|++|+.|+.|++||++++    +++.++.+|...|.+ +|+|++
T Consensus       165 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~----~~~~~~~~h~~~v~~~~~~p~~  240 (304)
T 2ynn_A          165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK----SCVATLEGHMSNVSFAVFHPTL  240 (304)
T ss_dssp             EEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECSSS
T ss_pred             EEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC----ccceeeCCCCCCEEEEEECCCC
Confidence            999999887655 3 345668899999987  4  8999999999999999987    788899999999999 999999


Q ss_pred             CeEEEee-ceEEEEee
Q 021744          285 TSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       285 ~~l~~s~-s~~i~~~~  299 (308)
                      .+|++++ +..|.+|.
T Consensus       241 ~~l~s~s~Dg~i~iWd  256 (304)
T 2ynn_A          241 PIIISGSEDGTLKIWN  256 (304)
T ss_dssp             SEEEEEETTSCEEEEE
T ss_pred             CEEEEEcCCCeEEEEE
Confidence            9888665 55555544

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-36  Score=257.62  Aligned_cols=263  Identities=16%  Similarity=0.119  Sum_probs=195.9

Q ss_pred             ceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC-----
Q 021744           28 LSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN-----   99 (308)
Q Consensus        28 ~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~-----   99 (308)
                      +||+++.|++|++|+...+..   ..+.     .....+|...  +++|+|++++ ++|+.|++|+|||++....     
T Consensus        26 ~las~~~D~~i~lw~~~~~~~---~~~~-----~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~   97 (330)
T 2hes_X           26 ILATGSTDRKIKLVSVKYDDF---TLID-----VLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEM   97 (330)
T ss_dssp             EEEEEESSSCEEEEECSSSCC---EEEE-----EECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCC
T ss_pred             EEEEEcCCCEEEEEEecCCCe---EEEE-----EEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccc
Confidence            899999999999999876410   0000     0001237666  8999999999 9999999999999954321     


Q ss_pred             -cccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCC---ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcE
Q 021744          100 -SNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDG---FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETV  174 (308)
Q Consensus       100 -~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v  174 (308)
                       .......|...+..+.|+|++.. ++++.|+.|++||+...   .+.+..+.+|...|.+++|+|++.+|++++.|++|
T Consensus        98 ~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i  177 (330)
T 2hes_X           98 DLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTV  177 (330)
T ss_dssp             EEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred             eeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeE
Confidence             11234567788999999999976 89999999999999532   14577889999999999999999999999999999


Q ss_pred             EEEeCCCC--eEEEEEe-CCCeeEEE--EcC--CCEEEEEc-CCcEEEEEcCCC--------cee-eeeC-CCCCEEEEE
Q 021744          175 RVWDCASG--QCAGVIN-LGGEVGCM--ISE--GPWIFIGV-TNFVKAWNTQTN--------TDL-SLSG-PVGQVYAMA  236 (308)
Q Consensus       175 ~~wd~~~~--~~~~~~~-~~~~v~~~--~~~--~~~l~~~~-d~~i~~wd~~~~--------~~~-~~~~-~~~~v~~~~  236 (308)
                      ++||+.++  +++..+. |...+.++  .++  +.+|++++ |++|++||++++        ... .+.. |...|++++
T Consensus       178 ~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  257 (330)
T 2hes_X          178 RIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVA  257 (330)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEE
T ss_pred             EEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEE
Confidence            99999876  5667776 77788776  354  56788766 999999998764        222 3444 889999999


Q ss_pred             EeCC-EEEEEcCCCeEEEEEcCCCCcccccc-eeccccCC-CeEE-EEec--CCCeEEEee-ceEEEEeec
Q 021744          237 VGND-LLFAGTQDGAILAWKFNVTTNCFEPA-ASLKVHTD-SNRA-HFSR--DVTSLLGSV-SFIMFIGQN  300 (308)
Q Consensus       237 ~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~-~v~~-~~s~--d~~~l~~s~-s~~i~~~~~  300 (308)
                      |+++ +|++++.||.|++||..++..  +.+ ..+..|.. .+.+ +|+|  ++++|++++ +..|.++.-
T Consensus       258 ~s~~~~l~s~~~dg~v~iw~~~~~~~--~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~  326 (330)
T 2hes_X          258 WGFNGLIASVGADGVLAVYEEVDGEW--KVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL  326 (330)
T ss_dssp             ECTTSCEEEEETTSCEEEEEEETTEE--EEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred             EcCCCEEEEEeCCCEEEEEEcCCCce--EEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence            9988 999999999999999987521  222 23457776 8888 9999  688888655 667766653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.3e-36  Score=277.15  Aligned_cols=257  Identities=12%  Similarity=0.159  Sum_probs=203.7

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      .+|++++.|++|++||...+            .....+.+|...  +++|+|+|++ |+|+.|++|++||+.+++.....
T Consensus       161 ~~l~s~s~D~~v~lwd~~~~------------~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~  228 (611)
T 1nr0_A          161 FRIISGSDDNTVAIFEGPPF------------KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF  228 (611)
T ss_dssp             CEEEEEETTSCEEEEETTTB------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEC
T ss_pred             eEEEEEeCCCeEEEEECCCC------------eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeee
Confidence            36999999999999997654            112235678777  8999999999 99999999999999877654332


Q ss_pred             cc------eeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceee---------------------------------
Q 021744          104 NR------AVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLL---------------------------------  143 (308)
Q Consensus       104 ~~------~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~---------------------------------  143 (308)
                      ..      .|...+..+.|+|++.. ++++.|++|++||+.++ +.+                                 
T Consensus       229 ~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~  307 (611)
T 1nr0_A          229 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN  307 (611)
T ss_dssp             BCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEE
T ss_pred             ccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEE
Confidence            22      67888999999999976 89999999999999876 332                                 


Q ss_pred             ----------eEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEE-------------------------
Q 021744          144 ----------TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI-------------------------  188 (308)
Q Consensus       144 ----------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~-------------------------  188 (308)
                                ..+.+|...|.+++|+|++++|++++.|++|++||+.+++....+                         
T Consensus       308 ~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d  387 (611)
T 1nr0_A          308 FVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWD  387 (611)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETT
T ss_pred             EEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcC
Confidence                      344689999999999999999999999999999999876543221                         


Q ss_pred             ----------------------------------------------------------eCCCeeEEE--EcCCCEEEEEc
Q 021744          189 ----------------------------------------------------------NLGGEVGCM--ISEGPWIFIGV  208 (308)
Q Consensus       189 ----------------------------------------------------------~~~~~v~~~--~~~~~~l~~~~  208 (308)
                                                                                .+...+.++  .|++++|++|+
T Consensus       388 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs  467 (611)
T 1nr0_A          388 DHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGG  467 (611)
T ss_dssp             TEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEE
T ss_pred             CceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeC
Confidence                                                                      001122333  57899999877


Q ss_pred             -CCcEEEEEcCCCcee--eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCccccccee--ccccCCCeEE-EE
Q 021744          209 -TNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAAS--LKVHTDSNRA-HF  280 (308)
Q Consensus       209 -d~~i~~wd~~~~~~~--~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~v~~-~~  280 (308)
                       |++|++||+.+++..  ...+|...|++++|+|+  +|++++.|+.|++||+.+..   +.+..  +..|...|.+ +|
T Consensus       468 ~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~---~~~~~~~~~~H~~~V~~v~f  544 (611)
T 1nr0_A          468 QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF---ELAHTNSWTFHTAKVACVSW  544 (611)
T ss_dssp             TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT---EESCCCCCCCCSSCEEEEEE
T ss_pred             CCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC---ceeeeeeeeecccceeEEEE
Confidence             999999999887543  33679999999999999  99999999999999998731   33333  3459999999 99


Q ss_pred             ecCCCeEEEee-ceEEEEee
Q 021744          281 SRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       281 s~d~~~l~~s~-s~~i~~~~  299 (308)
                      +|||++|++++ +..|.+|.
T Consensus       545 spdg~~lasgs~D~~v~lW~  564 (611)
T 1nr0_A          545 SPDNVRLATGSLDNSVIVWN  564 (611)
T ss_dssp             CTTSSEEEEEETTSCEEEEE
T ss_pred             CCCCCEEEEEECCCcEEEEE
Confidence            99999999665 55555554

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.5e-36  Score=263.12  Aligned_cols=231  Identities=15%  Similarity=0.176  Sum_probs=204.9

Q ss_pred             Cccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCC
Q 021744           63 AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGD  138 (308)
Q Consensus        63 ~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~  138 (308)
                      .+.+|...  +++|+|++.+ ++|+.|++|+|||+.+++... ...+|...+.++.|++++.. ++|+.|+.|++||+.+
T Consensus       103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~-~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~  181 (410)
T 1vyh_C          103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER-TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG  181 (410)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE-EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE-EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence            45688887  8999999999 999999999999998876543 44567888999999999976 8999999999999998


Q ss_pred             CceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEE
Q 021744          139 GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKA  214 (308)
Q Consensus       139 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~  214 (308)
                      . +.+..+.+|...|.+++|+|++.+|++++.|++|++||+++++++..+. |...+.++  .+++.++++++ |+.|++
T Consensus       182 ~-~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~v  260 (410)
T 1vyh_C          182 F-ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV  260 (410)
T ss_dssp             S-CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             C-ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEE
Confidence            8 7889999999999999999999999999999999999999999998888 66777766  46788999876 999999


Q ss_pred             EEcCCCcee-eeeCCCCCEEEEEEeC---------------------C-EEEEEcCCCeEEEEEcCCCCcccccceeccc
Q 021744          215 WNTQTNTDL-SLSGPVGQVYAMAVGN---------------------D-LLFAGTQDGAILAWKFNVTTNCFEPAASLKV  271 (308)
Q Consensus       215 wd~~~~~~~-~~~~~~~~v~~~~~~~---------------------~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  271 (308)
                      ||+++++.. .+.+|...|.+++|+|                     . +|++|+.|+.|++||++++    +++..+.+
T Consensus       261 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~----~~~~~~~~  336 (410)
T 1vyh_C          261 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG----MCLMTLVG  336 (410)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT----EEEEEEEC
T ss_pred             EECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC----ceEEEEEC
Confidence            999999877 7889999999999998                     3 7999999999999999987    77888999


Q ss_pred             cCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          272 HTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       272 ~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      |...|.+ +|+|++++|++++ +..|.++.
T Consensus       337 h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd  366 (410)
T 1vyh_C          337 HDNWVRGVLFHSGGKFILSCADDKTLRVWD  366 (410)
T ss_dssp             CSSCEEEEEECSSSSCEEEEETTTEEEEEC
T ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            9999999 9999999998666 55555554

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.6e-36  Score=253.72  Aligned_cols=260  Identities=14%  Similarity=0.173  Sum_probs=206.0

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .+.+++|++.|++|++|+.......   +    ......+.+|...  +++|+|++.+ ++|+.|++|++||+.+++...
T Consensus        29 ~~~~l~s~s~D~~v~~W~~~~~~~~---~----~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~  101 (319)
T 3frx_A           29 QPNLLLSASRDKTLISWKLTGDDQK---F----GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ  101 (319)
T ss_dssp             CTTEEEEEETTSEEEEEEEEEETTE---E----EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             CccEEEEecCCccEEEecCCCCCcc---c----cccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeE
Confidence            4578999999999999997643100   0    0011235678777  8999999999 999999999999998886542


Q ss_pred             cccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCC------CCEEEEeeCCCcE
Q 021744          102 INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG------SDKLYSGSKDETV  174 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~------~~~l~s~s~dg~v  174 (308)
                       ....|...+..+.|++++.. ++|+.|+.|++||++.  +.+..+.+|...|.++++.|.      +..+++++.|++|
T Consensus       102 -~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i  178 (319)
T 3frx_A          102 -RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV  178 (319)
T ss_dssp             -EEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCE
T ss_pred             -EEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEE
Confidence             34567778999999999876 8999999999999975  457788999999999999985      4489999999999


Q ss_pred             EEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCC
Q 021744          175 RVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQD  248 (308)
Q Consensus       175 ~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~d  248 (308)
                      ++||+++.+....+. |...+.++  .|++++|++++ |+.|++||+++++.+....+...|.+++|+|+  ++++++ +
T Consensus       179 ~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~-~  257 (319)
T 3frx_A          179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT-A  257 (319)
T ss_dssp             EEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEE-T
T ss_pred             EEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEc-C
Confidence            999999999888877 77788776  57899999876 99999999999988733334578999999999  666665 4


Q ss_pred             CeEEEEEcCCCCcccccceec--------cccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          249 GAILAWKFNVTTNCFEPAASL--------KVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       249 g~i~iwd~~~~~~~~~~~~~~--------~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      +.+++|++...    ..+..+        ..|...+.+ +|+|||++|++++ +..|.+|.
T Consensus       258 ~~i~v~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd  314 (319)
T 3frx_A          258 TGIKVFSLDPQ----YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ  314 (319)
T ss_dssp             TEEEEEEETTE----EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCcEEEEeCcC----eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence            56999999875    333322        235667778 9999999999665 55555543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.4e-36  Score=256.03  Aligned_cols=266  Identities=13%  Similarity=0.132  Sum_probs=205.0

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC-c
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN-S  100 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~-~  100 (308)
                      .+.+||+++.|++|++|+...+.. .+        ......+|...  +++|+|++++ ++|+.|++|++||+..++. .
T Consensus        27 ~g~~las~~~D~~i~iw~~~~~~~-~~--------~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~   97 (345)
T 3fm0_A           27 AGTLLASCGGDRRIRIWGTEGDSW-IC--------KSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC   97 (345)
T ss_dssp             TSSCEEEEETTSCEEEEEEETTEE-EE--------EEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEE
T ss_pred             CCCEEEEEcCCCeEEEEEcCCCcc-ee--------eeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEE
Confidence            367899999999999999876510 00        01112467776  8999999999 9999999999999976642 2


Q ss_pred             ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCc--eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEE
Q 021744          101 NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGF--KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW  177 (308)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~w  177 (308)
                      ......|...+..+.|+|++.. ++++.|+.|++||+.++.  +.+..+.+|...|.+++|+|++++|++++.|++|++|
T Consensus        98 ~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w  177 (345)
T 3fm0_A           98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY  177 (345)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEE
T ss_pred             EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEE
Confidence            2344567788999999999976 899999999999998652  3466788999999999999999999999999999999


Q ss_pred             eCCCCeEE--EEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCc---------------ee-eeeC-CCCCEEE
Q 021744          178 DCASGQCA--GVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNT---------------DL-SLSG-PVGQVYA  234 (308)
Q Consensus       178 d~~~~~~~--~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~---------------~~-~~~~-~~~~v~~  234 (308)
                      |+++++..  ..+. |...+.++  .+++++|++++ |++|++||.....               ++ .+.+ |...|++
T Consensus       178 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  257 (345)
T 3fm0_A          178 REEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYD  257 (345)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEE
T ss_pred             EecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEE
Confidence            99887643  4554 77778776  47899999876 9999999974321               11 2333 8889999


Q ss_pred             EEEeCC--EEEEEcCCCeEEEEEcCCCCcccccc-----eeccccCCCeEE-EEecCCC-eEEEee-ceEEEEee
Q 021744          235 MAVGND--LLFAGTQDGAILAWKFNVTTNCFEPA-----ASLKVHTDSNRA-HFSRDVT-SLLGSV-SFIMFIGQ  299 (308)
Q Consensus       235 ~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~v~~-~~s~d~~-~l~~s~-s~~i~~~~  299 (308)
                      ++|+|+  .|++++.|+.|++|+.........+.     ....+|...|++ +|+|++. +|++++ +..|.+|.
T Consensus       258 v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~  332 (345)
T 3fm0_A          258 IAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK  332 (345)
T ss_dssp             EEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             EEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence            999998  99999999999999987653211111     223579999999 9999985 666544 44444444

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.5e-35  Score=250.12  Aligned_cols=264  Identities=10%  Similarity=0.060  Sum_probs=201.2

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .+.+||||+.|++|++||......... +    ......+.+|...  +++|+|++.+ ++|+.|++|++||+.+++...
T Consensus        38 d~~~l~sgs~D~~v~iWd~~~~~~~~~-~----~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~  112 (343)
T 2xzm_R           38 DSPVLISGSRDKTVMIWKLYEEEQNGY-F----GIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK  112 (343)
T ss_dssp             CCCEEEEEETTSCEEEEEECSSCCSSB-S----EEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE
T ss_pred             CCCEEEEEcCCCEEEEEECCcCCcccc-c----ccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE
Confidence            467999999999999999875411000 0    0011235678777  8999999999 999999999999998876542


Q ss_pred             cccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEe---eCcccceEEEEEeCCC----------CEEEE
Q 021744          102 INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQL---EGHQKVVSGITLPSGS----------DKLYS  167 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~---~~h~~~v~~~~~~~~~----------~~l~s  167 (308)
                       ....|...+..+.|+|++.. ++++.|+.|++||+... . ...+   .+|...|.+++|+|++          .++++
T Consensus       113 -~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s  189 (343)
T 2xzm_R          113 -RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-C-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFAS  189 (343)
T ss_dssp             -EEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-E-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEE
T ss_pred             -EEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-c-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEE
Confidence             34567778999999999976 88999999999999854 2 2223   3789999999999986          78999


Q ss_pred             eeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCC-ceeeeeCCCCCEEEEEEeCC-E
Q 021744          168 GSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTN-TDLSLSGPVGQVYAMAVGND-L  241 (308)
Q Consensus       168 ~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~-~~~~~~~~~~~v~~~~~~~~-~  241 (308)
                      ++.|++|++||. ..+....+. |...+.++  .+++++|++++ |+.|++||++.. .......+...|.+++|+|+ .
T Consensus       190 ~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~  268 (343)
T 2xzm_R          190 VGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQ  268 (343)
T ss_dssp             EETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSC
T ss_pred             EcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCC
Confidence            999999999994 466666665 77778776  47899999877 999999999544 33333345667999999999 4


Q ss_pred             EEEEcCCCeEEEEEcCCCCcccccceec-----------cccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          242 LFAGTQDGAILAWKFNVTTNCFEPAASL-----------KVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       242 l~~g~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      +++++.|+.|++||+.++..  ..+..+           .+|...+.+ +|+|+|++|++++ +..|.++.
T Consensus       269 ~la~~~d~~v~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~  337 (343)
T 2xzm_R          269 WVAVGTDQGVKIFNLMTQSK--APVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS  337 (343)
T ss_dssp             EEEEEESSCEEEEESSSCCS--CSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred             EEEEECCCCEEEEEeCCCCC--CceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence            45566788999999987632  111122           267788998 9999999998665 66665554

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.1e-36  Score=256.44  Aligned_cols=224  Identities=8%  Similarity=-0.009  Sum_probs=183.8

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      ...+++++.|++|++||..+++.   ..     .......+|...  +++|+|+|++ ++|+.|++|++||+++++.+. 
T Consensus        93 d~~l~~~s~dg~v~lWd~~~~~~---~~-----~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~-  163 (344)
T 4gqb_B           93 ERGILVASDSGAVELWELDENET---LI-----VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS-  163 (344)
T ss_dssp             TTEEEEEETTSEEEEEEECTTSS---CE-----EEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-
T ss_pred             CCeEEEEECCCEEEEEeccCCCc---ee-----EeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE-
Confidence            35799999999999999987611   00     011233478877  8999999999 999999999999998876543 


Q ss_pred             ccceeeeeeeeeeeecCCc--eEEeeCCCeEEEEEcCCCceeeeEee--CcccceEEEEEeCC-CCEEEEeeCCCcEEEE
Q 021744          103 NNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLE--GHQKVVSGITLPSG-SDKLYSGSKDETVRVW  177 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~iwd~~~~~~~~~~~~--~h~~~v~~~~~~~~-~~~l~s~s~dg~v~~w  177 (308)
                      ...+|...+.++.|++++.  +++++.|+.|++||++++ +....+.  .|...+.+++|+|+ +.+|++|+.|++|++|
T Consensus       164 ~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~w  242 (344)
T 4gqb_B          164 SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP-KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV  242 (344)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS-SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred             EEcCcCCceEEEEecCCCCCceeeecccccccccccccc-ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEE
Confidence            4456888899999999884  388999999999999988 5666553  45667999999985 5678999999999999


Q ss_pred             eCCCCeEEEEEe-CCCeeEEE--EcCC-CEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC---EEEEEcCCC
Q 021744          178 DCASGQCAGVIN-LGGEVGCM--ISEG-PWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDG  249 (308)
Q Consensus       178 d~~~~~~~~~~~-~~~~v~~~--~~~~-~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg  249 (308)
                      |+++++++..+. |...+.++  .+++ ++|++++ |++|++||++++++..+.+|.+.|++++|+|+   +|++++.|+
T Consensus       243 d~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~  322 (344)
T 4gqb_B          243 DTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDH  322 (344)
T ss_dssp             ESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCC
Confidence            999999999888 77888876  3666 5777766 99999999999998889999999999999997   788999999


Q ss_pred             eEEEEEcCCC
Q 021744          250 AILAWKFNVT  259 (308)
Q Consensus       250 ~i~iwd~~~~  259 (308)
                      +|++|++.+.
T Consensus       323 ~v~~w~v~~~  332 (344)
T 4gqb_B          323 QVVHHVVPTE  332 (344)
T ss_dssp             CEEEEECCC-
T ss_pred             eEEEEECCCC
Confidence            9999999874

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.3e-35  Score=249.66  Aligned_cols=231  Identities=14%  Similarity=0.184  Sum_probs=197.5

Q ss_pred             ccccccc--eeEEecC----CCe-eeccCCCcEEEEECCCCCCc-ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEE
Q 021744           64 ATANGAA--AKRFANN----TWG-RNNNFNNHSNNYRAGNSKNS-NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSW  134 (308)
Q Consensus        64 ~~gh~~~--~i~~s~~----g~~-~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iw  134 (308)
                      ..+|...  +++|+|+    +.+ ++|+.|++|+|||+..++.. .....+|...+.++.+++++.. ++++.|+.|++|
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lW  107 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLW  107 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            3478877  8999875    556 99999999999999765432 2234677788999999999876 899999999999


Q ss_pred             EcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CC
Q 021744          135 TVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TN  210 (308)
Q Consensus       135 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~  210 (308)
                      |+.++ +.+..+..|...+.+++|+|++++|++++.|+.|++||+++++....+. +...+.++  .|++++|++++ |+
T Consensus       108 d~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg  186 (321)
T 3ow8_A          108 DLENG-KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG  186 (321)
T ss_dssp             ETTTT-EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ECCCC-CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCC
Confidence            99999 7888999999999999999999999999999999999999999888877 55566655  58899999877 99


Q ss_pred             cEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCe
Q 021744          211 FVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTS  286 (308)
Q Consensus       211 ~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~  286 (308)
                      .|++||+++++.+ .+.+|..+|.+++|+|+  +|++|+.|+.|++||++++    +.+..+.+|...|.+ +|+|++++
T Consensus       187 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~sp~~~~  262 (321)
T 3ow8_A          187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA----NLAGTLSGHASWVLNVAFCPDDTH  262 (321)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSE
T ss_pred             eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc----ceeEEEcCCCCceEEEEECCCCCE
Confidence            9999999999887 78899999999999999  9999999999999999986    677889999999999 99999999


Q ss_pred             EEEee-ceEEEEee
Q 021744          287 LLGSV-SFIMFIGQ  299 (308)
Q Consensus       287 l~~s~-s~~i~~~~  299 (308)
                      |++++ +..|.++.
T Consensus       263 l~s~s~D~~v~iwd  276 (321)
T 3ow8_A          263 FVSSSSDKSVKVWD  276 (321)
T ss_dssp             EEEEETTSCEEEEE
T ss_pred             EEEEeCCCcEEEEe
Confidence            98666 44444443

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.1e-35  Score=270.71  Aligned_cols=258  Identities=10%  Similarity=0.060  Sum_probs=208.0

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCc-c
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS-N  101 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~-~  101 (308)
                      |.+||+++ +++|++|+...+            .....+.+|...  +++|+|+|.+ |+|+.|++|+|||+.+++.. .
T Consensus        30 g~~l~~~~-~~~v~l~~~~~~------------~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~   96 (611)
T 1nr0_A           30 GDKIQYCN-GTSVYTVPVGSL------------TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK   96 (611)
T ss_dssp             SSEEEEEE-TTEEEEEETTCS------------SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred             CCEEEeCC-CCEEEEecCCCc------------ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceee
Confidence            56888887 579999998765            233446688887  8999999999 99999999999999755432 2


Q ss_pred             cccceeeeeeeeeeeecCCce-EEeeCC----CeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCC-EEEEeeCCCcEE
Q 021744          102 INNRAVIKTDILCRNWVQGNC-MYGEKC----KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVR  175 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~-~~g~~d----~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~v~  175 (308)
                      .....|...+..++|+|++.. ++++.+    +.|++||.  + +....+.+|...|.+++|+|++. .|++++.|++|+
T Consensus        97 ~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~-~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~  173 (611)
T 1nr0_A           97 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--G-TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA  173 (611)
T ss_dssp             EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--C-CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred             EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--C-CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEE
Confidence            234567778999999999976 555543    47888874  4 45678899999999999999986 599999999999


Q ss_pred             EEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eee-------CCCCCEEEEEEeCC--E
Q 021744          176 VWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLS-------GPVGQVYAMAVGND--L  241 (308)
Q Consensus       176 ~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~-------~~~~~v~~~~~~~~--~  241 (308)
                      +||.++++++..+. |...+.++  .|++++|++++ |++|++||+.+++.. .+.       +|...|.+++|+|+  +
T Consensus       174 lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~  253 (611)
T 1nr0_A          174 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK  253 (611)
T ss_dssp             EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE
T ss_pred             EEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCE
Confidence            99999999888887 77788776  57899999876 999999999998876 442       79999999999999  9


Q ss_pred             EEEEcCCCeEEEEEcCCCCccc---------------------------------------ccceeccccCCCeEE-EEe
Q 021744          242 LFAGTQDGAILAWKFNVTTNCF---------------------------------------EPAASLKVHTDSNRA-HFS  281 (308)
Q Consensus       242 l~~g~~dg~i~iwd~~~~~~~~---------------------------------------~~~~~~~~~~~~v~~-~~s  281 (308)
                      |++++.|++|++||+.+++...                                       ++...+.+|...|.+ +|+
T Consensus       254 l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s  333 (611)
T 1nr0_A          254 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS  333 (611)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             EEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe
Confidence            9999999999999998753100                                       112344579999999 999


Q ss_pred             cCCCeEEEee-ceEEEEee
Q 021744          282 RDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       282 ~d~~~l~~s~-s~~i~~~~  299 (308)
                      ||+++|++++ +..|.++.
T Consensus       334 pdg~~l~s~s~D~~v~~Wd  352 (611)
T 1nr0_A          334 ADGKTLFSADAEGHINSWD  352 (611)
T ss_dssp             TTSSEEEEEETTSCEEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEE
Confidence            9999999665 55555554

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.5e-34  Score=242.76  Aligned_cols=260  Identities=12%  Similarity=0.123  Sum_probs=212.2

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .+.++++++ |+.|++|+......... +      ......+|...  +++|+|++++ ++++.|++|++||+.+++...
T Consensus        62 ~~~~l~~~~-dg~i~iw~~~~~~~~~~-~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  133 (337)
T 1gxr_A           62 PTRHVYTGG-KGCVKVWDISHPGNKSP-V------SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI  133 (337)
T ss_dssp             SSSEEEEEC-BSEEEEEETTSTTCCSC-S------EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EE
T ss_pred             CCcEEEEcC-CCeEEEEECCCCCceee-e------ecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcce
Confidence            367888888 99999999887511000 0      00001145555  8999999999 999999999999998775321


Q ss_pred             -cccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744          102 -INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC  179 (308)
Q Consensus       102 -~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~  179 (308)
                       .....+...+..+.+++++.. ++++.|+.|++||++++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus       134 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~  212 (337)
T 1gxr_A          134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL  212 (337)
T ss_dssp             EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEEC
Confidence             233445556889999999866 88999999999999998 788899999999999999999999999999999999999


Q ss_pred             CCCeEEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEE
Q 021744          180 ASGQCAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAW  254 (308)
Q Consensus       180 ~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iw  254 (308)
                      ++++.+..+.+...+.++  .++++++++++ ++.|++||+++.+...+..|...+.+++|+|+  +|++++.||.|++|
T Consensus       213 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  292 (337)
T 1gxr_A          213 REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW  292 (337)
T ss_dssp             TTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEE
Confidence            999999999888877766  47889998776 89999999999988888899999999999998  99999999999999


Q ss_pred             EcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEe
Q 021744          255 KFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIG  298 (308)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~  298 (308)
                      |+.++    +.+. ...|...+.+ +|+|++++|++++ +..|.++
T Consensus       293 ~~~~~----~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  333 (337)
T 1gxr_A          293 RTPYG----ASIF-QSKESSSVLSCDISVDDKYIVTGSGDKKATVY  333 (337)
T ss_dssp             ETTTC----CEEE-EEECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             ECCCC----eEEE-EecCCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence            99986    3333 3457888988 9999999988665 4444443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=5.4e-35  Score=265.93  Aligned_cols=251  Identities=18%  Similarity=0.244  Sum_probs=208.1

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .+..+++++.|++|++|+....             ....+.+|...  +++|+|++.. ++++.|++|++||.. ++.+ 
T Consensus       314 ~~~~l~t~~~d~~i~~w~~~~~-------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~-  378 (577)
T 2ymu_A          314 DGQTIASASDDKTVKLWNRNGQ-------------HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLL-  378 (577)
T ss_dssp             TSSEEEEEETTSCEEEEETTSC-------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEE-
T ss_pred             CCCEEEEEeCCCeEEEEeCCCC-------------eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEE-
Confidence            3678999999999999997654             11223455555  8999999999 999999999999964 3322 


Q ss_pred             cccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744          102 INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA  180 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~  180 (308)
                      .....|...+..+.|+|++.. ++++.|+.|++||.. + +.+..+.+|...|++++|+|++++|++++.|++|++||..
T Consensus       379 ~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~  456 (577)
T 2ymu_A          379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN  456 (577)
T ss_dssp             EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-C-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-C-CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence            234556777999999999976 889999999999964 4 5788899999999999999999999999999999999965


Q ss_pred             CCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEE
Q 021744          181 SGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAW  254 (308)
Q Consensus       181 ~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iw  254 (308)
                       ++.+..+. +...+.++  .|++++|++++ |+.|++||........+.+|...|++++|+|+  +|++++.||.|++|
T Consensus       457 -~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lw  535 (577)
T 2ymu_A          457 -GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW  535 (577)
T ss_dssp             -SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             -CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEE
Confidence             56666665 77788766  58899999876 99999999754444488999999999999999  99999999999999


Q ss_pred             EcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEe
Q 021744          255 KFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIG  298 (308)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~  298 (308)
                      |...     +++..+.+|...|.+ +|+||+++|++++ +..|.+|
T Consensus       536 d~~~-----~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~W  576 (577)
T 2ymu_A          536 NRNG-----QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW  576 (577)
T ss_dssp             CTTS-----CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             eCCC-----CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence            9643     778889999999999 9999999998655 5556554

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.7e-34  Score=249.82  Aligned_cols=267  Identities=16%  Similarity=0.195  Sum_probs=204.6

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccc-cCCCC-----CCccccccc--eeEEecCCCe-eeccCCCcEEEEECC
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHR-ELPLP-----PAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAG   95 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~-~~~~~-----~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~   95 (308)
                      .+.+||+++ |+++++|+...+........+. ....+     .....+...  +++|+|+|++ ++|+.|++|++||+.
T Consensus        75 dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~  153 (393)
T 1erj_A           75 DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE  153 (393)
T ss_dssp             TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            367888876 7899999988762200000000 00000     000112222  7999999999 999999999999998


Q ss_pred             CCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC-CCCEEEEeeCCCc
Q 021744           96 NSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDET  173 (308)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~  173 (308)
                      +++... ....|...+..+.|+|++.. ++++.|+.|++||++++ +....+. +...+.+++|+| ++++|++++.|++
T Consensus       154 ~~~~~~-~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~  230 (393)
T 1erj_A          154 NRKIVM-ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG-QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRA  230 (393)
T ss_dssp             TTEEEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSC
T ss_pred             CCcEEE-EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC-eeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCc
Confidence            775442 34567778999999999966 89999999999999998 6666665 667899999999 8899999999999


Q ss_pred             EEEEeCCCCeEEEEEe--------CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCc------------ee-eeeCCC
Q 021744          174 VRVWDCASGQCAGVIN--------LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNT------------DL-SLSGPV  229 (308)
Q Consensus       174 v~~wd~~~~~~~~~~~--------~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~------------~~-~~~~~~  229 (308)
                      |++||+++++.+..+.        |...+.++  .+++++|++++ |+.|++||+++..            +. .+.+|.
T Consensus       231 v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~  310 (393)
T 1erj_A          231 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK  310 (393)
T ss_dssp             EEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCS
T ss_pred             EEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEeccc
Confidence            9999999998887763        55667766  47899999877 9999999997642            22 677899


Q ss_pred             CCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEec------CCCeEEEee-ceEEEEee
Q 021744          230 GQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR------DVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       230 ~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~------d~~~l~~s~-s~~i~~~~  299 (308)
                      ..|.+++++|+  +|++|+.|+.|++||+.++    +++..+.+|...|.+ +|++      ++.+|++++ +..|.+|.
T Consensus       311 ~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~----~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~  386 (393)
T 1erj_A          311 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSG----NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK  386 (393)
T ss_dssp             SCEEEEEECGGGCEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEECCCC----eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence            99999999998  9999999999999999987    778889999999999 8876      677777555 55555554

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.7e-34  Score=242.91  Aligned_cols=229  Identities=17%  Similarity=0.234  Sum_probs=189.5

Q ss_pred             Cccccccc--eeEEecCC-Ce-eeccCCCcEEEEECCCCCCc----ccccceeeeeeeeeeeecCCce-EEeeCCCeEEE
Q 021744           63 AATANGAA--AKRFANNT-WG-RNNNFNNHSNNYRAGNSKNS----NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHS  133 (308)
Q Consensus        63 ~~~gh~~~--~i~~s~~g-~~-~s~~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~i  133 (308)
                      .+.||.+.  +++|+|++ ++ ++|+.|++|++|++...+..    .....+|...+..+.|++++.. ++++.|+.|++
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~   91 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL   91 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEE
Confidence            45789888  89999976 66 99999999999998643221    1234567778999999999976 89999999999


Q ss_pred             EEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEEE--c------CCCEE
Q 021744          134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCMI--S------EGPWI  204 (308)
Q Consensus       134 wd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~~--~------~~~~l  204 (308)
                      ||+.++ +.+..+.+|...|.+++|+|++.+|++++.|++|++||++. +++..+. +...+.++.  +      ++..+
T Consensus        92 wd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l  169 (319)
T 3frx_A           92 WDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTI  169 (319)
T ss_dssp             EETTTT-EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------CCEE
T ss_pred             EECCCC-CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCccEE
Confidence            999999 88899999999999999999999999999999999999974 4555554 777777662  3      34467


Q ss_pred             EEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-E
Q 021744          205 FIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-H  279 (308)
Q Consensus       205 ~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~  279 (308)
                      ++++ |+.|++||+++.+.. .+.+|...|.+++|+|+  +|++|+.||.|++||+.++    +.+..+..+ ..+.+ +
T Consensus       170 ~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~-~~v~~~~  244 (319)
T 3frx_A          170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK----KAMYTLSAQ-DEVFSLA  244 (319)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT----EEEEEEECC-SCEEEEE
T ss_pred             EEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----cEEEEecCC-CcEEEEE
Confidence            7665 999999999998877 78899999999999999  9999999999999999987    666777654 56777 9


Q ss_pred             EecCCCeEEEeeceEEEEe
Q 021744          280 FSRDVTSLLGSVSFIMFIG  298 (308)
Q Consensus       280 ~s~d~~~l~~s~s~~i~~~  298 (308)
                      |+|++.+|+++.+..+.++
T Consensus       245 ~sp~~~~la~~~~~~i~v~  263 (319)
T 3frx_A          245 FSPNRYWLAAATATGIKVF  263 (319)
T ss_dssp             ECSSSSEEEEEETTEEEEE
T ss_pred             EcCCCCEEEEEcCCCcEEE
Confidence            9999999987774444433

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=8.2e-34  Score=248.24  Aligned_cols=257  Identities=13%  Similarity=0.171  Sum_probs=207.4

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCcccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      +.++++++.|++|++|+..+.           . ......+|... ..+++|++.+ ++++.|++|++||+.+++.. ..
T Consensus        68 g~~l~~~~~d~~v~i~d~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~  134 (420)
T 3vl1_A           68 GSHLYKARLDGHDFLFNTIIR-----------D-GSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR-EI  134 (420)
T ss_dssp             ETTEEEEEETTEEEEEECCSE-----------E-TTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE-EE
T ss_pred             CCeEEEEEcCCcEEEEEeccc-----------c-eeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCccee-ee
Confidence            678999999999999998876           1 11222344333 5578999999 99999999999999876554 23


Q ss_pred             cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744          104 NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~  182 (308)
                      ...|...+.++.|+|++.. ++++.|+.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|++|++||++++
T Consensus       135 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~  213 (420)
T 3vl1_A          135 DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG-SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG  213 (420)
T ss_dssp             TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred             cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC-cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC
Confidence            3567788999999999976 89999999999999998 788899999999999999999999999999999999999999


Q ss_pred             eEEEEEe----CCCeeEEE-----------------------EcCCCEEEEEc-CCcEEEEEcCCCcee-e-eeCCCCCE
Q 021744          183 QCAGVIN----LGGEVGCM-----------------------ISEGPWIFIGV-TNFVKAWNTQTNTDL-S-LSGPVGQV  232 (308)
Q Consensus       183 ~~~~~~~----~~~~v~~~-----------------------~~~~~~l~~~~-d~~i~~wd~~~~~~~-~-~~~~~~~v  232 (308)
                      +.+..+.    +...+.++                       .+++++|++++ |+.|++||+++++.. . ...|...|
T Consensus       214 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v  293 (420)
T 3vl1_A          214 TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSC  293 (420)
T ss_dssp             EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCE
T ss_pred             ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCc
Confidence            9998887    22333332                       25677888776 999999999998876 3 34588899


Q ss_pred             EEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccc-cCCCeEEEEecCCCeEEEee-ceEEEEee
Q 021744          233 YAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKV-HTDSNRAHFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       233 ~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      .+++|+|+   +|++|+.||.|++||++++.   .++..+.. |...+.+.+.+++.+|++++ +..+.++.
T Consensus       294 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~  362 (420)
T 3vl1_A          294 NSLTVDGNNANYIYAGYENGMLAQWDLRSPE---CPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDI  362 (420)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTT---SCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEE
T ss_pred             eeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc---CchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEe
Confidence            99999998   89999999999999999863   44667766 66777775666787777655 55555544

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7.3e-34  Score=258.45  Aligned_cols=254  Identities=19%  Similarity=0.261  Sum_probs=211.9

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .+..+++++.|++|++|+....             ....+.+|...  +++|+|++.. ++++.|++|++||+...+.. 
T Consensus       273 d~~~l~~~~~d~~i~~w~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~-  338 (577)
T 2ymu_A          273 DGQTIASASDDKTVKLWNRNGQ-------------LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ-  338 (577)
T ss_dssp             TSSEEEEEETTSCEEEEETTSC-------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE-
T ss_pred             CCCEEEEEeCCCEEEEEeCCCc-------------EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE-
Confidence            3578999999999999996533             12234567666  8999999999 99999999999998654332 


Q ss_pred             cccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744          102 INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA  180 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~  180 (308)
                       ....|...+..+.|+|++.. ++++.|+.|++||.. + +.+..+.+|...|.+++|+|++++|++++.|+.|++||. 
T Consensus       339 -~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~-~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-  414 (577)
T 2ymu_A          339 -TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-  414 (577)
T ss_dssp             -EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-C-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-
T ss_pred             -EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-C-CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-
Confidence             34556677899999999977 889999999999964 4 578889999999999999999999999999999999995 


Q ss_pred             CCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEE
Q 021744          181 SGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAW  254 (308)
Q Consensus       181 ~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iw  254 (308)
                      +++.+..+. +...+.++  .+++++|++++ |+.|++||........+.+|...|++++|+|+  +|++++.|+.|++|
T Consensus       415 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw  494 (577)
T 2ymu_A          415 NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW  494 (577)
T ss_dssp             TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEE
Confidence            466666666 77777766  57899999776 99999999865555588999999999999999  99999999999999


Q ss_pred             EcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEeecC
Q 021744          255 KFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQNN  301 (308)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~~~  301 (308)
                      |...     +++..+.+|...|++ +|+||+++|++++ +..|.++..+
T Consensus       495 ~~~~-----~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          495 NRNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             ETTS-----CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             cCCC-----CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence            9643     778889999999999 9999999999665 6666666543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.1e-33  Score=241.32  Aligned_cols=231  Identities=13%  Similarity=0.176  Sum_probs=194.4

Q ss_pred             Cccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCC
Q 021744           63 AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGD  138 (308)
Q Consensus        63 ~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~  138 (308)
                      .+.+|...  +++|+|++.+ ++|+.|++|++||+.+++... ....|...+..+.|+|++.. ++|+.|+.|++|++.+
T Consensus        50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~  128 (340)
T 1got_B           50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH-AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT  128 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE-EEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce-EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECcc
Confidence            45688888  8999999999 999999999999998776542 23445666899999999977 8899999999999986


Q ss_pred             Cc---eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCc
Q 021744          139 GF---KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNF  211 (308)
Q Consensus       139 ~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~  211 (308)
                      ..   +....+.+|.+.|.++.|++++ .+++++.|++|++||+++++.+..+. |...+.++  .++++++++++ |+.
T Consensus       129 ~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~  207 (340)
T 1got_B          129 REGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS  207 (340)
T ss_dssp             CSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence            52   3566788999999999999876 58999999999999999999998887 77778776  47888998876 999


Q ss_pred             EEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecc--ccCCCeEE-EEecCCC
Q 021744          212 VKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK--VHTDSNRA-HFSRDVT  285 (308)
Q Consensus       212 i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~-~~s~d~~  285 (308)
                      |++||+++++.. .+.+|...|++++|+|+  +|++|+.||.|++||+++.    +.+..+.  .+...+.+ +|+|+++
T Consensus       208 v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~----~~~~~~~~~~~~~~v~~~~~s~~g~  283 (340)
T 1got_B          208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD----QELMTYSHDNIICGITSVSFSKSGR  283 (340)
T ss_dssp             EEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCTTCCSCEEEEEECTTSS
T ss_pred             EEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC----cEEEEEccCCcccceEEEEECCCCC
Confidence            999999999877 78899999999999999  9999999999999999986    4444443  33457888 9999999


Q ss_pred             eEEEee-ceEEEEee
Q 021744          286 SLLGSV-SFIMFIGQ  299 (308)
Q Consensus       286 ~l~~s~-s~~i~~~~  299 (308)
                      +|++++ +..|.++.
T Consensus       284 ~l~~g~~d~~i~vwd  298 (340)
T 1got_B          284 LLLAGYDDFNCNVWD  298 (340)
T ss_dssp             EEEEEETTSEEEEEE
T ss_pred             EEEEECCCCeEEEEE
Confidence            998766 55555554

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.1e-34  Score=248.96  Aligned_cols=255  Identities=12%  Similarity=0.114  Sum_probs=182.4

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccC------CCcEEEEECCC
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNF------NNHSNNYRAGN   96 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~------d~~i~vwd~~~   96 (308)
                      .+++..++.+.....|+....           .     ...|+..  +++|+|||.+ |+|+.      |++|++|+..+
T Consensus        16 ~~~~~~~~g~~~~~~w~~p~~-----------~-----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~   79 (357)
T 4g56_B           16 ENLYFQSNGSSKGSAWGRPVT-----------A-----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPE   79 (357)
T ss_dssp             ----------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC
T ss_pred             cceEEecCCCccccccCCCCC-----------C-----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCC
Confidence            345666666778888975433           1     2357666  8999999999 99987      77899999876


Q ss_pred             CCCccc---ccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCcee---eeEeeCcccceEEEEEeCCCCEEEEeeC
Q 021744           97 SKNSNI---NNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKL---LTQLEGHQKVVSGITLPSGSDKLYSGSK  170 (308)
Q Consensus        97 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~l~s~s~  170 (308)
                      +.+...   ....|...+..++|+|++.+++++.|+.|++||+.++...   .....+|...|.+++|+|++++|++++.
T Consensus        80 ~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~  159 (357)
T 4g56_B           80 GAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK  159 (357)
T ss_dssp             ---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred             CCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC
Confidence            654332   2245666699999999999999999999999999877311   2344589999999999999999999999


Q ss_pred             CCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCC-EEEEEc-CCcEEEEEcCCCcee---eeeCCCCCEEEEEEeCC--
Q 021744          171 DETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGP-WIFIGV-TNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGND--  240 (308)
Q Consensus       171 dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~-~l~~~~-d~~i~~wd~~~~~~~---~~~~~~~~v~~~~~~~~--  240 (308)
                      |++|++||+++++++..+. |...+.++  .+++. ++++++ |+.|++||+++++..   ....+...+.+++|+|+  
T Consensus       160 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  239 (357)
T 4g56_B          160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD  239 (357)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc
Confidence            9999999999999999988 77788877  35543 555554 999999999998766   34456778999999987  


Q ss_pred             -EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCC-eEEEee-ceEEEEeec
Q 021744          241 -LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVT-SLLGSV-SFIMFIGQN  300 (308)
Q Consensus       241 -~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~-~l~~s~-s~~i~~~~~  300 (308)
                       +|++|+.|+.|++||++++    +++..+..|...|++ +|+|++. +|++++ +..|.++..
T Consensus       240 ~~la~g~~d~~i~~wd~~~~----~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~  299 (357)
T 4g56_B          240 DTFACGDETGNVSLVNIKNP----DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDA  299 (357)
T ss_dssp             TEEEEEESSSCEEEEESSCG----GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred             ceEEEeecccceeEEECCCC----cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence             8999999999999999987    778889999999999 9999985 565444 555665543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.1e-33  Score=240.33  Aligned_cols=268  Identities=13%  Similarity=0.105  Sum_probs=206.2

Q ss_pred             CCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCc
Q 021744           24 GGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        24 ~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~  100 (308)
                      +.+.+|||||.|++|++||.........       .....+.+|...  +++|+|++.+ ++++.|+.|++|+.......
T Consensus        49 ~~~~~l~S~s~D~~i~vWd~~~~~~~~~-------~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~  121 (340)
T 4aow_A           49 QFPDMILSASRDKTIIMWKLTRDETNYG-------IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT  121 (340)
T ss_dssp             TCTTEEEEEETTSCEEEEEECCSSSCSE-------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCCcccc-------eeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeeccccee
Confidence            3467899999999999999876511100       011234677777  8999999999 99999999999999765433


Q ss_pred             ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCC--CEEEEeeCCCcEEEE
Q 021744          101 NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS--DKLYSGSKDETVRVW  177 (308)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~dg~v~~w  177 (308)
                      . ....+...+....+.+.+.. ++++.|+.+++||+.........+.+|...+..++|++++  .++++++.|++|++|
T Consensus       122 ~-~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~  200 (340)
T 4aow_A          122 R-RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW  200 (340)
T ss_dssp             E-EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEE
T ss_pred             e-eecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEE
Confidence            2 22233334666677777755 8899999999999987755566677899999999998765  568999999999999


Q ss_pred             eCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC-EEEEEcCCCeEE
Q 021744          178 DCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAIL  252 (308)
Q Consensus       178 d~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~  252 (308)
                      |+++++.+..+. +...+.++  .+++++|++++ |+.|++||+++.+.+....+...+.+++|+|+ .+++++.|+.|+
T Consensus       201 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~  280 (340)
T 4aow_A          201 NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIK  280 (340)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEE
T ss_pred             ECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEE
Confidence            999999998887 77788876  47899999876 99999999999988854445678999999999 778888899999


Q ss_pred             EEEcCCCCccc-----ccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          253 AWKFNVTTNCF-----EPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       253 iwd~~~~~~~~-----~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      +||++.+....     ........|...|.+ +|+||+++|++++ +..|.+|.
T Consensus       281 iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~  334 (340)
T 4aow_A          281 IWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ  334 (340)
T ss_dssp             EEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            99998752100     111223468889999 9999999999665 55555554

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=8.9e-34  Score=263.69  Aligned_cols=264  Identities=14%  Similarity=0.170  Sum_probs=206.2

Q ss_pred             CCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCc
Q 021744           24 GGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        24 ~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~  100 (308)
                      +...+|+|+|.|++|++|+........       ......+.+|...  +++|+|++++ ++|+.|++|+|||+.+++..
T Consensus       393 ~~~~~l~s~s~D~~i~~W~~~~~~~~~-------~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~  465 (694)
T 3dm0_A          393 DNADIIVSASRDKSIILWKLTKDDKAY-------GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVST  465 (694)
T ss_dssp             TCCSEEEEEETTSEEEEEECCCSTTCS-------CEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCCCEEEEEeCCCcEEEEEccCCCccc-------ccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcce
Confidence            345789999999999999987651100       0011235678777  8999999999 99999999999999877544


Q ss_pred             ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeE---eeCcccceEEEEEeCCC--CEEEEeeCCCcE
Q 021744          101 NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQ---LEGHQKVVSGITLPSGS--DKLYSGSKDETV  174 (308)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~---~~~h~~~v~~~~~~~~~--~~l~s~s~dg~v  174 (308)
                      . ....|...+.++.|+|++.. ++++.|+.|++||.... .....   ..+|...|.+++|+|++  ..+++++.|++|
T Consensus       466 ~-~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v  543 (694)
T 3dm0_A          466 R-RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV  543 (694)
T ss_dssp             E-EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCE
T ss_pred             e-EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-cceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeE
Confidence            2 34567788999999999965 99999999999998765 22222   24789999999999986  579999999999


Q ss_pred             EEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC-EEEEEcCCC
Q 021744          175 RVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDG  249 (308)
Q Consensus       175 ~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg  249 (308)
                      ++||+++++....+. |...+.++  .+++++|++++ |+.|++||+++++.+....+...+.+++|+|+ .+++++.++
T Consensus       544 ~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~  623 (694)
T 3dm0_A          544 KVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEH  623 (694)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETT
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCC
Confidence            999999999988887 77788776  57899999877 99999999999988744445678999999999 555555677


Q ss_pred             eEEEEEcCCCCcccccceecccc-------------------CCCeEE-EEecCCCeEEEee-ceEEEEeec
Q 021744          250 AILAWKFNVTTNCFEPAASLKVH-------------------TDSNRA-HFSRDVTSLLGSV-SFIMFIGQN  300 (308)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~~-------------------~~~v~~-~~s~d~~~l~~s~-s~~i~~~~~  300 (308)
                      .|++||++++    +.+..+..+                   ...+++ +|+|||++|++++ +..|.+|.-
T Consensus       624 ~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i  691 (694)
T 3dm0_A          624 GIKIWDLESK----SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI  691 (694)
T ss_dssp             EEEEEETTTT----EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             CEEEEECCCC----CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence            8999999986    444433321                   123567 9999999999665 667766653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.8e-34  Score=243.98  Aligned_cols=264  Identities=9%  Similarity=0.053  Sum_probs=206.7

Q ss_pred             CCCceEEecC---CCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecC---CCe-eeccCCCcEEEEECC
Q 021744           25 GGGLSTADTR---QKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANN---TWG-RNNNFNNHSNNYRAG   95 (308)
Q Consensus        25 ~~~~~~s~s~---d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~---g~~-~s~~~d~~i~vwd~~   95 (308)
                      +..++++++.   |++|++|+..++           ........+|...  +++|+|+   +.+ ++++.|++|++||+.
T Consensus        30 ~~~l~~~~s~~~~d~~v~iw~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~   98 (357)
T 3i2n_A           30 SAKFVTMGNFARGTGVIQLYEIQHG-----------DLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE   98 (357)
T ss_dssp             SSEEEEEEC--CCCEEEEEEEECSS-----------SEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT
T ss_pred             CceEEEecCccCCCcEEEEEeCCCC-----------cccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC
Confidence            3456778877   999999998876           1111222356555  8999998   577 999999999999998


Q ss_pred             CCCCcccccceeeeeeeeee------eecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCccc----ceEEEE----EeC
Q 021744           96 NSKNSNINNRAVIKTDILCR------NWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQK----VVSGIT----LPS  160 (308)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~----~v~~~~----~~~  160 (308)
                      +++........|...+..+.      |++++.. ++++.|+.|++||+.++...+..+..|.+    .+.+++    |+|
T Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  178 (357)
T 3i2n_A           99 APEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ  178 (357)
T ss_dssp             SCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-
T ss_pred             CCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC
Confidence            87633344556777777774      5677765 88999999999999988446777766655    888998    788


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--Ec---CCCEEEEEc-CCcEEEEEcCCCcee-ee-----eCC
Q 021744          161 GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--IS---EGPWIFIGV-TNFVKAWNTQTNTDL-SL-----SGP  228 (308)
Q Consensus       161 ~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~---~~~~l~~~~-d~~i~~wd~~~~~~~-~~-----~~~  228 (308)
                      +++++++++.|+.|++||+++++......+...+.++  .+   ++.++++++ |+.|++||+++++.. .+     .+|
T Consensus       179 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  258 (357)
T 3i2n_A          179 EERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH  258 (357)
T ss_dssp             CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECC
T ss_pred             CCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCC
Confidence            9999999999999999999999988877788888877  35   788888776 999999999887654 33     389


Q ss_pred             CCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcc---------------cccceeccccCCCeEE-EEecCCCeEE-
Q 021744          229 VGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC---------------FEPAASLKVHTDSNRA-HFSRDVTSLL-  288 (308)
Q Consensus       229 ~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~---------------~~~~~~~~~~~~~v~~-~~s~d~~~l~-  288 (308)
                      ...|++++|+|+   +|++++.||.|++||++.+...               .+++..+..|...|.+ +|+|++++|+ 
T Consensus       259 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  338 (357)
T 3i2n_A          259 KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCV  338 (357)
T ss_dssp             SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEE
T ss_pred             cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEE
Confidence            999999999998   6999999999999999865321               1356677889999999 9999999998 


Q ss_pred             Eee-ceEEEEee
Q 021744          289 GSV-SFIMFIGQ  299 (308)
Q Consensus       289 ~s~-s~~i~~~~  299 (308)
                      +++ +..|.++.
T Consensus       339 s~~~d~~i~iw~  350 (357)
T 3i2n_A          339 CSSFDQTVRVLI  350 (357)
T ss_dssp             EEETTSEEEEEE
T ss_pred             EecCCCcEEEEE
Confidence            444 55555554

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.3e-34  Score=246.29  Aligned_cols=257  Identities=13%  Similarity=0.053  Sum_probs=203.0

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEec-CCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFAN-NTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~-~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      ..++++++.|++|++||..+..          ........+|...  +++|+| ++.+ ++++.|++|++||+...... 
T Consensus        86 ~~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-  154 (383)
T 3ei3_B           86 PTTVAVGSKGGDIILWDYDVQN----------KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQ-  154 (383)
T ss_dssp             TTEEEEEEBTSCEEEEETTSTT----------CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEE-
T ss_pred             CCEEEEEcCCCeEEEEeCCCcc----------cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceE-
Confidence            3799999999999999988761          0111122357666  899999 6677 99999999999999753221 


Q ss_pred             ccc--ceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCC-EEEEeeCCCcEEEE
Q 021744          102 INN--RAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVW  177 (308)
Q Consensus       102 ~~~--~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~v~~w  177 (308)
                      ...  ..+...+.++.|++++.. ++++.|+.|++||+. + +.+..+.+|...|.+++|+|+++ ++++++.|++|++|
T Consensus       155 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw  232 (383)
T 3ei3_B          155 VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-G-HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLW  232 (383)
T ss_dssp             EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-S-CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred             EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-C-CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEE
Confidence            111  222355889999999976 889999999999994 5 67888999999999999999998 89999999999999


Q ss_pred             eCCC----CeEEEEEeCCCeeEEE--Ec-CCCEEEEEc-CCcEEEEEcCCCcee-eeeCCC-----------------CC
Q 021744          178 DCAS----GQCAGVINLGGEVGCM--IS-EGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPV-----------------GQ  231 (308)
Q Consensus       178 d~~~----~~~~~~~~~~~~v~~~--~~-~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~-----------------~~  231 (308)
                      |+++    ++++..+.+...+.++  .+ ++++|++++ |+.|++||+++++.. .+..|.                 ..
T Consensus       233 d~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  312 (383)
T 3ei3_B          233 DLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYD  312 (383)
T ss_dssp             EGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSS
T ss_pred             eCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCC
Confidence            9998    6778888888888877  46 788998776 999999999988764 444332                 34


Q ss_pred             EEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccc--cCCCeEE-EEecCCCeEEEeeceEEEEeec
Q 021744          232 VYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKV--HTDSNRA-HFSRDVTSLLGSVSFIMFIGQN  300 (308)
Q Consensus       232 v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~-~~s~d~~~l~~s~s~~i~~~~~  300 (308)
                      +..++++|+ .+ +++.|+.|++||+.++    +++..+..  |...+.+ +|+|++++|+++++..|.++.-
T Consensus       313 ~~~~~~s~dg~~-s~s~d~~i~iwd~~~~----~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~  380 (383)
T 3ei3_B          313 LIVAGRYPDDQL-LLNDKRTIDIYDANSG----GLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNR  380 (383)
T ss_dssp             EEEEECBCCTTT-CTTCCCCEEEEETTTC----CEEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEEC
T ss_pred             ceEEEecCCccc-ccCCCCeEEEEecCCC----ceeeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEec
Confidence            445666666 33 7789999999999987    66777775  5678888 9999999999777767777654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-33  Score=237.50  Aligned_cols=282  Identities=9%  Similarity=0.010  Sum_probs=227.4

Q ss_pred             ccCCCCceeEEEeecCCCCC-----CCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEe
Q 021744            3 FDAHGGNKRVFHRLGGGGGD-----GGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFA   75 (308)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s   75 (308)
                      .++.|...|.+.-.|+....     +..+.+|++++.|+.|++||..++            .....+.+|...  +++|+
T Consensus        16 ~~~~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~------------~~~~~~~~h~~~v~~~~~~   83 (369)
T 3zwl_B           16 LYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG------------ERLGTLDGHTGTIWSIDVD   83 (369)
T ss_dssp             CCSSCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC------------CEEEEECCCSSCEEEEEEC
T ss_pred             eEEeccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc------------hhhhhhhhcCCcEEEEEEc
Confidence            35667777776666666432     224679999999999999998876            112234567666  89999


Q ss_pred             cCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCC-----CeEEEEEcCCCc--------
Q 021744           76 NNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKC-----KFLHSWTVGDGF--------  140 (308)
Q Consensus        76 ~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d-----~~i~iwd~~~~~--------  140 (308)
                      |++++ ++++.|++|++||+.+++....  ..+...+..+.|++++.. ++++.+     +.|++||+....        
T Consensus        84 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~  161 (369)
T 3zwl_B           84 CFTKYCVTGSADYSIKLWDVSNGQCVAT--WKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKV  161 (369)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTCCEEEE--EECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEEE--eecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccc
Confidence            99999 9999999999999988765532  235666899999999977 777777     999999997652        


Q ss_pred             --eeeeEeeCccc--ceEEEEEeCCCCEEEEeeCCCcEEEEeCCC-CeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCc
Q 021744          141 --KLLTQLEGHQK--VVSGITLPSGSDKLYSGSKDETVRVWDCAS-GQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNF  211 (308)
Q Consensus       141 --~~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~-~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~  211 (308)
                        .....+..|..  .+.+++|+|++++|++++.|+.|++||+++ .+.+..+. +...+.++  .+++++|++++ |+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  241 (369)
T 3zwl_B          162 SEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN  241 (369)
T ss_dssp             CSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCce
Confidence              13445566666  999999999999999999999999999998 78888877 67777766  47888888776 999


Q ss_pred             EEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCC--------------eEEEEEcCCCCcccccceeccccCCC
Q 021744          212 VKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDG--------------AILAWKFNVTTNCFEPAASLKVHTDS  275 (308)
Q Consensus       212 i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~  275 (308)
                      |++||+++++......+...+.+++|+|+  ++++++.++              .+++||+.++    +++..+.+|...
T Consensus       242 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~----~~~~~~~~~~~~  317 (369)
T 3zwl_B          242 SFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE----EEIGRVQGHFGP  317 (369)
T ss_dssp             EEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC----CEEEEEECCSSC
T ss_pred             EEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC----cchhheecccCc
Confidence            99999999988844447889999999999  888888888              8999999987    778888999999


Q ss_pred             eEE-EEecCCCeEEEee-ceEEEEeecCc
Q 021744          276 NRA-HFSRDVTSLLGSV-SFIMFIGQNNK  302 (308)
Q Consensus       276 v~~-~~s~d~~~l~~s~-s~~i~~~~~~~  302 (308)
                      |.+ +|+|++++|++++ +..|.++.-..
T Consensus       318 v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          318 LNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence            999 9999999998666 66666665443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.5e-33  Score=243.33  Aligned_cols=259  Identities=15%  Similarity=0.118  Sum_probs=207.0

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      +..+++++.|+.|++|+..++.           ........|...  +++|+|++.+ ++|+.|+.|++||+.+++... 
T Consensus       103 ~~~l~~~~~d~~v~lw~~~~~~-----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-  170 (401)
T 4aez_A          103 NLNVVAVALERNVYVWNADSGS-----------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR-  170 (401)
T ss_dssp             TTSEEEEEETTEEEEEETTTCC-----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-
T ss_pred             CCCEEEEECCCeEEEeeCCCCc-----------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE-
Confidence            3568889999999999998771           111111124444  8999999999 999999999999998776543 


Q ss_pred             ccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744          103 NNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~  182 (308)
                      ....|...+.++.+.+ ..+++++.|+.|++||++.....+..+.+|...|.+++|+|++++|++++.|+.|++||++++
T Consensus       171 ~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~  249 (401)
T 4aez_A          171 TMAGHQARVGCLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS  249 (401)
T ss_dssp             EECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS
T ss_pred             EecCCCCceEEEEECC-CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC
Confidence            3346667788888832 355899999999999999554778889999999999999999999999999999999999999


Q ss_pred             eEEEEEe-CCCeeEEE--EcCC-CEEEEEc---CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEE--EcCCCeE
Q 021744          183 QCAGVIN-LGGEVGCM--ISEG-PWIFIGV---TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFA--GTQDGAI  251 (308)
Q Consensus       183 ~~~~~~~-~~~~v~~~--~~~~-~~l~~~~---d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~--g~~dg~i  251 (308)
                      +.+..+. +...+.++  .+++ .++++++   |+.|++||+++++......+...+.+++|+|+  ++++  |+.||.|
T Consensus       250 ~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i  329 (401)
T 4aez_A          250 IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNL  329 (401)
T ss_dssp             SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEE
T ss_pred             CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcE
Confidence            9988886 67777766  3544 5666653   89999999999988854457788999999999  7777  5589999


Q ss_pred             EEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          252 LAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      ++||+.++..  .....+.+|...|.+ +|+|++++|++++ +..|.++.
T Consensus       330 ~v~~~~~~~~--~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~  377 (401)
T 4aez_A          330 SIWSYSSSGL--TKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR  377 (401)
T ss_dssp             EEEEEETTEE--EEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred             EEEecCCccc--eeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            9999998632  444557789999999 9999999998665 55555554

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.5e-33  Score=232.33  Aligned_cols=252  Identities=13%  Similarity=0.146  Sum_probs=203.8

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCc--
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS--  100 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~--  100 (308)
                      +.++++++.|++|++||....            .......+|...  +++|+|++.+ ++++.|+.|++|++......  
T Consensus        29 ~~~l~s~~~dg~v~vw~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~   96 (313)
T 3odt_A           29 DSKVASVSRDGTVRLWSKDDQ------------WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDP   96 (313)
T ss_dssp             TTEEEEEETTSEEEEEEESSS------------EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC
T ss_pred             CCEEEEEEcCCcEEEEECCCC------------EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCc
Confidence            568999999999999998765            112223345555  8999999999 99999999999999654322  


Q ss_pred             ccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC-CCCEEEEeeCCCcEEEEeC
Q 021744          101 NINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDC  179 (308)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~v~~wd~  179 (308)
                      ......|...+..+.+ .....++++.|+.|++||  .. +....+..|...+.+++|.| +++++++++.|+.|++|| 
T Consensus        97 ~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~~~d--~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d-  171 (313)
T 3odt_A           97 LYTLIGHQGNVCSLSF-QDGVVISGSWDKTAKVWK--EG-SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ-  171 (313)
T ss_dssp             -CEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEE--TT-EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE-
T ss_pred             ccchhhcccCEEEEEe-cCCEEEEEeCCCCEEEEc--CC-cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe-
Confidence            2233456666877777 334559999999999999  44 67888899999999999988 899999999999999999 


Q ss_pred             CCCeEEEEEe--CCCeeEEE--EcCCCEEEEE-cCCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC-EEEEEcCCCeEE
Q 021744          180 ASGQCAGVIN--LGGEVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAIL  252 (308)
Q Consensus       180 ~~~~~~~~~~--~~~~v~~~--~~~~~~l~~~-~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~  252 (308)
                       ..+.+..+.  +...+.++  .+++. ++++ .|+.|++||+++++.+ .+..|...|++++|+|+ .|++++.||.|+
T Consensus       172 -~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~  249 (313)
T 3odt_A          172 -NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVR  249 (313)
T ss_dssp             -TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEE
T ss_pred             -cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEE
Confidence             456666665  66667766  46666 5554 5999999999999887 78889999999999999 999999999999


Q ss_pred             EEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEEEeec
Q 021744          253 AWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMFIGQN  300 (308)
Q Consensus       253 iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~~~~  300 (308)
                      +||++++    +++..+..|...+.+ +|+|++++++++.+..|.++.-
T Consensus       250 iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~  294 (313)
T 3odt_A          250 IWSKENG----SLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQ  294 (313)
T ss_dssp             EECTTTC----CEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEES
T ss_pred             EEECCCC----ceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeC
Confidence            9999987    778888899999999 9999999776666666665553

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-33  Score=245.97  Aligned_cols=263  Identities=11%  Similarity=0.130  Sum_probs=208.6

Q ss_pred             CCCCCceEEe----------cCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcE
Q 021744           23 GGGGGLSTAD----------TRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHS   89 (308)
Q Consensus        23 ~~~~~~~~s~----------s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i   89 (308)
                      .++..+++++          +.|++|++|+...+...          .......|...  +++|+|++.+ ++++.|++|
T Consensus        22 p~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v   91 (416)
T 2pm9_A           22 HDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE----------KPIASLQVDSKFNDLDWSHNNKIIAGALDNGSL   91 (416)
T ss_dssp             SSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC----------SCSCCCCCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred             CCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC----------cEEEEEecCCceEEEEECCCCCeEEEEccCCeE
Confidence            3444589998          89999999998876110          11111234444  8999999999 999999999


Q ss_pred             EEEECCC---CCCcccccceeeeeeeeeeeecC-Cce-EEeeCCCeEEEEEcCCCc------e--eeeEeeCcccceEEE
Q 021744           90 NNYRAGN---SKNSNINNRAVIKTDILCRNWVQ-GNC-MYGEKCKFLHSWTVGDGF------K--LLTQLEGHQKVVSGI  156 (308)
Q Consensus        90 ~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~g~~d~~i~iwd~~~~~------~--~~~~~~~h~~~v~~~  156 (308)
                      ++||+.+   +.........|...+.++.|+|+ +.. ++++.|+.|++||+.+..      .  ....+.+|...|.++
T Consensus        92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  171 (416)
T 2pm9_A           92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL  171 (416)
T ss_dssp             EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred             EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence            9999976   22233345567778999999998 554 889999999999998873      1  122346799999999


Q ss_pred             EEeCC-CCEEEEeeCCCcEEEEeCCCCeEEEEEeC-------CCeeEEE--EcCC-CEEEEEc-CC---cEEEEEcCCC-
Q 021744          157 TLPSG-SDKLYSGSKDETVRVWDCASGQCAGVINL-------GGEVGCM--ISEG-PWIFIGV-TN---FVKAWNTQTN-  220 (308)
Q Consensus       157 ~~~~~-~~~l~s~s~dg~v~~wd~~~~~~~~~~~~-------~~~v~~~--~~~~-~~l~~~~-d~---~i~~wd~~~~-  220 (308)
                      +|+|+ +.++++++.|+.|++||+++++.+..+..       ...+.++  .+++ .++++++ ++   .|++||++++ 
T Consensus       172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~  251 (416)
T 2pm9_A          172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN  251 (416)
T ss_dssp             EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred             EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence            99998 78999999999999999999999988884       5667766  3565 5777766 77   9999999986 


Q ss_pred             cee-eee-CCCCCEEEEEEeC-C--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCC-CeEEEee-c
Q 021744          221 TDL-SLS-GPVGQVYAMAVGN-D--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDV-TSLLGSV-S  292 (308)
Q Consensus       221 ~~~-~~~-~~~~~v~~~~~~~-~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~-~~l~~s~-s  292 (308)
                      +.. .+. +|...|.+++|+| +  +|++++.||.|++||++++    +++..+..|...+.+ +|+|++ .+|++++ +
T Consensus       252 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~----~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d  327 (416)
T 2pm9_A          252 TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA----EQLSQFPARGNWCFKTKFAPEAPDLFACASFD  327 (416)
T ss_dssp             SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC----CEEEEEECSSSCCCCEEECTTCTTEEEECCSS
T ss_pred             CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC----ccceeecCCCCceEEEEECCCCCCEEEEEecC
Confidence            344 666 8999999999999 5  9999999999999999987    778889999999999 999999 6777554 5


Q ss_pred             eEEEEee
Q 021744          293 FIMFIGQ  299 (308)
Q Consensus       293 ~~i~~~~  299 (308)
                      ..|.++.
T Consensus       328 ~~i~iw~  334 (416)
T 2pm9_A          328 NKIEVQT  334 (416)
T ss_dssp             SEEEEEE
T ss_pred             CcEEEEE
Confidence            5555554

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.9e-33  Score=237.61  Aligned_cols=232  Identities=12%  Similarity=0.160  Sum_probs=191.8

Q ss_pred             Cccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCC
Q 021744           63 AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGD  138 (308)
Q Consensus        63 ~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~  138 (308)
                      .+.||...  +++|+|++.+ ++|+.|++|++||..+++... ....+...+..+.|+|++.. ++|+.|+.+++|++..
T Consensus        59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~-~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~  137 (354)
T 2pbi_B           59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH-AVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTF  137 (354)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-EEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCC
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce-EEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEec
Confidence            45689888  9999999999 999999999999997765432 22334556899999999977 8899999999999864


Q ss_pred             C-----ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--Ec--CCCEEEEEc
Q 021744          139 G-----FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--IS--EGPWIFIGV  208 (308)
Q Consensus       139 ~-----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~--~~~~l~~~~  208 (308)
                      .     ......+.+|...|.+++|+|++..|++++.|++|++||+++++++..+. |...+.++  .+  ++++|++|+
T Consensus       138 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs  217 (354)
T 2pbi_B          138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGG  217 (354)
T ss_dssp             CTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEE
T ss_pred             cccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEe
Confidence            3     13456778899999999999999999999999999999999999999988 77777766  23  467888776


Q ss_pred             -CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccc--cCCCeEE-EEe
Q 021744          209 -TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKV--HTDSNRA-HFS  281 (308)
Q Consensus       209 -d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~-~~s  281 (308)
                       |+.|++||++++++. .+..|...|++++|+|+  +|++|+.|+.|++||++..    +.+..+..  +...+.+ +|+
T Consensus       218 ~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~----~~~~~~~~~~~~~~~~~~~~s  293 (354)
T 2pbi_B          218 CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD----REVAIYSKESIIFGASSVDFS  293 (354)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCTTCCSCEEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC----cEEEEEcCCCcccceeEEEEe
Confidence             999999999999887 78899999999999998  9999999999999999986    44444433  3346777 999


Q ss_pred             cCCCeEEEee-ceEEEEee
Q 021744          282 RDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       282 ~d~~~l~~s~-s~~i~~~~  299 (308)
                      |++.+|++++ +..|.++.
T Consensus       294 ~~g~~l~~g~~d~~i~vwd  312 (354)
T 2pbi_B          294 LSGRLLFAGYNDYTINVWD  312 (354)
T ss_dssp             TTSSEEEEEETTSCEEEEE
T ss_pred             CCCCEEEEEECCCcEEEEE
Confidence            9999998766 44444444

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-34  Score=258.43  Aligned_cols=266  Identities=7%  Similarity=-0.032  Sum_probs=189.2

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecC------CCe-eeccCCCcEEEEECCC
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANN------TWG-RNNNFNNHSNNYRAGN   96 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~------g~~-~s~~~d~~i~vwd~~~   96 (308)
                      +..+|+++.|++|++|+...+.   +...     ....+.+|.+.  .++|+|+      +.+ |+++.|++|+|||+..
T Consensus       173 ~~~laS~s~D~tI~iWd~~~~~---~~~~-----~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~  244 (524)
T 2j04_B          173 LEMFDKEKHSSCIQIFKMNTST---LHCV-----KVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIID  244 (524)
T ss_dssp             ---------CEEEEEEEEETTT---CCEE-----EEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCC
T ss_pred             hhhhccCCCCceEEEEEccCCC---CCce-----EEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCC
Confidence            4578899999999999987651   0000     00112345444  7999997      467 9999999999999976


Q ss_pred             CCCcc----------cccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEE--EEeCCC-C
Q 021744           97 SKNSN----------INNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGI--TLPSGS-D  163 (308)
Q Consensus        97 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~--~~~~~~-~  163 (308)
                      ++...          .....|...+.++.|++++.+++|+.||+|++||++++..+...+.+|...|.++  +|+|++ .
T Consensus       245 ~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~  324 (524)
T 2j04_B          245 NATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDT  324 (524)
T ss_dssp             CSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCC
T ss_pred             CccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCe
Confidence            64220          1223455668999999887779999999999999997644566789999999999  567887 8


Q ss_pred             EEEEeeCCCcEEEEeCCCCeEEEEEe-CC--Cee--EEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEE
Q 021744          164 KLYSGSKDETVRVWDCASGQCAGVIN-LG--GEV--GCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMA  236 (308)
Q Consensus       164 ~l~s~s~dg~v~~wd~~~~~~~~~~~-~~--~~v--~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~  236 (308)
                      +|+|++.|++|++||+++++++..+. +.  ..+  .++.|+++.+++++ |++|++||++++.+. .+.+|...|++++
T Consensus       325 ~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva  404 (524)
T 2j04_B          325 VVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIG  404 (524)
T ss_dssp             EEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEE
T ss_pred             EEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEE
Confidence            99999999999999999887766654 22  224  34468888888776 889999999998875 7889999999999


Q ss_pred             EeCC--EEEEEcCCCeEEEEEcCCCCcc----------------------------------------cccceeccccCC
Q 021744          237 VGND--LLFAGTQDGAILAWKFNVTTNC----------------------------------------FEPAASLKVHTD  274 (308)
Q Consensus       237 ~~~~--~l~~g~~dg~i~iwd~~~~~~~----------------------------------------~~~~~~~~~~~~  274 (308)
                      |+|+  +|++|+.||+|++||+......                                        ...+..+.+|..
T Consensus       405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~  484 (524)
T 2j04_B          405 VSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGI  484 (524)
T ss_dssp             CCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCC
T ss_pred             eCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCc
Confidence            9999  8999999999999985321000                                        012234456788


Q ss_pred             CeEE-EEecCCC---eEEEee-ceEEEEee
Q 021744          275 SNRA-HFSRDVT---SLLGSV-SFIMFIGQ  299 (308)
Q Consensus       275 ~v~~-~~s~d~~---~l~~s~-s~~i~~~~  299 (308)
                      .|.+ +|+|++.   +++++. +..|.++.
T Consensus       485 ~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~  514 (524)
T 2j04_B          485 NITCTKWNETSAGGKCYAFSNSAGLLTLEY  514 (524)
T ss_dssp             SCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred             eEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence            8888 9999964   666555 45565554

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.3e-33  Score=245.12  Aligned_cols=261  Identities=10%  Similarity=0.063  Sum_probs=209.1

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecC----C---Ce-eeccCCCcEEEEECCC
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANN----T---WG-RNNNFNNHSNNYRAGN   96 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~----g---~~-~s~~~d~~i~vwd~~~   96 (308)
                      .+|++++.|++|++|+.........      .+....+.+|...  +++|+|+    +   .+ ++++.|++|++||+.+
T Consensus        27 ~~l~s~~~dg~i~iw~~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~  100 (397)
T 1sq9_A           27 SFTVSCSGDGYLKVWDNKLLDNENP------KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR  100 (397)
T ss_dssp             SEEEEEETTSEEEEEESBCCTTCCG------GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEE
T ss_pred             CeEEEEcCCCEEEEEECCCcccccC------CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccC
Confidence            6899999999999999887621000      0112233467666  8999999    8   88 9999999999999987


Q ss_pred             CCCc----cccccee-----eeeeeeeeee----cCCc--eEEeeCCCeEEEEEcCC------Cceeee-----Ee----
Q 021744           97 SKNS----NINNRAV-----IKTDILCRNW----VQGN--CMYGEKCKFLHSWTVGD------GFKLLT-----QL----  146 (308)
Q Consensus        97 ~~~~----~~~~~~~-----~~~~~~~~~~----~~~~--~~~g~~d~~i~iwd~~~------~~~~~~-----~~----  146 (308)
                      ++..    ......|     ...+..+.|+    +++.  +++++.|+.|++||+.+      . +.+.     .+    
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~  179 (397)
T 1sq9_A          101 EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS-LTLNWSPTLELQGTV  179 (397)
T ss_dssp             CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH-TTTCCCCEEEEEEEE
T ss_pred             CcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc-ceeeccCcceeeeee
Confidence            6641    1233344     4669999999    8885  57888999999999988      5 4444     66    


Q ss_pred             ---eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC-------CCeeEEE--EcCCCEEEEEc-C---C
Q 021744          147 ---EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-------GGEVGCM--ISEGPWIFIGV-T---N  210 (308)
Q Consensus       147 ---~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~-------~~~v~~~--~~~~~~l~~~~-d---~  210 (308)
                         ..|...|.+++|+|++ ++++++.|+.|++||+++++.+..+..       ...+.++  .+++++|++++ |   +
T Consensus       180 ~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g  258 (397)
T 1sq9_A          180 ESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG  258 (397)
T ss_dssp             CCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEE
T ss_pred             ccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCc
Confidence               3488999999999999 999999999999999999999988885       7777776  47889999876 7   8


Q ss_pred             cEEEEEcCCCcee-eeeC-------------CCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecc----
Q 021744          211 FVKAWNTQTNTDL-SLSG-------------PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK----  270 (308)
Q Consensus       211 ~i~~wd~~~~~~~-~~~~-------------~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~----  270 (308)
                      .|++||+++++.. .+..             |...|.+++|+|+  +|++++.||.|++||++++    +++..+.    
T Consensus       259 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~  334 (397)
T 1sq9_A          259 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK----ERITTLNMHCD  334 (397)
T ss_dssp             EEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----EEEEEEECCGG
T ss_pred             eEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC----ceeEEEecccC
Confidence            9999999998877 6777             8999999999998  9999999999999999987    6777777    


Q ss_pred             --cc---------------CCCeEE-EEecCC----------CeEEEee-ceEEEEee
Q 021744          271 --VH---------------TDSNRA-HFSRDV----------TSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       271 --~~---------------~~~v~~-~~s~d~----------~~l~~s~-s~~i~~~~  299 (308)
                        .|               ...|.+ +|+|++          .+|++++ +..|.++.
T Consensus       335 ~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          335 DIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             GCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             cccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence              77               899999 999998          6777555 55555554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-33  Score=248.57  Aligned_cols=261  Identities=11%  Similarity=0.084  Sum_probs=195.4

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCC-CCccccccc--eeEEecCCCe-eeccCCCcEEEEECC---CC
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLP-PAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAG---NS   97 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~-~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~---~~   97 (308)
                      .+.+||+++.|++|++||.......        .... ....+|...  +++|+|++.+ ++++.|++|++||++   ++
T Consensus        75 ~~~~l~s~s~dg~v~vwd~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~  146 (437)
T 3gre_A           75 ETPYLITGSDQGVIKIWNLKEIIVG--------EVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQE  146 (437)
T ss_dssp             SSCEEEEEETTSEEEEEEHHHHHTT--------CCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEET
T ss_pred             CCCEEEEecCCceEEEeECcccccC--------cccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCC
Confidence            4679999999999999998762000        1111 111146666  8999999999 999999999999994   33


Q ss_pred             CCcccccce-----------eeeeeeeee--eecCCce-EEeeCCCeEEEEEcCCCceeeeEeeC--cccceEEEEEeCC
Q 021744           98 KNSNINNRA-----------VIKTDILCR--NWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG--HQKVVSGITLPSG  161 (308)
Q Consensus        98 ~~~~~~~~~-----------~~~~~~~~~--~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~--h~~~v~~~~~~~~  161 (308)
                      +........           +...+.++.  +.+++.. ++++.|+.|++||++++ +.+..+.+  |...|++++|+|+
T Consensus       147 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~s~~  225 (437)
T 3gre_A          147 SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL-ERLQIIENSPRHGAVSSICIDEE  225 (437)
T ss_dssp             TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC-CEEEEEECCGGGCCEEEEEECTT
T ss_pred             ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-eeeEEEccCCCCCceEEEEECCC
Confidence            322110000           112233333  3355655 88999999999999998 78888988  8999999999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCeEEEEEe--CCCeeEEEE------cCCCEEEEEc-CCcEEEEEcCCCcee-eeeC----
Q 021744          162 SDKLYSGSKDETVRVWDCASGQCAGVIN--LGGEVGCMI------SEGPWIFIGV-TNFVKAWNTQTNTDL-SLSG----  227 (308)
Q Consensus       162 ~~~l~s~s~dg~v~~wd~~~~~~~~~~~--~~~~v~~~~------~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~----  227 (308)
                      +.+|++++.||+|++||+++++++..+.  +...+.++.      +++++|++++ |+.|++||+++++.. .+.+    
T Consensus       226 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  305 (437)
T 3gre_A          226 CCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQ  305 (437)
T ss_dssp             SCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSC
T ss_pred             CCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCC
Confidence            9999999999999999999999999885  556777762      3566888887 899999999988765 3332    


Q ss_pred             ----------------------CCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccc-------------
Q 021744          228 ----------------------PVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKV-------------  271 (308)
Q Consensus       228 ----------------------~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-------------  271 (308)
                                            |...|++++|++. +|++|+.|+.|++||+.++    +.+..+.+             
T Consensus       306 ~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~  381 (437)
T 3gre_A          306 PSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNEL----SSSKAVISPSRFSDVFIPTQV  381 (437)
T ss_dssp             CCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCG----GGCEEEECC--CCCEEEEEEE
T ss_pred             CccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCc----ccceEEecccccCceEEEEEe
Confidence                                  5566899999966 9999999999999999987    44444433             


Q ss_pred             ------------------------cCCCeEE-EEecC--CCeEEEee-ceEEEEe
Q 021744          272 ------------------------HTDSNRA-HFSRD--VTSLLGSV-SFIMFIG  298 (308)
Q Consensus       272 ------------------------~~~~v~~-~~s~d--~~~l~~s~-s~~i~~~  298 (308)
                                              |...|.+ +|+++  +.+|+++. +..|.++
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw  436 (437)
T 3gre_A          382 TANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF  436 (437)
T ss_dssp             ETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEE
T ss_pred             ecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEe
Confidence                                    8889999 99988  66666544 5555554

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.4e-33  Score=239.56  Aligned_cols=235  Identities=14%  Similarity=0.155  Sum_probs=187.8

Q ss_pred             cccccc-c--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc--ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEc
Q 021744           64 ATANGA-A--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI--NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTV  136 (308)
Q Consensus        64 ~~gh~~-~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~  136 (308)
                      +.+|.. .  .++|+|+|.+ |+|+.|++|+|||++++.....  ...+|...+..+.|+|++.. ++|+.|+.|++|++
T Consensus        11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~   90 (345)
T 3fm0_A           11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK   90 (345)
T ss_dssp             ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEc
Confidence            446665 3  8999999999 9999999999999976643221  23567778999999999976 89999999999999


Q ss_pred             CCCc-eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCe---EEEEEe-CCCeeEEE--EcCCCEEEEEc-
Q 021744          137 GDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ---CAGVIN-LGGEVGCM--ISEGPWIFIGV-  208 (308)
Q Consensus       137 ~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~---~~~~~~-~~~~v~~~--~~~~~~l~~~~-  208 (308)
                      .+.. +.+..+.+|...|.+++|+|++++|++++.|++|++||+++++   ++..+. +...+.++  .|++++|++++ 
T Consensus        91 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~  170 (345)
T 3fm0_A           91 NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASY  170 (345)
T ss_dssp             CCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET
T ss_pred             cCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC
Confidence            8663 4577889999999999999999999999999999999998764   344444 66777766  47888888776 


Q ss_pred             CCcEEEEEcCCCcee---eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCc-----------ccccceeccc-
Q 021744          209 TNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN-----------CFEPAASLKV-  271 (308)
Q Consensus       209 d~~i~~wd~~~~~~~---~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~-----------~~~~~~~~~~-  271 (308)
                      |+.|++||+++++..   .+.+|...|++++|+|+  +|++++.|+.|++||......           ..+++..+.+ 
T Consensus       171 d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (345)
T 3fm0_A          171 DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF  250 (345)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSS
T ss_pred             CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCC
Confidence            999999999887533   68899999999999999  999999999999999754321           0122334443 


Q ss_pred             cCCCeEE-EEecCCCeEEEee-ceEEEEe
Q 021744          272 HTDSNRA-HFSRDVTSLLGSV-SFIMFIG  298 (308)
Q Consensus       272 ~~~~v~~-~~s~d~~~l~~s~-s~~i~~~  298 (308)
                      |...|.. +|+|++..|++++ +..+.++
T Consensus       251 h~~~v~~v~~~~~~~~l~s~~~d~~i~vw  279 (345)
T 3fm0_A          251 HSRTIYDIAWCQLTGALATACGDDAIRVF  279 (345)
T ss_dssp             CSSCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             CCCcEEEEEEecCCCEEEEEeCCCeEEEE
Confidence            8889999 9999999988665 4444433

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.8e-33  Score=243.45  Aligned_cols=230  Identities=14%  Similarity=0.228  Sum_probs=187.0

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCC-e-eeccCCCcEEEEECCCCCCc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTW-G-RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~-~-~s~~~d~~i~vwd~~~~~~~  100 (308)
                      .+.++|+++.|++|++|+.......     ....+....+.+|...  ++.|.|++. . ++|+.|++|++||+.+++.+
T Consensus       119 ~g~~las~~~d~~v~iw~~~~~~~~-----~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~  193 (380)
T 3iz6_a          119 NGQSVACGGLDSACSIFNLSSQADR-----DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI  193 (380)
T ss_dssp             TSSEEEECCSSSCCEEEECCCCSSC-----CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE
T ss_pred             CCCEEEEeeCCCcEEEEECCCCccc-----cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE
Confidence            3678999999999999998754110     0112334456788877  788998754 4 99999999999999888654


Q ss_pred             ccc----cceeeeeeeeeeeec-CCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcE
Q 021744          101 NIN----NRAVIKTDILCRNWV-QGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETV  174 (308)
Q Consensus       101 ~~~----~~~~~~~~~~~~~~~-~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v  174 (308)
                      ...    ...|...+..+.+.+ ++.. ++|+.|+.|++||++...+.+..+.+|...|.+++|+|++++|++++.|++|
T Consensus       194 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i  273 (380)
T 3iz6_a          194 SIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC  273 (380)
T ss_dssp             EEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCE
T ss_pred             EEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeE
Confidence            322    245666788888876 5544 8999999999999985446788999999999999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEeCCC--------eeEE--EEcCCCEEEEEc-CCcEEEEEcCCCcee-ee----eCCCCCEEEEEEe
Q 021744          175 RVWDCASGQCAGVINLGG--------EVGC--MISEGPWIFIGV-TNFVKAWNTQTNTDL-SL----SGPVGQVYAMAVG  238 (308)
Q Consensus       175 ~~wd~~~~~~~~~~~~~~--------~v~~--~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~----~~~~~~v~~~~~~  238 (308)
                      ++||+++++++..+....        .+.+  +.+++++|++|+ |+.|++||+.+++.. .+    .+|...|++++|+
T Consensus       274 ~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s  353 (380)
T 3iz6_a          274 RLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS  353 (380)
T ss_dssp             EEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC
T ss_pred             EEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC
Confidence            999999999998886221        1333  358899999887 999999999988776 44    5799999999999


Q ss_pred             CC--EEEEEcCCCeEEEEEcCCC
Q 021744          239 ND--LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       239 ~~--~l~~g~~dg~i~iwd~~~~  259 (308)
                      |+  +|++|+.|+.|++|++...
T Consensus       354 ~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          354 SDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             SSSSEEEEECTTSCEEEEECCSS
T ss_pred             CCCCEEEEeeCCCCEEEEecCCC
Confidence            99  9999999999999999875

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=6.3e-33  Score=236.78  Aligned_cols=231  Identities=12%  Similarity=0.132  Sum_probs=182.5

Q ss_pred             Cccccccc--eeEE-----ec-CCCe-eeccCCCcEEEEECCCCCCc------ccccceeeeeeeeeeeecCCce-EEee
Q 021744           63 AATANGAA--AKRF-----AN-NTWG-RNNNFNNHSNNYRAGNSKNS------NINNRAVIKTDILCRNWVQGNC-MYGE  126 (308)
Q Consensus        63 ~~~gh~~~--~i~~-----s~-~g~~-~s~~~d~~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~g~  126 (308)
                      .+.||...  +++|     ++ ++.+ ++|+.|++|++||+...+..      .....+|...+..+.|++++.. ++++
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s   95 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS   95 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred             eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEc
Confidence            45688887  8888     66 8888 99999999999999754321      1234567777999999999976 8999


Q ss_pred             CCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEE---eCCCeeEEE--EcCC
Q 021744          127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI---NLGGEVGCM--ISEG  201 (308)
Q Consensus       127 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~---~~~~~v~~~--~~~~  201 (308)
                      .|+.|++||++++ +.+..+.+|...|.+++|+|++++|++++.|++|++||+.........   .+...+.++  .+++
T Consensus        96 ~D~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (343)
T 2xzm_R           96 WDKTLRLWDLRTG-TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIM  174 (343)
T ss_dssp             TTSEEEEEETTSS-CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCC
T ss_pred             CCCcEEEEECCCC-cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccc
Confidence            9999999999998 788899999999999999999999999999999999999844333222   245566666  2443


Q ss_pred             ----------CEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCccccccee
Q 021744          202 ----------PWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAAS  268 (308)
Q Consensus       202 ----------~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~  268 (308)
                                .++++++ |+.|++||........+.+|...|.+++|+|+  +|++|+.||.|++||+....   .+...
T Consensus       175 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~---~~~~~  251 (343)
T 2xzm_R          175 KSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT---YPQRE  251 (343)
T ss_dssp             CSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS---SCSEE
T ss_pred             ccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc---cccee
Confidence                      6788766 99999999554444478899999999999999  99999999999999996532   33333


Q ss_pred             ccccCCCeEE-EEecCCCeEEEeeceEEEEe
Q 021744          269 LKVHTDSNRA-HFSRDVTSLLGSVSFIMFIG  298 (308)
Q Consensus       269 ~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~~  298 (308)
                      + .+...+.+ +|+|++.+++++.+..+.++
T Consensus       252 ~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw  281 (343)
T 2xzm_R          252 F-DAGSTINQIAFNPKLQWVAVGTDQGVKIF  281 (343)
T ss_dssp             E-ECSSCEEEEEECSSSCEEEEEESSCEEEE
T ss_pred             e-cCCCcEEEEEECCCCCEEEEECCCCEEEE
Confidence            3 34556888 99999998887764444444

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1e-32  Score=239.82  Aligned_cols=232  Identities=20%  Similarity=0.323  Sum_probs=188.6

Q ss_pred             ccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccc-----------------eeeeeeeeeeeecCCce-EE
Q 021744           66 ANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNR-----------------AVIKTDILCRNWVQGNC-MY  124 (308)
Q Consensus        66 gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~-~~  124 (308)
                      +|...  +++|+|+|++ |+|+ |+++++|++.+++.+.....                 .+...+.++.|+|++.. ++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            46666  8999999999 7765 78999999987764322111                 01113788999999976 88


Q ss_pred             eeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--Ec-CC
Q 021744          125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--IS-EG  201 (308)
Q Consensus       125 g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~-~~  201 (308)
                      |+.|+.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|++|++||++++++...+.+...+.++  .+ ++
T Consensus       141 ~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (393)
T 1erj_A          141 GAEDRLIRIWDIENR-KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG  219 (393)
T ss_dssp             EETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC
T ss_pred             EcCCCeEEEEECCCC-cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCC
Confidence            999999999999998 788899999999999999999999999999999999999999999888877766665  35 78


Q ss_pred             CEEEEEc-CCcEEEEEcCCCcee-ee-------eCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCc--------c
Q 021744          202 PWIFIGV-TNFVKAWNTQTNTDL-SL-------SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN--------C  262 (308)
Q Consensus       202 ~~l~~~~-d~~i~~wd~~~~~~~-~~-------~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~--------~  262 (308)
                      +++++++ |+.|++||+++++.. .+       .+|...|.+++|+|+  +|++|+.|+.|++||+++...        .
T Consensus       220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~  299 (393)
T 1erj_A          220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS  299 (393)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC
Confidence            8998877 999999999998766 33       578999999999999  999999999999999986421        0


Q ss_pred             cccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          263 FEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       263 ~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      ..+...+.+|...|.+ +|+|++.+|++++ +..|.++.
T Consensus       300 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd  338 (393)
T 1erj_A          300 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD  338 (393)
T ss_dssp             -CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred             CcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            1234567789999999 9999999998665 66666655

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.8e-32  Score=229.34  Aligned_cols=235  Identities=13%  Similarity=0.044  Sum_probs=183.7

Q ss_pred             ccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCC-CcccccceeeeeeeeeeeecC--Cce-EEeeCCCeEEEEEc
Q 021744           64 ATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSK-NSNINNRAVIKTDILCRNWVQ--GNC-MYGEKCKFLHSWTV  136 (308)
Q Consensus        64 ~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~-~~g~~d~~i~iwd~  136 (308)
                      +.+|...  +++|+|+|++ |+|+.|++|+|||++... .......+|...+..+.|+++  +.. ++++.|++|++||+
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~   84 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE   84 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence            4577777  8999999999 999999999999996532 222345678888999999763  554 89999999999999


Q ss_pred             CCCc-eeeeEeeCcccceEEEEEeCC--CCEEEEeeCCCcEEEEeCCCCeE--EEEEe-CCCeeEEE--EcC--------
Q 021744          137 GDGF-KLLTQLEGHQKVVSGITLPSG--SDKLYSGSKDETVRVWDCASGQC--AGVIN-LGGEVGCM--ISE--------  200 (308)
Q Consensus       137 ~~~~-~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~dg~v~~wd~~~~~~--~~~~~-~~~~v~~~--~~~--------  200 (308)
                      .++. ..+..+.+|...|.+++|+|+  +.+|++++.|++|++||++++..  ...+. |...+.++  .|+        
T Consensus        85 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~  164 (297)
T 2pm7_B           85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH  164 (297)
T ss_dssp             SSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-------
T ss_pred             CCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccC
Confidence            8762 356678889999999999997  78999999999999999987632  23333 66677665  233        


Q ss_pred             -----CCEEEEEc-CCcEEEEEcCCCc----ee-eeeCCCCCEEEEEEeCC-----EEEEEcCCCeEEEEEcCCCCcccc
Q 021744          201 -----GPWIFIGV-TNFVKAWNTQTNT----DL-SLSGPVGQVYAMAVGND-----LLFAGTQDGAILAWKFNVTTNCFE  264 (308)
Q Consensus       201 -----~~~l~~~~-d~~i~~wd~~~~~----~~-~~~~~~~~v~~~~~~~~-----~l~~g~~dg~i~iwd~~~~~~~~~  264 (308)
                           +++|++++ |++|++||+++++    .. .+.+|...|.+++|+|+     +|++++.|++|++||++..... .
T Consensus       165 ~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~-~  243 (297)
T 2pm7_B          165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP-W  243 (297)
T ss_dssp             -----CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC-C
T ss_pred             CCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc-c
Confidence                 46888776 9999999998765    33 67899999999999994     8999999999999999874210 0


Q ss_pred             cceec--cccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          265 PAASL--KVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       265 ~~~~~--~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      ....+  ..|...+.. +|+|++++|++++ +..|.++.
T Consensus       244 ~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~  282 (297)
T 2pm7_B          244 KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (297)
T ss_dssp             EEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred             ceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            11222  467888998 9999999998665 44444444

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=8.2e-34  Score=249.94  Aligned_cols=273  Identities=13%  Similarity=0.090  Sum_probs=198.7

Q ss_pred             eeEEEeecCCCCCCCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEec-CCCe-eeccC
Q 021744           10 KRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFAN-NTWG-RNNNF   85 (308)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~-~g~~-~s~~~   85 (308)
                      .||..-..+|    ..+.+||+|+.|++|+|||....+          .+......+|...  +++|+| ++.+ ++|+.
T Consensus       120 ~~V~~l~~~P----~~~~~lasGs~dg~i~lWd~~~~~----------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~  185 (435)
T 4e54_B          120 RRATSLAWHP----THPSTVAVGSKGGDIMLWNFGIKD----------KPTFIKGIGAGGSITGLKFNPLNTNQFYASSM  185 (435)
T ss_dssp             SCEEEEEECS----SCTTCEEEEETTSCEEEECSSCCS----------CCEEECCCSSSCCCCEEEECSSCTTEEEEECS
T ss_pred             CCEEEEEEeC----CCCCEEEEEeCCCEEEEEECCCCC----------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeC
Confidence            3454444444    234689999999999999987651          1222345678877  899998 5777 99999


Q ss_pred             CCcEEEEECCCCCCccc-ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCC
Q 021744           86 NNHSNNYRAGNSKNSNI-NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD  163 (308)
Q Consensus        86 d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~  163 (308)
                      |++|++||+++...... ....+...+.++.|++++.. ++|+.|+.|++||++..  .+..+.+|...|.+++|+|++.
T Consensus       186 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~  263 (435)
T 4e54_B          186 EGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCD  263 (435)
T ss_dssp             SSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCS
T ss_pred             CCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCc
Confidence            99999999975532211 11112223677889999976 88999999999999754  5678899999999999999875


Q ss_pred             -EEEEeeCCCcEEEEeCCCCeEEEEE----eCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCC----
Q 021744          164 -KLYSGSKDETVRVWDCASGQCAGVI----NLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVG----  230 (308)
Q Consensus       164 -~l~s~s~dg~v~~wd~~~~~~~~~~----~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~----  230 (308)
                       ++++++.|++|++||+++.+....+    .|...+.++  .+++++|++++ |+.|++||+++++.. .+..|..    
T Consensus       264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~  343 (435)
T 4e54_B          264 WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQ  343 (435)
T ss_dssp             SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCS
T ss_pred             eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccc
Confidence             6889999999999999987654433    267778776  47899999876 999999999988755 4444332    


Q ss_pred             --CEEEEEEeCC--EEEEE------------cCCCeEEEEEcCCCCcccccceec-cccCCCeEE--EEecCCCeEEEee
Q 021744          231 --QVYAMAVGND--LLFAG------------TQDGAILAWKFNVTTNCFEPAASL-KVHTDSNRA--HFSRDVTSLLGSV  291 (308)
Q Consensus       231 --~v~~~~~~~~--~l~~g------------~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~--~~s~d~~~l~~s~  291 (308)
                        .+....|+|+  .++++            ..++.|++||..++    +.+..+ .+|...|.+  +|+|+|.+|+++.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g----~~~~~l~~~~~~~v~s~~~fspdg~~lasg~  419 (435)
T 4e54_B          344 HLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG----KMMCQLYDPESSGISSLNEFNPMGDTLASAM  419 (435)
T ss_dssp             SSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC----CEEEEECCSSCCCCCCEEEECTTSSCEEEEC
T ss_pred             cceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC----cEEEEEeCCCCCcEEEEEEECCCCCEEEEEc
Confidence              2233455554  33333            34568999999987    555554 467777765  7999999999777


Q ss_pred             ceEEEEeecCc
Q 021744          292 SFIMFIGQNNK  302 (308)
Q Consensus       292 s~~i~~~~~~~  302 (308)
                      +..|.+|.-..
T Consensus       420 d~~i~iW~~~~  430 (435)
T 4e54_B          420 GYHILIWSQQE  430 (435)
T ss_dssp             SSEEEECCCC-
T ss_pred             CCcEEEEECCc
Confidence            77777776444

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=4.6e-33  Score=242.61  Aligned_cols=263  Identities=14%  Similarity=0.150  Sum_probs=206.0

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEec-CCCe-eeccCCCcEEEEECCCCCC---
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFAN-NTWG-RNNNFNNHSNNYRAGNSKN---   99 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~-~g~~-~s~~~d~~i~vwd~~~~~~---   99 (308)
                      .++++++.|+.|++|+.....+.        ......+.+|...  +++|+| ++.+ ++|+.|++|++||+.+++.   
T Consensus        48 ~~~~~~~~~g~i~v~~~~~~~~~--------~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~  119 (402)
T 2aq5_A           48 ALICEASGGGAFLVLPLGKTGRV--------DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP  119 (402)
T ss_dssp             EEEBCCSSSCCEEEEETTCCEEC--------CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC
T ss_pred             EEEEEEcCCCEEEEEECccCCCC--------CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc
Confidence            35556899999999998654110        1223345688877  899999 8888 9999999999999987642   


Q ss_pred             ---cccccceeeeeeeeeeeecCC-ce-EEeeCCCeEEEEEcCCCceeeeEe--eCcccceEEEEEeCCCCEEEEeeCCC
Q 021744          100 ---SNINNRAVIKTDILCRNWVQG-NC-MYGEKCKFLHSWTVGDGFKLLTQL--EGHQKVVSGITLPSGSDKLYSGSKDE  172 (308)
Q Consensus       100 ---~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~d~~i~iwd~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~s~dg  172 (308)
                         .......|...+..+.|+|++ .. ++++.|+.|++||+.++ +.+..+  .+|...|.+++|+|++++|++++.|+
T Consensus       120 ~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  198 (402)
T 2aq5_A          120 LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK  198 (402)
T ss_dssp             BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT-EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTS
T ss_pred             cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC-CccEEEecCCCCCceEEEEECCCCCEEEEEecCC
Confidence               122345677779999999997 34 88999999999999998 788888  78999999999999999999999999


Q ss_pred             cEEEEeCCCCeEEEEE-e-CCCe-eEE--EEcCCCEEEEE---c-CCcEEEEEcCCCce-e--eeeCCCCCEEEEEEeCC
Q 021744          173 TVRVWDCASGQCAGVI-N-LGGE-VGC--MISEGPWIFIG---V-TNFVKAWNTQTNTD-L--SLSGPVGQVYAMAVGND  240 (308)
Q Consensus       173 ~v~~wd~~~~~~~~~~-~-~~~~-v~~--~~~~~~~l~~~---~-d~~i~~wd~~~~~~-~--~~~~~~~~v~~~~~~~~  240 (308)
                      .|++||+++++.+..+ . +... +.+  +.+++++|++|   + |+.|++||+++.+. .  ....+...+.+++|+|+
T Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  278 (402)
T 2aq5_A          199 RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPD  278 (402)
T ss_dssp             EEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETT
T ss_pred             cEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCC
Confidence            9999999999999888 3 4433 333  35788888887   4 88999999998764 2  23356778999999999


Q ss_pred             --EE-EEEcCCCeEEEEEcCCCCcccccceeccc--cCCCeEE-EEecCCCeEEEee-ceEEEEeecC
Q 021744          241 --LL-FAGTQDGAILAWKFNVTTNCFEPAASLKV--HTDSNRA-HFSRDVTSLLGSV-SFIMFIGQNN  301 (308)
Q Consensus       241 --~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~~~  301 (308)
                        +| ++|+.||.|++||+.+++.   .+..+..  |...+.+ +|+|++.+++++. .+.+|.+..+
T Consensus       279 ~~~l~~~g~~dg~i~i~d~~~~~~---~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~~  343 (402)
T 2aq5_A          279 TNIVYLCGKGDSSIRYFEITSEAP---FLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHER  343 (402)
T ss_dssp             TTEEEEEETTCSCEEEEEECSSTT---CEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEETT
T ss_pred             CCEEEEEEcCCCeEEEEEecCCCc---ceEeecccccCCcccceEEecccccceecceeEEEEEcCCC
Confidence              55 5677899999999998732   1333333  5588888 9999999887544 5666666653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2e-32  Score=242.75  Aligned_cols=254  Identities=15%  Similarity=0.184  Sum_probs=208.1

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      +.++++++.|++|++||..++           . ....+.+|...  +++|+|++ . ++|+.|++|++||+.+++... 
T Consensus       132 ~~~l~sgs~dg~i~vwd~~~~-----------~-~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~-  197 (464)
T 3v7d_B          132 DNYVITGADDKMIRVYDSINK-----------K-FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTH-  197 (464)
T ss_dssp             TTEEEEEETTSCEEEEETTTT-----------E-EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEE-
T ss_pred             CCEEEEEcCCCcEEEEECCCC-----------c-EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEE-
Confidence            568999999999999998876           1 12234577777  89999998 6 999999999999998876542 


Q ss_pred             ccceeeeeeeeeeeec--CCce-EEeeCCCeEEEEEcCCCce----------------------eeeEeeCcccceEEEE
Q 021744          103 NNRAVIKTDILCRNWV--QGNC-MYGEKCKFLHSWTVGDGFK----------------------LLTQLEGHQKVVSGIT  157 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~--~~~~-~~g~~d~~i~iwd~~~~~~----------------------~~~~~~~h~~~v~~~~  157 (308)
                      ....|...+.++.+.+  ++.. ++++.|+.|++||+.+...                      .+..+.+|...|.++ 
T Consensus       198 ~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-  276 (464)
T 3v7d_B          198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV-  276 (464)
T ss_dssp             EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE-
T ss_pred             EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE-
Confidence            3345777788888885  4444 8999999999999987631                      255678899988887 


Q ss_pred             EeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCE
Q 021744          158 LPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQV  232 (308)
Q Consensus       158 ~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v  232 (308)
                       +++++++++++.|+.|++||+++++++..+. +...+.++  .++++++++++ |+.|++||+++++.+ .+.+|...|
T Consensus       277 -~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v  355 (464)
T 3v7d_B          277 -SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV  355 (464)
T ss_dssp             -EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             -cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcE
Confidence             5668899999999999999999999999887 67777766  57889999877 999999999999888 788999999


Q ss_pred             EEEEEeCCEEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEEEeec
Q 021744          233 YAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMFIGQN  300 (308)
Q Consensus       233 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~~~~  300 (308)
                      .++++++.+|++++.||.|++||+.+.    ...... .+...+.. +|++++.+++++.+..+.++.-
T Consensus       356 ~~~~~~~~~l~s~s~dg~v~vwd~~~~----~~~~~~-~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~  419 (464)
T 3v7d_B          356 GLLRLSDKFLVSAAADGSIRGWDANDY----SRKFSY-HHTNLSAITTFYVSDNILVSGSENQFNIYNL  419 (464)
T ss_dssp             EEEEECSSEEEEEETTSEEEEEETTTC----CEEEEE-ECTTCCCEEEEEECSSEEEEEETTEEEEEET
T ss_pred             EEEEEcCCEEEEEeCCCcEEEEECCCC----ceeeee-cCCCCccEEEEEeCCCEEEEecCCeEEEEEC
Confidence            999999889999999999999999986    333333 35666777 9999999999877666666653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6e-33  Score=242.77  Aligned_cols=260  Identities=10%  Similarity=0.065  Sum_probs=202.4

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .+.+||+++.|+.|++||...+           . ....+.+|...  +++|+|++.+ ++++.|++|++||+.+++...
T Consensus       108 ~~~~l~~~~~dg~i~iwd~~~~-----------~-~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  175 (420)
T 3vl1_A          108 QMRRFILGTTEGDIKVLDSNFN-----------L-QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR  175 (420)
T ss_dssp             SSCEEEEEETTSCEEEECTTSC-----------E-EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE
T ss_pred             CCCEEEEEECCCCEEEEeCCCc-----------c-eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce
Confidence            4678999999999999998765           1 11223467666  8999999999 999999999999998876553


Q ss_pred             cccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeC---cccceE---------------------EE
Q 021744          102 INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG---HQKVVS---------------------GI  156 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~---h~~~v~---------------------~~  156 (308)
                       ....|...+..+.|+|++.. ++++.|+.|++||++++ +.+..+..   |...|.                     ++
T Consensus       176 -~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~  253 (420)
T 3vl1_A          176 -TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG-TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNL  253 (420)
T ss_dssp             -EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTT
T ss_pred             -EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC-ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccce
Confidence             34567778999999999976 89999999999999998 77777764   334444                     45


Q ss_pred             EEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe--CCCeeEEE--EcCCC-EEEEEc-CCcEEEEEcCCCce-e-eeeC-
Q 021744          157 TLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN--LGGEVGCM--ISEGP-WIFIGV-TNFVKAWNTQTNTD-L-SLSG-  227 (308)
Q Consensus       157 ~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~--~~~~v~~~--~~~~~-~l~~~~-d~~i~~wd~~~~~~-~-~~~~-  227 (308)
                      +|+|++++|++++.||.|++||+++++.+..+.  +...+.++  .++++ +|++++ |+.|++||+++++. . .+.. 
T Consensus       254 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~  333 (420)
T 3vl1_A          254 EFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN  333 (420)
T ss_dssp             CSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES
T ss_pred             EEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc
Confidence            557889999999999999999999998888776  55677766  46777 888776 89999999998754 3 5555 


Q ss_pred             CCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcc-----cccceeccccCCCeEE-EEecCCC---eEEEee-ceEEE
Q 021744          228 PVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNC-----FEPAASLKVHTDSNRA-HFSRDVT---SLLGSV-SFIMF  296 (308)
Q Consensus       228 ~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~v~~-~~s~d~~---~l~~s~-s~~i~  296 (308)
                      |...+.++.+.+. +|++++.|+.|++|++......     ......+..|...+.. +|+|+++   .+++.+ ...+.
T Consensus       334 ~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~  413 (420)
T 3vl1_A          334 EGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCA  413 (420)
T ss_dssp             TTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEE
T ss_pred             CCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEE
Confidence            7778999987766 9999999999999999874210     0122234577888988 9999999   555444 43443


Q ss_pred             Ee
Q 021744          297 IG  298 (308)
Q Consensus       297 ~~  298 (308)
                      ++
T Consensus       414 ~~  415 (420)
T 3vl1_A          414 LY  415 (420)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-33  Score=242.57  Aligned_cols=259  Identities=11%  Similarity=0.082  Sum_probs=210.5

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .+.+|++++.|+.|++|+....             ....+.+|...  +++|+|++.+ ++++.|+.|++||+.+++...
T Consensus       119 ~~~~l~~~~~dg~i~i~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  185 (425)
T 1r5m_A          119 DGNSIVTGVENGELRLWNKTGA-------------LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ  185 (425)
T ss_dssp             TSSEEEEEETTSCEEEEETTSC-------------EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCC-------------eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence            3678999999999999993322             11223456555  8999999999 999999999999998776543


Q ss_pred             cccceeeee---------------eeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEE
Q 021744          102 INNRAVIKT---------------DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY  166 (308)
Q Consensus       102 ~~~~~~~~~---------------~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  166 (308)
                      .. ..+...               +..+.+.+++.+++++.++.|++||+.++ +.+..+.+|...|.+++|+|++++|+
T Consensus       186 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~  263 (425)
T 1r5m_A          186 HF-ELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK-TPTGKLIGHHGPISVLEFNDTNKLLL  263 (425)
T ss_dssp             EE-CCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS-SCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred             Ee-eccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC-ceeeeeccCCCceEEEEECCCCCEEE
Confidence            21 222222               77888999988899999999999999998 78888899999999999999999999


Q ss_pred             EeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC-
Q 021744          167 SGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-  240 (308)
Q Consensus       167 s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~-  240 (308)
                      +++.|+.|++||+++++.+..+. +...+.++  .+++ ++++++ |+.|++||+++++.. .+..|...+.+++|+|+ 
T Consensus       264 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~  342 (425)
T 1r5m_A          264 SASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDG  342 (425)
T ss_dssp             EEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTS
T ss_pred             EEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCC
Confidence            99999999999999998888887 67777766  4667 777655 999999999999887 77889999999999999 


Q ss_pred             -EEEEEcCCCeEEEEEcCCCCc----------------ccccceeccccCC--CeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          241 -LLFAGTQDGAILAWKFNVTTN----------------CFEPAASLKVHTD--SNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       241 -~l~~g~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~~--~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                       +|++++.||.|++||+.+...                ..+++..+..|..  .|.. +|+|++++|++++ +..|.++.
T Consensus       343 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  422 (425)
T 1r5m_A          343 QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA  422 (425)
T ss_dssp             SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred             CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence             999999999999999987520                0016778888866  8999 9999999988555 55555543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=8.1e-34  Score=243.21  Aligned_cols=267  Identities=16%  Similarity=0.184  Sum_probs=206.6

Q ss_pred             CCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecC----CCe-eeccCCCcEEEEECCC
Q 021744           24 GGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANN----TWG-RNNNFNNHSNNYRAGN   96 (308)
Q Consensus        24 ~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~----g~~-~s~~~d~~i~vwd~~~   96 (308)
                      ++...+++++.++.|++|+..++....  .+.   .  .....|...  +++|+|+    +.+ ++|+.|++|++||+.+
T Consensus        32 ~~~~~~~~~~~~~~v~vw~~~~~~~~~--~~~---~--~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~  104 (366)
T 3k26_A           32 EGDPLVFATVGSNRVTLYECHSQGEIR--LLQ---S--YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT  104 (366)
T ss_dssp             TTSCEEEEEEETTEEEEEEECGGGCEE--EEE---E--EECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT
T ss_pred             CCCceEEEECCCCEEEEEEcCCCcEEE--eee---e--ccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh
Confidence            345667777777799999988651100  000   0  000113333  8999999    557 9999999999999988


Q ss_pred             CCCcccccceeeeeeeeeeeec-CCce-EEeeCCCeEEEEEcCCCceeeeEe---eCcccceEEEEEeCCCCEEEEeeCC
Q 021744           97 SKNSNINNRAVIKTDILCRNWV-QGNC-MYGEKCKFLHSWTVGDGFKLLTQL---EGHQKVVSGITLPSGSDKLYSGSKD  171 (308)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~g~~d~~i~iwd~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~s~d  171 (308)
                      ++... ....|...+..+.|+| ++.. ++++.|+.|++||+.++ +.+..+   .+|...|.+++|+|++++|++++.|
T Consensus       105 ~~~~~-~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  182 (366)
T 3k26_A          105 MQCIK-HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD-TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD  182 (366)
T ss_dssp             CCEEE-EEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT-EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ceEee-eecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC-eEEEEecccccccCceeEEEECCCCCEEEEecCC
Confidence            76543 3445777899999999 7765 88999999999999998 777777   6899999999999999999999999


Q ss_pred             CcEEEEeCCCCeEEEEEe-----------------------------CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCc
Q 021744          172 ETVRVWDCASGQCAGVIN-----------------------------LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNT  221 (308)
Q Consensus       172 g~v~~wd~~~~~~~~~~~-----------------------------~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~  221 (308)
                      +.|++||+++++.+..+.                             +...+.++...++++++++ |+.|++||+++.+
T Consensus       183 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~  262 (366)
T 3k26_A          183 HSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKME  262 (366)
T ss_dssp             SCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTT
T ss_pred             CCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCcc
Confidence            999999999876543322                             5666777754478888877 9999999998764


Q ss_pred             e--------------e-eeeCCCCCEEEEEEeCC----EEEEEcCCCeEEEEEcCCCCcccccceecccc--CCCeEE-E
Q 021744          222 D--------------L-SLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH--TDSNRA-H  279 (308)
Q Consensus       222 ~--------------~-~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~v~~-~  279 (308)
                      .              . .+..|...|++++|+|+    +|++|+.||.|++||+.++.........+..|  ...|.+ +
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~  342 (366)
T 3k26_A          263 DDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTS  342 (366)
T ss_dssp             CCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEE
T ss_pred             ccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEE
Confidence            3              3 67788889999999875    99999999999999999874322234467776  789999 9


Q ss_pred             EecCCCeEEEee-ceEEEEee
Q 021744          280 FSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       280 ~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      |+|++++|++++ +..|+++.
T Consensus       343 ~s~~~~~l~s~~~dg~i~iwd  363 (366)
T 3k26_A          343 FSRDSSILIAVCDDASIWRWD  363 (366)
T ss_dssp             ECTTSSEEEEEETTSEEEEEE
T ss_pred             eCCCCCeEEEEeCCCEEEEEE
Confidence            999999998666 66666665

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.6e-32  Score=227.70  Aligned_cols=231  Identities=20%  Similarity=0.286  Sum_probs=192.4

Q ss_pred             Cccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCC
Q 021744           63 AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGD  138 (308)
Q Consensus        63 ~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~  138 (308)
                      .+.+|...  +++|+|++++ ++++.|++|++|++.+++... ....|...+..+.|+|++.. ++++.|+.|++||+.+
T Consensus        18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~   96 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS   96 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch-hhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC
Confidence            34688877  8999999999 999999999999998775432 34567777999999999976 8899999999999999


Q ss_pred             CceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEE
Q 021744          139 GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKA  214 (308)
Q Consensus       139 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~  214 (308)
                      + +.+..+.+|...|.+++|+|++++|++++.|++|++||+++++.+..+. +..++.++  .++++++++++ |+.|++
T Consensus        97 ~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  175 (312)
T 4ery_A           97 G-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI  175 (312)
T ss_dssp             C-CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             C-cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence            8 7888999999999999999999999999999999999999999988887 66777766  47788888776 999999


Q ss_pred             EEcCCCcee-ee-eCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCe---EEEEe-cCCCe
Q 021744          215 WNTQTNTDL-SL-SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSN---RAHFS-RDVTS  286 (308)
Q Consensus       215 wd~~~~~~~-~~-~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v---~~~~s-~d~~~  286 (308)
                      ||+++++.. .+ ..+...+..++|+|+  +|++++.|+.|++||++++    +.+..+.+|....   ...++ +++.+
T Consensus       176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (312)
T 4ery_A          176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG----KCLKTYTGHKNEKYCIFANFSVTGGKW  251 (312)
T ss_dssp             EETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT----EEEEEECSSCCSSSCCCEEEECSSSCE
T ss_pred             EECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC----cEEEEEEecCCceEEEEEEEEeCCCcE
Confidence            999998876 33 456678999999999  9999999999999999987    6677777776543   33444 56777


Q ss_pred             EEEee-ceEEEEee
Q 021744          287 LLGSV-SFIMFIGQ  299 (308)
Q Consensus       287 l~~s~-s~~i~~~~  299 (308)
                      |++++ +..|.++.
T Consensus       252 l~sg~~dg~i~vwd  265 (312)
T 4ery_A          252 IVSGSEDNLVYIWN  265 (312)
T ss_dssp             EEECCTTSCEEEEE
T ss_pred             EEEECCCCEEEEEE
Confidence            77655 44444443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-33  Score=246.35  Aligned_cols=266  Identities=9%  Similarity=0.110  Sum_probs=206.2

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecC-CCe-eeccCCCcEEEEECCCCC--
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANN-TWG-RNNNFNNHSNNYRAGNSK--   98 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~-g~~-~s~~~d~~i~vwd~~~~~--   98 (308)
                      .+.+|++++.|+.|++|+.......        ......+.+|...  +++|+|+ +.+ ++++.|++|++||+.+++  
T Consensus        78 ~~~~l~~~~~dg~v~vw~~~~~~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  149 (416)
T 2pm9_A           78 NNKIIAGALDNGSLELYSTNEANNA--------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTES  149 (416)
T ss_dssp             SSSCEEEEESSSCEEEECCSSTTSC--------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSC
T ss_pred             CCCeEEEEccCCeEEEeeccccccc--------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccc
Confidence            3578999999999999998863100        1122234466666  8999998 777 999999999999998775  


Q ss_pred             ----Cccc--ccceeeeeeeeeeeecC-Cce-EEeeCCCeEEEEEcCCCceeeeEeeCc------ccceEEEEEeCCC-C
Q 021744           99 ----NSNI--NNRAVIKTDILCRNWVQ-GNC-MYGEKCKFLHSWTVGDGFKLLTQLEGH------QKVVSGITLPSGS-D  163 (308)
Q Consensus        99 ----~~~~--~~~~~~~~~~~~~~~~~-~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h------~~~v~~~~~~~~~-~  163 (308)
                          ....  ....|...+..+.|+++ +.. ++++.|+.|++||++++ +.+..+..|      ...|.+++|+|++ .
T Consensus       150 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (416)
T 2pm9_A          150 PSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK-KEVIHLSYTSPNSGIKQQLSVVEWHPKNST  228 (416)
T ss_dssp             TTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT-EEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred             cccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC-CcceEEeccccccccCCceEEEEECCCCCC
Confidence                2211  23456677999999998 444 88999999999999998 777787766      7899999999997 6


Q ss_pred             EEEEeeCCC---cEEEEeCCCC-eEEEEEe--CCCeeEEE--Ec-CCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCE
Q 021744          164 KLYSGSKDE---TVRVWDCASG-QCAGVIN--LGGEVGCM--IS-EGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQV  232 (308)
Q Consensus       164 ~l~s~s~dg---~v~~wd~~~~-~~~~~~~--~~~~v~~~--~~-~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v  232 (308)
                      ++++++.|+   .|++||++++ +++..+.  +...+.++  .+ ++++|++++ |+.|++||+++++.+ .+..|...|
T Consensus       229 ~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v  308 (416)
T 2pm9_A          229 RVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWC  308 (416)
T ss_dssp             EEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCC
T ss_pred             EEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCce
Confidence            899999999   9999999986 5666665  66777776  35 788888776 999999999999887 788999999


Q ss_pred             EEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccc-------------------------------eeccccCCCeEE
Q 021744          233 YAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPA-------------------------------ASLKVHTDSNRA  278 (308)
Q Consensus       233 ~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~-------------------------------~~~~~~~~~v~~  278 (308)
                      .+++|+|+   +|++++.|+.|++||+..........                               .....|..++..
T Consensus       309 ~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (416)
T 2pm9_A          309 FKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPA  388 (416)
T ss_dssp             CCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCC
T ss_pred             EEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccc
Confidence            99999996   89999999999999998763210000                               001115667767


Q ss_pred             -EEecCCCeEEEee-ceEEEEee
Q 021744          279 -HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       279 -~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                       +|+|||++|+++. +..|.+|.
T Consensus       389 ~~~s~dg~~la~~~~d~~v~~w~  411 (416)
T 2pm9_A          389 AHWAFGGKLVQITPDGKGVSITN  411 (416)
T ss_dssp             CEEETTTEEECBCTTSSCBCCBC
T ss_pred             eEEeeCCeEEEEeCCCCeEEEEE
Confidence             9999999998655 44444443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.1e-32  Score=228.91  Aligned_cols=223  Identities=11%  Similarity=0.093  Sum_probs=177.0

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecC--CCe-eeccCCCcEEEEECCCCCCc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANN--TWG-RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~--g~~-~s~~~d~~i~vwd~~~~~~~  100 (308)
                      +.+|||++.|++|++|+.....          ......+.+|...  +++|+|+  +.+ ++|+.|++|++||+++++..
T Consensus        21 g~~las~s~D~~v~iw~~~~~~----------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~   90 (297)
T 2pm7_B           21 GKRMATCSSDKTIKIFEVEGET----------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS   90 (297)
T ss_dssp             SSEEEEEETTSCEEEEEBCSSC----------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC
T ss_pred             CCEEEEEeCCCEEEEEecCCCC----------cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE
Confidence            6789999999999999986430          1223345688887  8999863  778 99999999999999876422


Q ss_pred             -ccccceeeeeeeeeeeecC--Cce-EEeeCCCeEEEEEcCCCc-eeeeEeeCcccceEEEEEeCC-------------C
Q 021744          101 -NINNRAVIKTDILCRNWVQ--GNC-MYGEKCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSG-------------S  162 (308)
Q Consensus       101 -~~~~~~~~~~~~~~~~~~~--~~~-~~g~~d~~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~~~~-------------~  162 (308)
                       ......|...+.++.|+|+  +.. ++++.|+.|++||+++.. .....+.+|...|.+++|+|+             +
T Consensus        91 ~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~  170 (297)
T 2pm7_B           91 QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES  170 (297)
T ss_dssp             CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------C
T ss_pred             EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCc
Confidence             1223456777999999997  544 899999999999998762 224567899999999999997             4


Q ss_pred             CEEEEeeCCCcEEEEeCCCCe----EEEEEe-CCCeeEEE--EcC---CCEEEEEc-CCcEEEEEcCCCc----eeee--
Q 021744          163 DKLYSGSKDETVRVWDCASGQ----CAGVIN-LGGEVGCM--ISE---GPWIFIGV-TNFVKAWNTQTNT----DLSL--  225 (308)
Q Consensus       163 ~~l~s~s~dg~v~~wd~~~~~----~~~~~~-~~~~v~~~--~~~---~~~l~~~~-d~~i~~wd~~~~~----~~~~--  225 (308)
                      ++|++|+.|++|++||+++++    .+..+. |...+.++  .|+   +.+|++++ |++|++||+++.+    ...+  
T Consensus       171 ~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~  250 (297)
T 2pm7_B          171 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKE  250 (297)
T ss_dssp             CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSS
T ss_pred             ceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeec
Confidence            689999999999999998765    445565 77788877  355   36788776 9999999998753    1122  


Q ss_pred             eCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCC
Q 021744          226 SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       226 ~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~  258 (308)
                      ..|...|.+++|+|+  +|++++.|+.|++|+...
T Consensus       251 ~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          251 EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             SCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             ccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            467889999999999  899999999999999874

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=7.9e-32  Score=236.21  Aligned_cols=256  Identities=17%  Similarity=0.206  Sum_probs=199.4

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      +++||.| .|++|+|||+.+++.          .......+|...  +++|+|+|.+ |+|+.|++|+|||+++++.+. 
T Consensus       116 ~n~lAvg-ld~tV~lWd~~tg~~----------~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~-  183 (420)
T 4gga_A          116 GNVLAVA-LDNSVYLWSASSGDI----------LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR-  183 (420)
T ss_dssp             TSEEEEE-ETTEEEEEETTTCCE----------EEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-
T ss_pred             CCEEEEE-eCCEEEEEECCCCCE----------EEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE-
Confidence            4566665 599999999998711          001122355555  8999999999 999999999999998886553 


Q ss_pred             ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744          103 NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~  181 (308)
                      ....|...+.++.+  ++.. ++|+.|+.+++||.......+..+.+|...+..+.++|++.++++++.|+.+++|+..+
T Consensus       184 ~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~  261 (420)
T 4gga_A          184 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  261 (420)
T ss_dssp             EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             EEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence            23445555655544  4444 88999999999999887677888999999999999999999999999999999999987


Q ss_pred             CeE----EEEEe-CCCeeEEE--EcC-CCEEEE--Ec-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEE--Ec
Q 021744          182 GQC----AGVIN-LGGEVGCM--ISE-GPWIFI--GV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFA--GT  246 (308)
Q Consensus       182 ~~~----~~~~~-~~~~v~~~--~~~-~~~l~~--~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~--g~  246 (308)
                      ++.    +.... +...+.++  ++. ..++++  |+ |++|++||+++++......+...+.++.|+|+  .+++  |+
T Consensus       262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~  341 (420)
T 4gga_A          262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF  341 (420)
T ss_dssp             CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECT
T ss_pred             ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEec
Confidence            653    23333 66677665  344 456554  33 89999999999998854445568999999998  5554  44


Q ss_pred             CCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          247 QDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       247 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      .|+.|++||+.++    +++.++.+|...|.+ +|+|||++|++++ +..|.+|.
T Consensus       342 ~d~~I~iwd~~~~----~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd  392 (420)
T 4gga_A          342 AQNQLVIWKYPTM----AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR  392 (420)
T ss_dssp             TTCCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             CCCEEEEEECCCC----cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            7999999999987    788999999999999 9999999999665 66666654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.4e-33  Score=235.80  Aligned_cols=237  Identities=13%  Similarity=0.072  Sum_probs=178.9

Q ss_pred             Cccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC-cccccceeeeeeeeeeeecC--C-ceEEeeCCCeEEEEE
Q 021744           63 AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN-SNINNRAVIKTDILCRNWVQ--G-NCMYGEKCKFLHSWT  135 (308)
Q Consensus        63 ~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~--~-~~~~g~~d~~i~iwd  135 (308)
                      .+.+|...  +++|+|+|++ |+|+.|++|+|||+.+++. ......+|...+..+.|+++  + .+++++.|+.|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            34578877  8999999999 9999999999999976642 22345678888999999753  4 459999999999999


Q ss_pred             cCCCc-eeeeEeeCcccceEEEEEeCC--CCEEEEeeCCCcEEEEeCCCCeEEE---EEe-CCCeeEEE--EcC------
Q 021744          136 VGDGF-KLLTQLEGHQKVVSGITLPSG--SDKLYSGSKDETVRVWDCASGQCAG---VIN-LGGEVGCM--ISE------  200 (308)
Q Consensus       136 ~~~~~-~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~dg~v~~wd~~~~~~~~---~~~-~~~~v~~~--~~~------  200 (308)
                      ++++. +....+.+|...|.+++|+|+  +.+|++++.|++|++||++.+....   .+. |...+.++  .++      
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            98762 356678899999999999997  7899999999999999998763221   111 44444443  233      


Q ss_pred             -----------CCEEEEEc-CCcEEEEEcCCC---cee-eeeCCCCCEEEEEEeCC------EEEEEcCCCeEEEEEcCC
Q 021744          201 -----------GPWIFIGV-TNFVKAWNTQTN---TDL-SLSGPVGQVYAMAVGND------LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       201 -----------~~~l~~~~-d~~i~~wd~~~~---~~~-~~~~~~~~v~~~~~~~~------~l~~g~~dg~i~iwd~~~  258 (308)
                                 +++|++++ |+.|++||++..   +.. .+.+|...|.+++|+|+      +|++++.|++|++|++.+
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence                       36788776 999999999865   233 67899999999999984      799999999999999986


Q ss_pred             CCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          259 TTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      ..........+..|...|.+ +|+|++++|++++ +..+.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~  290 (316)
T 3bg1_A          248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK  290 (316)
T ss_dssp             TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred             ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence            32101123445678899999 9999999998665 54454444

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.1e-32  Score=240.91  Aligned_cols=256  Identities=16%  Similarity=0.225  Sum_probs=206.3

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN  104 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~  104 (308)
                      +.++++|+.|++|++||..++            .....+.+|.....++..++.. ++|+.|++|++||+.+++... ..
T Consensus       143 ~~~l~~g~~dg~i~iwd~~~~------------~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~-~~  209 (435)
T 1p22_A          143 DQKIVSGLRDNTIKIWDKNTL------------ECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLN-TL  209 (435)
T ss_dssp             SSEEEEEESSSCEEEEESSSC------------CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEE-EE
T ss_pred             CCEEEEEeCCCeEEEEeCCCC------------eEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEE-EE
Confidence            678999999999999998876            1122345677663344448888 999999999999998886543 33


Q ss_pred             ceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCce--eeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744          105 RAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFK--LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (308)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~  182 (308)
                      ..|...+..+.+.+ +.+++++.|+.|++||+.++..  ....+.+|...|.+++|  +++++++++.|++|++||++++
T Consensus       210 ~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~  286 (435)
T 1p22_A          210 IHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC  286 (435)
T ss_dssp             CCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC
T ss_pred             cCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC
Confidence            45666788888763 4669999999999999988732  22678899999999999  5789999999999999999999


Q ss_pred             eEEEEEe-CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcCCC
Q 021744          183 QCAGVIN-LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       183 ~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~  259 (308)
                      +.+..+. +...+.++..+++++++|+ |+.|++||+++++.. .+.+|...|.++++.+.+|++|+.||.|++||+.++
T Consensus       287 ~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~  366 (435)
T 1p22_A          287 EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAA  366 (435)
T ss_dssp             CEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHH
T ss_pred             cEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCC
Confidence            9999988 7788888877888888776 999999999999887 788999999999996669999999999999999764


Q ss_pred             Ccc-----cccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          260 TNC-----FEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       260 ~~~-----~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      ...     ..++..+..|...|.+ +|  ++.+|++++ +..|.++.
T Consensus       367 ~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd  411 (435)
T 1p22_A          367 LDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  411 (435)
T ss_dssp             TSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             CCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence            210     0156778899999998 88  677777655 55555554

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=8.6e-32  Score=228.03  Aligned_cols=228  Identities=14%  Similarity=0.235  Sum_probs=191.5

Q ss_pred             ccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccc----eeeeeeeeeeeecCCce-EEeeCCCeEEEEEcC
Q 021744           66 ANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNR----AVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVG  137 (308)
Q Consensus        66 gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~  137 (308)
                      +|...  +++|+|++.+ ++++ |++|++||+.+++.......    .+...+..+.|+|++.. ++++.|+.|++||+.
T Consensus        49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~  127 (337)
T 1gxr_A           49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence            56555  8999999999 8888 99999999987653322221    45667999999999976 889999999999999


Q ss_pred             CCc-eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcE
Q 021744          138 DGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFV  212 (308)
Q Consensus       138 ~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i  212 (308)
                      ++. .....+..|...|.+++|+|+++++++++.|+.|++||+++++.+..+. +...+.++  .++++++++++ |+.|
T Consensus       128 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  207 (337)
T 1gxr_A          128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV  207 (337)
T ss_dssp             CC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcE
Confidence            872 2567788899999999999999999999999999999999999998887 67777766  46888888776 9999


Q ss_pred             EEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE
Q 021744          213 KAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG  289 (308)
Q Consensus       213 ~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~  289 (308)
                      ++||+++++......+...+.+++|+|+  ++++++.|+.|++||++++    + ...+..|...+.. +|+|++++|++
T Consensus       208 ~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~----~-~~~~~~~~~~v~~~~~~~~~~~l~~  282 (337)
T 1gxr_A          208 RSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP----D-KYQLHLHESCVLSLKFAYCGKWFVS  282 (337)
T ss_dssp             EEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS----C-EEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC----C-eEEEcCCccceeEEEECCCCCEEEE
Confidence            9999999988855568889999999999  9999999999999999985    2 3467789999999 99999999886


Q ss_pred             ee-ceEEEEee
Q 021744          290 SV-SFIMFIGQ  299 (308)
Q Consensus       290 s~-s~~i~~~~  299 (308)
                      ++ +..+.++.
T Consensus       283 ~~~dg~i~~~~  293 (337)
T 1gxr_A          283 TGKDNLLNAWR  293 (337)
T ss_dssp             EETTSEEEEEE
T ss_pred             ecCCCcEEEEE
Confidence            65 55555554

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=5.5e-33  Score=244.81  Aligned_cols=269  Identities=9%  Similarity=0.086  Sum_probs=198.3

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccc------------cc--eeEEecCC--Ce-eeccCCC
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANG------------AA--AKRFANNT--WG-RNNNFNN   87 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~------------~~--~i~~s~~g--~~-~s~~~d~   87 (308)
                      .+.+||+|+.|+.|++|+............ .+......+.+|.            ..  +++|+|++  .. ++++.|+
T Consensus        39 ~g~~la~g~~dg~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~  117 (447)
T 3dw8_B           39 SGELLATGDKGGRVVIFQQEQENKIQSHSR-GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDK  117 (447)
T ss_dssp             SSSEEEEEETTSEEEEEEECC-----CCCC-CCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSS
T ss_pred             CCCEEEEEcCCCeEEEEEecCCCCCCcccc-cceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCC
Confidence            367899999999999999887621100000 0000122344665            44  89999998  67 9999999


Q ss_pred             cEEEEECCCCCCcc---------------------------------------cccceeeeeeeeeeeecCCce-EEeeC
Q 021744           88 HSNNYRAGNSKNSN---------------------------------------INNRAVIKTDILCRNWVQGNC-MYGEK  127 (308)
Q Consensus        88 ~i~vwd~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~-~~g~~  127 (308)
                      +|++||+.+++...                                       .....|...+..+.|+|++.. ++| .
T Consensus       118 ~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~  196 (447)
T 3dw8_B          118 TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-D  196 (447)
T ss_dssp             CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-C
T ss_pred             eEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-C
Confidence            99999996532210                                       112456677999999999977 555 8


Q ss_pred             CCeEEEEEcCCCceeee-------EeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCCeE----EEEEeC-CC--
Q 021744          128 CKFLHSWTVGDGFKLLT-------QLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQC----AGVINL-GG--  192 (308)
Q Consensus       128 d~~i~iwd~~~~~~~~~-------~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~~~----~~~~~~-~~--  192 (308)
                      |+.|++||+.+..+.+.       .+.+|...|.+++|+|++ ++|++++.|++|++||+++++.    +..+.. ..  
T Consensus       197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  276 (447)
T 3dw8_B          197 DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPS  276 (447)
T ss_dssp             SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC----
T ss_pred             CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcc
Confidence            99999999985424444       356899999999999998 9999999999999999999886    667763 32  


Q ss_pred             ----------eeEEE--EcCCCEEEEEcCCcEEEEEcCC-Ccee-eeeCCCCC---------------EEEEEEeCC--E
Q 021744          193 ----------EVGCM--ISEGPWIFIGVTNFVKAWNTQT-NTDL-SLSGPVGQ---------------VYAMAVGND--L  241 (308)
Q Consensus       193 ----------~v~~~--~~~~~~l~~~~d~~i~~wd~~~-~~~~-~~~~~~~~---------------v~~~~~~~~--~  241 (308)
                                .+.++  .+++++|++++++.|++||+++ ++.+ .+..|...               +..++|+|+  +
T Consensus       277 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~  356 (447)
T 3dw8_B          277 NRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV  356 (447)
T ss_dssp             -CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE
T ss_pred             ccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCE
Confidence                      66665  4789999987779999999997 6655 67777531               334999999  8


Q ss_pred             EEEEcCCCeEEEEEcCCCCcccccceecc---------------------------------ccCCCeEE-EEecCCCeE
Q 021744          242 LFAGTQDGAILAWKFNVTTNCFEPAASLK---------------------------------VHTDSNRA-HFSRDVTSL  287 (308)
Q Consensus       242 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~---------------------------------~~~~~v~~-~~s~d~~~l  287 (308)
                      |++|+.||.|++||+.+++.    + .+.                                 .+...+.. +|+|++.+|
T Consensus       357 l~s~s~dg~v~iwd~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~l  431 (447)
T 3dw8_B          357 VMTGSYNNFFRMFDRNTKRD----I-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENII  431 (447)
T ss_dssp             EEEECSTTEEEEEETTTCCE----E-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEE
T ss_pred             EEEeccCCEEEEEEcCCCcc----e-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEE
Confidence            99999999999999988632    1 111                                 23446777 999999999


Q ss_pred             EEeeceEEEEeec
Q 021744          288 LGSVSFIMFIGQN  300 (308)
Q Consensus       288 ~~s~s~~i~~~~~  300 (308)
                      +++++..+|++..
T Consensus       432 a~~~~~~~~~~~~  444 (447)
T 3dw8_B          432 AVATTNNLYIFQD  444 (447)
T ss_dssp             EEECSSCEEEEEC
T ss_pred             EEEecceeeeecc
Confidence            9877666777654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=9.8e-32  Score=237.24  Aligned_cols=242  Identities=14%  Similarity=0.212  Sum_probs=189.6

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      .++++++.|++|++||..++            .....+.+|...  ++.+  ++.. ++|+.|++|++||+.+++... .
T Consensus       170 ~~l~s~~~dg~i~vwd~~~~------------~~~~~~~~h~~~v~~~~~--~~~~l~s~s~dg~i~~wd~~~~~~~~-~  234 (445)
T 2ovr_B          170 NIIISGSTDRTLKVWNAETG------------ECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLH-V  234 (445)
T ss_dssp             TEEEEEETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEE-E
T ss_pred             CEEEEEeCCCeEEEEECCcC------------cEEEEECCCCCcEEEEEe--cCCEEEEEeCCCEEEEEECCCCcEEE-E
Confidence            35555555555555555443            011123356555  4444  4566 888889999999887765442 2


Q ss_pred             cceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCe
Q 021744          104 NRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ  183 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~  183 (308)
                      ...|...+.++.+ .....++++.|+.|++||+.++ +.+..+.+|...|.+++|  ++.++++++.|+.|++||+++++
T Consensus       235 ~~~~~~~v~~~~~-~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~  310 (445)
T 2ovr_B          235 LMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN  310 (445)
T ss_dssp             EECCSSCEEEEEE-CSSCEEEEETTSCEEEEEGGGT-EEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC
T ss_pred             EcCCcccEEEEEE-CCCEEEEEcCCCEEEEEECCCC-cEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC
Confidence            3445556777776 3334589999999999999998 788999999999999999  67899999999999999999999


Q ss_pred             EEEEEe-CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeC---CCCCEEEEEEeCCEEEEEcCCCeEEEEEcC
Q 021744          184 CAGVIN-LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSG---PVGQVYAMAVGNDLLFAGTQDGAILAWKFN  257 (308)
Q Consensus       184 ~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~---~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~  257 (308)
                      .+..+. +...+.++.++++++++++ |+.|++||+++++.. .+..   |...|.+++|+++++++|+.||.|++||+.
T Consensus       311 ~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~  390 (445)
T 2ovr_B          311 CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK  390 (445)
T ss_dssp             EEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred             EEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECC
Confidence            998887 6777888877888888776 999999999998877 5554   888999999988899999999999999999


Q ss_pred             CCCcccccceec-----cccCCCeEE-EEecCCCeEEEee
Q 021744          258 VTTNCFEPAASL-----KVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       258 ~~~~~~~~~~~~-----~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      ++    +.+..+     ..|...+.+ +|+|++.++++++
T Consensus       391 ~~----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~  426 (445)
T 2ovr_B          391 TG----EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS  426 (445)
T ss_dssp             TC----CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEEC
T ss_pred             CC----ceeeeeeccccCCCCceEEEEEecCCEEEEEEcc
Confidence            87    555555     478889999 9999999888665

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.8e-32  Score=232.97  Aligned_cols=263  Identities=10%  Similarity=0.005  Sum_probs=203.9

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      +.++++++.|+.|++|+...+.          ......+.+|...  +++|+|++.+ ++++.|++|++||+++++....
T Consensus        20 ~~~l~~~~~d~~v~i~~~~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~   89 (372)
T 1k8k_C           20 RTQIAICPNNHEVHIYEKSGNK----------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT   89 (372)
T ss_dssp             SSEEEEECSSSEEEEEEEETTE----------EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred             CCEEEEEeCCCEEEEEeCCCCc----------EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee
Confidence            5789999999999999987651          0012233466666  8999999999 9999999999999977653222


Q ss_pred             -ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCce---eeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEE
Q 021744          103 -NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFK---LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW  177 (308)
Q Consensus       103 -~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~w  177 (308)
                       ....|...+..+.|++++.. ++++.|+.|++||+.....   ......+|...|.+++|+|++++|++++.|+.|++|
T Consensus        90 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~  169 (372)
T 1k8k_C           90 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF  169 (372)
T ss_dssp             EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEE
Confidence             22456667999999999976 8899999999999987731   223336789999999999999999999999999999


Q ss_pred             eCC------------------CCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEE
Q 021744          178 DCA------------------SGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYA  234 (308)
Q Consensus       178 d~~------------------~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~  234 (308)
                      |++                  .++.+..+. +...+.++  .+++++|++++ |+.|++||+++++.+ .+..|...+.+
T Consensus       170 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~  249 (372)
T 1k8k_C          170 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA  249 (372)
T ss_dssp             ECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEE
T ss_pred             EcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEE
Confidence            954                  677777775 66777766  47888888776 999999999998877 78889999999


Q ss_pred             EEEeCC--EEEEEcCCCeEEEEEcCC--CCc----------------------------ccccc------eec-cccCCC
Q 021744          235 MAVGND--LLFAGTQDGAILAWKFNV--TTN----------------------------CFEPA------ASL-KVHTDS  275 (308)
Q Consensus       235 ~~~~~~--~l~~g~~dg~i~iwd~~~--~~~----------------------------~~~~~------~~~-~~~~~~  275 (308)
                      ++|+|+  ++++| .|+.|++|++..  +..                            ..+..      ..+ .+|...
T Consensus       250 ~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  328 (372)
T 1k8k_C          250 VTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS  328 (372)
T ss_dssp             EEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSC
T ss_pred             EEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCC
Confidence            999999  55555 999999999987  310                            00010      333 489999


Q ss_pred             eEE-EEe-cCC---CeEEEee-ceEEEEee
Q 021744          276 NRA-HFS-RDV---TSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       276 v~~-~~s-~d~---~~l~~s~-s~~i~~~~  299 (308)
                      |.+ +|. ++|   .+|++++ +..|.+|.
T Consensus       329 v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~  358 (372)
T 1k8k_C          329 VSQISVLSGGKAKCSQFCTTGMDGGMSIWD  358 (372)
T ss_dssp             EEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             cceeEEecCCCcceeeEEEecCCCceEEEE
Confidence            999 766 666   7888665 66666654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.6e-31  Score=233.62  Aligned_cols=249  Identities=15%  Similarity=0.256  Sum_probs=206.8

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      +.++++++.|++|++||..++           . ....+.+|...  +++++  +.. ++|+.|++|++||+.+++... 
T Consensus       129 g~~l~sg~~dg~i~vwd~~~~-----------~-~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~-  193 (445)
T 2ovr_B          129 GNRIVSGSDDNTLKVWSAVTG-----------K-CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIH-  193 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTTC-----------C-EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEE-
T ss_pred             CCEEEEEECCCcEEEEECCCC-----------c-EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEE-
Confidence            678999999999999998876           1 12234567766  66665  567 999999999999998876542 


Q ss_pred             ccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744          103 NNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~  182 (308)
                      ....|...+.++.+. ...+++++.|+.|++||+.++ +.+..+.+|...|.++++  ++.++++++.|+.|++||++++
T Consensus       194 ~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~  269 (445)
T 2ovr_B          194 TLYGHTSTVRCMHLH-EKRVVSGSRDATLRVWDIETG-QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE  269 (445)
T ss_dssp             EECCCSSCEEEEEEE-TTEEEEEETTSEEEEEESSSC-CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT
T ss_pred             EECCCCCcEEEEEec-CCEEEEEeCCCEEEEEECCCC-cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC
Confidence            334566667777774 345699999999999999998 788899999999999999  6789999999999999999999


Q ss_pred             eEEEEEe-CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcCCC
Q 021744          183 QCAGVIN-LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       183 ~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~  259 (308)
                      +++..+. +...+.++..++.++++++ |+.|++||+++++.. .+.+|...+.++.++++++++|+.||.|++||++++
T Consensus       270 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~  349 (445)
T 2ovr_B          270 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG  349 (445)
T ss_dssp             EEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred             cEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCC
Confidence            9999888 7788888877999998876 999999999999887 788999999999998889999999999999999887


Q ss_pred             Ccccccceeccc---cCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          260 TNCFEPAASLKV---HTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       260 ~~~~~~~~~~~~---~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                          +++..+..   |...|.+ +|+  +.+|++++ +..|.++.
T Consensus       350 ----~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd  388 (445)
T 2ovr_B          350 ----QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD  388 (445)
T ss_dssp             ----CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             ----cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence                66666665   8888988 885  56777555 55555554

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.7e-32  Score=228.56  Aligned_cols=234  Identities=15%  Similarity=0.199  Sum_probs=177.5

Q ss_pred             ccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC--cccc-cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEc
Q 021744           64 ATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN--SNIN-NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTV  136 (308)
Q Consensus        64 ~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~  136 (308)
                      +.+|...  +++|+|+  + |+|+.|++|++||+..+..  .... ...|...+..+.|+|++.. ++++.|+.|++||+
T Consensus        10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~   87 (330)
T 2hes_X           10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAK   87 (330)
T ss_dssp             EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Confidence            4577777  7888887  7 9999999999999976532  1111 2237778999999999976 89999999999998


Q ss_pred             CCC------ceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC----CeEEEEEe-CCCeeEEE--EcCCCE
Q 021744          137 GDG------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS----GQCAGVIN-LGGEVGCM--ISEGPW  203 (308)
Q Consensus       137 ~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~----~~~~~~~~-~~~~v~~~--~~~~~~  203 (308)
                      ...      .+.+..+.+|...|.+++|+|++++|++++.|++|++||++.    .+++..+. |...+.++  .|++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~  167 (330)
T 2hes_X           88 EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEAL  167 (330)
T ss_dssp             -------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSE
T ss_pred             ccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCE
Confidence            532      145678899999999999999999999999999999999953    24566666 77778776  478899


Q ss_pred             EEEEc-CCcEEEEEcCCC--cee-eeeCCCCCEEEEEEeCC----EEEEEcCCCeEEEEEcCCCCc----ccccceeccc
Q 021744          204 IFIGV-TNFVKAWNTQTN--TDL-SLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVTTN----CFEPAASLKV  271 (308)
Q Consensus       204 l~~~~-d~~i~~wd~~~~--~~~-~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~~~~~----~~~~~~~~~~  271 (308)
                      |++++ |++|++||..++  +++ .+.+|...|.+++|+|+    +|++|+.|+.|++||+..+..    .+.....+..
T Consensus       168 l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~  247 (330)
T 2hes_X          168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD  247 (330)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS
T ss_pred             EEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc
Confidence            99877 999999999876  344 78899999999999996    799999999999999975421    0123344444


Q ss_pred             -cCCCeEE-EEecCCCeEEEeeceEEEEee
Q 021744          272 -HTDSNRA-HFSRDVTSLLGSVSFIMFIGQ  299 (308)
Q Consensus       272 -~~~~v~~-~~s~d~~~l~~s~s~~i~~~~  299 (308)
                       |...|.+ +|++++.++.++.+..|.++.
T Consensus       248 ~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~  277 (330)
T 2hes_X          248 VHKRQVYNVAWGFNGLIASVGADGVLAVYE  277 (330)
T ss_dssp             CCSSCEEEEEECTTSCEEEEETTSCEEEEE
T ss_pred             ccccceEEEEEcCCCEEEEEeCCCEEEEEE
Confidence             8899999 999876433344454444443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.8e-33  Score=238.74  Aligned_cols=221  Identities=10%  Similarity=0.039  Sum_probs=170.9

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCC-C-c
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSK-N-S  100 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~-~-~  100 (308)
                      +.+||+++.|++|++|+...+.          ......+.+|...  +++|+|++++ ++++.|++|++||+.+++ . .
T Consensus        23 g~~l~~~~~d~~i~iw~~~~~~----------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~   92 (377)
T 3dwl_C           23 RTEFVTTTATNQVELYEQDGNG----------WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ   92 (377)
T ss_dssp             SSEEECCCSSSCBCEEEEETTE----------EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCC
T ss_pred             CCEEEEecCCCEEEEEEccCCc----------eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence            6789999999999999987640          0223345677777  8999999999 999999999999998776 1 1


Q ss_pred             ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCce--eeeEeeC-cccceEEEEEeCCCCEEEEeeCCCcEEE
Q 021744          101 NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFK--LLTQLEG-HQKVVSGITLPSGSDKLYSGSKDETVRV  176 (308)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~--~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~v~~  176 (308)
                      ......|...+.++.|+|++.. ++++.|+.|++||++++..  ....+.+ |...|.+++|+|++++|++++.|++|++
T Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~i  172 (377)
T 3dwl_C           93 TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYV  172 (377)
T ss_dssp             EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEE
T ss_pred             eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEE
Confidence            1234557777999999999866 8999999999999998722  4677887 9999999999999999999999999999


Q ss_pred             EeCCC------------------CeEEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCce----e-eeeCCCC
Q 021744          177 WDCAS------------------GQCAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTD----L-SLSGPVG  230 (308)
Q Consensus       177 wd~~~------------------~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~----~-~~~~~~~  230 (308)
                      ||++.                  ++++..+.+...+.++  .+++++|++++ |+.|++||+++++.    + .+..|..
T Consensus       173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  252 (377)
T 3dwl_C          173 LSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQL  252 (377)
T ss_dssp             EEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSS
T ss_pred             EEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCC
Confidence            99852                  4455555566777766  47888888776 99999999999876    4 7889999


Q ss_pred             CEEEEEEeCC--EEEEEcCCCeEEEEEcC
Q 021744          231 QVYAMAVGND--LLFAGTQDGAILAWKFN  257 (308)
Q Consensus       231 ~v~~~~~~~~--~l~~g~~dg~i~iwd~~  257 (308)
                      .|.+++|+|+  +|++++.++.+ +|+..
T Consensus       253 ~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          253 PLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             CEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             ceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            9999999999  77777766655 66665

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.8e-31  Score=224.48  Aligned_cols=254  Identities=17%  Similarity=0.196  Sum_probs=197.1

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCC-CCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLP-PAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~-~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      ++||+| .|++|++||+.+++           ... ....+|...  +++|+|++++ ++|+.|++|++||+++++.+..
T Consensus        37 ~~lAvg-~D~tV~iWd~~tg~-----------~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~  104 (318)
T 4ggc_A           37 NVLAVA-LDNSVYLWSASSGD-----------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  104 (318)
T ss_dssp             SEEEEE-ETTEEEEEETTTCC-----------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             CEEEEE-eCCEEEEEECCCCC-----------EEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence            466665 59999999998871           111 123356555  8999999999 9999999999999988865532


Q ss_pred             ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744          103 NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~  181 (308)
                       ...|...+.  .+.+.+.. ++++.++.+++|+.......+..+.+|...+..+.++++++++++++.|++|++||+++
T Consensus       105 -~~~h~~~~~--~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  181 (318)
T 4ggc_A          105 -MTSHSARVG--SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  181 (318)
T ss_dssp             -EECCSSCEE--EEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             -ecCccceEE--EeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence             233444343  34444544 88999999999999887677888999999999999999999999999999999999998


Q ss_pred             CeEE----EEEe-CCCeeEEE--EcC-CCEEE--EEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEE--EEc
Q 021744          182 GQCA----GVIN-LGGEVGCM--ISE-GPWIF--IGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLF--AGT  246 (308)
Q Consensus       182 ~~~~----~~~~-~~~~v~~~--~~~-~~~l~--~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~--~g~  246 (308)
                      ++..    .... +...+.++  .+. ...+.  +++ ++.|++||.+.........+...+..+.|+|+  .++  +|+
T Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~  261 (318)
T 4ggc_A          182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF  261 (318)
T ss_dssp             BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECT
T ss_pred             CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEc
Confidence            6532    2222 55566655  344 34443  334 78999999999988877778889999999998  444  455


Q ss_pred             CCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          247 QDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       247 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      .|+.|++||++++    +++.++.+|...|++ +|+||+++|++++ +..|.+|.
T Consensus       262 ~d~~i~iwd~~~~----~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd  312 (318)
T 4ggc_A          262 AQNQLVIWKYPTM----AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR  312 (318)
T ss_dssp             TTCCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             CCCEEEEEECCCC----cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            8999999999987    788999999999999 9999999999665 66666664

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.9e-31  Score=229.56  Aligned_cols=266  Identities=11%  Similarity=0.051  Sum_probs=190.0

Q ss_pred             CCCceEEecCC-------CeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe------------eeccC
Q 021744           25 GGGLSTADTRQ-------KVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG------------RNNNF   85 (308)
Q Consensus        25 ~~~~~~s~s~d-------~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~------------~s~~~   85 (308)
                      .+.+||+|+.|       +.|++|+...........++..  ....+.+|+...++++++++.            ++++.
T Consensus        25 dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~--~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~  102 (365)
T 4h5i_A           25 NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHIL--SEFALEDNDDSPTAIDASKGIILVGCNENSTKITQGKG  102 (365)
T ss_dssp             TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEE--EEEECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSC
T ss_pred             CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeee--eEEEccCCCCceEEEEeCCCEEEEEECCCccEEEEecC
Confidence            35678887654       3699999876522111000000  001233455443444555443            45678


Q ss_pred             CCcEEEEECCCCCCcccc--------cceeeeeeeeeeeecCCce---EEeeCCCeEEEEEcCCCceeeeEeeCcccceE
Q 021744           86 NNHSNNYRAGNSKNSNIN--------NRAVIKTDILCRNWVQGNC---MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVS  154 (308)
Q Consensus        86 d~~i~vwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~---~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~  154 (308)
                      |+++|+|++++.+.....        ...+...+..++|+|+|..   ++++.|++|+|||++++ +.+..+. |...|.
T Consensus       103 d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~-~~~~~~~-~~~~V~  180 (365)
T 4h5i_A          103 NKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL-TEKFEIE-TRGEVK  180 (365)
T ss_dssp             CCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT-EEEEEEE-CSSCCC
T ss_pred             CCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC-cEEEEeC-CCCceE
Confidence            899999998655322111        1112233778999999976   35568999999999998 7777776 778999


Q ss_pred             EEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe---CCCeeEEE--EcCCCEEEEEc-CC----cEEEEEcCCCcee-
Q 021744          155 GITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN---LGGEVGCM--ISEGPWIFIGV-TN----FVKAWNTQTNTDL-  223 (308)
Q Consensus       155 ~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~---~~~~v~~~--~~~~~~l~~~~-d~----~i~~wd~~~~~~~-  223 (308)
                      +++|+|+++++++++.+ .+.+|+..+++.+....   +...+.++  .++++++++++ ++    .+++||+...... 
T Consensus       181 ~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~  259 (365)
T 4h5i_A          181 DLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSV  259 (365)
T ss_dssp             EEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEE
T ss_pred             EEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecc
Confidence            99999999999999865 56677777776655443   55566655  68899888765 55    6888998876532 


Q ss_pred             ----eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCccccccee-ccccCCCeEE-EEecCCCeEEEee-ceE
Q 021744          224 ----SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAAS-LKVHTDSNRA-HFSRDVTSLLGSV-SFI  294 (308)
Q Consensus       224 ----~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~-~~s~d~~~l~~s~-s~~  294 (308)
                          .+.+|...|++++|+|+  +||+|+.|+.|+|||++++    +++.+ +.+|...|++ +|+|||++|++++ +.+
T Consensus       260 ~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~----~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~t  335 (365)
T 4h5i_A          260 LRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL----SMSKIFKQAHSFAITEVTISPDSTYVASVSAANT  335 (365)
T ss_dssp             EEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT----EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSE
T ss_pred             eeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC----cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCe
Confidence                56789999999999999  9999999999999999987    77776 4789999999 9999999999655 655


Q ss_pred             EEEee
Q 021744          295 MFIGQ  299 (308)
Q Consensus       295 i~~~~  299 (308)
                      |.++.
T Consensus       336 vrvw~  340 (365)
T 4h5i_A          336 IHIIK  340 (365)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.1e-31  Score=253.39  Aligned_cols=257  Identities=13%  Similarity=0.166  Sum_probs=214.8

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .+.++|+++.|++|++||..++           . ....+.+|...  +++|+|+++. ++++.|++|++||+.+++...
T Consensus        24 ~~~~la~~~~~g~v~iwd~~~~-----------~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~   91 (814)
T 3mkq_A           24 TEPWVLTTLYSGRVEIWNYETQ-----------V-EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV   91 (814)
T ss_dssp             SSSEEEEEETTSEEEEEETTTT-----------E-EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCEEEEEeCCCEEEEEECCCC-----------c-eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            3678999999999999998876           1 12233456666  8999999999 999999999999998876543


Q ss_pred             cccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC-CCCEEEEeeCCCcEEEEeC
Q 021744          102 INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDC  179 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~v~~wd~  179 (308)
                       ....|...+..+.|+|++.. ++++.|+.|++||+.++......+.+|...|.+++|+| ++..+++++.||+|++||+
T Consensus        92 -~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~  170 (814)
T 3mkq_A           92 -DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL  170 (814)
T ss_dssp             -EEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEET
T ss_pred             -EEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence             33457777999999999976 88999999999999987567788899999999999999 7889999999999999999


Q ss_pred             CCCeEEEEEe--CCCeeEEE--Ec--CCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCC
Q 021744          180 ASGQCAGVIN--LGGEVGCM--IS--EGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDG  249 (308)
Q Consensus       180 ~~~~~~~~~~--~~~~v~~~--~~--~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg  249 (308)
                      .+++....+.  +...+.++  .+  ++.++++++ |+.|++||+++++.. .+.+|...|.+++|+|+  ++++++.||
T Consensus       171 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  250 (814)
T 3mkq_A          171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG  250 (814)
T ss_dssp             TCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             CCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            9888777776  32555554  45  788999877 999999999999877 78889999999999999  999999999


Q ss_pred             eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCC--eEEEeeceEEEEe
Q 021744          250 AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVT--SLLGSVSFIMFIG  298 (308)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~--~l~~s~s~~i~~~  298 (308)
                      .|++||+.++    +.+..+..|...+.+ +|+|++.  +++++.+..+.++
T Consensus       251 ~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  298 (814)
T 3mkq_A          251 TLKIWNSSTY----KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL  298 (814)
T ss_dssp             CEEEEETTTC----SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEE
T ss_pred             eEEEEECCCC----cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEE
Confidence            9999999987    778888889999999 9999987  3555554444333

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.3e-32  Score=235.12  Aligned_cols=266  Identities=10%  Similarity=0.093  Sum_probs=206.7

Q ss_pred             CC-ceEEecCCCeEEEeec----CCCCC-----CCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEE
Q 021744           26 GG-LSTADTRQKVCNYWRA----GKCNR-----FPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNY   92 (308)
Q Consensus        26 ~~-~~~s~s~d~~i~~W~~----~~~~~-----~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vw   92 (308)
                      +. +||+++.|+.|++|+.    .++..     ....+.+ .........+|...  +++|+|++.+ ++++.|++|++|
T Consensus        57 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~  135 (425)
T 1r5m_A           57 DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH-PFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLW  135 (425)
T ss_dssp             CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC-CCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CCcEEEEecCCceEEEEEEecccCCccccccccccccccc-cccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            44 8999999999999999    66521     0000111 11111112235545  8999999999 999999999999


Q ss_pred             ECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccc---------------eEEE
Q 021744           93 RAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKV---------------VSGI  156 (308)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~---------------v~~~  156 (308)
                      |. +++.. .....|...+..+.|+|++.. ++++.|+.|++||+.++ +.+..+..+...               +.++
T Consensus       136 ~~-~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (425)
T 1r5m_A          136 NK-TGALL-NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG-TVMQHFELKETGGSSINAENHSGDGSLGVDV  212 (425)
T ss_dssp             ET-TSCEE-EEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT-EEEEEECCC---------------CCCBSCC
T ss_pred             eC-CCCee-eeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC-cEEEEeeccccCccceeeccccCCcceeeEE
Confidence            94 33332 234557777999999999976 88999999999999998 788888887776               9999


Q ss_pred             EEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCC
Q 021744          157 TLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQ  231 (308)
Q Consensus       157 ~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~  231 (308)
                      +|+|+ ..+++++.|+.|++||+++++.+..+. +...+.++  .+++++|++++ |+.|++||+++++.. .+..|...
T Consensus       213 ~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  291 (425)
T 1r5m_A          213 EWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQS  291 (425)
T ss_dssp             EEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSC
T ss_pred             EEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCcc
Confidence            99987 468899999999999999998888886 66777765  57888888776 999999999998776 67789999


Q ss_pred             EEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-c--eEEEEeec
Q 021744          232 VYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-S--FIMFIGQN  300 (308)
Q Consensus       232 v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s--~~i~~~~~  300 (308)
                      |.+++|+|+ ++++++.|+.|++||++++    +.+..+..|...+.+ +|+|++++|++++ +  +.+|-..+
T Consensus       292 i~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~  361 (425)
T 1r5m_A          292 IVSASWVGDDKVISCSMDGSVRLWSLKQN----TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK  361 (425)
T ss_dssp             EEEEEEETTTEEEEEETTSEEEEEETTTT----EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred             EEEEEECCCCEEEEEeCCCcEEEEECCCC----cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence            999999999 9999999999999999987    778888889999999 9999999998666 4  44444433

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.2e-31  Score=234.25  Aligned_cols=242  Identities=14%  Similarity=0.188  Sum_probs=193.4

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEe--cCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFA--NNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s--~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .++++++.|++|++||..++           . ....+.+|...  +++|+  +++.+ ++++.|++|++||+.+++...
T Consensus       174 ~~l~s~s~dg~i~vwd~~~~-----------~-~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~  241 (464)
T 3v7d_B          174 GILVSGSTDRTVRVWDIKKG-----------C-CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP  241 (464)
T ss_dssp             TEEEEEETTSCEEEEETTTT-----------E-EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred             CEEEEEeCCCCEEEEECCCC-----------c-EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence            38999999999999998876           1 12234466666  78888  46677 999999999999997665331


Q ss_pred             c----------------------ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEE
Q 021744          102 I----------------------NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITL  158 (308)
Q Consensus       102 ~----------------------~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~  158 (308)
                      .                      ....|...+..  +.+++.. ++++.|+.|++||+.++ +.+..+.+|...|.+++|
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~  318 (464)
T 3v7d_B          242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTIY  318 (464)
T ss_dssp             -----CCSSEEESCGGGCTTEEEEECCCSSCEEE--EEEETTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEE
T ss_pred             cccccCCcceEeeccCCCeEEEEEccCccceEEE--EcCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCEEEEEE
Confidence            1                      11222233333  3566655 89999999999999998 889999999999999999


Q ss_pred             eCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEE
Q 021744          159 PSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMA  236 (308)
Q Consensus       159 ~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~  236 (308)
                      +|+++++++++.|++|++||+++++++..+. +...+.++..+++++++++ |+.|++||+++.+......+...+..++
T Consensus       319 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  398 (464)
T 3v7d_B          319 DHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITT  398 (464)
T ss_dssp             ETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEE
T ss_pred             cCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEE
Confidence            9999999999999999999999999999997 7788888877788888766 9999999999987764445667778888


Q ss_pred             EeCC--EEEEEcCCCeEEEEEcCCCCccccccee-ccccCCCeEE-EEecCCCeEEEe
Q 021744          237 VGND--LLFAGTQDGAILAWKFNVTTNCFEPAAS-LKVHTDSNRA-HFSRDVTSLLGS  290 (308)
Q Consensus       237 ~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~-~~s~d~~~l~~s  290 (308)
                      |+|+  ++++|+ ||.|++||++++    +++.. +..|...|.. +|+  ++.++++
T Consensus       399 ~~~~~~~l~~~~-dg~i~iwd~~~g----~~~~~~~~~~~~~v~~v~~~--~~~l~~~  449 (464)
T 3v7d_B          399 FYVSDNILVSGS-ENQFNIYNLRSG----KLVHANILKDADQIWSVNFK--GKTLVAA  449 (464)
T ss_dssp             EEECSSEEEEEE-TTEEEEEETTTC----CEEESCTTTTCSEEEEEEEE--TTEEEEE
T ss_pred             EEeCCCEEEEec-CCeEEEEECCCC----cEEehhhccCCCcEEEEEec--CCEEEEE
Confidence            8888  788877 899999999997    55654 6678888998 997  4455533

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.2e-33  Score=238.29  Aligned_cols=228  Identities=11%  Similarity=0.015  Sum_probs=179.3

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCC-CcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCc--eeeeE
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSK-NSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGF--KLLTQ  145 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~--~~~~~  145 (308)
                      +++|+|++++ ++++.|++|++||+.++. ........|...+..+.|+|++.. ++++.|+.|++||+.++.  .....
T Consensus        16 ~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~   95 (377)
T 3dwl_C           16 EHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLV   95 (377)
T ss_dssp             CCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEE
T ss_pred             EEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeE
Confidence            7999999999 999999999999998763 233345678888999999999865 899999999999999872  25667


Q ss_pred             eeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeE---EEEEe--CCCeeEEE--EcCCCEEEEEc-CCcEEEEEc
Q 021744          146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC---AGVIN--LGGEVGCM--ISEGPWIFIGV-TNFVKAWNT  217 (308)
Q Consensus       146 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~---~~~~~--~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~  217 (308)
                      +.+|...|.+++|+|++++|++++.|+.|++||+++++.   ...+.  +...+.++  .+++++|++++ |+.|++||+
T Consensus        96 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  175 (377)
T 3dwl_C           96 LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSA  175 (377)
T ss_dssp             CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEE
T ss_pred             ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEE
Confidence            788999999999999999999999999999999998873   56665  67778776  47888999776 999999999


Q ss_pred             CC------------------Ccee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCe
Q 021744          218 QT------------------NTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSN  276 (308)
Q Consensus       218 ~~------------------~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v  276 (308)
                      ++                  +++. .+ .|...|.+++|+|+  +|++++.||.|++||+.++......+..+..|...+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v  254 (377)
T 3dwl_C          176 YVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPL  254 (377)
T ss_dssp             CCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCE
T ss_pred             EecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCce
Confidence            63                  3333 44 89999999999999  899999999999999998732111277888999999


Q ss_pred             EE-EEecCCCeEEEeeceEEEEee
Q 021744          277 RA-HFSRDVTSLLGSVSFIMFIGQ  299 (308)
Q Consensus       277 ~~-~~s~d~~~l~~s~s~~i~~~~  299 (308)
                      .+ +|+|++++|+++.+..+.++.
T Consensus       255 ~~~~~s~~~~~l~~~~~~~~~~~~  278 (377)
T 3dwl_C          255 RSLLWANESAIVAAGYNYSPILLQ  278 (377)
T ss_dssp             EEEEEEETTEEEEEESSSSEEEEC
T ss_pred             EEEEEcCCCCEEEEEcCCcEEEEE
Confidence            99 999999999877643333443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=8.4e-33  Score=233.42  Aligned_cols=223  Identities=11%  Similarity=0.054  Sum_probs=175.8

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEec--CCCe-eeccCCCcEEEEECCCCCCc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFAN--NTWG-RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~--~g~~-~s~~~d~~i~vwd~~~~~~~  100 (308)
                      +.+|||++.|++|++||...+.          ......+.+|...  +++|+|  ++.+ ++|+.|++|++||+.+++..
T Consensus        25 g~~lasgs~D~~v~lwd~~~~~----------~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~   94 (316)
T 3bg1_A           25 GTRLATCSSDRSVKIFDVRNGG----------QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE   94 (316)
T ss_dssp             GCEEEEEETTTEEEEEEEETTE----------EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCC
T ss_pred             CCEEEEEeCCCeEEEEEecCCC----------cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcce
Confidence            5789999999999999987651          0112235688877  899975  4777 99999999999999876422


Q ss_pred             -ccccceeeeeeeeeeeecC--Cc-eEEeeCCCeEEEEEcCCCc--eeeeEeeCcccceEEEEEeCC-------------
Q 021744          101 -NINNRAVIKTDILCRNWVQ--GN-CMYGEKCKFLHSWTVGDGF--KLLTQLEGHQKVVSGITLPSG-------------  161 (308)
Q Consensus       101 -~~~~~~~~~~~~~~~~~~~--~~-~~~g~~d~~i~iwd~~~~~--~~~~~~~~h~~~v~~~~~~~~-------------  161 (308)
                       ......|...+..+.|+|+  +. +++|+.|+.|++||+.+..  .....+.+|...|.+++|+|+             
T Consensus        95 ~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  174 (316)
T 3bg1_A           95 KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQ  174 (316)
T ss_dssp             EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSC
T ss_pred             EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccccccccc
Confidence             1233457777999999997  54 4899999999999998752  224566789999999999997             


Q ss_pred             ----CCEEEEeeCCCcEEEEeCCCC---eEEEEEe-CCCeeEEEE--cCC----CEEEEEc-CCcEEEEEcCCC---c--
Q 021744          162 ----SDKLYSGSKDETVRVWDCASG---QCAGVIN-LGGEVGCMI--SEG----PWIFIGV-TNFVKAWNTQTN---T--  221 (308)
Q Consensus       162 ----~~~l~s~s~dg~v~~wd~~~~---~~~~~~~-~~~~v~~~~--~~~----~~l~~~~-d~~i~~wd~~~~---~--  221 (308)
                          +.+|++++.|++|++||++..   +++..+. |...+.++.  |++    ++|++++ |++|++||+++.   +  
T Consensus       175 ~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~  254 (316)
T 3bg1_A          175 KPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS  254 (316)
T ss_dssp             CCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCB
T ss_pred             CccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchh
Confidence                468999999999999999865   3455555 777788773  554    7788776 999999999863   1  


Q ss_pred             eeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCC
Q 021744          222 DLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       222 ~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~  258 (308)
                      ...+..|...|++++|+|+  +|++++.|+.|++|+...
T Consensus       255 ~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          255 PKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             CCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             hhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            2245678899999999999  899999999999999864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.3e-31  Score=261.98  Aligned_cols=257  Identities=17%  Similarity=0.175  Sum_probs=217.9

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .+.++|+++.|++|++||..++           . ....+.+|...  +++|+|++++ ++++.|++|++||+.+++...
T Consensus       626 ~~~~l~s~~~d~~i~vw~~~~~-----------~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~  693 (1249)
T 3sfz_A          626 DGQRIASCGADKTLQVFKAETG-----------E-KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVH  693 (1249)
T ss_dssp             TSSEEEEEETTSCEEEEETTTC-----------C-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCC-----------C-EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEE
Confidence            4678999999999999999887           1 12234467777  8999999999 999999999999998886543


Q ss_pred             cccceeeeeeeeeeeecCC--ce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 021744          102 INNRAVIKTDILCRNWVQG--NC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~--~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd  178 (308)
                       ....|...+.++.|++++  .. ++|+.|+.|++||+.++ +.+..+.+|...|.+++|+|+++++++++.||+|++||
T Consensus       694 -~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd  771 (1249)
T 3sfz_A          694 -TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD  771 (1249)
T ss_dssp             -EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS-SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEE
T ss_pred             -EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc-chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEe
Confidence             334677779999999964  33 88999999999999999 78889999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEeCCC--------------eeEE--EEcCCCEEEEEcCCcEEEEEcCCCcee-e-eeCCCCCEEEEEEeCC
Q 021744          179 CASGQCAGVINLGG--------------EVGC--MISEGPWIFIGVTNFVKAWNTQTNTDL-S-LSGPVGQVYAMAVGND  240 (308)
Q Consensus       179 ~~~~~~~~~~~~~~--------------~v~~--~~~~~~~l~~~~d~~i~~wd~~~~~~~-~-~~~~~~~v~~~~~~~~  240 (308)
                      +++++....+....              .+.+  +.++++.++++.++.+.+||+.++... . ..+|...+.+++|+|+
T Consensus       772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~  851 (1249)
T 3sfz_A          772 VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY  851 (1249)
T ss_dssp             GGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSS
T ss_pred             CCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCC
Confidence            99998887775221              2333  357899999988999999999998877 3 3488999999999999


Q ss_pred             --EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          241 --LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       241 --~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                        ++++++.||.|++||+.++    ..+..+.+|...|.+ +|+|++.++++++ +..+.++.
T Consensus       852 ~~~l~~~~~dg~v~vwd~~~~----~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~  910 (1249)
T 3sfz_A          852 DHLAVIALSQYCVELWNIDSR----LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE  910 (1249)
T ss_dssp             TTEEEEECSSSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCEEEEEeCCCeEEEEEcCCC----ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence              9999999999999999987    778889999999999 9999999988665 55555544

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.8e-31  Score=244.75  Aligned_cols=231  Identities=19%  Similarity=0.210  Sum_probs=190.1

Q ss_pred             Cccccccc--eeEEecCC-Ce-eeccCCCcEEEEECCCCCCc----ccccceeeeeeeeeeeecCCce-EEeeCCCeEEE
Q 021744           63 AATANGAA--AKRFANNT-WG-RNNNFNNHSNNYRAGNSKNS----NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHS  133 (308)
Q Consensus        63 ~~~gh~~~--~i~~s~~g-~~-~s~~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~i  133 (308)
                      .+.+|...  +++++|++ .+ +||+.|++|++||+.+....    .....+|...+.++.|++++.. ++|+.|+.|++
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v  456 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL  456 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence            35689888  89999876 45 99999999999999764322    1234567778999999999976 89999999999


Q ss_pred             EEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe----CCCeeEEE--EcCC--CEEE
Q 021744          134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN----LGGEVGCM--ISEG--PWIF  205 (308)
Q Consensus       134 wd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~----~~~~v~~~--~~~~--~~l~  205 (308)
                      ||+.++ +.+..+.+|...|.+++|+|++++|++++.|++|++||+..........    |...+.++  .+++  ..++
T Consensus       457 wd~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  535 (694)
T 3dm0_A          457 WDLAAG-VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV  535 (694)
T ss_dssp             EETTTT-EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred             EECCCC-cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence            999998 7888999999999999999999999999999999999987554433322    45567776  3443  4677


Q ss_pred             EEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EE
Q 021744          206 IGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HF  280 (308)
Q Consensus       206 ~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~  280 (308)
                      +++ |++|++||+++.+.. .+.+|...|++++|+|+  +|++|+.||.|++||+.++    +.+..+.. ...+.+ +|
T Consensus       536 s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~----~~~~~~~~-~~~v~~~~~  610 (694)
T 3dm0_A          536 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG----KKLYSLEA-NSVIHALCF  610 (694)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT----EEEECCBC-SSCEEEEEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----ceEEEecC-CCcEEEEEE
Confidence            766 999999999998877 78899999999999999  9999999999999999987    55666654 456778 99


Q ss_pred             ecCCCeEEEeeceEEEEee
Q 021744          281 SRDVTSLLGSVSFIMFIGQ  299 (308)
Q Consensus       281 s~d~~~l~~s~s~~i~~~~  299 (308)
                      +|++.+|+++.+..|.++.
T Consensus       611 sp~~~~l~~~~~~~i~iwd  629 (694)
T 3dm0_A          611 SPNRYWLCAATEHGIKIWD  629 (694)
T ss_dssp             CSSSSEEEEEETTEEEEEE
T ss_pred             cCCCcEEEEEcCCCEEEEE
Confidence            9999998887755555554

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.6e-31  Score=224.05  Aligned_cols=223  Identities=15%  Similarity=0.239  Sum_probs=182.5

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .+.+|++++.|+.|++|+.....           . ......+...  .+.+++++.. ++++.|+.+++||+.......
T Consensus        97 dg~~l~s~~~d~~i~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~  164 (340)
T 4aow_A           97 DGQFALSGSWDGTLRLWDLTTGT-----------T-TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT  164 (340)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTE-----------E-EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE
T ss_pred             CCCEEEEEcccccceEEeecccc-----------e-eeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEE
Confidence            36789999999999999987651           1 1111122222  6788899999 999999999999997665554


Q ss_pred             cccceeeeeeeeeeeecCCc---eEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 021744          102 INNRAVIKTDILCRNWVQGN---CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~---~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd  178 (308)
                      .....|...+..+.+.+++.   .++++.|+.|++||+.+. +.+..+.+|.+.|.+++|+|++++|++++.|++|++||
T Consensus       165 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd  243 (340)
T 4aow_A          165 VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD  243 (340)
T ss_dssp             ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC-ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            45566777788888887662   378999999999999998 88899999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEeCCCeeEEE--EcCCCEEEEEcCCcEEEEEcCCCcee-e---------eeCCCCCEEEEEEeCC--EEEE
Q 021744          179 CASGQCAGVINLGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDL-S---------LSGPVGQVYAMAVGND--LLFA  244 (308)
Q Consensus       179 ~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~~~~-~---------~~~~~~~v~~~~~~~~--~l~~  244 (308)
                      +++.+++..+.....+.++  .+++.+++++.|+.|++||++++... .         ...|...|++++|+|+  +|++
T Consensus       244 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s  323 (340)
T 4aow_A          244 LNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA  323 (340)
T ss_dssp             TTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEE
T ss_pred             eccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEE
Confidence            9999999999977777766  35666666777999999999987654 2         3468889999999999  9999


Q ss_pred             EcCCCeEEEEEcCCCC
Q 021744          245 GTQDGAILAWKFNVTT  260 (308)
Q Consensus       245 g~~dg~i~iwd~~~~~  260 (308)
                      |+.||.|+|||+++++
T Consensus       324 gs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          324 GYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EETTSCEEEEEEEC--
T ss_pred             EeCCCEEEEEeCCCcC
Confidence            9999999999999873

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=4.3e-31  Score=226.26  Aligned_cols=246  Identities=10%  Similarity=0.057  Sum_probs=195.2

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      +.+|++++.|+.|++|+.....          ......+.+|...  +++|+|++.+ ++++.|++|++||+.+++..  
T Consensus        54 g~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--  121 (368)
T 3mmy_A           54 GNFLIAGSWANDVRCWEVQDSG----------QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI--  121 (368)
T ss_dssp             SEEEEEEETTSEEEEEEECTTS----------CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--
T ss_pred             ceEEEEECCCCcEEEEEcCCCC----------ceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCce--
Confidence            5789999999999999988630          2222345567766  8999999999 99999999999999887655  


Q ss_pred             ccceeeeeeeeeee--ecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744          103 NNRAVIKTDILCRN--WVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC  179 (308)
Q Consensus       103 ~~~~~~~~~~~~~~--~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~  179 (308)
                      ....|...+..+.|  .+++.. ++++.|+.|++||++++ +.+..+..|. .+.++.+.+  ..+++++.++.+++|++
T Consensus       122 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~i~~~~~  197 (368)
T 3mmy_A          122 QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS-NPMMVLQLPE-RCYCADVIY--PMAVVATAERGLIVYQL  197 (368)
T ss_dssp             EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS-SCSEEEECSS-CEEEEEEET--TEEEEEEGGGCEEEEEC
T ss_pred             eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC-cEEEEEecCC-CceEEEecC--CeeEEEeCCCcEEEEEe
Confidence            35567777999999  778765 89999999999999998 7788888664 666666664  48899999999999999


Q ss_pred             CCCeEEEEEe---CCCeeE--EEEcCCCE----EEEEc-CCcEEEEEcCCCce---e-eeeCCCC------------CEE
Q 021744          180 ASGQCAGVIN---LGGEVG--CMISEGPW----IFIGV-TNFVKAWNTQTNTD---L-SLSGPVG------------QVY  233 (308)
Q Consensus       180 ~~~~~~~~~~---~~~~v~--~~~~~~~~----l~~~~-d~~i~~wd~~~~~~---~-~~~~~~~------------~v~  233 (308)
                      +.........   ......  ++.++...    +++++ |+.|++||++....   . .+..|..            .|+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  277 (368)
T 3mmy_A          198 ENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVN  277 (368)
T ss_dssp             SSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEE
T ss_pred             ccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceE
Confidence            9765443332   222333  33443332    66555 99999999998732   2 5666665            799


Q ss_pred             EEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          234 AMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       234 ~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      +++|+|+  +|++++.||.|++||+.++    +++..+..|...+.+ +|+|++++|++++
T Consensus       278 ~~~~sp~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~g~~l~~~s  334 (368)
T 3mmy_A          278 GIAFHPVHGTLATVGSDGRFSFWDKDAR----TKLKTSEQLDQPISACCFNHNGNIFAYAS  334 (368)
T ss_dssp             EEEECTTTCCEEEEETTSCEEEEETTTT----EEEEECCCCSSCEEEEEECTTSSCEEEEE
T ss_pred             EEEEecCCCEEEEEccCCeEEEEECCCC----cEEEEecCCCCCceEEEECCCCCeEEEEe
Confidence            9999999  9999999999999999987    778889999999999 9999999999665

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.1e-31  Score=225.41  Aligned_cols=244  Identities=9%  Similarity=-0.018  Sum_probs=196.7

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCC-e-eeccCCCcEEEEEC-CCCCCc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTW-G-RNNNFNNHSNNYRA-GNSKNS  100 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~-~-~s~~~d~~i~vwd~-~~~~~~  100 (308)
                      +.+|++++.|+.|++|+........         ......+|...  +++|+|++. + ++++.|++|++||+ .+++..
T Consensus        23 ~~~l~~~~~d~~v~iw~~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~   93 (342)
T 1yfq_A           23 KSLLLITSWDGSLTVYKFDIQAKNV---------DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ   93 (342)
T ss_dssp             GTEEEEEETTSEEEEEEEETTTTEE---------EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE
T ss_pred             CCEEEEEcCCCeEEEEEeCCCCccc---------cceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceE
Confidence            5689999999999999988761100         01122356555  899999999 8 99999999999999 877553


Q ss_pred             ccccce--eeeeeeeeeeecCCce-EEeeCCCeEEEEEcCC---------CceeeeEeeCcccceEEEEEeCCCCEEEEe
Q 021744          101 NINNRA--VIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGD---------GFKLLTQLEGHQKVVSGITLPSGSDKLYSG  168 (308)
Q Consensus       101 ~~~~~~--~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~---------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  168 (308)
                        ....  |...+..+.|++ +.. ++++.|+.|++||+++         . +.+..+. |...|.+++|+|++  ++++
T Consensus        94 --~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~-~~~~v~~~~~~~~~--l~~~  166 (342)
T 1yfq_A           94 --ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKN-LNSNNTK-VKNKIFTMDTNSSR--LIVG  166 (342)
T ss_dssp             --ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEE-SCSSSSS-SCCCEEEEEECSSE--EEEE
T ss_pred             --eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccC-CeeeEEe-eCCceEEEEecCCc--EEEE
Confidence              4455  777899999999 644 8999999999999987         5 5566666 88999999999886  9999


Q ss_pred             eCCCcEEEEeCCC-CeEE-E--EEeCCCeeEEE--Ec-CCCEEEEEc-CCcEEEEEcCCC------cee-eeeCCCC---
Q 021744          169 SKDETVRVWDCAS-GQCA-G--VINLGGEVGCM--IS-EGPWIFIGV-TNFVKAWNTQTN------TDL-SLSGPVG---  230 (308)
Q Consensus       169 s~dg~v~~wd~~~-~~~~-~--~~~~~~~v~~~--~~-~~~~l~~~~-d~~i~~wd~~~~------~~~-~~~~~~~---  230 (308)
                      +.|+.|++||+++ ++.. .  ...+...+.++  .+ +++++++++ ++.|++||++..      +.. .+..|..   
T Consensus       167 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (342)
T 1yfq_A          167 MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK  246 (342)
T ss_dssp             ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTT
T ss_pred             eCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccc
Confidence            9999999999998 5432 2  22256667766  46 788888776 999999999876      444 6677755   


Q ss_pred             ------CEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecccc-CCCeEE-EEecCCCeEEEee
Q 021744          231 ------QVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH-TDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       231 ------~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~-~~s~d~~~l~~s~  291 (308)
                            .|.+++|+|+  +|++++.||.|++||+.++    +++..+..| ...|.+ +  |++++|++++
T Consensus       247 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~h~~~v~~~~--~~~~~l~s~s  311 (342)
T 1yfq_A          247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR----KKIKNFAKFNEDSVVKIA--CSDNILCLAT  311 (342)
T ss_dssp             CCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT----EEEEECCCCSSSEEEEEE--ECSSEEEEEE
T ss_pred             ccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH----hHhhhhhcccCCCceEec--CCCCeEEEEe
Confidence                  9999999998  8999999999999999987    778889888 999988 7  9999988655

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.6e-31  Score=229.93  Aligned_cols=228  Identities=10%  Similarity=-0.045  Sum_probs=169.8

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-e--eccCCCcEEEEECCCCCCcc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-R--NNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~--s~~~d~~i~vwd~~~~~~~~  101 (308)
                      ..|++++.|+++|+|+....+.... .....  .......+...  .++|+|||++ +  +++.|++|+|||+++++...
T Consensus        95 ~~l~s~~~d~~~r~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~  171 (365)
T 4h5i_A           95 TKITQGKGNKHLRKFKYDKVNDQLE-FLTSV--DFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF  171 (365)
T ss_dssp             HHHHHTSCCCCEEEEEEETTTTEEE-EEEEE--CSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred             cEEEEecCCCcEEEEEecCCCceEE-Eeeee--ceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence            3455667789999999765421100 00000  01111222222  7999999998 4  56689999999998887653


Q ss_pred             cccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceee-eEeeCcccceEEEEEeCCCCEEEEeeCCC----cEEE
Q 021744          102 INNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLL-TQLEGHQKVVSGITLPSGSDKLYSGSKDE----TVRV  176 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~s~dg----~v~~  176 (308)
                      .  ..|...+..+.|+|++..+..+.++.+++|+..++.... ....+|...|.+++|+|+++++++++.|+    .+++
T Consensus       172 ~--~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~  249 (365)
T 4h5i_A          172 E--IETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTK  249 (365)
T ss_dssp             E--EECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEE
T ss_pred             E--eCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEee
Confidence            2  346667999999999988544456667777777663332 34567899999999999999999999887    6889


Q ss_pred             EeCCCCeEE----EEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-e-eeCCCCCEEEEEEeCC--EEEE
Q 021744          177 WDCASGQCA----GVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-S-LSGPVGQVYAMAVGND--LLFA  244 (308)
Q Consensus       177 wd~~~~~~~----~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~-~~~~~~~v~~~~~~~~--~l~~  244 (308)
                      |++......    ..+. +...+.++  +|++++|++|+ |++|++||+++++++ . +.+|...|++++|+||  +|++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS  329 (365)
T 4h5i_A          250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVAS  329 (365)
T ss_dssp             EEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEE
T ss_pred             cccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEE
Confidence            998876542    2233 66777766  58999999877 999999999999887 4 4789999999999999  9999


Q ss_pred             EcCCCeEEEEEcCCC
Q 021744          245 GTQDGAILAWKFNVT  259 (308)
Q Consensus       245 g~~dg~i~iwd~~~~  259 (308)
                      |+.|++|+|||++..
T Consensus       330 ~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          330 VSAANTIHIIKLPLN  344 (365)
T ss_dssp             EETTSEEEEEECCTT
T ss_pred             EeCCCeEEEEEcCCC
Confidence            999999999999754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.8e-30  Score=220.31  Aligned_cols=245  Identities=11%  Similarity=0.079  Sum_probs=193.9

Q ss_pred             Cccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCc---ccccceeeeeeeeeeeec--CCce-EEeeCCCeEEE
Q 021744           63 AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS---NINNRAVIKTDILCRNWV--QGNC-MYGEKCKFLHS  133 (308)
Q Consensus        63 ~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~-~~g~~d~~i~i  133 (308)
                      .+.+|...  +++|+|++.+ ++++.|++|++||+.++...   ......|...+.++.|++  ++.. ++++.|+.|++
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            34688877  8999999999 99999999999999765432   223345777799999998  4655 89999999999


Q ss_pred             EEcCCCc--------eeeeEeeCcccceEEEEEeCC--CCEEEEeeCCCcEEEEeCCCCeEEEEEe--------------
Q 021744          134 WTVGDGF--------KLLTQLEGHQKVVSGITLPSG--SDKLYSGSKDETVRVWDCASGQCAGVIN--------------  189 (308)
Q Consensus       134 wd~~~~~--------~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~dg~v~~wd~~~~~~~~~~~--------------  189 (308)
                      ||+.++.        +.+..+.+|...|.+++|+|+  +.++++++.|+.|++||+++++.+..+.              
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  165 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN  165 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred             EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence            9998763        447778899999999999999  9999999999999999999876543332              


Q ss_pred             CCCeeEEE--EcC---CCEEEEEc-CCcEEEEEcCCCcee---eeeCCCCCEEEEEEeCC------EEEEEcCCCeEEEE
Q 021744          190 LGGEVGCM--ISE---GPWIFIGV-TNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGND------LLFAGTQDGAILAW  254 (308)
Q Consensus       190 ~~~~v~~~--~~~---~~~l~~~~-d~~i~~wd~~~~~~~---~~~~~~~~v~~~~~~~~------~l~~g~~dg~i~iw  254 (308)
                      +...+.++  .++   +.+++++. ++.+.+|+...++..   .+.+|...|++++|+|+      +|++++.||.|++|
T Consensus       166 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iw  245 (351)
T 3f3f_A          166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF  245 (351)
T ss_dssp             CSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEE
T ss_pred             cccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEE
Confidence            23344554  343   77888766 888888888777642   67789999999999998      69999999999999


Q ss_pred             EcCCCCc------------------------------------------ccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          255 KFNVTTN------------------------------------------CFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       255 d~~~~~~------------------------------------------~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      |++.+..                                          ..+++..+.+|...|++ +|+|++++|++++
T Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~  325 (351)
T 3f3f_A          246 KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAG  325 (351)
T ss_dssp             EEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEE
T ss_pred             eCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEec
Confidence            9986411                                          01456667789999999 9999999998766


Q ss_pred             ---ceEEEEeecCceeEEe
Q 021744          292 ---SFIMFIGQNNKGVVCY  307 (308)
Q Consensus       292 ---s~~i~~~~~~~~~~~~  307 (308)
                         .+.+|-....+.+.|+
T Consensus       326 ~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          326 DDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             TTSCEEEEEECTTSCEEEE
T ss_pred             CCCcEEEEecCcCcchhhe
Confidence               4666666676777664

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.98  E-value=1.3e-30  Score=222.55  Aligned_cols=231  Identities=13%  Similarity=0.145  Sum_probs=187.4

Q ss_pred             cccccc--eeEEecCCCe--eeccC---CCcEEEEECCCCCCcccccceeeeeeeeeeeecC---Cc-eEEeeCCCeEEE
Q 021744           65 TANGAA--AKRFANNTWG--RNNNF---NNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQ---GN-CMYGEKCKFLHS  133 (308)
Q Consensus        65 ~gh~~~--~i~~s~~g~~--~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~g~~d~~i~i  133 (308)
                      .+|...  +++|+|++..  ++++.   |++|++||+.+++........|...+.++.|+++   +. +++++.|+.|++
T Consensus        15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i   94 (357)
T 3i2n_A           15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHI   94 (357)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEE
T ss_pred             cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEE
Confidence            467777  8999999976  67776   9999999998876654444567778999999998   44 489999999999


Q ss_pred             EEcCCCceeeeEeeCcccceEEEEE------eCCCCEEEEeeCCCcEEEEeCCCCe-EEEEEe-CC----CeeEEEE---
Q 021744          134 WTVGDGFKLLTQLEGHQKVVSGITL------PSGSDKLYSGSKDETVRVWDCASGQ-CAGVIN-LG----GEVGCMI---  198 (308)
Q Consensus       134 wd~~~~~~~~~~~~~h~~~v~~~~~------~~~~~~l~s~s~dg~v~~wd~~~~~-~~~~~~-~~----~~v~~~~---  198 (308)
                      ||+.++...+..+.+|...|.+++|      +|++++|++++.|+.|++||+++++ .+..+. +.    ..+.++.   
T Consensus        95 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  174 (357)
T 3i2n_A           95 WNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGN  174 (357)
T ss_dssp             ECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEEC
T ss_pred             EeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEe
Confidence            9999883378899999999999954      6789999999999999999999887 677775 22    2566553   


Q ss_pred             ---cCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeC---C--EEEEEcCCCeEEEEEcCCCCcccccceec
Q 021744          199 ---SEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN---D--LLFAGTQDGAILAWKFNVTTNCFEPAASL  269 (308)
Q Consensus       199 ---~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~---~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~  269 (308)
                         ++++++++++ |+.|++||+++++......|...|.+++|+|   +  +|++++.||.|++||++++    +++..+
T Consensus       175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~  250 (357)
T 3i2n_A          175 AYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ----HPTKGF  250 (357)
T ss_dssp             CCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE----ETTTEE
T ss_pred             ccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC----Ccccce
Confidence               7889999877 8999999999999887788899999999998   6  9999999999999999986    444444


Q ss_pred             c-----ccCCCeEE-EEecCCC-eEEEee-ceEEEEee
Q 021744          270 K-----VHTDSNRA-HFSRDVT-SLLGSV-SFIMFIGQ  299 (308)
Q Consensus       270 ~-----~~~~~v~~-~~s~d~~-~l~~s~-s~~i~~~~  299 (308)
                      .     .|...+.+ +|+|+++ ++++++ +..|.++.
T Consensus       251 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  288 (357)
T 3i2n_A          251 ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK  288 (357)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred             eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEee
Confidence            3     89999999 9999998 566554 44444443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.98  E-value=9e-32  Score=264.84  Aligned_cols=255  Identities=15%  Similarity=0.142  Sum_probs=217.6

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .+.++++++.|+.|++|+...+           . ......+|...  +++|+|++++ ++++.|++|++||+.+++.. 
T Consensus       972 ~g~~l~~g~~~g~i~i~d~~~~-----------~-~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~- 1038 (1249)
T 3sfz_A          972 HLEYVAFGDEDGAIKIIELPNN-----------R-VFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV- 1038 (1249)
T ss_dssp             TSSEEEEEETTSCCEEEETTTT-----------S-CEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE-
T ss_pred             CCCEEEEEcCCCCEEEEEcCCC-----------c-eeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE-
Confidence            4678999999999999998876           1 12223466666  8999999999 99999999999999887655 


Q ss_pred             cccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744          102 INNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~  181 (308)
                       ....|...+..+.+++++..++++.|+.|++||+.++ +....+.+|...|.+++|+|+++++++++.|++|++||+.+
T Consensus      1039 -~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~ 1116 (1249)
T 3sfz_A         1039 -FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG-RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL 1116 (1249)
T ss_dssp             -CCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTT-CCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSS
T ss_pred             -EEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCC-ceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence             4456777799999999988899999999999999999 78889999999999999999999999999999999999999


Q ss_pred             CeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-ee---------eCCCCCEEEEEEeCC--EEEEE
Q 021744          182 GQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SL---------SGPVGQVYAMAVGND--LLFAG  245 (308)
Q Consensus       182 ~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~---------~~~~~~v~~~~~~~~--~l~~g  245 (308)
                      ++++..+. |...+.++  ++++++|++++ |+.|++||+.+++.. .+         ..|...|++++|+|+  +++++
T Consensus      1117 ~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~ 1196 (1249)
T 3sfz_A         1117 LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196 (1249)
T ss_dssp             SSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEE
T ss_pred             cceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEEC
Confidence            98888777 67777766  57899999877 999999999988765 33         578899999999999  77777


Q ss_pred             cCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEeec
Q 021744          246 TQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQN  300 (308)
Q Consensus       246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~~  300 (308)
                      +  |.|++||+.++    +.+..+..|...+.+ +|+||+++|+++. +..++++.-
T Consensus      1197 ~--g~v~vwd~~~g----~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A         1197 G--GYLKWWNVATG----DSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp             S--SSEEEBCSSSC----BCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred             C--CeEEEEECCCC----ceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence            5  89999999987    778888889999999 9999999988655 667776653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.98  E-value=3e-30  Score=226.14  Aligned_cols=236  Identities=16%  Similarity=0.250  Sum_probs=185.8

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCcccc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      .+.+||+|+.|++|++||..++           . ......+|.....++++++.. ++|+.|+++++||..........
T Consensus       158 dg~~lasgs~Dg~v~iWd~~~~-----------~-~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~  225 (420)
T 4gga_A          158 EGNYLAVGTSSAEVQLWDVQQQ-----------K-RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVAT  225 (420)
T ss_dssp             TSSEEEEEETTSCEEEEETTTT-----------E-EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             CCCEEEEEECCCeEEEEEcCCC-----------c-EEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEE
Confidence            4689999999999999999876           1 122345676665567778888 99999999999999776555445


Q ss_pred             cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCc---eeeeEeeCcccceEEEEEeCCCC-EEEE--eeCCCcEEE
Q 021744          104 NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGF---KLLTQLEGHQKVVSGITLPSGSD-KLYS--GSKDETVRV  176 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~---~~~~~~~~h~~~v~~~~~~~~~~-~l~s--~s~dg~v~~  176 (308)
                      ...|...+..+.+.+++.. ++++.|+.+++|+..++.   ..+.....|...|.+++|+|.+. .+++  |+.|++|++
T Consensus       226 ~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~i  305 (420)
T 4gga_A          226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI  305 (420)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEE
T ss_pred             ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEE
Confidence            5677777899999999976 889999999999998763   24566778999999999999764 4444  568999999


Q ss_pred             EeCCCCeEEEEEeCCCeeEEE--EcCCCEEEEE--c-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCC
Q 021744          177 WDCASGQCAGVINLGGEVGCM--ISEGPWIFIG--V-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQD  248 (308)
Q Consensus       177 wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~--~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~d  248 (308)
                      ||+++++++..+.....+.++  .++++.++++  . |+.|++||+.+++++ .+.+|.+.|++++|+|+  +|++|+.|
T Consensus       306 wd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D  385 (420)
T 4gga_A          306 WNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD  385 (420)
T ss_dssp             EETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             EeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence            999999999999866666554  5777777753  2 899999999999888 88999999999999999  99999999


Q ss_pred             CeEEEEEcCCCCcccccceeccccCCCe
Q 021744          249 GAILAWKFNVTTNCFEPAASLKVHTDSN  276 (308)
Q Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~~~~~v  276 (308)
                      ++|+|||+...    .+....+.+....
T Consensus       386 ~tvriWdv~~~----~~~~~~~~~~~~~  409 (420)
T 4gga_A          386 ETLRLWRCFEL----DPARRREREKASA  409 (420)
T ss_dssp             TEEEEECCSCS----SCC----------
T ss_pred             CeEEEEECCCC----CccchhhhccCCc
Confidence            99999999875    4444444444333

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.98  E-value=1e-29  Score=220.82  Aligned_cols=268  Identities=13%  Similarity=0.155  Sum_probs=196.9

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccc-cCCCCCCccccccc--eeEEec-CCCe-eeccCCCcEEEEECCCCCC
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHR-ELPLPPAATANGAA--AKRFAN-NTWG-RNNNFNNHSNNYRAGNSKN   99 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~-~~~~~~~~~gh~~~--~i~~s~-~g~~-~s~~~d~~i~vwd~~~~~~   99 (308)
                      .+.+||+++.|++|++|+.............. .........+|...  +++|+| ++.+ ++++.|++|++||+.+++.
T Consensus        55 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  134 (408)
T 4a11_B           55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT  134 (408)
T ss_dssp             TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc
Confidence            46789999999999999988762211100000 00011122356666  899999 6667 9999999999999987765


Q ss_pred             cccccceeeeeeeeeeeecCC---ce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCC-EEEEeeCCCcE
Q 021744          100 SNINNRAVIKTDILCRNWVQG---NC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETV  174 (308)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~---~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~v  174 (308)
                      .  ....+...+..+.+.+.+   .. ++++.|+.|++||+.++ +.+..+.+|...|.+++|+|++. ++++++.||.|
T Consensus       135 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i  211 (408)
T 4a11_B          135 A--DVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG-SCSHILQGHRQEILAVSWSPRYDYILATASADSRV  211 (408)
T ss_dssp             E--EEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS-CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred             c--eeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc-ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcE
Confidence            4  222344456777777754   24 88999999999999988 78889999999999999999998 58999999999


Q ss_pred             EEEeCCCCe-EEEEE----------------eCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCC-----
Q 021744          175 RVWDCASGQ-CAGVI----------------NLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGP-----  228 (308)
Q Consensus       175 ~~wd~~~~~-~~~~~----------------~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~-----  228 (308)
                      ++||+++++ ++..+                .+...+.++  .+++++|++++ |+.|++||+++++.. ....+     
T Consensus       212 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  291 (408)
T 4a11_B          212 KLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNS  291 (408)
T ss_dssp             EEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCC
T ss_pred             EEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccc
Confidence            999998765 34433                245566665  47888888776 999999999988765 22211     


Q ss_pred             -CCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          229 -VGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       229 -~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                       ..........+. .+++++.++.|++||+.++    +++..+.+|...|.+ +|+|++++|++++ +..|.++.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~  362 (408)
T 4a11_B          292 KKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG----EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWV  362 (408)
T ss_dssp             SSCCCCEECCSSSSCEEEEEETTEEEEEETTTC----CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             cccceeEEecCCCceEEEEecCCEEEEEECcCC----cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEe
Confidence             111222222333 7777788999999999987    778889999999999 9999999998666 44444443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.5e-30  Score=219.20  Aligned_cols=239  Identities=13%  Similarity=0.051  Sum_probs=187.9

Q ss_pred             CCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC-cccccceeeeeeeeeeeecC--Cce-EEeeCCCeEEEE
Q 021744           62 PAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN-SNINNRAVIKTDILCRNWVQ--GNC-MYGEKCKFLHSW  134 (308)
Q Consensus        62 ~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~-~~g~~d~~i~iw  134 (308)
                      ..+.+|...  +++|+|++.+ ++|+.|++|+|||+..... .......|...+.++.|+++  +.. ++++.|+.|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw   84 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   84 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence            345688888  8999999999 9999999999999964321 11234567777999999876  655 899999999999


Q ss_pred             EcCCCc-eeeeEeeCcccceEEEEEeCC--CCEEEEeeCCCcEEEEeCCCCeEE--EEE-eCCCeeEEE--Ec-------
Q 021744          135 TVGDGF-KLLTQLEGHQKVVSGITLPSG--SDKLYSGSKDETVRVWDCASGQCA--GVI-NLGGEVGCM--IS-------  199 (308)
Q Consensus       135 d~~~~~-~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~dg~v~~wd~~~~~~~--~~~-~~~~~v~~~--~~-------  199 (308)
                      |+.++. ..+..+.+|...|.+++|+|+  +.+|++++.|+.|++||+++....  ..+ .+...+.++  .+       
T Consensus        85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  164 (379)
T 3jrp_A           85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  164 (379)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-----
T ss_pred             EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccc
Confidence            999882 267788889999999999999  899999999999999999987432  233 367777776  34       


Q ss_pred             ------CCCEEEEEc-CCcEEEEEcCCCce----e-eeeCCCCCEEEEEEeCC-----EEEEEcCCCeEEEEEcCCCCcc
Q 021744          200 ------EGPWIFIGV-TNFVKAWNTQTNTD----L-SLSGPVGQVYAMAVGND-----LLFAGTQDGAILAWKFNVTTNC  262 (308)
Q Consensus       200 ------~~~~l~~~~-d~~i~~wd~~~~~~----~-~~~~~~~~v~~~~~~~~-----~l~~g~~dg~i~iwd~~~~~~~  262 (308)
                            ++.++++++ |+.|++||+++++.    . .+.+|...|.+++|+|+     +|++++.||.|++||++++...
T Consensus       165 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~  244 (379)
T 3jrp_A          165 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP  244 (379)
T ss_dssp             -----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred             cccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc
Confidence                  478888776 99999999987642    2 57789999999999985     8999999999999999986320


Q ss_pred             -cccceeccccCCCeEE-EEecCCCeEEEee---ceEEEEeec
Q 021744          263 -FEPAASLKVHTDSNRA-HFSRDVTSLLGSV---SFIMFIGQN  300 (308)
Q Consensus       263 -~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~---s~~i~~~~~  300 (308)
                       ...+.....|...+.+ +|+|++++|++++   .+.+|-...
T Consensus       245 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          245 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             CEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             ceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence             0122333458889999 9999999998655   455555443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1.2e-30  Score=226.78  Aligned_cols=221  Identities=11%  Similarity=-0.009  Sum_probs=157.8

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCc----ccccceeeeeeeeeeeec--------CCce-EEeeCCCeEEEEEc
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS----NINNRAVIKTDILCRNWV--------QGNC-MYGEKCKFLHSWTV  136 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~--------~~~~-~~g~~d~~i~iwd~  136 (308)
                      ...+++++.. ++++.|++|||||+.+++..    .....+|...|..+.|+|        ++.. ++++.|++|+|||+
T Consensus        94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~  173 (393)
T 4gq1_A           94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL  173 (393)
T ss_dssp             ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred             eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence            3455667777 99999999999999876532    234567888999999987        5555 89999999999999


Q ss_pred             CCCceeeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCCeEEEEEe--------------------------
Q 021744          137 GDGFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVIN--------------------------  189 (308)
Q Consensus       137 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~~~~~~~~--------------------------  189 (308)
                      .++ ..+..+.+|...|.+++|+|++ .+|++++.|++|++||+++++......                          
T Consensus       174 ~~~-~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  252 (393)
T 4gq1_A          174 TDE-GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG  252 (393)
T ss_dssp             ETT-EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred             CCC-ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence            888 6677777899999999999987 479999999999999999876554332                          


Q ss_pred             CCCeeEEE--E-cCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEE------------------EEeC--C--EE
Q 021744          190 LGGEVGCM--I-SEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAM------------------AVGN--D--LL  242 (308)
Q Consensus       190 ~~~~v~~~--~-~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~------------------~~~~--~--~l  242 (308)
                      +...+.++  + ++++.+++++ |+++++||+.+++.. .+..|...+..+                  .++|  +  ++
T Consensus       253 ~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (393)
T 4gq1_A          253 IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFA  332 (393)
T ss_dssp             CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEE
T ss_pred             ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEE
Confidence            12223333  2 6788998877 999999999877644 343443333332                  3333  2  67


Q ss_pred             EEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEE
Q 021744          243 FAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMF  296 (308)
Q Consensus       243 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~  296 (308)
                      ++|+.||.|++||+.++    +.+..+..|..+|++ +|+|||++|+++....+.
T Consensus       333 ~sgs~Dg~V~lwd~~~~----~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~  383 (393)
T 4gq1_A          333 TAHSQHGLIQLINTYEK----DSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVL  383 (393)
T ss_dssp             EEETTTTEEEEEETTCT----TCCEEEEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred             EEECCCCEEEEEECCCC----cEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            88999999999999987    666777788899999 999999999977644443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=6e-30  Score=219.85  Aligned_cols=225  Identities=10%  Similarity=0.025  Sum_probs=186.1

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCC-cccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceee--eE
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKN-SNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLL--TQ  145 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~--~~  145 (308)
                      +++|+|++++ ++++.|++|++||+.+++. .......|...+..+.|++++.. ++++.|+.|++||+.++ +..  ..
T Consensus        13 ~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~   91 (372)
T 1k8k_C           13 CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR-TWKPTLV   91 (372)
T ss_dssp             EEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT-EEEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC-eeeeeEE
Confidence            7999999999 9999999999999987641 11234457777999999999976 88999999999999887 433  33


Q ss_pred             eeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeE---EEEEe--CCCeeEEE--EcCCCEEEEEc-CCcEEEEEc
Q 021744          146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC---AGVIN--LGGEVGCM--ISEGPWIFIGV-TNFVKAWNT  217 (308)
Q Consensus       146 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~---~~~~~--~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~  217 (308)
                      +..|...|.+++|+|++++|++++.|+.|++||++.++.   ...+.  +...+.++  .++++++++++ |+.|++||+
T Consensus        92 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~  171 (372)
T 1k8k_C           92 ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA  171 (372)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEc
Confidence            467999999999999999999999999999999998763   33333  56677776  47888888776 999999996


Q ss_pred             C------------------CCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCe
Q 021744          218 Q------------------TNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSN  276 (308)
Q Consensus       218 ~------------------~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v  276 (308)
                      +                  +++.. .+..|...|.+++|+|+  +|++++.|+.|++||++++    +++..+..|...+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~v  247 (372)
T 1k8k_C          172 YIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK----MAVATLASETLPL  247 (372)
T ss_dssp             CCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT----TEEEEEECSSCCE
T ss_pred             ccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC----ceeEEEccCCCCe
Confidence            4                  45555 67789999999999999  9999999999999999987    7788888999999


Q ss_pred             EE-EEecCCCeEEEeec--eEEEEeec
Q 021744          277 RA-HFSRDVTSLLGSVS--FIMFIGQN  300 (308)
Q Consensus       277 ~~-~~s~d~~~l~~s~s--~~i~~~~~  300 (308)
                      .+ +|+|++.+++++.+  +.+|....
T Consensus       248 ~~~~~~~~~~~l~~~~d~~i~i~~~~~  274 (372)
T 1k8k_C          248 LAVTFITESSLVAAGHDCFPVLFTYDS  274 (372)
T ss_dssp             EEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             EEEEEecCCCEEEEEeCCeEEEEEccC
Confidence            99 99999998887664  45555444

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.2e-30  Score=217.80  Aligned_cols=243  Identities=11%  Similarity=0.068  Sum_probs=174.9

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCeeeccCCCcEEEEECC---------
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAG---------   95 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~~s~~~d~~i~vwd~~---------   95 (308)
                      .+.++++|+.|++|++||..++..           ... +......++.++|+  .++++.|++|++|+..         
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~-----------~~~-~~~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~  112 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKT-----------ITT-ITTPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSK  112 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSC-----------EEE-EEEECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETT
T ss_pred             CCCEEEEECCCCcEEEEECCCCcE-----------EEE-EecCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecC
Confidence            357899999999999999987611           000 00000014677777  8999999999999775         


Q ss_pred             CCCCcccccceeeeeeeeeeeec--CCce-EEeeCCCeEEEEEcCCCceeeeEee-CcccceEEEEEeCCCCEEEEeeCC
Q 021744           96 NSKNSNINNRAVIKTDILCRNWV--QGNC-MYGEKCKFLHSWTVGDGFKLLTQLE-GHQKVVSGITLPSGSDKLYSGSKD  171 (308)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d  171 (308)
                      +++.+......|...+..+.++|  ++.. ++++.|+.|++||++++ +....+. .|...|.+++|+|++.+|++|+.|
T Consensus       113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d  191 (343)
T 3lrv_A          113 TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD-SQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD  191 (343)
T ss_dssp             TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS-CEEEEECCCSSCCCCEEEECTTSCEEEEECTT
T ss_pred             CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC-cEEEEEecCCCCceEEEEECCCCCEEEEEcCC
Confidence            22222222233446689999999  8876 88999999999999988 5555553 456689999999999999999999


Q ss_pred             CcEEEEeCCCCeEE-EEEe--CCCeeEEE--EcCCCEEEEEcCCcEEEEEcCCCcee-eeeC---CCCCE--EEEEEeCC
Q 021744          172 ETVRVWDCASGQCA-GVIN--LGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDL-SLSG---PVGQV--YAMAVGND  240 (308)
Q Consensus       172 g~v~~wd~~~~~~~-~~~~--~~~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~~~~-~~~~---~~~~v--~~~~~~~~  240 (308)
                      +.|++||+++++.+ ..+.  |..++.++  .+++.+|++++++.|++||+++.+.. .+..   |...+  .+++|+|+
T Consensus       192 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (343)
T 3lrv_A          192 GILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS  271 (343)
T ss_dssp             SCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred             CEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCC
Confidence            99999999998877 6665  57888876  47899999888779999999988764 3332   33344  36999999


Q ss_pred             --EEEEEcC-CCeEEEEEcCCCCcccccceeccccCCCeEE-EEec---CCCeEEEe
Q 021744          241 --LLFAGTQ-DGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR---DVTSLLGS  290 (308)
Q Consensus       241 --~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~---d~~~l~~s  290 (308)
                        +|++++. |+.|++|++......++.        .++.. .|++   +.+.++++
T Consensus       272 g~~l~~~s~~d~~i~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~  320 (343)
T 3lrv_A          272 GKNMIAYSNESNSLTIYKFDKKTKNWTK--------DEESALCLQSDTADFTDMDVV  320 (343)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTTCSEEE--------EEEEECCC----CCCCEEEEE
T ss_pred             CCEEEEecCCCCcEEEEEEcccccceEe--------cCceeEecCccccccceeEEE
Confidence              8888888 999999999765321111        34555 6666   66666543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=7e-30  Score=224.95  Aligned_cols=228  Identities=8%  Similarity=0.138  Sum_probs=176.5

Q ss_pred             ccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC----------cccccceee------------eeeeeeeeecCC
Q 021744           66 ANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN----------SNINNRAVI------------KTDILCRNWVQG  120 (308)
Q Consensus        66 gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~----------~~~~~~~~~------------~~~~~~~~~~~~  120 (308)
                      .+.+.  +++|+|+|.+ |+|+.|++|+|||+.+++.          .......|.            ..+..+.|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            34444  8999999999 9999999999999987652          122334565            668999999997


Q ss_pred             --c-eEEeeCCCeEEEEEcCCCceee---------------------------------------eE-eeCcccceEEEE
Q 021744          121 --N-CMYGEKCKFLHSWTVGDGFKLL---------------------------------------TQ-LEGHQKVVSGIT  157 (308)
Q Consensus       121 --~-~~~g~~d~~i~iwd~~~~~~~~---------------------------------------~~-~~~h~~~v~~~~  157 (308)
                        . +++++.|+.|++||+.++ +..                                       .. +.+|...|.+++
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISER-DKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEE-EEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CcceEEEeCCCCeEEEEecccc-cCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence              3 489999999999999764 221                                       12 367999999999


Q ss_pred             EeCCCCEEEEeeCCCcEEEEeCCC-CeEEEEE--------eCCCeeEEE--EcCC-CEEEEEc-CCcEEEEEcCCCce--
Q 021744          158 LPSGSDKLYSGSKDETVRVWDCAS-GQCAGVI--------NLGGEVGCM--ISEG-PWIFIGV-TNFVKAWNTQTNTD--  222 (308)
Q Consensus       158 ~~~~~~~l~s~s~dg~v~~wd~~~-~~~~~~~--------~~~~~v~~~--~~~~-~~l~~~~-d~~i~~wd~~~~~~--  222 (308)
                      |+|++++|+++ .|++|++||+++ ++.+..+        .+...+.++  .+++ ++|++++ |+.|++||+++++.  
T Consensus       185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            99999999998 799999999994 5555544        266667776  4666 7888776 99999999999875  


Q ss_pred             ---eeeeCCCC------------CEEEEEEeCC--EEEEEcCCCeEEEEEcCC-CCcccccceeccccCCCeE-------
Q 021744          223 ---LSLSGPVG------------QVYAMAVGND--LLFAGTQDGAILAWKFNV-TTNCFEPAASLKVHTDSNR-------  277 (308)
Q Consensus       223 ---~~~~~~~~------------~v~~~~~~~~--~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~v~-------  277 (308)
                         ..+..|..            .|.+++|+|+  +|++++. +.|++||++. +    +++..+..|...+.       
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~----~~~~~~~~~~~~~~~l~~~~~  338 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN----RPVETYQVHEYLRSKLCSLYE  338 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS----SCSCCEESCGGGTTTHHHHHH
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc----cccceeecccccccccccccc
Confidence               36777775            8999999999  8888888 9999999987 4    66777777764332       


Q ss_pred             ---------EEEecCCCeEEEee-ceEEEEeec
Q 021744          278 ---------AHFSRDVTSLLGSV-SFIMFIGQN  300 (308)
Q Consensus       278 ---------~~~s~d~~~l~~s~-s~~i~~~~~  300 (308)
                               .+|+|++++|++++ +..|+++..
T Consensus       339 ~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~  371 (447)
T 3dw8_B          339 NDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR  371 (447)
T ss_dssp             TSGGGCCCCEEECTTSSEEEEECSTTEEEEEET
T ss_pred             ccccccceEEEECCCCCEEEEeccCCEEEEEEc
Confidence                     59999999998655 666666553

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=5.9e-30  Score=217.15  Aligned_cols=235  Identities=11%  Similarity=0.096  Sum_probs=181.0

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEec--CCCe-eeccCCCcEEEEECCCCCCc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFAN--NTWG-RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~--~g~~-~s~~~d~~i~vwd~~~~~~~  100 (308)
                      +.+||+++.|++|++|+.......        ......+.+|...  +++|+|  ++.+ ++++.|++|++||+.+++..
T Consensus        23 ~~~l~~~~~dg~i~iw~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~   94 (351)
T 3f3f_A           23 GRHVATCSSDQHIKVFKLDKDTSN--------WELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEE   94 (351)
T ss_dssp             SSEEEEEETTSEEEEEEECSSSCC--------EEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCT
T ss_pred             CCEEEEeeCCCeEEEEECCCCCCc--------ceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccc
Confidence            568999999999999998865110        0111233467666  899999  5888 99999999999999876422


Q ss_pred             --------ccccceeeeeeeeeeeecC--Cce-EEeeCCCeEEEEEcCCCceeeeEee-------------CcccceEEE
Q 021744          101 --------NINNRAVIKTDILCRNWVQ--GNC-MYGEKCKFLHSWTVGDGFKLLTQLE-------------GHQKVVSGI  156 (308)
Q Consensus       101 --------~~~~~~~~~~~~~~~~~~~--~~~-~~g~~d~~i~iwd~~~~~~~~~~~~-------------~h~~~v~~~  156 (308)
                              ......|...+..+.|+|+  +.. ++++.|+.|++||+.++ +.+..+.             +|...+.++
T Consensus        95 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (351)
T 3f3f_A           95 CSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEP-SDLRSWTLTSEMKVLSIPPANHLQSDFCL  173 (351)
T ss_dssp             TSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSST-TCTTCCEEEEEEESCSCCCSSCSCCCEEE
T ss_pred             ccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCCh-HHhccccccccccccccccCCcccceeEE
Confidence                    1223456667999999998  765 88999999999999877 3333322             688899999


Q ss_pred             EEeCC---CCEEEEeeCCCcEEEEeCCCCeE--EEEEe-CCCeeEEE--EcCC----CEEEEEc-CCcEEEEEcCCC---
Q 021744          157 TLPSG---SDKLYSGSKDETVRVWDCASGQC--AGVIN-LGGEVGCM--ISEG----PWIFIGV-TNFVKAWNTQTN---  220 (308)
Q Consensus       157 ~~~~~---~~~l~s~s~dg~v~~wd~~~~~~--~~~~~-~~~~v~~~--~~~~----~~l~~~~-d~~i~~wd~~~~---  220 (308)
                      +|+|+   +.++++++.|+.+.+|+...++.  +..+. +...+.++  .+++    ++|++++ |+.|++||++++   
T Consensus       174 ~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  253 (351)
T 3f3f_A          174 SWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSP  253 (351)
T ss_dssp             EECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--
T ss_pred             EeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCc
Confidence            99997   89999999999999998887765  44444 67778776  3565    6788776 999999999874   


Q ss_pred             -------------------------------------------cee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEE
Q 021744          221 -------------------------------------------TDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAW  254 (308)
Q Consensus       221 -------------------------------------------~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iw  254 (308)
                                                                 +.. .+.+|...|++++|+|+  +|++++.||.|++|
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw  333 (351)
T 3f3f_A          254 LASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW  333 (351)
T ss_dssp             -------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred             cccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEE
Confidence                                                       233 56789999999999999  89999999999999


Q ss_pred             EcCCCCcccccceecc
Q 021744          255 KFNVTTNCFEPAASLK  270 (308)
Q Consensus       255 d~~~~~~~~~~~~~~~  270 (308)
                      |+.++.. ++.+..+.
T Consensus       334 ~~~~~~~-~~~~~~~~  348 (351)
T 3f3f_A          334 KATYSNE-FKCMSVIT  348 (351)
T ss_dssp             EECTTSC-EEEEEEEC
T ss_pred             ecCcCcc-hhheeehc
Confidence            9998632 23444443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1.5e-29  Score=220.44  Aligned_cols=221  Identities=12%  Similarity=0.154  Sum_probs=183.9

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .+.+|++++.|+.|++||..++.            ....+.+|...  +++|  ++.. ++++.|++|++||+.......
T Consensus       145 ~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~  210 (401)
T 4aez_A          145 DGSFLSVGLGNGLVDIYDVESQT------------KLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQI  210 (401)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCC------------EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEE
T ss_pred             CCCEEEEECCCCeEEEEECcCCe------------EEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCccee
Confidence            46789999999999999988761            11223466666  5666  5668 999999999999998555444


Q ss_pred             cccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCC-CEEEEee--CCCcEEEE
Q 021744          102 INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS-DKLYSGS--KDETVRVW  177 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s--~dg~v~~w  177 (308)
                      .....|...+..+.|++++.. ++++.|+.|++||+.+. +.+..+.+|...|.+++|+|++ .++++++  .|+.|++|
T Consensus       211 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~  289 (401)
T 4aez_A          211 GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS-IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW  289 (401)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS-SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred             eEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC-CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence            455667778999999999876 88999999999999998 7888889999999999999976 4556655  79999999


Q ss_pred             eCCCCeEEEEEeCCCeeEEE--EcCCCEEEE--Ec-CCcEEEEEcCCCcee---eeeCCCCCEEEEEEeCC--EEEEEcC
Q 021744          178 DCASGQCAGVINLGGEVGCM--ISEGPWIFI--GV-TNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGND--LLFAGTQ  247 (308)
Q Consensus       178 d~~~~~~~~~~~~~~~v~~~--~~~~~~l~~--~~-d~~i~~wd~~~~~~~---~~~~~~~~v~~~~~~~~--~l~~g~~  247 (308)
                      |+++++++..+.+...+.++  .++++++++  |. |+.|++||+.+++..   .+.+|...|.+++|+|+  +|++++.
T Consensus       290 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~  369 (401)
T 4aez_A          290 NAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS  369 (401)
T ss_dssp             ETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT
T ss_pred             ECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence            99999999999988888776  478888886  43 999999999987654   46789999999999999  9999999


Q ss_pred             CCeEEEEEcCCCC
Q 021744          248 DGAILAWKFNVTT  260 (308)
Q Consensus       248 dg~i~iwd~~~~~  260 (308)
                      ||.|++|++.+++
T Consensus       370 dg~i~iw~~~~~~  382 (401)
T 4aez_A          370 DENLKFWRVYDGD  382 (401)
T ss_dssp             TSEEEEEECCC--
T ss_pred             CCcEEEEECCCCc
Confidence            9999999999873

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=1.9e-29  Score=218.85  Aligned_cols=229  Identities=12%  Similarity=0.029  Sum_probs=187.0

Q ss_pred             Cccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC-----cccccceeeeeeeeeeeecC----C---ce-EEee
Q 021744           63 AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN-----SNINNRAVIKTDILCRNWVQ----G---NC-MYGE  126 (308)
Q Consensus        63 ~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~----~---~~-~~g~  126 (308)
                      .+.+|...  +++|+|  ++ ++|+.|++|++||+.+++.     .......|...+.++.|+++    +   .. ++++
T Consensus        11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~   88 (397)
T 1sq9_A           11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   88 (397)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc
Confidence            34578777  899998  67 9999999999999987761     22234456677999999999    7   55 8899


Q ss_pred             CCCeEEEEEcCCCcee-----eeEeeCc-----ccceEEEEEe----CCCCE-EEEeeCCCcEEEEeCCC------CeEE
Q 021744          127 KCKFLHSWTVGDGFKL-----LTQLEGH-----QKVVSGITLP----SGSDK-LYSGSKDETVRVWDCAS------GQCA  185 (308)
Q Consensus       127 ~d~~i~iwd~~~~~~~-----~~~~~~h-----~~~v~~~~~~----~~~~~-l~s~s~dg~v~~wd~~~------~~~~  185 (308)
                      .|+.|++|++.++ +.     +..+..|     ...|.+++|+    |++++ |++++.|+.|++||+++      ++.+
T Consensus        89 ~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  167 (397)
T 1sq9_A           89 FSGDLLFYRITRE-DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  167 (397)
T ss_dssp             TTSCEEEEEEEEC-TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             CCCCEEEEEccCC-cccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence            9999999999887 54     7788888     5999999999    99999 99999999999999998      6555


Q ss_pred             E-----EEe--------CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeC---C---CCCEEEEEEeCC--
Q 021744          186 G-----VIN--------LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSG---P---VGQVYAMAVGND--  240 (308)
Q Consensus       186 ~-----~~~--------~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~---~---~~~v~~~~~~~~--  240 (308)
                      .     .+.        +...+.++  .+++ ++++++ |+.|++||+++++.. .+..   |   ...|.+++|+|+  
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~  246 (397)
T 1sq9_A          168 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS  246 (397)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred             eccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCC
Confidence            5     553        45566665  4677 888777 899999999998877 6777   8   999999999998  


Q ss_pred             EEEEEcCC---CeEEEEEcCCCCcccccceeccc-------------cCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          241 LLFAGTQD---GAILAWKFNVTTNCFEPAASLKV-------------HTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       241 ~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~-------------~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      +|++++.|   +.|++||++++    +++..+..             |...+.+ +|+|++++|++++ +..|.++.
T Consensus       247 ~l~~~~~d~~~g~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  319 (397)
T 1sq9_A          247 LLAIAHDSNSFGCITLYETEFG----ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  319 (397)
T ss_dssp             EEEEEEEETTEEEEEEEETTTC----CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             EEEEEecCCCCceEEEEECCCC----cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            99999999   99999999987    67777887             9999999 9999999998666 55555554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=4.7e-29  Score=235.50  Aligned_cols=231  Identities=14%  Similarity=0.172  Sum_probs=195.5

Q ss_pred             Cccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCC
Q 021744           63 AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGD  138 (308)
Q Consensus        63 ~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~  138 (308)
                      .+.+|...  +++|+|++.. ++++.|++|+|||+.+++... ....|...+.++.|+|++.. ++++.|+.|++||+.+
T Consensus         8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~   86 (814)
T 3mkq_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR-SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT   86 (814)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred             eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE-EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            34677777  8999999999 999999999999998776543 33457777999999999976 8899999999999999


Q ss_pred             CceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC-eEEEEEe-CCCeeEEE--Ec-CCCEEEEEc-CCcE
Q 021744          139 GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG-QCAGVIN-LGGEVGCM--IS-EGPWIFIGV-TNFV  212 (308)
Q Consensus       139 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~-~~~~~~~-~~~~v~~~--~~-~~~~l~~~~-d~~i  212 (308)
                      + +.+..+.+|.+.|++++|+|++++|++++.||+|++||++++ .....+. +...+.++  .| ++..+++++ |+.|
T Consensus        87 ~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v  165 (814)
T 3mkq_A           87 G-EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV  165 (814)
T ss_dssp             C-CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred             C-cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence            9 788899999999999999999999999999999999999987 6666666 67777776  45 577888766 9999


Q ss_pred             EEEEcCCCcee-eeeC-CCCCEEEEEEeC--C--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCC
Q 021744          213 KAWNTQTNTDL-SLSG-PVGQVYAMAVGN--D--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVT  285 (308)
Q Consensus       213 ~~wd~~~~~~~-~~~~-~~~~v~~~~~~~--~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~  285 (308)
                      ++||+++++.. .+.. +...+.+++|+|  +  ++++++.||.|++||+.++    +.+..+..|...+.+ +|+|++.
T Consensus       166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~  241 (814)
T 3mkq_A          166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK----SCVATLEGHMSNVSFAVFHPTLP  241 (814)
T ss_dssp             EEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT----EEEEEEECCSSCEEEEEECSSSS
T ss_pred             EEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC----cEEEEEcCCCCCEEEEEEcCCCC
Confidence            99999887765 4444 448899999998  6  9999999999999999987    778888899999999 9999999


Q ss_pred             eEEEee-ceEEEEee
Q 021744          286 SLLGSV-SFIMFIGQ  299 (308)
Q Consensus       286 ~l~~s~-s~~i~~~~  299 (308)
                      ++++++ +..|.++.
T Consensus       242 ~l~~~~~dg~v~vwd  256 (814)
T 3mkq_A          242 IIISGSEDGTLKIWN  256 (814)
T ss_dssp             EEEEEETTSCEEEEE
T ss_pred             EEEEEeCCCeEEEEE
Confidence            888665 44454444

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=8.2e-29  Score=214.16  Aligned_cols=194  Identities=8%  Similarity=-0.035  Sum_probs=160.7

Q ss_pred             Cccccccc--eeEEecCC-Ce-eeccCCCcEEEEECCCCCCccccc-ceeeeeeeeeeeec-CCce-EEeeCCCeEEEEE
Q 021744           63 AATANGAA--AKRFANNT-WG-RNNNFNNHSNNYRAGNSKNSNINN-RAVIKTDILCRNWV-QGNC-MYGEKCKFLHSWT  135 (308)
Q Consensus        63 ~~~gh~~~--~i~~s~~g-~~-~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~-~~g~~d~~i~iwd  135 (308)
                      .+.+|...  +++|+|++ .+ ++|+.|++|++||+.+++...... ..|...+..+.|+| ++.. ++++.|+.|++||
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  147 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD  147 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence            34577777  89999999 77 999999999999998776543322 35777899999999 5444 8899999999999


Q ss_pred             cCCCceeeeEeeC---cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCC-EEEEEc
Q 021744          136 VGDGFKLLTQLEG---HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGP-WIFIGV  208 (308)
Q Consensus       136 ~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~-~l~~~~  208 (308)
                      +.+.  .+..+..   |...|.+++|+|++++|++++.|+.|++||++ ++.+..+. +...+.++  .++++ ++++++
T Consensus       148 ~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  224 (383)
T 3ei3_B          148 FSGS--VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSS  224 (383)
T ss_dssp             TTSC--EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEE
T ss_pred             CCCC--ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEe
Confidence            9864  3455544   44889999999999999999999999999994 66777776 77888876  46777 778766


Q ss_pred             -CCcEEEEEcCC----CceeeeeCCCCCEEEEEEeC-C--EEEEEcCCCeEEEEEcCCC
Q 021744          209 -TNFVKAWNTQT----NTDLSLSGPVGQVYAMAVGN-D--LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       209 -d~~i~~wd~~~----~~~~~~~~~~~~v~~~~~~~-~--~l~~g~~dg~i~iwd~~~~  259 (308)
                       |+.|++||+++    ++.....+|...|.+++|+| +  +|++++.|+.|++||+++.
T Consensus       225 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~  283 (383)
T 3ei3_B          225 VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW  283 (383)
T ss_dssp             TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT
T ss_pred             CCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC
Confidence             99999999998    55554457999999999999 7  9999999999999999986

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=3.5e-28  Score=210.59  Aligned_cols=252  Identities=10%  Similarity=0.061  Sum_probs=195.6

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe--eeccCCCcEEEEECCCCCCcccc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      .++++++.|++|++||..++.            ......+|... +++|+|+++.  ++++.|++|++||+.+++.... 
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~-   69 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNK------------VTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-   69 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTE------------EEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-
T ss_pred             EEEEEcCCCCEEEEEECCCCe------------EEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE-
Confidence            368899999999999988761            11122344444 8999999986  6788999999999988765422 


Q ss_pred             cceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEE-EEeeCCCcEEEEeCC
Q 021744          104 NRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKL-YSGSKDETVRVWDCA  180 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~v~~wd~~  180 (308)
                       ..+...+..+.|+|++..  +++..++.|++||+.++ +.+..+..| ..+.+++|+|+++.+ ++++.|+.|++||++
T Consensus        70 -~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~-~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  146 (391)
T 1l0q_A           70 -VPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN-TVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTV  146 (391)
T ss_dssp             -EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             -EECCCCccceEECCCCCEEEEEECCCCEEEEEECCCC-eEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence             222336888999999975  45567899999999998 677777754 578999999999977 788889999999999


Q ss_pred             CCeEEEEEeCCCeeEEE--EcCCCEEE-EEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEc---CCCeE
Q 021744          181 SGQCAGVINLGGEVGCM--ISEGPWIF-IGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT---QDGAI  251 (308)
Q Consensus       181 ~~~~~~~~~~~~~v~~~--~~~~~~l~-~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~---~dg~i  251 (308)
                      +++.+..+.....+..+  .+++++++ ++. ++.|++||+++++......+...+.+++|+|+  ++++++   .++.|
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v  226 (391)
T 1l0q_A          147 TKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTV  226 (391)
T ss_dssp             TTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEE
T ss_pred             CCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcE
Confidence            99999888855555544  57888775 555 88999999999988755556778999999998  677666   68999


Q ss_pred             EEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee--ceEEEEee
Q 021744          252 LAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV--SFIMFIGQ  299 (308)
Q Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~--s~~i~~~~  299 (308)
                      ++||+.++    +.+..+..+.. +.. +|+|++++|++++  +..+.++.
T Consensus       227 ~~~d~~~~----~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d  272 (391)
T 1l0q_A          227 SMIDTGTN----KITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVID  272 (391)
T ss_dssp             EEEETTTT----EEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEECCCC----eEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence            99999986    66677776654 555 9999999886543  55555554

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=2.4e-29  Score=215.39  Aligned_cols=234  Identities=13%  Similarity=0.098  Sum_probs=187.2

Q ss_pred             cccccc--eeEEecC---CC-e-eeccCCCcEEEEECCCCCCcccccc----eeeeeeeeeeeecC----Cce-EEeeCC
Q 021744           65 TANGAA--AKRFANN---TW-G-RNNNFNNHSNNYRAGNSKNSNINNR----AVIKTDILCRNWVQ----GNC-MYGEKC  128 (308)
Q Consensus        65 ~gh~~~--~i~~s~~---g~-~-~s~~~d~~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~----~~~-~~g~~d  128 (308)
                      .+|...  +++|+|+   +. . ++++.++.|++||+.+++.+.....    .+...+.++.|+++    +.. ++|+.|
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d   94 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR   94 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC
Confidence            367777  8999984   43 4 7777777999999987655422211    13345899999999    434 889999


Q ss_pred             CeEEEEEcCCCceeeeEeeCcccceEEEEEeC-CCCEEEEeeCCCcEEEEeCCCCeEEEEE----eCCCeeEEE--EcCC
Q 021744          129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVI----NLGGEVGCM--ISEG  201 (308)
Q Consensus       129 ~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~v~~wd~~~~~~~~~~----~~~~~v~~~--~~~~  201 (308)
                      +.|++||+.++ +.+..+.+|...|.+++|+| ++.+|++++.|+.|++||+++++.+..+    .+...+.++  .+++
T Consensus        95 g~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  173 (366)
T 3k26_A           95 GIIRIINPITM-QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG  173 (366)
T ss_dssp             CEEEEECTTTC-CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTS
T ss_pred             CEEEEEEchhc-eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCC
Confidence            99999999998 78889999999999999999 8999999999999999999999999988    277778776  3778


Q ss_pred             CEEEEEc-CCcEEEEEcCCCcee-ee----------------------------eCCCCCEEEEEEeCCEEEEEcCCCeE
Q 021744          202 PWIFIGV-TNFVKAWNTQTNTDL-SL----------------------------SGPVGQVYAMAVGNDLLFAGTQDGAI  251 (308)
Q Consensus       202 ~~l~~~~-d~~i~~wd~~~~~~~-~~----------------------------~~~~~~v~~~~~~~~~l~~g~~dg~i  251 (308)
                      ++|++++ |+.|++||+++++.. .+                            ..|...|.+++|+++++++++.|+.|
T Consensus       174 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i  253 (366)
T 3k26_A          174 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAI  253 (366)
T ss_dssp             SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEE
T ss_pred             CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEE
Confidence            8888776 999999999987543 22                            23889999999997799999999999


Q ss_pred             EEEEcCCCCcc----------cccceeccccCCCeEE-EEecC--CCeEEEee-ceEEEEee
Q 021744          252 LAWKFNVTTNC----------FEPAASLKVHTDSNRA-HFSRD--VTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       252 ~iwd~~~~~~~----------~~~~~~~~~~~~~v~~-~~s~d--~~~l~~s~-s~~i~~~~  299 (308)
                      ++||+.+....          ...+..+..|...+.+ +|+|+  +++|++++ +..|.++.
T Consensus       254 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd  315 (366)
T 3k26_A          254 VCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWD  315 (366)
T ss_dssp             EEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEE
T ss_pred             EEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEE
Confidence            99999875320          1235667788889999 99999  99998665 44454444

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.9e-30  Score=229.81  Aligned_cols=220  Identities=7%  Similarity=-0.049  Sum_probs=165.7

Q ss_pred             ecCCCe-eeccCCCcEEEEECCCCCCccc---ccceeeeeeeeeeeecC------C-ceEEeeCCCeEEEEEcCCCce--
Q 021744           75 ANNTWG-RNNNFNNHSNNYRAGNSKNSNI---NNRAVIKTDILCRNWVQ------G-NCMYGEKCKFLHSWTVGDGFK--  141 (308)
Q Consensus        75 s~~g~~-~s~~~d~~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~------~-~~~~g~~d~~i~iwd~~~~~~--  141 (308)
                      +|++.. ++++.|++|+|||+++++....   ....+...+..+.|+|+      + .+++++.|++|++||+.++..  
T Consensus       170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~  249 (524)
T 2j04_B          170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV  249 (524)
T ss_dssp             ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred             chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence            455556 7888999999999977653211   12334556899999986      2 348899999999999976521  


Q ss_pred             --------eeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCe-EEEEEe-CCCeeEEE--E--cCC-CEEEE
Q 021744          142 --------LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ-CAGVIN-LGGEVGCM--I--SEG-PWIFI  206 (308)
Q Consensus       142 --------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~-~~~~~~-~~~~v~~~--~--~~~-~~l~~  206 (308)
                              +...+.+|...|++++|+++ ..|++|+.||+|++||+++++ +...+. |...|.++  .  +++ .+|++
T Consensus       250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS  328 (524)
T 2j04_B          250 HVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVST  328 (524)
T ss_dssp             SEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEE
T ss_pred             ccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEE
Confidence                    23467889999999999986 489999999999999999764 444455 78888877  2  345 78887


Q ss_pred             Ec-CCcEEEEEcCCCcee-eeeCCCC--CEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-E
Q 021744          207 GV-TNFVKAWNTQTNTDL-SLSGPVG--QVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-H  279 (308)
Q Consensus       207 ~~-d~~i~~wd~~~~~~~-~~~~~~~--~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~  279 (308)
                      ++ |++|++||+++++.. .+.+|..  .|.+++|+|+  .+++++.|+.|++||++++    ..+..+.+|...|++ +
T Consensus       329 ~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~----~~~~~l~gH~~~V~sva  404 (524)
T 2j04_B          329 VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA----FAVHPLVSRETTITAIG  404 (524)
T ss_dssp             EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT----TCCEEEEECSSCEEEEE
T ss_pred             eccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc----ccceeeecCCCceEEEE
Confidence            76 999999999987765 5555543  5889999998  8999999999999999986    666778899999999 9


Q ss_pred             EecCCCeEEEee-ceEEEEee
Q 021744          280 FSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       280 ~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      |+|++++|++++ +..+.++.
T Consensus       405 ~Sp~g~~l~Sgs~Dgtv~lwd  425 (524)
T 2j04_B          405 VSRLHPMVLAGSADGSLIITN  425 (524)
T ss_dssp             CCSSCCBCEEEETTTEEECCB
T ss_pred             eCCCCCeEEEEECCCEEEEEe
Confidence            999999988655 66666654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=4.7e-29  Score=211.93  Aligned_cols=231  Identities=13%  Similarity=0.059  Sum_probs=185.3

Q ss_pred             ccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC--cccccceeeeeeeeeeeecCCc-e-EEeeCCCeEEEEEc-C
Q 021744           66 ANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN--SNINNRAVIKTDILCRNWVQGN-C-MYGEKCKFLHSWTV-G  137 (308)
Q Consensus        66 gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~-~~g~~d~~i~iwd~-~  137 (308)
                      +|...  +++|+|++.+ ++++.|++|++||+.+++.  .......|...+.++.|++++. . ++++.|+.|++||+ .
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~   88 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG   88 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence            56666  8999999999 9999999999999977651  1123346667799999999998 5 88999999999999 7


Q ss_pred             CCceeeeEeeC--cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC---------CeEEEEEeCCCeeEEEEcCCCEEEE
Q 021744          138 DGFKLLTQLEG--HQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS---------GQCAGVINLGGEVGCMISEGPWIFI  206 (308)
Q Consensus       138 ~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~---------~~~~~~~~~~~~v~~~~~~~~~l~~  206 (308)
                      ++.  ...+.+  |...|.+++|+| +.++++++.|+.|++||+++         ++++..+.+...+.++......+++
T Consensus        89 ~~~--~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~  165 (342)
T 1yfq_A           89 SPS--FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIV  165 (342)
T ss_dssp             SSS--EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEE
T ss_pred             CCc--eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEE
Confidence            773  467888  999999999999 99999999999999999987         7767667777888887533333665


Q ss_pred             Ec-CCcEEEEEcCC-Ccee---eeeCCCCCEEEEEEeC-C--EEEEEcCCCeEEEEEcCCC--CcccccceeccccCC--
Q 021744          207 GV-TNFVKAWNTQT-NTDL---SLSGPVGQVYAMAVGN-D--LLFAGTQDGAILAWKFNVT--TNCFEPAASLKVHTD--  274 (308)
Q Consensus       207 ~~-d~~i~~wd~~~-~~~~---~~~~~~~~v~~~~~~~-~--~l~~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~--  274 (308)
                      +. ++.|++||+++ +...   ....|...+.+++|+| +  ++++++.||.|++|+++..  ....+....+..|..  
T Consensus       166 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  245 (342)
T 1yfq_A          166 GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL  245 (342)
T ss_dssp             EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT
T ss_pred             EeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccc
Confidence            55 99999999998 5432   4557888999999999 7  9999999999999999875  111145566766654  


Q ss_pred             -------CeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          275 -------SNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       275 -------~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                             .+.+ +|+|++++|++++ +..|+++.
T Consensus       246 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd  279 (342)
T 1yfq_A          246 KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             cccccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence                   8999 9999999998665 54555544

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.1e-28  Score=208.51  Aligned_cols=221  Identities=8%  Similarity=0.064  Sum_probs=184.5

Q ss_pred             Cccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCC
Q 021744           63 AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGD  138 (308)
Q Consensus        63 ~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~  138 (308)
                      .+.+|...  +++|+|++++ ++++.|+.|++||+.+++... ....|...+..+.|++++.. ++++.|+.|++||+.+
T Consensus        27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~  105 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG-TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN  105 (369)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred             EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh-hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            45688887  8999999999 999999999999998776542 34557777999999999866 8899999999999999


Q ss_pred             CceeeeEeeCcccceEEEEEeCCCCEEEEeeCC-----CcEEEEeCCCCeEE-----------EEEe-CCC--eeEEE--
Q 021744          139 GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD-----ETVRVWDCASGQCA-----------GVIN-LGG--EVGCM--  197 (308)
Q Consensus       139 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-----g~v~~wd~~~~~~~-----------~~~~-~~~--~v~~~--  197 (308)
                      + +.+..+. |...|.+++|+|+++++++++.+     +.|++||++.....           ..+. +..  .+.++  
T Consensus       106 ~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (369)
T 3zwl_B          106 G-QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW  183 (369)
T ss_dssp             C-CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred             C-cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence            8 6777777 88999999999999999999999     99999998865322           2222 222  55554  


Q ss_pred             EcCCCEEEEEc-CCcEEEEEcCC-Ccee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecccc
Q 021744          198 ISEGPWIFIGV-TNFVKAWNTQT-NTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH  272 (308)
Q Consensus       198 ~~~~~~l~~~~-d~~i~~wd~~~-~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  272 (308)
                      .++++++++++ ++.|++||+++ .+.. .+..|...|.+++|+|+  +|++++.|+.|++||++++    +.+..+. +
T Consensus       184 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~-~  258 (369)
T 3zwl_B          184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL----QVLKKYE-T  258 (369)
T ss_dssp             CGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----CEEEEEE-C
T ss_pred             cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC----ceeeeec-C
Confidence            47888888776 99999999998 5555 78889999999999999  9999999999999999986    5566665 6


Q ss_pred             CCCeEE-EEecCCCeEEEee
Q 021744          273 TDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       273 ~~~v~~-~~s~d~~~l~~s~  291 (308)
                      ...+.. +|+|+++++++++
T Consensus       259 ~~~~~~~~~~~~~~~l~~~~  278 (369)
T 3zwl_B          259 DCPLNTAVITPLKEFIILGG  278 (369)
T ss_dssp             SSCEEEEEECSSSSEEEEEE
T ss_pred             CCCceeEEecCCCceEEEee
Confidence            677888 9999999998665

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=1e-28  Score=225.73  Aligned_cols=256  Identities=13%  Similarity=0.109  Sum_probs=192.8

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCcc---ccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAAT---ANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN   99 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~---gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~   99 (308)
                      +.++++++.|+.|++||..++           .+......   +|...  +++|+ ++.+ ++++.|++|++||+.+++.
T Consensus       219 ~~~l~~~~~dg~i~vwd~~~~-----------~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~  286 (615)
T 1pgu_A          219 GEFVITVGSDRKISCFDGKSG-----------EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC  286 (615)
T ss_dssp             CCEEEEEETTCCEEEEETTTC-----------CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE
T ss_pred             CCEEEEEeCCCeEEEEECCCC-----------CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE
Confidence            678999999999999998876           11111112   56555  89999 9988 9999999999999987765


Q ss_pred             cccccce---eeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCC---------------
Q 021744          100 SNINNRA---VIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG---------------  161 (308)
Q Consensus       100 ~~~~~~~---~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~---------------  161 (308)
                      .......   +...+..+.+......++++.|+.|++||+.++ +.+..+.+|...|.+++| |+               
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~  364 (615)
T 1pgu_A          287 VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHD-EVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSS  364 (615)
T ss_dssp             EEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEE-EEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTT
T ss_pred             EEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCC-cEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEc
Confidence            4322111   123355666653345589999999999999987 777888777777777766 54               


Q ss_pred             ------------------CCEEEEeeCCCcEEEEeCC----------------------------------CCeEEEEEe
Q 021744          162 ------------------SDKLYSGSKDETVRVWDCA----------------------------------SGQCAGVIN  189 (308)
Q Consensus       162 ------------------~~~l~s~s~dg~v~~wd~~----------------------------------~~~~~~~~~  189 (308)
                                        +..+++++.|+.|++||+.                                  +++.+..+.
T Consensus       365 ~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (615)
T 1pgu_A          365 SSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR  444 (615)
T ss_dssp             TEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             hhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc
Confidence                              5666777777777766654                                  344445555


Q ss_pred             CCCeeEEEEcCCCEEEEEc--CCcEEEEEcCCCce--eeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCccc
Q 021744          190 LGGEVGCMISEGPWIFIGV--TNFVKAWNTQTNTD--LSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCF  263 (308)
Q Consensus       190 ~~~~v~~~~~~~~~l~~~~--d~~i~~wd~~~~~~--~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~  263 (308)
                      +...+.++...+++++++.  ++.|++||+.+++.  ..+..|...|.+++|+|+  +|++++.||.|++||+.++    
T Consensus       445 ~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~----  520 (615)
T 1pgu_A          445 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR----  520 (615)
T ss_dssp             CSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----
T ss_pred             cCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC----
Confidence            5566666643377888665  78999999998877  467789999999999999  9999999999999999987    


Q ss_pred             ccceeccc-cCCCeEE-EEec----------CCCeEEEee-ceEEEEee
Q 021744          264 EPAASLKV-HTDSNRA-HFSR----------DVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       264 ~~~~~~~~-~~~~v~~-~~s~----------d~~~l~~s~-s~~i~~~~  299 (308)
                      +++..+.+ |...|++ +|+|          ++++|++++ +..|+++.
T Consensus       521 ~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~  569 (615)
T 1pgu_A          521 EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS  569 (615)
T ss_dssp             EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEE
T ss_pred             cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEE
Confidence            77777887 9999999 9999          999999666 44444444

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.4e-28  Score=213.68  Aligned_cols=233  Identities=8%  Similarity=-0.010  Sum_probs=180.2

Q ss_pred             ccccc--eeEEecCCCe--eeccCCCcEEEEECC--CCCCccccc-ceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcC
Q 021744           66 ANGAA--AKRFANNTWG--RNNNFNNHSNNYRAG--NSKNSNINN-RAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVG  137 (308)
Q Consensus        66 gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~  137 (308)
                      +|...  +++|+|++++  ++++.|++|++||+.  +++...... ..+...+..+.|+|++.. ++++.++.|++|++.
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~  179 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDIN  179 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecC
Confidence            34444  8999999998  789999999999998  665443222 134456889999999976 889999999999998


Q ss_pred             CCceee----eEeeCcccceEEEEEeCC---CCEEEEeeCCCcEEEEeCCCCeEEEEEe--CCCeeEEE-EcCCCEEEEE
Q 021744          138 DGFKLL----TQLEGHQKVVSGITLPSG---SDKLYSGSKDETVRVWDCASGQCAGVIN--LGGEVGCM-ISEGPWIFIG  207 (308)
Q Consensus       138 ~~~~~~----~~~~~h~~~v~~~~~~~~---~~~l~s~s~dg~v~~wd~~~~~~~~~~~--~~~~v~~~-~~~~~~l~~~  207 (308)
                      +. +..    ..+.+|...|.+++|+|+   +++|++++.|++|++||+++++.+..+.  |...+.++ +.++++|+++
T Consensus       180 ~~-~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~  258 (450)
T 2vdu_B          180 SI-PEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSA  258 (450)
T ss_dssp             SC-CCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEEEE
T ss_pred             Cc-ccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEEEEE
Confidence            77 333    377889999999999999   8999999999999999999998887754  67777766 2388899987


Q ss_pred             c-CCcEEEEEcCCCcee-eee-------------------------CCCCCEEEEEEeCC--EEEEEc-CCCeEEEEEc-
Q 021744          208 V-TNFVKAWNTQTNTDL-SLS-------------------------GPVGQVYAMAVGND--LLFAGT-QDGAILAWKF-  256 (308)
Q Consensus       208 ~-d~~i~~wd~~~~~~~-~~~-------------------------~~~~~v~~~~~~~~--~l~~g~-~dg~i~iwd~-  256 (308)
                      + |+.|++||+++++.+ .+.                         .....|.+++++|+  ++++++ .|+.|++|++ 
T Consensus       259 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~  338 (450)
T 2vdu_B          259 GGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMS  338 (450)
T ss_dssp             ESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEEC
T ss_pred             eCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEec
Confidence            6 999999999999866 443                         22357899999998  777777 8999999999 


Q ss_pred             -CCCCcccccceeccccCCCeEE-EEecCCCeEEEee---------ceEEEEeecC
Q 021744          257 -NVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV---------SFIMFIGQNN  301 (308)
Q Consensus       257 -~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~---------s~~i~~~~~~  301 (308)
                       ..+ ..++.+..+..| ..+.+ +|+|++.++++..         .+.+|.....
T Consensus       339 ~~~~-~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          339 EKQK-GDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             SSST-TCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred             cCCC-CceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence             332 113556667777 67777 9999653333322         1477776644

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=2.6e-28  Score=223.15  Aligned_cols=256  Identities=10%  Similarity=0.066  Sum_probs=199.7

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc---eeEEec--CCCe-eeccCCCcEEEEECCCC--
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA---AKRFAN--NTWG-RNNNFNNHSNNYRAGNS--   97 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~---~i~~s~--~g~~-~s~~~d~~i~vwd~~~~--   97 (308)
                      +.++|+++ ++.|++|+..++....        .....+.+|...   +++|+|  ++++ ++++.|++|++||+.++  
T Consensus        30 g~~l~~~~-~~~v~v~~~~~~~~~~--------~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~  100 (615)
T 1pgu_A           30 TNAIAYPC-GKSAFVRCLDDGDSKV--------PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKE  100 (615)
T ss_dssp             TTEEEEEE-TTEEEEEECCSSCCSS--------CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGG
T ss_pred             CCEEEEec-CCeEEEEECCCCCCcc--------ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcc
Confidence            56788877 8899999987541100        112223455543   799999  9999 99999999999999644  


Q ss_pred             ----C-CcccccceeeeeeeeeeeecCCce-EEeeCC----CeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCC-EEE
Q 021744           98 ----K-NSNINNRAVIKTDILCRNWVQGNC-MYGEKC----KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD-KLY  166 (308)
Q Consensus        98 ----~-~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d----~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~  166 (308)
                          + ........|...+..+.|+|++.. ++++.+    +.|++||  .+ +.+..+.+|...|.+++|+|+++ .++
T Consensus       101 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~  177 (615)
T 1pgu_A          101 SNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SG-NSLGEVSGHSQRINACHLKQSRPMRSM  177 (615)
T ss_dssp             GTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TC-CEEEECCSCSSCEEEEEECSSSSCEEE
T ss_pred             cccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CC-CcceeeecCCccEEEEEECCCCCcEEE
Confidence                1 112233445667999999999977 667766    6888888  44 56888999999999999999997 799


Q ss_pred             EeeCCCcEEEEeCCCCeEEEEEe-CCC---eeEEE--EcC-CCEEEEEc-CCcEEEEEcCCCcee-ee-e---CCCCCEE
Q 021744          167 SGSKDETVRVWDCASGQCAGVIN-LGG---EVGCM--ISE-GPWIFIGV-TNFVKAWNTQTNTDL-SL-S---GPVGQVY  233 (308)
Q Consensus       167 s~s~dg~v~~wd~~~~~~~~~~~-~~~---~v~~~--~~~-~~~l~~~~-d~~i~~wd~~~~~~~-~~-~---~~~~~v~  233 (308)
                      +++.|+.|++||+++++.+..+. +..   .+.++  .++ +++|++++ |+.|++||+++++.. .+ .   .|...|.
T Consensus       178 ~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~  257 (615)
T 1pgu_A          178 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF  257 (615)
T ss_dssp             EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEE
T ss_pred             EEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceE
Confidence            99999999999999999999888 666   67766  477 88888776 999999999999887 55 4   8999999


Q ss_pred             EEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecccc----CCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          234 AMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH----TDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       234 ~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      +++|+ +  +|++++.|+.|++||++++    +.+..+..+    ...+.. .|+ ++.++++++ +..|.++.
T Consensus       258 ~~~~~-~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d  325 (615)
T 1pgu_A          258 ALSWL-DSQKFATVGADATIRVWDVTTS----KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYE  325 (615)
T ss_dssp             EEEES-SSSEEEEEETTSEEEEEETTTT----EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEE
T ss_pred             EEEEc-CCCEEEEEcCCCcEEEEECCCC----cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEE
Confidence            99998 6  9999999999999999986    666666655    355666 665 777777554 55555544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.5e-28  Score=210.46  Aligned_cols=234  Identities=13%  Similarity=0.096  Sum_probs=184.2

Q ss_pred             Cccccccc--eeEEecC---CCe-eeccCCCcEEEEECCC-CCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEE
Q 021744           63 AATANGAA--AKRFANN---TWG-RNNNFNNHSNNYRAGN-SKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSW  134 (308)
Q Consensus        63 ~~~gh~~~--~i~~s~~---g~~-~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iw  134 (308)
                      .+.+|...  +++|+|+   |.+ ++|+.|++|++||+.+ ++........|...+..+.|+|++.. ++++.|+.|++|
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  113 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW  113 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEE
Confidence            34677777  8999999   578 9999999999999987 44443456677888999999999976 889999999999


Q ss_pred             EcCCCceeeeEeeCcccceEEEEE--eCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEE-EcCCc
Q 021744          135 TVGDGFKLLTQLEGHQKVVSGITL--PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFI-GVTNF  211 (308)
Q Consensus       135 d~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~d~~  211 (308)
                      |+.++ +.+. +.+|...|.+++|  +|++.+|++++.|+.|++||+++++.+..+.....+.++......+++ +.++.
T Consensus       114 d~~~~-~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (368)
T 3mmy_A          114 DLSSN-QAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERG  191 (368)
T ss_dssp             ETTTT-EEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGC
T ss_pred             EcCCC-Ccee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCc
Confidence            99988 5554 5679999999999  889999999999999999999999999999977777777555555555 45999


Q ss_pred             EEEEEcCCCcee-e--eeCCCCCEEEEEEeCC------EEEEEcCCCeEEEEEcCCCCcccccceeccccCC--------
Q 021744          212 VKAWNTQTNTDL-S--LSGPVGQVYAMAVGND------LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTD--------  274 (308)
Q Consensus       212 i~~wd~~~~~~~-~--~~~~~~~v~~~~~~~~------~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--------  274 (308)
                      +.+||++..... .  ...+...+.++.+.++      .+++++.||.|++||++.... ...+..+..|..        
T Consensus       192 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  270 (368)
T 3mmy_A          192 LIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP-AKDNFTFKCHRSNGTNTSAP  270 (368)
T ss_dssp             EEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH-HHHSEEEECSEEC----CCC
T ss_pred             EEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc-cccceeeeeeeccccccccc
Confidence            999999887544 1  2223445566665543      499999999999999987631 134556666665        


Q ss_pred             ----CeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          275 ----SNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       275 ----~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                          .+.+ +|+|++++|++++ +..|.++.
T Consensus       271 ~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd  301 (368)
T 3mmy_A          271 QDIYAVNGIAFHPVHGTLATVGSDGRFSFWD  301 (368)
T ss_dssp             EEECCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             ccccceEEEEEecCCCEEEEEccCCeEEEEE
Confidence                6888 9999999998665 55555544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.6e-28  Score=203.05  Aligned_cols=226  Identities=14%  Similarity=0.094  Sum_probs=184.5

Q ss_pred             CCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcC
Q 021744           62 PAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVG  137 (308)
Q Consensus        62 ~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~  137 (308)
                      ..+.+|...  +++| |++.+ ++++.|++|++||+.+++.. .....|...+..+.|+|++.. ++++.|+.|++|++.
T Consensus        12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~   89 (313)
T 3odt_A           12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLG-TVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLF   89 (313)
T ss_dssp             EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEE-EEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEE-EEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEee
Confidence            345688877  8899 99999 99999999999999766433 234456677999999999976 889999999999987


Q ss_pred             CCc--eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--Ec-CCCEEEEEc-CC
Q 021744          138 DGF--KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--IS-EGPWIFIGV-TN  210 (308)
Q Consensus       138 ~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~-~~~~l~~~~-d~  210 (308)
                      ...  +.+..+.+|...|.+++|  +++++++++.|+.|++||  .++.+..+. +...+.++  .+ +++++++++ |+
T Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  165 (313)
T 3odt_A           90 ATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADK  165 (313)
T ss_dssp             CCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTS
T ss_pred             ecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCC
Confidence            542  557788899999999999  467999999999999999  667777776 66777655  34 788888766 99


Q ss_pred             cEEEEEcCCCcee-eeeC-CCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCe
Q 021744          211 FVKAWNTQTNTDL-SLSG-PVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTS  286 (308)
Q Consensus       211 ~i~~wd~~~~~~~-~~~~-~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~  286 (308)
                      .|++||.  .+.. .+.. |...+.+++|+|+ .+++++.||.|++||++++    +++..+..|...+.+ +|+|++.+
T Consensus       166 ~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~l  239 (313)
T 3odt_A          166 TIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG----DVLRTYEGHESFVYCIKLLPNGDI  239 (313)
T ss_dssp             CEEEEET--TEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECTTSCE
T ss_pred             CEEEEec--CceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch----hhhhhhhcCCceEEEEEEecCCCE
Confidence            9999993  3333 4554 8899999999999 9999999999999999987    778888899999999 99999965


Q ss_pred             EEEeeceEEEEee
Q 021744          287 LLGSVSFIMFIGQ  299 (308)
Q Consensus       287 l~~s~s~~i~~~~  299 (308)
                      ++++.+..|.++.
T Consensus       240 ~~~~~dg~v~iwd  252 (313)
T 3odt_A          240 VSCGEDRTVRIWS  252 (313)
T ss_dssp             EEEETTSEEEEEC
T ss_pred             EEEecCCEEEEEE
Confidence            5455566666665

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.3e-29  Score=214.79  Aligned_cols=223  Identities=10%  Similarity=0.078  Sum_probs=176.8

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecC--CCe-eeccCCCcEEEEECCCCCC-
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANN--TWG-RNNNFNNHSNNYRAGNSKN-   99 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~--g~~-~s~~~d~~i~vwd~~~~~~-   99 (308)
                      +.+||+++.|++|++|+.....          ......+.+|...  +++|+|+  +.+ ++++.|++|++||+.+++. 
T Consensus        23 ~~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~   92 (379)
T 3jrp_A           23 GKRLATCSSDKTIKIFEVEGET----------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS   92 (379)
T ss_dssp             SSEEEEEETTSCEEEEEEETTE----------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCEEEEEECCCcEEEEecCCCc----------ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCcee
Confidence            5689999999999999987330          0112234567666  8999877  888 9999999999999987752 


Q ss_pred             cccccceeeeeeeeeeeecC--Cce-EEeeCCCeEEEEEcCCCc-eeeeEeeCcccceEEEEEeC-------------CC
Q 021744          100 SNINNRAVIKTDILCRNWVQ--GNC-MYGEKCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPS-------------GS  162 (308)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~--~~~-~~g~~d~~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~~~-------------~~  162 (308)
                      .......|...+..+.|+|+  +.. ++++.|+.|++||+.+.. .....+.+|...|.+++|+|             ++
T Consensus        93 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  172 (379)
T 3jrp_A           93 QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES  172 (379)
T ss_dssp             EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTT
T ss_pred             EeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCC
Confidence            11233446677999999998  655 899999999999998762 23456778999999999999             68


Q ss_pred             CEEEEeeCCCcEEEEeCCCCe----EEEEEe-CCCeeEEE--EcC---CCEEEEEc-CCcEEEEEcCCCc----ee--ee
Q 021744          163 DKLYSGSKDETVRVWDCASGQ----CAGVIN-LGGEVGCM--ISE---GPWIFIGV-TNFVKAWNTQTNT----DL--SL  225 (308)
Q Consensus       163 ~~l~s~s~dg~v~~wd~~~~~----~~~~~~-~~~~v~~~--~~~---~~~l~~~~-d~~i~~wd~~~~~----~~--~~  225 (308)
                      .++++++.|+.|++||+++++    .+..+. |...+.++  .++   +++|++++ |+.|++||+++++    ..  ..
T Consensus       173 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  252 (379)
T 3jrp_A          173 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE  252 (379)
T ss_dssp             CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSS
T ss_pred             CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeecc
Confidence            999999999999999998764    333444 67777776  466   77888776 9999999999874    12  33


Q ss_pred             eCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCC
Q 021744          226 SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       226 ~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~  258 (308)
                      ..|...|++++|+|+  +|++++.||.|++|++..
T Consensus       253 ~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          253 EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             SCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             ccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            458889999999999  899999999999999873

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2e-28  Score=215.99  Aligned_cols=238  Identities=9%  Similarity=0.037  Sum_probs=182.2

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCeeeccCCCcEEEEECCCCCCccc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      .|.++||+|.|++|+  |....               ..+.+|...  +++|+|+|      .++++.+|+.+..+.   
T Consensus        26 DG~~iASas~D~TV~--d~~~~---------------~~l~gh~~~v~~V~FsPdg------~~~~~~~~~~~~~~~---   79 (588)
T 2j04_A           26 DGTLYLTTFPDISIG--QPKYA---------------KDINCNSKNLFHVKEFPLE------FENKLDFELAQQNGL---   79 (588)
T ss_dssp             TSCEEEECSSSEEEE--EECCC---------------SCCSSBGGGTEEEEEECCC------CCCTTTTSCCCSSCS---
T ss_pred             CCCEEEEEcCCceee--ccccc---------------ceecCCCccEEEEEECCCC------CcceEEEEeCCCceE---
Confidence            378999999999999  63332               223578888  99999999      566666665432222   


Q ss_pred             ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCccc-----ceEEEEEeCCCCEEEEeeCCCcEEE
Q 021744          103 NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQK-----VVSGITLPSGSDKLYSGSKDETVRV  176 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~s~dg~v~~  176 (308)
                      ....+...+..|+|+|+|.. ++++.||.|++||.+.   .+..+. |..     .|.+++|+|++++|++|+.||+|++
T Consensus        80 ~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI  155 (588)
T 2j04_A           80 LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF  155 (588)
T ss_dssp             STTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence            22234667999999999975 9999999999999543   566666 665     5999999999999999999999999


Q ss_pred             EeCCCCe-------EEEEEe-----CCCeeEEE--EcCCCEEEEEcCCcEEEEEcCCCcee----ee-eCCCCCEEEEEE
Q 021744          177 WDCASGQ-------CAGVIN-----LGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDL----SL-SGPVGQVYAMAV  237 (308)
Q Consensus       177 wd~~~~~-------~~~~~~-----~~~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~~~~----~~-~~~~~~v~~~~~  237 (308)
                      ||+.++.       .+.++.     |...+.++  +|++ +++++.|++|++||+.+++..    ++ .+|...|.+++|
T Consensus       156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF  234 (588)
T 2j04_A          156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI  234 (588)
T ss_dssp             EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred             EECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence            9999875       356664     34567766  5777 555566999999999887743    45 478889999999


Q ss_pred             eCCEEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EE--ecCCCeEEEee-ceE-EEEe
Q 021744          238 GNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HF--SRDVTSLLGSV-SFI-MFIG  298 (308)
Q Consensus       238 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~--s~d~~~l~~s~-s~~-i~~~  298 (308)
                      +...+|+++ ++.|++||+.++    +......+|...+.. +|  +||++.|+++. +.. +|..
T Consensus       235 sg~~LASa~-~~tIkLWd~~~~----~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~~  295 (588)
T 2j04_A          235 VDYKVVLTC-PGYVHKIDLKNY----SISSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLLE  295 (588)
T ss_dssp             ETTEEEEEC-SSEEEEEETTTT----EEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEES
T ss_pred             ECCEEEEEe-CCeEEEEECCCC----eEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEee
Confidence            933888887 699999999985    332323379999999 99  99998888766 555 5554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=2.4e-28  Score=214.74  Aligned_cols=238  Identities=13%  Similarity=0.150  Sum_probs=185.8

Q ss_pred             cccccc--eeEEecC-CCe-eeccCCCcEEEEECCCC---------CCcccccceeeeeeeeeeeecCCc-e-EEeeCCC
Q 021744           65 TANGAA--AKRFANN-TWG-RNNNFNNHSNNYRAGNS---------KNSNINNRAVIKTDILCRNWVQGN-C-MYGEKCK  129 (308)
Q Consensus        65 ~gh~~~--~i~~s~~-g~~-~s~~~d~~i~vwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~-~~g~~d~  129 (308)
                      .+|...  +++|+|+ +.+ ++++.|++|++||+.+.         .........|...+..+.|++++. . ++|+.||
T Consensus       125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  204 (430)
T 2xyi_A          125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH  204 (430)
T ss_dssp             EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred             EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence            366666  8999998 556 99999999999999652         111123356667789999999886 4 8899999


Q ss_pred             eEEEEEcCCCc------eeeeEeeCcccceEEEEEeC-CCCEEEEeeCCCcEEEEeCCCC---eEEEEEe-CCCeeEEE-
Q 021744          130 FLHSWTVGDGF------KLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASG---QCAGVIN-LGGEVGCM-  197 (308)
Q Consensus       130 ~i~iwd~~~~~------~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~v~~wd~~~~---~~~~~~~-~~~~v~~~-  197 (308)
                      .|++|++.+..      .....+.+|...|.+++|+| ++.+|++++.|+.|++||++++   +.+..+. +...+.++ 
T Consensus       205 ~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~  284 (430)
T 2xyi_A          205 TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS  284 (430)
T ss_dssp             CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEE
T ss_pred             eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEE
Confidence            99999998731      11456778999999999999 6788999999999999999987   4666665 77778777 


Q ss_pred             -EcCCC-EEEEEc-CCcEEEEEcCCC-cee-eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcc-------
Q 021744          198 -ISEGP-WIFIGV-TNFVKAWNTQTN-TDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC-------  262 (308)
Q Consensus       198 -~~~~~-~l~~~~-d~~i~~wd~~~~-~~~-~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~-------  262 (308)
                       .++++ ++++|+ |+.|++||+++. +.+ .+..|...|.+++|+|+   +|++++.|+.|++||+......       
T Consensus       285 ~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  364 (430)
T 2xyi_A          285 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE  364 (430)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHH
T ss_pred             eCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccc
Confidence             35565 576666 999999999984 333 78889999999999997   7999999999999999873210       


Q ss_pred             ---cccceeccccCCCeEE-EEecCCC-eEEEee-ceEEEEeecCc
Q 021744          263 ---FEPAASLKVHTDSNRA-HFSRDVT-SLLGSV-SFIMFIGQNNK  302 (308)
Q Consensus       263 ---~~~~~~~~~~~~~v~~-~~s~d~~-~l~~s~-s~~i~~~~~~~  302 (308)
                         .+++..+.+|...|+. +|+|++. +|++++ +..|.++.-..
T Consensus       365 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          365 DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             HCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             cCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence               1455667789999999 9999999 455444 66666665443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=4e-28  Score=204.03  Aligned_cols=223  Identities=15%  Similarity=0.245  Sum_probs=182.8

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCcccc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      .+.++|+|+.|++|++|+..++           . ......+|.....++++++.. ++++.++.+++|+..........
T Consensus        78 ~~~~l~sgs~Dg~v~iw~~~~~-----------~-~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~  145 (318)
T 4ggc_A           78 EGNYLAVGTSSAEVQLWDVQQQ-----------K-RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVAT  145 (318)
T ss_dssp             TSSEEEEEETTSEEEEEETTTT-----------E-EEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             CCCEEEEEECCCcEEEeecCCc-----------e-eEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEE
Confidence            4679999999999999998877           1 122345666666678888888 99999999999999877655555


Q ss_pred             cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCc---eeeeEeeCcccceEEEEEeCCCCEE---EEeeCCCcEEE
Q 021744          104 NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGF---KLLTQLEGHQKVVSGITLPSGSDKL---YSGSKDETVRV  176 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l---~s~s~dg~v~~  176 (308)
                      ...|...+..+.+.+++.. ++++.|+.|++||+.+++   ........|...|.+++++|++..+   ++++.+++|++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l  225 (318)
T 4ggc_A          146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI  225 (318)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEE
T ss_pred             EcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEE
Confidence            6677777888999999876 889999999999998763   2345566788999999999876543   47788999999


Q ss_pred             EeCCCCeEEEEEeCCCeeEEE--EcCCCEEEEE--c-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCC
Q 021744          177 WDCASGQCAGVINLGGEVGCM--ISEGPWIFIG--V-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQD  248 (308)
Q Consensus       177 wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~--~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~d  248 (308)
                      ||.+..+......+...+...  .++++.++++  . |+.|++||+++++++ .+.+|.+.|++++|+|+  +|++|+.|
T Consensus       226 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D  305 (318)
T 4ggc_A          226 WNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD  305 (318)
T ss_dssp             EETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             EecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence            999999888888766666544  5777776643  3 899999999999888 88999999999999999  99999999


Q ss_pred             CeEEEEEcCCC
Q 021744          249 GAILAWKFNVT  259 (308)
Q Consensus       249 g~i~iwd~~~~  259 (308)
                      |+|+|||+...
T Consensus       306 ~~v~iWd~~~~  316 (318)
T 4ggc_A          306 ETLRLWRCFEL  316 (318)
T ss_dssp             TEEEEECCSCC
T ss_pred             CeEEEEECCCC
Confidence            99999999764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=1.2e-27  Score=208.22  Aligned_cols=229  Identities=14%  Similarity=0.128  Sum_probs=183.6

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEECCCCCC---cccccceeeeeeeeeeeec-CCce-EEeeCCCeEEEEEcCCCc---
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKN---SNINNRAVIKTDILCRNWV-QGNC-MYGEKCKFLHSWTVGDGF---  140 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~-~~g~~d~~i~iwd~~~~~---  140 (308)
                      .++++|+...  ++++.||.|+||++.....   .......|...+..+.|+| ++.. ++++.|+.|++||+.++.   
T Consensus        39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~  118 (402)
T 2aq5_A           39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL  118 (402)
T ss_dssp             SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS
T ss_pred             cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc
Confidence            5788888766  5789999999999965322   1123456888899999999 7765 899999999999998763   


Q ss_pred             ---eeeeEeeCcccceEEEEEeCCC-CEEEEeeCCCcEEEEeCCCCeEEEEE--e-CCCeeEEE--EcCCCEEEEEc-CC
Q 021744          141 ---KLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVI--N-LGGEVGCM--ISEGPWIFIGV-TN  210 (308)
Q Consensus       141 ---~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v~~wd~~~~~~~~~~--~-~~~~v~~~--~~~~~~l~~~~-d~  210 (308)
                         +.+..+.+|...|.+++|+|++ .+|++++.|++|++||+++++.+..+  . +...+.++  .+++++|++++ |+
T Consensus       119 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  198 (402)
T 2aq5_A          119 PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK  198 (402)
T ss_dssp             CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTS
T ss_pred             ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCC
Confidence               3577889999999999999998 69999999999999999999999998  4 67778776  46888888776 99


Q ss_pred             cEEEEEcCCCcee-ee-eCCCCC-EEEEEEeCC--EEEEE---cCCCeEEEEEcCCCCcccccceecc-ccCCCeEE-EE
Q 021744          211 FVKAWNTQTNTDL-SL-SGPVGQ-VYAMAVGND--LLFAG---TQDGAILAWKFNVTTNCFEPAASLK-VHTDSNRA-HF  280 (308)
Q Consensus       211 ~i~~wd~~~~~~~-~~-~~~~~~-v~~~~~~~~--~l~~g---~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~-~~  280 (308)
                      .|++||+++++.. .+ ..|... +.++.|+|+  +|++|   +.|+.|++||+++..   .++.... .|...+.. +|
T Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~  275 (402)
T 2aq5_A          199 RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE---EPLSLQELDTSSGVLLPFF  275 (402)
T ss_dssp             EEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS---SCSEEEECCCCSSCEEEEE
T ss_pred             cEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc---CCceEEeccCCCceeEEEE
Confidence            9999999999887 55 677765 899999999  77888   799999999999863   2233332 46677888 99


Q ss_pred             ecCCCeEEEee--c--eEEEEeecCc
Q 021744          281 SRDVTSLLGSV--S--FIMFIGQNNK  302 (308)
Q Consensus       281 s~d~~~l~~s~--s--~~i~~~~~~~  302 (308)
                      +|++++|++++  +  +.+|-..+.+
T Consensus       276 s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          276 DPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             ETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             cCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            99999997544  3  5555555444

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7e-29  Score=218.27  Aligned_cols=229  Identities=11%  Similarity=0.076  Sum_probs=177.4

Q ss_pred             cccccc--eeEEec-CCCe-eeccCCCcEEEEECCC---CCCcc-cccceeeeeeeeeeeecCCce-EEeeCCCeEEEEE
Q 021744           65 TANGAA--AKRFAN-NTWG-RNNNFNNHSNNYRAGN---SKNSN-INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWT  135 (308)
Q Consensus        65 ~gh~~~--~i~~s~-~g~~-~s~~~d~~i~vwd~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd  135 (308)
                      .+|...  +++|+| ++.+ ++|+.|++|+|||+.+   +.... .....|...+.++.|++++.. ++++.|+.|++||
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd  139 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLK  139 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence            577777  899999 9999 9999999999999965   43222 122356777999999998866 8999999999999


Q ss_pred             cC---CCceeeeEeeC------------cccceEEEE--EeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe---CCCeeE
Q 021744          136 VG---DGFKLLTQLEG------------HQKVVSGIT--LPSGSDKLYSGSKDETVRVWDCASGQCAGVIN---LGGEVG  195 (308)
Q Consensus       136 ~~---~~~~~~~~~~~------------h~~~v~~~~--~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~---~~~~v~  195 (308)
                      +.   ++ +....+.+            +...+.++.  +++++.+|++++.|+.|++||+++++++..+.   +...+.
T Consensus       140 ~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~  218 (437)
T 3gre_A          140 VNHYQQE-SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVS  218 (437)
T ss_dssp             EEEEEET-TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEE
T ss_pred             eccccCC-ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceE
Confidence            95   44 33333332            345566666  55789999999999999999999999999887   457777


Q ss_pred             EE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eee-CCCCCEEEEEEeC----C--EEEEEcCCCeEEEEEcCCCCcccc
Q 021744          196 CM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLS-GPVGQVYAMAVGN----D--LLFAGTQDGAILAWKFNVTTNCFE  264 (308)
Q Consensus       196 ~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~-~~~~~v~~~~~~~----~--~l~~g~~dg~i~iwd~~~~~~~~~  264 (308)
                      ++  .+++++|++++ |+.|++||+++++.+ .+. .|...|.+++++|    +  +|++|+.||.|++||++++    +
T Consensus       219 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~----~  294 (437)
T 3gre_A          219 SICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG----H  294 (437)
T ss_dssp             EEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT----E
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC----c
Confidence            76  47889999876 999999999998887 444 7778999997665    4  8999999999999999976    4


Q ss_pred             cceeccc--------------------------cCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          265 PAASLKV--------------------------HTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       265 ~~~~~~~--------------------------~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      .+..+..                          |...|.+ +|+ ++.+|++++ +..|.++.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd  356 (437)
T 3gre_A          295 CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFS  356 (437)
T ss_dssp             EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEE
T ss_pred             EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEE
Confidence            3333332                          5566777 888 667777555 66666655

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=9.8e-28  Score=211.10  Aligned_cols=217  Identities=17%  Similarity=0.235  Sum_probs=183.1

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC-ceEEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEG  148 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~iwd~~~~~~~~~~~~~  148 (308)
                      ..++++++++ ++|+.|++|++||+.+++... ....|...+.++.+  ++ .+++|+.||.|++||+.++ +.+..+.+
T Consensus       136 v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~  211 (435)
T 1p22_A          136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKR-ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG-EMLNTLIH  211 (435)
T ss_dssp             EEEEECCSSEEEEEESSSCEEEEESSSCCEEE-EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC-CEEEEECC
T ss_pred             EEEEEECCCEEEEEeCCCeEEEEeCCCCeEEE-EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC-cEEEEEcC
Confidence            4577789999 999999999999998776543 34467777888877  44 4499999999999999999 78899999


Q ss_pred             cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEE---EEEe-CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee
Q 021744          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA---GVIN-LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL  223 (308)
Q Consensus       149 h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~---~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~  223 (308)
                      |...|.+++|++  .++++++.|++|++||+++++.+   ..+. +...+.++..+++++++++ |+.|++||+++++..
T Consensus       212 h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  289 (435)
T 1p22_A          212 HCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFV  289 (435)
T ss_dssp             CCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEE
Confidence            999999999974  59999999999999999987655   3333 7778888877889998776 999999999999887


Q ss_pred             -eeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          224 -SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       224 -~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                       .+.+|...|.++.+++.++++|+.||.|++||++++    +++..+.+|...+.+ +|  ++.+|++++ +..|.++.
T Consensus       290 ~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd  362 (435)
T 1p22_A          290 RTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG----ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWD  362 (435)
T ss_dssp             EEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEE
T ss_pred             EEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCC----CEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEE
Confidence             788999999999998779999999999999999987    778889999999998 88  677787655 44444443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.1e-28  Score=208.75  Aligned_cols=215  Identities=7%  Similarity=0.048  Sum_probs=164.2

Q ss_pred             EEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcC---------CCcee
Q 021744           73 RFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVG---------DGFKL  142 (308)
Q Consensus        73 ~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~---------~~~~~  142 (308)
                      .+.+++.. ++|+.|++|++||+.+++.+....   ...+..+.+.|.  +++++.|+.|++|+..         +. +.
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~-~~  116 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTN-KV  116 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTC-CE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCc-ce
Confidence            44567777 999999999999998876553222   345777777777  8999999999999765         33 33


Q ss_pred             eeEee-CcccceEEEEEeC--CCCEEEEeeCCCcEEEEeCCCCeEEEEEe--CCCeeEEE--EcCCCEEEEEc-CCcEEE
Q 021744          143 LTQLE-GHQKVVSGITLPS--GSDKLYSGSKDETVRVWDCASGQCAGVIN--LGGEVGCM--ISEGPWIFIGV-TNFVKA  214 (308)
Q Consensus       143 ~~~~~-~h~~~v~~~~~~~--~~~~l~s~s~dg~v~~wd~~~~~~~~~~~--~~~~v~~~--~~~~~~l~~~~-d~~i~~  214 (308)
                      +..+. +|.+.|.+++|+|  +++++++++.|++|++||+++++.+....  +...+.++  .+++.+|++|+ |+.|++
T Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i  196 (343)
T 3lrv_A          117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV  196 (343)
T ss_dssp             EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred             eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence            43443 6778999999999  99999999999999999999999877664  34456555  58899999877 999999


Q ss_pred             EEcCCCcee--eeeC-CCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecc---ccCCCeE--E-EEecC
Q 021744          215 WNTQTNTDL--SLSG-PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK---VHTDSNR--A-HFSRD  283 (308)
Q Consensus       215 wd~~~~~~~--~~~~-~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~v~--~-~~s~d  283 (308)
                      ||+++++..  .+.. |..+|++++|+|+  +|++++ |+.|++||+++.    +.+..+.   .|...+.  + +|+|+
T Consensus       197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (343)
T 3lrv_A          197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD----VGTLAYPTYTIPEFKTGTVTYDIDDS  271 (343)
T ss_dssp             EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSS----TTCBSSCCCBC-----CCEEEEECTT
T ss_pred             EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCC----CcceeecccccccccccceEEEECCC
Confidence            999998866  6777 9999999999999  888888 459999999986    3333333   2434433  5 99999


Q ss_pred             CCeEEEee----ceEEEEe
Q 021744          284 VTSLLGSV----SFIMFIG  298 (308)
Q Consensus       284 ~~~l~~s~----s~~i~~~  298 (308)
                      +++|++++    .+.+|..
T Consensus       272 g~~l~~~s~~d~~i~v~~~  290 (343)
T 3lrv_A          272 GKNMIAYSNESNSLTIYKF  290 (343)
T ss_dssp             SSEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEecCCCCcEEEEEE
Confidence            99999633    4555544

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=3.3e-28  Score=202.32  Aligned_cols=250  Identities=14%  Similarity=0.128  Sum_probs=163.9

Q ss_pred             CCCceeEEEeecCCCCC------------CCCCCceEEecCCCeEEEeecCCCCCCCCCc--------ccccCCCCCC--
Q 021744            6 HGGNKRVFHRLGGGGGD------------GGGGGLSTADTRQKVCNYWRAGKCNRFPCPY--------LHRELPLPPA--   63 (308)
Q Consensus         6 ~~~~~~~~~~~~~~~~~------------~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~--------~~~~~~~~~~--   63 (308)
                      +.||.+.-+.+=++.+.            .+....-+....+.+|++|+......+.+.+        ...-.+.+..  
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  100 (356)
T 2w18_A           21 NPGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYN  100 (356)
T ss_dssp             ---CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCS
T ss_pred             CcceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccc
Confidence            56777777777666321            1112223334457899999988762221111        1111122200  


Q ss_pred             ----ccccccc----eeEEecC----CCe-eecc--------------------CCCcEEEEECCC-CCCcccccceeee
Q 021744           64 ----ATANGAA----AKRFANN----TWG-RNNN--------------------FNNHSNNYRAGN-SKNSNINNRAVIK  109 (308)
Q Consensus        64 ----~~gh~~~----~i~~s~~----g~~-~s~~--------------------~d~~i~vwd~~~-~~~~~~~~~~~~~  109 (308)
                          ..|+-..    .++++|+    +.. ++++                    .|++|++|++.. ++. ......|..
T Consensus       101 ~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~-~~s~~~~~~  179 (356)
T 2w18_A          101 LVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGG-KENQFLMPP  179 (356)
T ss_dssp             CEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCE-EEEEEECCC
T ss_pred             eeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCce-eeeeccCCC
Confidence                0122111    6888888    666 6544                    388888888844 432 234456666


Q ss_pred             eeeeeeeec---CCce-EEeeCCCeEEEEEcCCCceeeeEeeCcc---cceEEEEEeCCCCEE------------EEeeC
Q 021744          110 TDILCRNWV---QGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQ---KVVSGITLPSGSDKL------------YSGSK  170 (308)
Q Consensus       110 ~~~~~~~~~---~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l------------~s~s~  170 (308)
                      .+..+.|++   ++.+ ++++.|++|+|||++++ +.++++.+|.   ..+.+++|+|++.++            ++|+.
T Consensus       180 ~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~  258 (356)
T 2w18_A          180 EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP  258 (356)
T ss_dssp             SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred             ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence            677888888   4455 88999999999999999 8889998754   467788999999876            67889


Q ss_pred             CCcEEEEeCCCCeEEEEEe------CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEE-EEEEeCC-
Q 021744          171 DETVRVWDCASGQCAGVIN------LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVY-AMAVGND-  240 (308)
Q Consensus       171 dg~v~~wd~~~~~~~~~~~------~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~-~~~~~~~-  240 (308)
                      |++|++||..+++.+..+.      +.....+...++.++++++ |++|++||+.+++++ ++.+|...+. +++|+|+ 
T Consensus       259 D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG  338 (356)
T 2w18_A          259 VFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTD  338 (356)
T ss_dssp             CEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSS
T ss_pred             CcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCC
Confidence            9999999999999887663      2222333334477888876 999999999999988 7888887655 5899999 


Q ss_pred             -EEEEEcCCCeEEEEEcC
Q 021744          241 -LLFAGTQDGAILAWKFN  257 (308)
Q Consensus       241 -~l~~g~~dg~i~iwd~~  257 (308)
                       +|++|+.|++|+|||+.
T Consensus       339 ~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          339 SHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             SEEEEECTTSCEEEEEEC
T ss_pred             CEEEEEECCCcEEEecCC
Confidence             99999999999999963

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=8.9e-28  Score=211.12  Aligned_cols=231  Identities=11%  Similarity=0.074  Sum_probs=179.0

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCC-e-eeccCCCcEEEEECCCCCCc-
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTW-G-RNNNFNNHSNNYRAGNSKNS-  100 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~-~-~s~~~d~~i~vwd~~~~~~~-  100 (308)
                      +.++|+++.|+.|++|+.......+.+  .........+.+|...  +++|+|++. + ++|+.|++|++||+..+... 
T Consensus       141 ~~~lat~~~dg~V~vwd~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  218 (430)
T 2xyi_A          141 ACVIATKTPSSDVLVFDYTKHPSKPEP--SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEH  218 (430)
T ss_dssp             EEEEEEECSSSCEEEEEGGGSCSSCCT--TCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGG
T ss_pred             CcEEEEECCCCcEEEEECCCcccccCc--cccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCC
Confidence            468999999999999998763110000  0001112233467666  899999998 6 99999999999999764321 


Q ss_pred             -----ccccceeeeeeeeeeeecC-Cce-EEeeCCCeEEEEEcCCCc--eeeeEeeCcccceEEEEEeCCCC-EEEEeeC
Q 021744          101 -----NINNRAVIKTDILCRNWVQ-GNC-MYGEKCKFLHSWTVGDGF--KLLTQLEGHQKVVSGITLPSGSD-KLYSGSK  170 (308)
Q Consensus       101 -----~~~~~~~~~~~~~~~~~~~-~~~-~~g~~d~~i~iwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~  170 (308)
                           ......|...+..+.|+|. +.. ++++.|+.|++||+++..  +.+..+..|...|++++|+|++. ++++|+.
T Consensus       219 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~  298 (430)
T 2xyi_A          219 RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA  298 (430)
T ss_dssp             GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEET
T ss_pred             ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeC
Confidence                 1123356667999999994 444 789999999999998762  46777889999999999999887 6899999


Q ss_pred             CCcEEEEeCCC-CeEEEEEe-CCCeeEEE--EcCCC-EEEEEc-CCcEEEEEcCCC--------------cee-eeeCCC
Q 021744          171 DETVRVWDCAS-GQCAGVIN-LGGEVGCM--ISEGP-WIFIGV-TNFVKAWNTQTN--------------TDL-SLSGPV  229 (308)
Q Consensus       171 dg~v~~wd~~~-~~~~~~~~-~~~~v~~~--~~~~~-~l~~~~-d~~i~~wd~~~~--------------~~~-~~~~~~  229 (308)
                      ||+|++||+++ .+++..+. +...+.++  .++++ +|++++ |+.|++||+...              +.+ .+.+|.
T Consensus       299 dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~  378 (430)
T 2xyi_A          299 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT  378 (430)
T ss_dssp             TSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS
T ss_pred             CCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCC
Confidence            99999999998 56677776 77788776  46664 566665 999999999872              333 667899


Q ss_pred             CCEEEEEEeCC---EEEEEcCCCeEEEEEcCC
Q 021744          230 GQVYAMAVGND---LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       230 ~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~  258 (308)
                      ..|++++|+|+   +|++++.||.|++|++..
T Consensus       379 ~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          379 AKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             SCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             CCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            99999999998   899999999999999875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=4.3e-28  Score=210.54  Aligned_cols=221  Identities=14%  Similarity=0.164  Sum_probs=173.4

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCC---Ce-eeccCCCcEEEEECCCCC
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNT---WG-RNNNFNNHSNNYRAGNSK   98 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g---~~-~s~~~d~~i~vwd~~~~~   98 (308)
                      .+.++++++.|+.|++||...+.           ....  ..+...  ++.++|.+   .. ++++.|+.|++||+.+++
T Consensus       111 ~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  177 (408)
T 4a11_B          111 DTGMFTSSSFDKTLKVWDTNTLQ-----------TADV--FNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS  177 (408)
T ss_dssp             CTTCEEEEETTSEEEEEETTTTE-----------EEEE--EECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred             CCcEEEEEeCCCeEEEeeCCCCc-----------ccee--ccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence            45689999999999999988761           1100  011222  67887754   47 999999999999998776


Q ss_pred             CcccccceeeeeeeeeeeecCCc--eEEeeCCCeEEEEEcCCCceeeeEe---------------eCcccceEEEEEeCC
Q 021744           99 NSNINNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQL---------------EGHQKVVSGITLPSG  161 (308)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~iwd~~~~~~~~~~~---------------~~h~~~v~~~~~~~~  161 (308)
                      ... ....|...+.++.|+|++.  +++++.|+.|++||+++....+..+               .+|...|.+++|+|+
T Consensus       178 ~~~-~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  256 (408)
T 4a11_B          178 CSH-ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD  256 (408)
T ss_dssp             CCE-EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred             eee-eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence            543 3445777799999999986  4789999999999998764344444               578999999999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCeEEEEEeCC------Ce-eEEE-E-cCCCEEEEEcCCcEEEEEcCCCcee-eeeCCCCC
Q 021744          162 SDKLYSGSKDETVRVWDCASGQCAGVINLG------GE-VGCM-I-SEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQ  231 (308)
Q Consensus       162 ~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~------~~-v~~~-~-~~~~~l~~~~d~~i~~wd~~~~~~~-~~~~~~~~  231 (308)
                      +++|++++.|+.|++||+++++....+...      .. .... . ....+++++.++.|++||+.+++.+ .+.+|...
T Consensus       257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~  336 (408)
T 4a11_B          257 GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKT  336 (408)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSC
T ss_pred             CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCe
Confidence            999999999999999999998765544311      11 1112 2 2345566667999999999999888 78899999


Q ss_pred             EEEEEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744          232 VYAMAVGND--LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       232 v~~~~~~~~--~l~~g~~dg~i~iwd~~~~  259 (308)
                      |++++|+|+  +|++++.||.|++||+.+.
T Consensus       337 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~  366 (408)
T 4a11_B          337 VDCCVFQSNFQELYSGSRDCNILAWVPSLY  366 (408)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred             EEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence            999999999  9999999999999999987

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.96  E-value=2.5e-28  Score=214.96  Aligned_cols=219  Identities=9%  Similarity=-0.023  Sum_probs=165.3

Q ss_pred             ccccc--eeEEecC-CCe-eeccCCCcEEEEECCCCCCcc-cccceeeeeeeeeeeec-CCc-eEEeeCCCeEEEEEcCC
Q 021744           66 ANGAA--AKRFANN-TWG-RNNNFNNHSNNYRAGNSKNSN-INNRAVIKTDILCRNWV-QGN-CMYGEKCKFLHSWTVGD  138 (308)
Q Consensus        66 gh~~~--~i~~s~~-g~~-~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~-~~~g~~d~~i~iwd~~~  138 (308)
                      +|...  +++|+|. +.+ |+|+.||+|+|||+.+++... ....+|...|.++.|+| ++. +++++.|++|++||+++
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~  196 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG  196 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC
Confidence            55555  8999995 456 999999999999998765432 23457888899999997 454 48999999999999987


Q ss_pred             CceeeeEee--CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEEE--cCCC-EEEEEc-CCc
Q 021744          139 GFKLLTQLE--GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCMI--SEGP-WIFIGV-TNF  211 (308)
Q Consensus       139 ~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~~--~~~~-~l~~~~-d~~  211 (308)
                      . .......  .+...+.+++|+|++.+|++|+.||+|++||++.. .+..+. |...+.++.  +++. ++++++ |+.
T Consensus       197 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~  274 (435)
T 4e54_B          197 N-ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALNPCCDWFLATASVDQT  274 (435)
T ss_dssp             C-EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB
T ss_pred             C-ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeecCCCceEEEEecCcce
Confidence            6 3322222  23456789999999999999999999999999754 444444 777888773  5555 666665 999


Q ss_pred             EEEEEcCCCcee----eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccC-------CCeEE
Q 021744          212 VKAWNTQTNTDL----SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT-------DSNRA  278 (308)
Q Consensus       212 i~~wd~~~~~~~----~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~v~~  278 (308)
                      |++||+++.+..    ...+|...|++++|+|+  +|++++.||.|++||+.++    +....+..|.       ..+..
T Consensus       275 v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~  350 (435)
T 4e54_B          275 VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW----DCPLGLIPHPHRHFQHLTPIKA  350 (435)
T ss_dssp             CCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS----SSEEEECCCCCCCCSSSCCCBC
T ss_pred             eeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC----ccceEEecccccccccceeEEE
Confidence            999999987543    34679999999999999  9999999999999999986    3344443332       12223


Q ss_pred             EEecCCCeEEEe
Q 021744          279 HFSRDVTSLLGS  290 (308)
Q Consensus       279 ~~s~d~~~l~~s  290 (308)
                      .|+|++.+++++
T Consensus       351 ~~~~~~~~~~~~  362 (435)
T 4e54_B          351 AWHPRYNLIVVG  362 (435)
T ss_dssp             EECSSSSCEEEE
T ss_pred             EEcCCCCEEEEE
Confidence            677776666543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.7e-28  Score=230.44  Aligned_cols=275  Identities=9%  Similarity=-0.075  Sum_probs=196.8

Q ss_pred             CceEEecCCCeEEEeecCCCCCC-C----CCcc--cc----------------------cCCCCCCccccccc--eeEEe
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRF-P----CPYL--HR----------------------ELPLPPAATANGAA--AKRFA   75 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~-~----~~~~--~~----------------------~~~~~~~~~gh~~~--~i~~s   75 (308)
                      ..+++++.|++|++|+...+... +    .+.+  |.                      ......++.||...  .++|+
T Consensus       365 ~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~s  444 (902)
T 2oaj_A          365 GLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPA  444 (902)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCC
T ss_pred             eeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccc
Confidence            36788889999999998654210 0    0000  00                      01123356777766  68999


Q ss_pred             cCCCe-eeccCCCcEEEEECCCCCCccccc----------ceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCc---
Q 021744           76 NNTWG-RNNNFNNHSNNYRAGNSKNSNINN----------RAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGF---  140 (308)
Q Consensus        76 ~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~---  140 (308)
                      |+++. |+|+.|++||+||+.+++......          ..|...+..++|+|++.. ++|+.|++|+||++.+++   
T Consensus       445 pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~  524 (902)
T 2oaj_A          445 EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYS  524 (902)
T ss_dssp             SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--
T ss_pred             ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccC
Confidence            99999 999999999999998774321100          156667999999999977 899999999999997651   


Q ss_pred             -----------------------------------------eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeC
Q 021744          141 -----------------------------------------KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC  179 (308)
Q Consensus       141 -----------------------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~  179 (308)
                                                               +++..+.+|.+.|++++|+|+| +|++|+.|++|++||+
T Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~  603 (902)
T 2oaj_A          525 VENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDR  603 (902)
T ss_dssp             -------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEET
T ss_pred             ccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEEC
Confidence                                                     2367788999999999999999 9999999999999999


Q ss_pred             CCCeEEEEE-------eCCCeeEEE--E-----cCC---CEEEEEc-CCcEEEEEc---CCCcee-eeeCC-----CCCE
Q 021744          180 ASGQCAGVI-------NLGGEVGCM--I-----SEG---PWIFIGV-TNFVKAWNT---QTNTDL-SLSGP-----VGQV  232 (308)
Q Consensus       180 ~~~~~~~~~-------~~~~~v~~~--~-----~~~---~~l~~~~-d~~i~~wd~---~~~~~~-~~~~~-----~~~v  232 (308)
                      ++.+.+...       .|...+.++  +     +|+   ++|++|+ |++|++||+   .+++.. .+.+|     .++|
T Consensus       604 ~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v  683 (902)
T 2oaj_A          604 RGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPI  683 (902)
T ss_dssp             TTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCC
T ss_pred             CCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCce
Confidence            988776432       244557766  4     554   6888877 999999999   666654 45444     4677


Q ss_pred             EEEE-Ee----------------------CC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEEE---------
Q 021744          233 YAMA-VG----------------------ND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRAH---------  279 (308)
Q Consensus       233 ~~~~-~~----------------------~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~---------  279 (308)
                      .+++ |+                      ++ ++++++ +..|+||++.++    ++.+....|...+...         
T Consensus       684 ~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~----k~~~k~~~~~~~~~~v~~~~~~~~~  758 (902)
T 2oaj_A          684 HKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGKS----KSTHKGFKYPLAATGLSYISTVEKN  758 (902)
T ss_dssp             CEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTCC----CEEEEECSSCEEEEEEEEEEEECSS
T ss_pred             EEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCccc----cceeeEcccceeeeEEEEEEecccc
Confidence            7776 65                      55 555555 779999999986    5555555554222223         


Q ss_pred             -EecCCCeEEEee---ceEEEEeecCceeEEe
Q 021744          280 -FSRDVTSLLGSV---SFIMFIGQNNKGVVCY  307 (308)
Q Consensus       280 -~s~d~~~l~~s~---s~~i~~~~~~~~~~~~  307 (308)
                       |++++..|++..   .+.+|....-+.+...
T Consensus       759 ~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~  790 (902)
T 2oaj_A          759 NDRKNLTVIITLEINGHLRVFTIPDFKEQMSE  790 (902)
T ss_dssp             SCEEEEEEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ccccCceEEEEEeCCCcEEEEECcchHHHhhc
Confidence             568887777544   5666666666666543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.6e-28  Score=228.68  Aligned_cols=238  Identities=13%  Similarity=0.038  Sum_probs=186.7

Q ss_pred             Cccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC-cccccceeeeeeeeeeeecC--Cce-EEeeCCCeEEEEE
Q 021744           63 AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN-SNINNRAVIKTDILCRNWVQ--GNC-MYGEKCKFLHSWT  135 (308)
Q Consensus        63 ~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~-~~g~~d~~i~iwd  135 (308)
                      .+.+|.+.  +++|+|++++ ++|+.||+|+|||+..+.. .......|...+.++.|+++  +.. ++++.||.|++||
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd   83 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK   83 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence            35688887  8999999999 9999999999999964321 22234567778999999887  655 8999999999999


Q ss_pred             cCCCc-eeeeEeeCcccceEEEEEeCC--CCEEEEeeCCCcEEEEeCCCCeE--EEEE-eCCCeeEEEE--c--------
Q 021744          136 VGDGF-KLLTQLEGHQKVVSGITLPSG--SDKLYSGSKDETVRVWDCASGQC--AGVI-NLGGEVGCMI--S--------  199 (308)
Q Consensus       136 ~~~~~-~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~dg~v~~wd~~~~~~--~~~~-~~~~~v~~~~--~--------  199 (308)
                      +.++. ..+..+.+|...|.+++|+|+  +..+++++.||+|++||++++..  ...+ .+...+.++.  +        
T Consensus        84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~  163 (753)
T 3jro_A           84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE  163 (753)
T ss_dssp             EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC------
T ss_pred             CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccc
Confidence            99872 267788899999999999999  99999999999999999998732  2223 3677777762  4        


Q ss_pred             -----CCCEEEEEc-CCcEEEEEcCCCc----ee-eeeCCCCCEEEEEEeCC-----EEEEEcCCCeEEEEEcCCCCcc-
Q 021744          200 -----EGPWIFIGV-TNFVKAWNTQTNT----DL-SLSGPVGQVYAMAVGND-----LLFAGTQDGAILAWKFNVTTNC-  262 (308)
Q Consensus       200 -----~~~~l~~~~-d~~i~~wd~~~~~----~~-~~~~~~~~v~~~~~~~~-----~l~~g~~dg~i~iwd~~~~~~~-  262 (308)
                           ++.++++++ |+.|++||++++.    .. .+.+|...|++++|+|+     ++++++.||.|++||+.++... 
T Consensus       164 ~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~  243 (753)
T 3jro_A          164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW  243 (753)
T ss_dssp             ---CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC
T ss_pred             cccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc
Confidence                 367788766 9999999998873    33 67789999999999985     8999999999999999986321 


Q ss_pred             cccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEeec
Q 021744          263 FEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQN  300 (308)
Q Consensus       263 ~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~~  300 (308)
                      ...+.....|...+.+ +|+|+++++++++ +..|.++.-
T Consensus       244 ~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~  283 (753)
T 3jro_A          244 KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (753)
T ss_dssp             BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred             eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence            1133444568889988 9999999998655 656666553

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9.5e-28  Score=211.69  Aligned_cols=212  Identities=10%  Similarity=0.036  Sum_probs=165.0

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeee-----eeeeeeeecCCce-EEeeCCCeEEEEEcCCCce--
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIK-----TDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFK--  141 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~--  141 (308)
                      +++|||+|.. |+++.|++|++||.+.  .+. ... |..     .+.+++|+|+|.. ++|+.||+|++||+.++..  
T Consensus        90 ~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~-~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~  165 (588)
T 2j04_A           90 VCKPSPIDDWMAVLSNNGNVSVFKDNK--MLT-NLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENT  165 (588)
T ss_dssp             EEEECSSSSCEEEEETTSCEEEEETTE--EEE-ECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTC
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCc--eee-ecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccc
Confidence            8999999999 9999999999999643  221 122 333     4889999999977 8999999999999998721  


Q ss_pred             ----eeeEe----eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeE---EEEEe--CCCeeEEE-EcCCCEEEEE
Q 021744          142 ----LLTQL----EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC---AGVIN--LGGEVGCM-ISEGPWIFIG  207 (308)
Q Consensus       142 ----~~~~~----~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~---~~~~~--~~~~v~~~-~~~~~~l~~~  207 (308)
                          .+.++    .+|...|.+++|+|++  +++++.|++|++||+..++.   ..++.  +...+.++ +. ++.|+++
T Consensus       166 ~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-g~~LASa  242 (588)
T 2j04_A          166 PEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-DYKVVLT  242 (588)
T ss_dssp             CCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-TTEEEEE
T ss_pred             ccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-CCEEEEE
Confidence                35666    6788899999999998  88999999999999998773   34563  45566655 44 7899988


Q ss_pred             cCCcEEEEEcCCCceeeee-CCCCCEEEEEE--eCC--EEEEEcCCCeEEEEEcCC-----CCc--------------cc
Q 021744          208 VTNFVKAWNTQTNTDLSLS-GPVGQVYAMAV--GND--LLFAGTQDGAILAWKFNV-----TTN--------------CF  263 (308)
Q Consensus       208 ~d~~i~~wd~~~~~~~~~~-~~~~~v~~~~~--~~~--~l~~g~~dg~i~iwd~~~-----~~~--------------~~  263 (308)
                      ++++|++||+.+++...+. +|...+.+++|  +|+  .++++++||+ ++|....     ...              ..
T Consensus       243 ~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g  321 (588)
T 2j04_A          243 CPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIW  321 (588)
T ss_dssp             CSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTT
T ss_pred             eCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCC
Confidence            8999999999999885433 89999999999  999  8999999999 9998732     100              00


Q ss_pred             ccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          264 EPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       264 ~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      ..+..+.+ ...|.+ +|||||+.++++.
T Consensus       322 ~~l~~~~~-~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          322 NEFNNYET-TLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             TSSSSSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred             Cceeeecc-ceEEEEEEECCCCCEEEEEE
Confidence            11222222 445888 9999999988654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.3e-28  Score=214.02  Aligned_cols=222  Identities=8%  Similarity=-0.023  Sum_probs=159.7

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEec--------CCCe-eeccCCCcEEEEEC
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFAN--------NTWG-RNNNFNNHSNNYRA   94 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~--------~g~~-~s~~~d~~i~vwd~   94 (308)
                      +.++|+++.|++||+||...+...       ..+....+.||.+.  +++|+|        ++.+ |+|+.|++|||||+
T Consensus       101 ~~~las~~~d~~v~lw~~~~~~~~-------~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~  173 (393)
T 4gq1_A          101 SLFLACVCQDNTVRLIITKNETII-------TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL  173 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEETTEEE-------EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCccc-------eeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence            457999999999999998765110       01123456799988  899998        7888 99999999999999


Q ss_pred             CCCCCcccccceeeeeeeeeeeecCCc--eEEeeCCCeEEEEEcCCCceeee-------------------------Eee
Q 021744           95 GNSKNSNINNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLT-------------------------QLE  147 (308)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~iwd~~~~~~~~~-------------------------~~~  147 (308)
                      .++.... ....|...+..++|+|++.  +++++.|+.|++||+.++. ...                         ...
T Consensus       174 ~~~~~~~-~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  251 (393)
T 4gq1_A          174 TDEGPIL-AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNL-SAEENSQTELVKNPWLLTLNTLPLVNTCHSS  251 (393)
T ss_dssp             ETTEEEE-EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----------CSCCCSEEEESGGGC------
T ss_pred             CCCceee-eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCc-ccccccccCCcccceEEecccccceeeeecc
Confidence            7664432 3445666789999999873  4899999999999998763 211                         124


Q ss_pred             CcccceEEEEEe-CCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCe-------------------eEEE-Ec--CCCE
Q 021744          148 GHQKVVSGITLP-SGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGE-------------------VGCM-IS--EGPW  203 (308)
Q Consensus       148 ~h~~~v~~~~~~-~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~-------------------v~~~-~~--~~~~  203 (308)
                      +|...+.++.|. ++++.+++++.|+++++||+.+++....+. +...                   +.+. ++  ++.+
T Consensus       252 ~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (393)
T 4gq1_A          252 GIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYF  331 (393)
T ss_dssp             CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEE
T ss_pred             cccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEE
Confidence            678889999987 799999999999999999999876655543 1111                   1111 22  2335


Q ss_pred             EEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcC
Q 021744          204 IFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN  257 (308)
Q Consensus       204 l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~  257 (308)
                      +++|+ |+.|++||+.+++.. ....|..+|++++|+|+  +||+++.+| +.+|.+.
T Consensus       332 ~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          332 ATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             EEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             EEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            55676 999999999998877 67788899999999999  899988765 6666654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1e-26  Score=204.13  Aligned_cols=261  Identities=8%  Similarity=0.006  Sum_probs=198.2

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .+.++++++.|++|++||..++..     . ...+ .....+|...  +++|+|++.. ++++.|++|++||+++++...
T Consensus       133 ~~~~~~~~~~~~~i~~~d~~~g~~-----~-~~~~-~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~  205 (433)
T 3bws_A          133 NTRLAIPLLEDEGMDVLDINSGQT-----V-RLSP-PEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA  205 (433)
T ss_dssp             SSEEEEEBTTSSSEEEEETTTCCE-----E-EECC-CHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE
T ss_pred             CCeEEEEeCCCCeEEEEECCCCeE-----e-eecC-cccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE
Confidence            456788888999999999887621     0 0000 1123456555  7899999999 999999999999998775542


Q ss_pred             cccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEee--------CC
Q 021744          102 INNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS--------KD  171 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--------~d  171 (308)
                       ....+...+..+.|++++..  ++++.|+.|++||+.++ +.+..+..+ ..+.+++|+|+++++++++        .|
T Consensus       206 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~-~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~d  282 (433)
T 3bws_A          206 -TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK-LEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGG  282 (433)
T ss_dssp             -EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT-EEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCC
T ss_pred             -EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC-cEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCC
Confidence             22244556888999999965  45558999999999988 677777654 5689999999999998888        58


Q ss_pred             CcEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEE-EEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEE
Q 021744          172 ETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIF-IGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAG  245 (308)
Q Consensus       172 g~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~-~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g  245 (308)
                      +.|++||+++++.+..+.+...+..+  .++++.++ ++. ++.|++||+.+++......+...+.+++|+|+  +++++
T Consensus       283 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  362 (433)
T 3bws_A          283 GRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVS  362 (433)
T ss_dssp             EEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEE
T ss_pred             CeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEE
Confidence            89999999999988887655455444  57787665 545 89999999999888744457788999999999  67766


Q ss_pred             cC---------------CCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee--ceEEEEeec
Q 021744          246 TQ---------------DGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV--SFIMFIGQN  300 (308)
Q Consensus       246 ~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~--s~~i~~~~~  300 (308)
                      +.               ||.|++||+.++    +.+..+..+ ..+.. +|+|++++|++++  +..|.++.-
T Consensus       363 ~~~~~~~~~~~~~~g~~dg~v~~~d~~~~----~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~  430 (433)
T 3bws_A          363 CRGPNHPTEGYLKKGLVLGKVYVIDTTTD----TVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRR  430 (433)
T ss_dssp             ECCCCCTTTCTTSCCSSCCEEEEEETTTT----EEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             ecCCCccccccccccccceEEEEEECCCC----cEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence            65               579999999886    666666654 46677 9999999988654  566666543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=3.7e-27  Score=202.03  Aligned_cols=221  Identities=9%  Similarity=0.059  Sum_probs=166.1

Q ss_pred             ccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCC
Q 021744           64 ATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGD  138 (308)
Q Consensus        64 ~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~  138 (308)
                      ..+|...  +++|+|+|.+ ++|+.|+ +++||+++.+....   .+...+..+.+.+.+..  ++++.|+.|++||+.+
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~   90 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS---QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK   90 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE---EECSCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee---eecCCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence            3566666  8999999999 7777664 89999876543311   11123566667766654  6788899999999999


Q ss_pred             CceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC-eEEEEEeCCCeeEEEEcCCCEEEE--Ec-CCcEEE
Q 021744          139 GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG-QCAGVINLGGEVGCMISEGPWIFI--GV-TNFVKA  214 (308)
Q Consensus       139 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~-~~~~~~~~~~~v~~~~~~~~~l~~--~~-d~~i~~  214 (308)
                      + +.+..+. |...|.+++++++.  ++.+ .|+.|++||+.++ +.+..+.....+.++.+  .+++.  |. ++.|++
T Consensus        91 ~-~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g~v~i  163 (355)
T 3vu4_A           91 K-QDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLGQIHI  163 (355)
T ss_dssp             T-EEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTTCEEE
T ss_pred             C-cEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCcEEEE
Confidence            9 7788877 67799999998763  4433 4789999999988 66655554222334445  66665  44 899999


Q ss_pred             EEcCCCc-----------------eeeeeCCCCCEEEEEEeCC--EEEEEcCCCe-EEEEEcCCCCcccccceecc-c-c
Q 021744          215 WNTQTNT-----------------DLSLSGPVGQVYAMAVGND--LLFAGTQDGA-ILAWKFNVTTNCFEPAASLK-V-H  272 (308)
Q Consensus       215 wd~~~~~-----------------~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~-i~iwd~~~~~~~~~~~~~~~-~-~  272 (308)
                      ||+++++                 ...+.+|...|++++|+|+  +|++|+.|++ |++||++++    +++..+. + |
T Consensus       164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~----~~~~~~~~g~h  239 (355)
T 3vu4_A          164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG----VLVREFRRGLD  239 (355)
T ss_dssp             EECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC----CEEEEEECTTC
T ss_pred             EECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC----cEEEEEEcCCC
Confidence            9999865                 4578899999999999999  9999999998 999999987    7778887 5 9


Q ss_pred             CCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          273 TDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       273 ~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      ...|.+ +|+|++++|++++ +..+.++.
T Consensus       240 ~~~v~~~~~s~~~~~l~s~s~d~~v~iw~  268 (355)
T 3vu4_A          240 RADVVDMKWSTDGSKLAVVSDKWTLHVFE  268 (355)
T ss_dssp             CSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence            999999 9999999998665 55555554

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=1.1e-26  Score=199.13  Aligned_cols=241  Identities=7%  Similarity=-0.024  Sum_probs=170.5

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe--eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      +.+||+|+.|+ +++|+......   .. ..         .+.+. .+++.++++.  ++++.|++|++||+.+++.+. 
T Consensus        31 g~~la~g~~~~-~~iw~~~~~~~---~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~-   95 (355)
T 3vu4_A           31 QSCLILSTLKS-FEIYNVHPVAH---IM-SQ---------EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVS-   95 (355)
T ss_dssp             SSEEEEECSSE-EEEEEETTEEE---EE-EE---------ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEE-
T ss_pred             CCEEEEEcCCE-EEEEecCCcce---ee-ee---------ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEE-
Confidence            56788887664 78999776510   00 00         00112 5788888887  678889999999998887653 


Q ss_pred             ccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEE--eeCCCcEEEEeCC
Q 021744          103 NNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYS--GSKDETVRVWDCA  180 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s--~s~dg~v~~wd~~  180 (308)
                       ...+...+..+.++++...+  ..|+.|++||+.+..+.+..+..   +...+++++  .+++.  |+.||.|++||++
T Consensus        96 -~~~~~~~v~~v~~~~~~~~~--~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~  167 (355)
T 3vu4_A           96 -RIKVDAPVKDLFLSREFIVV--SYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQ  167 (355)
T ss_dssp             -EEECSSCEEEEEECSSEEEE--EETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECC
T ss_pred             -EEECCCceEEEEEcCCEEEE--EEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECC
Confidence             22345567888887764333  35789999999876334555543   444566676  55555  6899999999999


Q ss_pred             CCe---------------E-EEEEe-CCCeeEEE--EcCCCEEEEEc-CCc-EEEEEcCCCcee-eee-C-CCCCEEEEE
Q 021744          181 SGQ---------------C-AGVIN-LGGEVGCM--ISEGPWIFIGV-TNF-VKAWNTQTNTDL-SLS-G-PVGQVYAMA  236 (308)
Q Consensus       181 ~~~---------------~-~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~-i~~wd~~~~~~~-~~~-~-~~~~v~~~~  236 (308)
                      +++               + +..+. |...+.++  .+++++|++++ |++ |++||+++++.+ .+. + |...|++++
T Consensus       168 ~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~  247 (355)
T 3vu4_A          168 SSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMK  247 (355)
T ss_dssp             C------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEE
T ss_pred             CCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEE
Confidence            865               1 45555 77888876  47899999877 998 999999999887 666 5 999999999


Q ss_pred             EeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccc---------------------cCCCeEE-EEecCCCeEEEee
Q 021744          237 VGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKV---------------------HTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       237 ~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~---------------------~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      |+|+  +|++++.|+.|++||++....  .....+..                     +...... +|++|++++++.+
T Consensus       248 ~s~~~~~l~s~s~d~~v~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~  324 (355)
T 3vu4_A          248 WSTDGSKLAVVSDKWTLHVFEIFNDQD--NKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWP  324 (355)
T ss_dssp             ECTTSCEEEEEETTCEEEEEESSCCSC--CCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEET
T ss_pred             ECCCCCEEEEEECCCEEEEEEccCCCC--cccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEe
Confidence            9999  999999999999999986532  11111111                     1112245 9999998888665

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.2e-28  Score=226.12  Aligned_cols=223  Identities=11%  Similarity=0.084  Sum_probs=179.5

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecC--CCe-eeccCCCcEEEEECCCCCC-
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANN--TWG-RNNNFNNHSNNYRAGNSKN-   99 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~--g~~-~s~~~d~~i~vwd~~~~~~-   99 (308)
                      +.++++++.|++|++|+.....          ......+.+|...  +++|+|+  +.+ ++|+.|++|++||+.+++. 
T Consensus        21 g~~latg~~dg~I~vwd~~~~~----------~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~   90 (753)
T 3jro_A           21 GKRLATCSSDKTIKIFEVEGET----------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS   90 (753)
T ss_dssp             SCCEEEEETTTEEEEEEEETTE----------EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCeEEEEECCCcEEEEecCCCC----------CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccc
Confidence            5689999999999999987430          1112234577766  8999988  888 9999999999999987642 


Q ss_pred             cccccceeeeeeeeeeeecC--Cce-EEeeCCCeEEEEEcCCCc-eeeeEeeCcccceEEEEEeC-------------CC
Q 021744          100 SNINNRAVIKTDILCRNWVQ--GNC-MYGEKCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPS-------------GS  162 (308)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~--~~~-~~g~~d~~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~~~-------------~~  162 (308)
                      .......|...+.++.|+|+  +.. ++|+.|+.|++||+.+.. .....+.+|...|.+++|+|             ++
T Consensus        91 ~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~  170 (753)
T 3jro_A           91 QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES  170 (753)
T ss_dssp             EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGG
T ss_pred             ccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCC
Confidence            11233556777999999998  755 899999999999998762 33556778999999999999             58


Q ss_pred             CEEEEeeCCCcEEEEeCCCC----eEEEEEe-CCCeeEEE--EcC---CCEEEEEc-CCcEEEEEcCCCce------eee
Q 021744          163 DKLYSGSKDETVRVWDCASG----QCAGVIN-LGGEVGCM--ISE---GPWIFIGV-TNFVKAWNTQTNTD------LSL  225 (308)
Q Consensus       163 ~~l~s~s~dg~v~~wd~~~~----~~~~~~~-~~~~v~~~--~~~---~~~l~~~~-d~~i~~wd~~~~~~------~~~  225 (308)
                      .++++|+.||+|++||++++    ..+..+. |...+.++  .|+   ++++++++ |+.|++||+++++.      ...
T Consensus       171 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~  250 (753)
T 3jro_A          171 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE  250 (753)
T ss_dssp             CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSS
T ss_pred             CEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEecc
Confidence            99999999999999999876    4445555 67778776  466   78888776 99999999998742      244


Q ss_pred             eCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCC
Q 021744          226 SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       226 ~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~  258 (308)
                      ..|...|++++|+|+  ++++++.||.|++|++..
T Consensus       251 ~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          251 EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             SCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             CCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            568889999999999  899999999999999884

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.5e-27  Score=223.69  Aligned_cols=188  Identities=11%  Similarity=0.017  Sum_probs=155.4

Q ss_pred             ccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCc-eEEeeCCCeEEEEEcCCCce
Q 021744           66 ANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGN-CMYGEKCKFLHSWTVGDGFK  141 (308)
Q Consensus        66 gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~d~~i~iwd~~~~~~  141 (308)
                      ||...  +++|+|++.+ |+|+.|++|+||+....+...  ...|...+..+.|++ +. +++++.|+.|++||+.++ +
T Consensus        15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~--~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~-~   90 (902)
T 2oaj_A           15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI--KLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ-K   90 (902)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE--ECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC-S
T ss_pred             CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE--EcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC-c
Confidence            66666  8999999999 999999999999987654432  223556699999999 66 599999999999999998 6


Q ss_pred             eeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEE-EE----------e-CCCeeEEE--EcC-CCEEEE
Q 021744          142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG-VI----------N-LGGEVGCM--ISE-GPWIFI  206 (308)
Q Consensus       142 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~-~~----------~-~~~~v~~~--~~~-~~~l~~  206 (308)
                      .+..+. |...|++++|+|++++|++|+.||+|++||+++++... .+          . |...+.++  .|+ +..+++
T Consensus        91 ~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~  169 (902)
T 2oaj_A           91 VLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI  169 (902)
T ss_dssp             EEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE
T ss_pred             EEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEE
Confidence            777776 77899999999999999999999999999999887641 11          1 45567666  354 356777


Q ss_pred             Ec-CCcEEEEEcCCCcee-eeeCC------------------CCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744          207 GV-TNFVKAWNTQTNTDL-SLSGP------------------VGQVYAMAVGND--LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       207 ~~-d~~i~~wd~~~~~~~-~~~~~------------------~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~  259 (308)
                      |+ |+.| +||+++++.. .+..|                  ...|++++|+|+  +|++++.||.|++||++++
T Consensus       170 g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g  243 (902)
T 2oaj_A          170 SYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG  243 (902)
T ss_dssp             ECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred             EeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence            76 8999 9999998876 55444                  477999999999  9999999999999999886

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.2e-26  Score=203.36  Aligned_cols=223  Identities=13%  Similarity=0.045  Sum_probs=174.8

Q ss_pred             eeEEecCCCeeeccCCCcEEEEECCCCC---Cccccc-------------------------------------------
Q 021744           71 AKRFANNTWGRNNNFNNHSNNYRAGNSK---NSNINN-------------------------------------------  104 (308)
Q Consensus        71 ~i~~s~~g~~~s~~~d~~i~vwd~~~~~---~~~~~~-------------------------------------------  104 (308)
                      +++|+|+|+++.++.++.|++||+.+++   .+....                                           
T Consensus         9 ~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (450)
T 2vdu_B            9 NLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTA   88 (450)
T ss_dssp             EEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC----------------------------------------
T ss_pred             EEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccccC
Confidence            6899999999445568899999998776   221110                                           


Q ss_pred             ----------ceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcC--CCceeeeEee--CcccceEEEEEeCCCCEEEEe
Q 021744          105 ----------RAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVG--DGFKLLTQLE--GHQKVVSGITLPSGSDKLYSG  168 (308)
Q Consensus       105 ----------~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~--~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~  168 (308)
                                ..+...+.++.|+|++..  ++++.|+.|++||+.  ++ +.+..+.  .|...|.+++|+|++++|+++
T Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  167 (450)
T 2vdu_B           89 AKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK-NVLKLRKRFCFSKRPNAISIAEDDTTVIIA  167 (450)
T ss_dssp             -----------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS-SCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             ccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC-ceeeeeecccCCCCceEEEEcCCCCEEEEE
Confidence                      012225889999999966  678899999999998  66 6677765  567899999999999999999


Q ss_pred             eCCCcEEEEeCCCCeEEE----EEe-CCCeeEEE--EcC---CCEEEEEc-CCcEEEEEcCCCcee-e-eeCCCCCEEEE
Q 021744          169 SKDETVRVWDCASGQCAG----VIN-LGGEVGCM--ISE---GPWIFIGV-TNFVKAWNTQTNTDL-S-LSGPVGQVYAM  235 (308)
Q Consensus       169 s~dg~v~~wd~~~~~~~~----~~~-~~~~v~~~--~~~---~~~l~~~~-d~~i~~wd~~~~~~~-~-~~~~~~~v~~~  235 (308)
                      +.|+.|++|++.+++...    .+. +...+.++  .++   +++|++++ |+.|++||+++++.. . +.+|...|.++
T Consensus       168 ~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~  247 (450)
T 2vdu_B          168 DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSI  247 (450)
T ss_dssp             ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEE
T ss_pred             eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEE
Confidence            999999999998876543    333 67777766  577   77888776 999999999998876 4 56899999999


Q ss_pred             EEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecc-------------------------ccCCCeEE-EEecCCCeE
Q 021744          236 AVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK-------------------------VHTDSNRA-HFSRDVTSL  287 (308)
Q Consensus       236 ~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-------------------------~~~~~v~~-~~s~d~~~l  287 (308)
                      +|+ +  +|++++.|+.|++||+.++    +++..+.                         .....+.. +|+|++++|
T Consensus       248 ~~s-d~~~l~s~~~d~~v~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  322 (450)
T 2vdu_B          248 CCG-KDYLLLSAGGDDKIFAWDWKTG----KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV  322 (450)
T ss_dssp             EEC-STTEEEEEESSSEEEEEETTTC----CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred             EEC-CCCEEEEEeCCCeEEEEECCCC----cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence            999 7  9999999999999999987    4444443                         22346777 999999999


Q ss_pred             EEee--ceEEEEee
Q 021744          288 LGSV--SFIMFIGQ  299 (308)
Q Consensus       288 ~~s~--s~~i~~~~  299 (308)
                      ++++  +..|.++.
T Consensus       323 ~~~~~~d~~i~iw~  336 (450)
T 2vdu_B          323 AFFVEATKCIIILE  336 (450)
T ss_dssp             EEEETTCSEEEEEE
T ss_pred             EEEECCCCeEEEEE
Confidence            8665  44444443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=1e-25  Score=197.75  Aligned_cols=215  Identities=13%  Similarity=0.068  Sum_probs=176.2

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCccc----ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeee
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI----NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLT  144 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~  144 (308)
                      +++|+|++.+ ++++.|++|++||+.+++....    ....|...+..+.+.+++.. ++++.|+.|++||++++ +.+.
T Consensus       127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~-~~~~  205 (433)
T 3bws_A          127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL-AYKA  205 (433)
T ss_dssp             CCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC-CEEE
T ss_pred             EEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc-eEEE
Confidence            6899997777 8888999999999988765432    12345566888999888876 78889999999999988 7888


Q ss_pred             EeeCcccceEEEEEeCCCCEEE-EeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEEEEc---------CCcE
Q 021744          145 QLEGHQKVVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGV---------TNFV  212 (308)
Q Consensus       145 ~~~~h~~~v~~~~~~~~~~~l~-s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~---------d~~i  212 (308)
                      .+..|...+.+++|+|+++.++ +++.|+.|++||+++++.+..+.....+.++  .+++++++++.         |+.|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i  285 (433)
T 3bws_A          206 TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRL  285 (433)
T ss_dssp             EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEE
T ss_pred             EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeE
Confidence            8888999999999999998874 5558999999999999998888866666655  47888887654         6799


Q ss_pred             EEEEcCCCceeeeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE
Q 021744          213 KAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL  288 (308)
Q Consensus       213 ~~wd~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~  288 (308)
                      ++||+++++......+...+.+++|+|+   ++++++.|+.|++||+.++    +.+..+. +...+.. +|+|++++|+
T Consensus       286 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~----~~~~~~~-~~~~~~~~~~s~dg~~l~  360 (433)
T 3bws_A          286 GIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK----KVQKSIP-VFDKPNTIALSPDGKYLY  360 (433)
T ss_dssp             EEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT----EEEEEEE-CSSSEEEEEECTTSSEEE
T ss_pred             EEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC----cEEEEec-CCCCCCeEEEcCCCCEEE
Confidence            9999999988755566678999999998   5677799999999999976    5555554 5666777 9999999888


Q ss_pred             Eee
Q 021744          289 GSV  291 (308)
Q Consensus       289 ~s~  291 (308)
                      ++.
T Consensus       361 ~~~  363 (433)
T 3bws_A          361 VSC  363 (433)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            655

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=1.3e-24  Score=188.05  Aligned_cols=227  Identities=11%  Similarity=0.066  Sum_probs=174.5

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe--eeccCCCcEEEEECCCCCCcccc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      .++++++.|++|++||..+++           ... ....+... +++|+|++++  ++++.|++|++||+.+++...  
T Consensus        45 ~l~~~~~~d~~i~v~d~~~~~-----------~~~-~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~--  110 (391)
T 1l0q_A           45 KVYVANAHSNDVSIIDTATNN-----------VIA-TVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG--  110 (391)
T ss_dssp             EEEEEEGGGTEEEEEETTTTE-----------EEE-EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE--
T ss_pred             EEEEECCCCCeEEEEECCCCe-----------EEE-EEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE--
Confidence            345888899999999988761           111 11122223 7999999997  566678999999998876542  


Q ss_pred             cceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEE-EEeeCCCcEEEEeCC
Q 021744          104 NRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKL-YSGSKDETVRVWDCA  180 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~v~~wd~~  180 (308)
                      ...+...+..+.|++++..  ++++.++.|++||+.++ +.+..+..| ..+.+++|+|+++++ ++++.++.|++||++
T Consensus       111 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~  188 (391)
T 1l0q_A          111 TVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-AVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTV  188 (391)
T ss_dssp             EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence            2223345788899999964  57788999999999998 777777765 456999999999887 677889999999999


Q ss_pred             CCeEEEEEeCCCeeEEE--EcCCCEEEEE----cCCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EE-EEEcCCCe
Q 021744          181 SGQCAGVINLGGEVGCM--ISEGPWIFIG----VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LL-FAGTQDGA  250 (308)
Q Consensus       181 ~~~~~~~~~~~~~v~~~--~~~~~~l~~~----~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l-~~g~~dg~  250 (308)
                      +++.+..+.+...+.++  .+++++++++    .++.|++||+++++.+ .+..+ ..+.+++|+|+  ++ ++++.|+.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~  267 (391)
T 1l0q_A          189 TNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFXNT  267 (391)
T ss_dssp             TTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC-CCccEEEEccCCCEEEEEcCCCCE
Confidence            99999888877766655  4788888765    4789999999999877 55554 45889999998  45 67789999


Q ss_pred             EEEEEcCCCCcccccceeccccCC
Q 021744          251 ILAWKFNVTTNCFEPAASLKVHTD  274 (308)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~~~~~  274 (308)
                      |++||+.++    +.+..+..+..
T Consensus       268 v~v~d~~~~----~~~~~~~~~~~  287 (391)
T 1l0q_A          268 VSVIDTATN----TITATMAVGKN  287 (391)
T ss_dssp             EEEEETTTT----EEEEEEECSSS
T ss_pred             EEEEECCCC----cEEEEEECCcC
Confidence            999999986    55555554433

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=2.1e-24  Score=179.46  Aligned_cols=168  Identities=15%  Similarity=0.129  Sum_probs=131.4

Q ss_pred             CCCeEEEEEcCC-CceeeeEeeCcccceEEEEEeC---CCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCC---eeE--E
Q 021744          127 KCKFLHSWTVGD-GFKLLTQLEGHQKVVSGITLPS---GSDKLYSGSKDETVRVWDCASGQCAGVIN-LGG---EVG--C  196 (308)
Q Consensus       127 ~d~~i~iwd~~~-~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~---~v~--~  196 (308)
                      .|+.|++|++.. + +.+..+.+|...+..++|+|   ++..|++++.|++|++||+++++++.++. +..   .+.  .
T Consensus       155 ~d~~V~~~~~s~dG-~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~va  233 (356)
T 2w18_A          155 SDQQVEVMTFAEDG-GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKA  233 (356)
T ss_dssp             TTCEEEEEEECTTS-CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEE
T ss_pred             CCCcEEEEEECCCC-ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEE
Confidence            489999999954 5 67788888999999999998   67999999999999999999999999997 322   232  3


Q ss_pred             EEcCCCEE------------EEEc-CCcEEEEEcCCCcee-ee-----eCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcC
Q 021744          197 MISEGPWI------------FIGV-TNFVKAWNTQTNTDL-SL-----SGPVGQVYAMAVGNDLLFAGTQDGAILAWKFN  257 (308)
Q Consensus       197 ~~~~~~~l------------~~~~-d~~i~~wd~~~~~~~-~~-----~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~  257 (308)
                      ++|+++++            ++|+ |++|++||..+++.+ .+     .+|...+.+..++..++++++.|++|+|||+.
T Consensus       234 fSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~  313 (356)
T 2w18_A          234 YSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLL  313 (356)
T ss_dssp             EEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred             ECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECC
Confidence            46777766            3455 889999999999876 22     36766666666664489999999999999999


Q ss_pred             CCCcccccceeccccCCC-eEE-EEecCCCeEEEee-ceEEEEee
Q 021744          258 VTTNCFEPAASLKVHTDS-NRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~-v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      ++    +.+.++.+|... +.+ +|+|||++|++++ +..|+++.
T Consensus       314 tG----k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd  354 (356)
T 2w18_A          314 LG----QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH  354 (356)
T ss_dssp             TC----SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             CC----cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence            98    788899988775 445 9999999998665 77777664

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=1.3e-23  Score=183.62  Aligned_cols=256  Identities=11%  Similarity=-0.021  Sum_probs=181.2

Q ss_pred             CCceEEec----CCC----eEEEeec--CCCCCCCCCcccccCCCCCCccccccc--eeEEec--------------CCC
Q 021744           26 GGLSTADT----RQK----VCNYWRA--GKCNRFPCPYLHRELPLPPAATANGAA--AKRFAN--------------NTW   79 (308)
Q Consensus        26 ~~~~~s~s----~d~----~i~~W~~--~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~--------------~g~   79 (308)
                      ..++++|+    .|+    ++++||.  .+++.     +     ....+.+|...  .+++++              .+.
T Consensus        75 ~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~  144 (415)
T 2hqs_A           75 IDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTV-----L-----AQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRT  144 (415)
T ss_dssp             CCEEEEEEEEECTTSCEEEEEEEEECSSSTTCE-----E-----EEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTC
T ss_pred             CCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCE-----E-----eeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCC
Confidence            45677776    467    9999999  77610     0     01223445444  344443              144


Q ss_pred             e-eeccCC------CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCC---eEEEEEcCCCceeeeEeeC
Q 021744           80 G-RNNNFN------NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCK---FLHSWTVGDGFKLLTQLEG  148 (308)
Q Consensus        80 ~-~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~---~i~iwd~~~~~~~~~~~~~  148 (308)
                      . +.++.+      ++|++||++....  .....|...+..+.|+|++.. ++++.++   .|++||+.++ +. ..+..
T Consensus       145 ~l~~~s~~~~~~~~~~i~i~d~~g~~~--~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg-~~-~~l~~  220 (415)
T 2hqs_A          145 RIAYVVQTNGGQFPYELRVSDYDGYNQ--FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG-AV-RQVAS  220 (415)
T ss_dssp             EEEEEEECSSSSCCEEEEEEETTSCSC--EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-CE-EEEEC
T ss_pred             EEEEEEecCCCCccceEEEEcCCCCCC--EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC-cE-EEeec
Confidence            4 444433      7999999975432  234456667999999999976 7777664   9999999988 44 35777


Q ss_pred             cccceEEEEEeCCCCEEE-EeeCCCc--EEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEEEEc--CC--cEEEEEcCC
Q 021744          149 HQKVVSGITLPSGSDKLY-SGSKDET--VRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGV--TN--FVKAWNTQT  219 (308)
Q Consensus       149 h~~~v~~~~~~~~~~~l~-s~s~dg~--v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~--d~--~i~~wd~~~  219 (308)
                      |...+.+++|+|++++|+ +++.++.  |++||+++++......+...+.++  +|++++|+.++  ++  .|.+||+.+
T Consensus       221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~  300 (415)
T 2hqs_A          221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING  300 (415)
T ss_dssp             CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC
Confidence            888999999999999877 7776665  999999988764433455555554  58899888654  34  788889998


Q ss_pred             CceeeeeCCCCCEEEEEEeCC--EEEEEcCC---CeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-c
Q 021744          220 NTDLSLSGPVGQVYAMAVGND--LLFAGTQD---GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-S  292 (308)
Q Consensus       220 ~~~~~~~~~~~~v~~~~~~~~--~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s  292 (308)
                      ++...+..+...+.+++|+|+  +|++++.+   ..|++||+.++    +. ..+..+. .+.. +|+|||++|+.+. .
T Consensus       301 ~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~----~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~  374 (415)
T 2hqs_A          301 GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG----GV-QVLSSTF-LDETPSLAPNGTMVIYSSSQ  374 (415)
T ss_dssp             SCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC----CE-EECCCSS-SCEEEEECTTSSEEEEEEEE
T ss_pred             CCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC----CE-EEecCCC-CcCCeEEcCCCCEEEEEEcC
Confidence            887766677788999999999  77766653   58999999986    32 3455554 6777 9999999888554 2


Q ss_pred             ---eEEEEeecC
Q 021744          293 ---FIMFIGQNN  301 (308)
Q Consensus       293 ---~~i~~~~~~  301 (308)
                         ..||++...
T Consensus       375 ~~~~~l~~~d~~  386 (415)
T 2hqs_A          375 GMGSVLNLVSTD  386 (415)
T ss_dssp             TTEEEEEEEETT
T ss_pred             CCccEEEEEECC
Confidence               267777643

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=1e-23  Score=184.26  Aligned_cols=236  Identities=10%  Similarity=-0.022  Sum_probs=179.2

Q ss_pred             CCceEEecCC------CeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCC---cEEEEE
Q 021744           26 GGLSTADTRQ------KVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNN---HSNNYR   93 (308)
Q Consensus        26 ~~~~~s~s~d------~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~---~i~vwd   93 (308)
                      +..++.++.+      ++|++||....             ....+.+|...  +++|+|+|+. ++++.|+   +|++||
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~-------------~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d  209 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGY-------------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQT  209 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSC-------------SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCC-------------CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEE
Confidence            4566666654      79999998754             12233455545  7999999999 8888875   999999


Q ss_pred             CCCCCCcccccceeeeeeeeeeeecCCce-E-EeeCCC--eEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEee
Q 021744           94 AGNSKNSNINNRAVIKTDILCRNWVQGNC-M-YGEKCK--FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS  169 (308)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~d~--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s  169 (308)
                      +.+++..  ....+...+..+.|+|+|.. + +++.++  .|++||+.++ +. ..+..|...+.+++|+|++++|++++
T Consensus       210 ~~tg~~~--~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~-~~-~~l~~~~~~~~~~~~spdg~~l~~~s  285 (415)
T 2hqs_A          210 LANGAVR--QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-QI-RQVTDGRSNNTEPTWFPDSQNLAFTS  285 (415)
T ss_dssp             TTTCCEE--EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-CE-EECCCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCcEE--EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC-CE-EeCcCCCCcccceEECCCCCEEEEEE
Confidence            9887653  33445556889999999975 4 555554  4999999887 33 56778889999999999999988887


Q ss_pred             C-CC--cEEEEeCCCCeEEEEEeCCCeeEE--EEcCCCEEEEEc-C---CcEEEEEcCCCceeeeeCCCCCEEEEEEeCC
Q 021744          170 K-DE--TVRVWDCASGQCAGVINLGGEVGC--MISEGPWIFIGV-T---NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND  240 (308)
Q Consensus       170 ~-dg--~v~~wd~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~-d---~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~  240 (308)
                      . ++  .|.+||+.+++......+...+..  +++++++|+.+. +   ..|.+||+.+++...+..+. .+.+++|+|+
T Consensus       286 ~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spd  364 (415)
T 2hqs_A          286 DQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPN  364 (415)
T ss_dssp             CTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTT
T ss_pred             CCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCC
Confidence            6 44  688889988775433334455544  358899988654 3   48999999999887666665 8999999999


Q ss_pred             --EEEEEcCCC---eEEEEEcCCCCcccccceeccccCCCeEE-EEecCC
Q 021744          241 --LLFAGTQDG---AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDV  284 (308)
Q Consensus       241 --~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~  284 (308)
                        +|++++.++   .|++||+..     .....+..|...|.. +|+|..
T Consensus       365 g~~l~~~s~~~~~~~l~~~d~~g-----~~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          365 GTMVIYSSSQGMGSVLNLVSTDG-----RFKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             SSEEEEEEEETTEEEEEEEETTS-----CCEEECCCSSSEEEEEEECCCC
T ss_pred             CCEEEEEEcCCCccEEEEEECCC-----CcEEEeeCCCCCCcCCcccccc
Confidence              777777766   799999875     556778889999999 999964

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=1.3e-22  Score=182.81  Aligned_cols=262  Identities=9%  Similarity=-0.053  Sum_probs=188.6

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEEC--CCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRA--GNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~--~~~~~~~~  102 (308)
                      +.++++++.|++|++||..++.           .......++....++|+|+|++ ++++.|++|++||+  .+++.+..
T Consensus       149 ~~~~vs~~~d~~V~v~D~~t~~-----------~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~  217 (543)
T 1nir_A          149 NLFSVTLRDAGQIALVDGDSKK-----------IVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE  217 (543)
T ss_dssp             GEEEEEEGGGTEEEEEETTTCC-----------EEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             CEEEEEEcCCCeEEEEECCCce-----------EEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE
Confidence            5688999999999999988761           1111111333127899999999 99999999999999  66654321


Q ss_pred             ccceeeeeeeeeeeec----CCce-EEee-CCCeEEEEEcCCCceeeeEeeC----------ccc-ceEEEEEeCCCC-E
Q 021744          103 NNRAVIKTDILCRNWV----QGNC-MYGE-KCKFLHSWTVGDGFKLLTQLEG----------HQK-VVSGITLPSGSD-K  164 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~----~~~~-~~g~-~d~~i~iwd~~~~~~~~~~~~~----------h~~-~v~~~~~~~~~~-~  164 (308)
                        ..+...+..+.|+|    ++.. ++++ .++.|.+||..+. +.+..+..          |.. .+..+.++|++. +
T Consensus       218 --i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~-~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~  294 (543)
T 1nir_A          218 --IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF  294 (543)
T ss_dssp             --EECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred             --EecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc-ccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence              22334478899999    8876 4555 5899999999998 77777764          223 788999999765 4


Q ss_pred             EEEeeCCCcEEEEeCCCCeEEE--EEeCCCeeE--EEEcCCCEEEEE-c-CCcEEEEEcCCCcee-eeeC----CCCCEE
Q 021744          165 LYSGSKDETVRVWDCASGQCAG--VINLGGEVG--CMISEGPWIFIG-V-TNFVKAWNTQTNTDL-SLSG----PVGQVY  233 (308)
Q Consensus       165 l~s~s~dg~v~~wd~~~~~~~~--~~~~~~~v~--~~~~~~~~l~~~-~-d~~i~~wd~~~~~~~-~~~~----~~~~v~  233 (308)
                      +++...+++|.+||+.+.+.+.  .+.+...+.  .+.+++++++++ . +++|.+||+.++++. .+..    |.....
T Consensus       295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~  374 (543)
T 1nir_A          295 IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA  374 (543)
T ss_dssp             EEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCE
T ss_pred             EEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCc
Confidence            6778889999999998866544  444433333  446889977754 4 889999999999887 4443    554444


Q ss_pred             EEEEeCC---EEEEEc-CCCeEEEEEcCCCC---cccccceeccccCCCeEE-EEecCCCeEEEee----------ceEE
Q 021744          234 AMAVGND---LLFAGT-QDGAILAWKFNVTT---NCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV----------SFIM  295 (308)
Q Consensus       234 ~~~~~~~---~l~~g~-~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~----------s~~i  295 (308)
                      .+ ++|+   .++++. .|++|.+||+.+..   ..++.++++..|...+.. +|+|++++|.+..          ++.+
T Consensus       375 ~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v  453 (543)
T 1nir_A          375 NF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAV  453 (543)
T ss_dssp             EE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEE
T ss_pred             cc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEE
Confidence            44 4676   666665 68999999998721   113788899998887776 9999999999764          5555


Q ss_pred             EEeecCc
Q 021744          296 FIGQNNK  302 (308)
Q Consensus       296 ~~~~~~~  302 (308)
                      |-..+.+
T Consensus       454 ~d~~~~~  460 (543)
T 1nir_A          454 FDLKNLD  460 (543)
T ss_dssp             EETTCTT
T ss_pred             EECCCCC
Confidence            5554444

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=9.6e-23  Score=168.82  Aligned_cols=242  Identities=8%  Similarity=0.015  Sum_probs=168.5

Q ss_pred             EecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCC-CCCcccccce
Q 021744           31 ADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGN-SKNSNINNRA  106 (308)
Q Consensus        31 s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~-~~~~~~~~~~  106 (308)
                      +++.|++|++||..++           ..  ..+..|...  +++|+|+|++ ++++ ++.|++||+++ ++........
T Consensus        17 ~~~~~~~i~~~d~~~~-----------~~--~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~   82 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTR-----------KM--RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGF   82 (297)
T ss_dssp             -CCCCEEEEEEETTTT-----------EE--EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTT
T ss_pred             CCCcceeEEEEeCCCC-----------ce--eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccc
Confidence            3567899999998876           11  112234433  7999999999 6665 88999999988 6554322222


Q ss_pred             eeeeeeeeeeecCCce-EEee--CCCeEEE--EEcCCCceeeeEeeCcccceEEEEEeCCCCEEE-EeeCCCcEEEEeC-
Q 021744          107 VIKTDILCRNWVQGNC-MYGE--KCKFLHS--WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDETVRVWDC-  179 (308)
Q Consensus       107 ~~~~~~~~~~~~~~~~-~~g~--~d~~i~i--wd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~dg~v~~wd~-  179 (308)
                      +...+..+.|+|++.. ++++  .++...|  +++.++ + ...+..+ ..+..++|+|++++|+ +++.++.+++|++ 
T Consensus        83 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~-~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~  159 (297)
T 2ojh_A           83 ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGG-T-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMD  159 (297)
T ss_dssp             CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCC-C-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCC-c-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEE
Confidence            2345788999999976 5555  3344444  555554 2 4445444 3588999999999876 7889999999985 


Q ss_pred             -CCCeEEEEEeCCCeeEEE--EcCCCEEEE-Ec-CCcEEEEEcC--CCceeeeeCCCCCEEEEEEeCC--EEEEEcCC--
Q 021744          180 -ASGQCAGVINLGGEVGCM--ISEGPWIFI-GV-TNFVKAWNTQ--TNTDLSLSGPVGQVYAMAVGND--LLFAGTQD--  248 (308)
Q Consensus       180 -~~~~~~~~~~~~~~v~~~--~~~~~~l~~-~~-d~~i~~wd~~--~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~d--  248 (308)
                       .+++......+...+.++  .+++++|+. +. ++.+++|++.  .++...+..+...+.+++|+|+  +|++++.+  
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  239 (297)
T 2ojh_A          160 IDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDAD  239 (297)
T ss_dssp             TTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETT
T ss_pred             CCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCC
Confidence             445443333355555554  578887774 43 7888888875  4444477777888999999999  77776655  


Q ss_pred             ---------CeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          249 ---------GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       249 ---------g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                               +.|++||+.+++.  ..+..+..|...+.. +|+|++++|+.++
T Consensus       240 ~~~~~~~~~~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~~spdg~~l~~~~  290 (297)
T 2ojh_A          240 VFDHPRDLDVRVQLMDMDGGNV--ETLFDLFGGQGTMNSPNWSPDGDEFAYVR  290 (297)
T ss_dssp             CCSCCSSEEEEEEEEETTSCSC--EEEEEEEESTTTSCSCCBCTTSSEEEEEE
T ss_pred             CCcccccCceEEEEEecCCCCc--eeeeccCCCCcccccceECCCCCEEEEEE
Confidence                     5699999988642  345555578888888 9999999888554

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=6.8e-22  Score=178.21  Aligned_cols=249  Identities=9%  Similarity=0.001  Sum_probs=181.9

Q ss_pred             CCCceEEecCCCeEEEeec--CCCCCCCCCcccccCCCCCCccccccc-eeEEec----CCCe-eecc-CCCcEEEEECC
Q 021744           25 GGGLSTADTRQKVCNYWRA--GKCNRFPCPYLHRELPLPPAATANGAA-AKRFAN----NTWG-RNNN-FNNHSNNYRAG   95 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~--~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~----~g~~-~s~~-~d~~i~vwd~~   95 (308)
                      .+.++++++.|++|++||.  .++.     .+       ..+..+... .++|+|    +|++ ++++ .+++|.+||..
T Consensus       189 dg~~l~v~~~d~~V~v~D~~~~t~~-----~~-------~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~  256 (543)
T 1nir_A          189 SGRYLLVIGRDARIDMIDLWAKEPT-----KV-------AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE  256 (543)
T ss_dssp             TSCEEEEEETTSEEEEEETTSSSCE-----EE-------EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred             CCCEEEEECCCCeEEEEECcCCCCc-----EE-------EEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc
Confidence            4678999999999999999  5440     01       111122223 799999    9999 7776 58999999998


Q ss_pred             CCCCcccccc-e--------eee-eeeeeeeecCCce--EEeeCCCeEEEEEcCCCceee-eEeeCcccceEEEEEeCCC
Q 021744           96 NSKNSNINNR-A--------VIK-TDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLL-TQLEGHQKVVSGITLPSGS  162 (308)
Q Consensus        96 ~~~~~~~~~~-~--------~~~-~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~-~~~~~h~~~v~~~~~~~~~  162 (308)
                      +.+.+..... .        |.. .+..+.+++++..  ++...++.|.+||..+..... ..+. +...+..++|+|++
T Consensus       257 t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg  335 (543)
T 1nir_A          257 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSH  335 (543)
T ss_dssp             TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTS
T ss_pred             ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCC
Confidence            8776533221 1        222 4677888887744  667789999999998763222 2333 56778899999999


Q ss_pred             CEEEEe-eCCCcEEEEeCCCCeEEEEEe-----CCCeeEEE-EcC-CCEEEEEc--CCcEEEEEcCC-------Ccee-e
Q 021744          163 DKLYSG-SKDETVRVWDCASGQCAGVIN-----LGGEVGCM-ISE-GPWIFIGV--TNFVKAWNTQT-------NTDL-S  224 (308)
Q Consensus       163 ~~l~s~-s~dg~v~~wd~~~~~~~~~~~-----~~~~v~~~-~~~-~~~l~~~~--d~~i~~wd~~~-------~~~~-~  224 (308)
                      ++++++ ..+++|.+||+.+++++..+.     |......+ .++ +.+++++.  +++|.+||+.+       .+.+ +
T Consensus       336 ~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~  415 (543)
T 1nir_A          336 RYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAE  415 (543)
T ss_dssp             CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred             CEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEE
Confidence            987655 568999999999999998887     22223333 466 55556653  78999999998       6666 7


Q ss_pred             eeCCCCCEEEEEEeCC--EEEEEc-------CCCeEEEEEcCCCCcccccc-eec--------cccCCCeEE-EEecCCC
Q 021744          225 LSGPVGQVYAMAVGND--LLFAGT-------QDGAILAWKFNVTTNCFEPA-ASL--------KVHTDSNRA-HFSRDVT  285 (308)
Q Consensus       225 ~~~~~~~v~~~~~~~~--~l~~g~-------~dg~i~iwd~~~~~~~~~~~-~~~--------~~~~~~v~~-~~s~d~~  285 (308)
                      +..|...+..++++|+  +|++++       .++.|.+||+.+.+    .. ..+        ..+...+.. .|+|||+
T Consensus       416 l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~  491 (543)
T 1nir_A          416 LQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD----AKYQVLPIAEWADLGEGAKRVVQPEYNKRGD  491 (543)
T ss_dssp             EECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT----SCCEEECHHHHHCCCSSCCEEEEEEECSSSS
T ss_pred             EEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC----CCeEEeechhhcccCCCCCceEeccCCCCCC
Confidence            8888888899999999  788776       27799999999874    33 222        355677888 9999999


Q ss_pred             eEEEe
Q 021744          286 SLLGS  290 (308)
Q Consensus       286 ~l~~s  290 (308)
                      .|+.|
T Consensus       492 ~~~~s  496 (543)
T 1nir_A          492 EVWFS  496 (543)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99865

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=8e-22  Score=166.68  Aligned_cols=251  Identities=9%  Similarity=-0.038  Sum_probs=178.0

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccc--cc-eeEEecCCCe--eeccCCCcEEEEECCCCCCcc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANG--AA-AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~--~~-~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .++++++.+++|++||..++..           ......++.  .. .++|+|+|+.  +++..++.|.+||+.+++...
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~-----------~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~   70 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAV-----------DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG   70 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE-----------EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcE-----------EEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEe
Confidence            3689999999999999887611           110011111  12 6899999976  677778999999998876543


Q ss_pred             cccce----eeeeeeeeeeecCCce-EEee------------CCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCE
Q 021744          102 INNRA----VIKTDILCRNWVQGNC-MYGE------------KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDK  164 (308)
Q Consensus       102 ~~~~~----~~~~~~~~~~~~~~~~-~~g~------------~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (308)
                      .....    +...+..+.+++++.. +++.            .++.|.+||+.++ +.+..+.. ...+..++|+|++++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~  148 (337)
T 1pby_B           71 RIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL-SRRKAFEA-PRQITMLAWARDGSK  148 (337)
T ss_dssp             EEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT-EEEEEEEC-CSSCCCEEECTTSSC
T ss_pred             eEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC-cEEEEEeC-CCCcceeEECCCCCE
Confidence            22211    2235677899999965 4443            5799999999988 66666664 456788999999998


Q ss_pred             EEEeeCCCcEEEEeCCCCeEEEEEeCCC--eeEEEEcCCCEEEEEc--CC-----------------------cEEEEEc
Q 021744          165 LYSGSKDETVRVWDCASGQCAGVINLGG--EVGCMISEGPWIFIGV--TN-----------------------FVKAWNT  217 (308)
Q Consensus       165 l~s~s~dg~v~~wd~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~--d~-----------------------~i~~wd~  217 (308)
                      |+++  ++.|.+||+.+++.+..+....  ....+.++++.+++..  ++                       .|.+||+
T Consensus       149 l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  226 (337)
T 1pby_B          149 LYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL  226 (337)
T ss_dssp             EEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred             EEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence            8877  6899999999999888777332  2224456666554332  22                       4789999


Q ss_pred             CCCcee--eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-
Q 021744          218 QTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-  291 (308)
Q Consensus       218 ~~~~~~--~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-  291 (308)
                      .+++..  .+..+...+.+++|+|+  +++++  ++.|++||+.++    +.+..+..+. .+.. +|+|||++|+++. 
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~----~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~  299 (337)
T 1pby_B          227 ETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN----ASIKRVPLPH-SYYSVNVSTDGSTVWLGGA  299 (337)
T ss_dssp             TTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT----EEEEEEECSS-CCCEEEECTTSCEEEEESB
T ss_pred             CCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC----cCcceecCCC-ceeeEEECCCCCEEEEEcC
Confidence            998775  44556678899999999  66666  799999999886    5555555443 3455 9999999887554 


Q ss_pred             ceEEEEee
Q 021744          292 SFIMFIGQ  299 (308)
Q Consensus       292 s~~i~~~~  299 (308)
                      +..|.++.
T Consensus       300 ~~~i~v~d  307 (337)
T 1pby_B          300 LGDLAAYD  307 (337)
T ss_dssp             SSEEEEEE
T ss_pred             CCcEEEEE
Confidence            45555554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=2e-21  Score=164.30  Aligned_cols=264  Identities=10%  Similarity=0.079  Sum_probs=173.1

Q ss_pred             CCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe--eeccCCCcEEEEECCCCCCcc
Q 021744           24 GGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG--RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        24 ~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      +++..+++++.+++|++||..++..     ... .+.     +.....++|+|+|++  +++..++.|.+||+.+++...
T Consensus         8 ~~~~~~v~~~~~~~v~~~d~~~~~~-----~~~-~~~-----~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~   76 (331)
T 3u4y_A            8 TSNFGIVVEQHLRRISFFSTDTLEI-----LNQ-ITL-----GYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKV   76 (331)
T ss_dssp             CCCEEEEEEGGGTEEEEEETTTCCE-----EEE-EEC-----CCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEE
T ss_pred             CCCEEEEEecCCCeEEEEeCcccce-----eee-EEc-----cCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeE
Confidence            3456789999999999999887611     000 010     111116899999996  555568999999998876521


Q ss_pred             cccceeeeeeee-eeeecCCceEEeeCCC----eEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEE-EeeCCCc-E
Q 021744          102 INNRAVIKTDIL-CRNWVQGNCMYGEKCK----FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDET-V  174 (308)
Q Consensus       102 ~~~~~~~~~~~~-~~~~~~~~~~~g~~d~----~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~dg~-v  174 (308)
                      .... ....... +.++|++..+..+.+.    .|.+||+.++ +.+..+..+ ..+.+++|+|++++++ +...++. |
T Consensus        77 ~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i  153 (331)
T 3u4y_A           77 VAIQ-EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN-KFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTV  153 (331)
T ss_dssp             EEEE-ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT-EEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEE
T ss_pred             Eecc-cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC-CeEEEEECC-CCccceEECCCCCEEEEEecCCCceE
Confidence            1222 2223444 8899999874344333    9999999988 677777643 4568999999998654 4456688 9


Q ss_pred             EEEeCCCCeEE-----EEEeCCCeeE--EEEcCCCEEEE-Ec-CCcEEEEEcCCCce---e-eeeCCCCCEEEEEEeCC-
Q 021744          175 RVWDCASGQCA-----GVINLGGEVG--CMISEGPWIFI-GV-TNFVKAWNTQTNTD---L-SLSGPVGQVYAMAVGND-  240 (308)
Q Consensus       175 ~~wd~~~~~~~-----~~~~~~~~v~--~~~~~~~~l~~-~~-d~~i~~wd~~~~~~---~-~~~~~~~~v~~~~~~~~-  240 (308)
                      .+|++.....+     ..+.......  .+.++++++++ +. ++.|.+||+.+++.   . .+. ....+..++|+|+ 
T Consensus       154 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg  232 (331)
T 3u4y_A          154 RRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSRDG  232 (331)
T ss_dssp             EEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTS
T ss_pred             EEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECCCC
Confidence            99998864332     2222223333  33588886664 44 78999999998886   5 444 3466788999999 


Q ss_pred             -EEE-EEcCCCeEEEEEcCCCCcccccceecccc----CCC---eEE-EEecCCCeEEEee--ceEEEEeecCcee
Q 021744          241 -LLF-AGTQDGAILAWKFNVTTNCFEPAASLKVH----TDS---NRA-HFSRDVTSLLGSV--SFIMFIGQNNKGV  304 (308)
Q Consensus       241 -~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~---v~~-~~s~d~~~l~~s~--s~~i~~~~~~~~~  304 (308)
                       +++ +...++.|.+||+.+++.  +.+..+..+    ...   ... +|+||+++|+++.  +..+.++.-....
T Consensus       233 ~~l~v~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          233 STVYVLTESTVDVFNFNQLSGTL--SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             SEEEEECSSEEEEEEEETTTTEE--EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             CEEEEEEcCCCEEEEEECCCCce--eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence             454 445678899999988632  123322211    222   234 9999999887555  4456555544333

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=1.2e-20  Score=160.57  Aligned_cols=238  Identities=16%  Similarity=0.057  Sum_probs=172.2

Q ss_pred             CCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceee----
Q 021744           35 QKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVI----  108 (308)
Q Consensus        35 d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~----  108 (308)
                      ++.|.+||..++..           ......+.....++++|+|+.  ++...++.|.+||.++++..........    
T Consensus        68 ~~~v~~~d~~~~~~-----------~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~  136 (353)
T 3vgz_A           68 GGVVYRLDPVTLEV-----------TQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTE  136 (353)
T ss_dssp             SEEEEEECTTTCCE-----------EEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCS
T ss_pred             CccEEEEcCCCCeE-----------EEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcccc
Confidence            67999999887611           000000111116899999996  6777789999999988765432221111    


Q ss_pred             ----eeeeeeeeecCCce-EEe--eCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744          109 ----KTDILCRNWVQGNC-MYG--EKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       109 ----~~~~~~~~~~~~~~-~~g--~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~  181 (308)
                          ..+..+.+++++.. +.+  +.++.|.+||+.++ +.+..+..+...+..++|+|+++++++++.++.|.+||+.+
T Consensus       137 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~  215 (353)
T 3vgz_A          137 EVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI-KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTAD  215 (353)
T ss_dssp             SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT-EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTT
T ss_pred             ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC-ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCC
Confidence                12567899999875 333  35889999999998 77777775666788999999999999999999999999999


Q ss_pred             CeEEEEEeC-----CCeeE--EEEcCCCEEEEEc--CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC---EEEEEcCC
Q 021744          182 GQCAGVINL-----GGEVG--CMISEGPWIFIGV--TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQD  248 (308)
Q Consensus       182 ~~~~~~~~~-----~~~v~--~~~~~~~~l~~~~--d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~---~l~~g~~d  248 (308)
                      ++.+..+..     .....  ++.+++++++++.  ++.|.+||+.+++.. .+....  ...++|+|+   ++++...+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~  293 (353)
T 3vgz_A          216 NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQA  293 (353)
T ss_dssp             TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTT
T ss_pred             CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCC
Confidence            999888773     22232  4468898777554  589999999998877 444322  256899998   45555579


Q ss_pred             CeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      +.|.+||..++    +.+..+.... .+.. +|+|||++|+++.
T Consensus       294 ~~v~~~d~~~~----~~~~~~~~~~-~~~~~~~s~dg~~l~v~~  332 (353)
T 3vgz_A          294 GKVSVIDAKSY----KVVKTFDTPT-HPNSLALSADGKTLYVSV  332 (353)
T ss_dssp             TEEEEEETTTT----EEEEEEECCS-EEEEEEECTTSCEEEEEE
T ss_pred             CeEEEEECCCC----eEEEEEecCC-CCCeEEEcCCCCEEEEEE
Confidence            99999999886    5566665444 4556 9999999777554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=4.9e-21  Score=162.22  Aligned_cols=253  Identities=9%  Similarity=0.114  Sum_probs=164.2

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCC-CcEEEEECC--CCCCc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFN-NHSNNYRAG--NSKNS  100 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d-~~i~vwd~~--~~~~~  100 (308)
                      .++++++.|+.|++|+.......  ..+.        ...|...  .++|+|+|++ ++++.+ +.|++|+++  +++..
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~~--~~~~--------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~   75 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGAL--TLTQ--------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT   75 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCE--EEEE--------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EEEEeCCCCCeEEEEEECCCCcE--EEee--------eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee
Confidence            35666688999999998532100  0000        0111112  6999999998 666665 999999997  44322


Q ss_pred             ccccceeeeeeeeeeeecCCce-EE-eeCCCeEEEEEcCCCc--eeeeEeeCcccceEEEEEeCCCCEEEEee-CCCcEE
Q 021744          101 NINNRAVIKTDILCRNWVQGNC-MY-GEKCKFLHSWTVGDGF--KLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVR  175 (308)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~-~~-g~~d~~i~iwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~dg~v~  175 (308)
                      ..........+..+.++|++.. ++ +..++.|.+||+.++.  +.+..+..+ ..+.+++|+|+++++++++ .++.|.
T Consensus        76 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~  154 (343)
T 1ri6_A           76 FAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRIC  154 (343)
T ss_dssp             EEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred             eccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEE
Confidence            1111111225778899999975 34 4458999999994221  344455443 4688999999999888777 899999


Q ss_pred             EEeCCC-CeEEE----EEe--CCCeeEE--EEcCCCEEEE-Ec-CCcEEEEEcCC--Ccee---eee---CC---CCCEE
Q 021744          176 VWDCAS-GQCAG----VIN--LGGEVGC--MISEGPWIFI-GV-TNFVKAWNTQT--NTDL---SLS---GP---VGQVY  233 (308)
Q Consensus       176 ~wd~~~-~~~~~----~~~--~~~~v~~--~~~~~~~l~~-~~-d~~i~~wd~~~--~~~~---~~~---~~---~~~v~  233 (308)
                      +||+.+ ++...    .+.  ....+..  +.++++++++ +. ++.|.+||+..  ++..   ...   ..   ...+.
T Consensus       155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  234 (343)
T 1ri6_A          155 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAA  234 (343)
T ss_dssp             EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEE
T ss_pred             EEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCcc
Confidence            999987 65433    222  2223333  3578887764 43 88999999954  4322   121   11   23677


Q ss_pred             EEEEeCC--EEE-EEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          234 AMAVGND--LLF-AGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       234 ~~~~~~~--~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      .++|+|+  +|+ ++..++.|.+||+.......+.+..+..+.. +.. +|+|++++|+++.
T Consensus       235 ~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~  295 (343)
T 1ri6_A          235 DIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAG  295 (343)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEEC
T ss_pred             ceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEec
Confidence            8999998  444 6668999999999842211245555555555 555 9999999888665

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.86  E-value=6.6e-20  Score=171.50  Aligned_cols=267  Identities=9%  Similarity=-0.056  Sum_probs=179.6

Q ss_pred             CCCceEEecC-CC-----eEEEeecCCCCCCCCCcccccCC----------CC---CCccccccc-eeEEecCCCe-eec
Q 021744           25 GGGLSTADTR-QK-----VCNYWRAGKCNRFPCPYLHRELP----------LP---PAATANGAA-AKRFANNTWG-RNN   83 (308)
Q Consensus        25 ~~~~~~s~s~-d~-----~i~~W~~~~~~~~~~~~~~~~~~----------~~---~~~~gh~~~-~i~~s~~g~~-~s~   83 (308)
                      .|..|++++. |+     +|++||..+++.......+...|          ..   ....+.... .++|+|||+. +++
T Consensus        47 dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~  126 (741)
T 2ecf_A           47 DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFP  126 (741)
T ss_dssp             TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEE
T ss_pred             CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEE
Confidence            3567888887 88     99999988763211000000000          00   000000112 6899999998 666


Q ss_pred             cCCCcEEEEECCCC---CCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccc--------
Q 021744           84 NFNNHSNNYRAGNS---KNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV--------  152 (308)
Q Consensus        84 ~~d~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~--------  152 (308)
                      +. ++|++||+.++   +..  ....+...+..+.|+|+|..+.-..++.|++||+.++ +.......+...        
T Consensus       127 ~~-~~i~~~d~~~~~~~~~~--~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~g~~~~  202 (741)
T 2ecf_A          127 LG-GELYLYDLKQEGKAAVR--QLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASG-RQMQLTADGSTTIGNGIAEF  202 (741)
T ss_dssp             ET-TEEEEEESSSCSTTSCC--BCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTT-EEEECCCCCCSSEEESCCCH
T ss_pred             eC-CcEEEEECCCCCcceEE--EcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCC-CEEEeccCCccceeccccce
Confidence            65 89999999877   332  3344455688899999998744444679999999987 454444433332        


Q ss_pred             --------eEEEEEeCCCCEEEEeeCCC---------------------------------cEEEEeCCC-CeEEEEEe-
Q 021744          153 --------VSGITLPSGSDKLYSGSKDE---------------------------------TVRVWDCAS-GQCAGVIN-  189 (308)
Q Consensus       153 --------v~~~~~~~~~~~l~s~s~dg---------------------------------~v~~wd~~~-~~~~~~~~-  189 (308)
                              +..++|+||+++|++++.|+                                 .|.+||+.+ ++...... 
T Consensus       203 v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~  282 (741)
T 2ecf_A          203 VADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLG  282 (741)
T ss_dssp             HHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCC
T ss_pred             eeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCC
Confidence                    47899999999999988776                                 889999998 77654432 


Q ss_pred             --CCCeeE--EEEcCCCEEEEEc------CCcEEEEEcCCCceee-eeCCCC----CEEEEEEeCC--EEEEEcCCCeEE
Q 021744          190 --LGGEVG--CMISEGPWIFIGV------TNFVKAWNTQTNTDLS-LSGPVG----QVYAMAVGND--LLFAGTQDGAIL  252 (308)
Q Consensus       190 --~~~~v~--~~~~~~~~l~~~~------d~~i~~wd~~~~~~~~-~~~~~~----~v~~~~~~~~--~l~~g~~dg~i~  252 (308)
                        +...+.  ++ +++++|+++.      +..|.+||+.+++... +..+..    .+.+++|+||  ++++++.||.++
T Consensus       283 ~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~  361 (741)
T 2ecf_A          283 KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQH  361 (741)
T ss_dssp             SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCE
T ss_pred             CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccE
Confidence              233333  45 8899888542      3579999999998763 333332    4468899999  888889999888


Q ss_pred             EEEcCCCCcccccceeccccCCCeEE--EEecCCCeEEEee------ceEEEEeec
Q 021744          253 AWKFNVTTNCFEPAASLKVHTDSNRA--HFSRDVTSLLGSV------SFIMFIGQN  300 (308)
Q Consensus       253 iwd~~~~~~~~~~~~~~~~~~~~v~~--~~s~d~~~l~~s~------s~~i~~~~~  300 (308)
                      ||.+....   . ...+..+...+..  .|+||++.|+.++      ...||....
T Consensus       362 l~~~~~~~---~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          362 LYRIDSKG---K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             EEEECSSS---C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             EEEEcCCC---C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            88877431   4 5667777777765  5999999886443      345777653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=1.4e-19  Score=158.88  Aligned_cols=188  Identities=9%  Similarity=-0.064  Sum_probs=137.8

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCC--------cc--c----ccceeeeeeeeeeeecCCce-E----EeeCCCe
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKN--------SN--I----NNRAVIKTDILCRNWVQGNC-M----YGEKCKF  130 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~--------~~--~----~~~~~~~~~~~~~~~~~~~~-~----~g~~d~~  130 (308)
                      .+++++++.+ ++++.|+ +++|+......        ..  .    ....+...+..+.|++++.. +    +++.|+.
T Consensus        41 ~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~  119 (434)
T 2oit_A           41 LLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSI  119 (434)
T ss_dssp             CEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEE
T ss_pred             EEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCce
Confidence            6899999999 8888887 99987631100        00  0    00112334889999999976 4    6888999


Q ss_pred             EEEEEcCCC-----c-----eeeeEeeCcccceEEEEEeCC-CCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE-
Q 021744          131 LHSWTVGDG-----F-----KLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM-  197 (308)
Q Consensus       131 i~iwd~~~~-----~-----~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~-  197 (308)
                      |++||+.+.     .     ..+..+.+|...|.+++|+|+ +.+|++++.||+|++||+++++.+.... +...+.++ 
T Consensus       120 v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~  199 (434)
T 2oit_A          120 IAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVC  199 (434)
T ss_dssp             EEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEE
T ss_pred             EEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEE
Confidence            999998653     1     124566789999999999998 7899999999999999999987665444 56677766 


Q ss_pred             -EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCC-------CCCEEEEEEeCC--EE-EEEcCCC------eEEEEEcCCC
Q 021744          198 -ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGP-------VGQVYAMAVGND--LL-FAGTQDG------AILAWKFNVT  259 (308)
Q Consensus       198 -~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~-------~~~v~~~~~~~~--~l-~~g~~dg------~i~iwd~~~~  259 (308)
                       .+++++|++|+ |+.|++||++......+..|       ...+.+++|+++  ++ +..+.||      .+++|+++..
T Consensus       200 wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          200 WSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             ECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence             47899999877 99999999983322244333       237999999998  33 2344443      3899999865

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=1.9e-19  Score=152.94  Aligned_cols=231  Identities=12%  Similarity=0.083  Sum_probs=160.2

Q ss_pred             CCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe--eeccCCCcEEEEECCCCCCc
Q 021744           23 GGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG--RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        23 ~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~  100 (308)
                      +..+.++++++.+++|++||..++..     +. ..+....   .....++|+|+|+.  ++...+++|.+||+.+++..
T Consensus         8 ~~~~~~~v~~~~~~~v~~~d~~~~~~-----~~-~~~~~~~---~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~   78 (349)
T 1jmx_B            8 KAGHEYMIVTNYPNNLHVVDVASDTV-----YK-SCVMPDK---FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT   78 (349)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEE-----EE-EEECSSC---CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cCCCEEEEEeCCCCeEEEEECCCCcE-----EE-EEecCCC---CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE
Confidence            44567899999999999999887611     10 0111100   01116899999986  66778899999999877654


Q ss_pred             cccccee-----eeeeeeeeeecCCce-EEeeCC------------CeEEEEEcCCCc--eeeeEeeCcccceEEEEEeC
Q 021744          101 NINNRAV-----IKTDILCRNWVQGNC-MYGEKC------------KFLHSWTVGDGF--KLLTQLEGHQKVVSGITLPS  160 (308)
Q Consensus       101 ~~~~~~~-----~~~~~~~~~~~~~~~-~~g~~d------------~~i~iwd~~~~~--~~~~~~~~h~~~v~~~~~~~  160 (308)
                      ......+     ...+..+.++|++.. ++++.+            +.|.+||+.++.  +.+..+. +...+.+++|+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~  157 (349)
T 1jmx_B           79 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAAD  157 (349)
T ss_dssp             EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECT
T ss_pred             EEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECC
Confidence            3222111     233678899999976 555544            899999998752  2233444 344688999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCC-------------------------e----------------------
Q 021744          161 GSDKLYSGSKDETVRVWDCASGQCAGVINLGG-------------------------E----------------------  193 (308)
Q Consensus       161 ~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~-------------------------~----------------------  193 (308)
                      +++ ++.++.  .|.+||+.+++.+..+....                         .                      
T Consensus       158 dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  234 (349)
T 1jmx_B          158 DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG  234 (349)
T ss_dssp             TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred             CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence            999 555544  49999999998877765321                         0                      


Q ss_pred             ----------------------eE--EEEc-CCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEc
Q 021744          194 ----------------------VG--CMIS-EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT  246 (308)
Q Consensus       194 ----------------------v~--~~~~-~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~  246 (308)
                                            ..  ++.+ ++++++++ ++.|.+||+.+++..........+.+++|+|+  +|++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  313 (349)
T 1jmx_B          235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG  313 (349)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEES
T ss_pred             EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEec
Confidence                                  00  1136 88888887 88999999999987733223445778999998  677788


Q ss_pred             CCCeEEEEEcCCCCcccccceeccc
Q 021744          247 QDGAILAWKFNVTTNCFEPAASLKV  271 (308)
Q Consensus       247 ~dg~i~iwd~~~~~~~~~~~~~~~~  271 (308)
                      .++.|++||+.+.    +.+..+..
T Consensus       314 ~~~~v~v~d~~~~----~~~~~~~~  334 (349)
T 1jmx_B          314 TFNDLAVFNPDTL----EKVKNIKL  334 (349)
T ss_dssp             BSSEEEEEETTTT----EEEEEEEC
T ss_pred             CCCeEEEEecccc----ceeeeeec
Confidence            8899999999886    55555543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.85  E-value=7.5e-19  Score=163.52  Aligned_cols=246  Identities=11%  Similarity=0.077  Sum_probs=165.4

Q ss_pred             CCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCC-----CCCcccccc
Q 021744           34 RQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGN-----SKNSNINNR  105 (308)
Q Consensus        34 ~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~-----~~~~~~~~~  105 (308)
                      .|++|++||..++.   ..          .+..+...  .++|+|||+. +. ..|++|++||+.+     ++.......
T Consensus        99 ~~~~i~~~d~~~~~---~~----------~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~  164 (706)
T 2z3z_A           99 TQGGLVGFDMLARK---VT----------YLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTID  164 (706)
T ss_dssp             ETTEEEEEETTTTE---EE----------EEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSC
T ss_pred             ECCEEEEEECCCCc---eE----------EccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccC
Confidence            46999999987761   00          01111111  6899999999 66 4789999999987     654322111


Q ss_pred             eeee-------------eeeeeeeecCCce-EEee---------------------------------CCCeEEEEEcCC
Q 021744          106 AVIK-------------TDILCRNWVQGNC-MYGE---------------------------------KCKFLHSWTVGD  138 (308)
Q Consensus       106 ~~~~-------------~~~~~~~~~~~~~-~~g~---------------------------------~d~~i~iwd~~~  138 (308)
                      ....             .+..+.|+|+|.. ++++                                 .+..|++||+.+
T Consensus       165 ~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~  244 (706)
T 2z3z_A          165 GTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT  244 (706)
T ss_dssp             CBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT
T ss_pred             CCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC
Confidence            1111             1478889999976 5554                                 457899999998


Q ss_pred             CceeeeEe--eCcccceEEEEEeCCCCEEEEeeCCC-----cEEEEeCCCCeEEEEEe---CCCe-----eEEEEc--CC
Q 021744          139 GFKLLTQL--EGHQKVVSGITLPSGSDKLYSGSKDE-----TVRVWDCASGQCAGVIN---LGGE-----VGCMIS--EG  201 (308)
Q Consensus       139 ~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~s~dg-----~v~~wd~~~~~~~~~~~---~~~~-----v~~~~~--~~  201 (308)
                      + +.....  ..|...+..++|+||++.|++++.++     .|++||+.+++....+.   ....     ...+++  ++
T Consensus       245 ~-~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg  323 (706)
T 2z3z_A          245 G-KTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNN  323 (706)
T ss_dssp             T-EEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSS
T ss_pred             C-ceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCC
Confidence            8 443333  24677899999999999999888776     99999999984333332   2211     124567  88


Q ss_pred             CEEEEEc-CCcEEEEEcC-CCc-eeeeeCCCCCEEE-EEEeCC--EE-EEEcCCC----eEEEEEcCCCCcccccceecc
Q 021744          202 PWIFIGV-TNFVKAWNTQ-TNT-DLSLSGPVGQVYA-MAVGND--LL-FAGTQDG----AILAWKFNVTTNCFEPAASLK  270 (308)
Q Consensus       202 ~~l~~~~-d~~i~~wd~~-~~~-~~~~~~~~~~v~~-~~~~~~--~l-~~g~~dg----~i~iwd~~~~~~~~~~~~~~~  270 (308)
                      ++++++. ++.+++|++. ++. ...+..+...+.+ ++|+|+  .| ++++.++    .|..||+.++    + ...+.
T Consensus       324 ~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~----~-~~~l~  398 (706)
T 2z3z_A          324 QFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG----K-TKDLT  398 (706)
T ss_dssp             EEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC----C-CEESC
T ss_pred             EEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC----C-ceecc
Confidence            8888776 7888888765 333 4467777777877 799998  44 5555555    6667777664    2 33333


Q ss_pred             ccCCCeEE-EEecCCCeEEEeec-----eEEEEeec
Q 021744          271 VHTDSNRA-HFSRDVTSLLGSVS-----FIMFIGQN  300 (308)
Q Consensus       271 ~~~~~v~~-~~s~d~~~l~~s~s-----~~i~~~~~  300 (308)
                       +...+.. +|+|||++++.+++     ..++++..
T Consensus       399 -~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~  433 (706)
T 2z3z_A          399 -PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI  433 (706)
T ss_dssp             -CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred             -CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence             5566777 99999999885541     34666653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.85  E-value=8.5e-20  Score=169.89  Aligned_cols=266  Identities=9%  Similarity=-0.021  Sum_probs=172.3

Q ss_pred             CCceEEecCCCeEEEeecCCCCCC-CCCcccccC--CCCCC---cc-ccccc-eeEEecCCCeeeccCCCcEEEEECCCC
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRF-PCPYLHREL--PLPPA---AT-ANGAA-AKRFANNTWGRNNNFNNHSNNYRAGNS   97 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~-~~~~~~~~~--~~~~~---~~-gh~~~-~i~~s~~g~~~s~~~d~~i~vwd~~~~   97 (308)
                      +..+++.+.|+ | +||..++... ...+.+...  .+...   .+ .+... .++|+|+ ..+..+.|++|++||+.++
T Consensus        35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~  111 (706)
T 2z3z_A           35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFTQGGLVGFDMLAR  111 (706)
T ss_dssp             TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEETTEEEEEETTTT
T ss_pred             CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEECCEEEEEECCCC
Confidence            45677777787 8 9999887321 000101000  00000   00 01122 7899999 5522235699999999877


Q ss_pred             CCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCC-----CceeeeEeeCcccc--------------eEEEEE
Q 021744           98 KNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGD-----GFKLLTQLEGHQKV--------------VSGITL  158 (308)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~-----~~~~~~~~~~h~~~--------------v~~~~~  158 (308)
                      +..  ....+...+..+.|+|+|..+.-..++.|++|++.+     + +.......+...              +.+++|
T Consensus       112 ~~~--~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g-~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~  188 (706)
T 2z3z_A          112 KVT--YLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMS-RAIAVTIDGTETLVYGQAVHQREFGIEKGTFW  188 (706)
T ss_dssp             EEE--EEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCC-CCEESCSCCBTTEEESSCCGGGCTTCCCSEEE
T ss_pred             ceE--EccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCC-CcEEeccCCCCCeEcccchhhhhcCCCceEEE
Confidence            543  222233447788999999874446789999999998     7 444433433333              489999


Q ss_pred             eCCCCEEEEee---------------------------------CCCcEEEEeCCCCeEEEEEe---CCCeeEEE--EcC
Q 021744          159 PSGSDKLYSGS---------------------------------KDETVRVWDCASGQCAGVIN---LGGEVGCM--ISE  200 (308)
Q Consensus       159 ~~~~~~l~s~s---------------------------------~dg~v~~wd~~~~~~~~~~~---~~~~v~~~--~~~  200 (308)
                      +||+++|++++                                 .+..|++||+.+++......   +...+..+  +++
T Consensus       189 SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd  268 (706)
T 2z3z_A          189 SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPD  268 (706)
T ss_dssp             CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTT
T ss_pred             CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECC
Confidence            99999999987                                 44689999999988655442   33444444  588


Q ss_pred             CCEEEEEc-CC-----cEEEEEcCCC-ceeeee--CCCC---CEEEEEEeC--C--EEEEEcCCCeEEEEEcCCCCcccc
Q 021744          201 GPWIFIGV-TN-----FVKAWNTQTN-TDLSLS--GPVG---QVYAMAVGN--D--LLFAGTQDGAILAWKFNVTTNCFE  264 (308)
Q Consensus       201 ~~~l~~~~-d~-----~i~~wd~~~~-~~~~~~--~~~~---~v~~~~~~~--~--~l~~g~~dg~i~iwd~~~~~~~~~  264 (308)
                      +++|+++. ++     .|.+||+.++ +...+.  .+..   .+.+++|+|  +  +++++..|+.+++|++....   .
T Consensus       269 g~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~---~  345 (706)
T 2z3z_A          269 ENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG---R  345 (706)
T ss_dssp             SSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS---C
T ss_pred             CCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC---C
Confidence            99888654 54     8999999998 444332  2222   246789999  8  88888899999999887321   4


Q ss_pred             cceeccccCCCeEE--EEecCCCeEEEee--c----eEEEEeec
Q 021744          265 PAASLKVHTDSNRA--HFSRDVTSLLGSV--S----FIMFIGQN  300 (308)
Q Consensus       265 ~~~~~~~~~~~v~~--~~s~d~~~l~~s~--s----~~i~~~~~  300 (308)
                      .+..+..+...+..  +|+||++.|+.++  +    ..||.+..
T Consensus       346 ~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  389 (706)
T 2z3z_A          346 LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI  389 (706)
T ss_dssp             EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET
T ss_pred             EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc
Confidence            55667777766753  8999999887554  2    47887764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.85  E-value=2e-19  Score=167.77  Aligned_cols=258  Identities=5%  Similarity=-0.062  Sum_probs=167.1

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCcccccc----c-eeEEecCCCe-eeccCC---------CcEE
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGA----A-AKRFANNTWG-RNNNFN---------NHSN   90 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~----~-~i~~s~~g~~-~s~~~d---------~~i~   90 (308)
                      |.++++ +.|++|++||..++..   .         ....+|..    . .++|||||++ ++++.+         +.|.
T Consensus        28 g~~~~~-~~dg~i~~~d~~~g~~---~---------~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~   94 (723)
T 1xfd_A           28 TEFIYR-EQKGTVRLWNVETNTS---T---------VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV   94 (723)
T ss_dssp             SCBCCC-CSSSCEEEBCGGGCCC---E---------EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred             CcEEEE-eCCCCEEEEECCCCcE---E---------EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence            345655 7899999999987721   0         11111221    2 7899999998 777654         7788


Q ss_pred             EEECCCCCCccc-ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccce---------------
Q 021744           91 NYRAGNSKNSNI-NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVV---------------  153 (308)
Q Consensus        91 vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v---------------  153 (308)
                      +||+++++.... ....+...+..+.|+|+|.. ++++ ++.|++||+.++ +.......+...+               
T Consensus        95 ~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~g-~~~~~~~~~~~~~~~~g~~~~v~~ee~~  172 (723)
T 1xfd_A           95 LSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGK-QAIRVVSTGKEGVIYNGLSDWLYEEEIL  172 (723)
T ss_dssp             EEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSS-CCEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred             EEECCCCceEeccCCccccccccccEECCCCCEEEEEE-CCeEEEEECCCC-ceEEEecCCCCCceECcccceeEEEEec
Confidence            999988764211 11223334778999999976 4444 489999999987 4555444444333               


Q ss_pred             ---EEEEEeCCCCEEEEeeCCC----------------------------------cEEEEeCCCCeEEEEEeC------
Q 021744          154 ---SGITLPSGSDKLYSGSKDE----------------------------------TVRVWDCASGQCAGVINL------  190 (308)
Q Consensus       154 ---~~~~~~~~~~~l~s~s~dg----------------------------------~v~~wd~~~~~~~~~~~~------  190 (308)
                         .+++|+||+++|++++.|+                                  .|++||+.+++....+..      
T Consensus       173 ~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~  252 (723)
T 1xfd_A          173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM  252 (723)
T ss_dssp             SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred             cCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCC
Confidence               7899999999999887653                                  799999998876555542      


Q ss_pred             -CCeeEE--EEcCCCEEEEEc-----CCcEEEEEcCCCceeee-e-CCCCCE----EEEEEeCC--EEE-E-EcCCC---
Q 021744          191 -GGEVGC--MISEGPWIFIGV-----TNFVKAWNTQTNTDLSL-S-GPVGQV----YAMAVGND--LLF-A-GTQDG---  249 (308)
Q Consensus       191 -~~~v~~--~~~~~~~l~~~~-----d~~i~~wd~~~~~~~~~-~-~~~~~v----~~~~~~~~--~l~-~-g~~dg---  249 (308)
                       ...+..  ++|+++++++..     +..|++||+.+++...+ . .+...+    ..++|+||  .|+ . +..++   
T Consensus       253 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  332 (723)
T 1xfd_A          253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG  332 (723)
T ss_dssp             SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred             ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCc
Confidence             233443  358898887543     24799999999887632 2 233433    37899999  333 3 55677   


Q ss_pred             ---eEEEEEc-CCCCcccccceeccccCC-CeEE-EEecCCCeEEEee------ceEEEEeec
Q 021744          250 ---AILAWKF-NVTTNCFEPAASLKVHTD-SNRA-HFSRDVTSLLGSV------SFIMFIGQN  300 (308)
Q Consensus       250 ---~i~iwd~-~~~~~~~~~~~~~~~~~~-~v~~-~~s~d~~~l~~s~------s~~i~~~~~  300 (308)
                         .|.+||+ ..+..  .....+..+.. .... +|+|||+.|+.++      ...||....
T Consensus       333 ~~~~l~~~d~~~~~~~--~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~  393 (723)
T 1xfd_A          333 KFYHITVSSSQPNSSN--DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT  393 (723)
T ss_dssp             CEEEEEEECSSCCSSS--CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred             ceeEEEEEeccCCCCc--cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence               4666663 33210  01344443333 3444 8999999987443      256776653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.85  E-value=1.9e-18  Score=145.99  Aligned_cols=220  Identities=8%  Similarity=0.009  Sum_probs=156.1

Q ss_pred             EEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCcee-eeEee
Q 021744           73 RFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKL-LTQLE  147 (308)
Q Consensus        73 ~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~-~~~~~  147 (308)
                      .|.+++..  ++++.+++|++||+++++...... .....+ .+.++|++..  +++..++.|++||+.++ +. ...+.
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~-~~~~~~~~   80 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT-LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE-PPKVVAIQ   80 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE-CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS-SCEEEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE-ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC-ceeEEecc
Confidence            45566555  888999999999998886653322 223335 8899999974  44445889999999988 55 66777


Q ss_pred             CcccceEEEEEeCCCCEEEEeeCCC---cEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEEEE-c-CCc-EEEEEcCC
Q 021744          148 GHQKVVSGITLPSGSDKLYSGSKDE---TVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIG-V-TNF-VKAWNTQT  219 (308)
Q Consensus       148 ~h~~~v~~~~~~~~~~~l~s~s~dg---~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~-~-d~~-i~~wd~~~  219 (308)
                      .+..+..+++|+|+++++++...++   .|.+||+++++.+..+........+  .+++++++++ . ++. |.+|++..
T Consensus        81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A           81 EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence            6666666699999999998655553   8999999999998888855444443  5788766544 4 577 99999886


Q ss_pred             Ccee-----eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCccccc---ceeccccCCCeEE-EEecCCCeE
Q 021744          220 NTDL-----SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEP---AASLKVHTDSNRA-HFSRDVTSL  287 (308)
Q Consensus       220 ~~~~-----~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~v~~-~~s~d~~~l  287 (308)
                      ....     ........+..++|+|+   +++++..++.|++||+.++    +.   +..+..+ ..+.. +|+|||++|
T Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~----~~~~~~~~~~~~-~~~~~~~~spdg~~l  235 (331)
T 3u4y_A          161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP----ENITLLNAVGTN-NLPGTIVVSRDGSTV  235 (331)
T ss_dssp             TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST----TSCEEEEEEECS-SCCCCEEECTTSSEE
T ss_pred             CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC----cccceeeeccCC-CCCceEEECCCCCEE
Confidence            4332     12233456899999999   4455667899999999876    44   5556544 34445 999999977


Q ss_pred             EEee--ceEEEEeec
Q 021744          288 LGSV--SFIMFIGQN  300 (308)
Q Consensus       288 ~~s~--s~~i~~~~~  300 (308)
                      +++.  +..|+++..
T Consensus       236 ~v~~~~~~~i~~~d~  250 (331)
T 3u4y_A          236 YVLTESTVDVFNFNQ  250 (331)
T ss_dssp             EEECSSEEEEEEEET
T ss_pred             EEEEcCCCEEEEEEC
Confidence            6543  555666553

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.84  E-value=2.2e-18  Score=161.11  Aligned_cols=257  Identities=8%  Similarity=-0.018  Sum_probs=173.8

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      +..|++++. ++|++||..++.          .+....+..|...  .++|+|||+. +.++ ++.|++||+.+++....
T Consensus       120 g~~l~~~~~-~~i~~~d~~~~~----------~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          120 AQRLLFPLG-GELYLYDLKQEG----------KAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             SSEEEEEET-TEEEEEESSSCS----------TTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred             CCEEEEEeC-CcEEEEECCCCC----------cceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe
Confidence            566777765 999999987651          0011223333333  7899999998 6665 56899999987654322


Q ss_pred             ccceee---------------eeeeeeeeecCCce-EEeeCCC---------------------------------eEEE
Q 021744          103 NNRAVI---------------KTDILCRNWVQGNC-MYGEKCK---------------------------------FLHS  133 (308)
Q Consensus       103 ~~~~~~---------------~~~~~~~~~~~~~~-~~g~~d~---------------------------------~i~i  133 (308)
                      ......               ..+..+.|+|+|.. ++++.|+                                 .|++
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~  267 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV  267 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence            111111               01467899999975 6665554                                 7889


Q ss_pred             EEcCC-CceeeeEee--CcccceEEEEEeCCCCEEEEeeC-----CCcEEEEeCCCCeEEEEEeCCC-------eeEEEE
Q 021744          134 WTVGD-GFKLLTQLE--GHQKVVSGITLPSGSDKLYSGSK-----DETVRVWDCASGQCAGVINLGG-------EVGCMI  198 (308)
Q Consensus       134 wd~~~-~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~-----dg~v~~wd~~~~~~~~~~~~~~-------~v~~~~  198 (308)
                      ||+.+ + +......  .|...+..++| ||+++|+.++.     +..|++||+.+++....+....       ....++
T Consensus       268 ~d~~~~~-~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s  345 (741)
T 2ecf_A          268 ISPAEQA-QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL  345 (741)
T ss_dssp             ECSSTTC-CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred             EECCCCC-ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence            99988 7 4433332  47788999999 99999887654     5689999999998877665221       123456


Q ss_pred             cCCCEEEEEc-CCcEEEEEcC-CCceeeeeCCCCCEEEE-EEeCC--EE-EEEcCCC--eEEEEEcCCCCcccccceecc
Q 021744          199 SEGPWIFIGV-TNFVKAWNTQ-TNTDLSLSGPVGQVYAM-AVGND--LL-FAGTQDG--AILAWKFNVTTNCFEPAASLK  270 (308)
Q Consensus       199 ~~~~~l~~~~-d~~i~~wd~~-~~~~~~~~~~~~~v~~~-~~~~~--~l-~~g~~dg--~i~iwd~~~~~~~~~~~~~~~  270 (308)
                      +++++++++. ++.+++|.+. .++...+..+...+.++ .|+|+  .+ ++++.++  .+++|++....   ..+..+.
T Consensus       346 pdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g---~~~~~l~  422 (741)
T 2ecf_A          346 DDGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQG---GQPQRLS  422 (741)
T ss_dssp             TTSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTC---CCCEECC
T ss_pred             CCCeEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCC---CCeeecc
Confidence            8899777766 7767776654 23344677778888887 59998  44 5666666  89999987532   3345555


Q ss_pred             ccCCCeEE-EEecCCCeEEEee-----ceEEEEeec
Q 021744          271 VHTDSNRA-HFSRDVTSLLGSV-----SFIMFIGQN  300 (308)
Q Consensus       271 ~~~~~v~~-~~s~d~~~l~~s~-----s~~i~~~~~  300 (308)
                      . ...+.. +|+|||++|+...     ...+++...
T Consensus       423 ~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~  457 (741)
T 2ecf_A          423 K-APGMHSASFARNASVYVDSWSNNSTPPQIELFRA  457 (741)
T ss_dssp             C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred             c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence            4 455667 9999999988554     245666553

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.84  E-value=6e-18  Score=143.92  Aligned_cols=222  Identities=9%  Similarity=-0.011  Sum_probs=163.1

Q ss_pred             eeEEecCCCe-eeccC-------CCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCc
Q 021744           71 AKRFANNTWG-RNNNF-------NNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGF  140 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~-------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~  140 (308)
                      .++++|+++. ++++.       +++|.+||..+++....  ......+..+.+++++..  ++...++.|.+||+.++ 
T Consensus        45 ~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-  121 (353)
T 3vgz_A           45 EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA--IHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG-  121 (353)
T ss_dssp             EEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE--EEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTC-
T ss_pred             ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE--EecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCC-
Confidence            6899999988 55443       56899999988765422  222334677889999974  55666899999999998 


Q ss_pred             eeeeEeeCcccc---------eEEEEEeCCCCEEEEee--CCCcEEEEeCCCCeEEEEEe-CCCeeE--EEEcCCCEEEE
Q 021744          141 KLLTQLEGHQKV---------VSGITLPSGSDKLYSGS--KDETVRVWDCASGQCAGVIN-LGGEVG--CMISEGPWIFI  206 (308)
Q Consensus       141 ~~~~~~~~h~~~---------v~~~~~~~~~~~l~s~s--~dg~v~~wd~~~~~~~~~~~-~~~~v~--~~~~~~~~l~~  206 (308)
                      +.+..+..+...         +.+++|+|++++++.++  .++.|.+||+++++.+..+. ......  .+.++++++++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  201 (353)
T 3vgz_A          122 EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYT  201 (353)
T ss_dssp             CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEE
T ss_pred             eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEE
Confidence            677777654322         78899999999877665  47899999999999998887 443233  45789998887


Q ss_pred             Ec-CCcEEEEEcCCCcee-eeeC----CCCCEEEEEEeCC--EEE-EEcCCCeEEEEEcCCCCcccccceeccccCCCeE
Q 021744          207 GV-TNFVKAWNTQTNTDL-SLSG----PVGQVYAMAVGND--LLF-AGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNR  277 (308)
Q Consensus       207 ~~-d~~i~~wd~~~~~~~-~~~~----~~~~v~~~~~~~~--~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~  277 (308)
                      +. ++.|.+||+.+++.. .+..    +...+..++|+|+  +++ +...++.|.+||+.++    +.+..+.... +..
T Consensus       202 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~~~~~-~~~  276 (353)
T 3vgz_A          202 TNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG----NILAKVAAPE-SLA  276 (353)
T ss_dssp             ECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC----CEEEEEECSS-CCC
T ss_pred             EcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC----cEEEEEEcCC-Cce
Confidence            66 889999999999877 3332    4557889999998  444 4555699999999886    5555554332 333


Q ss_pred             EEEecCCCeEEEee--ceEEEEeec
Q 021744          278 AHFSRDVTSLLGSV--SFIMFIGQN  300 (308)
Q Consensus       278 ~~~s~d~~~l~~s~--s~~i~~~~~  300 (308)
                      .+|+|++++++++.  +..|+++..
T Consensus       277 ~~~s~dg~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          277 VLFNPARNEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEECCCCCEEEEEECCCCeEEEEEC
Confidence            49999999776554  556666553

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.83  E-value=1.8e-18  Score=142.95  Aligned_cols=204  Identities=7%  Similarity=0.042  Sum_probs=148.9

Q ss_pred             eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCC-CceeeeEeeCc-ccceEEEEE
Q 021744           81 RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGD-GFKLLTQLEGH-QKVVSGITL  158 (308)
Q Consensus        81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~-~~~~~~~~~~h-~~~v~~~~~  158 (308)
                      .+++.|++|++||+.+++..  ....+...+..+.|+|++..+..+.++.|++||+.+ + +....+.++ ...+.+++|
T Consensus        16 ~~~~~~~~i~~~d~~~~~~~--~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~   92 (297)
T 2ojh_A           16 PGGSMRSSIEIFNIRTRKMR--VVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDP-SPEKVDTGFATICNNDHGI   92 (297)
T ss_dssp             --CCCCEEEEEEETTTTEEE--EEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCC-SCEECCCTTCCCBCSCCEE
T ss_pred             CCCCcceeEEEEeCCCCcee--eeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCC-CceEeccccccccccceEE
Confidence            45678999999999877654  344566678999999999874445589999999998 7 555555555 478899999


Q ss_pred             eCCCCEEEEee--CCCcEEEE--eCCCCeEEEEEeCCCeeEE--EEcCCCEEE-EEc-CCcEEEEEc--CCCceeeeeCC
Q 021744          159 PSGSDKLYSGS--KDETVRVW--DCASGQCAGVINLGGEVGC--MISEGPWIF-IGV-TNFVKAWNT--QTNTDLSLSGP  228 (308)
Q Consensus       159 ~~~~~~l~s~s--~dg~v~~w--d~~~~~~~~~~~~~~~v~~--~~~~~~~l~-~~~-d~~i~~wd~--~~~~~~~~~~~  228 (308)
                      +|++++|++++  .++...+|  ++.+++ ...+.....+..  +.+++++|+ ++. ++.+++|++  .+++...+..+
T Consensus        93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~  171 (297)
T 2ojh_A           93 SPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG  171 (297)
T ss_dssp             CTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS
T ss_pred             CCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC
Confidence            99999999998  33445555  555554 334443333443  457888877 454 888888874  55666677778


Q ss_pred             CCCEEEEEEeCC--EEEEEc-CCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          229 VGQVYAMAVGND--LLFAGT-QDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       229 ~~~v~~~~~~~~--~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      ...+.+++|+|+  +|+.++ .++.+++|++....   ..+..+..|...+.. +|+|++++|+...
T Consensus       172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  235 (297)
T 2ojh_A          172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG---SSVERITDSAYGDWFPHPSPSGDKVVFVS  235 (297)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS---SCEEECCCCSEEEEEEEECTTSSEEEEEE
T ss_pred             CCccccceECCCCCEEEEEecCCCCccEEEECCCC---CCcEEEecCCcccCCeEECCCCCEEEEEE
Confidence            889999999999  555544 68999999987432   455667777778888 9999999987544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.83  E-value=6e-19  Score=170.95  Aligned_cols=242  Identities=8%  Similarity=0.017  Sum_probs=178.2

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN  104 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~  104 (308)
                      .++++++.|+++++|......           .....+.+|... ..+|+|+|+. +.+ .++.|.+||++..+..  ..
T Consensus       215 ~l~~~~~~dg~~~l~~~~~~g-----------~~~~~l~~~~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~--~l  280 (1045)
T 1k32_A          215 RIYFITDIDGFGQIYSTDLDG-----------KDLRKHTSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE--KI  280 (1045)
T ss_dssp             EEEEEECTTSSCEEEEEETTS-----------CSCEECCCCCSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE--EC
T ss_pred             EEEEEEeccCceEEEEEeCCC-----------CcceEecCCCCcceeeEcCCCCEEEEE-eCCEEEEecCCceEee--ee
Confidence            566677888999999865320           011112223333 6799999998 665 5899999998433221  11


Q ss_pred             ce-----------eeeeeeeeeee-cCCce-EEeeCCCeEEEEEcCCCceeeeEeeCccc-ceEEEEEeCCCCEEEEeeC
Q 021744          105 RA-----------VIKTDILCRNW-VQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQK-VVSGITLPSGSDKLYSGSK  170 (308)
Q Consensus       105 ~~-----------~~~~~~~~~~~-~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~  170 (308)
                      ..           +...+..+.|+ |+|.. ++++ ++.|++|++.++ + ...+..|.. .+..++|+ +++.++.++.
T Consensus       281 ~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~-~-~~~~~~~~~~~~~~~~~s-dg~~l~~~s~  356 (1045)
T 1k32_A          281 EIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT-Y-VLKVPEPLRIRYVRRGGD-TKVAFIHGTR  356 (1045)
T ss_dssp             CCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS-B-EEECSCCSCEEEEEECSS-SEEEEEEEET
T ss_pred             ccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC-c-eEEccCCCcceEEeeeEc-CCCeEEEEEC
Confidence            11           23357889999 99976 4444 899999999877 3 334666777 89999999 9999999998


Q ss_pred             CCcEE-EEeCCCCeEEEEEeCCCeeEE--EEcCCCEEEEEc-CCcEEEEEcCCCceee-eeCCCCCEEEEEEeCC--EEE
Q 021744          171 DETVR-VWDCASGQCAGVINLGGEVGC--MISEGPWIFIGV-TNFVKAWNTQTNTDLS-LSGPVGQVYAMAVGND--LLF  243 (308)
Q Consensus       171 dg~v~-~wd~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~-d~~i~~wd~~~~~~~~-~~~~~~~v~~~~~~~~--~l~  243 (308)
                      +..+. +||+.+++......+...+..  ++|++++|+++. ++.|++||+.+++... ...|...+.+++|+||  +|+
T Consensus       357 ~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la  436 (1045)
T 1k32_A          357 EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIA  436 (1045)
T ss_dssp             TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEE
T ss_pred             CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEE
Confidence            88898 999988765433334344444  368899998766 8899999999998874 4488889999999999  777


Q ss_pred             EEcCCC----------eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          244 AGTQDG----------AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       244 ~g~~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      +++.++          .|++||+.++    + +..+..|...+.. +|+|||++|+...
T Consensus       437 ~~~~~~~~~~~~~~~~~i~l~d~~~g----~-~~~l~~~~~~~~~~~~spdG~~l~~~s  490 (1045)
T 1k32_A          437 YGFPLKHGETDGYVMQAIHVYDMEGR----K-IFAATTENSHDYAPAFDADSKNLYYLS  490 (1045)
T ss_dssp             EEEEECSSTTCSCCEEEEEEEETTTT----E-EEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred             EEecCccccccCCCCCeEEEEECCCC----c-EEEeeCCCcccCCceEcCCCCEEEEEe
Confidence            776544          8999999985    4 5667778878888 9999999888544

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.83  E-value=3.8e-18  Score=145.20  Aligned_cols=220  Identities=9%  Similarity=0.064  Sum_probs=147.7

Q ss_pred             eeEEecCCCe-eecc--CCCcEEEEECCCCCCccccc-ceeeeeeeeeeeecCCce-EEee-CCCeEEEEEcCC-Cc-ee
Q 021744           71 AKRFANNTWG-RNNN--FNNHSNNYRAGNSKNSNINN-RAVIKTDILCRNWVQGNC-MYGE-KCKFLHSWTVGD-GF-KL  142 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~--~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~g~-~d~~i~iwd~~~-~~-~~  142 (308)
                      .++|+|+|+. +++.  .++.|++|++.+++...... ..+...+..++++|++.. ++++ .++.|.+|++.. +. +.
T Consensus        44 ~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~  123 (347)
T 3hfq_A           44 YLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTL  123 (347)
T ss_dssp             CEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred             eEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeee
Confidence            6999999988 5543  37899999996654321111 223445778899999975 5555 789999999963 21 22


Q ss_pred             eeEeeC---------cccceEEEEEeCCCCEEEEeeCCCcEEEEeCC-CCeEEEE--Ee--CCCeeE--EEEcCCCEEEE
Q 021744          143 LTQLEG---------HQKVVSGITLPSGSDKLYSGSKDETVRVWDCA-SGQCAGV--IN--LGGEVG--CMISEGPWIFI  206 (308)
Q Consensus       143 ~~~~~~---------h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~-~~~~~~~--~~--~~~~v~--~~~~~~~~l~~  206 (308)
                      +..+..         +...+.+++|+|+++++++...++.|.+|++. +++....  +.  ......  .+.++++++++
T Consensus       124 ~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v  203 (347)
T 3hfq_A          124 TDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFL  203 (347)
T ss_dssp             EEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             cceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEE
Confidence            333321         12248899999999966777778999999998 5543322  22  121222  44688997765


Q ss_pred             -Ec-CCcEEEEEcCC--Ccee---eeeCCC------CCEEEEEEeCC--EE-EEEcCCCeEEEEEcCCCCcccccceecc
Q 021744          207 -GV-TNFVKAWNTQT--NTDL---SLSGPV------GQVYAMAVGND--LL-FAGTQDGAILAWKFNVTTNCFEPAASLK  270 (308)
Q Consensus       207 -~~-d~~i~~wd~~~--~~~~---~~~~~~------~~v~~~~~~~~--~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~  270 (308)
                       +. ++.|.+|++..  ++..   .+....      ..+..++|+|+  +| ++...++.|.+|++.... ..+.+..+.
T Consensus       204 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g-~~~~~~~~~  282 (347)
T 3hfq_A          204 AGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG-HLTLIQQIS  282 (347)
T ss_dssp             EETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG-CEEEEEEEE
T ss_pred             EeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC-cEEEeEEEe
Confidence             44 78999999874  4432   222222      45889999999  45 566678999999997321 124555666


Q ss_pred             ccCCCeEE-EEecCCCeEEEee
Q 021744          271 VHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       271 ~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      .+...+.. +|+|||++|+++.
T Consensus       283 ~~~~~~~~~~~spdg~~l~v~~  304 (347)
T 3hfq_A          283 TEGDFPRDFDLDPTEAFVVVVN  304 (347)
T ss_dssp             CSSSCCCEEEECTTSSEEEEEE
T ss_pred             cCCCCcCeEEECCCCCEEEEEE
Confidence            66666677 9999999888665

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.82  E-value=9.8e-18  Score=141.84  Aligned_cols=248  Identities=9%  Similarity=0.062  Sum_probs=153.4

Q ss_pred             CCceEEecCC-CeEEEeecC--CCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-e-eccCCCcEEEEECCCCCC
Q 021744           26 GGLSTADTRQ-KVCNYWRAG--KCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-R-NNNFNNHSNNYRAGNSKN   99 (308)
Q Consensus        26 ~~~~~s~s~d-~~i~~W~~~--~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~-s~~~d~~i~vwd~~~~~~   99 (308)
                      +.++++++.+ +.|++|+..  .+..   ..+.       ....+... .++|+|+++. + ++..++.|++||+..+..
T Consensus        49 g~~l~~~~~~~~~v~~~~~~~~~~~~---~~~~-------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~  118 (343)
T 1ri6_A           49 KRYLYVGVRPEFRVLAYRIAPDDGAL---TFAA-------ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP  118 (343)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTTCCE---EEEE-------EEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE
T ss_pred             CCEEEEeecCCCeEEEEEecCCCCce---eecc-------ccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc
Confidence            5556666665 999999987  3310   0000       00111122 7999999997 4 445589999999953221


Q ss_pred             ccc-ccceeeeeeeeeeeecCCce-EEee-CCCeEEEEEcCC-Cceeee----EeeC-cccceEEEEEeCCCCEEEEe-e
Q 021744          100 SNI-NNRAVIKTDILCRNWVQGNC-MYGE-KCKFLHSWTVGD-GFKLLT----QLEG-HQKVVSGITLPSGSDKLYSG-S  169 (308)
Q Consensus       100 ~~~-~~~~~~~~~~~~~~~~~~~~-~~g~-~d~~i~iwd~~~-~~~~~~----~~~~-h~~~v~~~~~~~~~~~l~s~-s  169 (308)
                      ... ........+..+.|+|++.. ++++ .++.|++||+.+ + +...    .+.. ....+..++|+|++++++.+ .
T Consensus       119 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~  197 (343)
T 1ri6_A          119 VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG-HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE  197 (343)
T ss_dssp             EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS-CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCC-ceeeecccccccCCCCCcceEEECCCCCEEEEEeC
Confidence            110 11111223777889999965 4444 899999999987 5 3321    2222 23478899999999977544 5


Q ss_pred             CCCcEEEEeCCC--CeE--EEEEe-CC------Cee--EEEEcCCCEEEE-Ec-CCcEEEEEcC--CCc--ee-eeeCCC
Q 021744          170 KDETVRVWDCAS--GQC--AGVIN-LG------GEV--GCMISEGPWIFI-GV-TNFVKAWNTQ--TNT--DL-SLSGPV  229 (308)
Q Consensus       170 ~dg~v~~wd~~~--~~~--~~~~~-~~------~~v--~~~~~~~~~l~~-~~-d~~i~~wd~~--~~~--~~-~~~~~~  229 (308)
                      .++.|.+|++..  ++.  ...+. ..      ..+  .++.+++++|++ +. ++.|.+||+.  +++  .+ .+..+.
T Consensus       198 ~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~  277 (343)
T 1ri6_A          198 LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET  277 (343)
T ss_dssp             TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS
T ss_pred             CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC
Confidence            889999999953  433  33332 11      112  234678888774 43 8899999998  333  23 333333


Q ss_pred             CCEEEEEEeCC--EEEEEc-CCCeEEEEEcCCCCcccccceeccccCCCeEEEEecCCC
Q 021744          230 GQVYAMAVGND--LLFAGT-QDGAILAWKFNVTTNCFEPAASLKVHTDSNRAHFSRDVT  285 (308)
Q Consensus       230 ~~v~~~~~~~~--~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~s~d~~  285 (308)
                       .+.+++|+|+  +|++++ .++.|.+|++.......+.+..+.....+...+|.++..
T Consensus       278 -~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          278 -QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEG  335 (343)
T ss_dssp             -SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred             -ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEEcccC
Confidence             3889999998  666666 689999996653322124455555544555557777643

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.82  E-value=1.8e-18  Score=151.74  Aligned_cols=185  Identities=9%  Similarity=-0.057  Sum_probs=130.6

Q ss_pred             eeEEecCCCe-e----eccCCCcEEEEECCCC-----CC---c--ccccceeeeeeeeeeeecC-Cce-EEeeCCCeEEE
Q 021744           71 AKRFANNTWG-R----NNNFNNHSNNYRAGNS-----KN---S--NINNRAVIKTDILCRNWVQ-GNC-MYGEKCKFLHS  133 (308)
Q Consensus        71 ~i~~s~~g~~-~----s~~~d~~i~vwd~~~~-----~~---~--~~~~~~~~~~~~~~~~~~~-~~~-~~g~~d~~i~i  133 (308)
                      +++|+|+|++ +    +++.|++|+|||+.+.     +.   +  ......|...+..+.|+|+ +.. ++++.|+.|++
T Consensus        97 ~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~i  176 (434)
T 2oit_A           97 HLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAV  176 (434)
T ss_dssp             EEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             EEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEE
Confidence            8999999999 7    8999999999998644     11   1  1123446777999999998 554 88999999999


Q ss_pred             EEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CC-------CeeEEE--EcCCCE
Q 021744          134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LG-------GEVGCM--ISEGPW  203 (308)
Q Consensus       134 wd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~-------~~v~~~--~~~~~~  203 (308)
                      ||++++ .......+|...|.+++|+|++++|++|+.||+|++||++ ++....+. +.       ..+.++  .+++.+
T Consensus       177 wD~~~~-~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~  254 (434)
T 2oit_A          177 LQVTET-VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVF  254 (434)
T ss_dssp             EEESSS-EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred             EEcCCC-cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceE
Confidence            999988 6666677899999999999999999999999999999998 66666554 11       145555  355566


Q ss_pred             EEEEc--CC------cEEEEEcCCCce---e---eee-------CCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcC
Q 021744          204 IFIGV--TN------FVKAWNTQTNTD---L---SLS-------GPVGQVYAMAVGND---LLFAGTQDGAILAWKFN  257 (308)
Q Consensus       204 l~~~~--d~------~i~~wd~~~~~~---~---~~~-------~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~  257 (308)
                      +++..  +|      .+++||+++.+.   .   .+.       ....+...+.+.++   .+++.+....|.+....
T Consensus       255 l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          255 AIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             EEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred             EEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence            65422  43      389999986521   1   111       12223333444465   45555556666666543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.81  E-value=6.2e-18  Score=157.68  Aligned_cols=252  Identities=10%  Similarity=0.024  Sum_probs=165.0

Q ss_pred             CCceEEecCC---------CeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEE
Q 021744           26 GGLSTADTRQ---------KVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYR   93 (308)
Q Consensus        26 ~~~~~s~s~d---------~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd   93 (308)
                      |.+||+++.+         +.+++||..++..   .      +.. ...+|...  .++|||||+. |.++. ++|++||
T Consensus        72 g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~------~l~-~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~  140 (723)
T 1xfd_A           72 REYALFSYNVEPIYQHSYTGYYVLSKIPHGDP---Q------SLD-PPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA  140 (723)
T ss_dssp             SSEEEEEESCCCCSSSCCCSEEEEEESSSCCC---E------ECC-CTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred             CCEEEEEecCccceeecceeeEEEEECCCCce---E------ecc-CCccccccccccEECCCCCEEEEEEC-CeEEEEE
Confidence            6678888764         7888999987711   0      011 11233322  6899999998 66665 7899999


Q ss_pred             CCCCCCcccccceee-----------------eeeeeeeeecCCce-EEeeCC---------------------------
Q 021744           94 AGNSKNSNINNRAVI-----------------KTDILCRNWVQGNC-MYGEKC---------------------------  128 (308)
Q Consensus        94 ~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~-~~g~~d---------------------------  128 (308)
                      +.+++..........                 ..+..+.|+|+|.. ++++.+                           
T Consensus       141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (723)
T 1xfd_A          141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK  220 (723)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred             CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence            987754322111111                 01267899999976 555433                           


Q ss_pred             -------CeEEEEEcCCCceeeeEeeCc------ccceEEEEEeCCCCEEEEeeC----CCcEEEEeCCCCeEEEEEe--
Q 021744          129 -------KFLHSWTVGDGFKLLTQLEGH------QKVVSGITLPSGSDKLYSGSK----DETVRVWDCASGQCAGVIN--  189 (308)
Q Consensus       129 -------~~i~iwd~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~l~s~s~----dg~v~~wd~~~~~~~~~~~--  189 (308)
                             ..|++||+.++ +....+..+      ...+..++|+||++++++.+.    +..|++||+.+++....+.  
T Consensus       221 ~G~~~~~~~l~~~d~~~~-~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~  299 (723)
T 1xfd_A          221 AGSENPSISLHVIGLNGP-THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE  299 (723)
T ss_dssp             TTSCCCEEEEEEEESSSS-CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred             CCCCCCeeEEEEEECCCC-ceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec
Confidence                   28999999888 444555543      678899999999998876653    3579999999998776654  


Q ss_pred             CCCe------eEEEEcCCCEEEE--Ec-CC------cEEEEE-cCCCc---eeeeeCCCCCEEE-EEEeCC--EEEE-Ec
Q 021744          190 LGGE------VGCMISEGPWIFI--GV-TN------FVKAWN-TQTNT---DLSLSGPVGQVYA-MAVGND--LLFA-GT  246 (308)
Q Consensus       190 ~~~~------v~~~~~~~~~l~~--~~-d~------~i~~wd-~~~~~---~~~~~~~~~~v~~-~~~~~~--~l~~-g~  246 (308)
                      +...      ...++++++.|+.  +. ++      .|.+|| ..+++   ...+..+...+.. ++|+|+  .|+. +.
T Consensus       300 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~  379 (723)
T 1xfd_A          300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLST  379 (723)
T ss_dssp             CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEES
T ss_pred             cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEc
Confidence            2222      2345788986663  33 56      577778 45555   4455544444554 699999  5554 44


Q ss_pred             CC--CeEEEEEcCCCCcccccceeccc---cCCCeEE-EEecCCCeEEEee
Q 021744          247 QD--GAILAWKFNVTTNCFEPAASLKV---HTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       247 ~d--g~i~iwd~~~~~~~~~~~~~~~~---~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      .+  +.+++|++.....  .....+..   |...+.. +|+|||++++..+
T Consensus       380 ~~~~~~~~l~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          380 EDLPRRRQLYSANTVGN--FNRQCLSCDLVENCTYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             SSCTTCCEEEEECSSTT--CCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             CCCCcceEEEEEeCCCC--CCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence            44  8899999875421  12333432   5666777 9999999988654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.81  E-value=2e-18  Score=157.24  Aligned_cols=245  Identities=8%  Similarity=-0.043  Sum_probs=165.3

Q ss_pred             CCceEEecC-CCeEEEeecCCCCCCCCCcccccCCCCCCccccc-cc--eeEEecCCCe-eeccC---CCcEEEEECCC-
Q 021744           26 GGLSTADTR-QKVCNYWRAGKCNRFPCPYLHRELPLPPAATANG-AA--AKRFANNTWG-RNNNF---NNHSNNYRAGN-   96 (308)
Q Consensus        26 ~~~~~s~s~-d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~--~i~~s~~g~~-~s~~~---d~~i~vwd~~~-   96 (308)
                      |..||+++. |++++||+...+           .+  ..+..|. ..  .++|+|| +. ++++.   +...++|.+.. 
T Consensus        33 G~~la~~s~~~g~~~lw~~~~g-----------~~--~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           33 GDKLLVVGFSEGSVNAYLYDGG-----------ET--VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             TTEEEEEEEETTEEEEEEEETT-----------EE--EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             CCeEEEEEccCCceeEEEEcCC-----------Cc--EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            567888776 999999998655           11  1111222 22  6889999 66 65554   55567766643 


Q ss_pred             --CCCcccccceeeeeeeeeeeecCCc--eEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCC-
Q 021744           97 --SKNSNINNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD-  171 (308)
Q Consensus        97 --~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-  171 (308)
                        +...  .... ........+++++.  .++.+.++.+.+||+.++ +...... +..  .+++|+|||++|++++.+ 
T Consensus        99 ~~g~~~--~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g-~~~~l~~-~~~--~~~~~spDG~~la~~~~~~  171 (582)
T 3o4h_A           99 RPGEEQ--RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGG-GLRELAR-LPG--FGFVSDIRGDLIAGLGFFG  171 (582)
T ss_dssp             STTCCE--ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETT-EEEEEEE-ESS--CEEEEEEETTEEEEEEEEE
T ss_pred             CCCccc--cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCC-cEEEeec-CCC--ceEEECCCCCEEEEEEEcC
Confidence              2111  1111 11233457788874  344444455559999988 4444333 333  889999999999988877 


Q ss_pred             ---CcEEEEeCCCCeEEEEEeCCCeeEE--EEcCCCEEEEEc-CC--cEEEEEcCCCceeeeeCCCCCEEEEE-------
Q 021744          172 ---ETVRVWDCASGQCAGVINLGGEVGC--MISEGPWIFIGV-TN--FVKAWNTQTNTDLSLSGPVGQVYAMA-------  236 (308)
Q Consensus       172 ---g~v~~wd~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~-d~--~i~~wd~~~~~~~~~~~~~~~v~~~~-------  236 (308)
                         ..|++||+.+++......+...+..  ++|||++|+++. ++  .|++||+.+++...+..|...+..++       
T Consensus       172 ~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (582)
T 3o4h_A          172 GGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWL  251 (582)
T ss_dssp             TTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEE
T ss_pred             CCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccce
Confidence               7899999998887644445555554  368999999655 77  89999999988775566766666666       


Q ss_pred             -EeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee----ceEEEEeecC
Q 021744          237 -VGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV----SFIMFIGQNN  301 (308)
Q Consensus       237 -~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~----s~~i~~~~~~  301 (308)
                       |+||  ++++++.|+.+++|++  +    +...   .....+.. +|+ ++++++...    ...+|.....
T Consensus       252 ~~spdg~~~~~~~~~g~~~l~~~--g----~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          252 GYLPDGRLAVVARREGRSAVFID--G----ERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             EECTTSCEEEEEEETTEEEEEET--T----EEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             eEcCCCcEEEEEEcCCcEEEEEE--C----Ceec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence             9999  8889999999999999  4    3333   23356777 999 888887544    3556766543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.80  E-value=7.8e-18  Score=142.10  Aligned_cols=227  Identities=11%  Similarity=0.063  Sum_probs=153.3

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccc-cc-eeEEecCCCe-eecc------------CCCcEEE
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANG-AA-AKRFANNTWG-RNNN------------FNNHSNN   91 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~-~i~~s~~g~~-~s~~------------~d~~i~v   91 (308)
                      .++++++.++.|++||..++..     +. ..+...+ ..|. .. .++|+|+|+. +++.            .++.|.+
T Consensus        47 ~l~v~~~~~~~v~~~d~~~~~~-----~~-~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v  119 (337)
T 1pby_B           47 IAYATVNKSESLVKIDLVTGET-----LG-RIDLSTP-EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVAL  119 (337)
T ss_dssp             EEEEEETTTTEEEEEETTTCCE-----EE-EEECCBT-TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEE
T ss_pred             EEEEEeCCCCeEEEEECCCCCe-----Ee-eEEcCCc-ccccccccceEECCCCCEEEEEecccccccccccccCceEEE
Confidence            4567778889999999887621     00 0111100 0011 12 6899999988 6664            5799999


Q ss_pred             EECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCC
Q 021744           92 YRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD  171 (308)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d  171 (308)
                      ||+.+++....  ......+..+.++|++..+... ++.|++||+.++ +....+..+.. ...+.|+|++..++..+..
T Consensus       120 ~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~-~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~  194 (337)
T 1pby_B          120 YDAETLSRRKA--FEAPRQITMLAWARDGSKLYGL-GRDLHVMDPEAG-TLVEDKPIQSW-EAETYAQPDVLAVWNQHES  194 (337)
T ss_dssp             EETTTTEEEEE--EECCSSCCCEEECTTSSCEEEE-SSSEEEEETTTT-EEEEEECSTTT-TTTTBCCCBCCCCCCCCTT
T ss_pred             EECCCCcEEEE--EeCCCCcceeEECCCCCEEEEe-CCeEEEEECCCC-cEeeeeecccc-CCCceeCCCccEEeeeccC
Confidence            99987654321  1122346778899999753333 689999999988 66666654431 1133788988876544432


Q ss_pred             -C-----------------------cEEEEeCCCCeEEEEEe---CCCeeE--EEEcCCCEEEEEcCCcEEEEEcCCCce
Q 021744          172 -E-----------------------TVRVWDCASGQCAGVIN---LGGEVG--CMISEGPWIFIGVTNFVKAWNTQTNTD  222 (308)
Q Consensus       172 -g-----------------------~v~~wd~~~~~~~~~~~---~~~~v~--~~~~~~~~l~~~~d~~i~~wd~~~~~~  222 (308)
                       +                       .|.+||+.+++.. .+.   +...+.  .+.+++++++++ ++.|.+||+.+++.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~  272 (337)
T 1pby_B          195 SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNAS  272 (337)
T ss_dssp             TTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEE
T ss_pred             CCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcC
Confidence             2                       4689999998775 333   333333  346889998877 89999999999887


Q ss_pred             eeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccc
Q 021744          223 LSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKV  271 (308)
Q Consensus       223 ~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  271 (308)
                      .........+.+++|+|+  +|++++.++.|++||+.++    +.+..+..
T Consensus       273 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~----~~~~~~~~  319 (337)
T 1pby_B          273 IKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL----EKKGQVDL  319 (337)
T ss_dssp             EEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC----CEEEEEEC
T ss_pred             cceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCC----cEEEEEEc
Confidence            733333456789999998  7888888999999999987    55555543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.80  E-value=8.6e-18  Score=142.61  Aligned_cols=219  Identities=6%  Similarity=-0.007  Sum_probs=152.4

Q ss_pred             eEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744           72 KRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEG  148 (308)
Q Consensus        72 i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~  148 (308)
                      +++++++.. ++++.+++|++||+.+++............+..+.+++++..  +++..++.|.+||+.++ +.+..+..
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~-~~~~~~~~   83 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHANL   83 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEES
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC-cEEEEEEc
Confidence            567778878 999999999999998876543222111114677889999964  55567899999999988 66666653


Q ss_pred             c------ccceEEEEEeCCCCEEEEeeCC------------CcEEEEeCCCCe---EEEEEeCCCeeEE--EEcCCCEEE
Q 021744          149 H------QKVVSGITLPSGSDKLYSGSKD------------ETVRVWDCASGQ---CAGVINLGGEVGC--MISEGPWIF  205 (308)
Q Consensus       149 h------~~~v~~~~~~~~~~~l~s~s~d------------g~v~~wd~~~~~---~~~~~~~~~~v~~--~~~~~~~l~  205 (308)
                      +      ...+..++|+|+++++++++.+            +.|.+||+.+++   .+..+.....+.+  +.++++ ++
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~  162 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LY  162 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EE
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EE
Confidence            2      2347899999999999988865            899999998843   3444554444443  457888 55


Q ss_pred             EEcCCcEEEEEcCCCcee-eeeCCC-------------------------------------------------------
Q 021744          206 IGVTNFVKAWNTQTNTDL-SLSGPV-------------------------------------------------------  229 (308)
Q Consensus       206 ~~~d~~i~~wd~~~~~~~-~~~~~~-------------------------------------------------------  229 (308)
                      ++ ++.|.+||+.+++.. .+..+.                                                       
T Consensus       163 ~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  241 (349)
T 1jmx_B          163 VA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK  241 (349)
T ss_dssp             EE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred             Ec-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEecc
Confidence            54 344999999988765 332211                                                       


Q ss_pred             -------------CCEEEEEEeC-C--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-
Q 021744          230 -------------GQVYAMAVGN-D--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-  291 (308)
Q Consensus       230 -------------~~v~~~~~~~-~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-  291 (308)
                                   ..+.+++++| +  +++++  ++.|.+||+.++    +.+..+.... .+.. +|+||+++|+++. 
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~----~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~  314 (349)
T 1jmx_B          242 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR----KLIKAANLDH-TYYCVAFDKKGDKLYLGGT  314 (349)
T ss_dssp             TCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT----EEEEEEECSS-CCCEEEECSSSSCEEEESB
T ss_pred             CCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC----eEEEEEcCCC-CccceEECCCCCEEEEecC
Confidence                         1345677788 7  66666  889999999986    5555555333 3445 9999998887544 


Q ss_pred             ceEEEEeec
Q 021744          292 SFIMFIGQN  300 (308)
Q Consensus       292 s~~i~~~~~  300 (308)
                      +..|+++..
T Consensus       315 ~~~v~v~d~  323 (349)
T 1jmx_B          315 FNDLAVFNP  323 (349)
T ss_dssp             SSEEEEEET
T ss_pred             CCeEEEEec
Confidence            455555553

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.79  E-value=7.6e-18  Score=163.24  Aligned_cols=227  Identities=9%  Similarity=-0.002  Sum_probs=165.9

Q ss_pred             cccccc--eeEEecCCCe-eeccCCCcEEEEECCC-CCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCc
Q 021744           65 TANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGN-SKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGF  140 (308)
Q Consensus        65 ~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~  140 (308)
                      .+|...  ++.|+++ .. ++++.|++++||.++. +... .....+. .+....|+|+|..+....++.|++|++... 
T Consensus       200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~-~~l~~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~~~-  275 (1045)
T 1k32_A          200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDL-RKHTSFT-DYYPRHLNTDGRRILFSKGGSIYIFNPDTE-  275 (1045)
T ss_dssp             ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSC-EECCCCC-SSCEEEEEESSSCEEEEETTEEEEECTTTC-
T ss_pred             cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcc-eEecCCC-CcceeeEcCCCCEEEEEeCCEEEEecCCce-
Confidence            355555  7888888 55 7888899999998753 2111 1122222 345568999997644446999999999544 


Q ss_pred             eeeeEeeC-----------cccceEEEEEe-CCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCC-eeEEE-EcCCCEEEE
Q 021744          141 KLLTQLEG-----------HQKVVSGITLP-SGSDKLYSGSKDETVRVWDCASGQCAGVINLGG-EVGCM-ISEGPWIFI  206 (308)
Q Consensus       141 ~~~~~~~~-----------h~~~v~~~~~~-~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~-~v~~~-~~~~~~l~~  206 (308)
                      + +..+.+           |...+..++|+ |+++.|++++ ++.+.+|++.+++......+.. .+..+ +.+++.++.
T Consensus       276 ~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~sdg~~l~~  353 (1045)
T 1k32_A          276 K-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIH  353 (1045)
T ss_dssp             C-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEE
T ss_pred             E-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEcCCCeEEE
Confidence            3 335554           44578999999 9999998887 7899999999887554333444 45544 237777776


Q ss_pred             Ec-CCcEE-EEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEe
Q 021744          207 GV-TNFVK-AWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFS  281 (308)
Q Consensus       207 ~~-d~~i~-~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s  281 (308)
                      ++ +..+. +||+.+++...+..|...+..++|+|+  +|++++.++.|++||+.++    +....+..|...+.. +|+
T Consensus       354 ~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg----~~~~~~~~~~~~v~~~~~S  429 (1045)
T 1k32_A          354 GTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG----KPTVIERSREAMITDFTIS  429 (1045)
T ss_dssp             EETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC----CEEEEEECSSSCCCCEEEC
T ss_pred             EECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC----ceEEeccCCCCCccceEEC
Confidence            55 66788 899998887766678889999999999  8999999999999999986    445555578888888 999


Q ss_pred             cCCCeEEEee-c----------eEEEEeecC
Q 021744          282 RDVTSLLGSV-S----------FIMFIGQNN  301 (308)
Q Consensus       282 ~d~~~l~~s~-s----------~~i~~~~~~  301 (308)
                      |||++|+.+. .          ..|+++...
T Consensus       430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             TTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             CCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence            9999998554 2          367776543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.79  E-value=7.9e-18  Score=153.27  Aligned_cols=210  Identities=9%  Similarity=-0.046  Sum_probs=146.9

Q ss_pred             eeEEecCCCe-eeccC-CCcEEEEECCCCCCcccccceee-eeeeeeeeecCCce-EEeeC---CCeEEEEEcCC--Cce
Q 021744           71 AKRFANNTWG-RNNNF-NNHSNNYRAGNSKNSNINNRAVI-KTDILCRNWVQGNC-MYGEK---CKFLHSWTVGD--GFK  141 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~-d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~g~~---d~~i~iwd~~~--~~~  141 (308)
                      .++|+|||+. |+++. |++++||++++++..  ....+. ..+....|+|+ .. ++++.   +...++|.+..  ...
T Consensus        26 ~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~--~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~  102 (582)
T 3o4h_A           26 SLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV--KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGE  102 (582)
T ss_dssp             EEEEEETTTEEEEEEEETTEEEEEEEETTEEE--ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTC
T ss_pred             eeecCCCCCeEEEEEccCCceeEEEEcCCCcE--eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCc
Confidence            7899999999 77776 999999998655432  222333 45788889988 55 33333   45556655433  212


Q ss_pred             eeeEeeCcccceEEEEEeCCCCE--EEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEc-C----CcEEE
Q 021744          142 LLTQLEGHQKVVSGITLPSGSDK--LYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGV-T----NFVKA  214 (308)
Q Consensus       142 ~~~~~~~h~~~v~~~~~~~~~~~--l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d----~~i~~  214 (308)
                      .. .+... ..+...+|+|+++.  +++++. +.+.+||+.+++..........-..++|+|++|+.++ +    ..|++
T Consensus       103 ~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~~  179 (582)
T 3o4h_A          103 EQ-RLEAV-KPMRILSGVDTGEAVVFTGATE-DRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFT  179 (582)
T ss_dssp             CE-ECTTS-CSBEEEEEEECSSCEEEEEECS-SCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEE
T ss_pred             cc-cccCC-CCceeeeeCCCCCeEEEEecCC-CCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeEEEE
Confidence            22 33322 23446678887753  444444 4555999999987766665543345579999999544 4    68999


Q ss_pred             EEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCC--eEEEEEcCCCCcccccceeccccCCCeEE-E--------Ee
Q 021744          215 WNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDG--AILAWKFNVTTNCFEPAASLKVHTDSNRA-H--------FS  281 (308)
Q Consensus       215 wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~--------~s  281 (308)
                      ||+.+++...+..|...+.+++|+||  .|+++..++  .|++||+.++    +.. .+..|...+.. +        |+
T Consensus       180 ~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~s  254 (582)
T 3o4h_A          180 SNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG----SVE-DLELPSKDFSSYRPTAITWLGYL  254 (582)
T ss_dssp             EETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC----CEE-ECCCSCSHHHHHCCSEEEEEEEC
T ss_pred             EcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC----cEE-EccCCCcChhhhhhccccceeEc
Confidence            99999998888889999999999999  788888888  8999999986    333 56667666666 6        99


Q ss_pred             cCCCeEEEee
Q 021744          282 RDVTSLLGSV  291 (308)
Q Consensus       282 ~d~~~l~~s~  291 (308)
                      |||.+++++.
T Consensus       255 pdg~~~~~~~  264 (582)
T 3o4h_A          255 PDGRLAVVAR  264 (582)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCcEEEEEE
Confidence            9996555443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.78  E-value=2e-16  Score=135.36  Aligned_cols=225  Identities=9%  Similarity=0.052  Sum_probs=139.9

Q ss_pred             eeEEecCCCe-eeccCC----CcEEEEECCC--CCCcccccce-eeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCc
Q 021744           71 AKRFANNTWG-RNNNFN----NHSNNYRAGN--SKNSNINNRA-VIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGF  140 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d----~~i~vwd~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~  140 (308)
                      .++|+|+|++ ++++.+    +.|++|+++.  ++........ +......+.+  ++..  ++...++.|.+|++....
T Consensus        54 ~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g  131 (361)
T 3scy_A           54 YLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDG  131 (361)
T ss_dssp             SEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTS
T ss_pred             eEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCC
Confidence            6899999998 777765    7999999864  3221111111 1122333444  6654  334468999999997542


Q ss_pred             eeeeEe------eC--------cccceEEEEEeCCCCEEEEee-CCCcEEEEeCCCCeE------E------EEEe--CC
Q 021744          141 KLLTQL------EG--------HQKVVSGITLPSGSDKLYSGS-KDETVRVWDCASGQC------A------GVIN--LG  191 (308)
Q Consensus       141 ~~~~~~------~~--------h~~~v~~~~~~~~~~~l~s~s-~dg~v~~wd~~~~~~------~------~~~~--~~  191 (308)
                       .+..+      .+        +...+.+++|+|++++++.++ .++.|.+|++.....      +      ....  ..
T Consensus       132 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  210 (361)
T 3scy_A          132 -ALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPG  210 (361)
T ss_dssp             -CBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTT
T ss_pred             -cCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCC
Confidence             11111      11        123457899999999765554 588999998875331      1      1222  22


Q ss_pred             CeeE--EEEcCCCEEEEEc--CCcEEEEEcCCCcee---ee---eCCCCCEEEEEEeCC--EEEEEc-C-CCeEEEEEcC
Q 021744          192 GEVG--CMISEGPWIFIGV--TNFVKAWNTQTNTDL---SL---SGPVGQVYAMAVGND--LLFAGT-Q-DGAILAWKFN  257 (308)
Q Consensus       192 ~~v~--~~~~~~~~l~~~~--d~~i~~wd~~~~~~~---~~---~~~~~~v~~~~~~~~--~l~~g~-~-dg~i~iwd~~  257 (308)
                      ....  .+.+++++++++.  ++.|.+||+.+++..   .+   ..+...+..++|+|+  +|+++. . ++.|.+|++.
T Consensus       211 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          211 SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            2233  3468898877544  789999999877653   22   233355789999999  665544 4 5899999997


Q ss_pred             CCCcccccceeccccCCCeEE-EEecCCCeEEEee----ceEEEEee
Q 021744          258 VTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV----SFIMFIGQ  299 (308)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~----s~~i~~~~  299 (308)
                      ......+.+..+.. ...+.. +|+|||++|+++.    .+.+|.+.
T Consensus       291 ~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          291 ETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             TTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence            32211234444544 445666 9999999888665    34555444

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.75  E-value=1.9e-17  Score=154.46  Aligned_cols=252  Identities=8%  Similarity=-0.093  Sum_probs=162.4

Q ss_pred             ceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCcccccc----c-eeEEecCCCe-eeccC---------CCcEEEE
Q 021744           28 LSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGA----A-AKRFANNTWG-RNNNF---------NNHSNNY   92 (308)
Q Consensus        28 ~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~----~-~i~~s~~g~~-~s~~~---------d~~i~vw   92 (308)
                      .++..+.|++|++||..++..            .....+|..    . .++|||||+. ++++.         |++|++|
T Consensus        28 ~~~~~~~d~~i~~~~~~~g~~------------~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           28 EYLHQSADNNIVLYNIETGQS------------YTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             EEEEECTTSCEEEEESSSCCE------------EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             eEEEEcCCCCEEEEEcCCCcE------------EEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence            455555799999999988711            011112211    2 6899999998 77765         7899999


Q ss_pred             ECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEe-eCcccce-----------------E
Q 021744           93 RAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQL-EGHQKVV-----------------S  154 (308)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~-~~h~~~v-----------------~  154 (308)
                      |+++++....  ......+..+.|+|+|..+.-..++.|++|++.++ +..... .++...|                 .
T Consensus        96 d~~~g~~~~~--~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g-~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~  172 (719)
T 1z68_A           96 DLSNGEFVRG--NELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGD-PPFQITFNGRENKIFNGIPDWVYEEEMLATKY  172 (719)
T ss_dssp             ETTTTEECCS--SCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTS-CCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred             ECCCCccccc--eecCcccccceECCCCCEEEEEECCeEEEEeCCCC-CcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence            9988765210  11123477899999997744446899999999887 333221 2333322                 4


Q ss_pred             EEEEeCCCCEEEEeeCCC----------------------------------cEEEEeCCCCeEE--EEEe-------CC
Q 021744          155 GITLPSGSDKLYSGSKDE----------------------------------TVRVWDCASGQCA--GVIN-------LG  191 (308)
Q Consensus       155 ~~~~~~~~~~l~s~s~dg----------------------------------~v~~wd~~~~~~~--~~~~-------~~  191 (308)
                      +++|+|||++|++++.|.                                  .|++||+.+++..  ..+.       +.
T Consensus       173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  252 (719)
T 1z68_A          173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD  252 (719)
T ss_dssp             CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred             cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence            899999999999988653                                  7889999987653  1111       33


Q ss_pred             CeeEEE--EcCCCEEEEEc-C----CcEEEEE----cCCCceee-e----eCCCCCEE-----EEEEeCC--E-EE-EEc
Q 021744          192 GEVGCM--ISEGPWIFIGV-T----NFVKAWN----TQTNTDLS-L----SGPVGQVY-----AMAVGND--L-LF-AGT  246 (308)
Q Consensus       192 ~~v~~~--~~~~~~l~~~~-d----~~i~~wd----~~~~~~~~-~----~~~~~~v~-----~~~~~~~--~-l~-~g~  246 (308)
                      ..+..+  +|+++++++.. .    ..|.+||    +.+++... +    ..|...+.     .+.|+|+  . ++ +..
T Consensus       253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  332 (719)
T 1z68_A          253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSD  332 (719)
T ss_dssp             EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEEC
T ss_pred             ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEc
Confidence            344443  57776666533 2    2488999    87777663 3    35666666     7899998  3 33 455


Q ss_pred             CCCe--EEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-c-------eEEEEeec
Q 021744          247 QDGA--ILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-S-------FIMFIGQN  300 (308)
Q Consensus       247 ~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s-------~~i~~~~~  300 (308)
                      .+|.  |.+||+.++    + ...+..+...+.. .++ +++.++.+. .       ..+|....
T Consensus       333 ~~g~~~l~~~~~~~~----~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          333 KDGYKHIHYIKDTVE----N-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             TTSCEEEEEESSCST----T-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             cCCceEEEEEECCCC----c-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            6664  556666553    2 3455555556666 666 777776443 3       56777654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.75  E-value=1.4e-17  Score=155.28  Aligned_cols=219  Identities=7%  Similarity=-0.021  Sum_probs=151.6

Q ss_pred             eeEEecCCCeeeccCCCcEEEEECCCCCCcccccceeee---eeeeeeeecCCce-EEeeC---------CCeEEEEEcC
Q 021744           71 AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIK---TDILCRNWVQGNC-MYGEK---------CKFLHSWTVG  137 (308)
Q Consensus        71 ~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~g~~---------d~~i~iwd~~  137 (308)
                      .++|+|+|.++..+.|++|++||+.+++.... ...+..   .+..+.|+|+|.. ++++.         ++.|++||+.
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTI-LSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEEEEESSSCCEEEE-ECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEE-EccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            57999999664445699999999988764311 111222   2778999999976 55554         6899999999


Q ss_pred             CCceee--eEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCC--C-------------------ee
Q 021744          138 DGFKLL--TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG--G-------------------EV  194 (308)
Q Consensus       138 ~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~--~-------------------~v  194 (308)
                      ++ +.+  ..+   ...+..++|+|||+.|+.+. ++.|++||+.+++........  .                   ..
T Consensus        99 ~g-~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~  173 (719)
T 1z68_A           99 NG-EFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA  173 (719)
T ss_dssp             TT-EECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred             CC-ccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence            88 442  222   25688999999999999886 789999999988765433211  1                   12


Q ss_pred             EEEEcCCCEEEEEc-CC----------------------------------cEEEEEcCCCcee---e------eeCCCC
Q 021744          195 GCMISEGPWIFIGV-TN----------------------------------FVKAWNTQTNTDL---S------LSGPVG  230 (308)
Q Consensus       195 ~~~~~~~~~l~~~~-d~----------------------------------~i~~wd~~~~~~~---~------~~~~~~  230 (308)
                      ..++|||++|+.++ |.                                  .|++||+.+++..   .      +.+|..
T Consensus       174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  253 (719)
T 1z68_A          174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY  253 (719)
T ss_dssp             EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred             EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence            34578999998654 31                                  7889999988642   2      235777


Q ss_pred             CEEEEEEeCC--EEEEEcC--C--CeEEEEE----cCCCCcccccceec----cccCCCeE-----E-EEecCCCeEEE-
Q 021744          231 QVYAMAVGND--LLFAGTQ--D--GAILAWK----FNVTTNCFEPAASL----KVHTDSNR-----A-HFSRDVTSLLG-  289 (308)
Q Consensus       231 ~v~~~~~~~~--~l~~g~~--d--g~i~iwd----~~~~~~~~~~~~~~----~~~~~~v~-----~-~~s~d~~~l~~-  289 (308)
                      .+.+++|+||  ++++...  +  ..|.+||    +.++    +....+    ..|...+.     . .|+|||+.++. 
T Consensus       254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  329 (719)
T 1z68_A          254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW----DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI  329 (719)
T ss_dssp             EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE----ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred             eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC----ceEEEEecccccCCceEccccCCccEECCCCCeEEEE
Confidence            8999999999  4444332  2  2488889    6665    333444    35666665     6 99999996653 


Q ss_pred             ee----ceEEEEee
Q 021744          290 SV----SFIMFIGQ  299 (308)
Q Consensus       290 s~----s~~i~~~~  299 (308)
                      +.    ...||++.
T Consensus       330 ~~~~~g~~~l~~~~  343 (719)
T 1z68_A          330 FSDKDGYKHIHYIK  343 (719)
T ss_dssp             EECTTSCEEEEEES
T ss_pred             EEccCCceEEEEEE
Confidence            22    34666654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.74  E-value=2.1e-15  Score=128.17  Aligned_cols=209  Identities=14%  Similarity=0.121  Sum_probs=136.0

Q ss_pred             ccCCCcEEEEECCC--CCCcccccceeeeeeeeeeeecCCceEEeeC---CCeEEEEEcCCCc-eeeeEeeCcccceEEE
Q 021744           83 NNFNNHSNNYRAGN--SKNSNINNRAVIKTDILCRNWVQGNCMYGEK---CKFLHSWTVGDGF-KLLTQLEGHQKVVSGI  156 (308)
Q Consensus        83 ~~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---d~~i~iwd~~~~~-~~~~~~~~h~~~v~~~  156 (308)
                      ++.++.|.+|+++.  ++........+...+..+.++|++.+++++.   ++.|++|++.++. +.+..+..+...+..+
T Consensus        12 ~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~   91 (347)
T 3hfq_A           12 KKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV   91 (347)
T ss_dssp             SSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred             CCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence            34567788887753  4332212233334477789999997644433   6899999997662 2444555577888999


Q ss_pred             EEeCCCCEEEEee-CCCcEEEEeCCC-C--eEEEEEeCCC----------eeE--EEEcCCCEEEEEc-CCcEEEEEcC-
Q 021744          157 TLPSGSDKLYSGS-KDETVRVWDCAS-G--QCAGVINLGG----------EVG--CMISEGPWIFIGV-TNFVKAWNTQ-  218 (308)
Q Consensus       157 ~~~~~~~~l~s~s-~dg~v~~wd~~~-~--~~~~~~~~~~----------~v~--~~~~~~~~l~~~~-d~~i~~wd~~-  218 (308)
                      +|+|++++|++++ .++.|.+|++.. +  +.+..+....          .+.  .+.++++++++.. ++.|.+||+. 
T Consensus        92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~  171 (347)
T 3hfq_A           92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD  171 (347)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence            9999999888887 689999999963 3  3333343221          133  3468888555555 7799999998 


Q ss_pred             CCcee---eeeCC-CCCEEEEEEeCC--E-EEEEcCCCeEEEEEcCCCCcccccceeccccC------CCeEE-EEecCC
Q 021744          219 TNTDL---SLSGP-VGQVYAMAVGND--L-LFAGTQDGAILAWKFNVTTNCFEPAASLKVHT------DSNRA-HFSRDV  284 (308)
Q Consensus       219 ~~~~~---~~~~~-~~~v~~~~~~~~--~-l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~------~~v~~-~~s~d~  284 (308)
                      +++..   .+..+ ...+..++|+|+  + ++++..++.|.+|++.........+..+....      ..+.. +|+|||
T Consensus       172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG  251 (347)
T 3hfq_A          172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG  251 (347)
T ss_dssp             TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS
T ss_pred             CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC
Confidence            55443   22222 336788999999  4 44567789999999885222122233333222      34666 999999


Q ss_pred             CeEEEee
Q 021744          285 TSLLGSV  291 (308)
Q Consensus       285 ~~l~~s~  291 (308)
                      ++|+++.
T Consensus       252 ~~l~v~~  258 (347)
T 3hfq_A          252 HFLYVSN  258 (347)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEe
Confidence            9886544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.72  E-value=1.3e-15  Score=142.55  Aligned_cols=258  Identities=8%  Similarity=-0.087  Sum_probs=159.0

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCC---------CcEEEEEC
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFN---------NHSNNYRA   94 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d---------~~i~vwd~   94 (308)
                      .+++++  |++|++||..++.   +..+....    ....+...  .++|||||+. +.++.+         +.+.+||+
T Consensus        29 ~~~~~~--~~~i~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~   99 (740)
T 4a5s_A           29 EYLYKQ--ENNILVFNAEYGN---SSVFLENS----TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (740)
T ss_dssp             EEEEEE--TTEEEEEETTTCC---EEEEECTT----TTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             cEEEEc--CCcEEEEECCCCc---eEEEEech----hhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence            566665  9999999998872   11111100    01111111  3789999999 777766         45679999


Q ss_pred             CCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeee-EeeCcccce-----------------EEE
Q 021744           95 GNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLT-QLEGHQKVV-----------------SGI  156 (308)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~-~~~~h~~~v-----------------~~~  156 (308)
                      ++++..  .+..+...+....|+|+|..++-..++.|++|++.++. ..+ +..++...+                 ..+
T Consensus       100 ~~~~~~--~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~-~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~  176 (740)
T 4a5s_A          100 NKRQLI--TEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLP-SYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL  176 (740)
T ss_dssp             TTTEEC--CSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSC-CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred             CCCcEE--EcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCc-eEEEcCCCCccceecCcccccccchhcCCCcce
Confidence            988654  33444456888999999987444468999999998873 322 223333322                 358


Q ss_pred             EEeCCCCEEEEeeCCC------------------------------------cEEEEeCCC---Ce--EEEEEe------
Q 021744          157 TLPSGSDKLYSGSKDE------------------------------------TVRVWDCAS---GQ--CAGVIN------  189 (308)
Q Consensus       157 ~~~~~~~~l~s~s~dg------------------------------------~v~~wd~~~---~~--~~~~~~------  189 (308)
                      .|+|||++|+..+.|.                                    +|++||+.+   ++  ....+.      
T Consensus       177 ~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~  256 (740)
T 4a5s_A          177 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASML  256 (740)
T ss_dssp             EECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHH
T ss_pred             EECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCC
Confidence            9999999998875332                                    478899988   73  222332      


Q ss_pred             -CCCeeEE--EEcCCCEEEEEc-----CCcEEEEEcCCCc----ee---ee--eCCCCCEE-----EEEEeCC--EEE-E
Q 021744          190 -LGGEVGC--MISEGPWIFIGV-----TNFVKAWNTQTNT----DL---SL--SGPVGQVY-----AMAVGND--LLF-A  244 (308)
Q Consensus       190 -~~~~v~~--~~~~~~~l~~~~-----d~~i~~wd~~~~~----~~---~~--~~~~~~v~-----~~~~~~~--~l~-~  244 (308)
                       +...+..  ++|++++++...     +..|.+||+.+++    +.   .+  ..+...+.     ...|+||  .++ .
T Consensus       257 ~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~  336 (740)
T 4a5s_A          257 IGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKI  336 (740)
T ss_dssp             TSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEE
T ss_pred             CCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEE
Confidence             2223333  368888666432     2379999999987    22   22  44555544     7889999  444 4


Q ss_pred             Ec-CCC--eEEEEEcCCCCcccccceeccccCCCeEEEEecCCCeEEEee-c-------eEEEEeecC
Q 021744          245 GT-QDG--AILAWKFNVTTNCFEPAASLKVHTDSNRAHFSRDVTSLLGSV-S-------FIMFIGQNN  301 (308)
Q Consensus       245 g~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~s~d~~~l~~s~-s-------~~i~~~~~~  301 (308)
                      .+ .+|  .|++||+..+     ....+......+...+.+|++.++..+ .       ..||....+
T Consensus       337 ~s~~~G~~~l~~~~~~~~-----~~~~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~  399 (740)
T 4a5s_A          337 ISNEEGYRHICYFQIDKK-----DCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLI  399 (740)
T ss_dssp             EECTTSCEEEEEEETTCS-----SCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETT
T ss_pred             EEcCCCceEEEEEECCCC-----ceEecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECC
Confidence            44 444  5788888764     233444444455543445576665333 2       477776543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.72  E-value=1.9e-15  Score=130.27  Aligned_cols=257  Identities=7%  Similarity=-0.004  Sum_probs=158.2

Q ss_pred             CCceEEecC-CC--eEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCC
Q 021744           26 GGLSTADTR-QK--VCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKN   99 (308)
Q Consensus        26 ~~~~~s~s~-d~--~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~   99 (308)
                      +..|+..+. ++  .|.+||..+++           ... ...++...  ..+|+|||+. +.++.++.|++||+.+++.
T Consensus        47 g~~l~~~~~~~g~~~l~~~d~~~g~-----------~~~-lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~  114 (388)
T 3pe7_A           47 GSKLLFGGAFDGPWNYYLLDLNTQV-----------ATQ-LTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE  114 (388)
T ss_dssp             SCEEEEEECTTSSCEEEEEETTTCE-----------EEE-CCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred             CCEEEEEEcCCCCceEEEEeCCCCc-----------eEE-eeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence            566777666 66  47778877661           111 11122222  4689999999 8888899999999988754


Q ss_pred             cccccceeeeee--eeeeeecCCceEE-----------------------eeCCCeEEEEEcCCCceeeeEeeCcccceE
Q 021744          100 SNINNRAVIKTD--ILCRNWVQGNCMY-----------------------GEKCKFLHSWTVGDGFKLLTQLEGHQKVVS  154 (308)
Q Consensus       100 ~~~~~~~~~~~~--~~~~~~~~~~~~~-----------------------g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~  154 (308)
                      .... ..+...+  ....+++++..+.                       ...+..|++||+.++ + ...+..+...+.
T Consensus       115 ~~~~-~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-~-~~~l~~~~~~~~  191 (388)
T 3pe7_A          115 NVVY-QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG-E-STVILQENQWLG  191 (388)
T ss_dssp             EEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC-C-EEEEEEESSCEE
T ss_pred             eeee-echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC-c-eEEeecCCcccc
Confidence            3211 1111112  1223467776543                       234578999999988 3 344555677899


Q ss_pred             EEEEeC-CCCEEEEeeCC------CcEEEEeCCCCeEEEEEeCC--CeeE--EEEcCCCEEE-EEc-CC----cEEEEEc
Q 021744          155 GITLPS-GSDKLYSGSKD------ETVRVWDCASGQCAGVINLG--GEVG--CMISEGPWIF-IGV-TN----FVKAWNT  217 (308)
Q Consensus       155 ~~~~~~-~~~~l~s~s~d------g~v~~wd~~~~~~~~~~~~~--~~v~--~~~~~~~~l~-~~~-d~----~i~~wd~  217 (308)
                      .++|+| +++.|+.++.+      ..|.++|+..++........  ..+.  .++|+++.|+ ++. ++    .|++||+
T Consensus       192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  271 (388)
T 3pe7_A          192 HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADP  271 (388)
T ss_dssp             EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECT
T ss_pred             ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEec
Confidence            999999 99988877653      37888888765543333332  1233  3468888765 333 22    3999999


Q ss_pred             CCCceeeeeCCCCC------EEEEEEeCC--EEEEE---------cCCCeEEEEEcCCCCcccccceeccccCC------
Q 021744          218 QTNTDLSLSGPVGQ------VYAMAVGND--LLFAG---------TQDGAILAWKFNVTTNCFEPAASLKVHTD------  274 (308)
Q Consensus       218 ~~~~~~~~~~~~~~------v~~~~~~~~--~l~~g---------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------  274 (308)
                      .+++...+......      ...+.|+|+  .|+..         ..+..|++||+.++.     +..+..+..      
T Consensus       272 ~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~-----~~~l~~~~~~~~~~~  346 (388)
T 3pe7_A          272 ETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT-----QHRVARHDTSWKVFE  346 (388)
T ss_dssp             TTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE-----EEEEEECCCCCCCBT
T ss_pred             CCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc-----eEEeccccCcccccc
Confidence            99876533221110      111368888  44432         556789999999852     234444444      


Q ss_pred             -----CeEE-EEecCCCeEEEee----ceEEEEeecCc
Q 021744          275 -----SNRA-HFSRDVTSLLGSV----SFIMFIGQNNK  302 (308)
Q Consensus       275 -----~v~~-~~s~d~~~l~~s~----s~~i~~~~~~~  302 (308)
                           .+.. +|+|||+.|+.++    ...||...-..
T Consensus       347 ~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~  384 (388)
T 3pe7_A          347 GDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE  384 (388)
T ss_dssp             TBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred             cccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence                 4566 9999999888443    45677665443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.72  E-value=3.9e-16  Score=146.03  Aligned_cols=224  Identities=10%  Similarity=-0.035  Sum_probs=151.7

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeee---e--eeeeeecCCce-EEeeCC---------CeEEEE
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKT---D--ILCRNWVQGNC-MYGEKC---------KFLHSW  134 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~-~~g~~d---------~~i~iw  134 (308)
                      .++|+|+|.+ +++  |++|++||+.+++.... ...+...   +  ....++|+|.. ++++.+         +.+.+|
T Consensus        21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~   97 (740)
T 4a5s_A           21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVF-LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (740)
T ss_dssp             CEEECSSSEEEEEE--TTEEEEEETTTCCEEEE-ECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             ccEECCCCcEEEEc--CCcEEEEECCCCceEEE-EechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence            5899999988 665  99999999988864321 1112111   2  23678999976 555554         667899


Q ss_pred             EcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCC--Cee------------------
Q 021744          135 TVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG--GEV------------------  194 (308)
Q Consensus       135 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~--~~v------------------  194 (308)
                      |+.++ +. ..+..|...+...+|+|||+.|+.+. |+.|++||+.+++..+.....  ..+                  
T Consensus        98 d~~~~-~~-~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~  174 (740)
T 4a5s_A           98 DLNKR-QL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS  174 (740)
T ss_dssp             ETTTT-EE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred             ECCCC-cE-EEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCc
Confidence            99998 43 35677888999999999999998884 689999999988755422211  111                  


Q ss_pred             -EEEEcCCCEEEEEc-C-C-----------------------------------cEEEEEcCC---C---ceeeee----
Q 021744          195 -GCMISEGPWIFIGV-T-N-----------------------------------FVKAWNTQT---N---TDLSLS----  226 (308)
Q Consensus       195 -~~~~~~~~~l~~~~-d-~-----------------------------------~i~~wd~~~---~---~~~~~~----  226 (308)
                       ..++|||+.|+... | .                                   +|++||+.+   +   +...+.    
T Consensus       175 ~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~  254 (740)
T 4a5s_A          175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS  254 (740)
T ss_dssp             CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH
T ss_pred             ceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc
Confidence             34578999888542 1 1                                   578899998   7   444444    


Q ss_pred             --CCCCCEEEEEEeCC--EEEEEc----CCCeEEEEEcCCCCcc--cccceec--cccCCCeE-----E-EEecCCCeEE
Q 021744          227 --GPVGQVYAMAVGND--LLFAGT----QDGAILAWKFNVTTNC--FEPAASL--KVHTDSNR-----A-HFSRDVTSLL  288 (308)
Q Consensus       227 --~~~~~v~~~~~~~~--~l~~g~----~dg~i~iwd~~~~~~~--~~~~~~~--~~~~~~v~-----~-~~s~d~~~l~  288 (308)
                        ++...+..++|+||  .++...    .+..|++||+.+++..  ...+..+  ..|...+.     . +|+|||+.++
T Consensus       255 ~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~  334 (740)
T 4a5s_A          255 MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFY  334 (740)
T ss_dssp             HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEE
T ss_pred             CCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEE
Confidence              37778999999999  344332    2347999999987310  0112222  34555554     6 9999999776


Q ss_pred             -Eee----ceEEEEeec
Q 021744          289 -GSV----SFIMFIGQN  300 (308)
Q Consensus       289 -~s~----s~~i~~~~~  300 (308)
                       ...    ...||++..
T Consensus       335 ~~~s~~~G~~~l~~~~~  351 (740)
T 4a5s_A          335 KIISNEEGYRHICYFQI  351 (740)
T ss_dssp             EEEECTTSCEEEEEEET
T ss_pred             EEEEcCCCceEEEEEEC
Confidence             332    366777653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.72  E-value=3.3e-14  Score=121.47  Aligned_cols=222  Identities=9%  Similarity=0.020  Sum_probs=138.2

Q ss_pred             CCceEEecCC----CeEEEeecCCCCCCCCCcccccCCCCCCccccc-cc-eeEEecCCCe--eeccCCCcEEEEECCCC
Q 021744           26 GGLSTADTRQ----KVCNYWRAGKCNRFPCPYLHRELPLPPAATANG-AA-AKRFANNTWG--RNNNFNNHSNNYRAGNS   97 (308)
Q Consensus        26 ~~~~~s~s~d----~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~-~i~~s~~g~~--~s~~~d~~i~vwd~~~~   97 (308)
                      +.+|++++.+    +.|++|+...... ....+.      . ...+. .. .+++  +++.  ++...+++|.+|++...
T Consensus        61 g~~l~~~~~~~~~~~~v~~~~~~~~~g-~~~~~~------~-~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~  130 (361)
T 3scy_A           61 GKFVYSVNEFSKDQAAVSAFAFDKEKG-TLHLLN------T-QKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQD  130 (361)
T ss_dssp             SSEEEEEECCSSTTCEEEEEEEETTTT-EEEEEE------E-EECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTT
T ss_pred             CCEEEEEEccCCCCCcEEEEEEeCCCC-cEEEee------E-eccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCC
Confidence            5667777765    7999998764200 000000      0 00111 11 4555  7877  44446899999999654


Q ss_pred             CCcccccc-------------eeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCce------e------eeEeeCcc
Q 021744           98 KNSNINNR-------------AVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFK------L------LTQLEGHQ  150 (308)
Q Consensus        98 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~------~------~~~~~~h~  150 (308)
                      ..+.....             .+...+..+.++|++..  ++...++.|++|++.....      .      ......+.
T Consensus       131 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  210 (361)
T 3scy_A          131 GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPG  210 (361)
T ss_dssp             SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTT
T ss_pred             CcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCC
Confidence            33221111             01112466899999974  4444689999999875521      1      11122344


Q ss_pred             cceEEEEEeCCCCEEEEee-CCCcEEEEeCCCCeEE--EEEeC-C---Cee--EEEEcCCCEEEEEc-C--CcEEEEEcC
Q 021744          151 KVVSGITLPSGSDKLYSGS-KDETVRVWDCASGQCA--GVINL-G---GEV--GCMISEGPWIFIGV-T--NFVKAWNTQ  218 (308)
Q Consensus       151 ~~v~~~~~~~~~~~l~s~s-~dg~v~~wd~~~~~~~--~~~~~-~---~~v--~~~~~~~~~l~~~~-d--~~i~~wd~~  218 (308)
                      ..+..++|+|++++++.++ .++.|.+|++.+++..  ..+.. .   ...  .++.+++++|+++. +  +.|.+|++.
T Consensus       211 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          211 SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            5678999999999887766 6899999999977543  33331 1   112  23468999887654 4  789999996


Q ss_pred             --CCcee---eeeCCCCCEEEEEEeCC--EEEEEc-CCCeEEEEEcCC
Q 021744          219 --TNTDL---SLSGPVGQVYAMAVGND--LLFAGT-QDGAILAWKFNV  258 (308)
Q Consensus       219 --~~~~~---~~~~~~~~v~~~~~~~~--~l~~g~-~dg~i~iwd~~~  258 (308)
                        +++..   .+.. ...+..++|+|+  +|++++ .++.|.+|++..
T Consensus       291 ~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          291 ETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             TTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred             CCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence              44432   3333 456789999999  666665 679999977654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.70  E-value=7.3e-15  Score=125.94  Aligned_cols=215  Identities=12%  Similarity=0.139  Sum_probs=141.3

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECC-CCCCcccccceee--eeeeeeeeecCCc--eE-Eee-------------CCCe
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAG-NSKNSNINNRAVI--KTDILCRNWVQGN--CM-YGE-------------KCKF  130 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~-~g~-------------~d~~  130 (308)
                      .++++|+|++ ++++.+ +|.+|+++ +++...  ...+.  ..+..+.++|++.  ++ ++.             .++.
T Consensus        44 ~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~--~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~  120 (365)
T 1jof_A           44 WMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH--EASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGY  120 (365)
T ss_dssp             EEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE--EEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCE
T ss_pred             EEEECCCCCEEEEEccc-eEEEEEECCCCCEEE--eeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCce
Confidence            6899999998 777777 99999996 554321  11111  2255678899997  33 332             6899


Q ss_pred             EEEEEcCC-CceeeeEee----CcccceEEEEEeCCCCEEEEeeC-CCcEEEEeCC-CCeEE--EEEeC---CCeeE--E
Q 021744          131 LHSWTVGD-GFKLLTQLE----GHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCA-SGQCA--GVINL---GGEVG--C  196 (308)
Q Consensus       131 i~iwd~~~-~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~s~-dg~v~~wd~~-~~~~~--~~~~~---~~~v~--~  196 (308)
                      +.+|++.. + +....+.    .+...+.+++|+|++++++++.. ++.|++||+. +++..  ..+..   .....  .
T Consensus       121 v~v~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~  199 (365)
T 1jof_A          121 GNVFSVSETG-KLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVA  199 (365)
T ss_dssp             EEEEEECTTC-CEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEE
T ss_pred             EEEEccCCCC-cCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeE
Confidence            99999974 4 3433333    24567899999999998877654 6799999998 67643  33431   33343  3


Q ss_pred             EEcCCCEEEEEc--CCcEEEEEcC--CCcee----eee-------CCCC------CEEEEE-EeCC--EEEEEcC-CC--
Q 021744          197 MISEGPWIFIGV--TNFVKAWNTQ--TNTDL----SLS-------GPVG------QVYAMA-VGND--LLFAGTQ-DG--  249 (308)
Q Consensus       197 ~~~~~~~l~~~~--d~~i~~wd~~--~~~~~----~~~-------~~~~------~v~~~~-~~~~--~l~~g~~-dg--  249 (308)
                      +.+++++++++.  ++.|.+|++.  +++..    .+.       ++..      .+..++ |+||  +|+++.. ++  
T Consensus       200 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~  279 (365)
T 1jof_A          200 MHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFE  279 (365)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTT
T ss_pred             ECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCC
Confidence            468899887654  6799999865  45431    121       1122      588999 9999  6655543 23  


Q ss_pred             ---eEEEEEcC-CCCcccccce-eccccCCCeEE-EEec---CCCeEEEee
Q 021744          250 ---AILAWKFN-VTTNCFEPAA-SLKVHTDSNRA-HFSR---DVTSLLGSV  291 (308)
Q Consensus       250 ---~i~iwd~~-~~~~~~~~~~-~~~~~~~~v~~-~~s~---d~~~l~~s~  291 (308)
                         .|.+|++. +++  ...+. ....+...... +|+|   ||++|+++.
T Consensus       280 ~~~~i~v~~~~~~g~--~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~  328 (365)
T 1jof_A          280 LQGYIAGFKLRDCGS--IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD  328 (365)
T ss_dssp             SCCEEEEEEECTTSC--EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred             CCCeEEEEEECCCCC--EEEeeeeeecCCCCcccceecCCCcCCCEEEEEE
Confidence               89999996 331  11111 13334444555 8999   899988665

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.67  E-value=1.2e-13  Score=116.63  Aligned_cols=223  Identities=10%  Similarity=0.028  Sum_probs=153.9

Q ss_pred             eeEEecCCCe-eeccCC------------------------CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EE
Q 021744           71 AKRFANNTWG-RNNNFN------------------------NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MY  124 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d------------------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  124 (308)
                      .++++|+|+. ++...+                        ++|.+||.++++........+-..+..+++.+++.+ ++
T Consensus        28 ~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~  107 (329)
T 3fvz_A           28 GVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVT  107 (329)
T ss_dssp             EEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEE
T ss_pred             EEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEE
Confidence            7999999998 777766                        479999998776543222222234677888899877 66


Q ss_pred             eeCCCeEEEEEcCCCceeeeEe---------eCcccceEEEEEeC-CCCEEEEee-CCCcEEEEeCCCCeEEEEEeCCC-
Q 021744          125 GEKCKFLHSWTVGDGFKLLTQL---------EGHQKVVSGITLPS-GSDKLYSGS-KDETVRVWDCASGQCAGVINLGG-  192 (308)
Q Consensus       125 g~~d~~i~iwd~~~~~~~~~~~---------~~h~~~v~~~~~~~-~~~~l~s~s-~dg~v~~wd~~~~~~~~~~~~~~-  192 (308)
                      ...++.|++|+.......+..+         .++......++++| ++.++++.+ .++.|++|| .+++.+..+.... 
T Consensus       108 d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~  186 (329)
T 3fvz_A          108 DVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESS  186 (329)
T ss_dssp             ETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECC
T ss_pred             ECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCC
Confidence            7778999999986542245555         24455789999999 788888876 689999999 5677777764111 


Q ss_pred             -------e---eEE--EEcC-CCEEEEEc-CCcEEEEEcCCCcee-ee--eCCCCCEEEEEEeCC-EEEEEc-------C
Q 021744          193 -------E---VGC--MISE-GPWIFIGV-TNFVKAWNTQTNTDL-SL--SGPVGQVYAMAVGND-LLFAGT-------Q  247 (308)
Q Consensus       193 -------~---v~~--~~~~-~~~l~~~~-d~~i~~wd~~~~~~~-~~--~~~~~~v~~~~~~~~-~l~~g~-------~  247 (308)
                             .   ...  +.++ +.++++.. ++.|++||..+++.+ .+  ..+...+.+++++|. .+.+.+       .
T Consensus       187 ~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~  266 (329)
T 3fvz_A          187 GSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQE  266 (329)
T ss_dssp             SSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSC
T ss_pred             CCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCC
Confidence                   1   223  3466 55555555 789999999988776 33  345668899999997 333333       3


Q ss_pred             CCeEEEEEcCCCCcccccceec---cccCCCeEE-EEecCCCeEEEee-ceEEEEe
Q 021744          248 DGAILAWKFNVTTNCFEPAASL---KVHTDSNRA-HFSRDVTSLLGSV-SFIMFIG  298 (308)
Q Consensus       248 dg~i~iwd~~~~~~~~~~~~~~---~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~  298 (308)
                      +..|++||+.++    +.+..+   ..+...... +++|+|.++++.. ...|+.+
T Consensus       267 ~~~v~~~~~~~g----~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~  318 (329)
T 3fvz_A          267 PVQGFVMNFSSG----EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKF  318 (329)
T ss_dssp             CCCEEEEETTTC----CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEE
T ss_pred             CcEEEEEEcCCC----eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEE
Confidence            458999999887    555555   355666777 9999995555433 4344443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.65  E-value=5.4e-14  Score=120.36  Aligned_cols=232  Identities=10%  Similarity=0.100  Sum_probs=142.7

Q ss_pred             CCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eecc----------CCCcEEEEECCCCCCccc
Q 021744           34 RQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNN----------FNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        34 ~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~----------~d~~i~vwd~~~~~~~~~  102 (308)
                      .|++|++||..++.     .+ ...+.     +... .++|+|+|++ +++.          .+++|.+||..+.+....
T Consensus        29 ~d~~v~v~D~~t~~-----~~-~~i~~-----g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~   96 (361)
T 2oiz_A           29 TESRVHVYDYTNGK-----FL-GMVPT-----AFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKE   96 (361)
T ss_dssp             GGCEEEEEETTTCC-----EE-EEEEC-----CEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEE
T ss_pred             ccCeEEEEECCCCe-----EE-EEecC-----CCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEE
Confidence            47899999987761     11 11111     1112 5899999998 5543          367899999987665432


Q ss_pred             ccce-----eeeeeeeeeeecCCceE-Eee-C-CCeEEEEEcCCCceeeeE-eeCcccceEEEEEeCCC-CEEEEeeCC-
Q 021744          103 NNRA-----VIKTDILCRNWVQGNCM-YGE-K-CKFLHSWTVGDGFKLLTQ-LEGHQKVVSGITLPSGS-DKLYSGSKD-  171 (308)
Q Consensus       103 ~~~~-----~~~~~~~~~~~~~~~~~-~g~-~-d~~i~iwd~~~~~~~~~~-~~~h~~~v~~~~~~~~~-~~l~s~s~d-  171 (308)
                      ....     +......+.++|+|..+ ++. . ++.|.+||+.++ +.+.. +.. .. ...+.+.|++ ..+++.+.| 
T Consensus        97 i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~-~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg  173 (361)
T 2oiz_A           97 ISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG-DYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDG  173 (361)
T ss_dssp             EEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT-EEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTS
T ss_pred             EEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC-cEEEEEecC-CC-cceeEEcCCCCeeEEEECCCC
Confidence            2111     12336678899999773 333 2 689999999988 66666 431 11 1112233322 233333334 


Q ss_pred             -----------------------------------------------CcEEEEeCCCCe--EEEEEeCC-----------
Q 021744          172 -----------------------------------------------ETVRVWDCASGQ--CAGVINLG-----------  191 (308)
Q Consensus       172 -----------------------------------------------g~v~~wd~~~~~--~~~~~~~~-----------  191 (308)
                                                                     +.|.++|+...+  ....+...           
T Consensus       174 ~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p  253 (361)
T 2oiz_A          174 GLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVP  253 (361)
T ss_dssp             SEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEE
T ss_pred             cEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccccc
Confidence                                                           444444443321  11111100           


Q ss_pred             --CeeEEEEcCCCEEEEEc------------CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEE
Q 021744          192 --GEVGCMISEGPWIFIGV------------TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAW  254 (308)
Q Consensus       192 --~~v~~~~~~~~~l~~~~------------d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iw  254 (308)
                        .....+.++++.+++..            .+.|.+||+.+++.+ ++..+.  +.+++|+|+  +|++++. +.|.+|
T Consensus       254 ~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~  330 (361)
T 2oiz_A          254 GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVY  330 (361)
T ss_dssp             CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEE
T ss_pred             CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEE
Confidence              01134467777766532            247999999999988 666665  899999999  7777776 999999


Q ss_pred             EcCCCCcccccceeccccCCCeEE-EEecCCC
Q 021744          255 KFNVTTNCFEPAASLKVHTDSNRA-HFSRDVT  285 (308)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~  285 (308)
                      |..++..  +.+.++......... +++|+|+
T Consensus       331 D~~t~~l--~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          331 DISQPEP--KLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             ECSSSSC--EEEEEETTSCSSEEEEEECCCSC
T ss_pred             ECCCCcc--eeeEEeccCCCCcEEEEecCCCC
Confidence            9998632  556666555666666 9999985

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.64  E-value=2.1e-13  Score=112.61  Aligned_cols=223  Identities=11%  Similarity=0.093  Sum_probs=146.1

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEe-cCCCe-eeccC-CCcEEEEECCCCCCc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFA-NNTWG-RNNNF-NNHSNNYRAGNSKNS  100 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s-~~g~~-~s~~~-d~~i~vwd~~~~~~~  100 (308)
                      +.++++.+.++.|++|+....      .+.. .+......++...  .+++. +++.. ++... ++.|++||. +++..
T Consensus        41 g~l~v~~~~~~~i~~~d~~g~------~~~~-~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g~~~  112 (286)
T 1q7f_A           41 NDIIVADTNNHRIQIFDKEGR------FKFQ-FGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFV  112 (286)
T ss_dssp             CCEEEEEGGGTEEEEECTTSC------EEEE-ECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEE
T ss_pred             CCEEEEECCCCEEEEECCCCc------EEEE-ecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CCcEE
Confidence            567888888999999997632      1110 1111111122222  78884 67777 65543 889999994 44433


Q ss_pred             ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEee--CcccceEEEEEeCCCCEEEEeeCCCcEEEE
Q 021744          101 NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLE--GHQKVVSGITLPSGSDKLYSGSKDETVRVW  177 (308)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~dg~v~~w  177 (308)
                      ..........+..+.+.+++.. ++...++.|++||...  +.+..+.  ++...+..++++++++++++...++.|++|
T Consensus       113 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~  190 (286)
T 1q7f_A          113 RKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG--NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVF  190 (286)
T ss_dssp             EEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS--CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEE
T ss_pred             EEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC--CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEE
Confidence            2111112234677888888877 5556788999999653  3444443  345678999999999888888889999999


Q ss_pred             eCCCCeEEEEEeCC---CeeEEE--EcCCCEEEEEc-CC-cEEEEEcCCCceeeeeCCC--CCEEEEEEeCC-EEEEEcC
Q 021744          178 DCASGQCAGVINLG---GEVGCM--ISEGPWIFIGV-TN-FVKAWNTQTNTDLSLSGPV--GQVYAMAVGND-LLFAGTQ  247 (308)
Q Consensus       178 d~~~~~~~~~~~~~---~~v~~~--~~~~~~l~~~~-d~-~i~~wd~~~~~~~~~~~~~--~~v~~~~~~~~-~l~~g~~  247 (308)
                      |.. ++.+..+...   .....+  .++++++++.. ++ .|.+||........+..+.  ..+.+++++|+ .++.++.
T Consensus       191 ~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~  269 (286)
T 1q7f_A          191 NYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLASK  269 (286)
T ss_dssp             ETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEET
T ss_pred             cCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEECC
Confidence            974 5666666532   233333  46788877776 55 9999996544333444332  34789999999 4444467


Q ss_pred             CCeEEEEEcCCC
Q 021744          248 DGAILAWKFNVT  259 (308)
Q Consensus       248 dg~i~iwd~~~~  259 (308)
                      ++.|++|++...
T Consensus       270 ~~~v~v~~~~~~  281 (286)
T 1q7f_A          270 DYRLYIYRYVQL  281 (286)
T ss_dssp             TTEEEEEECSCC
T ss_pred             CCeEEEEEcccc
Confidence            999999998764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.64  E-value=8.4e-14  Score=117.64  Aligned_cols=187  Identities=7%  Similarity=0.031  Sum_probs=133.5

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCC-Cccccc--------ceeeeeeeeeeeec-CCce-EEee-CCCeEEEEEcC
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSK-NSNINN--------RAVIKTDILCRNWV-QGNC-MYGE-KCKFLHSWTVG  137 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~-~~~~~~--------~~~~~~~~~~~~~~-~~~~-~~g~-~d~~i~iwd~~  137 (308)
                      .++++|+|+. ++...++.|++||.+... .+....        ..+...+..+++.+ ++.+ ++.+ .++.|++|+. 
T Consensus        95 gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-  173 (329)
T 3fvz_A           95 GLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-  173 (329)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-
T ss_pred             EEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-
Confidence            7999999999 998899999999985442 111110        11222467788998 6776 5554 5899999994 


Q ss_pred             CCceeeeEeeC----------cccceEEEEEeCC-CCEEEEeeCCCcEEEEeCCCCeEEEEEe---CCCeeEEE-EcCCC
Q 021744          138 DGFKLLTQLEG----------HQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVIN---LGGEVGCM-ISEGP  202 (308)
Q Consensus       138 ~~~~~~~~~~~----------h~~~v~~~~~~~~-~~~l~s~s~dg~v~~wd~~~~~~~~~~~---~~~~v~~~-~~~~~  202 (308)
                      ++ +.+..+..          +-.....++++|+ +.++++...++.|++||..+++.+..+.   ....+..+ +.++.
T Consensus       174 ~g-~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~  252 (329)
T 3fvz_A          174 SG-KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGF  252 (329)
T ss_dssp             TS-CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTE
T ss_pred             CC-CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCE
Confidence            44 44555532          2344899999998 6777888889999999999899988885   22333333 22232


Q ss_pred             EEEE-------Ec-CCcEEEEEcCCCceee-e---eCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744          203 WIFI-------GV-TNFVKAWNTQTNTDLS-L---SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       203 ~l~~-------~~-d~~i~~wd~~~~~~~~-~---~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~  259 (308)
                      .+.+       .. +..|++||..+++.+. +   ..+...+..++++|+  ++++...++.|++|++...
T Consensus       253 ~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          253 LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence            2222       22 4589999999998873 3   356678999999999  7778888999999998753

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.64  E-value=4e-13  Score=110.92  Aligned_cols=220  Identities=10%  Similarity=0.080  Sum_probs=148.5

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCccccc-----ceeeeeeeeeeee-cCCceEEee-C-CCeEEEEEcCCCce
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN-----RAVIKTDILCRNW-VQGNCMYGE-K-CKFLHSWTVGDGFK  141 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~g~-~-d~~i~iwd~~~~~~  141 (308)
                      .++++|++.. ++...++.|++||.+ ++......     ..+...+..+++. +++..+.+. . ++.|++|| .++ +
T Consensus        34 ~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g-~  110 (286)
T 1q7f_A           34 GVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYG-Q  110 (286)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTS-C
T ss_pred             eEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCC-c
Confidence            7899999998 888889999999986 33221111     1122335667774 667664444 2 89999999 455 4


Q ss_pred             eeeEee-CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC---CCeeEEE--EcCCCEEEEEc-CCcEEE
Q 021744          142 LLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL---GGEVGCM--ISEGPWIFIGV-TNFVKA  214 (308)
Q Consensus       142 ~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~---~~~v~~~--~~~~~~l~~~~-d~~i~~  214 (308)
                      .+..+. .+...+..++++++++++++...++.|.+||.. ++.+..+..   ......+  .++++++++.. ++.|++
T Consensus       111 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~  189 (286)
T 1q7f_A          111 FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKV  189 (286)
T ss_dssp             EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEE
T ss_pred             EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEE
Confidence            455553 344678999999999988888888999999964 666666642   2234444  46677666665 889999


Q ss_pred             EEcCCCceeeeeCC--CCCEEEEEEeCC--EEEEEcCCC-eEEEEEcCCCCcccccceeccccCC--CeEE-EEecCCCe
Q 021744          215 WNTQTNTDLSLSGP--VGQVYAMAVGND--LLFAGTQDG-AILAWKFNVTTNCFEPAASLKVHTD--SNRA-HFSRDVTS  286 (308)
Q Consensus       215 wd~~~~~~~~~~~~--~~~v~~~~~~~~--~l~~g~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~--~v~~-~~s~d~~~  286 (308)
                      ||........+..+  ...+..++++++  ++++...++ .|.+||...     +.+..+..+..  .+.. +++|+|++
T Consensus       190 ~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-----~~~~~~~~~~~~~~~~~i~~~~~g~l  264 (286)
T 1q7f_A          190 FNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-----QLISALESKVKHAQCFDVALMDDGSV  264 (286)
T ss_dssp             EETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-----CEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred             EcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-----CEEEEEcccCCCCcceeEEECCCCcE
Confidence            99865443344332  367899999998  666666665 999999643     44455544332  3556 99999987


Q ss_pred             EEEeeceEEEEee
Q 021744          287 LLGSVSFIMFIGQ  299 (308)
Q Consensus       287 l~~s~s~~i~~~~  299 (308)
                      ++++.+..|.++.
T Consensus       265 ~vs~~~~~v~v~~  277 (286)
T 1q7f_A          265 VLASKDYRLYIYR  277 (286)
T ss_dssp             EEEETTTEEEEEE
T ss_pred             EEECCCCeEEEEE
Confidence            7775555555544

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.63  E-value=2.3e-14  Score=122.81  Aligned_cols=223  Identities=9%  Similarity=0.059  Sum_probs=143.8

Q ss_pred             CCceEEecCCCeEEEeecC-CCCCCCCCcccccCCCCCCccccccceeEEecCCC--e-eecc-------------CCCc
Q 021744           26 GGLSTADTRQKVCNYWRAG-KCNRFPCPYLHRELPLPPAATANGAAAKRFANNTW--G-RNNN-------------FNNH   88 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~-~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~--~-~s~~-------------~d~~   88 (308)
                      +.++++++.+ .|++|+.. .+..   ..+.. .+    ..+. ...++|+|+|+  + +++.             .+++
T Consensus        51 g~~l~~~~~~-~v~~~~~~~~g~~---~~~~~-~~----~~g~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~  120 (365)
T 1jof_A           51 RKNIYGAAMK-KWSSFAVKSPTEI---VHEAS-HP----IGGH-PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGY  120 (365)
T ss_dssp             SSEEEEEEBT-EEEEEEEEETTEE---EEEEE-EE----CCSS-GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCE
T ss_pred             CCEEEEEccc-eEEEEEECCCCCE---EEeeE-ee----cCCC-CccEEECCCCCEEEEEEecCCcceeccceeecCCce
Confidence            5667777777 99999986 4410   00000 00    0111 11589999999  4 4553             6899


Q ss_pred             EEEEECCC-CCCcccccce----eeeeeeeeeeecCCce-EEee-CCCeEEEEEcC-CCc-eeeeEee--CcccceEEEE
Q 021744           89 SNNYRAGN-SKNSNINNRA----VIKTDILCRNWVQGNC-MYGE-KCKFLHSWTVG-DGF-KLLTQLE--GHQKVVSGIT  157 (308)
Q Consensus        89 i~vwd~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~g~-~d~~i~iwd~~-~~~-~~~~~~~--~h~~~v~~~~  157 (308)
                      +++|+++. ++... ....    +...+..+.|+|+|.. +++. .++.|++|++. +++ ..+..+.  .|...+..++
T Consensus       121 v~v~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~  199 (365)
T 1jof_A          121 GNVFSVSETGKLEK-NVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVA  199 (365)
T ss_dssp             EEEEEECTTCCEEE-EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEE
T ss_pred             EEEEccCCCCcCcc-eEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeE
Confidence            99999963 43221 1111    2234778899999976 3333 46899999998 662 1123343  2456789999


Q ss_pred             EeCCCCEEEEeeC-CCcEEEEeCC--CCeEE---EEEe-C--C----C-------eeE--E-EEcCCCEEEEEc--CC--
Q 021744          158 LPSGSDKLYSGSK-DETVRVWDCA--SGQCA---GVIN-L--G----G-------EVG--C-MISEGPWIFIGV--TN--  210 (308)
Q Consensus       158 ~~~~~~~l~s~s~-dg~v~~wd~~--~~~~~---~~~~-~--~----~-------~v~--~-~~~~~~~l~~~~--d~--  210 (308)
                      |+|+++++++++. ++.|.+|++.  +++..   ..+. .  .    .       .+.  + +++++++|+++.  ++  
T Consensus       200 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~  279 (365)
T 1jof_A          200 MHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFE  279 (365)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTT
T ss_pred             ECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCC
Confidence            9999999887765 7899999765  56543   2232 1  1    1       232  3 558999887654  33  


Q ss_pred             ---cEEEEEcC-CCceee----eeCCCCCEEEEEEeC---C--EEEEEcC-CCeEEEEEcCCC
Q 021744          211 ---FVKAWNTQ-TNTDLS----LSGPVGQVYAMAVGN---D--LLFAGTQ-DGAILAWKFNVT  259 (308)
Q Consensus       211 ---~i~~wd~~-~~~~~~----~~~~~~~v~~~~~~~---~--~l~~g~~-dg~i~iwd~~~~  259 (308)
                         .|.+|++. +++...    ...+...+..++|+|   +  +|++++. ++.|.+|++...
T Consensus       280 ~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          280 LQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence               89999996 565442    233445567889999   6  7777776 589999999864

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.62  E-value=2.7e-13  Score=125.17  Aligned_cols=264  Identities=8%  Similarity=-0.057  Sum_probs=157.6

Q ss_pred             CceEEe--cCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEe--cCCCe-eecc--CCCcEEEEECC--C-
Q 021744           27 GLSTAD--TRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFA--NNTWG-RNNN--FNNHSNNYRAG--N-   96 (308)
Q Consensus        27 ~~~~s~--s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s--~~g~~-~s~~--~d~~i~vwd~~--~-   96 (308)
                      -.+++.  +.++..++|....+.. ...+............++.+....++  |||+. +..+  .+..|.+|++.  . 
T Consensus        36 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~  114 (662)
T 3azo_A           36 VWWVAPRPAEAGRATLVRRRADGA-EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGG  114 (662)
T ss_dssp             EEEEEEETTTTTEEEEEEECTTSC-EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTC
T ss_pred             EEEEecCcccCCcEEEEEECCCCC-cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCC
Confidence            344555  5588999998533211 11111100010111112222234455  99886 4333  34556666665  2 


Q ss_pred             CCCcccccce-----eeeeeeeeeeecCCce-EEeeCC----------CeEEEEEcCC------CceeeeEee-Ccccce
Q 021744           97 SKNSNINNRA-----VIKTDILCRNWVQGNC-MYGEKC----------KFLHSWTVGD------GFKLLTQLE-GHQKVV  153 (308)
Q Consensus        97 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~g~~d----------~~i~iwd~~~------~~~~~~~~~-~h~~~v  153 (308)
                      ++..  .+..     +...+..+.|+|+|.. ++++.+          ..|++||+.+      + + ...+. .+...+
T Consensus       115 ~~~~--~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~-~~~l~~~~~~~~  190 (662)
T 3azo_A          115 AVPR--PLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS-A-VRELSDDAHRFV  190 (662)
T ss_dssp             CCCE--ECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG-G-SEESSCSCSSEE
T ss_pred             CCCE--eccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC-c-eeEEEecCCCcc
Confidence            3322  1222     3455778999999976 556655          5899999988      5 3 34455 566788


Q ss_pred             EEEEEeCCCCEEEEeeCCC--------cEEEEeCC-CC---eEEEEEe-CCCeeEEE--EcCCCEEEEEc-CC--cEEEE
Q 021744          154 SGITLPSGSDKLYSGSKDE--------TVRVWDCA-SG---QCAGVIN-LGGEVGCM--ISEGPWIFIGV-TN--FVKAW  215 (308)
Q Consensus       154 ~~~~~~~~~~~l~s~s~dg--------~v~~wd~~-~~---~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~--~i~~w  215 (308)
                      ..++|+|||++|+.++.++        .|++||+. ++   +...... +...+..+  ++++++++++. ++  .|.+|
T Consensus       191 ~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~  270 (662)
T 3azo_A          191 TGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRV  270 (662)
T ss_dssp             CCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEE
T ss_pred             cCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEE
Confidence            8999999999998887553        79999999 56   4443333 34444443  57899777666 66  67777


Q ss_pred             EcCCCceeeeeCCCCC---------EEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEEEEecCC
Q 021744          216 NTQTNTDLSLSGPVGQ---------VYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRAHFSRDV  284 (308)
Q Consensus       216 d~~~~~~~~~~~~~~~---------v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~s~d~  284 (308)
                      |+.+++...+..+...         +.+++|+|+  ++++++. +.++||.+....   ..+..+..+...+...+++++
T Consensus       271 ~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~---~~~~~l~~~~~~~~~~~s~~~  346 (662)
T 3azo_A          271 DPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES---GELVDAAGPWTEWAATLTVSG  346 (662)
T ss_dssp             CTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT---TEEEECCSSCCEEEEEEEEET
T ss_pred             ECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC---CcEEEecCCCCeEEEEEecCC
Confidence            8777776644333221         467889887  7888888 999999544321   225566666555554337777


Q ss_pred             CeEE-Eee----ceEEEEee
Q 021744          285 TSLL-GSV----SFIMFIGQ  299 (308)
Q Consensus       285 ~~l~-~s~----s~~i~~~~  299 (308)
                      ..++ ++.    ...||...
T Consensus       347 ~~~~~~~~~~~~~~~i~~~d  366 (662)
T 3azo_A          347 TRAVGVAASPRTAYEVVELD  366 (662)
T ss_dssp             TEEEEEEEETTEEEEEEEEE
T ss_pred             CEEEEEEcCCCCCCEEEEEE
Confidence            6554 332    34677765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.62  E-value=1.8e-13  Score=127.14  Aligned_cols=224  Identities=7%  Similarity=-0.060  Sum_probs=151.5

Q ss_pred             eeEEecCCCe-e-----eccCCCcEEEEECCCCCCc-ccccceeeeeeeeeeeecCCce-EEeeCCCe------------
Q 021744           71 AKRFANNTWG-R-----NNNFNNHSNNYRAGNSKNS-NINNRAVIKTDILCRNWVQGNC-MYGEKCKF------------  130 (308)
Q Consensus        71 ~i~~s~~g~~-~-----s~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~------------  130 (308)
                      .++|||||++ |     .|+.+.+|++||+++++.. ......  .....+.|+|+|.. ++++.|..            
T Consensus       125 ~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~  202 (695)
T 2bkl_A          125 TWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYT  202 (695)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGC
T ss_pred             EEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCccccCCCCC
Confidence            7899999998 6     5666789999999988754 211111  11257889999975 66666655            


Q ss_pred             -EEEEEcCCCc---eeeeEeeCcccceEEEEEeCCCCEEEEeeCCC----cEEEEeCCCCeEEEEEeCCC-eeEEEEcCC
Q 021744          131 -LHSWTVGDGF---KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE----TVRVWDCASGQCAGVINLGG-EVGCMISEG  201 (308)
Q Consensus       131 -i~iwd~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg----~v~~wd~~~~~~~~~~~~~~-~v~~~~~~~  201 (308)
                       |++|++.++.   ..+.....|...+..+.|+||+++|+..+.++    .|.+|+..+++......... ....+++++
T Consensus       203 ~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~g  282 (695)
T 2bkl_A          203 TIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHAWKD  282 (695)
T ss_dssp             EEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEEETT
T ss_pred             EEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEecCC
Confidence             9999998873   13334444667889999999999988877666    67778776665444444333 333445777


Q ss_pred             CEEEEEc----CCcEEEEEcCCCce---eeeeCC--CCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccc
Q 021744          202 PWIFIGV----TNFVKAWNTQTNTD---LSLSGP--VGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKV  271 (308)
Q Consensus       202 ~~l~~~~----d~~i~~wd~~~~~~---~~~~~~--~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  271 (308)
                      ++++.+.    ++.|.+||+.+++.   ..+..+  ...+..++++.+ ++++...|+..++|.+....   +....+..
T Consensus       283 ~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g---~~~~~l~~  359 (695)
T 2bkl_A          283 RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKG---KPVRTVQL  359 (695)
T ss_dssp             EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTC---CEEEECCC
T ss_pred             cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCC---CeeEEecC
Confidence            7444443    46899999988753   444333  446888999866 88888999998888765321   33444554


Q ss_pred             c-CCCeEE-EEecCCCeEEEee-----ceEEEEee
Q 021744          272 H-TDSNRA-HFSRDVTSLLGSV-----SFIMFIGQ  299 (308)
Q Consensus       272 ~-~~~v~~-~~s~d~~~l~~s~-----s~~i~~~~  299 (308)
                      + ...+.. +++|+++.++.+.     ...+|.+.
T Consensus       360 ~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d  394 (695)
T 2bkl_A          360 PGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTS  394 (695)
T ss_dssp             SSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEE
T ss_pred             CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence            4 455666 8899987776333     35676665

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.61  E-value=1.1e-13  Score=119.28  Aligned_cols=222  Identities=9%  Similarity=0.000  Sum_probs=139.6

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCccccc--ce-eee-e-eee-------------eeeecCCce-EEe-----
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN--RA-VIK-T-DIL-------------CRNWVQGNC-MYG-----  125 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~--~~-~~~-~-~~~-------------~~~~~~~~~-~~g-----  125 (308)
                      .+.|+|+|+. +..+.++.|.+||+.+++......  .. ... . +..             +.++|++.. +..     
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~  164 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT  164 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence            3789999999 888888899999998765321111  00 000 0 000             345666654 222     


Q ss_pred             eCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeC-CCCEEEEeeCC------CcEEEEeCCCCeEEEEEeCC-C-eeE-
Q 021744          126 EKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKD------ETVRVWDCASGQCAGVINLG-G-EVG-  195 (308)
Q Consensus       126 ~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d------g~v~~wd~~~~~~~~~~~~~-~-~v~-  195 (308)
                      ..+..|++||+.++ +... +..+...+..+.|+| ++..|+..+.+      ..|.+||+..++........ . .+. 
T Consensus       165 ~~~~~l~~~d~~~g-~~~~-~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~  242 (396)
T 3c5m_A          165 NPTCRLIKVDIETG-ELEV-IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTH  242 (396)
T ss_dssp             CCCEEEEEEETTTC-CEEE-EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEE
T ss_pred             CCcceEEEEECCCC-cEEe-eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccc
Confidence            46678999999887 4433 335677889999999 78777666543      36888998766533322221 1 233 


Q ss_pred             -EEEcCCCEEEEE-cC-----CcEEEEEcCCCceeeeeCCCCCEEEEEEeC-C--EEEEEc----------------CCC
Q 021744          196 -CMISEGPWIFIG-VT-----NFVKAWNTQTNTDLSLSGPVGQVYAMAVGN-D--LLFAGT----------------QDG  249 (308)
Q Consensus       196 -~~~~~~~~l~~~-~d-----~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~-~--~l~~g~----------------~dg  249 (308)
                       .++++++.|+.. .+     +.|++||+.+++...+..... .. +.|+| +  ++++++                .+.
T Consensus       243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~  320 (396)
T 3c5m_A          243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDP  320 (396)
T ss_dssp             EEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCC
T ss_pred             eEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCC
Confidence             345788876643 32     349999999887664432222 33 88999 7  565543                347


Q ss_pred             eEEEEEcCCCCcccccceeccccCC-----------CeEE-EEecCCCeEEEee----ceEEEEeecC
Q 021744          250 AILAWKFNVTTNCFEPAASLKVHTD-----------SNRA-HFSRDVTSLLGSV----SFIMFIGQNN  301 (308)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~~~~-----------~v~~-~~s~d~~~l~~s~----s~~i~~~~~~  301 (308)
                      .|++||+.++.     ...+..+..           .+.. +|+|||+.|+...    ...||....+
T Consensus       321 ~i~~~d~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~  383 (396)
T 3c5m_A          321 FLYVLNTKAKS-----AQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVP  383 (396)
T ss_dssp             EEEEEETTTTB-----CCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred             cEEEEecccCc-----eEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEc
Confidence            89999998752     233444433           2455 8999999887443    4567776533

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.61  E-value=1.5e-13  Score=118.32  Aligned_cols=225  Identities=9%  Similarity=-0.077  Sum_probs=146.1

Q ss_pred             eEEecCCCe-eeccC-CCc--EEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEe
Q 021744           72 KRFANNTWG-RNNNF-NNH--SNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQL  146 (308)
Q Consensus        72 i~~s~~g~~-~s~~~-d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~  146 (308)
                      .+|+|||+. +.++. ++.  |.+||+++++... ....+...+....|+|++.. +++..++.|++||+.++ +....+
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g-~~~~~~  118 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-LTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL-EENVVY  118 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-CCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTC-CEEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-eeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCC-cceeee
Confidence            689999998 66665 664  7888887775432 11222223445689999976 77788899999999988 555555


Q ss_pred             eCcccceEEEE--EeCCCCEEEEe----------------------eCCCcEEEEeCCCCeEEEEEeCCCeeEE--EEc-
Q 021744          147 EGHQKVVSGIT--LPSGSDKLYSG----------------------SKDETVRVWDCASGQCAGVINLGGEVGC--MIS-  199 (308)
Q Consensus       147 ~~h~~~v~~~~--~~~~~~~l~s~----------------------s~dg~v~~wd~~~~~~~~~~~~~~~v~~--~~~-  199 (308)
                      ..+...+....  ++|++++++..                      ..+..|.+||+.+++..........+..  ++| 
T Consensus       119 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~  198 (388)
T 3pe7_A          119 QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPY  198 (388)
T ss_dssp             ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETT
T ss_pred             echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCC
Confidence            55555554443  48899888742                      3457899999999887666555554443  468 


Q ss_pred             CCCEEEEEc-C------CcEEEEEcCCCceeeeeCCC--CCEEEEEEeCC--EEEE-EcCCC----eEEEEEcCCCCccc
Q 021744          200 EGPWIFIGV-T------NFVKAWNTQTNTDLSLSGPV--GQVYAMAVGND--LLFA-GTQDG----AILAWKFNVTTNCF  263 (308)
Q Consensus       200 ~~~~l~~~~-d------~~i~~wd~~~~~~~~~~~~~--~~v~~~~~~~~--~l~~-g~~dg----~i~iwd~~~~~~~~  263 (308)
                      +++.|+... +      ..|.++|+.+++...+..+.  ..+..+.|+||  .|+. +..++    .|++||+.+++.  
T Consensus       199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--  276 (388)
T 3pe7_A          199 DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN--  276 (388)
T ss_dssp             EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE--
T ss_pred             CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce--
Confidence            888887543 2      27888898877766555544  35788999999  4443 33222    399999998742  


Q ss_pred             ccceeccccCCC---eEE-EEecCCCeEEEe----------eceEEEEeec
Q 021744          264 EPAASLKVHTDS---NRA-HFSRDVTSLLGS----------VSFIMFIGQN  300 (308)
Q Consensus       264 ~~~~~~~~~~~~---v~~-~~s~d~~~l~~s----------~s~~i~~~~~  300 (308)
                      +.+..+..+...   ... .|+|||+.|+.+          ....||++..
T Consensus       277 ~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~  327 (388)
T 3pe7_A          277 RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM  327 (388)
T ss_dssp             EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEET
T ss_pred             EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEec
Confidence            334343331111   122 699999988743          2446766653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.60  E-value=1.2e-13  Score=113.68  Aligned_cols=207  Identities=11%  Similarity=0.007  Sum_probs=141.5

Q ss_pred             CCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCc
Q 021744           23 GGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        23 ~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~  100 (308)
                      +.++.+|++++.|+.|.+||..+++     .+.. .+...    .... .++++|+|++ +  +.++.|..||. +++.+
T Consensus         2 ~~~~~~lv~~~~~~~v~~~d~~tG~-----~~w~-~~~~~----~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~   68 (276)
T 3no2_A            2 SSPQHLLVGGSGWNKIAIINKDTKE-----IVWE-YPLEK----GWECNSVAATKAGEILF--SYSKGAKMITR-DGREL   68 (276)
T ss_dssp             -CCCEEEEECTTCSEEEEEETTTTE-----EEEE-EECCT----TCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEE
T ss_pred             CCCCcEEEeeCCCCEEEEEECCCCe-----EEEE-eCCCc----cCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEE
Confidence            5667899999999999999987772     1111 11110    0112 6899999999 6  45788999998 66644


Q ss_pred             ccccceeeeeeeeeeeecCCce-EEeeC-CCeEEEEEcCCCceeeeEee------CcccceEEEEEeCCCCEEEEeeCCC
Q 021744          101 NINNRAVIKTDILCRNWVQGNC-MYGEK-CKFLHSWTVGDGFKLLTQLE------GHQKVVSGITLPSGSDKLYSGSKDE  172 (308)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~-d~~i~iwd~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~s~s~dg  172 (308)
                      ..........+..+.+.++|.. ++.+. ++.|..+|. ++ +.+.++.      ++......+++.++++++++...++
T Consensus        69 W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~G-k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~  146 (276)
T 3no2_A           69 WNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KG-EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS  146 (276)
T ss_dssp             EEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TS-CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred             EEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CC-CEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC
Confidence            3222211234667788899977 44444 677877776 45 4555543      2223456678899999999999999


Q ss_pred             cEEEEeCCCCeEEEEEeCCCeeE--EEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCC------CCEEEEEEeCC--
Q 021744          173 TVRVWDCASGQCAGVINLGGEVG--CMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPV------GQVYAMAVGND--  240 (308)
Q Consensus       173 ~v~~wd~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~------~~v~~~~~~~~--  240 (308)
                      .|..||.+ ++.+.++.......  ...+++++++++. ++.|..+|..+++.+ ++....      ..+..+...++  
T Consensus       147 ~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~  225 (276)
T 3no2_A          147 EVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGG  225 (276)
T ss_dssp             EEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSC
T ss_pred             EEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCC
Confidence            99999998 99999998543332  2357788888776 568999999999887 443221      23778888887  


Q ss_pred             EEEEE
Q 021744          241 LLFAG  245 (308)
Q Consensus       241 ~l~~g  245 (308)
                      ++++.
T Consensus       226 i~v~~  230 (276)
T 3no2_A          226 LYICN  230 (276)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            44444

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.60  E-value=6.5e-13  Score=123.68  Aligned_cols=223  Identities=10%  Similarity=-0.031  Sum_probs=148.5

Q ss_pred             eeEEecCCCe-eeccCC-C----cEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCe-------------
Q 021744           71 AKRFANNTWG-RNNNFN-N----HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKF-------------  130 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d-~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~-------------  130 (308)
                      .++|||||++ |.++.+ |    +|++||+++++....  ......+..+.|+|+|.. +++..++.             
T Consensus       129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~  206 (710)
T 2xdw_A          129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (710)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             EEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cccCcccceEEEEeCCCEEEEEEECCccccccccccccCC
Confidence            7899999998 544332 2    899999988865422  111222567889999965 66665554             


Q ss_pred             ---EEEEEcCCCce---eeeEeeCcccceEEEEEeCCCCEEEEeeC-----CCcEEEEeCCC------Ce-EEEEEe-CC
Q 021744          131 ---LHSWTVGDGFK---LLTQLEGHQKVVSGITLPSGSDKLYSGSK-----DETVRVWDCAS------GQ-CAGVIN-LG  191 (308)
Q Consensus       131 ---i~iwd~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-----dg~v~~wd~~~------~~-~~~~~~-~~  191 (308)
                         |++|++.++..   .+.....|...+..+.|+||+++|+..+.     +..|.+||+.+      ++ ....+. +.
T Consensus       207 ~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~  286 (710)
T 2xdw_A          207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF  286 (710)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS
T ss_pred             CCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCC
Confidence               99999988731   22222335566889999999999887764     56899999986      42 234444 33


Q ss_pred             C-eeEEEEcCCCEEEE-Ec----CCcEEEEEcCCCce---eeeeCCCC--CEEEEEEeCC--EEEEEcCCCe--EEEEEc
Q 021744          192 G-EVGCMISEGPWIFI-GV----TNFVKAWNTQTNTD---LSLSGPVG--QVYAMAVGND--LLFAGTQDGA--ILAWKF  256 (308)
Q Consensus       192 ~-~v~~~~~~~~~l~~-~~----d~~i~~wd~~~~~~---~~~~~~~~--~v~~~~~~~~--~l~~g~~dg~--i~iwd~  256 (308)
                      . ....+.++++.|+. +.    ...|.+||+.+++.   ..+..+..  .+..++++++  ++++...|+.  |.+|++
T Consensus       287 ~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~  366 (710)
T 2xdw_A          287 EGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL  366 (710)
T ss_dssp             SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred             CcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence            2 23345678887664 33    23699999988742   44555544  6888999955  7778888885  555666


Q ss_pred             CCCCcccccceeccccCCCeEE-EEecCCCeEEEee-----ceEEEEee
Q 021744          257 NVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-----SFIMFIGQ  299 (308)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-----s~~i~~~~  299 (308)
                      .++    +.+..+..+...+.. .++|++..++.+.     ...+|.+.
T Consensus       367 ~~g----~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d  411 (710)
T 2xdw_A          367 ATG----ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD  411 (710)
T ss_dssp             TTC----CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred             CCC----CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence            555    445666666667777 8999987666332     34666655

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.59  E-value=3.1e-13  Score=124.71  Aligned_cols=187  Identities=11%  Similarity=0.009  Sum_probs=127.1

Q ss_pred             eeEEecCCCe-eeccCC----------CcEEEEECCC------CCCcccccc-eeeeeeeeeeeecCCce-EEeeCC---
Q 021744           71 AKRFANNTWG-RNNNFN----------NHSNNYRAGN------SKNSNINNR-AVIKTDILCRNWVQGNC-MYGEKC---  128 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d----------~~i~vwd~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~g~~d---  128 (308)
                      .++|+|||+. +.++.|          .+|.+||+++      ++..  ... .+...+....|+|+|.. ++.+.+   
T Consensus       134 ~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~  211 (662)
T 3azo_A          134 DPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR--ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPR  211 (662)
T ss_dssp             EEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE--ESSCSCSSEECCCEECTTSSEEEEEEECTTC
T ss_pred             CcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee--EEEecCCCcccCceECCCCCEEEEEECCCCC
Confidence            7899999998 777766          5899999977      4332  222 23345677889999976 445533   


Q ss_pred             -----CeEEEEEcC-CCc--eeeeEeeCcccceEEEEEeCCCCEEEEeeCCC--cEEEEeCCCCeEEEEEeCCCee----
Q 021744          129 -----KFLHSWTVG-DGF--KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE--TVRVWDCASGQCAGVINLGGEV----  194 (308)
Q Consensus       129 -----~~i~iwd~~-~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg--~v~~wd~~~~~~~~~~~~~~~v----  194 (308)
                           ..|++||+. ++.  +......+|...+..++|+||+++++++..++  .|.+||+.+++..........+    
T Consensus       212 ~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~  291 (662)
T 3azo_A          212 MPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPL  291 (662)
T ss_dssp             CTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCC
T ss_pred             CCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCcc
Confidence                 479999998 451  23333344578899999999999888888888  6777777677654433322211    


Q ss_pred             -------EEEEcCCCEEEEEcCCcEEEE--EcCCCceeeeeCCCCCEEEE-EEeCC--EEEEEcCCCe--EEEEEcCCC
Q 021744          195 -------GCMISEGPWIFIGVTNFVKAW--NTQTNTDLSLSGPVGQVYAM-AVGND--LLFAGTQDGA--ILAWKFNVT  259 (308)
Q Consensus       195 -------~~~~~~~~~l~~~~d~~i~~w--d~~~~~~~~~~~~~~~v~~~-~~~~~--~l~~g~~dg~--i~iwd~~~~  259 (308)
                             ..+.+++++++++..+.+++|  |+.+++...+..+...+..+ +++++  ++++++.+..  |.++|+.++
T Consensus       292 w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g  370 (662)
T 3azo_A          292 WTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG  370 (662)
T ss_dssp             CSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred             ccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence                   223467888876654777777  77777766777787788888 77777  4455555554  455565554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.59  E-value=6e-13  Score=112.83  Aligned_cols=231  Identities=7%  Similarity=-0.071  Sum_probs=148.2

Q ss_pred             CCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCC---C--cEEEEECCCCCCcccccceee
Q 021744           35 QKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFN---N--HSNNYRAGNSKNSNINNRAVI  108 (308)
Q Consensus        35 d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d---~--~i~vwd~~~~~~~~~~~~~~~  108 (308)
                      +..|++|+...++           +  ..+  .....++|+|||+. +..+.+   +  .|.+||+++++..  ......
T Consensus        42 ~~~l~~~d~~~~~-----------~--~~l--~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~--~l~~~~  104 (347)
T 2gop_A           42 ENTIVIENLKNNA-----------R--RFI--ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK--KILEAK  104 (347)
T ss_dssp             EEEEEEEETTTCC-----------E--EEE--ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE--EEEEES
T ss_pred             cceEEEEeCCCCc-----------e--EEc--ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE--EEEcCC
Confidence            6789999988761           1  011  11116899999998 655543   3  3777788766433  222222


Q ss_pred             eeeeeeeeecCCce-EEeeC---------------------------CCeEEEEEcCCCceeeeEeeCcccceEEEEEeC
Q 021744          109 KTDILCRNWVQGNC-MYGEK---------------------------CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS  160 (308)
Q Consensus       109 ~~~~~~~~~~~~~~-~~g~~---------------------------d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~  160 (308)
                      . +..+.|+|++.. ++.+.                           ...|++||+.++ +.+..+.. . .+..++|+|
T Consensus       105 ~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~-~~~~~l~~-~-~~~~~~~sp  180 (347)
T 2gop_A          105 N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE-EVIEEFEK-P-RFSSGIWHR  180 (347)
T ss_dssp             E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT-EEEEEEEE-E-TTCEEEEET
T ss_pred             C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC-eEEeeecC-C-CcccccCCC
Confidence            3 778899999965 44442                           367999999888 55345554 4 888999999


Q ss_pred             CCCEEEEeeCCC-------cEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEc-C--------CcEEEEEcCCCceee
Q 021744          161 GSDKLYSGSKDE-------TVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGV-T--------NFVKAWNTQTNTDLS  224 (308)
Q Consensus       161 ~~~~l~s~s~dg-------~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d--------~~i~~wd~~~~~~~~  224 (308)
                      ++ .++++..+.       ...+|.+.+++....... ..+..++++++.|+... +        ..|.+||  +++...
T Consensus       181 dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~  256 (347)
T 2gop_A          181 DK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG  256 (347)
T ss_dssp             TE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE
T ss_pred             Ce-EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEe
Confidence            99 777776542       334444435554433334 44445578998777543 2        3688888  555554


Q ss_pred             e-eCCCCCEEE-EEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee----ceEEE
Q 021744          225 L-SGPVGQVYA-MAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV----SFIMF  296 (308)
Q Consensus       225 ~-~~~~~~v~~-~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~----s~~i~  296 (308)
                      + ..+...+.. +.|+ + ++++++.++.++|| +.++    +. ..+..+...+.. +|+|  .++++..    ...||
T Consensus       257 l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g----~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~  327 (347)
T 2gop_A          257 ILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDG----EI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELF  327 (347)
T ss_dssp             SSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESS----SE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEE
T ss_pred             ccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCC----ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHhe
Confidence            3 445667876 8999 8 88899999999999 8743    33 333345667777 9998  4554433    23677


Q ss_pred             Eee
Q 021744          297 IGQ  299 (308)
Q Consensus       297 ~~~  299 (308)
                      ...
T Consensus       328 ~~~  330 (347)
T 2gop_A          328 TWD  330 (347)
T ss_dssp             EES
T ss_pred             EeC
Confidence            764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.58  E-value=1.2e-12  Score=107.76  Aligned_cols=203  Identities=9%  Similarity=-0.045  Sum_probs=148.6

Q ss_pred             Ce-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcc-cceEEE
Q 021744           79 WG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-KVVSGI  156 (308)
Q Consensus        79 ~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~-~~v~~~  156 (308)
                      +. ++++.|+.|.+||.++++.+..........+..+.+.|+|..+. +.++.|+.||. ++ +.+..+..+. ..+.++
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G-~~~W~~~~~~~~~~~~~   82 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DG-RELWNIAAPAGCEMQTA   82 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TS-CEEEEEECCTTCEEEEE
T ss_pred             cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CC-CEEEEEcCCCCcccccc
Confidence            45 89999999999999888765322221112467778899998855 56788999999 77 6788887653 578889


Q ss_pred             EEeCCCCEEEEeeC-CCcEEEEeCCCCeEEEEEeCCCe---------eEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-e
Q 021744          157 TLPSGSDKLYSGSK-DETVRVWDCASGQCAGVINLGGE---------VGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-S  224 (308)
Q Consensus       157 ~~~~~~~~l~s~s~-dg~v~~wd~~~~~~~~~~~~~~~---------v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~  224 (308)
                      .+.++++.+++.+. ++.|..+|. +++.+..+.....         .....++++++++.. ++.|..||.. ++.+ +
T Consensus        83 ~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~  160 (276)
T 3no2_A           83 RILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNS  160 (276)
T ss_dssp             EECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred             EECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEE
Confidence            99999999999887 788888885 6888877762211         123457899998876 8899999998 7777 5


Q ss_pred             eeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccC------CCeEE-EEecCCCeEEEee
Q 021744          225 LSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT------DSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       225 ~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~------~~v~~-~~s~d~~~l~~s~  291 (308)
                      +... ..+.++...++  ++++++.+++|..+|..++    +.+.++..+.      ..+.. ...++|..++++.
T Consensus       161 ~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG----~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          161 VKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN----RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC----CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC----cEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            5443 45566777777  7788888889999999987    5555554221      22555 7788998888763

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.57  E-value=1e-12  Score=110.83  Aligned_cols=213  Identities=9%  Similarity=0.041  Sum_probs=139.0

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEe-eCC----CeEEEEEcCCCceeee
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYG-EKC----KFLHSWTVGDGFKLLT  144 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~d----~~i~iwd~~~~~~~~~  144 (308)
                      .++|+|+|.+ +++..++.|.+||.++++..... ..+...+..+.+.+++..+.+ ..+    +.|.+||..++ +...
T Consensus        49 ~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~-~~~~  126 (333)
T 2dg1_A           49 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD-NLQD  126 (333)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC-SCEE
T ss_pred             CcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC-EEEE
Confidence            6899999999 88889999999999776533111 122344778889999977444 444    58999999877 3332


Q ss_pred             Eee--CcccceEEEEEeCCCCEEEEeeC------CCcEEEEeCCCCeEEEEEeCCCeeEE--EEcCCCEEEE-Ec-CCcE
Q 021744          145 QLE--GHQKVVSGITLPSGSDKLYSGSK------DETVRVWDCASGQCAGVINLGGEVGC--MISEGPWIFI-GV-TNFV  212 (308)
Q Consensus       145 ~~~--~h~~~v~~~~~~~~~~~l~s~s~------dg~v~~wd~~~~~~~~~~~~~~~v~~--~~~~~~~l~~-~~-d~~i  212 (308)
                      .+.  .+...+..++++|+++++++...      .+.|..+|..+++.............  +.++++.+++ .. ++.|
T Consensus       127 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i  206 (333)
T 2dg1_A          127 IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRL  206 (333)
T ss_dssp             EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred             EEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeE
Confidence            222  24457899999999988777654      35677777665554433332222333  3578886654 44 7899


Q ss_pred             EEEEcCC-Ccee-e--------eeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCC------
Q 021744          213 KAWNTQT-NTDL-S--------LSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTD------  274 (308)
Q Consensus       213 ~~wd~~~-~~~~-~--------~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------  274 (308)
                      .+||+.+ +... .        +.++ ..+..++++++  ++++...++.|.+||...     +.+..+..+..      
T Consensus       207 ~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g-----~~~~~~~~~~~~~g~~~  280 (333)
T 2dg1_A          207 HRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG-----YPIGQILIPGRDEGHML  280 (333)
T ss_dssp             EEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTS-----CEEEEEECTTGGGTCSC
T ss_pred             EEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCC-----CEEEEEEcCCCcccccc
Confidence            9999964 3221 1        1122 46788999998  556666678999999843     33444443322      


Q ss_pred             CeEE-EEecCCCeEEEee
Q 021744          275 SNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       275 ~v~~-~~s~d~~~l~~s~  291 (308)
                      .+.. +|+||++.|+.+.
T Consensus       281 ~~~~~~~~~dg~~L~v~~  298 (333)
T 2dg1_A          281 RSTHPQFIPGTNQLIICS  298 (333)
T ss_dssp             BCCEEEECTTSCEEEEEE
T ss_pred             CcceEEECCCCCEEEEEe
Confidence            4666 9999987665433

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.57  E-value=1.4e-11  Score=103.84  Aligned_cols=255  Identities=7%  Similarity=-0.054  Sum_probs=158.5

Q ss_pred             CCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeee
Q 021744           34 RQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDI  112 (308)
Q Consensus        34 ~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  112 (308)
                      .+++|.++|..++......+....   .. ..|.....+.+. ++.. ++...+++|.+||..+++.+...  .......
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n---~~-~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i--~~~~~p~   87 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRAN---GF-KLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI--TGFTSPR   87 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHH---SS-CCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE--ECCSSEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhc---Cc-ccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc--CCCCCCc
Confidence            488999999887621110000000   00 111111246663 3334 77777899999999888765332  2223466


Q ss_pred             eeeeecCCceEEee-CCCeEEEEEcCCCceeeeEeeCcc-----cceEEEEEeCCCCEEEEee-CCCcEEEEeCCCCeEE
Q 021744          113 LCRNWVQGNCMYGE-KCKFLHSWTVGDGFKLLTQLEGHQ-----KVVSGITLPSGSDKLYSGS-KDETVRVWDCASGQCA  185 (308)
Q Consensus       113 ~~~~~~~~~~~~g~-~d~~i~iwd~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~l~s~s-~dg~v~~wd~~~~~~~  185 (308)
                      .+.+++++....+. .++.|.+||+.++ +....+....     .....+++ .++..+++.. .++.|.++|+++++.+
T Consensus        88 ~i~~~~~g~lyv~~~~~~~v~~iD~~t~-~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~  165 (328)
T 3dsm_A           88 YIHFLSDEKAYVTQIWDYRIFIINPKTY-EITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVV  165 (328)
T ss_dssp             EEEEEETTEEEEEEBSCSEEEEEETTTT-EEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred             EEEEeCCCeEEEEECCCCeEEEEECCCC-eEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEE
Confidence            77887888664444 7899999999998 6666665332     14567777 3344444443 4899999999999998


Q ss_pred             EEEeCCCeeE--EEEcCCCEEEEEc-C----------CcEEEEEcCCCcee-eeeCC-CCCEEEEEEeCC--EEEEEcCC
Q 021744          186 GVINLGGEVG--CMISEGPWIFIGV-T----------NFVKAWNTQTNTDL-SLSGP-VGQVYAMAVGND--LLFAGTQD  248 (308)
Q Consensus       186 ~~~~~~~~v~--~~~~~~~~l~~~~-d----------~~i~~wd~~~~~~~-~~~~~-~~~v~~~~~~~~--~l~~g~~d  248 (308)
                      ..+.......  .+.+++++++++. +          +.|.++|..+++.. .+... ......++++|+  .|.++.. 
T Consensus       166 ~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-  244 (328)
T 3dsm_A          166 DELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-  244 (328)
T ss_dssp             EEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-
T ss_pred             EEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-
Confidence            8887433333  3356788766654 3          68999999998876 44322 236899999997  6655544 


Q ss_pred             CeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeE-EEe-----eceEEEEeecC
Q 021744          249 GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSL-LGS-----VSFIMFIGQNN  301 (308)
Q Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l-~~s-----~s~~i~~~~~~  301 (308)
                       .|.+||..+++.  .....+......... +++|++..| ++.     .+..|+++..+
T Consensus       245 -~v~~~d~~t~~~--~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          245 -DIWRMPVEADRV--PVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             -SEEEEETTCSSC--CSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             -EEEEEECCCCce--eeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence             899999987632  111112222345666 999954444 443     25666666544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.56  E-value=1.2e-12  Score=110.60  Aligned_cols=225  Identities=7%  Similarity=-0.051  Sum_probs=153.2

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      ++.++++...++.|.+||..++..     +.. .      .....+ .+++++++.. ++...++.|.+||..+++....
T Consensus        53 ~~~lyv~~~~~~~v~viD~~t~~~-----~~~-i------~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~  120 (328)
T 3dsm_A           53 DGIGWIVVNNSHVIFAIDINTFKE-----VGR-I------TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGY  120 (328)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTCCE-----EEE-E------ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred             CCEEEEEEcCCCEEEEEECcccEE-----EEE-c------CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence            355777777889999999987711     100 1      111222 7899999966 6666899999999987764422


Q ss_pred             cccee----eeeeeeeeeecCCce-EEee-CCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCC-----
Q 021744          103 NNRAV----IKTDILCRNWVQGNC-MYGE-KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD-----  171 (308)
Q Consensus       103 ~~~~~----~~~~~~~~~~~~~~~-~~g~-~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-----  171 (308)
                      ...+.    ......+.+ ..+.. ++.. .++.|.++|+.++ +.+..+... .....++++|++++++++..+     
T Consensus       121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~-~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~  197 (328)
T 3dsm_A          121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETD-KVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSP  197 (328)
T ss_dssp             EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTT-EEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCS
T ss_pred             EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCC-eEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCc
Confidence            11111    002333444 44555 4433 4889999999998 677666643 345788999999877777655     


Q ss_pred             -----CcEEEEeCCCCeEEEEEeC--CCeeEE--EEcCCCEEEEEcCCcEEEEEcCCCcee--e-eeCCCCCEEEEEEeC
Q 021744          172 -----ETVRVWDCASGQCAGVINL--GGEVGC--MISEGPWIFIGVTNFVKAWNTQTNTDL--S-LSGPVGQVYAMAVGN  239 (308)
Q Consensus       172 -----g~v~~wd~~~~~~~~~~~~--~~~v~~--~~~~~~~l~~~~d~~i~~wd~~~~~~~--~-~~~~~~~v~~~~~~~  239 (308)
                           +.|.++|..+++....+..  ......  +.+++++|+++.. .|.+||..+++..  . +.........++++|
T Consensus       198 ~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp  276 (328)
T 3dsm_A          198 YGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNP  276 (328)
T ss_dssp             SCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECT
T ss_pred             cccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcC
Confidence                 7899999999998877764  223333  3567888887655 9999999988764  1 222245789999998


Q ss_pred             C---EEEEE----cCCCeEEEEEcCCCCcccccceecc
Q 021744          240 D---LLFAG----TQDGAILAWKFNVTTNCFEPAASLK  270 (308)
Q Consensus       240 ~---~l~~g----~~dg~i~iwd~~~~~~~~~~~~~~~  270 (308)
                      +   ++++.    ..++.|.+||.. +    +.+.++.
T Consensus       277 ~~g~lyva~~~~y~~~~~V~v~d~~-g----~~~~~i~  309 (328)
T 3dsm_A          277 NNGEVYVADAIDYQQQGIVYRYSPQ-G----KLIDEFY  309 (328)
T ss_dssp             TTCCEEEEECTTSSSEEEEEEECTT-C----CEEEEEE
T ss_pred             CCCeEEEEcccccccCCEEEEECCC-C----CEEEEEE
Confidence            4   55665    678999999988 5    5556554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.55  E-value=2e-12  Score=107.30  Aligned_cols=217  Identities=10%  Similarity=0.035  Sum_probs=144.7

Q ss_pred             eeEEecCCC-e-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEe-eCCCeEEEEEcCCCceeeeEee
Q 021744           71 AKRFANNTW-G-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYG-EKCKFLHSWTVGDGFKLLTQLE  147 (308)
Q Consensus        71 ~i~~s~~g~-~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~d~~i~iwd~~~~~~~~~~~~  147 (308)
                      .++|+|+|+ . +++..++.|..||.+++ .  .....+...+..+.+.+++.++.+ ..++.|.+||..++ +......
T Consensus        32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~--~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g-~~~~~~~  107 (296)
T 3e5z_A           32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L--SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG-EWESIAD  107 (296)
T ss_dssp             EEEEEGGGTEEEEEEGGGTEEEEEETTSC-E--EEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC-CEEEEEC
T ss_pred             CCeEeCCCCEEEEEeCCCCEEEEEECCCC-e--EEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC-cEEEEee
Confidence            789999999 5 88888999999999765 2  122223344778889999987444 45689999999777 3332221


Q ss_pred             Cc----ccceEEEEEeCCCCEEEE----ee-------------CCCcEEEEeCCCCeEEEEEeCCCeeE--EEEcCCCEE
Q 021744          148 GH----QKVVSGITLPSGSDKLYS----GS-------------KDETVRVWDCASGQCAGVINLGGEVG--CMISEGPWI  204 (308)
Q Consensus       148 ~h----~~~v~~~~~~~~~~~l~s----~s-------------~dg~v~~wd~~~~~~~~~~~~~~~v~--~~~~~~~~l  204 (308)
                      ..    ...+..++++|+++++++    ++             ..+.|..++.. ++............  ++.++++.+
T Consensus       108 ~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~l  186 (296)
T 3e5z_A          108 SFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLL  186 (296)
T ss_dssp             EETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEE
T ss_pred             ccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEE
Confidence            11    134678999999998887    33             13456666655 54433333333333  335789888


Q ss_pred             EEEc-CCcEEEEEcC-CCce---e-eeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeE
Q 021744          205 FIGV-TNFVKAWNTQ-TNTD---L-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNR  277 (308)
Q Consensus       205 ~~~~-d~~i~~wd~~-~~~~---~-~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~  277 (308)
                      ++.. ++.|.+||+. +++.   . .+..+...+..++++++ .+..+. ++.|.+||...     +.+..+..+.. +.
T Consensus       187 v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~g-----~~~~~~~~~~~-~~  259 (296)
T 3e5z_A          187 VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPDG-----DELGRVLTPQT-TS  259 (296)
T ss_dssp             EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTTS-----CEEEEEECSSC-CC
T ss_pred             EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCCC-----CEEEEEECCCC-ce
Confidence            6555 7899999997 5554   2 23334456678999998 444444 78999999863     55666666666 66


Q ss_pred             E-EE-ecCCCeEEEeeceEEEEee
Q 021744          278 A-HF-SRDVTSLLGSVSFIMFIGQ  299 (308)
Q Consensus       278 ~-~~-s~d~~~l~~s~s~~i~~~~  299 (308)
                      . +| +|+++.|.++....+|...
T Consensus       260 ~~~f~~~d~~~L~v~t~~~l~~~~  283 (296)
T 3e5z_A          260 NLCFGGPEGRTLYMTVSTEFWSIE  283 (296)
T ss_dssp             EEEEESTTSCEEEEEETTEEEEEE
T ss_pred             eEEEECCCCCEEEEEcCCeEEEEE
Confidence            6 89 5888888766655565544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.54  E-value=4.5e-13  Score=115.48  Aligned_cols=225  Identities=6%  Similarity=-0.129  Sum_probs=138.8

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-------------eeEEecCCCe-eec-----cC
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-------------AKRFANNTWG-RNN-----NF   85 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-------------~i~~s~~g~~-~s~-----~~   85 (308)
                      .+..|+..+.++.|++|+...+..   ..+.. .+......+..-.             .+.++|+++. +..     ..
T Consensus        91 dg~~l~~~~~~~~l~~~d~~~~~~---~~~~~-~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~  166 (396)
T 3c5m_A           91 DERAFFYVKNELNLMKVDLETLEE---QVIYT-VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNP  166 (396)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCE---EEEEE-CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCC
T ss_pred             CCCEEEEEEcCCcEEEEECCCCCc---EEEEe-cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCC
Confidence            367888888889999999877621   11111 0000000000000             0456888887 443     46


Q ss_pred             CCcEEEEECCCCCCcccccceeeeeeeeeeeec-CCc-eEEeeCC------CeEEEEEcCCCceeeeEeeCc--ccceEE
Q 021744           86 NNHSNNYRAGNSKNSNINNRAVIKTDILCRNWV-QGN-CMYGEKC------KFLHSWTVGDGFKLLTQLEGH--QKVVSG  155 (308)
Q Consensus        86 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~g~~d------~~i~iwd~~~~~~~~~~~~~h--~~~v~~  155 (308)
                      +..|.+||+.+++..  ....+...+..+.|+| ++. +++.+.+      ..|.+|++.++ +. ..+..+  ...+..
T Consensus       167 ~~~l~~~d~~~g~~~--~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~~-~~l~~~~~~~~~~~  242 (396)
T 3c5m_A          167 TCRLIKVDIETGELE--VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS-NV-RKIKEHAEGESCTH  242 (396)
T ss_dssp             CEEEEEEETTTCCEE--EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC-CC-EESSCCCTTEEEEE
T ss_pred             cceEEEEECCCCcEE--eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC-ce-eEeeccCCCccccc
Confidence            678999999877543  2223334467788999 665 3443332      46888998765 32 233323  235788


Q ss_pred             EEEeCCCCEEEEeeCC-----CcEEEEeCCCCeEEEEEeCCCeeEEEEc-CCCEEEEEc-----------------CCcE
Q 021744          156 ITLPSGSDKLYSGSKD-----ETVRVWDCASGQCAGVINLGGEVGCMIS-EGPWIFIGV-----------------TNFV  212 (308)
Q Consensus       156 ~~~~~~~~~l~s~s~d-----g~v~~wd~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~-----------------d~~i  212 (308)
                      ++|+|+++.|+..+.+     +.|++||+.+++.............+++ ++++++.+.                 +..|
T Consensus       243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i  322 (396)
T 3c5m_A          243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFL  322 (396)
T ss_dssp             EEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEEEEEECSSSSEEEEEECCC----------CCCCCCEE
T ss_pred             eEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCCCCccCCCCceEEEecCCcceeeccccccccCCCCcE
Confidence            9999999988776554     4599999998876554433332244567 899877532                 3689


Q ss_pred             EEEEcCCCceeeeeCCCC-----------CEEEEEEeCC--EEEEE-cCCCeEEEEEcC
Q 021744          213 KAWNTQTNTDLSLSGPVG-----------QVYAMAVGND--LLFAG-TQDGAILAWKFN  257 (308)
Q Consensus       213 ~~wd~~~~~~~~~~~~~~-----------~v~~~~~~~~--~l~~g-~~dg~i~iwd~~  257 (308)
                      ++||+.+++...+..+..           .+..++|+|+  .|+.. ..++...+|.+.
T Consensus       323 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          323 YVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             EEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             EEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence            999999887766655544           2566889998  55544 445655555443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.52  E-value=2.9e-11  Score=109.07  Aligned_cols=251  Identities=7%  Similarity=-0.110  Sum_probs=165.1

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECC--CCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAG--NSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~--~~~~~~~  102 (308)
                      +.++++...+++|.++|..++           ........|.....+.|+|||++ ++++.|+.|.+||+.  +.+... 
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~-----------~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~-  234 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTY-----------EIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA-  234 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTC-----------CEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE-
T ss_pred             ceEEEEeCCCCeEEEEECCCC-----------eEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE-
Confidence            467788888999999998876           11111111111116899999999 778899999999995  554332 


Q ss_pred             ccceeeeeeeeeeee----cCCce--EEeeCCCeEEEEEcCCCceeeeEeeC----------ccc-ceEEEEEeCCCC-E
Q 021744          103 NNRAVIKTDILCRNW----VQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEG----------HQK-VVSGITLPSGSD-K  164 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~----~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~----------h~~-~v~~~~~~~~~~-~  164 (308)
                       ..........+.++    |+|..  ++...++.|.++|..+. +.+..+.-          |.. .+..+..++++. .
T Consensus       235 -~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~-~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~  312 (567)
T 1qks_A          235 -EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL-EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF  312 (567)
T ss_dssp             -EEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC-CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE
T ss_pred             -EEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC-cEEEEEeccccccccccccCCCceEEEEEcCCCCEE
Confidence             11112235678888    68866  44556799999999888 66666542          222 577888888765 4


Q ss_pred             EEEeeCCCcEEEEeCCCCeEE--EEEeCCCeeE--EEEcCCCEEEEEc--CCcEEEEEcCCCcee-eeeC-----CCCCE
Q 021744          165 LYSGSKDETVRVWDCASGQCA--GVINLGGEVG--CMISEGPWIFIGV--TNFVKAWNTQTNTDL-SLSG-----PVGQV  232 (308)
Q Consensus       165 l~s~s~dg~v~~wd~~~~~~~--~~~~~~~~v~--~~~~~~~~l~~~~--d~~i~~wd~~~~~~~-~~~~-----~~~~v  232 (308)
                      +++...+|.|.++|..+.+.+  ..+.......  .+.+++++++++.  ++.|.++|+.+++.. .+..     |.+.-
T Consensus       313 vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g  392 (567)
T 1qks_A          313 IVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRG  392 (567)
T ss_dssp             EEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTC
T ss_pred             EEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccc
Confidence            566677899999999876433  2333333322  3468899887654  789999999999876 3322     33222


Q ss_pred             EEEEEeCC---EEEEEc-CCCeEEEEEcCCCC---cccccceeccccCCC-eEEEEecCCCeEEEee
Q 021744          233 YAMAVGND---LLFAGT-QDGAILAWKFNVTT---NCFEPAASLKVHTDS-NRAHFSRDVTSLLGSV  291 (308)
Q Consensus       233 ~~~~~~~~---~l~~g~-~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~-v~~~~s~d~~~l~~s~  291 (308)
                      ..+ ++|+   .++++. .++.|.++|..+.+   ..++.++++...... +....+|++++|.++.
T Consensus       393 ~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~  458 (567)
T 1qks_A          393 ANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA  458 (567)
T ss_dssp             EEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred             eee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEec
Confidence            222 5786   445543 46899999998732   113566777654333 3337899999988754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.50  E-value=1.3e-10  Score=96.00  Aligned_cols=251  Identities=12%  Similarity=0.048  Sum_probs=157.8

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCcccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      +.+.++...++.|.+|+.. +.     +.....+  .   ..... .+++.++|.. ++...++.|..||.+ ++.....
T Consensus        26 g~l~v~~~~~~~v~~~d~~-~~-----~~~~~~~--~---~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~   93 (299)
T 2z2n_A           26 GKVWITQHKANMISCINLD-GK-----ITEYPLP--T---PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYT   93 (299)
T ss_dssp             SCEEEEETTTTEEEEECTT-CC-----EEEEECS--S---TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred             CCEEEEecCCCcEEEEcCC-CC-----eEEecCC--c---ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEe
Confidence            4566666668899999877 41     1100001  0   01122 7899999998 777778889999975 3211111


Q ss_pred             cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744          104 NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~  182 (308)
                      .......+..+.+.+++.. ++...++.|.+||. ++......+..+...+..+++++++...++...++.|..||. ++
T Consensus        94 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g  171 (299)
T 2z2n_A           94 LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SG  171 (299)
T ss_dssp             CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC
T ss_pred             CCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CC
Confidence            1111223667778888877 54556789999998 542222223334567899999999988887777889999998 66


Q ss_pred             eEEEE-Ee-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCceee--eeCCCCCEEEEEEeCC--EEEEEcCCCeEEE
Q 021744          183 QCAGV-IN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLS--LSGPVGQVYAMAVGND--LLFAGTQDGAILA  253 (308)
Q Consensus       183 ~~~~~-~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~--~~~~~~~v~~~~~~~~--~l~~g~~dg~i~i  253 (308)
                      +.... .. ....+..+  .+++++.++.. ++.|.+||. +++...  ...+...+.+++++++  ++++...++.|..
T Consensus       172 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~  250 (299)
T 2z2n_A          172 DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGR  250 (299)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred             cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEE
Confidence            55432 11 22233444  35677766665 789999999 666543  3334567899999988  5555557789999


Q ss_pred             EEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEE
Q 021744          254 WKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMF  296 (308)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~  296 (308)
                      ||.. +.   .....+..+...+.. ++ +++.+.++.....++
T Consensus       251 ~d~~-g~---~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~  289 (299)
T 2z2n_A          251 LTSN-NI---IEEYPIQIKSAEPHGICF-DGETIWFAMECDKIG  289 (299)
T ss_dssp             EETT-TE---EEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEE
T ss_pred             ECCC-Cc---eEEEeCCCCCCccceEEe-cCCCEEEEecCCcEE
Confidence            9983 31   111122344456777 88 888877765433333

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.49  E-value=3.6e-11  Score=98.08  Aligned_cols=222  Identities=9%  Similarity=-0.005  Sum_probs=144.0

Q ss_pred             eeEEecCCCe-e-eccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEee-
Q 021744           71 AKRFANNTWG-R-NNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLE-  147 (308)
Q Consensus        71 ~i~~s~~g~~-~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~-  147 (308)
                      .++++++|.. + +...++.|.+||..+....... ......+..+.+.+++....+..++.|.+||.... .. ..+. 
T Consensus        28 ~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~-~~-~~~~~  104 (270)
T 1rwi_B           28 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-FNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSN-NQ-TVLPF  104 (270)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEECC-----EECC-CCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCS-CC-EECCC
T ss_pred             ceEECCCCCEEEEccCCCCcEEEecCCCcccceEe-eCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCc-eE-eeeec
Confidence            7899999998 7 6578899999997654322111 11123466788888887744444889999998766 22 2222 


Q ss_pred             CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeE--EEEcCCCEEEEEc-CCcEEEEEcCCCcee
Q 021744          148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVG--CMISEGPWIFIGV-TNFVKAWNTQTNTDL  223 (308)
Q Consensus       148 ~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~--~~~~~~~~l~~~~-d~~i~~wd~~~~~~~  223 (308)
                      .....+..++++++++++++...++.|.+|+..+........ ......  ++.++++++++.. ++.|.+||..+....
T Consensus       105 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~  184 (270)
T 1rwi_B          105 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV  184 (270)
T ss_dssp             CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE
T ss_pred             CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE
Confidence            233578999999999888887788999999876554332211 111222  2346788666665 789999999877655


Q ss_pred             ee-eCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEe
Q 021744          224 SL-SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIG  298 (308)
Q Consensus       224 ~~-~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~  298 (308)
                      .. ..+...+..++++++  ++++...++.|.+|+....    ........+...+.. +++++|.++++.. +..|.+.
T Consensus       185 ~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~----~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~  260 (270)
T 1rwi_B          185 VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST----TSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL  260 (270)
T ss_dssp             ECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS----CCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             eecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC----cceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEE
Confidence            32 233367899999998  5666667889999998764    221212223345666 9999998666543 5555554


Q ss_pred             e
Q 021744          299 Q  299 (308)
Q Consensus       299 ~  299 (308)
                      .
T Consensus       261 ~  261 (270)
T 1rwi_B          261 T  261 (270)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.48  E-value=1.6e-11  Score=100.21  Aligned_cols=220  Identities=10%  Similarity=-0.021  Sum_probs=143.4

Q ss_pred             CCceE-EecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLST-ADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~-s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      +.+++ +.+.++.|.+|+......           ...+..+.... .+++.++|.. ++.. ++.|.+||.+.......
T Consensus        35 g~l~v~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~  102 (270)
T 1rwi_B           35 GNVYVTSEGMYGRVVKLATGSTGT-----------TVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL  102 (270)
T ss_dssp             CCEEEEECSSSCEEEEECC----------------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred             CCEEEEccCCCCcEEEecCCCccc-----------ceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee
Confidence            45666 557889999998765411           00001111122 6899999988 6666 88999999865433211


Q ss_pred             ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744          103 NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~  181 (308)
                      . ......+..+.+.+++.. ++...++.|.+|+..+. ............+..++++++++++++...++.|.+||...
T Consensus       103 ~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~  180 (270)
T 1rwi_B          103 P-FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK-TQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  180 (270)
T ss_dssp             C-CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCC-SCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             e-cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCc-eeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence            1 111133667788888877 55556789999976655 22222223334678999999998777777788999999887


Q ss_pred             CeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCceeeee-CCCCCEEEEEEeCC--EEEEEcCCCeEEEE
Q 021744          182 GQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLSLS-GPVGQVYAMAVGND--LLFAGTQDGAILAW  254 (308)
Q Consensus       182 ~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~-~~~~~v~~~~~~~~--~l~~g~~dg~i~iw  254 (308)
                      ........ .......+  .+++.++++.. ++.|.+||..+....... .+...+.+++++++  ++++...++.|+++
T Consensus       181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~  260 (270)
T 1rwi_B          181 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL  260 (270)
T ss_dssp             CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEE
Confidence            65443222 21333444  35676666665 779999998776544322 23357899999998  77788889999999


Q ss_pred             EcCCC
Q 021744          255 KFNVT  259 (308)
Q Consensus       255 d~~~~  259 (308)
                      ++...
T Consensus       261 ~~~~~  265 (270)
T 1rwi_B          261 TSLEH  265 (270)
T ss_dssp             CCCGG
T ss_pred             cCCCc
Confidence            98875

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.48  E-value=5.7e-11  Score=99.07  Aligned_cols=222  Identities=10%  Similarity=0.043  Sum_probs=144.7

Q ss_pred             eeEEecCCCe-ee-------ccCCCcEEEEECCCCCCccccc---ceeeeeeeeeeeecC-CceEEeeCCCeEEEEEcCC
Q 021744           71 AKRFANNTWG-RN-------NNFNNHSNNYRAGNSKNSNINN---RAVIKTDILCRNWVQ-GNCMYGEKCKFLHSWTVGD  138 (308)
Q Consensus        71 ~i~~s~~g~~-~s-------~~~d~~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~g~~d~~i~iwd~~~  138 (308)
                      .++|.++|.. ++       +..++.|.+||..+++......   ..+...+..+.+.++ +....+...+.|.+||.. 
T Consensus        22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-  100 (314)
T 1pjx_A           22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-  100 (314)
T ss_dssp             EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-
T ss_pred             CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-
Confidence            6899999988 77       6788999999987665421111   013344777888888 776555555588999988 


Q ss_pred             CceeeeE-ee---C-cccceEEEEEeCCCCEEEEeeCC---------------CcEEEEeCCCCeEEEEEeC-CCe-eEE
Q 021744          139 GFKLLTQ-LE---G-HQKVVSGITLPSGSDKLYSGSKD---------------ETVRVWDCASGQCAGVINL-GGE-VGC  196 (308)
Q Consensus       139 ~~~~~~~-~~---~-h~~~v~~~~~~~~~~~l~s~s~d---------------g~v~~wd~~~~~~~~~~~~-~~~-v~~  196 (308)
                      + +.... ..   + ....+.+++++++++++++...+               +.|..||.. ++....... ..+ -.+
T Consensus       101 g-~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~  178 (314)
T 1pjx_A          101 G-TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIA  178 (314)
T ss_dssp             S-CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEE
T ss_pred             C-CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEE
Confidence            6 33322 11   1 12457899999999888777655               567788776 554433332 112 223


Q ss_pred             EE----cCCCEEEEE-c-CCcEEEEEcC-CCcee------eeeCCC-CCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCC
Q 021744          197 MI----SEGPWIFIG-V-TNFVKAWNTQ-TNTDL------SLSGPV-GQVYAMAVGND--LLFAGTQDGAILAWKFNVTT  260 (308)
Q Consensus       197 ~~----~~~~~l~~~-~-d~~i~~wd~~-~~~~~------~~~~~~-~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~  260 (308)
                      +.    ++++.++++ . ++.|.+||+. +++..      .+..+. ..+..++++++  ++++...++.|.+||..++ 
T Consensus       179 ~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g-  257 (314)
T 1pjx_A          179 VRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG-  257 (314)
T ss_dssp             EEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB-
T ss_pred             EecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCC-
Confidence            45    677665544 4 7899999986 44321      233333 56889999998  5566567889999998865 


Q ss_pred             cccccceeccccCCCeEE-EEecCCCeEEEee--ceEEEEee
Q 021744          261 NCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV--SFIMFIGQ  299 (308)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~--s~~i~~~~  299 (308)
                         +.+..+..+...+.. +|+++++.|.++.  +..|+...
T Consensus       258 ---~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~  296 (314)
T 1pjx_A          258 ---QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             ---SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ---cEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence               445555555566777 9999998665444  23555543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.47  E-value=2.7e-11  Score=103.61  Aligned_cols=208  Identities=8%  Similarity=0.019  Sum_probs=128.1

Q ss_pred             cCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEE-ee----------CCCeEEEEEcCCCceeeeEeeCc---
Q 021744           84 NFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMY-GE----------KCKFLHSWTVGDGFKLLTQLEGH---  149 (308)
Q Consensus        84 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~----------~d~~i~iwd~~~~~~~~~~~~~h---  149 (308)
                      ..|++|.+||..+++.... ..... .. .+.++|++..++ +.          .++.|.+||+.+. +.+.++...   
T Consensus        28 ~~d~~v~v~D~~t~~~~~~-i~~g~-~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~-~~~~~i~~~~~~  103 (361)
T 2oiz_A           28 LTESRVHVYDYTNGKFLGM-VPTAF-NG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL-TFEKEISLPPKR  103 (361)
T ss_dssp             GGGCEEEEEETTTCCEEEE-EECCE-EE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC-CEEEEEEECTTB
T ss_pred             cccCeEEEEECCCCeEEEE-ecCCC-CC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC-cEEEEEEcCccc
Confidence            3578999999988865432 11222 23 789999997733 32          3678999999988 666666532   


Q ss_pred             ---ccceEEEEEeCCCCEEEEeeC--CCcEEEEeCCCCeEEEE-EeCCCeeE-EEEcCC-CEEE-EEcCC----------
Q 021744          150 ---QKVVSGITLPSGSDKLYSGSK--DETVRVWDCASGQCAGV-INLGGEVG-CMISEG-PWIF-IGVTN----------  210 (308)
Q Consensus       150 ---~~~v~~~~~~~~~~~l~s~s~--dg~v~~wd~~~~~~~~~-~~~~~~v~-~~~~~~-~~l~-~~~d~----------  210 (308)
                         ......++++|++++|+++..  +++|.+||+.+++.+.. +....... .+.+++ ..++ .+.|+          
T Consensus       104 ~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~  183 (361)
T 2oiz_A          104 VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGED  183 (361)
T ss_dssp             CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred             cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence               245678999999999988864  58999999999988887 54332211 112221 1111 11233          


Q ss_pred             --------------------------------------cEEEEEcCCCcee---eeeC------C----CCCEEEEEEeC
Q 021744          211 --------------------------------------FVKAWNTQTNTDL---SLSG------P----VGQVYAMAVGN  239 (308)
Q Consensus       211 --------------------------------------~i~~wd~~~~~~~---~~~~------~----~~~v~~~~~~~  239 (308)
                                                            .+.++|+......   .+..      +    ......++++|
T Consensus       184 g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~  263 (361)
T 2oiz_A          184 GKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR  263 (361)
T ss_dssp             SSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred             CcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec
Confidence                                                  3444444332211   0000      0    00011267888


Q ss_pred             C--EEEEEcC-----------CCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee--ceEEEEeecC
Q 021744          240 D--LLFAGTQ-----------DGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV--SFIMFIGQNN  301 (308)
Q Consensus       240 ~--~l~~g~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~--s~~i~~~~~~  301 (308)
                      +  .++++..           .+.|.+||+.+.    +.+.++..+.  ... +|+|||++|+++.  ++.+|-..+.
T Consensus       264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~----~~v~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t~  335 (361)
T 2oiz_A          264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK----QRVARIPGRD--ALSMTIDQQRNLMLTLDGGNVNVYDISQP  335 (361)
T ss_dssp             TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT----EEEEEEECTT--CCEEEEETTTTEEEEECSSCEEEEECSSS
T ss_pred             CCCeEEEEEccCCCcccccCCCceEEEEECCCC----cEEEEEecCC--eeEEEECCCCCEEEEeCCCeEEEEECCCC
Confidence            7  4443322           348999999987    7788888776  555 9999999998765  4444433333

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.47  E-value=2.4e-11  Score=113.67  Aligned_cols=224  Identities=9%  Similarity=-0.022  Sum_probs=144.7

Q ss_pred             eeEEecCCCe-eeccCC-----CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCC--------------
Q 021744           71 AKRFANNTWG-RNNNFN-----NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCK--------------  129 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~--------------  129 (308)
                      .++|||||+. |.++.+     .+|++||+++++....  .........+.|+|+ .. +++..++              
T Consensus       167 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~  243 (741)
T 1yr2_A          167 AWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQ  243 (741)
T ss_dssp             EEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCC
T ss_pred             eEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCC
Confidence            7899999998 544432     4699999998866421  111122356789999 55 5555443              


Q ss_pred             eEEEEEcCCCce---eeeEeeCcccceEEEEEeCCCCEEEEeeCCC-----cEEEEeCCCC--eEEEEEe-CC-CeeEEE
Q 021744          130 FLHSWTVGDGFK---LLTQLEGHQKVVSGITLPSGSDKLYSGSKDE-----TVRVWDCASG--QCAGVIN-LG-GEVGCM  197 (308)
Q Consensus       130 ~i~iwd~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg-----~v~~wd~~~~--~~~~~~~-~~-~~v~~~  197 (308)
                      .|++|++.++..   .+.....+...+..+.|+||+++|+..+.++     .|++||+.++  +....+. .. .....+
T Consensus       244 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~  323 (741)
T 1yr2_A          244 TVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV  323 (741)
T ss_dssp             EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE
T ss_pred             EEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE
Confidence            489999987631   2222223334688999999999988777544     8999999877  4133443 22 333344


Q ss_pred             EcCCCEEEEEc-----CCcEEEEEcCCC--ceee-eeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCccccccee
Q 021744          198 ISEGPWIFIGV-----TNFVKAWNTQTN--TDLS-LSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAAS  268 (308)
Q Consensus       198 ~~~~~~l~~~~-----d~~i~~wd~~~~--~~~~-~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~  268 (308)
                      +++++.|+..+     +..|.+||+.++  +... +..+...+..++++.+ ++++...|+..+||.+....   +....
T Consensus       324 ~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g---~~~~~  400 (741)
T 1yr2_A          324 DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDG---KPAGA  400 (741)
T ss_dssp             EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTS---CEEEE
T ss_pred             eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCC---Cceee
Confidence            67888777543     346999999874  3443 3444556777888866 88888899988887665211   33444


Q ss_pred             ccc-cCCCeEE-EEecCCCeEEEee-----ceEEEEeec
Q 021744          269 LKV-HTDSNRA-HFSRDVTSLLGSV-----SFIMFIGQN  300 (308)
Q Consensus       269 ~~~-~~~~v~~-~~s~d~~~l~~s~-----s~~i~~~~~  300 (308)
                      +.. +...+.. .++|+++.++.+.     ...+|.+..
T Consensus       401 l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  439 (741)
T 1yr2_A          401 VSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP  439 (741)
T ss_dssp             CBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred             ccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            543 3456666 8999988666322     356776653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.45  E-value=2.8e-11  Score=102.03  Aligned_cols=223  Identities=9%  Similarity=-0.028  Sum_probs=145.0

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG  148 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~  148 (308)
                      ++.|+|++.. +..+.+++++.|.-   +... ....+...+..+.+.+++.+ +++..++.|.+||..++ +.......
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~-~~~~~~~~   84 (333)
T 2dg1_A           10 TLFYSGKSNSAVPIISESELQTITA---EPWL-EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK-EIKRPFVS   84 (333)
T ss_dssp             BCCSCGGGGCSSCCCCGGGSCEEEC---EEEE-EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC-CEEEEEEC
T ss_pred             eeeecCCccceeEEeecccCccccc---ceeE-EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCC-cEEEEeeC
Confidence            5788888877 77788899999932   1111 11122223566788888877 56778899999999887 44443335


Q ss_pred             cccceEEEEEeCCCCEEEEeeCC----CcEEEEeCCCCeEEEEEe---CCCeeEEE--EcCCCEEEEEcC-------CcE
Q 021744          149 HQKVVSGITLPSGSDKLYSGSKD----ETVRVWDCASGQCAGVIN---LGGEVGCM--ISEGPWIFIGVT-------NFV  212 (308)
Q Consensus       149 h~~~v~~~~~~~~~~~l~s~s~d----g~v~~wd~~~~~~~~~~~---~~~~v~~~--~~~~~~l~~~~d-------~~i  212 (308)
                      +...+.+++++++++++++...+    +.|.+||.++++....+.   ....+..+  .++++++++...       +.|
T Consensus        85 ~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l  164 (333)
T 2dg1_A           85 HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGV  164 (333)
T ss_dssp             SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEE
T ss_pred             CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceE
Confidence            66789999999999888877766    689999998876654443   22334443  467887776552       456


Q ss_pred             EEEEcCCCceeeeeCCCCCEEEEEEeCC--EE-EEEcCCCeEEEEEcCCCCcccccc-----eeccccCCCeEE-EEecC
Q 021744          213 KAWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGTQDGAILAWKFNVTTNCFEPA-----ASLKVHTDSNRA-HFSRD  283 (308)
Q Consensus       213 ~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l-~~g~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~v~~-~~s~d  283 (308)
                      ..+|..+++...+......+..++|+|+  .+ ++.+.++.|.+||+.+.......+     ..+..+ ..+.. +++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~  243 (333)
T 2dg1_A          165 YYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSD  243 (333)
T ss_dssp             EEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTT
T ss_pred             EEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCC
Confidence            6777666655544333446789999998  44 555668899999996421100110     112222 34555 89999


Q ss_pred             CCeEEEee-ceEEEEee
Q 021744          284 VTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       284 ~~~l~~s~-s~~i~~~~  299 (308)
                      |.++++.. ...|+.+.
T Consensus       244 G~l~v~~~~~~~v~~~d  260 (333)
T 2dg1_A          244 DNLYVAMYGQGRVLVFN  260 (333)
T ss_dssp             CCEEEEEETTTEEEEEC
T ss_pred             CCEEEEEcCCCEEEEEC
Confidence            98777654 34555554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.44  E-value=5.6e-11  Score=98.54  Aligned_cols=212  Identities=11%  Similarity=0.073  Sum_probs=139.7

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCcccccc-c-eeEEecCCCe-eeccCCCcEEEEECCCCCCcccc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGA-A-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~-~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      .+++++..++.|..|+...+ .  ..+           ..+.. . .++++|+|.+ ++...++.|.+||..+++.....
T Consensus        41 ~l~~~~~~~~~i~~~~~~~~-~--~~~-----------~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~  106 (296)
T 3e5z_A           41 AVIFSDVRQNRTWAWSDDGQ-L--SPE-----------MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIA  106 (296)
T ss_dssp             EEEEEEGGGTEEEEEETTSC-E--EEE-----------ESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCC-e--EEE-----------ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEe
Confidence            47889999999999998764 1  000           01111 2 7899999999 77777789999999776532111


Q ss_pred             c---ceeeeeeeeeeeecCCce-EE----ee-------------CCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCC
Q 021744          104 N---RAVIKTDILCRNWVQGNC-MY----GE-------------KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS  162 (308)
Q Consensus       104 ~---~~~~~~~~~~~~~~~~~~-~~----g~-------------~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~  162 (308)
                      .   ......+..+.+.++|.+ ++    |.             ..+.|..++.. + + +..+..+......++|+|++
T Consensus       107 ~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-~-~~~~~~~~~~~~gi~~s~dg  183 (296)
T 3e5z_A          107 DSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-T-LSAPIRDRVKPNGLAFLPSG  183 (296)
T ss_dssp             CEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-C-EEEEECCCSSEEEEEECTTS
T ss_pred             eccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C-C-EEEeecCCCCCccEEECCCC
Confidence            1   011122566888899987 43    33             13466666655 3 2 34455566778999999999


Q ss_pred             CEEEEeeCCCcEEEEeCC-CCeE---EEEEe-CCCee--EEEEcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEE
Q 021744          163 DKLYSGSKDETVRVWDCA-SGQC---AGVIN-LGGEV--GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAM  235 (308)
Q Consensus       163 ~~l~s~s~dg~v~~wd~~-~~~~---~~~~~-~~~~v--~~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~  235 (308)
                      +.+++.+.++.|.+|++. +++.   ...+. .....  .++.++++++++. ++.|.+||........+..+.. +.++
T Consensus       184 ~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~g~~~~~~~~~~~-~~~~  261 (296)
T 3e5z_A          184 NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPDGDELGRVLTPQT-TSNL  261 (296)
T ss_dssp             CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTTSCEEEEEECSSC-CCEE
T ss_pred             CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCCCCEEEEEECCCC-ceeE
Confidence            988888888999999987 4554   23332 11122  2345788877766 8899999987433336666666 8999


Q ss_pred             EEe-CC--EEEEEcCCCeEEEEEcCC
Q 021744          236 AVG-ND--LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       236 ~~~-~~--~l~~g~~dg~i~iwd~~~  258 (308)
                      +|. |+  .|++++.+ .+.-++..+
T Consensus       262 ~f~~~d~~~L~v~t~~-~l~~~~~~~  286 (296)
T 3e5z_A          262 CFGGPEGRTLYMTVST-EFWSIETNV  286 (296)
T ss_dssp             EEESTTSCEEEEEETT-EEEEEECSC
T ss_pred             EEECCCCCEEEEEcCC-eEEEEEccc
Confidence            994 67  67777665 444555555

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.43  E-value=1.1e-11  Score=115.15  Aligned_cols=221  Identities=9%  Similarity=-0.046  Sum_probs=134.9

Q ss_pred             CCceE-----EecCCCeEEEeecCCCCCCCCCcccccCCC-CCCccccccceeEEecCCCe-eeccCCCc----------
Q 021744           26 GGLST-----ADTRQKVCNYWRAGKCNRFPCPYLHRELPL-PPAATANGAAAKRFANNTWG-RNNNFNNH----------   88 (308)
Q Consensus        26 ~~~~~-----s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~-~~~~~gh~~~~i~~s~~g~~-~s~~~d~~----------   88 (308)
                      |.+||     +|+.+.+|++||+.++.           .. .....+.....++|+|||+. +.++.|..          
T Consensus       132 G~~la~~~~~~G~~~~~i~v~dl~tg~-----------~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~  200 (695)
T 2bkl_A          132 GKKVAFAQKPNAADEAVLHVIDVDSGE-----------WSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPG  200 (695)
T ss_dssp             SSEEEEEEEETTCSCCEEEEEETTTCC-----------BCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGG
T ss_pred             CCEEEEEECCCCCceEEEEEEECCCCC-----------CcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCC
Confidence            55666     45556899999998872           11 11111111125899999998 88888776          


Q ss_pred             ---EEEEECCCCCCccc---ccceeeeeeeeeeeecCCce-EEeeCCC----eEEEEEcCCCceeeeEeeCcccceEEEE
Q 021744           89 ---SNNYRAGNSKNSNI---NNRAVIKTDILCRNWVQGNC-MYGEKCK----FLHSWTVGDGFKLLTQLEGHQKVVSGIT  157 (308)
Q Consensus        89 ---i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~g~~d~----~i~iwd~~~~~~~~~~~~~h~~~v~~~~  157 (308)
                         |++|++.+++....   ....+...+..+.++++|.. +..+.++    .|++|+..++ + ...+..+...+....
T Consensus       201 ~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~-~-~~~l~~~~~~~~~~~  278 (695)
T 2bkl_A          201 YTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK-D-FRLLVKGVGAKYEVH  278 (695)
T ss_dssp             GCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS-S-CEEEEECSSCCEEEE
T ss_pred             CCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC-c-eEEeecCCCceEEEE
Confidence               99999987753211   11122234667889999966 4444444    6777766554 2 445555666666666


Q ss_pred             EeCCCCEEEEee---CCCcEEEEeCCCCeE---EEEEeC--CCeeEEE-EcCCCEEEEEc-CCcEEEE--EcCCCceeee
Q 021744          158 LPSGSDKLYSGS---KDETVRVWDCASGQC---AGVINL--GGEVGCM-ISEGPWIFIGV-TNFVKAW--NTQTNTDLSL  225 (308)
Q Consensus       158 ~~~~~~~l~s~s---~dg~v~~wd~~~~~~---~~~~~~--~~~v~~~-~~~~~~l~~~~-d~~i~~w--d~~~~~~~~~  225 (308)
                      + +++.++++..   .++.|.+||+.+++.   ...+.+  ...+..+ +.++.++++.. ++..++|  ++.......+
T Consensus       279 ~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l  357 (695)
T 2bkl_A          279 A-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTV  357 (695)
T ss_dssp             E-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEEC
T ss_pred             e-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEe
Confidence            6 4555444444   257899999987753   333433  3345544 34555666555 7766666  4433333345


Q ss_pred             eCC-CCCEEEEEEeCC--EEE-E---EcCCCeEEEEEcCCCC
Q 021744          226 SGP-VGQVYAMAVGND--LLF-A---GTQDGAILAWKFNVTT  260 (308)
Q Consensus       226 ~~~-~~~v~~~~~~~~--~l~-~---g~~dg~i~iwd~~~~~  260 (308)
                      ..+ ...+..++++|+  .++ +   ....+.|++||+.+++
T Consensus       358 ~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          358 QLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             CCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            444 566778888887  333 2   2345789999998764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.42  E-value=3.5e-11  Score=112.06  Aligned_cols=223  Identities=10%  Similarity=0.018  Sum_probs=141.1

Q ss_pred             CCceEEecCCC-----eEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCc-----------
Q 021744           26 GGLSTADTRQK-----VCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNH-----------   88 (308)
Q Consensus        26 ~~~~~s~s~d~-----~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~-----------   88 (308)
                      |.+||.++.++     +|++||+.++.           .............++|+|||+. +.++.++.           
T Consensus       136 g~~la~~~~~~G~~~~~i~v~d~~tg~-----------~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~  204 (710)
T 2xdw_A          136 GEYFAYGLSASGSDWVTIKFMKVDGAK-----------ELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (710)
T ss_dssp             SSEEEEEEEETTCSCEEEEEEETTTTE-----------EEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             CCEEEEEEcCCCCceEEEEEEECCCCC-----------CCcccccCcccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence            55666554432     89999998871           1111111111115899999998 77777665           


Q ss_pred             -----EEEEECCCCCCccccc---ceeeeeeeeeeeecCCce-EEeeC-----CCeEEEEEcCC------CceeeeEeeC
Q 021744           89 -----SNNYRAGNSKNSNINN---RAVIKTDILCRNWVQGNC-MYGEK-----CKFLHSWTVGD------GFKLLTQLEG  148 (308)
Q Consensus        89 -----i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~g~~-----d~~i~iwd~~~------~~~~~~~~~~  148 (308)
                           |++|++.+++......   ..+......+.++|+|.. +..+.     +..|++||+.+      +......+..
T Consensus       205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~  284 (710)
T 2xdw_A          205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID  284 (710)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred             CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC
Confidence                 9999998765321111   112223567889999976 33332     67899999986      4224566777


Q ss_pred             cccceEEEEEeCCCCEEEEeeCC----CcEEEEeCCCCeE---EEEEeCCC--eeEEE-Ec-CCCEEEEEc-CC--cEEE
Q 021744          149 HQKVVSGITLPSGSDKLYSGSKD----ETVRVWDCASGQC---AGVINLGG--EVGCM-IS-EGPWIFIGV-TN--FVKA  214 (308)
Q Consensus       149 h~~~v~~~~~~~~~~~l~s~s~d----g~v~~wd~~~~~~---~~~~~~~~--~v~~~-~~-~~~~l~~~~-d~--~i~~  214 (308)
                      +...+.. .|+|++..|+..+..    ..|.+||+.+++.   ...+.+..  .+..+ +. ++.++++.. ++  .|.+
T Consensus       285 ~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~  363 (710)
T 2xdw_A          285 NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL  363 (710)
T ss_dssp             SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred             CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEE
Confidence            7766655 488888887666553    3699999988642   22333333  45444 34 455555555 66  5778


Q ss_pred             EEcCCCcee-eeeCCCCCEEEEEEeCC--EEE-EEc---CCCeEEEEEcCCCC
Q 021744          215 WNTQTNTDL-SLSGPVGQVYAMAVGND--LLF-AGT---QDGAILAWKFNVTT  260 (308)
Q Consensus       215 wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~-~g~---~dg~i~iwd~~~~~  260 (308)
                      ||+.+++.. .+..+...+..++++|+  .++ +.+   ..+.|+.||+.+++
T Consensus       364 ~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          364 HDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            888677654 66667778889999987  333 322   35789999998763

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.40  E-value=1.2e-09  Score=90.23  Aligned_cols=227  Identities=10%  Similarity=-0.022  Sum_probs=148.0

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG  148 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~  148 (308)
                      ++++.++|.. ++...++.|.+||.. ++............+..+.+.+++.. ++...++.|..|+.... .....+..
T Consensus        19 ~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~~   96 (299)
T 2z2n_A           19 GITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI-IKEYTLPN   96 (299)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEECSS
T ss_pred             ceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc-EEEEeCCC
Confidence            6899999999 776668899999987 43321111112234677788888877 44445788999998632 21222223


Q ss_pred             cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe--CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee
Q 021744          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN--LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL  223 (308)
Q Consensus       149 h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~--~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~  223 (308)
                      ....+..+++++++.++++...++.|..||. +++......  ....+..+  .++++++++.. ++.|..||. +++..
T Consensus        97 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~  174 (299)
T 2z2n_A           97 PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT  174 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE
Confidence            4567899999999988888777889999998 555443222  22334444  35677777665 679999999 66655


Q ss_pred             e--eeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEe-eceEEEE
Q 021744          224 S--LSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGS-VSFIMFI  297 (308)
Q Consensus       224 ~--~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s-~s~~i~~  297 (308)
                      .  .......+..++++++  ++++...++.|.+||. ++..  .. ..+..+...+.. +++++|.++++. ....|+.
T Consensus       175 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~--~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~  250 (299)
T 2z2n_A          175 EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI--TE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGR  250 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE--EE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred             EeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE--EE-EECCCCCCCceeEEECCCCCEEEeccCCceEEE
Confidence            3  3334557889999988  5566666889999998 5421  11 122334456667 899999876665 3455555


Q ss_pred             eecCceeE
Q 021744          298 GQNNKGVV  305 (308)
Q Consensus       298 ~~~~~~~~  305 (308)
                      ...+..+.
T Consensus       251 ~d~~g~~~  258 (299)
T 2z2n_A          251 LTSNNIIE  258 (299)
T ss_dssp             EETTTEEE
T ss_pred             ECCCCceE
Confidence            55444443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.39  E-value=1.8e-09  Score=89.15  Aligned_cols=251  Identities=11%  Similarity=0.055  Sum_probs=156.4

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCcccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      +.+.++...++.|.+|+.. +.     +..  .+.+.   +.... .+++.++|.. ++...++.|..+|.+ ++.....
T Consensus        31 g~l~v~~~~~~~v~~~~~~-~~-----~~~--~~~~~---~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~   98 (300)
T 2qc5_A           31 GKVWFTQHKANKISSLDQS-GR-----IKE--FEVPT---PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYP   98 (300)
T ss_dssp             SCEEEEETTTTEEEEECTT-SC-----EEE--EECSS---TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred             CCEEEEcCCCCeEEEECCC-Cc-----eEE--EECCC---CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEec
Confidence            5567777778899999877 41     110  01110   11122 7889999988 777778889999986 4332111


Q ss_pred             cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744          104 NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~  182 (308)
                      .......+..+.+.+++.. ++...++.|..++.. +......+......+..+++++++++.++...++.|..+|. ++
T Consensus        99 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g  176 (300)
T 2qc5_A           99 LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TG  176 (300)
T ss_dssp             CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC
T ss_pred             CCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CC
Confidence            1111233667777788877 444457899999987 52222223334567899999999987777766889999998 55


Q ss_pred             eEEEEEeC---CCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCceee--eeCCCCCEEEEEEeCC--EEEEEcCCCeEE
Q 021744          183 QCAGVINL---GGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLS--LSGPVGQVYAMAVGND--LLFAGTQDGAIL  252 (308)
Q Consensus       183 ~~~~~~~~---~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~--~~~~~~~v~~~~~~~~--~l~~g~~dg~i~  252 (308)
                      +... +..   ......+  .+++++.++.. .+.|.+||. +++...  +......+.+++++++  ++++...++.|.
T Consensus       177 ~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~  254 (300)
T 2qc5_A          177 KLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIG  254 (300)
T ss_dssp             CEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEE
T ss_pred             cEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEE
Confidence            5443 331   2234444  35677766665 668999998 555443  3334567899999988  555555678999


Q ss_pred             EEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEEE
Q 021744          253 AWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMFI  297 (308)
Q Consensus       253 iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~  297 (308)
                      .||.. +.   .....+......+.. ++.++|.+.++... .|+.
T Consensus       255 ~~~~~-g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~i~~  295 (300)
T 2qc5_A          255 RITND-NT---IQEYQLQTENAEPHGITFGKDGSVWFALKC-KIGK  295 (300)
T ss_dssp             EECTT-SC---EEEEECCSTTCCCCCEEECTTSCEEEECSS-EEEE
T ss_pred             EECCC-Cc---EEEEECCccCCccceeEeCCCCCEEEEccC-ceEE
Confidence            99984 31   111222223344555 88889886665543 4443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.33  E-value=6.7e-10  Score=93.95  Aligned_cols=192  Identities=11%  Similarity=0.016  Sum_probs=118.9

Q ss_pred             CCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCC---C--eEEEEEcCCCceeeeEeeCcccceEEEEE
Q 021744           85 FNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKC---K--FLHSWTVGDGFKLLTQLEGHQKVVSGITL  158 (308)
Q Consensus        85 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d---~--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~  158 (308)
                      .+..|.+||+++++...  .    ..+....|+|+|.. ++.+.+   +  .|.+|++.++ +...... +.. +..++|
T Consensus        41 ~~~~l~~~d~~~~~~~~--l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g-~~~~l~~-~~~-~~~~~w  111 (347)
T 2gop_A           41 YENTIVIENLKNNARRF--I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL-SSKKILE-AKN-IRSLEW  111 (347)
T ss_dssp             EEEEEEEEETTTCCEEE--E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT-EEEEEEE-ESE-EEEEEE
T ss_pred             ccceEEEEeCCCCceEE--c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC-ceEEEEc-CCC-ccceeE
Confidence            36779999998765321  1    45677899999975 444432   3  4888888877 4444333 334 999999


Q ss_pred             eCCCCEEEEeeCC---------------------------CcEEEEeCCCCeEEEEEeCCCeeE--EEEcCCCEEEEEc-
Q 021744          159 PSGSDKLYSGSKD---------------------------ETVRVWDCASGQCAGVINLGGEVG--CMISEGPWIFIGV-  208 (308)
Q Consensus       159 ~~~~~~l~s~s~d---------------------------g~v~~wd~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~-  208 (308)
                      +|+++.|+.++.+                           ..|.+||+.+++.+..+..+ .+.  .+++++ +++++. 
T Consensus       112 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~  189 (347)
T 2gop_A          112 NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPH  189 (347)
T ss_dssp             CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEEC
T ss_pred             CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEec
Confidence            9999988887642                           57999999988874444322 222  346788 666653 


Q ss_pred             C------C-cEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCC--------CeEEEEEcCCCCcccccceeccc
Q 021744          209 T------N-FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQD--------GAILAWKFNVTTNCFEPAASLKV  271 (308)
Q Consensus       209 d------~-~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~d--------g~i~iwd~~~~~~~~~~~~~~~~  271 (308)
                      +      . ...+|.+.+++...+..+ ..+..+  +|+  .|+..+.+        ..|.+||  ++    +.......
T Consensus       190 ~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~----~~~~l~~~  260 (347)
T 2gop_A          190 REIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK----EVMGILDE  260 (347)
T ss_dssp             CCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS----CEEESSTT
T ss_pred             ccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC----ceEecccc
Confidence            2      2 334443336665555444 555554  888  56555533        4677787  33    33333345


Q ss_pred             cCCCeE-E-EEecCCCeEEEee---ceEEEEee
Q 021744          272 HTDSNR-A-HFSRDVTSLLGSV---SFIMFIGQ  299 (308)
Q Consensus       272 ~~~~v~-~-~~s~d~~~l~~s~---s~~i~~~~  299 (308)
                      +...+. . .|+ |+ +++++.   ...|| ..
T Consensus       261 ~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          261 VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred             CCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence            556666 3 888 88 555443   45666 54

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.32  E-value=1.3e-10  Score=99.38  Aligned_cols=171  Identities=9%  Similarity=-0.062  Sum_probs=120.1

Q ss_pred             eeeeeeeecCCce-EEeeCCCeEEEEEcCCCc----------eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 021744          110 TDILCRNWVQGNC-MYGEKCKFLHSWTVGDGF----------KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (308)
Q Consensus       110 ~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd  178 (308)
                      .+..+++++.... ++|+.+ .+++|++.+..          +..... .+.. |+.++|  ++++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            4677888888766 555555 56669875431          111222 3566 999999  88899888 889999999


Q ss_pred             CCCCeEEEEEe-CCCeeEEEEcC-CCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEc
Q 021744          179 CASGQCAGVIN-LGGEVGCMISE-GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKF  256 (308)
Q Consensus       179 ~~~~~~~~~~~-~~~~v~~~~~~-~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~  256 (308)
                      +.+........ +...+..+.+- ..++++..||.|.+||+++++...   +...|++++|+|+-++.|..||.+++|+.
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~  189 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQLAVLLKDRSFQSFAW  189 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred             chhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCceEEEEcCCcEEEEcC
Confidence            98765544443 55556655322 234445569999999999887654   34589999999996677889999999988


Q ss_pred             CCCCcccccceec------c---ccCCCeEE-EEecCCCeEEEee
Q 021744          257 NVTTNCFEPAASL------K---VHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       257 ~~~~~~~~~~~~~------~---~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      .....  ....++      .   +|...|.+ .|.+++.++++-.
T Consensus       190 ~~~~~--~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          190 RNGEM--EKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             ETTEE--EEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             CCccc--cccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            87521  003333      2   36778888 9999999988643

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.31  E-value=3.9e-09  Score=95.17  Aligned_cols=180  Identities=6%  Similarity=-0.049  Sum_probs=128.8

Q ss_pred             cCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcC--CCceeeeEeeCccc
Q 021744           76 NNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVG--DGFKLLTQLEGHQK  151 (308)
Q Consensus        76 ~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~--~~~~~~~~~~~h~~  151 (308)
                      |.+.. ++...+++|.++|..+++.+....  ....+..+.++|++.. ++++.|+.|.+||+.  +. +.+.++.... 
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~--~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~~G~-  240 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLD--TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIKIGS-  240 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEECCS-
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEe--CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEecCC-
Confidence            43444 888889999999998886653221  2223557889999977 667789999999995  66 6677776533 


Q ss_pred             ceEEEEEe----CCCCEEEEeeC-CCcEEEEeCCCCeEEEEEeCCC------------eeEEE--EcCCCEEEEE-c-CC
Q 021744          152 VVSGITLP----SGSDKLYSGSK-DETVRVWDCASGQCAGVINLGG------------EVGCM--ISEGPWIFIG-V-TN  210 (308)
Q Consensus       152 ~v~~~~~~----~~~~~l~s~s~-dg~v~~wd~~~~~~~~~~~~~~------------~v~~~--~~~~~~l~~~-~-d~  210 (308)
                      ....++|+    |++++++++.+ +++|.++|..+.+.+..+....            .+..+  ++++..+++. . +|
T Consensus       241 ~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g  320 (567)
T 1qks_A          241 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG  320 (567)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCC
Confidence            45799999    69998876655 5899999999999998876321            23333  3444554433 3 78


Q ss_pred             cEEEEEcCCCcee--eeeCCCCCEEEEEEeCC--E-EEEEcCCCeEEEEEcCCC
Q 021744          211 FVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--L-LFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       211 ~i~~wd~~~~~~~--~~~~~~~~v~~~~~~~~--~-l~~g~~dg~i~iwd~~~~  259 (308)
                      .|.++|....+..  ...........+.|+|+  + +++...++.|.++|+.++
T Consensus       321 ~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~  374 (567)
T 1qks_A          321 KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  374 (567)
T ss_dssp             EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             eEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence            9999998876433  22233456778999998  4 455557889999999987

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.30  E-value=4.7e-09  Score=87.03  Aligned_cols=211  Identities=6%  Similarity=-0.038  Sum_probs=136.7

Q ss_pred             eeEEecCCC-e-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744           71 AKRFANNTW-G-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEG  148 (308)
Q Consensus        71 ~i~~s~~g~-~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~  148 (308)
                      ...|+|++. . ++...++.|..||..+++..   .......+..+.+.+++.++.+. +..|.+||..++ +.......
T Consensus        17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~---~~~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g-~~~~~~~~   91 (297)
T 3g4e_A           17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ---RVTMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQ-SAVVLATV   91 (297)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTCCEE---EEECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTT-EEEEEEEC
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCcEE---EEeCCCceEEEEECCCCCEEEEE-CCeEEEEECCCC-cEEEEEec
Confidence            578888655 4 78788899999999766432   11223347778889999875555 578999999877 33222211


Q ss_pred             ----cccceEEEEEeCCCCEEEEeeCC---------CcEEEEeCCC-CeEEEEEeCCCee--EEEEcCCCEEEEE-c-CC
Q 021744          149 ----HQKVVSGITLPSGSDKLYSGSKD---------ETVRVWDCAS-GQCAGVINLGGEV--GCMISEGPWIFIG-V-TN  210 (308)
Q Consensus       149 ----h~~~v~~~~~~~~~~~l~s~s~d---------g~v~~wd~~~-~~~~~~~~~~~~v--~~~~~~~~~l~~~-~-d~  210 (308)
                          ....+..++++|+++++++....         ..-.+|.+.. ++...........  .++.++++.|++. . ++
T Consensus        92 ~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~  171 (297)
T 3g4e_A           92 DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSY  171 (297)
T ss_dssp             CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGT
T ss_pred             CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCC
Confidence                12457889999999976654322         2334554432 3333322221222  2345788877644 4 78


Q ss_pred             cEEEEEc--CCCcee------eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-E
Q 021744          211 FVKAWNT--QTNTDL------SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-H  279 (308)
Q Consensus       211 ~i~~wd~--~~~~~~------~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~  279 (308)
                      .|.+||+  .++...      .+..+...+..+++.++  +.++....+.|..||..++    +.+..+..+...+++ +
T Consensus       172 ~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG----~~~~~i~~p~~~~t~~~  247 (297)
T 3g4e_A          172 SVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG----KRLQTVKLPVDKTTSCC  247 (297)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC----CEEEEEECSSSBEEEEE
T ss_pred             cEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc----eEEEEEECCCCCceEEE
Confidence            9999997  455432      22233456889999988  5555566788999999876    666777766666777 9


Q ss_pred             Ee-cCCCeEEEe
Q 021744          280 FS-RDVTSLLGS  290 (308)
Q Consensus       280 ~s-~d~~~l~~s  290 (308)
                      |. ||++.|.++
T Consensus       248 f~g~d~~~L~vt  259 (297)
T 3g4e_A          248 FGGKNYSEMYVT  259 (297)
T ss_dssp             EESGGGCEEEEE
T ss_pred             EeCCCCCEEEEE
Confidence            98 888777633

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.30  E-value=1.1e-09  Score=94.03  Aligned_cols=228  Identities=12%  Similarity=0.045  Sum_probs=137.5

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCeeeccCCCcEEEEECCCCCCcccccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNR  105 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~  105 (308)
                      +..+..++.++.|..+|..+++.     +.. .+.....    .....+ .++..+.++.++.|..+|..+++..-....
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~-----~W~-~~~~~~~----~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~  171 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTV-----AWQ-TKVAGEA----LSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNL  171 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCE-----EEE-EECSSCC----CSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCE-----EEE-EeCCCce----EcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeC
Confidence            45677788899999999887721     100 0111000    001122 233337778899999999988865422111


Q ss_pred             eeeee---eeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccc----------e-EEEEEeCCCCEEEEeeCC
Q 021744          106 AVIKT---DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV----------V-SGITLPSGSDKLYSGSKD  171 (308)
Q Consensus       106 ~~~~~---~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~----------v-~~~~~~~~~~~l~s~s~d  171 (308)
                      .....   ........++..+.+..++.+..+|..++ +.+.........          + ....+  .+..++.++.+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~  248 (376)
T 3q7m_A          172 DMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQG-QMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYN  248 (376)
T ss_dssp             CC-----CCCCCCEEETTEEEECCTTTEEEEEETTTC-CEEEEEECCC-----------CCCCCCEE--ETTEEEEECTT
T ss_pred             CCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCC-cEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecC
Confidence            10000   00111122456677888999999999998 565555422110          1 11111  24678888889


Q ss_pred             CcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEEcCCCcee-eee-CCCCCEEEEEEeCCEEEEEcCCC
Q 021744          172 ETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLS-GPVGQVYAMAVGNDLLFAGTQDG  249 (308)
Q Consensus       172 g~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~-~~~-~~~~~v~~~~~~~~~l~~g~~dg  249 (308)
                      +.+..+|.++++.+..............++.+++...++.+..+|.++++.. ... .....+.+.....+.|+.++.+|
T Consensus       249 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g  328 (376)
T 3q7m_A          249 GNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEG  328 (376)
T ss_dssp             SCEEEEETTTCCEEEEECCCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTS
T ss_pred             cEEEEEECCCCcEEeeccCCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCC
Confidence            9999999999998887765443332233444444555889999999999887 333 12223334445555888889999


Q ss_pred             eEEEEEcCCCCcccccceeccc
Q 021744          250 AILAWKFNVTTNCFEPAASLKV  271 (308)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~  271 (308)
                      .|.++|..++    +.+.....
T Consensus       329 ~l~~~d~~tG----~~~~~~~~  346 (376)
T 3q7m_A          329 YLHWINVEDG----RFVAQQKV  346 (376)
T ss_dssp             EEEEEETTTC----CEEEEEEC
T ss_pred             eEEEEECCCC----cEEEEEec
Confidence            9999999987    44444443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.30  E-value=1.1e-08  Score=87.59  Aligned_cols=240  Identities=10%  Similarity=-0.014  Sum_probs=145.2

Q ss_pred             eEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eecc----------CCCcEEEEECCCCCCcccccc
Q 021744           37 VCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNN----------FNNHSNNYRAGNSKNSNINNR  105 (308)
Q Consensus        37 ~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~----------~d~~i~vwd~~~~~~~~~~~~  105 (308)
                      +|.++|..++.     .+ ...+.     |... .++++|||+. +.+.          .+++|.+||..+.+.......
T Consensus        48 ~v~v~D~~t~~-----~~-~~i~~-----g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~  115 (373)
T 2mad_H           48 QQWVLDAGSGS-----IL-GHVNG-----GFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL  115 (373)
T ss_pred             EEEEEECCCCe-----EE-EEecC-----CCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEEC
Confidence            88999988761     11 11221     2222 5899999998 4443          367899999987654432111


Q ss_pred             e------eeeeeeeeeeecCCce-EEee-C-CCeEEEEEcCCCceeeeE-eeCcccceEEEEEeCCC-CEEEEeeCCCcE
Q 021744          106 A------VIKTDILCRNWVQGNC-MYGE-K-CKFLHSWTVGDGFKLLTQ-LEGHQKVVSGITLPSGS-DKLYSGSKDETV  174 (308)
Q Consensus       106 ~------~~~~~~~~~~~~~~~~-~~g~-~-d~~i~iwd~~~~~~~~~~-~~~h~~~v~~~~~~~~~-~~l~s~s~dg~v  174 (308)
                      .      .......+.++|+|.. +.+. . ++.|.++| .++ +.+.. +.. ..   ++.+.|++ ..+++.+.||.+
T Consensus       116 ~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~-~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~  189 (373)
T 2mad_H          116 PDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG-SSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGL  189 (373)
T ss_pred             CCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC-CEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCE
Confidence            1      0122456789999977 3343 2 57899999 888 66666 542 22   24455554 456777889999


Q ss_pred             EEEeCCCCeEEEEEe------CCCeeE---EEEcC-CCEEEEEcCCcEEEEEcCCCcee---eeeC----------CCCC
Q 021744          175 RVWDCASGQCAGVIN------LGGEVG---CMISE-GPWIFIGVTNFVKAWNTQTNTDL---SLSG----------PVGQ  231 (308)
Q Consensus       175 ~~wd~~~~~~~~~~~------~~~~v~---~~~~~-~~~l~~~~d~~i~~wd~~~~~~~---~~~~----------~~~~  231 (308)
                      .++|. +++.+....      ...++.   .+.++ ++++++...+.+.+.|+.+....   .+..          ....
T Consensus       190 ~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g  268 (373)
T 2mad_H          190 AKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGG  268 (373)
T ss_pred             EEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCc
Confidence            99999 877664332      111111   12333 44455556789999999765322   1110          1123


Q ss_pred             EEEEEEeCC--EEEEEcC----------CCeEEEEEcCCCCcccccceeccccCCCeEEEEecCCC-eEEEee--ceEEE
Q 021744          232 VYAMAVGND--LLFAGTQ----------DGAILAWKFNVTTNCFEPAASLKVHTDSNRAHFSRDVT-SLLGSV--SFIMF  296 (308)
Q Consensus       232 v~~~~~~~~--~l~~g~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~s~d~~-~l~~s~--s~~i~  296 (308)
                      ...+.++|+  .+.....          .+.|.++|+.+.    +.+.++.....+...+|+|||+ .++++.  +..|.
T Consensus       269 ~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~----~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~  344 (373)
T 2mad_H          269 WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG----QTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLH  344 (373)
T ss_pred             eEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC----EEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEE
Confidence            445788888  4444322          357999999986    6677775443343349999999 566543  45555


Q ss_pred             Eee
Q 021744          297 IGQ  299 (308)
Q Consensus       297 ~~~  299 (308)
                      +..
T Consensus       345 ViD  347 (373)
T 2mad_H          345 IYD  347 (373)
T ss_pred             EEE
Confidence            544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.29  E-value=1.4e-08  Score=83.67  Aligned_cols=226  Identities=10%  Similarity=-0.006  Sum_probs=145.0

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG  148 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~  148 (308)
                      .+++.++|.. ++...++.|.+||.. ++............+..+.+.+++.. ++...++.|..+|.. +......+..
T Consensus        24 ~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~  101 (300)
T 2qc5_A           24 GITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQ  101 (300)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSS
T ss_pred             eeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCC
Confidence            7899999999 777778999999987 43321111111133667777788877 444457889999988 5222222232


Q ss_pred             cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEE-Ee-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee
Q 021744          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV-IN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL  223 (308)
Q Consensus       149 h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~-~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~  223 (308)
                      ....+..+++++++.++++...++.|..+|.. ++.... +. .......+  .+++++.++.. ++.|..+|. +++..
T Consensus       102 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~  179 (300)
T 2qc5_A          102 PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE  179 (300)
T ss_dssp             TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred             CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE
Confidence            34678999999999888887778899999987 554422 22 12334444  36677666665 678999998 55544


Q ss_pred             ee--eCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEE
Q 021744          224 SL--SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFI  297 (308)
Q Consensus       224 ~~--~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~  297 (308)
                      .+  ..+...+..+++.++  ++++....+.|.+||. ++.   .....+..+...+.. ++.++|.+.++.. ...|+.
T Consensus       180 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~  255 (300)
T 2qc5_A          180 EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE---ISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGR  255 (300)
T ss_dssp             EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC---EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred             EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc---EEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEE
Confidence            33  234457899999988  5555556778999998 331   111122233445666 8999988666553 345555


Q ss_pred             eecCcee
Q 021744          298 GQNNKGV  304 (308)
Q Consensus       298 ~~~~~~~  304 (308)
                      ...+..+
T Consensus       256 ~~~~g~~  262 (300)
T 2qc5_A          256 ITNDNTI  262 (300)
T ss_dssp             ECTTSCE
T ss_pred             ECCCCcE
Confidence            4433333

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.29  E-value=7.4e-10  Score=94.34  Aligned_cols=261  Identities=7%  Similarity=-0.017  Sum_probs=160.7

Q ss_pred             CCCCCceEEecC----CCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eecc----------CCC
Q 021744           23 GGGGGLSTADTR----QKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNN----------FNN   87 (308)
Q Consensus        23 ~~~~~~~~s~s~----d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~----------~d~   87 (308)
                      .++..++++...    ++.|.+.|..+.           ........|... .++++|||+. +.+.          .++
T Consensus        42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~-----------~v~~~I~vG~~P-~va~spDG~~lyVan~~~~r~~~G~~~~  109 (386)
T 3sjl_D           42 PDARRVYVNDPAHFAAVTQQFVIDGEAG-----------RVIGMIDGGFLP-NPVVADDGSFIAHASTVFSRIARGERTD  109 (386)
T ss_dssp             CCTTEEEEEECGGGCSSEEEEEEETTTT-----------EEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred             CCCCEEEEEcCcccCCCCEEEEEECCCC-----------eEEEEEECCCCC-cEEECCCCCEEEEEcccccccccCCCCC
Confidence            455666666654    789999998876           111111112222 3899999998 4443          367


Q ss_pred             cEEEEECCCCCCccccccee------eeeeeeeeeecCCce-EEee--CCCeEEEEEcCCCceeeeEeeCcccceEEEEE
Q 021744           88 HSNNYRAGNSKNSNINNRAV------IKTDILCRNWVQGNC-MYGE--KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITL  158 (308)
Q Consensus        88 ~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~~g~--~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~  158 (308)
                      +|.+||..+.+.........      ......+.++|+|.. +.+.  .++.|.++|+.+. +.+.++.-. + . ...+
T Consensus       110 ~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~-~vv~tI~v~-g-~-~~~~  185 (386)
T 3sjl_D          110 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK-AFKRMLDVP-D-C-YHIF  185 (386)
T ss_dssp             EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT-EEEEEEECC-S-E-EEEE
T ss_pred             EEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC-cEEEEEECC-C-c-ceee
Confidence            89999998887553322111      123667899999976 3333  3689999999999 777777532 1 1 2233


Q ss_pred             eCCCCEEEEeeCCCcEEEEeCCC-CeEEEEEe-C----CCeeE---EEE-cCCCEEEEEcCCcEEEEEcCCCcee---ee
Q 021744          159 PSGSDKLYSGSKDETVRVWDCAS-GQCAGVIN-L----GGEVG---CMI-SEGPWIFIGVTNFVKAWNTQTNTDL---SL  225 (308)
Q Consensus       159 ~~~~~~l~s~s~dg~v~~wd~~~-~~~~~~~~-~----~~~v~---~~~-~~~~~l~~~~d~~i~~wd~~~~~~~---~~  225 (308)
                      ....+.+++.+.||++.+.++.+ ++...... .    ..++.   .+. +++++++++.+++|++.|+.+....   .+
T Consensus       186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~  265 (386)
T 3sjl_D          186 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV  265 (386)
T ss_dssp             EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCE
T ss_pred             cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecce
Confidence            33456778888999999999986 55433221 1    11111   222 5777777888999999999876432   22


Q ss_pred             e--C--------CCCCEEEEEEeCC--EEEEEcC----------CCeEEEEEcCCCCcccccceeccccCCCeEE-EEec
Q 021744          226 S--G--------PVGQVYAMAVGND--LLFAGTQ----------DGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR  282 (308)
Q Consensus       226 ~--~--------~~~~v~~~~~~~~--~l~~g~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~  282 (308)
                      .  .        .......++++++  .++....          .+.|.++|+.+.    +.+..+.... .+.. +|++
T Consensus       266 ~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~----kv~~~i~vg~-~~~~lavs~  340 (386)
T 3sjl_D          266 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG----ERLAKFEMGH-EIDSINVSQ  340 (386)
T ss_dssp             ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC----CEEEEEEEEE-EECEEEECS
T ss_pred             eccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC----eEEEEEECCC-CcceEEECC
Confidence            1  0        1122334777887  3333321          257999999997    6667666433 4545 9999


Q ss_pred             CCC-eEEEee--c--eEEEEeecCcee
Q 021744          283 DVT-SLLGSV--S--FIMFIGQNNKGV  304 (308)
Q Consensus       283 d~~-~l~~s~--s--~~i~~~~~~~~~  304 (308)
                      |++ +|+++.  +  +.++-....+.+
T Consensus       341 D~~~~ly~tn~~~~~VsViD~~t~k~~  367 (386)
T 3sjl_D          341 DEKPLLYALSTGDKTLYIHDAESGEEL  367 (386)
T ss_dssp             SSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence            997 666644  3  444444444433

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.27  E-value=6.4e-09  Score=89.12  Aligned_cols=224  Identities=9%  Similarity=0.020  Sum_probs=136.7

Q ss_pred             CCceEEecCCCeEEEeecCCCCC-CCCCcccccCCCCCCccc--cccceeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNR-FPCPYLHRELPLPPAATA--NGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~~~~~~~~~g--h~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      +..+..++.++.|..+|..+++. +..+.     +.......  ..........++.. +.++.++.|..+|.++++..-
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W  127 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSL-----AEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAW  127 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEEC-----CC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecC-----ccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEE
Confidence            56677788899999999987731 11110     00000000  00111122234445 778889999999998886542


Q ss_pred             cccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccce-----EEEEEeCCCCEEEEeeCCCcEEE
Q 021744          102 INNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVV-----SGITLPSGSDKLYSGSKDETVRV  176 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~l~s~s~dg~v~~  176 (308)
                      ...  ....+.......++..+.++.++.|..+|..++ +.+..+.......     ......  +..++.++.++.+..
T Consensus       128 ~~~--~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG-~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~  202 (376)
T 3q7m_A          128 QTK--VAGEALSRPVVSDGLVLIHTSNGQLQALNEADG-AVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA  202 (376)
T ss_dssp             EEE--CSSCCCSCCEEETTEEEEECTTSEEEEEETTTC-CEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred             EEe--CCCceEcCCEEECCEEEEEcCCCeEEEEECCCC-cEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence            111  111111111223556677888999999999999 6666655332211     122222  457888888999999


Q ss_pred             EeCCCCeEEEEEeCCCee------------EEEEcCCCEEEEE-cCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCCEEE
Q 021744          177 WDCASGQCAGVINLGGEV------------GCMISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLF  243 (308)
Q Consensus       177 wd~~~~~~~~~~~~~~~v------------~~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~  243 (308)
                      +|.++++.+.......+.            ......+..++++ .++.+..+|.++++...... ......+....+.++
T Consensus       203 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~l~  281 (376)
T 3q7m_A          203 VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE-LGSVNDFIVDGNRIY  281 (376)
T ss_dssp             EETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC-CCCEEEEEEETTEEE
T ss_pred             EECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc-CCCCCCceEECCEEE
Confidence            999999998887743221            0011124455544 48999999999998873222 233556666666777


Q ss_pred             EEcCCCeEEEEEcCCCC
Q 021744          244 AGTQDGAILAWKFNVTT  260 (308)
Q Consensus       244 ~g~~dg~i~iwd~~~~~  260 (308)
                      .++.++.|..+|..+++
T Consensus       282 ~~~~~g~l~~~d~~tG~  298 (376)
T 3q7m_A          282 LVDQNDRVMALTIDGGV  298 (376)
T ss_dssp             EEETTCCEEEEETTTCC
T ss_pred             EEcCCCeEEEEECCCCc
Confidence            78889999999998874

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.26  E-value=1.2e-08  Score=85.69  Aligned_cols=207  Identities=11%  Similarity=0.056  Sum_probs=132.8

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEG  148 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~  148 (308)
                      ..+|+|++..  ++...++.|..||.++++...   ......+..+.+.+++..+.+..+ .|.+||..++ +.. .+..
T Consensus        53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---~~~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g-~~~-~~~~  126 (326)
T 2ghs_A           53 GPTFDPASGTAWWFNILERELHELHLASGRKTV---HALPFMGSALAKISDSKQLIASDD-GLFLRDTATG-VLT-LHAE  126 (326)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE---EECSSCEEEEEEEETTEEEEEETT-EEEEEETTTC-CEE-EEEC
T ss_pred             CCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE---EECCCcceEEEEeCCCeEEEEECC-CEEEEECCCC-cEE-EEee
Confidence            5789997554  777778999999997664321   112234777788899988666654 4999999877 332 2221


Q ss_pred             c-----ccceEEEEEeCCCCEEEEeeC------CCcEEEEeCCCCeEEEEEeCCCeeE--EEEcCCCEEEEE-c-CCcEE
Q 021744          149 H-----QKVVSGITLPSGSDKLYSGSK------DETVRVWDCASGQCAGVINLGGEVG--CMISEGPWIFIG-V-TNFVK  213 (308)
Q Consensus       149 h-----~~~v~~~~~~~~~~~l~s~s~------dg~v~~wd~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~-~-d~~i~  213 (308)
                      .     ...+..++++|+++++++...      .+.|..++  +++............  ++.++++.++.+ . ++.|.
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~  204 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLM  204 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEE
Confidence            1     246889999999987765542      24566666  455433322211222  345788876644 4 67999


Q ss_pred             EEEcC--CC-ce-----e-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEe
Q 021744          214 AWNTQ--TN-TD-----L-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFS  281 (308)
Q Consensus       214 ~wd~~--~~-~~-----~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s  281 (308)
                      +||+.  ++ +.     . .+......+..+++.++  ++++...++.|..||.. +    +.+..+..+...+.+ +|+
T Consensus       205 ~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g----~~~~~i~~~~~~~~~~af~  279 (326)
T 2ghs_A          205 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G----NHIARYEVPGKQTTCPAFI  279 (326)
T ss_dssp             EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C----CEEEEEECSCSBEEEEEEE
T ss_pred             EEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-C----CEEEEEECCCCCcEEEEEe
Confidence            99986  55 32     1 22223456788999888  44555456889999984 3    445566656666777 998


Q ss_pred             -cCCCeEEEe
Q 021744          282 -RDVTSLLGS  290 (308)
Q Consensus       282 -~d~~~l~~s  290 (308)
                       ++++.|+++
T Consensus       280 g~d~~~L~vt  289 (326)
T 2ghs_A          280 GPDASRLLVT  289 (326)
T ss_dssp             STTSCEEEEE
T ss_pred             cCCCCEEEEE
Confidence             888766543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.24  E-value=6.2e-12  Score=107.84  Aligned_cols=192  Identities=10%  Similarity=-0.029  Sum_probs=99.2

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCcccc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      .+..+++++.|+.|+.||..+++.     +.. ..... .     .+..+.+++.. ++++.|+.|+.||.++++.....
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~-----~W~-~~~~~-~-----~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~   75 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSI-----KWT-LKEDP-V-----LQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL   75 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCE-----EEE-EECCC-S-----CCCC-----CCEEECTTTCCEEEC-----CCSEEC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCE-----EEE-ecCCC-c-----eecceEcCCCEEEEeCCCCEEEEEECCCCceeeee
Confidence            367788999999999999988721     111 00000 0     02234456666 77889999999999888654222


Q ss_pred             cceeeeeeee-eeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744          104 NRAVIKTDIL-CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (308)
Q Consensus       104 ~~~~~~~~~~-~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~  182 (308)
                      .......+.. ..+..++..++++.++.|+.||..++ +.+..+..+.    ...++|++..+++++.|+.|+.||.+++
T Consensus        76 ~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG-~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG  150 (369)
T 2hz6_A           76 PFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTG-EKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTR  150 (369)
T ss_dssp             SCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSS
T ss_pred             eccCccccccCceEecCCEEEEEeCCCEEEEEECCCC-cEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCC
Confidence            1111111111 11123445577888999999999999 6666666543    2345567888999999999999999999


Q ss_pred             eEEEEEeCCCeeE-EEEcC----CCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEE
Q 021744          183 QCAGVINLGGEVG-CMISE----GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVY  233 (308)
Q Consensus       183 ~~~~~~~~~~~v~-~~~~~----~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~  233 (308)
                      +.+..+....... .+..+    +.+++.+.++.+..||.++++.+.......++.
T Consensus       151 ~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~  206 (369)
T 2hz6_A          151 ELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVV  206 (369)
T ss_dssp             SCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEE
T ss_pred             CEEEeEecccccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceE
Confidence            8877765221111 11111    445555559999999999998873222344443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.23  E-value=3.2e-09  Score=98.55  Aligned_cols=219  Identities=9%  Similarity=-0.029  Sum_probs=133.9

Q ss_pred             eeEEecCCCe-e-----eccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCC-------------e
Q 021744           71 AKRFANNTWG-R-----NNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCK-------------F  130 (308)
Q Consensus        71 ~i~~s~~g~~-~-----s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~-------------~  130 (308)
                      .++|||||++ |     .|+...+|++||+++++....  .........+.|+ ++.. +++..+.             .
T Consensus       133 ~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~  209 (693)
T 3iuj_A          133 QLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHK  209 (693)
T ss_dssp             EEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCE
T ss_pred             EEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcE
Confidence            6799999998 5     344446899999998875422  1111113567788 8854 5665553             4


Q ss_pred             EEEEEcCCCce---eeeEeeC-cccceEEEEEeCCCCEEEEee----CCCcEEEEeCCCCe-EEEEEe-CCCee-EEEEc
Q 021744          131 LHSWTVGDGFK---LLTQLEG-HQKVVSGITLPSGSDKLYSGS----KDETVRVWDCASGQ-CAGVIN-LGGEV-GCMIS  199 (308)
Q Consensus       131 i~iwd~~~~~~---~~~~~~~-h~~~v~~~~~~~~~~~l~s~s----~dg~v~~wd~~~~~-~~~~~~-~~~~v-~~~~~  199 (308)
                      |++|++.+...   .+..... |...+..+.|+||+++|+...    ....|+++|+.++. ....+. ..... ..+.+
T Consensus       210 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~  289 (693)
T 3iuj_A          210 VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDN  289 (693)
T ss_dssp             EEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEE
T ss_pred             EEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEec
Confidence            99999987631   2333333 445678899999999875433    23589999998763 233333 33322 33556


Q ss_pred             CCCEEE-EEc-C---CcEEEEEcCCCce---eeeeCCCCCEEEEEEeCC---EEEEEcCCC--eEEEEEcCCCCcccccc
Q 021744          200 EGPWIF-IGV-T---NFVKAWNTQTNTD---LSLSGPVGQVYAMAVGND---LLFAGTQDG--AILAWKFNVTTNCFEPA  266 (308)
Q Consensus       200 ~~~~l~-~~~-d---~~i~~wd~~~~~~---~~~~~~~~~v~~~~~~~~---~l~~g~~dg--~i~iwd~~~~~~~~~~~  266 (308)
                      ++..|+ .+. +   ..|..+|+.+++.   ..+..+...+.  .|+++   ++++...++  .|++|++..+     ..
T Consensus       290 ~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-----~~  362 (693)
T 3iuj_A          290 KGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-----RV  362 (693)
T ss_dssp             ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-----EE
T ss_pred             cCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-----ee
Confidence            666555 443 2   5799999988765   45555555554  55554   444455555  6888888753     22


Q ss_pred             eecc-ccCCCeEE-EEecCCCeEEEee-c----eEEEEee
Q 021744          267 ASLK-VHTDSNRA-HFSRDVTSLLGSV-S----FIMFIGQ  299 (308)
Q Consensus       267 ~~~~-~~~~~v~~-~~s~d~~~l~~s~-s----~~i~~~~  299 (308)
                      ..+. .....+.. .+++++..++.+. +    ..+|...
T Consensus       363 ~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d  402 (693)
T 3iuj_A          363 REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE  402 (693)
T ss_dssp             EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred             EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence            3333 23344556 7788887766333 2    5666655

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.23  E-value=5e-10  Score=95.68  Aligned_cols=163  Identities=7%  Similarity=-0.046  Sum_probs=115.3

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCC---------CcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCc
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSK---------NSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGF  140 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~  140 (308)
                      .+++++.... ++|+.++ +++|+++..+         ........+.. +..+.|  ++..+..+.++.|++||+.+. 
T Consensus        42 lLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~sl-  116 (388)
T 1xip_A           42 NLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNALYSLDLEEL-  116 (388)
T ss_dssp             CEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSEEEEEESSST-
T ss_pred             EEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCcEEEEEchhh-
Confidence            6999999999 8888875 7779874332         11001222334 778888  666633338899999999877 


Q ss_pred             eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE--EcCCCEEEEEcCCcEEEEEcC
Q 021744          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGVTNFVKAWNTQ  218 (308)
Q Consensus       141 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~d~~i~~wd~~  218 (308)
                      ........|+..+.++.+.+.  .+++++.||.|.+||+.+++...   ....++|+  +++| ..+...||++++|+..
T Consensus       117 ~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~  190 (388)
T 1xip_A          117 SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWR  190 (388)
T ss_dssp             TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE-EEEEETTSCEEEEEEE
T ss_pred             hccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc-eEEEEcCCcEEEEcCC
Confidence            344556667788888877654  39999999999999999887654   23356665  4556 4444459999999998


Q ss_pred             CCce--e-ee------e---CCCCCEEEEEEeCC--EEEE
Q 021744          219 TNTD--L-SL------S---GPVGQVYAMAVGND--LLFA  244 (308)
Q Consensus       219 ~~~~--~-~~------~---~~~~~v~~~~~~~~--~l~~  244 (308)
                      ..+.  + ++      .   +|...|.++.|.++  ++++
T Consensus       191 ~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          191 NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             CccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            8874  3 44      2   36788999999988  4444

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.22  E-value=3e-12  Score=109.82  Aligned_cols=197  Identities=11%  Similarity=0.013  Sum_probs=104.7

Q ss_pred             CCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccc-e
Q 021744           77 NTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKV-V  153 (308)
Q Consensus        77 ~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~-v  153 (308)
                      ++.. ++++.|+.|+.||..+++..-....   ..+....+..++.. +.++.|+.|+.||..++ +.+..+..+... +
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG-~~~w~~~~~~~~~~   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNN-EGLTKLPFTIPELV   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSCCHHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCC-ceeeeeeccCcccc
Confidence            4556 8899999999999998876532221   23334444555644 66689999999999888 555555433221 1


Q ss_pred             E-EEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCC
Q 021744          154 S-GITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVG  230 (308)
Q Consensus       154 ~-~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~  230 (308)
                      . ...+. .+..+++++.|+.++.||.++|+.+..+..... ...++++..++++. ++.|+.||.++++.. .+..+. 
T Consensus        84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~-~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-  160 (369)
T 2hz6_A           84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA-DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-  160 (369)
T ss_dssp             TTCSCC------CCCCEEEEEEEEECCC-----------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-
T ss_pred             ccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc-ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-
Confidence            1 11111 345688889999999999999999888774432 22345666777665 899999999999876 332111 


Q ss_pred             CEEEEEEeC-----CEEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCC
Q 021744          231 QVYAMAVGN-----DLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVT  285 (308)
Q Consensus       231 ~v~~~~~~~-----~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~  285 (308)
                       ....++.+     +.+++++.||.|+.||..++    +.+.........+.. .++++|.
T Consensus       161 -~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG----~~~W~~~~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          161 -YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG----DVLWIQNYASPVVAFYVWQREGL  216 (369)
T ss_dssp             -ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC----CEEEEEECSSCEEEEEECTTSSC
T ss_pred             -ccCccccCCccccceEEEECCCCEEEEEECCCC----cEEEEecCCCceEEEEEecCCce
Confidence             12233444     35677889999999999987    444444432323334 6666664

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.20  E-value=6.3e-09  Score=86.56  Aligned_cols=221  Identities=9%  Similarity=0.089  Sum_probs=136.9

Q ss_pred             CCceEE-------ecCCCeEEEeecCCCCCCCCCcccccCCCCCCcccccc-c-eeEEecC-CCe-eeccCCCcEEEEEC
Q 021744           26 GGLSTA-------DTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGA-A-AKRFANN-TWG-RNNNFNNHSNNYRA   94 (308)
Q Consensus        26 ~~~~~s-------~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~-~-~i~~s~~-g~~-~s~~~d~~i~vwd~   94 (308)
                      +.++++       ++.++.|.+|+..++...  .+.   .+   ...++.. . .++++++ |.. ++.. +..|.+||.
T Consensus        29 g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~---~~---~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~   99 (314)
T 1pjx_A           29 GDFYIVAPEVEVNGKPAGEILRIDLKTGKKT--VIC---KP---EVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQT   99 (314)
T ss_dssp             SCEEEEETTCEETTEECCEEEEECTTTCCEE--EEE---CC---EETTEECCEEEEEECSSSSEEEEEET-TTEEEEEET
T ss_pred             CCEEEEEeccccCCCCCCEEEEEeCCCCcEE--EEE---ec---ccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEeC
Confidence            456666       677899999997665210  000   00   0011212 2 7899999 776 5444 447899998


Q ss_pred             CCCCCccc-cc---ceeeeeeeeeeeecCCceE-EeeCC---------------CeEEEEEcCCCceeeeEeeCcccceE
Q 021744           95 GNSKNSNI-NN---RAVIKTDILCRNWVQGNCM-YGEKC---------------KFLHSWTVGDGFKLLTQLEGHQKVVS  154 (308)
Q Consensus        95 ~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~-~g~~d---------------~~i~iwd~~~~~~~~~~~~~h~~~v~  154 (308)
                      + ++.... ..   ......+..+.+.+++... +...+               +.|..++.. + +.. .+..+.....
T Consensus       100 ~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~-~~~~~~~~~~  175 (314)
T 1pjx_A          100 D-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G-QMI-QVDTAFQFPN  175 (314)
T ss_dssp             T-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S-CEE-EEEEEESSEE
T ss_pred             C-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C-CEE-EeccCCCCcc
Confidence            7 543211 10   1111236778888888774 43333               567777765 4 332 2333445668


Q ss_pred             EEEEe----CCCCEE-EEeeCCCcEEEEeCC-CCeEE--EEE---eCC--CeeEEE--EcCCCEEEEEc-CCcEEEEEcC
Q 021744          155 GITLP----SGSDKL-YSGSKDETVRVWDCA-SGQCA--GVI---NLG--GEVGCM--ISEGPWIFIGV-TNFVKAWNTQ  218 (308)
Q Consensus       155 ~~~~~----~~~~~l-~s~s~dg~v~~wd~~-~~~~~--~~~---~~~--~~v~~~--~~~~~~l~~~~-d~~i~~wd~~  218 (308)
                      .++++    |+++.+ ++...++.|.+||+. +++..  ..+   ...  .....+  .++++++++.. ++.|.+||..
T Consensus       176 ~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~  255 (314)
T 1pjx_A          176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             eEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence            89999    998665 454568899999986 45421  112   111  333333  46787777654 7899999998


Q ss_pred             CCcee-eeeCCCCCEEEEEEeCC--EE-EEEcCCCeEEEEEcCCC
Q 021744          219 TNTDL-SLSGPVGQVYAMAVGND--LL-FAGTQDGAILAWKFNVT  259 (308)
Q Consensus       219 ~~~~~-~~~~~~~~v~~~~~~~~--~l-~~g~~dg~i~iwd~~~~  259 (308)
                      +++.. .+..+...+.+++++|+  .| ++...++.|..|++...
T Consensus       256 ~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          256 GGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             CBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            66654 55556678999999988  34 45556789999998753

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.19  E-value=2.1e-08  Score=87.05  Aligned_cols=209  Identities=7%  Similarity=-0.016  Sum_probs=133.8

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCC--eEEEEEcCCCceeeeEe
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCK--FLHSWTVGDGFKLLTQL  146 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~--~i~iwd~~~~~~~~~~~  146 (308)
                      .++++|++.+ ++...++.|++||.++++.....  ....... +.+.+++.. +.+..++  .|.+++..++. ....+
T Consensus       135 ~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~--~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~-~~~~~  210 (409)
T 3hrp_A          135 GIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH--PGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW-APTRI  210 (409)
T ss_dssp             EEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE--ETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT-CEEEE
T ss_pred             EEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee--ccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc-eeEEe
Confidence            7899999998 88888899999999766443211  1112233 788888875 4444444  89999987663 22333


Q ss_pred             ----eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEE---e--C-C-Ce--eEEEEcCCCEEE-EEc-CCc
Q 021744          147 ----EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI---N--L-G-GE--VGCMISEGPWIF-IGV-TNF  211 (308)
Q Consensus       147 ----~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~---~--~-~-~~--v~~~~~~~~~l~-~~~-d~~  211 (308)
                          ......+.+++++|++..|+.+..++.|+.||..++.....-   .  . . .+  -.++.+++..|+ +.. ++.
T Consensus       211 g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~  290 (409)
T 3hrp_A          211 GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSS  290 (409)
T ss_dssp             EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTE
T ss_pred             eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCE
Confidence                214466789999996555666777889999999877633221   1  1 1 11  233456445544 444 779


Q ss_pred             EEEEEcCCCceeeeeCCC---------------CCEEEEEEeCC--EEEEEc-CCCeEEEEEcCCCCcccccceecccc-
Q 021744          212 VKAWNTQTNTDLSLSGPV---------------GQVYAMAVGND--LLFAGT-QDGAILAWKFNVTTNCFEPAASLKVH-  272 (308)
Q Consensus       212 i~~wd~~~~~~~~~~~~~---------------~~v~~~~~~~~--~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~-  272 (308)
                      |+.||.... ...+.++.               .....++++|+  ++++-+ .++.|+.|++.++    . +.++.++ 
T Consensus       291 I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G----~-v~~~~g~~  364 (409)
T 3hrp_A          291 VYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG----Y-VSTVAGQV  364 (409)
T ss_dssp             EEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT----E-EEEEEECT
T ss_pred             EEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC----E-EEEEeCCC
Confidence            999987654 33333322               35889999998  667777 7899999997765    2 2333222 


Q ss_pred             --------------CCCeEE-EEecCCCeEEE
Q 021744          273 --------------TDSNRA-HFSRDVTSLLG  289 (308)
Q Consensus       273 --------------~~~v~~-~~s~d~~~l~~  289 (308)
                                    -..... +++++|.++++
T Consensus       365 ~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa  396 (409)
T 3hrp_A          365 DVASQIDGTPLEATFNYPYDICYDGEGGYWIA  396 (409)
T ss_dssp             TCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE
T ss_pred             CCCCcCCCChhceEeCCceEEEEcCCCCEEEE
Confidence                          123555 88888765554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.19  E-value=8.2e-09  Score=95.51  Aligned_cols=252  Identities=14%  Similarity=0.056  Sum_probs=147.8

Q ss_pred             CCceEEecCCCeEEEeecCCCCC-CCCCcccccCCCCCCccccccceeEEecCCCeeecc------CCCcEEEEECCCCC
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNR-FPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNN------FNNHSNNYRAGNSK   98 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~~s~~------~d~~i~vwd~~~~~   98 (308)
                      +..++.++.|+.|..+|+.+++. +.....    ............ ..+ .++..+.+.      .++.|+.||.++++
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~----~~~~~~~~~~~s-P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~  194 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTR----ADHKRSYTITGA-PRV-VNGKVVIGNGGAEFGVRGYVTAYDAETGK  194 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECC----SCTTSCCBCCSC-CEE-ETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCc----CCCCCCccccCC-cEE-ECCEEEEEeCCCccCCCCEEEEEECCCCc
Confidence            56788888999999999988832 111000    000000001111 111 144443222      37899999999887


Q ss_pred             Ccccccce-----------------------------eeee-eeeeeeecCCce-EEeeCCC------------------
Q 021744           99 NSNINNRA-----------------------------VIKT-DILCRNWVQGNC-MYGEKCK------------------  129 (308)
Q Consensus        99 ~~~~~~~~-----------------------------~~~~-~~~~~~~~~~~~-~~g~~d~------------------  129 (308)
                      .+-.....                             .... -....+.++... +.+..++                  
T Consensus       195 ~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~  274 (689)
T 1yiq_A          195 EAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFL  274 (689)
T ss_dssp             EEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTT
T ss_pred             EEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceee
Confidence            54221100                             0000 123456665544 5555554                  


Q ss_pred             -eEEEEEcCCCceeeeEeeC--cc-------cceEEEEEeCCCC---EEEEeeCCCcEEEEeCCCCeEEEEEeCCCe---
Q 021744          130 -FLHSWTVGDGFKLLTQLEG--HQ-------KVVSGITLPSGSD---KLYSGSKDETVRVWDCASGQCAGVINLGGE---  193 (308)
Q Consensus       130 -~i~iwd~~~~~~~~~~~~~--h~-------~~v~~~~~~~~~~---~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~---  193 (308)
                       .|..+|..++ +.+..++.  |.       ..+.......+++   .++.++.+|.++++|.++|+.+........   
T Consensus       275 ~~v~AlD~~TG-~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~  353 (689)
T 1yiq_A          275 SSIVAVNADTG-EYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWT  353 (689)
T ss_dssp             TEEEEEETTTC-CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred             eeEEEEEccCC-ceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccc
Confidence             4999999999 67766653  21       1222223333554   788999999999999999999865442110   


Q ss_pred             ---------------------------------------eEEEEcCCCEEEEEc--------------------------
Q 021744          194 ---------------------------------------VGCMISEGPWIFIGV--------------------------  208 (308)
Q Consensus       194 ---------------------------------------v~~~~~~~~~l~~~~--------------------------  208 (308)
                                                             -.++.++..++++..                          
T Consensus       354 ~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g  433 (689)
T 1yiq_A          354 KGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG  433 (689)
T ss_dssp             EEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred             cccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccC
Confidence                                                   012344555655431                          


Q ss_pred             --------------------CCcEEEEEcCCCcee-eeeCCCCCEEEEEEe-CC-EEEEEcCCCeEEEEEcCCCCccccc
Q 021744          209 --------------------TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVG-ND-LLFAGTQDGAILAWKFNVTTNCFEP  265 (308)
Q Consensus       209 --------------------d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~-~~-~l~~g~~dg~i~iwd~~~~~~~~~~  265 (308)
                                          ++.|..||+.+++.+ .+..+. +...-.+. .. +++.++.||.++.||.+++    +.
T Consensus       434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG----~~  508 (689)
T 1yiq_A          434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTG----EK  508 (689)
T ss_dssp             SEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTC----CE
T ss_pred             ccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCC----cc
Confidence                                267999999999988 444333 22222232 33 8888999999999999998    66


Q ss_pred             ceeccccCCCeEE--EEecCCCeEEE
Q 021744          266 AASLKVHTDSNRA--HFSRDVTSLLG  289 (308)
Q Consensus       266 ~~~~~~~~~~v~~--~~s~d~~~l~~  289 (308)
                      +.++.........  .|..+|+..++
T Consensus       509 lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          509 LWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             EEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             ceeeeCCCCcccCceEEEECCEEEEE
Confidence            6666644333322  67888876553

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.16  E-value=3.1e-09  Score=99.41  Aligned_cols=222  Identities=13%  Similarity=0.061  Sum_probs=131.7

Q ss_pred             CCceEEecCC-----CeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCc-----------
Q 021744           26 GGLSTADTRQ-----KVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNH-----------   88 (308)
Q Consensus        26 ~~~~~s~s~d-----~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~-----------   88 (308)
                      |.+||.++.+     .+|++||+.+++           .......+.....++|+|| +. +.++.|+.           
T Consensus       174 G~~la~~~~~~G~e~~~i~v~dl~tg~-----------~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~  241 (741)
T 1yr2_A          174 GRLLAYSVQDGGSDWRTVKFVGVADGK-----------PLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY  241 (741)
T ss_dssp             SSEEEEEEEETTCSEEEEEEEETTTCC-----------EEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred             CCEEEEEEcCCCCceEEEEEEECCCCC-----------CCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence            5566665443     479999998872           1111000000015799999 77 66665544           


Q ss_pred             ---EEEEECCCCCCccccc---ceeeeeeeeeeeecCCce-EEeeC-----CCeEEEEEcCCCcee-eeEeeCcccceEE
Q 021744           89 ---SNNYRAGNSKNSNINN---RAVIKTDILCRNWVQGNC-MYGEK-----CKFLHSWTVGDGFKL-LTQLEGHQKVVSG  155 (308)
Q Consensus        89 ---i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~g~~-----d~~i~iwd~~~~~~~-~~~~~~h~~~v~~  155 (308)
                         |++|++.+++......   ..+...+....++++|.. +..+.     ...|++||+.++... ...+..+...+..
T Consensus       242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~  321 (741)
T 1yr2_A          242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD  321 (741)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE
T ss_pred             CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEE
Confidence               8899997765311111   111123567789999965 44443     348999999876223 4556656655555


Q ss_pred             EEEeCCCCEEEEeeCC----CcEEEEeCCCC--eEEEEEeC-CCeeEEEE-cCCCEEEEEc-CCcEEEE--EcCCCceee
Q 021744          156 ITLPSGSDKLYSGSKD----ETVRVWDCASG--QCAGVINL-GGEVGCMI-SEGPWIFIGV-TNFVKAW--NTQTNTDLS  224 (308)
Q Consensus       156 ~~~~~~~~~l~s~s~d----g~v~~wd~~~~--~~~~~~~~-~~~v~~~~-~~~~~l~~~~-d~~i~~w--d~~~~~~~~  224 (308)
                      .. +|+++.|+..+.+    +.|.+||+.++  +....+.+ ...+..+. .++.++++.. ++..++|  |+..+....
T Consensus       322 ~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~  400 (741)
T 1yr2_A          322 FV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGA  400 (741)
T ss_dssp             EE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEE
T ss_pred             EE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceee
Confidence            53 4888888777764    45999999874  33333443 33444443 3444555554 7765555  554443334


Q ss_pred             eeC-CCCCEEEEEEeCC---EEEE---EcCCCeEEEEEcCCCC
Q 021744          225 LSG-PVGQVYAMAVGND---LLFA---GTQDGAILAWKFNVTT  260 (308)
Q Consensus       225 ~~~-~~~~v~~~~~~~~---~l~~---g~~dg~i~iwd~~~~~  260 (308)
                      +.. ....+..+.++|+   ++++   ....+.|++||+.+++
T Consensus       401 l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          401 VSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             CBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             ccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            443 3567888999887   3332   2345789999998763

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.14  E-value=3e-08  Score=91.59  Aligned_cols=252  Identities=12%  Similarity=0.005  Sum_probs=149.6

Q ss_pred             CCceEEecCCCeEEEeecCCCCC-CCCCcccccCCCCCCccccccc-eeEEecCCCeeecc------CCCcEEEEECCCC
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNR-FPCPYLHRELPLPPAATANGAA-AKRFANNTWGRNNN------FNNHSNNYRAGNS   97 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~~s~~------~d~~i~vwd~~~~   97 (308)
                      +..|+.++.|+.|..+|+.+++. +.....     . ....+.... ...+ .++..+.++      .++.|+.+|.+++
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~-----~-~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG  200 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTF-----E-GQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETG  200 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETT-----T-TCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCC-----c-CcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCC
Confidence            56788888999999999988832 111100     0 000001101 1112 133333333      2789999999888


Q ss_pred             CCccccccee-----------------------------ee--eeeeeeeecCCce-EEeeCCC----------------
Q 021744           98 KNSNINNRAV-----------------------------IK--TDILCRNWVQGNC-MYGEKCK----------------  129 (308)
Q Consensus        98 ~~~~~~~~~~-----------------------------~~--~~~~~~~~~~~~~-~~g~~d~----------------  129 (308)
                      +.+-......                             ..  ......+.+++.. +.+..++                
T Consensus       201 ~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~  280 (677)
T 1kb0_A          201 ERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNL  280 (677)
T ss_dssp             CEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred             cEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCe
Confidence            7542211100                             00  0123455665544 4444332                


Q ss_pred             ---eEEEEEcCCCceeeeEeeC--cc-------cceEEEEEeCCC---CEEEEeeCCCcEEEEeCCCCeEEEEEeCCC--
Q 021744          130 ---FLHSWTVGDGFKLLTQLEG--HQ-------KVVSGITLPSGS---DKLYSGSKDETVRVWDCASGQCAGVINLGG--  192 (308)
Q Consensus       130 ---~i~iwd~~~~~~~~~~~~~--h~-------~~v~~~~~~~~~---~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~--  192 (308)
                         .|..+|..++ +.+..++.  |.       .....+....++   ..++.++.+|.++++|.++++.+..+....  
T Consensus       281 ~~~sv~AlD~~TG-~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~  359 (677)
T 1kb0_A          281 YLASIVALDPDTG-KYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVN  359 (677)
T ss_dssp             TTTEEEEECTTTC-CEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred             eeEEEEEEECCCC-CEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccC
Confidence               5999999999 66666553  21       122233334466   678999999999999999999988776221  


Q ss_pred             ----------e--------------------------eEEEEcCCCEEEEEc----------------------------
Q 021744          193 ----------E--------------------------VGCMISEGPWIFIGV----------------------------  208 (308)
Q Consensus       193 ----------~--------------------------v~~~~~~~~~l~~~~----------------------------  208 (308)
                                +                          ..++.++..++++..                            
T Consensus       360 ~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  439 (677)
T 1kb0_A          360 WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTG  439 (677)
T ss_dssp             SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGT
T ss_pred             cccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccc
Confidence                      0                          113345666766532                            


Q ss_pred             ----------------CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecc
Q 021744          209 ----------------TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK  270 (308)
Q Consensus       209 ----------------d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~  270 (308)
                                      .+.|..||+.+++.+....+..++....+..+  +++.++.||.+++||..++    +.+.++.
T Consensus       440 ~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG----~~lw~~~  515 (677)
T 1kb0_A          440 WNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG----EKLWEAP  515 (677)
T ss_dssp             CCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC----CEEEEEE
T ss_pred             cccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCC----ceeeeee
Confidence                            16799999999998832223333333334433  7888899999999999998    6677666


Q ss_pred             ccCCCeEE--EEecCCCeEEE
Q 021744          271 VHTDSNRA--HFSRDVTSLLG  289 (308)
Q Consensus       271 ~~~~~v~~--~~s~d~~~l~~  289 (308)
                      ........  .|..+|+.+++
T Consensus       516 ~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          516 TGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             CSSCCCSCCEEEEETTEEEEE
T ss_pred             CCCCcccCCEEEEeCCEEEEE
Confidence            44332222  67788876653

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.11  E-value=3.3e-08  Score=85.82  Aligned_cols=217  Identities=8%  Similarity=-0.009  Sum_probs=135.2

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCC--cEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNN--HSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~--~i~vwd~~~~~~~~~  102 (308)
                      +.++++...++.|++||...+..   ..+..   .     +... .++++|++.. +.+..++  .|.+++...+.....
T Consensus       142 g~lyv~d~~~~~I~~id~~~g~~---~~~~~---~-----~~~~-~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~  209 (409)
T 3hrp_A          142 NTVLAYQRDDPRVRLISVDDNKV---TTVHP---G-----FKGG-KPAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR  209 (409)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEE---EEEEE---T-----CCBC-BCEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred             CCEEEEecCCCcEEEEECCCCEE---EEeec---c-----CCCC-ceeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence            44677777778899998876510   00000   0     1111 3799999998 6666655  788888754432111


Q ss_pred             c--cce-eeeeeeeeeeec-CCceEEeeCCCeEEEEEcCCCceeeeE----eeCcccce-E-EEEEeCC-CCEEEEeeCC
Q 021744          103 N--NRA-VIKTDILCRNWV-QGNCMYGEKCKFLHSWTVGDGFKLLTQ----LEGHQKVV-S-GITLPSG-SDKLYSGSKD  171 (308)
Q Consensus       103 ~--~~~-~~~~~~~~~~~~-~~~~~~g~~d~~i~iwd~~~~~~~~~~----~~~h~~~v-~-~~~~~~~-~~~l~s~s~d  171 (308)
                      .  ... ....+..+++.+ ++.++....++.|+.||..++. ....    ..++...- . .++|+|+ +.++++-..+
T Consensus       210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~-~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~  288 (409)
T 3hrp_A          210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE-VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL  288 (409)
T ss_dssp             EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC-EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred             eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC-EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence            1  001 223367788888 5666556678899999998763 2111    12222222 3 9999995 5566666778


Q ss_pred             CcEEEEeCCCCeEEEEEeCC---------------CeeE--EEEcCCCEEEEEc--CCcEEEEEcCCCceeeeeCC----
Q 021744          172 ETVRVWDCASGQCAGVINLG---------------GEVG--CMISEGPWIFIGV--TNFVKAWNTQTNTDLSLSGP----  228 (308)
Q Consensus       172 g~v~~wd~~~~~~~~~~~~~---------------~~v~--~~~~~~~~l~~~~--d~~i~~wd~~~~~~~~~~~~----  228 (308)
                      +.|+.|+.... ........               ....  ++.++++++++-.  ++.|+.||+.+++...+.++    
T Consensus       289 ~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~  367 (409)
T 3hrp_A          289 SSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVA  367 (409)
T ss_dssp             TEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCB
T ss_pred             CEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCC
Confidence            89999997643 22222121               1122  2346788666644  66999999888876655544    


Q ss_pred             -----------CCCEEEEEEeCC--EEEEEcCCCeEEEEEc
Q 021744          229 -----------VGQVYAMAVGND--LLFAGTQDGAILAWKF  256 (308)
Q Consensus       229 -----------~~~v~~~~~~~~--~l~~g~~dg~i~iwd~  256 (308)
                                 -.....++++++  ++++-..+++|+.+++
T Consensus       368 g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          368 SQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             SCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence                       246889999997  6667777888888775

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.10  E-value=5.1e-08  Score=80.77  Aligned_cols=199  Identities=12%  Similarity=0.052  Sum_probs=125.6

Q ss_pred             CCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           24 GGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        24 ~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      +.+.++++...++.|..|+..++..     ..  ...      .... +++++|+|++ ++.  +..|.+||.++++...
T Consensus        23 ~~~~l~~~d~~~~~i~~~d~~~~~~-----~~--~~~------~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~   87 (297)
T 3g4e_A           23 VSNSLLFVDIPAKKVCRWDSFTKQV-----QR--VTM------DAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVV   87 (297)
T ss_dssp             TTTEEEEEETTTTEEEEEETTTCCE-----EE--EEC------SSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEE
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcE-----EE--EeC------CCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEE
Confidence            3467888888899999999876511     00  000      0112 6899999998 443  5679999997764321


Q ss_pred             ccc---ceeeeeeeeeeeecCCceEEee------------CCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEE-
Q 021744          102 INN---RAVIKTDILCRNWVQGNCMYGE------------KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKL-  165 (308)
Q Consensus       102 ~~~---~~~~~~~~~~~~~~~~~~~~g~------------~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-  165 (308)
                      ...   ......+..+.+.++|.+..+.            ..+.|..++.. + +. ..+..+......++|+|+++.| 
T Consensus        88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g-~~-~~~~~~~~~pngi~~spdg~~ly  164 (297)
T 3g4e_A           88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-H-HV-KKYFDQVDISNGLDWSLDHKIFY  164 (297)
T ss_dssp             EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-S-CE-EEEEEEESBEEEEEECTTSCEEE
T ss_pred             EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-C-CE-EEEeeccccccceEEcCCCCEEE
Confidence            111   0112236678888999874443            12344444443 2 22 2233344567899999999866 


Q ss_pred             EEeeCCCcEEEEeC--CCCeEE--EEEe----CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEE
Q 021744          166 YSGSKDETVRVWDC--ASGQCA--GVIN----LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVY  233 (308)
Q Consensus       166 ~s~s~dg~v~~wd~--~~~~~~--~~~~----~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~  233 (308)
                      ++.+.++.|.+|++  .++...  ..+.    .......+  .+++++.++.. .+.|..||..+++.+ .+..+...++
T Consensus       165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t  244 (297)
T 3g4e_A          165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTT  244 (297)
T ss_dssp             EEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEE
T ss_pred             EecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCce
Confidence            55666889999987  455432  2222    12233333  46787777665 678999999988876 6666667899


Q ss_pred             EEEEe-CC
Q 021744          234 AMAVG-ND  240 (308)
Q Consensus       234 ~~~~~-~~  240 (308)
                      +++|. |+
T Consensus       245 ~~~f~g~d  252 (297)
T 3g4e_A          245 SCCFGGKN  252 (297)
T ss_dssp             EEEEESGG
T ss_pred             EEEEeCCC
Confidence            99998 66

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.09  E-value=1e-08  Score=88.79  Aligned_cols=256  Identities=7%  Similarity=-0.049  Sum_probs=154.8

Q ss_pred             CCCCCceEEecCC----CeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eecc----------CCC
Q 021744           23 GGGGGLSTADTRQ----KVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNN----------FNN   87 (308)
Q Consensus        23 ~~~~~~~~s~s~d----~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~----------~d~   87 (308)
                      .++...+++...+    ++|.+.|..+..     .+ .+.+     .|... .++++|||+. +.+.          .++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~-----vv-~~I~-----vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~  149 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGR-----IL-GMTD-----GGFLP-HPVAAEDGSFFAQASTVFERIARGKRTD  149 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTE-----EE-EEEE-----ECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCE-----EE-EEEE-----CCCCC-ceEECCCCCEEEEEeccccccccCCCCC
Confidence            4555667776655    799999988761     11 1111     12222 4899999998 4443          467


Q ss_pred             cEEEEECCCCCCcccccce------eeeeeeeeeeecCCceEE-ee--CCCeEEEEEcCCCceeeeEeeCcccceEEEEE
Q 021744           88 HSNNYRAGNSKNSNINNRA------VIKTDILCRNWVQGNCMY-GE--KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITL  158 (308)
Q Consensus        88 ~i~vwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-g~--~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~  158 (308)
                      .|.++|..+.+........      .......+.+++++..+. +.  .++.|.+.|+.+. +.+.++.--.    +...
T Consensus       150 ~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~-kvv~~I~v~g----~~~~  224 (426)
T 3c75_H          150 YVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK-TFDRMLDVPD----CYHI  224 (426)
T ss_dssp             EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT-EEEEEEECCS----EEEE
T ss_pred             EEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC-eEEEEEEcCC----ceee
Confidence            8999999887655332211      012356788999997733 33  2688999999998 6777776321    1233


Q ss_pred             eCCC-CEEEEeeCCCcEEEEeCCCCeEEEEE----eC-CCee---EEEEcCCCEEE-EEcCCcEEEEEcCCCceee---e
Q 021744          159 PSGS-DKLYSGSKDETVRVWDCASGQCAGVI----NL-GGEV---GCMISEGPWIF-IGVTNFVKAWNTQTNTDLS---L  225 (308)
Q Consensus       159 ~~~~-~~l~s~s~dg~v~~wd~~~~~~~~~~----~~-~~~v---~~~~~~~~~l~-~~~d~~i~~wd~~~~~~~~---~  225 (308)
                      .|++ ..+++.+.||++.+.+..+++.....    .. ..++   ..+.+++..++ +...+.+.+.|+.......   +
T Consensus       225 ~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~  304 (426)
T 3c75_H          225 FPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPI  304 (426)
T ss_dssp             EEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCE
T ss_pred             ccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeee
Confidence            3433 56677778888888888666554322    11 1111   12345666554 4457899999987654321   1


Q ss_pred             eC----------CCCCEEEEEEeCC--EEEEEc----------CCCeEEEEEcCCCCcccccceeccccCCCeEEEEecC
Q 021744          226 SG----------PVGQVYAMAVGND--LLFAGT----------QDGAILAWKFNVTTNCFEPAASLKVHTDSNRAHFSRD  283 (308)
Q Consensus       226 ~~----------~~~~v~~~~~~~~--~l~~g~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~s~d  283 (308)
                      ..          .......++++|+  .++...          ..+.|.++|+.+.    +.+.++.....+....|+||
T Consensus       305 ~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~----kvv~~I~vg~~P~gia~spD  380 (426)
T 3c75_H          305 EALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG----ERINKIELGHEIDSINVSQD  380 (426)
T ss_dssp             ESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC----CEEEEEEEEEEECEEEECCS
T ss_pred             eeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC----eEEEEEECCCCcCeEEEccC
Confidence            10          0111123688888  433332          1357999999997    66777764443444499999


Q ss_pred             CC-eEEEee--ceEEEEee
Q 021744          284 VT-SLLGSV--SFIMFIGQ  299 (308)
Q Consensus       284 ~~-~l~~s~--s~~i~~~~  299 (308)
                      |+ +++++.  +..|.+..
T Consensus       381 g~~~lyv~n~~s~~VsVID  399 (426)
T 3c75_H          381 AEPLLYALSAGTQTLHIYD  399 (426)
T ss_dssp             SSCEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEEcCCCCeEEEEE
Confidence            99 777665  44444433

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.08  E-value=1.2e-08  Score=85.37  Aligned_cols=246  Identities=11%  Similarity=0.018  Sum_probs=146.9

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCeeeccCCCcEEEEECCCCCCcccc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      .+..+..++.++.|..|| .++..     +.. .+.     +.... .+.+.+++....++.+  |..+|. +++.....
T Consensus        29 ~~g~l~v~t~~~~l~~~d-~~g~~-----~~~-~~~-----~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~   93 (330)
T 3hxj_A           29 KNGTIYLGSSNKNLYAIN-TDGSV-----KWF-FKS-----GEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRF   93 (330)
T ss_dssp             TTSCEECSSTTTTTEEEC-TTSCE-----EES-SCG-----GGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGS
T ss_pred             cCCeEEEEcCCCEEEEEC-CCCcE-----EEE-Eec-----CCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEE
Confidence            455677778888899999 65511     110 110     11111 4566667766444444  888886 44433211


Q ss_pred             cceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCe
Q 021744          104 NRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ  183 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~  183 (308)
                      .. ........... ++....++.++.|..+|.. + +....+..+...+.++...+++. +..++.++.+..+|.. ++
T Consensus        94 ~~-~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g-~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~  167 (330)
T 3hxj_A           94 DT-KKAIVSDFTIF-EDILYVTSMDGHLYAINTD-G-TEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GT  167 (330)
T ss_dssp             CC------CCEEEE-TTEEEEECTTSEEEEECTT-S-CEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SC
T ss_pred             EC-CCCcccCceEE-CCEEEEEecCCEEEEEcCC-C-CEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CC
Confidence            11 11111112222 6667778889999999988 6 45555555555667777777666 6667788999999999 88


Q ss_pred             EEEEEeCCC-eeEEEE--cCCCEEEEEcCCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCC
Q 021744          184 CAGVINLGG-EVGCMI--SEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       184 ~~~~~~~~~-~v~~~~--~~~~~l~~~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~  258 (308)
                      .+..+.... .+.++.  .++.+.+ +. +.|..+| .+++.. ........+.++...++ .+..++.++.|..+|.. 
T Consensus       168 ~~~~~~~~~~~~~~~~~d~~g~l~v-~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~-  243 (330)
T 3hxj_A          168 EKWRFKTNDAITSAASIGKDGTIYF-GS-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPD-  243 (330)
T ss_dssp             EEEEEECSSCCCSCCEECTTCCEEE-ES-SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTT-
T ss_pred             EeEEEecCCCceeeeEEcCCCEEEE-Ee-CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCC-
Confidence            777776332 233332  4555444 44 8999999 666655 44444566888888888 77778888888888743 


Q ss_pred             CCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEEEee
Q 021744          259 TTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMFIGQ  299 (308)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~~~  299 (308)
                      +    +.+..+......+.. .+.+++.+.+++....|+...
T Consensus       244 g----~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          244 G----TEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAIN  281 (330)
T ss_dssp             S----CEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEEC
T ss_pred             C----CEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEEC
Confidence            3    333334333333344 555566666655554555554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.08  E-value=2.9e-08  Score=82.58  Aligned_cols=215  Identities=8%  Similarity=0.034  Sum_probs=136.0

Q ss_pred             eeEEecCCC-e-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEee-CCCeEEEEEcCCCceeeeEee
Q 021744           71 AKRFANNTW-G-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGE-KCKFLHSWTVGDGFKLLTQLE  147 (308)
Q Consensus        71 ~i~~s~~g~-~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~d~~i~iwd~~~~~~~~~~~~  147 (308)
                      ...|+|+|+ . ++...++.|..|+.. ++..  ........+..+.+.++|.++.+. .++.|.+|+.. + + +..+.
T Consensus        49 gp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~--~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g-~-~~~~~  122 (305)
T 3dr2_A           49 GPAWWEAQRTLVWSDLVGRRVLGWRED-GTVD--VLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G-Q-AHLLV  122 (305)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEETT-SCEE--EEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S-C-EEEEE
T ss_pred             CCeEeCCCCEEEEEECCCCEEEEEeCC-CCEE--EEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C-C-EEEEE
Confidence            689999998 4 888888999999873 4311  122223346778888999885555 45789999986 4 2 22222


Q ss_pred             Cc-----ccceEEEEEeCCCCEEEE----eeC-------------CCcEEEEeCCCCeEEEEEeCCCe-eEEEEcCCCEE
Q 021744          148 GH-----QKVVSGITLPSGSDKLYS----GSK-------------DETVRVWDCASGQCAGVINLGGE-VGCMISEGPWI  204 (308)
Q Consensus       148 ~h-----~~~v~~~~~~~~~~~l~s----~s~-------------dg~v~~wd~~~~~~~~~~~~~~~-v~~~~~~~~~l  204 (308)
                      .+     ...+..+++++++++.++    |..             .+.|..+|..+++.........+ -.++.++++.|
T Consensus       123 ~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~spdg~~l  202 (305)
T 3dr2_A          123 GRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTL  202 (305)
T ss_dssp             CEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEECTTSSEE
T ss_pred             eccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcceEEcCCCCEE
Confidence            11     134678999999998886    432             25688888876654433222222 22456888877


Q ss_pred             EEEc-C------CcEEEEEcCCCcee---ee-eCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceecccc
Q 021744          205 FIGV-T------NFVKAWNTQTNTDL---SL-SGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVH  272 (308)
Q Consensus       205 ~~~~-d------~~i~~wd~~~~~~~---~~-~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  272 (308)
                      +++. .      +.|.+||+..+...   .+ .........+++.++ .|.+++.+ .|.+|+...     +.+..+..+
T Consensus       203 yv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~~g-----~~~~~~~~~  276 (305)
T 3dr2_A          203 YVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-GVCVFDSDG-----QLLGHIPTP  276 (305)
T ss_dssp             EEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSS-EEEEECTTS-----CEEEEEECS
T ss_pred             EEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCC-cEEEECCCC-----CEEEEEECC
Confidence            6553 3      68999998765421   11 112334567888888 55555554 599998753     455555544


Q ss_pred             CCCeEE-EEecCCCeEEEeeceEEEEe
Q 021744          273 TDSNRA-HFSRDVTSLLGSVSFIMFIG  298 (308)
Q Consensus       273 ~~~v~~-~~s~d~~~l~~s~s~~i~~~  298 (308)
                      .. +.. +|+++++.|..+.+..||..
T Consensus       277 ~~-~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          277 GT-ASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             SC-CCEEEECTTSCEEEEEETTEEEEE
T ss_pred             Cc-eeEEEEeCCCCEEEEEcCCeEEEE
Confidence            43 555 99999887776655555544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.07  E-value=9.6e-08  Score=88.38  Aligned_cols=190  Identities=10%  Similarity=0.025  Sum_probs=115.2

Q ss_pred             CCceEEecCCCeEEEeecCCCCC-CCCCcccccCCCCCCc-ccc----ccceeEEecCCCe-eeccCCCcEEEEECCCCC
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNR-FPCPYLHRELPLPPAA-TAN----GAAAKRFANNTWG-RNNNFNNHSNNYRAGNSK   98 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~~~~~~~~-~gh----~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~   98 (308)
                      +..++.++.++.|+.+|+.+++. +....     ...... ...    ....+++  .+.. +.++.|+.|..+|.++++
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~  142 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDP-----QSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQ  142 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECC-----CCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcC-----CCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCC
Confidence            55677778889999999988732 11100     000000 000    0001222  3445 788889999999999987


Q ss_pred             Ccccccce-ee---eeeeeeeeecCCceEEee------CCCeEEEEEcCCCceeeeEeeCcc------------------
Q 021744           99 NSNINNRA-VI---KTDILCRNWVQGNCMYGE------KCKFLHSWTVGDGFKLLTQLEGHQ------------------  150 (308)
Q Consensus        99 ~~~~~~~~-~~---~~~~~~~~~~~~~~~~g~------~d~~i~iwd~~~~~~~~~~~~~h~------------------  150 (308)
                      .+-..... ..   ..+...-...++..+.+.      .++.|+.||..++ +.+..+....                  
T Consensus       143 ~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG-~~~W~~~~~~~~p~~~~~~~~~~~~~~~  221 (689)
T 1yiq_A          143 RAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETG-KEAWRFYTVPGDPKLPPEGKGMEIAAKT  221 (689)
T ss_dssp             EEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC-CEEEEEESSCCCTTSCCCSHHHHHHHTT
T ss_pred             EeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCC-cEEEEecccCCCcccccccccccccccc
Confidence            65322211 10   011111111245554443      3789999999999 6666554210                  


Q ss_pred             -------------cceEEEEEeCCCCEEEEeeCCCc-------------------EEEEeCCCCeEEEEEeCC-C-----
Q 021744          151 -------------KVVSGITLPSGSDKLYSGSKDET-------------------VRVWDCASGQCAGVINLG-G-----  192 (308)
Q Consensus       151 -------------~~v~~~~~~~~~~~l~s~s~dg~-------------------v~~wd~~~~~~~~~~~~~-~-----  192 (308)
                                   ..-..++++|+..+++.++.++.                   |..+|.++|+.+..++.. .     
T Consensus       222 ~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~  301 (689)
T 1yiq_A          222 WFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDY  301 (689)
T ss_dssp             CCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCC
T ss_pred             cCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccc
Confidence                         01125788998889998888764                   999999999999988731 1     


Q ss_pred             ----eeE--EEEcCCC---EEEEEc-CCcEEEEEcCCCcee
Q 021744          193 ----EVG--CMISEGP---WIFIGV-TNFVKAWNTQTNTDL  223 (308)
Q Consensus       193 ----~v~--~~~~~~~---~l~~~~-d~~i~~wd~~~~~~~  223 (308)
                          +..  .+..+++   .++.+. +|.++++|.++++.+
T Consensus       302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  342 (689)
T 1yiq_A          302 TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELL  342 (689)
T ss_dssp             CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEe
Confidence                111  1123554   566665 899999999999876

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.06  E-value=6.7e-08  Score=82.34  Aligned_cols=211  Identities=8%  Similarity=-0.063  Sum_probs=133.4

Q ss_pred             EEecCCCe-eeccC-----CCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceE-Eee----------CCCeEEEEE
Q 021744           73 RFANNTWG-RNNNF-----NNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCM-YGE----------KCKFLHSWT  135 (308)
Q Consensus        73 ~~s~~g~~-~s~~~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~----------~d~~i~iwd  135 (308)
                      ...|++.. .....     +++|.+.|..+.+.+.....+  .... +.++|++..+ .+.          .++.|.+||
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG--~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--FLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC--SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC--CCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            44677777 33332     679999999888765332221  2234 8999999762 222          367899999


Q ss_pred             cCCCceeeeEeeCcc-------cceEEEEEeCCCCEEEEeeC--CCcEEEEeCCCCeEEEEEeCCCeeEEEEcC-CCE-E
Q 021744          136 VGDGFKLLTQLEGHQ-------KVVSGITLPSGSDKLYSGSK--DETVRVWDCASGQCAGVINLGGEVGCMISE-GPW-I  204 (308)
Q Consensus       136 ~~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~l~s~s~--dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~-~~~-l  204 (308)
                      ..+. +.+.++.-..       .....++++||+++++.+..  ++.|.++|+.+++.+.++..... ..+.|. .+. +
T Consensus       116 ~~t~-~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-~~~~P~g~~~~~  193 (386)
T 3sjl_D          116 PVTL-LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-YHIFPTAPDTFF  193 (386)
T ss_dssp             TTTC-CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEE
T ss_pred             CCCC-eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-ceeecCCCceeE
Confidence            9998 6777664211       24567999999999887764  68999999999999999986553 223343 333 3


Q ss_pred             EEEcCCcEEEEEcCC-Ccee-eeeCC----CCCEE-EEEEe-CC-EEEEEcCCCeEEEEEcCCCCcccccceecc-----
Q 021744          205 FIGVTNFVKAWNTQT-NTDL-SLSGP----VGQVY-AMAVG-ND-LLFAGTQDGAILAWKFNVTTNCFEPAASLK-----  270 (308)
Q Consensus       205 ~~~~d~~i~~wd~~~-~~~~-~~~~~----~~~v~-~~~~~-~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-----  270 (308)
                      +.+.||.+.+.++.+ ++.. ....+    ..++. ...|. ++ .++..+.+|.|++.|+.+...  +.+..+.     
T Consensus       194 ~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~--~v~~~~~~~~~~  271 (386)
T 3sjl_D          194 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA--KFLPAVEALTEA  271 (386)
T ss_dssp             EEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC--EECCCEESSCHH
T ss_pred             EECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc--eeecceeccccc
Confidence            455588888888876 4432 11111    12222 23554 45 555567789999999976532  2222221     


Q ss_pred             -----ccCCCeEE-EEecCCCeEEEe
Q 021744          271 -----VHTDSNRA-HFSRDVTSLLGS  290 (308)
Q Consensus       271 -----~~~~~v~~-~~s~d~~~l~~s  290 (308)
                           -....... ++++++..+.+.
T Consensus       272 ~~~~g~~p~g~q~~a~~~~~~~lyV~  297 (386)
T 3sjl_D          272 ERADGWRPGGWQQVAYHRALDRIYLL  297 (386)
T ss_dssp             HHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             cccccccCCCcceeeECCCCCeEEEE
Confidence                 01122233 778888877754

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.05  E-value=4.4e-07  Score=77.64  Aligned_cols=216  Identities=10%  Similarity=-0.025  Sum_probs=130.8

Q ss_pred             CCCeEEEeecCCCCCCCCCcccccCCCC---CCccccccceeEEecCCCe-eeccC--CCcEEEEECCCCCCccc-ccce
Q 021744           34 RQKVCNYWRAGKCNRFPCPYLHRELPLP---PAATANGAAAKRFANNTWG-RNNNF--NNHSNNYRAGNSKNSNI-NNRA  106 (308)
Q Consensus        34 ~d~~i~~W~~~~~~~~~~~~~~~~~~~~---~~~~gh~~~~i~~s~~g~~-~s~~~--d~~i~vwd~~~~~~~~~-~~~~  106 (308)
                      .++.|.+||..+...      ..+.+.+   ....+.....++++|||++ +.+..  +++|.++| ++++.... ... 
T Consensus        95 ~~~~v~viD~~t~~~------~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-  166 (373)
T 2mad_H           95 RTDYVEVFDPVTFLP------IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-  166 (373)
T ss_pred             CCCeEEEEECCCCcE------EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-
Confidence            367899999876511      0111111   1101111116899999999 55543  58899999 88765422 111 


Q ss_pred             eeeeeeeeeeecCC--ceEEeeCCCeEEEEEcCCCceeeeEee-----Ccccce-EEEEEeCCCCEEEEeeCCCcEEEEe
Q 021744          107 VIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLE-----GHQKVV-SGITLPSGSDKLYSGSKDETVRVWD  178 (308)
Q Consensus       107 ~~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~~~~~~~~~~~-----~h~~~v-~~~~~~~~~~~l~s~s~dg~v~~wd  178 (308)
                          ..++.+.+.+  .+++.+.||.+.++|. ++ +......     ....++ ....+.+++..++..+..+.+.+.|
T Consensus       167 ----~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid  240 (373)
T 2mad_H          167 ----PTCYHIHPGAPSTFYLLCAQGGLAKTDH-AG-GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQAD  240 (373)
T ss_pred             ----CceEEEEeCCCceEEEEcCCCCEEEEEC-CC-cEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEe
Confidence                1123445555  2366678999999999 76 3332211     111221 2345666665555445788999999


Q ss_pred             CCCCe--EEEEEeC-----------CC--eeEEEEcCCCEEEEEc-----------CCcEEEEEcCCCcee-eeeCCCCC
Q 021744          179 CASGQ--CAGVINL-----------GG--EVGCMISEGPWIFIGV-----------TNFVKAWNTQTNTDL-SLSGPVGQ  231 (308)
Q Consensus       179 ~~~~~--~~~~~~~-----------~~--~v~~~~~~~~~l~~~~-----------d~~i~~wd~~~~~~~-~~~~~~~~  231 (308)
                      +.+..  .+..+..           +.  ....+.++++.+++..           ++.|.++|+.+++.+ ++. ....
T Consensus       241 ~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~  319 (373)
T 2mad_H          241 ISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHD  319 (373)
T ss_pred             ccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCC
Confidence            97652  2333321           11  1123457777776542           247999999999887 453 3346


Q ss_pred             EEEEEEeCC---EEEEEc-CCCeEEEEEcCCCCccccccee
Q 021744          232 VYAMAVGND---LLFAGT-QDGAILAWKFNVTTNCFEPAAS  268 (308)
Q Consensus       232 v~~~~~~~~---~l~~g~-~dg~i~iwd~~~~~~~~~~~~~  268 (308)
                      ...++|+||   +++++. .++.|.++|+.+.    +.+..
T Consensus       320 p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~----~vv~~  356 (373)
T 2mad_H          320 VDAISVAQDGGPDLYALSAGTEVLHIYDAGAG----DQDQS  356 (373)
T ss_pred             cCeEEECCCCCeEEEEEcCCCCeEEEEECCCC----CEEee
Confidence            889999998   466666 5899999999987    55555

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.03  E-value=2.1e-08  Score=93.01  Aligned_cols=222  Identities=11%  Similarity=0.075  Sum_probs=134.6

Q ss_pred             CCceE-----EecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCC------------
Q 021744           26 GGLST-----ADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNN------------   87 (308)
Q Consensus        26 ~~~~~-----s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~------------   87 (308)
                      +.+||     .|+.+.+|++||+.++.           .......+.....++|+ ||+. +.++.+.            
T Consensus       140 g~~lAy~~~~~G~~~~~i~v~dl~tg~-----------~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~  207 (693)
T 3iuj_A          140 GRILAYSLSLAGSDWREIHLMDVESKQ-----------PLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQ  207 (693)
T ss_dssp             SSEEEEEEECSSCCEEEEEEEETTTCS-----------EEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCC
T ss_pred             CCEEEEEEecCCCceEEEEEEECCCCC-----------CCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCC
Confidence            45555     23444789999998871           11111111111157999 9988 6666664            


Q ss_pred             -cEEEEECCCCCCcccccce----eeeeeeeeeeecCCce--EEee---CCCeEEEEEcCCCceeeeEeeCcccceEEEE
Q 021744           88 -HSNNYRAGNSKNSNINNRA----VIKTDILCRNWVQGNC--MYGE---KCKFLHSWTVGDGFKLLTQLEGHQKVVSGIT  157 (308)
Q Consensus        88 -~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~g~---~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~  157 (308)
                       .|++|++.+++........    +......+.+++++..  ++..   ....|+++|+.++......+..+....... 
T Consensus       208 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-  286 (693)
T 3iuj_A          208 HKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-  286 (693)
T ss_dssp             CEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-
T ss_pred             cEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-
Confidence             3999999776532111111    2223456788999976  2222   336899999987633456666676666655 


Q ss_pred             EeCCCCEEE-EeeCC---CcEEEEeCCCCeE--EEEE-eCCCeeEEEEcCCCEEEEEc--CC--cEEEEEcCCCceeeee
Q 021744          158 LPSGSDKLY-SGSKD---ETVRVWDCASGQC--AGVI-NLGGEVGCMISEGPWIFIGV--TN--FVKAWNTQTNTDLSLS  226 (308)
Q Consensus       158 ~~~~~~~l~-s~s~d---g~v~~wd~~~~~~--~~~~-~~~~~v~~~~~~~~~l~~~~--d~--~i~~wd~~~~~~~~~~  226 (308)
                      +++++..|+ ....+   +.|..+|+.+++.  ...+ .+...+..+.++++.|+...  ++  .|++||+..+....+.
T Consensus       287 ~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~  366 (693)
T 3iuj_A          287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVA  366 (693)
T ss_dssp             EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSCEEEEEC
T ss_pred             EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCCeeEEee
Confidence            566666554 44333   5799999988654  2233 33333337778888877554  44  7899999876655443


Q ss_pred             -CCCCCEEEEEEeCC---EEEEEcC---CCeEEEEEcCCCC
Q 021744          227 -GPVGQVYAMAVGND---LLFAGTQ---DGAILAWKFNVTT  260 (308)
Q Consensus       227 -~~~~~v~~~~~~~~---~l~~g~~---dg~i~iwd~~~~~  260 (308)
                       .....+..+.++++   ++++.+.   -+.|+.||+.+++
T Consensus       367 ~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          367 LPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             CSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             cCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence             23456777777776   3333322   2789999987753

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.03  E-value=2.6e-07  Score=85.31  Aligned_cols=190  Identities=11%  Similarity=0.041  Sum_probs=115.5

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCc------cccccceeEEecCCCe-eeccCCCcEEEEECCCCC
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAA------TANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSK   98 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~------~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~   98 (308)
                      +..++.++.++.|.-+|+.+++.     +.+..+.....      .......+++  .+.. +.++.|+.|..+|..+++
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~-----~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~  149 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNR-----IWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGK  149 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEE-----EEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred             CCEEEEECCCCeEEEEECCCCcE-----EEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCC
Confidence            55667777789999999888721     11101110000      0000112333  3445 778889999999999887


Q ss_pred             Ccccccce-e-e--eeeeeeeeecCCceEEeeC------CCeEEEEEcCCCceeeeEeeCcccc----------------
Q 021744           99 NSNINNRA-V-I--KTDILCRNWVQGNCMYGEK------CKFLHSWTVGDGFKLLTQLEGHQKV----------------  152 (308)
Q Consensus        99 ~~~~~~~~-~-~--~~~~~~~~~~~~~~~~g~~------d~~i~iwd~~~~~~~~~~~~~h~~~----------------  152 (308)
                      .+-..... . .  ..+...-...++..+.++.      ++.|+.+|..++ +.+..+......                
T Consensus       150 ~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG-~~~W~~~~~~~~~~~~~~~~~~~~g~~~  228 (677)
T 1kb0_A          150 EVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETG-ERKWRWFSVPGDPSKPFEDESMKRAART  228 (677)
T ss_dssp             EEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC-CEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred             EEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCC-cEEEEeccCCCCcccccccccccccccc
Confidence            65322211 0 0  1111111122444444443      799999999999 666665432111                


Q ss_pred             ----------------eEEEEEeCCCCEEEEeeCCC-------------------cEEEEeCCCCeEEEEEeCCC-----
Q 021744          153 ----------------VSGITLPSGSDKLYSGSKDE-------------------TVRVWDCASGQCAGVINLGG-----  192 (308)
Q Consensus       153 ----------------v~~~~~~~~~~~l~s~s~dg-------------------~v~~wd~~~~~~~~~~~~~~-----  192 (308)
                                      ...++++|++..++.++.++                   +|..+|.++++.+..++...     
T Consensus       229 w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd  308 (677)
T 1kb0_A          229 WDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWD  308 (677)
T ss_dssp             SCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred             ccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccc
Confidence                            13578899888888877664                   59999999999999887311     


Q ss_pred             ------eeE-EEEcCC---CEEEEEc-CCcEEEEEcCCCcee
Q 021744          193 ------EVG-CMISEG---PWIFIGV-TNFVKAWNTQTNTDL  223 (308)
Q Consensus       193 ------~v~-~~~~~~---~~l~~~~-d~~i~~wd~~~~~~~  223 (308)
                            ++. ....++   ..++.+. +|.++++|.++++.+
T Consensus       309 ~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l  350 (677)
T 1kb0_A          309 YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFI  350 (677)
T ss_dssp             CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEe
Confidence                  111 112366   5666666 899999999999887

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.98  E-value=9.9e-07  Score=75.99  Aligned_cols=217  Identities=9%  Similarity=-0.052  Sum_probs=137.4

Q ss_pred             EEe--cCCCe--eeccCCCcEEEEECCCC--CCcccccc--------eeeeeeeeeeeecCCceEEeeCC------CeEE
Q 021744           73 RFA--NNTWG--RNNNFNNHSNNYRAGNS--KNSNINNR--------AVIKTDILCRNWVQGNCMYGEKC------KFLH  132 (308)
Q Consensus        73 ~~s--~~g~~--~s~~~d~~i~vwd~~~~--~~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~d------~~i~  132 (308)
                      .++  +++++  +++..+++|.|.|+.+.  ++......        .-......+...|++.+++...+      +.|.
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~  167 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGIL  167 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEE
Confidence            346  77887  88889999999999633  21111100        01112445667788844554333      7899


Q ss_pred             EEEcCCCceeeeEeeCccc---ceEEEEEeCCCCEEEEee-------------------CCCcEEEEeCCCCeEEEEEeC
Q 021744          133 SWTVGDGFKLLTQLEGHQK---VVSGITLPSGSDKLYSGS-------------------KDETVRVWDCASGQCAGVINL  190 (308)
Q Consensus       133 iwd~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~s-------------------~dg~v~~wd~~~~~~~~~~~~  190 (308)
                      ++|.++. +.+.++.....   .-..+-|+|+++.+++..                   .+.+|.+||+.+++.+.++..
T Consensus       168 vlD~~T~-~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v  246 (462)
T 2ece_A          168 MLDHYSF-EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL  246 (462)
T ss_dssp             EECTTTC-CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred             EEECCCC-eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence            9999998 77877763222   234578899999888885                   478999999999998988885


Q ss_pred             CC---eeEE--E--EcCCCEEEEE-------cCCcEEEEEcCCCcee---e--eeCC----------------CCCEEEE
Q 021744          191 GG---EVGC--M--ISEGPWIFIG-------VTNFVKAWNTQTNTDL---S--LSGP----------------VGQVYAM  235 (308)
Q Consensus       191 ~~---~v~~--~--~~~~~~l~~~-------~d~~i~~wd~~~~~~~---~--~~~~----------------~~~v~~~  235 (308)
                      ..   ....  +  .+++++++++       .+++|.+|....++..   .  +...                ......|
T Consensus       247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I  326 (462)
T 2ece_A          247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI  326 (462)
T ss_dssp             CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred             CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence            41   1111  2  4778877653       3457776655444211   1  1110                2346789


Q ss_pred             EEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccccC----------C----CeEE-EEecCCCeEEEee
Q 021744          236 AVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT----------D----SNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       236 ~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------~----~v~~-~~s~d~~~l~~s~  291 (308)
                      .+++|   +.++.-..+.|.+||+..... .+.+..+....          .    .-.. .++|||++|+++.
T Consensus       327 ~lS~DGrfLYVSnrg~d~VavfdV~d~~~-~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          327 DISLDDKFLYLSLWGIGEVRQYDISNPFK-PVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EECTTSCEEEEEETTTTEEEEEECSSTTS-CEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCCCC-cEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            99999   445555688999999864311 24444443221          1    2344 9999999998665

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.98  E-value=1.5e-07  Score=76.04  Aligned_cols=186  Identities=11%  Similarity=0.001  Sum_probs=124.9

Q ss_pred             eeEEecCCCe-eeccC--CCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEee
Q 021744           71 AKRFANNTWG-RNNNF--NNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLE  147 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~  147 (308)
                      .++|+|++.. ++.+.  +++|++.|+.+++...............+.+..+..+++.-.++.+.++|..+. +.+.++.
T Consensus        25 Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~-~v~~~i~  103 (266)
T 2iwa_A           25 GLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTL-SNIKNFT  103 (266)
T ss_dssp             EEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTT-EEEEEEE
T ss_pred             cEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCC-cEEEEEE
Confidence            5899998766 55543  688999999988765332111110111233332212255667899999999998 7777775


Q ss_pred             CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCC---Ce---eEEE-EcCCCEEEEEc-CCcEEEEEcCC
Q 021744          148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG---GE---VGCM-ISEGPWIFIGV-TNFVKAWNTQT  219 (308)
Q Consensus       148 ~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~---~~---v~~~-~~~~~~l~~~~-d~~i~~wd~~~  219 (308)
                      -....  .+.+.+|++.++.+..+++|.++|.++.+.+..+...   .+   ...+ +.++++.+... ++.|.+.|..+
T Consensus       104 ~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~t  181 (266)
T 2iwa_A          104 HQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKD  181 (266)
T ss_dssp             CCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTT
T ss_pred             CCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCC
Confidence            32121  2445567777766667899999999999988888732   22   2222 34665444443 78999999999


Q ss_pred             Ccee-eeeCC-------------CCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCC
Q 021744          220 NTDL-SLSGP-------------VGQVYAMAVGND---LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       220 ~~~~-~~~~~-------------~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~  259 (308)
                      ++.. .+...             ....+.|+++|+   +++++...++|...++...
T Consensus       182 g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          182 GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            9877 33321             136789999998   7888888999999998764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.97  E-value=6.7e-08  Score=80.89  Aligned_cols=210  Identities=10%  Similarity=0.045  Sum_probs=133.6

Q ss_pred             CCCeeeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEE
Q 021744           77 NTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGI  156 (308)
Q Consensus        77 ~g~~~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~  156 (308)
                      ++....++.++.|..+|.+ ++..... ......+......+++....++.++.|..+|.. + +.+..+......+.++
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~-~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g-~~~~~~~~~~~~~~~~  182 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRF-KTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-G-TEKWRFKTNDAITSAA  182 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEE-ECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-S-CEEEEEECSSCCCSCC
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEE-cCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-C-CEeEEEecCCCceeee
Confidence            4444677788889999986 5432111 111112344455557777788888999999998 6 5566666555667778


Q ss_pred             EEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCC-CeeEEE--EcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEE
Q 021744          157 TLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-GEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVY  233 (308)
Q Consensus       157 ~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~-~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~  233 (308)
                      .+.+++...+..   +.+..+| .+++.+..+... ..+.++  .+++.+.+.+.++.+..+|........+......+.
T Consensus       183 ~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~  258 (330)
T 3hxj_A          183 SIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKTGKRIES  258 (330)
T ss_dssp             EECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTSCEEEEEECSSCCCS
T ss_pred             EEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCCCCEeEEeeCCCCccc
Confidence            887777755544   7899999 777777766633 334343  345566555567888888754333334444444444


Q ss_pred             EEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEEEee
Q 021744          234 AMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMFIGQ  299 (308)
Q Consensus       234 ~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~~~  299 (308)
                      ++.+.++ .|..++.+|.|..+|. ++    +.+..+......+.+ ...++|.+.+++....+++..
T Consensus       259 ~~~~~~~g~l~v~t~~ggl~~~d~-~g----~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~  321 (330)
T 3hxj_A          259 SPVIGNTDTIYFGSYDGHLYAINP-DG----TEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALF  321 (330)
T ss_dssp             CCEECTTSCEEEECTTCEEEEECT-TS----CEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEE
T ss_pred             cceEcCCCeEEEecCCCCEEEECC-CC----cEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEe
Confidence            5666656 7888888999999985 44    434444444455556 666888877776655555544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.96  E-value=1.4e-07  Score=78.37  Aligned_cols=204  Identities=9%  Similarity=0.025  Sum_probs=123.4

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccc-cc-eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANG-AA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      +.+++++..++.|..|+.... .             ..+..+. .. .++++++|++ ++...++.|.+|+.+ ++....
T Consensus        57 ~~l~~~d~~~~~i~~~~~~g~-~-------------~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~  121 (305)
T 3dr2_A           57 RTLVWSDLVGRRVLGWREDGT-V-------------DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLL  121 (305)
T ss_dssp             TEEEEEETTTTEEEEEETTSC-E-------------EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred             CEEEEEECCCCEEEEEeCCCC-E-------------EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEE
Confidence            347888888999999987422 0             0001111 12 6899999998 665566789999975 432111


Q ss_pred             cc--cee-eeeeeeeeeecCCceEE-----eeC-------------CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCC
Q 021744          103 NN--RAV-IKTDILCRNWVQGNCMY-----GEK-------------CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG  161 (308)
Q Consensus       103 ~~--~~~-~~~~~~~~~~~~~~~~~-----g~~-------------d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~  161 (308)
                      ..  ... ...+..+.+.++|....     |..             .+.|..+|..++ +... +. .......++|+|+
T Consensus       122 ~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-~~~~-~~-~~~~p~gl~~spd  198 (305)
T 3dr2_A          122 VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-PLQR-MA-DLDHPNGLAFSPD  198 (305)
T ss_dssp             ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-CCEE-EE-EESSEEEEEECTT
T ss_pred             EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC-cEEE-Ee-cCCCCcceEEcCC
Confidence            00  011 11255678888887744     332             356888888666 3322 22 4456788999999


Q ss_pred             CCEEEEeeCC------CcEEEEeCCCCeEE--EEEe--CCCee--EEEEcCCCEEEEEcCCcEEEEEcCCCceeeeeCCC
Q 021744          162 SDKLYSGSKD------ETVRVWDCASGQCA--GVIN--LGGEV--GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPV  229 (308)
Q Consensus       162 ~~~l~s~s~d------g~v~~wd~~~~~~~--~~~~--~~~~v--~~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~  229 (308)
                      ++.|+.+...      +.|.+|++..+...  ..+.  .....  ..+.+++++.++. .+.|.+||........+..+.
T Consensus       199 g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~g~~~~~~~~~~  277 (305)
T 3dr2_A          199 EQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSDGQLLGHIPTPG  277 (305)
T ss_dssp             SSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSEEEEECTTSCEEEEEECSS
T ss_pred             CCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCcEEEECCCCCEEEEEECCC
Confidence            9987776655      78999998765411  1121  11111  2334677755444 445999998544333555444


Q ss_pred             CCEEEEEEeCC--EEEEEcCCC
Q 021744          230 GQVYAMAVGND--LLFAGTQDG  249 (308)
Q Consensus       230 ~~v~~~~~~~~--~l~~g~~dg  249 (308)
                       .+.+++|.++  .|..++.++
T Consensus       278 -~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          278 -TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             -CCCEEEECTTSCEEEEEETTE
T ss_pred             -ceeEEEEeCCCCEEEEEcCCe
Confidence             5888999887  666666553

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.95  E-value=4.8e-07  Score=75.93  Aligned_cols=197  Identities=12%  Similarity=-0.011  Sum_probs=121.8

Q ss_pred             CCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           24 GGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        24 ~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      +.+.++++...++.|..|+...+...     .  ...+      ... +++++|+|.+ ++ ..+ .|.+||.++++...
T Consensus        59 ~~~~l~~~d~~~~~i~~~d~~~~~~~-----~--~~~~------~~v~~i~~~~dg~l~v~-~~~-gl~~~d~~~g~~~~  123 (326)
T 2ghs_A           59 ASGTAWWFNILERELHELHLASGRKT-----V--HALP------FMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTL  123 (326)
T ss_dssp             TTTEEEEEEGGGTEEEEEETTTTEEE-----E--EECS------SCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEE
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEE-----E--EECC------CcceEEEEeCCCeEEEE-ECC-CEEEEECCCCcEEE
Confidence            44678888888999999998765110     0  0000      112 6889999988 54 334 49999987765321


Q ss_pred             cccc---eeeeeeeeeeeecCCceEEeeC-------CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEE-EeeC
Q 021744          102 INNR---AVIKTDILCRNWVQGNCMYGEK-------CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGSK  170 (308)
Q Consensus       102 ~~~~---~~~~~~~~~~~~~~~~~~~g~~-------d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~  170 (308)
                      ....   .....+..+.+.++|.+..+..       .+.|..++  ++ +. ..+..+......++|+|+++.++ +.+.
T Consensus       124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~  199 (326)
T 2ghs_A          124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-KV-TKLFADISIPNSICFSPDGTTGYFVDTK  199 (326)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-EE-EEEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred             EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-cE-EEeeCCCcccCCeEEcCCCCEEEEEECC
Confidence            1110   1112467788889998744432       24566666  44 33 23333445677999999998764 4456


Q ss_pred             CCcEEEEeCC--CC-eE-----EEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEE
Q 021744          171 DETVRVWDCA--SG-QC-----AGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAV  237 (308)
Q Consensus       171 dg~v~~wd~~--~~-~~-----~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~  237 (308)
                      ++.|.+||+.  ++ +.     ...+. .......+  .+++.+.++.. ++.|..||.. ++.. .+..+...+.+++|
T Consensus       200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~~~~~~~~~af  278 (326)
T 2ghs_A          200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAF  278 (326)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEE
T ss_pred             CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEECCCCCcEEEEE
Confidence            7899999986  55 32     11121 12333333  35677666654 6789999984 5544 56666667999999


Q ss_pred             e-CC
Q 021744          238 G-ND  240 (308)
Q Consensus       238 ~-~~  240 (308)
                      + ++
T Consensus       279 ~g~d  282 (326)
T 2ghs_A          279 IGPD  282 (326)
T ss_dssp             ESTT
T ss_pred             ecCC
Confidence            8 76

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.91  E-value=1.9e-06  Score=69.53  Aligned_cols=180  Identities=8%  Similarity=-0.075  Sum_probs=121.9

Q ss_pred             eeeeeecCCce-EEeeC--CCeEEEEEcCCCceeeeEeeCcc-cceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEE
Q 021744          112 ILCRNWVQGNC-MYGEK--CKFLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV  187 (308)
Q Consensus       112 ~~~~~~~~~~~-~~g~~--d~~i~iwd~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~  187 (308)
                      .-+.+.+++.. ++.+.  ++.|+++|+.++ +.+..+.-.. .....+++.. +...++.-.++.+.++|..+.+.+.+
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg-~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~  101 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYGRSSVRQVALQTG-KVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKN  101 (266)
T ss_dssp             EEEEECSTTEEEEEECSTTTCEEEEEETTTC-CEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred             ccEEEeCCCeEEEECCCCCCCEEEEEECCCC-CEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEE
Confidence            45677777655 44333  689999999999 6777665211 2223556653 23345555688999999999999999


Q ss_pred             EeCC-CeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeC--C---CCCEEEEEEeCC-EEEEEcCCCeEEEEEcCC
Q 021744          188 INLG-GEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSG--P---VGQVYAMAVGND-LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       188 ~~~~-~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~--~---~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~  258 (308)
                      +..+ ..-..+.++++.++++. ++.|.++|..+.+.. .+.-  .   -..++.+.+... .++....++.|.+.|..+
T Consensus       102 i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~t  181 (266)
T 2iwa_A          102 FTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKD  181 (266)
T ss_dssp             EECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTT
T ss_pred             EECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCC
Confidence            9865 44456778888777665 789999999998766 3331  1   124678888844 455555688999999999


Q ss_pred             CCcccccceecccc-------------CCCeEE-EEecCCCeEEEee--ceEEEE
Q 021744          259 TTNCFEPAASLKVH-------------TDSNRA-HFSRDVTSLLGSV--SFIMFI  297 (308)
Q Consensus       259 ~~~~~~~~~~~~~~-------------~~~v~~-~~s~d~~~l~~s~--s~~i~~  297 (308)
                      +    +.+..+...             ....+. +|+|+++.+++++  ...++.
T Consensus       182 g----~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~  232 (266)
T 2iwa_A          182 G----TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE  232 (266)
T ss_dssp             C----CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred             C----cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence            7    445544321             124466 9999998887666  444444

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.91  E-value=1.4e-07  Score=79.82  Aligned_cols=217  Identities=10%  Similarity=0.064  Sum_probs=131.0

Q ss_pred             eeEEecCCCe-eecc--CCCcEEEEECCCCCCccc-----ccceeeeeeeeeeeecCCce-EEeeC-----CCeEEEEEc
Q 021744           71 AKRFANNTWG-RNNN--FNNHSNNYRAGNSKNSNI-----NNRAVIKTDILCRNWVQGNC-MYGEK-----CKFLHSWTV  136 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~--~d~~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~g~~-----d~~i~iwd~  136 (308)
                      .++++|+|+. ++..  .++.++||.+.+++...-     ....+...+..+.+.+++.+ ++...     +..|.+||+
T Consensus        21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~  100 (343)
T 2qe8_A           21 NITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDT  100 (343)
T ss_dssp             EEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEET
T ss_pred             eEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEEC
Confidence            6899999998 6643  234366676653332100     11122334778888888876 43322     578999999


Q ss_pred             CCCceeeeEeeCc------ccceEEEEEeCCCCEE-EEee---CCCcEEEEeCCCCeEEEEEeC-C------------C-
Q 021744          137 GDGFKLLTQLEGH------QKVVSGITLPSGSDKL-YSGS---KDETVRVWDCASGQCAGVINL-G------------G-  192 (308)
Q Consensus       137 ~~~~~~~~~~~~h------~~~v~~~~~~~~~~~l-~s~s---~dg~v~~wd~~~~~~~~~~~~-~------------~-  192 (308)
                      .++ +.++.+...      ...+..+++++++..+ ++-.   .++.|.+||+.+++....+.. .            + 
T Consensus       101 ~tg-~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~  179 (343)
T 2qe8_A          101 LNN-QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGV  179 (343)
T ss_dssp             TTT-EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTE
T ss_pred             CCC-eEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCE
Confidence            988 655555432      2356899999865454 5555   678999999998876655421 0            0 


Q ss_pred             ----------------eeE--EEEcCCCEEEEEc-CC-cEEEEEcC---CCc-----e---eeeeCCCCCEEEEEEeCC-
Q 021744          193 ----------------EVG--CMISEGPWIFIGV-TN-FVKAWNTQ---TNT-----D---LSLSGPVGQVYAMAVGND-  240 (308)
Q Consensus       193 ----------------~v~--~~~~~~~~l~~~~-d~-~i~~wd~~---~~~-----~---~~~~~~~~~v~~~~~~~~-  240 (308)
                                      ...  ++.++++.|+.+. .+ .+..++..   .+.     .   +...++......++++++ 
T Consensus       180 ~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G  259 (343)
T 2qe8_A          180 PVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDH  259 (343)
T ss_dssp             ECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTC
T ss_pred             EEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCC
Confidence                            012  2346777777654 33 55555532   111     0   011233345667899988 


Q ss_pred             -EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          241 -LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       241 -~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                       ++++...++.|.+||..+++  ...+... .+...... +|.+++.+++++.
T Consensus       260 ~l~va~~~~~~V~~~d~~~G~--~~~~~~~-~~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          260 NIYVGDLAHSAIGVITSADRA--YKLLVTD-EKLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             CEEEEEGGGTEEEEEETTTTE--EEEEEEC-GGGSCEEEEEECTTSCEEEEEC
T ss_pred             CEEEEccCCCeEEEEECCCCC--EEEEEEC-CceecCCeeEECCCCcEEEEeC
Confidence             77778888999999984442  1222211 12345666 9999988777654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.87  E-value=1.2e-06  Score=70.09  Aligned_cols=173  Identities=13%  Similarity=0.081  Sum_probs=117.9

Q ss_pred             eeeeeecCCce-EEeeCCC--eEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEE-EeeCCCcEEEEeCCCCeEEEE
Q 021744          112 ILCRNWVQGNC-MYGEKCK--FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGV  187 (308)
Q Consensus       112 ~~~~~~~~~~~-~~g~~d~--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~dg~v~~wd~~~~~~~~~  187 (308)
                      .-+.|. ++.+ .+.+.+|  .|+++|++++ +.+..+.-. .......+.+++..|. ..-.++.+.++|.++.+.+.+
T Consensus        46 qGL~~~-~~~LyestG~~g~S~v~~vD~~Tg-kv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           46 EGFFYR-NGYFYESTGLNGRSSIRKVDIESG-KTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEECTTTC-CEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             ceEEEE-CCEEEEECCCCCCceEEEEECCCC-cEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            455666 5544 6666655  8999999999 677776543 3333332333344554 444588999999999999999


Q ss_pred             EeCCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeC--CC---CCEEEEEEeCC-EEEEEcCCCeEEEEEcCCC
Q 021744          188 INLGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSG--PV---GQVYAMAVGND-LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       188 ~~~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~--~~---~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~  259 (308)
                      +..+..-..++++++.|+.+. ++.|.++|..+.+.. ++.-  ..   ..++.+.+... +++..-.++.|.+.|..++
T Consensus       123 i~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG  202 (262)
T 3nol_A          123 FNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETG  202 (262)
T ss_dssp             EECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTC
T ss_pred             EECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEECCCC
Confidence            996665556678888777665 778999999998876 3322  11   34566777755 5555556889999999987


Q ss_pred             Ccccccceeccc------------cCCCeEE-EEecCCCeEEEee
Q 021744          260 TNCFEPAASLKV------------HTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       260 ~~~~~~~~~~~~------------~~~~v~~-~~s~d~~~l~~s~  291 (308)
                          +.+..+..            .....+. +|+|+++.|++++
T Consensus       203 ----~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          203 ----KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             ----BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             ----cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence                44433321            1234566 9999988888776

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.85  E-value=8.3e-08  Score=81.66  Aligned_cols=238  Identities=9%  Similarity=-0.045  Sum_probs=139.2

Q ss_pred             CCCCceEEecCCC----eEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eecc----------CCCc
Q 021744           24 GGGGLSTADTRQK----VCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNN----------FNNH   88 (308)
Q Consensus        24 ~~~~~~~s~s~d~----~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~----------~d~~   88 (308)
                      .....+++...++    +|.+.|..+.           ........|... .+.++||++. +.+.          .+++
T Consensus        30 ~~~~~yV~~~~~~~~~d~vsvID~~t~-----------~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~   97 (368)
T 1mda_H           30 ISRRSHITLPAYFAGTTENWVSCAGCG-----------VTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDY   97 (368)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTT-----------EEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred             CCCeEEEECCccCCccceEEEEECCCC-----------eEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCE
Confidence            4455677777666    8889998876           111111122222 4899999998 4443          4788


Q ss_pred             EEEEECCCCCCcccccce--e----eeeeeeeeeecCCce-EEeeC--CCeEEE--EEcCCCceeeeE------eeCc--
Q 021744           89 SNNYRAGNSKNSNINNRA--V----IKTDILCRNWVQGNC-MYGEK--CKFLHS--WTVGDGFKLLTQ------LEGH--  149 (308)
Q Consensus        89 i~vwd~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~-~~g~~--d~~i~i--wd~~~~~~~~~~------~~~h--  149 (308)
                      |.+||+.+.+.......+  .    ......+.++|+|.. +.+..  +..+.+  +|+.+- ..+..      ...+  
T Consensus        98 VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv-~~i~v~~~~~~~p~g~~  176 (368)
T 1mda_H           98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD-QLTKSASCFHIHPGAAA  176 (368)
T ss_dssp             EEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEE-EEEECSSCCCCEEEETT
T ss_pred             EEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhc-eEEECCCceEEccCCCe
Confidence            999999988765432211  0    123667889999976 33332  467888  887551 11100      0000  


Q ss_pred             -------ccceEEEEE--------------------------eCCCCEEEEeeCCCcEEEEeCCCC--eEEEEEeC----
Q 021744          150 -------QKVVSGITL--------------------------PSGSDKLYSGSKDETVRVWDCASG--QCAGVINL----  190 (308)
Q Consensus       150 -------~~~v~~~~~--------------------------~~~~~~l~s~s~dg~v~~wd~~~~--~~~~~~~~----  190 (308)
                             .+.+..+..                          .+++..++..+. +.|.+.|+.+.  +.+..+..    
T Consensus       177 ~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~  255 (368)
T 1mda_H          177 THYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESG  255 (368)
T ss_dssp             EEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTH
T ss_pred             EEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccc
Confidence                   000000110                          333344444444 67777777543  22222211    


Q ss_pred             ---------CCeeEEEEcCCCEEEEE-c-C--------CcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC---EEEEEc-
Q 021744          191 ---------GGEVGCMISEGPWIFIG-V-T--------NFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGT-  246 (308)
Q Consensus       191 ---------~~~v~~~~~~~~~l~~~-~-d--------~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~---~l~~g~-  246 (308)
                               ......+.++++.++++ . .        +.+.++|+.+.+.+ ++... .....|+|+||   .+++.. 
T Consensus       256 ~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~  334 (368)
T 1mda_H          256 RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSA  334 (368)
T ss_dssp             HHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEET
T ss_pred             ccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC-CCcceEEECCCCCEEEEEccC
Confidence                     11113567888877754 2 2        35679999999877 44322 26889999998   556666 


Q ss_pred             CCCeEEEEEcCCCCcccccceeccccCCCeEEEE
Q 021744          247 QDGAILAWKFNVTTNCFEPAASLKVHTDSNRAHF  280 (308)
Q Consensus       247 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~  280 (308)
                      .++.|.++|+.+.    +.+.++.....+-..++
T Consensus       335 ~~~~VsVID~~t~----kvv~~I~vg~~P~~i~~  364 (368)
T 1mda_H          335 GTEVLDIYDAASD----QDQSSVELDKGPESLSV  364 (368)
T ss_dssp             TTTEEEEEESSSC----EEEEECCCCSCCCEEEC
T ss_pred             CCCeEEEEECCCC----cEEEEEECCCCCCEEEe
Confidence            5899999999997    77777775554443333

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.84  E-value=2.2e-07  Score=82.77  Aligned_cols=214  Identities=11%  Similarity=0.002  Sum_probs=139.3

Q ss_pred             cCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeee-e-cCCceEEe-------------------eCCCeEE
Q 021744           76 NNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRN-W-VQGNCMYG-------------------EKCKFLH  132 (308)
Q Consensus        76 ~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~g-------------------~~d~~i~  132 (308)
                      +||++  ++...+..|.+.|+++.+...............+.+ . |++.++..                   -.++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            48888  666667789999998876443222111122333443 2 66655322                   2356899


Q ss_pred             EEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCC--------------------------------------cE
Q 021744          133 SWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE--------------------------------------TV  174 (308)
Q Consensus       133 iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg--------------------------------------~v  174 (308)
                      +.|..+. +...++.--. ....++++|+++++++.+.+.                                      .|
T Consensus       179 vID~~t~-~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          179 AVDADKW-EVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEETTTT-EEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEECCCC-eEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            9999988 6776665222 456788999999998887553                                      47


Q ss_pred             EEEeCCC--CeE-EEEEeC--CCeeEEEEcCCCEEEEEc--CCcEEEEEcCCCc------------eeeeeCCCCCEEEE
Q 021744          175 RVWDCAS--GQC-AGVINL--GGEVGCMISEGPWIFIGV--TNFVKAWNTQTNT------------DLSLSGPVGQVYAM  235 (308)
Q Consensus       175 ~~wd~~~--~~~-~~~~~~--~~~v~~~~~~~~~l~~~~--d~~i~~wd~~~~~------------~~~~~~~~~~v~~~  235 (308)
                      .+.|.++  ++. +..+..  ...-..++|||++++++.  +.+|.++|+.+.+            ......-......+
T Consensus       257 ~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~  336 (595)
T 1fwx_A          257 KVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHT  336 (595)
T ss_dssp             EEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEE
T ss_pred             EEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceE
Confidence            7778777  444 455552  222334578999998765  8899999999753            12111223467889


Q ss_pred             EEeCC--EEEEEcCCCeEEEEEcCCCC------cccccceeccccCCCe-----EE-EEecCCCeEEEee
Q 021744          236 AVGND--LLFAGTQDGAILAWKFNVTT------NCFEPAASLKVHTDSN-----RA-HFSRDVTSLLGSV  291 (308)
Q Consensus       236 ~~~~~--~l~~g~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~v-----~~-~~s~d~~~l~~s~  291 (308)
                      +|+|+  ...+.-.|+.|.+||+....      ...+.+.++..|-.+-     .. .++|||++|+++.
T Consensus       337 aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N  406 (595)
T 1fwx_A          337 AFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  406 (595)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             EECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence            99999  55567789999999987621      1125566666554432     22 5689999999877

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.81  E-value=1e-06  Score=70.55  Aligned_cols=172  Identities=5%  Similarity=-0.105  Sum_probs=118.3

Q ss_pred             eeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceE--EEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe
Q 021744          112 ILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVS--GITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN  189 (308)
Q Consensus       112 ~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~  189 (308)
                      .-+.|...-.+++.+.+|.|+++|++++ +.+..+.  .....  .+++..+ +..+..-.++.+.++|.++.+.+.++.
T Consensus        58 qGL~~~~~~Ly~stG~~g~v~~iD~~Tg-kv~~~~l--~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ti~  133 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQGTLRQLSLESA-QPVWMER--LGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRERTTR  133 (268)
T ss_dssp             EEEEEETTEEEEEETTTTEEEECCSSCS-SCSEEEE--CTTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred             ceEEEECCEEEEEcCCCCEEEEEECCCC-cEEeEEC--CCCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEEEEe
Confidence            3455553223377888899999999999 5666552  22333  3555432 344455578999999999999999999


Q ss_pred             CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eee--CCC---CCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCc
Q 021744          190 LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLS--GPV---GQVYAMAVGND-LLFAGTQDGAILAWKFNVTTN  261 (308)
Q Consensus       190 ~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~--~~~---~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~  261 (308)
                      ....-..++++++.|+++. ++.|.++|..+.+.. ++.  .+.   ..++.+.+... +++..-.++.|.+.|..++  
T Consensus       134 ~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG--  211 (268)
T 3nok_A          134 YSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATG--  211 (268)
T ss_dssp             CSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTC--
T ss_pred             CCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCC--
Confidence            6655566778888888766 889999999998876 332  222   24577788755 5555556889999999987  


Q ss_pred             ccccceeccc-------------cCCCeEE-EEecCCCeEEEee
Q 021744          262 CFEPAASLKV-------------HTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       262 ~~~~~~~~~~-------------~~~~v~~-~~s~d~~~l~~s~  291 (308)
                        +.+..+..             .....+. +|+|+++.|++++
T Consensus       212 --~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          212 --TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             --BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             --cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence              44433321             1235566 9999888777665

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.80  E-value=7.7e-07  Score=71.19  Aligned_cols=170  Identities=13%  Similarity=0.050  Sum_probs=111.7

Q ss_pred             eeEEecCCCe-eeccCCC--cEEEEECCCCCCcccccceeeeeeeeeeeecCC-ce-EEeeCCCeEEEEEcCCCceeeeE
Q 021744           71 AKRFANNTWG-RNNNFNN--HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG-NC-MYGEKCKFLHSWTVGDGFKLLTQ  145 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~d~~i~iwd~~~~~~~~~~  145 (308)
                      .+.|+ ++.. .+.+.++  .|+++|+++++.+.....  ..........+.+ .. +..-.++.+.+||..+. +.+.+
T Consensus        47 GL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~-~~~~t  122 (262)
T 3nol_A           47 GFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL--GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNL-RQVRS  122 (262)
T ss_dssp             EEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC--CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTC-CEEEE
T ss_pred             eEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec--CCccceeEEEEeCCEEEEEEeeCCEEEEEECccC-cEEEE
Confidence            57888 6656 7777665  899999999876533221  1122222222233 33 55557899999999998 77888


Q ss_pred             eeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC---CCee---EEE-EcCCCEEEEEc-CCcEEEEEc
Q 021744          146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL---GGEV---GCM-ISEGPWIFIGV-TNFVKAWNT  217 (308)
Q Consensus       146 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~---~~~v---~~~-~~~~~~l~~~~-d~~i~~wd~  217 (308)
                      +.-..   ....+.+++..|+....++.|.++|.++.+.+..+..   ..++   ..+ +.++++.+... ++.|.+.|.
T Consensus       123 i~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp  199 (262)
T 3nol_A          123 FNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDP  199 (262)
T ss_dssp             EECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECT
T ss_pred             EECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEEC
Confidence            77422   2233445677777666688899999999999988873   2232   222 45776555444 789999999


Q ss_pred             CCCcee-eeeCC------------CCCEEEEEEeCC---EEEEEcC
Q 021744          218 QTNTDL-SLSGP------------VGQVYAMAVGND---LLFAGTQ  247 (308)
Q Consensus       218 ~~~~~~-~~~~~------------~~~v~~~~~~~~---~l~~g~~  247 (308)
                      ++++.. .+...            .+..+.|+++|+   ++++|-.
T Consensus       200 ~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          200 ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            999876 33221            235699999997   5555543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.78  E-value=2.4e-06  Score=74.03  Aligned_cols=179  Identities=7%  Similarity=-0.056  Sum_probs=117.2

Q ss_pred             cCCCe--eeccCC----CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEee----------CCCeEEEEEcCC
Q 021744           76 NNTWG--RNNNFN----NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGE----------KCKFLHSWTVGD  138 (308)
Q Consensus        76 ~~g~~--~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~----------~d~~i~iwd~~~  138 (308)
                      |++..  ++...+    ++|.+.|..+.+.+.....+  ... .+.++|++.. +.+.          .++.|.++|..+
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG--~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t  158 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG--FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT  158 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC--SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC--CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence            45554  444433    79999999888765332222  224 7889999965 2222          467999999999


Q ss_pred             CceeeeEeeCc-------ccceEEEEEeCCCCEEEEeeC--CCcEEEEeCCCCeEEEEEeCCCeeEEEEcCC-CE-EEEE
Q 021744          139 GFKLLTQLEGH-------QKVVSGITLPSGSDKLYSGSK--DETVRVWDCASGQCAGVINLGGEVGCMISEG-PW-IFIG  207 (308)
Q Consensus       139 ~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~s~--dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~-~~-l~~~  207 (308)
                      . +.+..+.--       ......++++||+++++.+..  +++|.+.|+.+.+.+..+..... ..+.+++ +. ++.+
T Consensus       159 ~-~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~g~~~~v~~~  236 (426)
T 3c75_H          159 F-LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIFPASPTVFYMNC  236 (426)
T ss_dssp             C-CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEE
T ss_pred             C-cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeeccCCCcEEEEEc
Confidence            8 677666421       124567899999999988774  57899999999999999886553 2234433 33 3345


Q ss_pred             cCCcEEEEEcCCCceee-----eeCCCCCE-EEEEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744          208 VTNFVKAWNTQTNTDLS-----LSGPVGQV-YAMAVGND--LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       208 ~d~~i~~wd~~~~~~~~-----~~~~~~~v-~~~~~~~~--~l~~g~~dg~i~iwd~~~~  259 (308)
                      .||.+.+.++.+++...     +.....++ ..+.+.++  .++..+..+.|.+.|....
T Consensus       237 ~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~  296 (426)
T 3c75_H          237 RDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAE  296 (426)
T ss_dssp             TTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred             CCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence            58888888886555441     11111111 23456776  5555567889999998754

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.76  E-value=1.6e-06  Score=69.40  Aligned_cols=169  Identities=10%  Similarity=0.026  Sum_probs=114.6

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeee--eeeecCCceEEeeCCCeEEEEEcCCCceeeeEee
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDIL--CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLE  147 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~  147 (308)
                      .+.|+. +.. ++.+.++.|+++|+++++.+...   .......  +.+..+..++..-.++.+.+||.++. +.+.++.
T Consensus        59 GL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~---l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl-~~~~ti~  133 (268)
T 3nok_A           59 GLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME---RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPP-QRERTTR  133 (268)
T ss_dssp             EEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE---ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTT-EEEEEEE
T ss_pred             eEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE---CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcC-cEEEEEe
Confidence            467763 444 88888889999999999876543   2222222  33333323355667999999999999 7888887


Q ss_pred             CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC---CCee---EEE-EcCCCEEEEEc-CCcEEEEEcCC
Q 021744          148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL---GGEV---GCM-ISEGPWIFIGV-TNFVKAWNTQT  219 (308)
Q Consensus       148 ~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~---~~~v---~~~-~~~~~~l~~~~-d~~i~~wd~~~  219 (308)
                      -. ..-..++  +++..|+.+..++.|.++|.++.+.+..+..   ..++   ..+ +.++++.+... ++.|.+.|.++
T Consensus       134 ~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~T  210 (268)
T 3nok_A          134 YS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPAT  210 (268)
T ss_dssp             CS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTT
T ss_pred             CC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCC
Confidence            42 2224444  4577777777789999999999999988873   2222   222 45776555443 77999999999


Q ss_pred             Ccee-eeeC-------------CCCCEEEEEEeCC---EEEEEcC
Q 021744          220 NTDL-SLSG-------------PVGQVYAMAVGND---LLFAGTQ  247 (308)
Q Consensus       220 ~~~~-~~~~-------------~~~~v~~~~~~~~---~l~~g~~  247 (308)
                      ++.. .+..             ..+..+.|+++|+   ++++|-.
T Consensus       211 G~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          211 GTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             CBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             CcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence            9876 3221             1246799999987   6676643

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.76  E-value=1.8e-06  Score=74.33  Aligned_cols=218  Identities=8%  Similarity=0.028  Sum_probs=132.0

Q ss_pred             CCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCC---ccccccc-eeEEecCCCe-eeccCC------CcEEEE
Q 021744           24 GGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPA---ATANGAA-AKRFANNTWG-RNNNFN------NHSNNY   92 (308)
Q Consensus        24 ~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~---~~gh~~~-~i~~s~~g~~-~s~~~d------~~i~vw   92 (308)
                      +...+++++..+..|.+.|..+..+.  |.++.... +..   ..|.... .+.++|+| . +++..+      +.|.+.
T Consensus        94 ~r~~l~v~~l~s~~I~viD~~t~p~~--p~~~k~ie-~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vl  169 (462)
T 2ece_A           94 ERRFLIVPGLRSSRIYIIDTKPNPRE--PKIIKVIE-PEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILML  169 (462)
T ss_dssp             CSCEEEEEBTTTCCEEEEECCSCTTS--CEEEEEEC-HHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEE
T ss_pred             cCCEEEEccCCCCeEEEEECCCCCCC--ceeeeeec-hhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEE
Confidence            34567788888999999998765322  11221110 000   0121122 57888999 6 555544      789999


Q ss_pred             ECCCCCCcccccceeeee--eeeeeeecCCceEEee--------------------CCCeEEEEEcCCCceeeeEeeCc-
Q 021744           93 RAGNSKNSNINNRAVIKT--DILCRNWVQGNCMYGE--------------------KCKFLHSWTVGDGFKLLTQLEGH-  149 (308)
Q Consensus        93 d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~--------------------~d~~i~iwd~~~~~~~~~~~~~h-  149 (308)
                      |.++.+.+..........  ...+.++|+++.+..+                    .+..|.+||+.++ +.+.++.-. 
T Consensus       170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-k~~~tI~vg~  248 (462)
T 2ece_A          170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-KRIHSLTLGE  248 (462)
T ss_dssp             CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-EEEEEEESCT
T ss_pred             ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-cEeeEEecCC
Confidence            998887665443221111  2336668888764433                    3789999999987 777777642 


Q ss_pred             -ccceEEEEE--eCCCCEEEEee------CCCcEEEEeCCCCeE--EEEEe--C-----------------CCeeE--EE
Q 021744          150 -QKVVSGITL--PSGSDKLYSGS------KDETVRVWDCASGQC--AGVIN--L-----------------GGEVG--CM  197 (308)
Q Consensus       150 -~~~v~~~~~--~~~~~~l~s~s------~dg~v~~wd~~~~~~--~~~~~--~-----------------~~~v~--~~  197 (308)
                       ......+.|  +|++++++.+.      .+++|.+|....++.  ++.+.  .                 .....  .+
T Consensus       249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l  328 (462)
T 2ece_A          249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI  328 (462)
T ss_dssp             TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred             CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence             134456655  99999886665      566888776654432  22221  0                 01112  24


Q ss_pred             EcCCCEEEEEc--CCcEEEEEcCCC---cee-eeeCC--------------CCCEEEEEEeCC--EEEEEc
Q 021744          198 ISEGPWIFIGV--TNFVKAWNTQTN---TDL-SLSGP--------------VGQVYAMAVGND--LLFAGT  246 (308)
Q Consensus       198 ~~~~~~l~~~~--d~~i~~wd~~~~---~~~-~~~~~--------------~~~v~~~~~~~~--~l~~g~  246 (308)
                      ++++++|.++.  .+.|.+||+...   +.+ .+...              ......+.++||  +|+++.
T Consensus       329 S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          329 SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            68999999776  779999998632   222 22211              013578999999  666666

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.75  E-value=1e-05  Score=64.13  Aligned_cols=174  Identities=13%  Similarity=0.053  Sum_probs=117.0

Q ss_pred             eeeeeeecCCce-EEeeCC--CeEEEEEcCCCceeeeEeeCcccc-eEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEE
Q 021744          111 DILCRNWVQGNC-MYGEKC--KFLHSWTVGDGFKLLTQLEGHQKV-VSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG  186 (308)
Q Consensus       111 ~~~~~~~~~~~~-~~g~~d--~~i~iwd~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~  186 (308)
                      ..-+.|.. +.. .+.+.+  ..|+.+|+.++ +.+..+.-.... -..+++.. ++.....-.++.+.++|.++.+.+.
T Consensus        23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tg-kv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~~~   99 (243)
T 3mbr_X           23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETG-RILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTPRA   99 (243)
T ss_dssp             EEEEEEET-TEEEEEECCTTSCEEEEEETTTC-CEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             cccEEEEC-CEEEEECCCCCCceEEEEECCCC-CEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcEEE
Confidence            34555655 444 565654  48999999999 677766533221 12344442 3334455568999999999999999


Q ss_pred             EEeCCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeC--CC---CCEEEEEEeCC-EEEEEcCCCeEEEEEcCC
Q 021744          187 VINLGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSG--PV---GQVYAMAVGND-LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       187 ~~~~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~--~~---~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~  258 (308)
                      ++.....-..++++++.|+++. ++.|.++|..+.+.. ++.-  +.   ..++.+.+... .++..-.+..|.+.|..+
T Consensus       100 ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~t  179 (243)
T 3mbr_X          100 RFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPAS  179 (243)
T ss_dssp             EEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTT
T ss_pred             EEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCC
Confidence            9996665567778877777665 789999999998876 3322  21   34567777755 455555677999999998


Q ss_pred             CCcccccceecc-------------ccCCCeEE-EEecCCCeEEEee
Q 021744          259 TTNCFEPAASLK-------------VHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       259 ~~~~~~~~~~~~-------------~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      +    +.+..+.             ......+. +++|+++.|++++
T Consensus       180 G----~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          180 G----KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             C----BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             C----CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            7    3333332             11234566 9999888887666

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.74  E-value=5.7e-06  Score=76.31  Aligned_cols=251  Identities=14%  Similarity=0.072  Sum_probs=141.5

Q ss_pred             CCceEEecCCCeEEEeecCCCCC-CCCCcccccCCCCCCccccccceeEEecCCCeeecc------CCCcEEEEECCCCC
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNR-FPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNN------FNNHSNNYRAGNSK   98 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~~s~~------~d~~i~vwd~~~~~   98 (308)
                      +..++.++.|+.|..+|+.+++. +.....     ........... ..+ .++..+.+.      .++.|..+|.++++
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~-----~~~~~~~~~~~-P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~  189 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTT-----DPAKPYSITGA-PRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGK  189 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECS-----CTTSSCBCCSC-CEE-ETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccC-----CCCCcceecCC-CEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCc
Confidence            45778888999999999988832 111100     00000000111 111 133333332      25889999998887


Q ss_pred             Ccccccce------------------------------eeeeeeeeeeecCCce-EEeeCCC------------------
Q 021744           99 NSNINNRA------------------------------VIKTDILCRNWVQGNC-MYGEKCK------------------  129 (308)
Q Consensus        99 ~~~~~~~~------------------------------~~~~~~~~~~~~~~~~-~~g~~d~------------------  129 (308)
                      .+-.....                              .........+.+.... +.+..++                  
T Consensus       190 ~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~  269 (668)
T 1kv9_A          190 LAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYL  269 (668)
T ss_dssp             EEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred             EEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceee
Confidence            54221100                              0000112345554433 4555444                  


Q ss_pred             -eEEEEEcCCCceeeeEeeC--cc-------cceEEEEEeCCCC---EEEEeeCCCcEEEEeCCCCeEEEEEeCCC----
Q 021744          130 -FLHSWTVGDGFKLLTQLEG--HQ-------KVVSGITLPSGSD---KLYSGSKDETVRVWDCASGQCAGVINLGG----  192 (308)
Q Consensus       130 -~i~iwd~~~~~~~~~~~~~--h~-------~~v~~~~~~~~~~---~l~s~s~dg~v~~wd~~~~~~~~~~~~~~----  192 (308)
                       .|..+|+.++ +.+..++.  |.       .+.....+..+++   .++.++.+|.++++|.++|+.+...+...    
T Consensus       270 ~~v~AlD~~tG-~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~  348 (668)
T 1kv9_A          270 SSILAIRPDTG-KLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA  348 (668)
T ss_dssp             TEEEEECTTTC-CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred             eeEEEEcCCCC-ceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccc
Confidence             4999999999 67666653  22       2233333334564   68999999999999999999885544211    


Q ss_pred             ---------ee--------------------------EEEEcCCCEEEEE------------------------------
Q 021744          193 ---------EV--------------------------GCMISEGPWIFIG------------------------------  207 (308)
Q Consensus       193 ---------~v--------------------------~~~~~~~~~l~~~------------------------------  207 (308)
                               ++                          .++.++..++++.                              
T Consensus       349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  428 (668)
T 1kv9_A          349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA  428 (668)
T ss_dssp             EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred             cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence                     00                          1223343444321                              


Q ss_pred             -------cCCcEEEEEcCCCcee-eeeCCCCCE-EEEEEeCCEEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE
Q 021744          208 -------VTNFVKAWNTQTNTDL-SLSGPVGQV-YAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA  278 (308)
Q Consensus       208 -------~d~~i~~wd~~~~~~~-~~~~~~~~v-~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~  278 (308)
                             .++.|..||+.+++.+ ....+.... ..+....++++.++.|+.++.||.+++    +.+..+.........
T Consensus       429 ~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG----~~l~~~~~~~~~~~~  504 (668)
T 1kv9_A          429 TDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKG----EALWQFEAQSGIVAA  504 (668)
T ss_dssp             CCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC----CEEEEEECSSCCCSC
T ss_pred             CCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcC----hhheEecCCCCcccC
Confidence                   1377999999999987 333222111 223333348888999999999999998    556666544332222


Q ss_pred             --EEecCCCeEE
Q 021744          279 --HFSRDVTSLL  288 (308)
Q Consensus       279 --~~s~d~~~l~  288 (308)
                        .+..+|+..+
T Consensus       505 p~~~~~~G~~yv  516 (668)
T 1kv9_A          505 PMTFELAGRQYV  516 (668)
T ss_dssp             CEEEEETTEEEE
T ss_pred             ceEEEECCEEEE
Confidence              4556776444

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.73  E-value=2.8e-06  Score=67.29  Aligned_cols=172  Identities=9%  Similarity=0.001  Sum_probs=110.9

Q ss_pred             eeEEecCCCe-eeccCC--CcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEee
Q 021744           71 AKRFANNTWG-RNNNFN--NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLE  147 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~  147 (308)
                      .+.|++ +.. .+.+.+  ..|+++|+++++............-..+....+..++..-.++.+.+||..+. +.+.++.
T Consensus        25 GL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl-~~~~ti~  102 (243)
T 3mbr_X           25 GLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATL-TPRARFR  102 (243)
T ss_dssp             EEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTT-EEEEEEE
T ss_pred             cEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcC-cEEEEEe
Confidence            578887 444 666665  48999999998765332111110011122222222355567899999999999 7888877


Q ss_pred             CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCC---Ce---eEEE-EcCCCEEEEEc-CCcEEEEEcCC
Q 021744          148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG---GE---VGCM-ISEGPWIFIGV-TNFVKAWNTQT  219 (308)
Q Consensus       148 ~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~---~~---v~~~-~~~~~~l~~~~-d~~i~~wd~~~  219 (308)
                      -. ..=..++  +++..|+.+..++.|.++|.++.+.+..+...   .+   +..+ +.++++.+... +..|.+.|.++
T Consensus       103 ~~-~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~t  179 (243)
T 3mbr_X          103 YP-GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPAS  179 (243)
T ss_dssp             CS-SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTT
T ss_pred             CC-CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCC
Confidence            43 2224444  45666666667889999999999998888732   22   2223 45676555443 77999999999


Q ss_pred             Ccee-eeeC-------------CCCCEEEEEEeCC---EEEEEcC
Q 021744          220 NTDL-SLSG-------------PVGQVYAMAVGND---LLFAGTQ  247 (308)
Q Consensus       220 ~~~~-~~~~-------------~~~~v~~~~~~~~---~l~~g~~  247 (308)
                      ++.. .+..             ..+..+.|+++|+   ++++|-.
T Consensus       180 G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          180 GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            9876 3221             1236799999997   6666644

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.70  E-value=6.9e-06  Score=75.75  Aligned_cols=190  Identities=12%  Similarity=0.069  Sum_probs=113.6

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCcc------ccccceeEEecCCCe-eeccCCCcEEEEECCCCC
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAAT------ANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSK   98 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~------gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~   98 (308)
                      +..++.++.++.|.-+|+.+++.     +.+..+......      ......+++  .+.. +.++.|+.|..+|.++++
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~  138 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKE-----LWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGK  138 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCE-----EEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCC
T ss_pred             CCEEEEECCCCeEEEEECCCChh-----ceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCC
Confidence            55677777889999999888732     111011000000      000012233  2345 778889999999999887


Q ss_pred             Ccccccceee---eeeeeeeeecCCceEEeeC------CCeEEEEEcCCCceeeeEeeCc---c----------------
Q 021744           99 NSNINNRAVI---KTDILCRNWVQGNCMYGEK------CKFLHSWTVGDGFKLLTQLEGH---Q----------------  150 (308)
Q Consensus        99 ~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~------d~~i~iwd~~~~~~~~~~~~~h---~----------------  150 (308)
                      .+-.......   ..+...-...++..+.+..      ++.|+.+|..++ +.+..+...   .                
T Consensus       139 ~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG-~~~W~~~~~~~~p~~~~~~~~~~~~~~~~  217 (668)
T 1kv9_A          139 AIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTG-KLAWRFYTVPGDPALPYEHPELREAAKTW  217 (668)
T ss_dssp             EEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC-CEEEEEESSCCCTTSCCSSHHHHHHHTTC
T ss_pred             EeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCC-cEEEEecccCCCCCccccccccccccccC
Confidence            5532211100   0011111112444444432      589999999999 666665421   0                


Q ss_pred             ------------cceEEEEEeCCCCEEEEeeCCC-------------------cEEEEeCCCCeEEEEEeCC--------
Q 021744          151 ------------KVVSGITLPSGSDKLYSGSKDE-------------------TVRVWDCASGQCAGVINLG--------  191 (308)
Q Consensus       151 ------------~~v~~~~~~~~~~~l~s~s~dg-------------------~v~~wd~~~~~~~~~~~~~--------  191 (308)
                                  .....++++|+..+++.++.++                   .|..+|.++++.+..++..        
T Consensus       218 ~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~  297 (668)
T 1kv9_A          218 QGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFT  297 (668)
T ss_dssp             CSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred             CccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccccc
Confidence                        0112468888888888887766                   3999999999999998732        


Q ss_pred             --CeeE--EEEcCCC---EEEEEc-CCcEEEEEcCCCcee
Q 021744          192 --GEVG--CMISEGP---WIFIGV-TNFVKAWNTQTNTDL  223 (308)
Q Consensus       192 --~~v~--~~~~~~~---~l~~~~-d~~i~~wd~~~~~~~  223 (308)
                        .+..  .+..+++   .++.+. +|.++++|.++++.+
T Consensus       298 ~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          298 ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence              1111  1234665   466665 899999999999876

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.70  E-value=1.7e-05  Score=71.75  Aligned_cols=156  Identities=13%  Similarity=0.123  Sum_probs=97.1

Q ss_pred             CeEEEEEcCCCceeeeEeeC--cc--------cceEEEEEeCCCC---EEEEeeCCCcEEEEeCCCCeEEEEEeCCC---
Q 021744          129 KFLHSWTVGDGFKLLTQLEG--HQ--------KVVSGITLPSGSD---KLYSGSKDETVRVWDCASGQCAGVINLGG---  192 (308)
Q Consensus       129 ~~i~iwd~~~~~~~~~~~~~--h~--------~~v~~~~~~~~~~---~l~s~s~dg~v~~wd~~~~~~~~~~~~~~---  192 (308)
                      +.|..+|..++ +.+..++.  |.        .++ -+....+++   .++.++.+|.+.+.|.++++.+..+....   
T Consensus       272 ~~v~Ald~~tG-~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~  349 (571)
T 2ad6_A          272 MTIWGRDLDTG-MAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVN  349 (571)
T ss_dssp             TEEEEEETTTC-CEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred             EEEEEEecCCC-cEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcc
Confidence            36999999999 66666653  21        122 122234664   57788999999999999999988776322   


Q ss_pred             -----------ee----------------------------EEEEcCCCEEEEE--------------------------
Q 021744          193 -----------EV----------------------------GCMISEGPWIFIG--------------------------  207 (308)
Q Consensus       193 -----------~v----------------------------~~~~~~~~~l~~~--------------------------  207 (308)
                                 ++                            .++.++..++++.                          
T Consensus       350 w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~  429 (571)
T 2ad6_A          350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL  429 (571)
T ss_dssp             SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             ccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence                       11                            1223444555442                          


Q ss_pred             ------------cCCcEEEEEcCCCcee-eeeCCCCCEEE--EEEeCCEEEEEcCCCeEEEEEcCCCCcccccceecccc
Q 021744          208 ------------VTNFVKAWNTQTNTDL-SLSGPVGQVYA--MAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVH  272 (308)
Q Consensus       208 ------------~d~~i~~wd~~~~~~~-~~~~~~~~v~~--~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  272 (308)
                                  .++.|..||+.+++.+ +... ...+.+  +......++.++.||.|+.+|.+++    +.+.++...
T Consensus       430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG----~~lw~~~~~  504 (571)
T 2ad6_A          430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDG----KELWNFKMP  504 (571)
T ss_dssp             EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTC----CEEEEEECS
T ss_pred             eeccCccccCCCCCCeEEEEECCCCCEEEEecC-CCCccceeEEECCCEEEEEcCCCeEEEEECCCC----CEEEEEeCC
Confidence                        1468999999999887 3332 222222  2222337777999999999999998    556555533


Q ss_pred             CCCeEE--EEecCCCeEEEee
Q 021744          273 TDSNRA--HFSRDVTSLLGSV  291 (308)
Q Consensus       273 ~~~v~~--~~s~d~~~l~~s~  291 (308)
                      ......  .+..+|+.++++.
T Consensus       505 ~~~~~~p~~~~~~G~~yv~~~  525 (571)
T 2ad6_A          505 SGGIGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             SCCCSCCEEEEETTEEEEEEE
T ss_pred             CCcEeeeEEEEECCEEEEEEE
Confidence            322222  4567887666443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.66  E-value=2.2e-06  Score=72.88  Aligned_cols=90  Identities=11%  Similarity=-0.076  Sum_probs=66.0

Q ss_pred             cEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEee----------CCCeEEEEEcCCCceeeeEeeCc-------
Q 021744           88 HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGE----------KCKFLHSWTVGDGFKLLTQLEGH-------  149 (308)
Q Consensus        88 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~----------~d~~i~iwd~~~~~~~~~~~~~h-------  149 (308)
                      +|.+.|.++.+.+.....+.  .. .+.++|++.. ..+.          .++.|.+||+.+. +.+.++...       
T Consensus        47 ~vsvID~~t~~v~~~i~vG~--~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~-~vv~~I~v~~~~~~~~  122 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAF--LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF-LPIADIELPDAPRFSV  122 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECT--TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC-CEEEEEEETTSCSCCB
T ss_pred             eEEEEECCCCeEEEEEeCCC--CC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC-CEEEEEECCCcccccc
Confidence            78899998887664333222  23 6899999966 2222          4789999999999 778877533       


Q ss_pred             ccceEEEEEeCCCCEEEEeeC--CCcEEE--EeCCC
Q 021744          150 QKVVSGITLPSGSDKLYSGSK--DETVRV--WDCAS  181 (308)
Q Consensus       150 ~~~v~~~~~~~~~~~l~s~s~--dg~v~~--wd~~~  181 (308)
                      ......++++||+++++.+..  +..|.+  +|+.+
T Consensus       123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            124578999999999988875  467888  99876

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.65  E-value=7.3e-06  Score=69.18  Aligned_cols=180  Identities=12%  Similarity=-0.054  Sum_probs=108.9

Q ss_pred             eeEEecCCCe-eeccC-----CCcEEEEECCCCCCcccccc-----eeeeeeeeeeeecC-Cce-EEee---CCCeEEEE
Q 021744           71 AKRFANNTWG-RNNNF-----NNHSNNYRAGNSKNSNINNR-----AVIKTDILCRNWVQ-GNC-MYGE---KCKFLHSW  134 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~-----d~~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~-~~g~---~d~~i~iw  134 (308)
                      .+++.++|.+ ++-..     +..|.+||+++++.......     .+......+.+.++ +.. ++..   .++.|.+|
T Consensus        71 gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~  150 (343)
T 2qe8_A           71 GIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV  150 (343)
T ss_dssp             EEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE
T ss_pred             EEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEE
Confidence            7999999988 54433     57899999987763321111     11122466777765 444 5554   67899999


Q ss_pred             EcCCCceeeeEeeCcc-----------------------------cceEEEEEeCCCCEEEEeeCCC-cEEEEeCC---C
Q 021744          135 TVGDGFKLLTQLEGHQ-----------------------------KVVSGITLPSGSDKLYSGSKDE-TVRVWDCA---S  181 (308)
Q Consensus       135 d~~~~~~~~~~~~~h~-----------------------------~~v~~~~~~~~~~~l~s~s~dg-~v~~wd~~---~  181 (308)
                      |+.++ +..+.+.+|.                             ..+..++|+|+++.|+.+..++ .+..++..   .
T Consensus       151 d~~~g-~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~  229 (343)
T 2qe8_A          151 DLQTG-LAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSN  229 (343)
T ss_dssp             ETTTC-CEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTC
T ss_pred             ECCCC-CEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcC
Confidence            99877 4554443321                             2357899999999888877766 44444421   1


Q ss_pred             Ce--------EEEEEeCCCe--eEEEEcCCCEEEEEc-CCcEEEEEcCCCceeeeeCC--CCCEEEEEEeCC--EEEEEc
Q 021744          182 GQ--------CAGVINLGGE--VGCMISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGP--VGQVYAMAVGND--LLFAGT  246 (308)
Q Consensus       182 ~~--------~~~~~~~~~~--v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~--~~~v~~~~~~~~--~l~~g~  246 (308)
                      +.        .+........  -.++.+++.++++.. ++.|.+||..+++...+...  ...+.++++.++  ++++.+
T Consensus       230 ~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          230 LQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             TTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred             CCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence            10        0111111111  134457788777766 78999999866665433322  356889999887  555555


Q ss_pred             CCCeE
Q 021744          247 QDGAI  251 (308)
Q Consensus       247 ~dg~i  251 (308)
                      ..+.+
T Consensus       310 ~~~~~  314 (343)
T 2qe8_A          310 QLHHS  314 (343)
T ss_dssp             CGGGS
T ss_pred             ccccc
Confidence            44333

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.60  E-value=6.5e-05  Score=68.11  Aligned_cols=153  Identities=17%  Similarity=0.170  Sum_probs=94.0

Q ss_pred             CeEEEEEcCCCceeeeEeeCcc----------cceEEEEEe-CCC---CEEEEeeCCCcEEEEeCCCCeEEEEEeCCC--
Q 021744          129 KFLHSWTVGDGFKLLTQLEGHQ----------KVVSGITLP-SGS---DKLYSGSKDETVRVWDCASGQCAGVINLGG--  192 (308)
Q Consensus       129 ~~i~iwd~~~~~~~~~~~~~h~----------~~v~~~~~~-~~~---~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~--  192 (308)
                      +.|..+|++++ +.+..++...          .++. +... .++   ..++.++.+|.+.+.|.++++.+.......  
T Consensus       278 ~sv~Ald~~TG-~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~  355 (599)
T 1w6s_A          278 MTIFGRDADTG-EAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTV  355 (599)
T ss_dssp             SEEEEEETTTC-CEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred             ceEEEEeCCCC-ceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCc
Confidence            47999999999 6666665322          1121 2222 466   467788999999999999999988776221  


Q ss_pred             ------------ee----------------------------EEEEcCCCEEEEE-------------------------
Q 021744          193 ------------EV----------------------------GCMISEGPWIFIG-------------------------  207 (308)
Q Consensus       193 ------------~v----------------------------~~~~~~~~~l~~~-------------------------  207 (308)
                                  ++                            .++.++..++++.                         
T Consensus       356 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~  435 (599)
T 1w6s_A          356 NVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGAT  435 (599)
T ss_dssp             CSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred             ccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceeccc
Confidence                        10                            0122222332221                         


Q ss_pred             ---------------cCCcEEEEEcCCCcee-eeeCCCCCEE-E-EEEeCCEEEEEcCCCeEEEEEcCCCCcccccceec
Q 021744          208 ---------------VTNFVKAWNTQTNTDL-SLSGPVGQVY-A-MAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASL  269 (308)
Q Consensus       208 ---------------~d~~i~~wd~~~~~~~-~~~~~~~~v~-~-~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~  269 (308)
                                     ..+.|..||+.+++.+ .... ..+.. . +.....+++.++.|+.++.||.+++    +.+.++
T Consensus       436 ~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG----~~lW~~  510 (599)
T 1w6s_A          436 LNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTG----DLLWKF  510 (599)
T ss_dssp             EEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTC----CEEEEE
T ss_pred             ceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCC----CEEEEe
Confidence                           2368899999999887 3321 11221 1 3333347777999999999999998    555555


Q ss_pred             cccCCCeEE--EEecCCCeEE
Q 021744          270 KVHTDSNRA--HFSRDVTSLL  288 (308)
Q Consensus       270 ~~~~~~v~~--~~s~d~~~l~  288 (308)
                      +.....+..  .|..+|+..+
T Consensus       511 ~l~~g~~~~P~~y~~~G~qyv  531 (599)
T 1w6s_A          511 KIPSGAIGYPMTYTHKGTQYV  531 (599)
T ss_dssp             ECSSCCCSCCEEEEETTEEEE
T ss_pred             eCCCCcEeccEEEEeCCEEEE
Confidence            433332222  5667887544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.59  E-value=9.6e-05  Score=66.93  Aligned_cols=154  Identities=12%  Similarity=0.161  Sum_probs=96.2

Q ss_pred             CeEEEEEcCCCceeeeEeeC--cc--------cceEEEEEe-CCCC---EEEEeeCCCcEEEEeCCCCeEEEEEeCCCe-
Q 021744          129 KFLHSWTVGDGFKLLTQLEG--HQ--------KVVSGITLP-SGSD---KLYSGSKDETVRVWDCASGQCAGVINLGGE-  193 (308)
Q Consensus       129 ~~i~iwd~~~~~~~~~~~~~--h~--------~~v~~~~~~-~~~~---~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~-  193 (308)
                      +.|..+|+.++ +.+..++.  |.        .++. +... .+++   .++.++.+|.++++|.++++.+..+..... 
T Consensus       291 ~~v~AlD~~TG-~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~  368 (582)
T 1flg_A          291 SGQVGVDPSSG-EVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNI  368 (582)
T ss_dssp             SEEEEECTTTC-CEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCC
T ss_pred             ceEEEEeCCCC-CEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCc
Confidence            68999999999 66666643  21        1221 2222 4664   688899999999999999999887763220 


Q ss_pred             -------------e-------------------E---------------EEEcCCCEEEEE-------------------
Q 021744          194 -------------V-------------------G---------------CMISEGPWIFIG-------------------  207 (308)
Q Consensus       194 -------------v-------------------~---------------~~~~~~~~l~~~-------------------  207 (308)
                                   +                   .               ++.++..++++.                   
T Consensus       369 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~  448 (582)
T 1flg_A          369 TWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGS  448 (582)
T ss_dssp             CSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTS
T ss_pred             cccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCC
Confidence                         0                   0               011122233221                   


Q ss_pred             ---------------cCCcEEEEEcCCCcee-eeeCCCCCEE--EEEEeCCEEEEEcCCCeEEEEEcCCCCcccccceec
Q 021744          208 ---------------VTNFVKAWNTQTNTDL-SLSGPVGQVY--AMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASL  269 (308)
Q Consensus       208 ---------------~d~~i~~wd~~~~~~~-~~~~~~~~v~--~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~  269 (308)
                                     .++.|..||+.+++.+ +..... ++.  .+.....+++.++.||.++.||.+++    +.+.++
T Consensus       449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG----~~lW~~  523 (582)
T 1flg_A          449 AYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSG----KELWKF  523 (582)
T ss_dssp             CCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTC----CEEEEE
T ss_pred             ceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCC----CEEEEe
Confidence                           1468999999999887 333221 221  12233337778999999999999998    566666


Q ss_pred             cccCCCeEE--EEecCCCeEEE
Q 021744          270 KVHTDSNRA--HFSRDVTSLLG  289 (308)
Q Consensus       270 ~~~~~~v~~--~~s~d~~~l~~  289 (308)
                      +........  .|..+|+..++
T Consensus       524 ~~~~g~~a~P~~y~~~G~qYv~  545 (582)
T 1flg_A          524 QTGSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             ECSSCCCSCCEEEEETTEEEEE
T ss_pred             cCCCCcccCceEEEECCEEEEE
Confidence            544333332  56788875553

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.58  E-value=0.00015  Score=58.64  Aligned_cols=208  Identities=8%  Similarity=-0.012  Sum_probs=125.4

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC-ce-EEeeCCCeEEEEEcCCCceeeeEe
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG-NC-MYGEKCKFLHSWTVGDGFKLLTQL  146 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~d~~i~iwd~~~~~~~~~~~  146 (308)
                      .+++.|++..  ++-..++.|..++++...... ...........+.+.+++ .. ++....+.|.++++... ......
T Consensus        40 gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~-~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~  117 (267)
T 1npe_A           40 GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-IIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT-QRRVLF  117 (267)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-EECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEE
T ss_pred             EEEEecCCCEEEEEECCCCEEEEEecCCCCcEE-EEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC-CEEEEE
Confidence            6899997655  666677899999986553211 110111235667777754 44 55556789999998754 222222


Q ss_pred             eCcccceEEEEEeCCCCEEEEeeC---CCcEEEEeCCCCeEEEEEe---CCCeeE-EEEcCCCEEEEEc--CCcEEEEEc
Q 021744          147 EGHQKVVSGITLPSGSDKLYSGSK---DETVRVWDCASGQCAGVIN---LGGEVG-CMISEGPWIFIGV--TNFVKAWNT  217 (308)
Q Consensus       147 ~~h~~~v~~~~~~~~~~~l~s~s~---dg~v~~wd~~~~~~~~~~~---~~~~v~-~~~~~~~~l~~~~--d~~i~~wd~  217 (308)
                      .........++++|++..|+.+..   .+.|..+++... ....+.   ...+.. ++.+++..|+.+.  .+.|.++|+
T Consensus       118 ~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~  196 (267)
T 1npe_A          118 DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP  196 (267)
T ss_dssp             CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEec
Confidence            222246789999997666554443   368888887643 233332   112222 3356677666544  679999999


Q ss_pred             CCCceeeeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccC-CCeEE-EEecCCC
Q 021744          218 QTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT-DSNRA-HFSRDVT  285 (308)
Q Consensus       218 ~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~v~~-~~s~d~~  285 (308)
                      .......+.........+++..+ ++++....+.|..+|..++    +.+..+.... ..... ++.|++.
T Consensus       197 ~g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g----~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          197 AQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS----KEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTT----EEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CCCceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCC----CceEEEccccccccceeeecCccC
Confidence            86554433222344567877766 5556666789999999876    5556655332 12333 6777754

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.52  E-value=9.2e-05  Score=59.88  Aligned_cols=203  Identities=9%  Similarity=-0.007  Sum_probs=120.2

Q ss_pred             CCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe--eeccCCCcEEEEECCCCCCc
Q 021744           24 GGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG--RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        24 ~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~  100 (308)
                      +.+.++++...++.|..++......   ..+   .+     .+...+ .+++.|++..  ++-...+.|.+++++.....
T Consensus        46 ~~~~ly~~d~~~~~I~~~~~~g~~~---~~~---~~-----~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~  114 (267)
T 1npe_A           46 VDKVVYWTDISEPSIGRASLHGGEP---TTI---IR-----QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR  114 (267)
T ss_dssp             TTTEEEEEETTTTEEEEEESSSCCC---EEE---EC-----TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CCCEEEEEECCCCEEEEEecCCCCc---EEE---EE-----CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE
Confidence            4456777777788999998765411   000   00     011122 7899997654  66667788999998643211


Q ss_pred             ccccceeeeeeeeeeeecC-Cce-EEeeC--CCeEEEEEcCCCceeeeEee-CcccceEEEEEeCCCCEE-EEeeCCCcE
Q 021744          101 NINNRAVIKTDILCRNWVQ-GNC-MYGEK--CKFLHSWTVGDGFKLLTQLE-GHQKVVSGITLPSGSDKL-YSGSKDETV  174 (308)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~-~~~-~~g~~--d~~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l-~s~s~dg~v  174 (308)
                       ............+.+.++ +.. ++...  .+.|..+++... . ...+. ..-.....+++++++..| ++-...+.|
T Consensus       115 -~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I  191 (267)
T 1npe_A          115 -VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-N-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRA  191 (267)
T ss_dssp             -EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-C-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             -EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-C-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEE
Confidence             111111123566788885 444 33322  468888887644 2 22222 233467899999987666 455566899


Q ss_pred             EEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEc--CCcEEEEEcCCCcee-eeeCCC-CCEEEEEEeCC
Q 021744          175 RVWDCASGQCAGVINLGGEVGCMISEGPWIFIGV--TNFVKAWNTQTNTDL-SLSGPV-GQVYAMAVGND  240 (308)
Q Consensus       175 ~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~--d~~i~~wd~~~~~~~-~~~~~~-~~v~~~~~~~~  240 (308)
                      ..+|+........+........+..++..|+++.  ++.|..+|..+++.. .+.... .....+++.|+
T Consensus       192 ~~~~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          192 ECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (267)
T ss_dssp             EEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             EEEecCCCceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence            9999986544433332222334444556666443  679999999988876 443222 24667777776

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.50  E-value=0.0008  Score=63.35  Aligned_cols=218  Identities=11%  Similarity=0.067  Sum_probs=135.9

Q ss_pred             eeEEecCCCeeeccCCCcEEEEECCCCCCccccc-----ceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeE
Q 021744           71 AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINN-----RAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQ  145 (308)
Q Consensus        71 ~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~  145 (308)
                      ++...++|..-.|+.++-|..|+..+.+......     ......+.++....++..-.|..++-|..|+..++ +.. .
T Consensus       314 ~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~-~~~-~  391 (795)
T 4a2l_A          314 SIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQ-RFT-S  391 (795)
T ss_dssp             EEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTC-CEE-E
T ss_pred             EEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCC-cEE-E
Confidence            6777788888556666668888875432211000     11122366777777788878888888999998876 222 2


Q ss_pred             ee-C--------cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC------CCeeEEEE--cCCCEEEEEc
Q 021744          146 LE-G--------HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL------GGEVGCMI--SEGPWIFIGV  208 (308)
Q Consensus       146 ~~-~--------h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~------~~~v~~~~--~~~~~l~~~~  208 (308)
                      +. .        ....|.++..++++..|..|+.++-+.++|.++++... +..      ...+.++.  +++.+.+.+.
T Consensus       392 ~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~~~~l~~~~v~~i~~d~~g~lwigt~  470 (795)
T 4a2l_A          392 YTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-FNQRNSQLVNENVYAILPDGEGNLWLGTL  470 (795)
T ss_dssp             ECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-ECTTTSCCSCSCEEEEEECSSSCEEEEES
T ss_pred             EecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-eecCCCCcCCCeeEEEEECCCCCEEEEec
Confidence            21 1        23578999998888756667777779999998876433 321      24566664  3466555554


Q ss_pred             CCcEEEEEcCCCceeeeeC-------CCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCccccc-ce---e-ccccCCC
Q 021744          209 TNFVKAWNTQTNTDLSLSG-------PVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEP-AA---S-LKVHTDS  275 (308)
Q Consensus       209 d~~i~~wd~~~~~~~~~~~-------~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~-~~---~-~~~~~~~  275 (308)
                       +-+.+||..+++...+..       ....|.++...++ .+..|+. +-|..||..+.    +. ..   . -......
T Consensus       471 -~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~----~~~~~~~~~~~~l~~~~  544 (795)
T 4a2l_A          471 -SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGL----DIQKASILPVSNVTKLF  544 (795)
T ss_dssp             -SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETT----EEEECCCSCSCGGGGSC
T ss_pred             -CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCC----eEEEecCCCCCCCCCCe
Confidence             668999998876653321       2357899988887 5555555 56888887764    21 00   0 0112345


Q ss_pred             eEE-EEecCCCeEEEeeceEEEEe
Q 021744          276 NRA-HFSRDVTSLLGSVSFIMFIG  298 (308)
Q Consensus       276 v~~-~~s~d~~~l~~s~s~~i~~~  298 (308)
                      |.+ ...++|.+.+++.. .|+..
T Consensus       545 i~~i~~d~~g~lWigT~~-Gl~~~  567 (795)
T 4a2l_A          545 TNCIYEASNGIIWVGTRE-GFYCF  567 (795)
T ss_dssp             EEEEEECTTSCEEEEESS-CEEEE
T ss_pred             eEEEEECCCCCEEEEeCC-CceeE
Confidence            666 66778876665543 34443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.47  E-value=0.00026  Score=64.02  Aligned_cols=190  Identities=9%  Similarity=-0.034  Sum_probs=107.7

Q ss_pred             CCceEEecC-CCeEEEeec-CCCCC-CCCCcccccCCCCCCcc----ccc-cceeEEecCCCe-eeccCCCcEEEEECCC
Q 021744           26 GGLSTADTR-QKVCNYWRA-GKCNR-FPCPYLHRELPLPPAAT----ANG-AAAKRFANNTWG-RNNNFNNHSNNYRAGN   96 (308)
Q Consensus        26 ~~~~~s~s~-d~~i~~W~~-~~~~~-~~~~~~~~~~~~~~~~~----gh~-~~~i~~s~~g~~-~s~~~d~~i~vwd~~~   96 (308)
                      +..+..++. ++.|.-.|+ .+++. +....     +......    .+. ...+++  .+.. +.++.|+.|..+|..+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~t  134 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKP-----KQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKT  134 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECC-----CCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcC-----CCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCC
Confidence            445556666 888999998 77731 11100     0000000    000 001233  2445 7777899999999988


Q ss_pred             CCCccccccee-ee--eeeeeeeecCCceEEeeC------CCeEEEEEcCCCceeeeEeeCcccc---------------
Q 021744           97 SKNSNINNRAV-IK--TDILCRNWVQGNCMYGEK------CKFLHSWTVGDGFKLLTQLEGHQKV---------------  152 (308)
Q Consensus        97 ~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~g~~------d~~i~iwd~~~~~~~~~~~~~h~~~---------------  152 (308)
                      ++.+-...... ..  .+...-...++..+.+..      ++.|+.+|..++ +.+..+......               
T Consensus       135 G~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG-~~~W~~~~~~~~~~~~~~p~~~~~~~~  213 (571)
T 2ad6_A          135 GKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTG-ELKWRAFATGSDDSVRLAKDFNSANPH  213 (571)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTC-CEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCC-cEEEEEccCCCccccccCccccccccc
Confidence            87653211110 00  111111112455555544      789999999999 666655432110               


Q ss_pred             ----------------------e-EEEEEeCCCCEEEEeeCC----------------CcEEEEeCCCCeEEEEEeCC--
Q 021744          153 ----------------------V-SGITLPSGSDKLYSGSKD----------------ETVRVWDCASGQCAGVINLG--  191 (308)
Q Consensus       153 ----------------------v-~~~~~~~~~~~l~s~s~d----------------g~v~~wd~~~~~~~~~~~~~--  191 (308)
                                            + ..++++++...++.+..+                +.|..+|.++++.+..++..  
T Consensus       214 ~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~  293 (571)
T 2ad6_A          214 YGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPH  293 (571)
T ss_dssp             GCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTT
T ss_pred             ccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCC
Confidence                                  0 235677766677665532                35999999999999988732  


Q ss_pred             ---------CeeE-EEEcCCC---EEEEEc-CCcEEEEEcCCCcee
Q 021744          192 ---------GEVG-CMISEGP---WIFIGV-TNFVKAWNTQTNTDL  223 (308)
Q Consensus       192 ---------~~v~-~~~~~~~---~l~~~~-d~~i~~wd~~~~~~~  223 (308)
                               .++. ....+++   .++.+. +|.+.++|..+++.+
T Consensus       294 d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~  339 (571)
T 2ad6_A          294 DEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI  339 (571)
T ss_dssp             CSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEE
Confidence                     1111 1123664   455565 889999999999877

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.44  E-value=1.2e-05  Score=74.03  Aligned_cols=217  Identities=10%  Similarity=-0.013  Sum_probs=116.7

Q ss_pred             eeEEecCCCe-eeccC-CCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEee-CC-----CeEEEEEcCCCce
Q 021744           71 AKRFANNTWG-RNNNF-NNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGE-KC-----KFLHSWTVGDGFK  141 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~-~d-----~~i~iwd~~~~~~  141 (308)
                      .+++.+++.. +.|+. +..+.+||..+.+............-..+...+++.+ +.|+ .+     ..+.+||+.+. +
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~-~  325 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK-T  325 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT-E
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC-c
Confidence            3677889998 88874 5689999987654322111111111233445556665 7777 34     57899999876 2


Q ss_pred             eeeEeeC-----cccceEEEEEeCCCCEEEEeeCC---------CcEEEEeCCCCeEEEEEeCCC----------eeEEE
Q 021744          142 LLTQLEG-----HQKVVSGITLPSGSDKLYSGSKD---------ETVRVWDCASGQCAGVINLGG----------EVGCM  197 (308)
Q Consensus       142 ~~~~~~~-----h~~~v~~~~~~~~~~~l~s~s~d---------g~v~~wd~~~~~~~~~~~~~~----------~v~~~  197 (308)
                      - ..+..     ....-....+..++...+.++.+         ..+..||..+.+.........          ...++
T Consensus       326 W-~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av  404 (656)
T 1k3i_A          326 W-TSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV  404 (656)
T ss_dssp             E-EEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred             c-eeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence            2 22210     00000001122344444444444         456788988776443332111          11222


Q ss_pred             -E--cCCCEEEEEc-CC-----------cEEEEEcCCCceeeee---CCCCCE-EEEEEeCC--EEEEEcCC--------
Q 021744          198 -I--SEGPWIFIGV-TN-----------FVKAWNTQTNTDLSLS---GPVGQV-YAMAVGND--LLFAGTQD--------  248 (308)
Q Consensus       198 -~--~~~~~l~~~~-d~-----------~i~~wd~~~~~~~~~~---~~~~~v-~~~~~~~~--~l~~g~~d--------  248 (308)
                       .  .++++++.|. ++           .+.+||..+.+.....   .+.... .+++..|+  +++.|+.+        
T Consensus       405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~  484 (656)
T 1k3i_A          405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS  484 (656)
T ss_dssp             EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred             eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCC
Confidence             2  3677777765 22           5778888877655332   222222 34455555  77777754        


Q ss_pred             ---CeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          249 ---GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       249 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                         ..+.+||..+.+  ++.+..+........+ .+.+|+++++.++
T Consensus       485 ~~~~~v~~ydp~t~~--W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG  529 (656)
T 1k3i_A          485 TPVFTPEIYVPEQDT--FYKQNPNSIVRVYHSISLLLPDGRVFNGGG  529 (656)
T ss_dssp             SBCCCCEEEEGGGTE--EEECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred             CcccceEEEcCCCCc--eeecCCCCCccccccHhhcCCCcEEEecCC
Confidence               468999988753  2444433333333344 6678999887554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.41  E-value=0.00061  Score=61.79  Aligned_cols=197  Identities=9%  Similarity=-0.008  Sum_probs=112.1

Q ss_pred             CCceEEecC-CCeEEEeec-CCCCC-CCCCcccccCCCCCCccccccceeEEec-CCC----eeeccCCCcEEEEECCCC
Q 021744           26 GGLSTADTR-QKVCNYWRA-GKCNR-FPCPYLHRELPLPPAATANGAAAKRFAN-NTW----GRNNNFNNHSNNYRAGNS   97 (308)
Q Consensus        26 ~~~~~s~s~-d~~i~~W~~-~~~~~-~~~~~~~~~~~~~~~~~gh~~~~i~~s~-~g~----~~s~~~d~~i~vwd~~~~   97 (308)
                      +..+..++. ++.|.-.|+ .+++. +...........+..........++++| ++.    .+.++.|+.|..+|..++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            455666666 888999998 77732 1111000000000000000011356653 444    467778999999999888


Q ss_pred             CCccccccee-ee--eeeeeeeecCCceEEee------CCCeEEEEEcCCCceeeeEeeCcccc----------------
Q 021744           98 KNSNINNRAV-IK--TDILCRNWVQGNCMYGE------KCKFLHSWTVGDGFKLLTQLEGHQKV----------------  152 (308)
Q Consensus        98 ~~~~~~~~~~-~~--~~~~~~~~~~~~~~~g~------~d~~i~iwd~~~~~~~~~~~~~h~~~----------------  152 (308)
                      +.+-...... ..  .+...-...++..+.++      .++.|+.+|.+++ +.+..+......                
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG-~~~W~~~~~~~~~~~~~~p~~~~~~~~~  220 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTG-EQVWRAYATGPDKDLLLASDFNIKNPHY  220 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTC-CEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred             CEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCC-cEEEEEcCCCCccccccccccccccccc
Confidence            7653211110 00  11111111245555554      3799999999999 666655432111                


Q ss_pred             ---------------------e-EEEEEeCCCCEEEEeeCC----------------CcEEEEeCCCCeEEEEEeCCC--
Q 021744          153 ---------------------V-SGITLPSGSDKLYSGSKD----------------ETVRVWDCASGQCAGVINLGG--  192 (308)
Q Consensus       153 ---------------------v-~~~~~~~~~~~l~s~s~d----------------g~v~~wd~~~~~~~~~~~~~~--  192 (308)
                                           + ..+++.++..+++.+..+                ..|..+|.++++.+..++...  
T Consensus       221 g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d  300 (599)
T 1w6s_A          221 GQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHD  300 (599)
T ss_dssp             CCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTC
T ss_pred             cccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCc
Confidence                                 0 135667777777777655                389999999999999888321  


Q ss_pred             ---------eeEEEE--cCC---CEEEEEc-CCcEEEEEcCCCcee
Q 021744          193 ---------EVGCMI--SEG---PWIFIGV-TNFVKAWNTQTNTDL  223 (308)
Q Consensus       193 ---------~v~~~~--~~~---~~l~~~~-d~~i~~wd~~~~~~~  223 (308)
                               ++..-.  .++   +.++.+. +|.+.++|.++++.+
T Consensus       301 ~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  346 (599)
T 1w6s_A          301 EWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV  346 (599)
T ss_dssp             SSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence                     121111  456   3555555 899999999999877

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.40  E-value=0.0005  Score=56.80  Aligned_cols=213  Identities=12%  Similarity=0.009  Sum_probs=122.8

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEee--CCC-eEEEEEcCCCceeeeEe
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGE--KCK-FLHSWTVGDGFKLLTQL  146 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~d~-~i~iwd~~~~~~~~~~~  146 (308)
                      .++++++|.. ++-..++.|..||.+... .  ........+..+.+.+++..+.+.  .++ .|..++..++ +.....
T Consensus        36 gia~~~~g~lyv~d~~~~~I~~~d~~g~~-~--~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g-~~~~~~  111 (306)
T 2p4o_A           36 NLASAPDGTIFVTNHEVGEIVSITPDGNQ-Q--IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG-TVETLL  111 (306)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTCCE-E--EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS-CEEEEE
T ss_pred             eEEECCCCCEEEEeCCCCeEEEECCCCce-E--EEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC-eEEEEE
Confidence            6899999988 777788899999876431 1  111112346677888888774443  222 4667777776 332211


Q ss_pred             e-CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeE-EEEEe----------CCCeeEEEEcCCCEEEEEc--CCcE
Q 021744          147 E-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC-AGVIN----------LGGEVGCMISEGPWIFIGV--TNFV  212 (308)
Q Consensus       147 ~-~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~-~~~~~----------~~~~v~~~~~~~~~l~~~~--d~~i  212 (308)
                      . ........++..+++..+++-..++.|..+|..+++. +....          .-.....+.++++.|+++.  .+.|
T Consensus       112 ~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I  191 (306)
T 2p4o_A          112 TLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLL  191 (306)
T ss_dssp             ECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEE
T ss_pred             eCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEE
Confidence            1 1122334555555554455555688999999876532 21111          0012233477787776554  6799


Q ss_pred             EEEEcCC-Ccee---eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEe---c
Q 021744          213 KAWNTQT-NTDL---SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFS---R  282 (308)
Q Consensus       213 ~~wd~~~-~~~~---~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s---~  282 (308)
                      ..||+.. ++..   .+.. ......++++++  ++++....+.|.++|.. ++.  ..+..+........+ +|.   |
T Consensus       192 ~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~--~~~~~~~~~~~~p~~~a~~g~~~  267 (306)
T 2p4o_A          192 LRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST--TIIAQAEQGVIGSTAVAFGQTEG  267 (306)
T ss_dssp             EEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE--EEEECGGGTCTTEEEEEECCSTT
T ss_pred             EEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE--EEEeecccccCCceEEEEecccC
Confidence            9999875 3221   1111 134566888888  55555567889999865 311  112233333344555 998   8


Q ss_pred             CCCeEEEee
Q 021744          283 DVTSLLGSV  291 (308)
Q Consensus       283 d~~~l~~s~  291 (308)
                      |++.|+++.
T Consensus       268 d~~~LyVt~  276 (306)
T 2p4o_A          268 DCTAIYVVT  276 (306)
T ss_dssp             TTTEEEEEE
T ss_pred             CCCEEEEEC
Confidence            877776443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.40  E-value=0.00032  Score=58.34  Aligned_cols=211  Identities=10%  Similarity=0.063  Sum_probs=122.0

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCccccc------------------ceeeeeeeeeeeec-CCceEEeeCCCe
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN------------------RAVIKTDILCRNWV-QGNCMYGEKCKF  130 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~------------------~~~~~~~~~~~~~~-~~~~~~g~~d~~  130 (308)
                      .+++.++|.. .++..++.|..||..+++......                  ......+..+.+.+ ++.++.+...+.
T Consensus        23 ~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~  102 (322)
T 2fp8_A           23 SFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYH  102 (322)
T ss_dssp             CEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTE
T ss_pred             EEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCC
Confidence            5899999986 778888999999886543211000                  00012355677776 677765655566


Q ss_pred             EEEEEcCCCceeeeEeeCc-----ccceEEEEEeC-CCCEEEEeeC-----------------CCcEEEEeCCCCeEEEE
Q 021744          131 LHSWTVGDGFKLLTQLEGH-----QKVVSGITLPS-GSDKLYSGSK-----------------DETVRVWDCASGQCAGV  187 (308)
Q Consensus       131 i~iwd~~~~~~~~~~~~~h-----~~~v~~~~~~~-~~~~l~s~s~-----------------dg~v~~wd~~~~~~~~~  187 (308)
                      |..+|..++ + +..+...     ......+++.+ ++...++-..                 ++.|..+|..+++....
T Consensus       103 i~~~d~~~g-~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  180 (322)
T 2fp8_A          103 LSVVGSEGG-H-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL  180 (322)
T ss_dssp             EEEECTTCE-E-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCC-E-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence            888887755 2 2222211     13467899999 8877665432                 36788999887765433


Q ss_pred             Ee-CCCe-eEEEEcCCCEEEEE-c-CCcEEEEEcCCC---ceeeeeCCCCCEEEEEEeCC--EEEEEcC----------C
Q 021744          188 IN-LGGE-VGCMISEGPWIFIG-V-TNFVKAWNTQTN---TDLSLSGPVGQVYAMAVGND--LLFAGTQ----------D  248 (308)
Q Consensus       188 ~~-~~~~-v~~~~~~~~~l~~~-~-d~~i~~wd~~~~---~~~~~~~~~~~v~~~~~~~~--~l~~g~~----------d  248 (308)
                      .. ...+ -.++.+++++|+++ . .+.|..|++...   ....+..... ...+++.++  ++++...          .
T Consensus       181 ~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~  259 (322)
T 2fp8_A          181 LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVD  259 (322)
T ss_dssp             EEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEE
T ss_pred             ccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCc
Confidence            22 1122 22456788866655 3 679999998753   2222222223 788999988  3333322          3


Q ss_pred             CeEEEEEcCCCCcccccceeccccC----CCeEE-EEecCCCeEEEe
Q 021744          249 GAILAWKFNVTTNCFEPAASLKVHT----DSNRA-HFSRDVTSLLGS  290 (308)
Q Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~~~----~~v~~-~~s~d~~~l~~s  290 (308)
                      +.|..+|.. +    +.+..+....    ..+.. ++ .++++.+++
T Consensus       260 ~~v~~~d~~-G----~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~  300 (322)
T 2fp8_A          260 PKGIKFDEF-G----NILEVIPLPPPFAGEHFEQIQE-HDGLLYIGT  300 (322)
T ss_dssp             EEEEEECTT-S----CEEEEEECCTTTTTSCCCEEEE-ETTEEEEEC
T ss_pred             cEEEEECCC-C----CEEEEEECCCCCccccceEEEE-eCCEEEEee
Confidence            567777754 2    4444443221    23444 44 455555543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.35  E-value=0.002  Score=60.64  Aligned_cols=213  Identities=6%  Similarity=-0.064  Sum_probs=130.3

Q ss_pred             eeEEecCCCeeeccCCCcEEEEECCCCCCcccccc-------eeeeeeeeeeeecCCc-eEEeeCCCeEEEEEcCCCcee
Q 021744           71 AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNR-------AVIKTDILCRNWVQGN-CMYGEKCKFLHSWTVGDGFKL  142 (308)
Q Consensus        71 ~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~g~~d~~i~iwd~~~~~~~  142 (308)
                      ++...++|..-.|+.++-|..|+..+++.......       .....+.++....++. +..|..++-|.++|..++ +.
T Consensus       361 ~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~-~~  439 (795)
T 4a2l_A          361 CIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG-QV  439 (795)
T ss_dssp             EEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC-CE
T ss_pred             EEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC-cE
Confidence            56667778775567776699999876543211110       0123366677777888 777888788999999877 32


Q ss_pred             eeEee-----CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC-------CCeeEEEE--cCCCEEEEEc
Q 021744          143 LTQLE-----GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-------GGEVGCMI--SEGPWIFIGV  208 (308)
Q Consensus       143 ~~~~~-----~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~-------~~~v~~~~--~~~~~l~~~~  208 (308)
                       ..+.     .....|.++...+++.+.+.. .+ -+.+||.++++.......       ...+.++.  +++++.+.+.
T Consensus       440 -~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~  516 (795)
T 4a2l_A          440 -ENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE  516 (795)
T ss_dssp             -EEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES
T ss_pred             -EEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC
Confidence             2332     134578999988888755544 44 488999887754332211       23456664  4566655555


Q ss_pred             CCcEEEEEcCCCceeeee-------CCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccc-cCCCeEE-
Q 021744          209 TNFVKAWNTQTNTDLSLS-------GPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKV-HTDSNRA-  278 (308)
Q Consensus       209 d~~i~~wd~~~~~~~~~~-------~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~-  278 (308)
                       +-+..||..+++. .+.       .....|.++...++ .+..|+.. -+..||..+..-  +......+ ....|.+ 
T Consensus       517 -~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~--~~~~~~~gl~~~~i~~i  591 (795)
T 4a2l_A          517 -EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQI--KRYNTTNGLPNNVVYGI  591 (795)
T ss_dssp             -SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEE--EEECGGGTCSCSCEEEE
T ss_pred             -CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcE--EEeCCCCCCchhheEEE
Confidence             6788899877665 322       12357899998887 55555555 577888766421  11111111 1234666 


Q ss_pred             EEecCCCeEEEeec
Q 021744          279 HFSRDVTSLLGSVS  292 (308)
Q Consensus       279 ~~s~d~~~l~~s~s  292 (308)
                      ...++|.+.+++..
T Consensus       592 ~~d~~g~lWi~t~~  605 (795)
T 4a2l_A          592 LEDSFGRLWLSTNR  605 (795)
T ss_dssp             EECTTSCEEEEETT
T ss_pred             EECCCCCEEEEcCC
Confidence            66777877666543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.24  E-value=0.00095  Score=62.44  Aligned_cols=183  Identities=12%  Similarity=0.009  Sum_probs=106.4

Q ss_pred             eeEEe-cCCCe-e-eccCC----CcEEEEECCCC-CCcccccceeeeeeeeeeeecCCce-EEeeCC-----CeEEEEEc
Q 021744           71 AKRFA-NNTWG-R-NNNFN----NHSNNYRAGNS-KNSNINNRAVIKTDILCRNWVQGNC-MYGEKC-----KFLHSWTV  136 (308)
Q Consensus        71 ~i~~s-~~g~~-~-s~~~d----~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d-----~~i~iwd~  136 (308)
                      ..+|| |||+. | +...+    .+|+++|++++ +.+...   .........|+|++.. +....+     ..|+++++
T Consensus       178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~---~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l  254 (751)
T 2xe4_A          178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK---VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM  254 (751)
T ss_dssp             EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC---EEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred             eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc---ccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence            68999 99997 3 33222    35999999888 643211   1222456788999854 444433     36888888


Q ss_pred             CCCcee-eeEee-CcccceEEEEEeCCCCEEEEeeC---CCcEEEEeCCCC--eE-EEEEe--CCCeeEEEE-cCCCEEE
Q 021744          137 GDGFKL-LTQLE-GHQKVVSGITLPSGSDKLYSGSK---DETVRVWDCASG--QC-AGVIN--LGGEVGCMI-SEGPWIF  205 (308)
Q Consensus       137 ~~~~~~-~~~~~-~h~~~v~~~~~~~~~~~l~s~s~---dg~v~~wd~~~~--~~-~~~~~--~~~~v~~~~-~~~~~l~  205 (308)
                      .++... ...+. ........+.|+||+++|+..+.   ...|.++|+.++  +. +..+.  ......... ..++.|+
T Consensus       255 gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~  334 (751)
T 2xe4_A          255 GKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLV  334 (751)
T ss_dssp             TSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEE
T ss_pred             CCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEE
Confidence            776211 22222 22345678899999998876553   346888898875  22 12222  222323332 4466554


Q ss_pred             -EEc-C----CcEEEEEcCC-Cceee-eeCCCC--CEEEEEEeCC-EEEEEcCCCeEE--EEEc
Q 021744          206 -IGV-T----NFVKAWNTQT-NTDLS-LSGPVG--QVYAMAVGND-LLFAGTQDGAIL--AWKF  256 (308)
Q Consensus       206 -~~~-d----~~i~~wd~~~-~~~~~-~~~~~~--~v~~~~~~~~-~l~~g~~dg~i~--iwd~  256 (308)
                       .+. +    ..|..+|+.+ ++... +..+..  .+..+.+..+ ++++...++..+  ++++
T Consensus       335 ~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          335 ILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred             EEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence             443 3    2677788775 23233 333433  4566777766 777777888655  4554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.21  E-value=0.0039  Score=58.56  Aligned_cols=215  Identities=10%  Similarity=-0.016  Sum_probs=129.0

Q ss_pred             eeEEecCCCeeeccCCCcEEEEECCCCCCccccc--------ceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCcee
Q 021744           71 AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINN--------RAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKL  142 (308)
Q Consensus        71 ~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~  142 (308)
                      ++...++|.+-.|+.++-|..++..+........        ......+.++....++.+..|..++-|..|+..++ +.
T Consensus       317 ~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~-~~  395 (781)
T 3v9f_A          317 YIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKR-VA  395 (781)
T ss_dssp             EEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEE-EE
T ss_pred             EEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCC-eE
Confidence            5666777877556666668888876543211110        01112366666667778877887777889998765 22


Q ss_pred             eeEe---eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe---CCCeeEEEEcC-CCEEEEEcCCcEEEE
Q 021744          143 LTQL---EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN---LGGEVGCMISE-GPWIFIGVTNFVKAW  215 (308)
Q Consensus       143 ~~~~---~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~---~~~~v~~~~~~-~~~l~~~~d~~i~~w  215 (308)
                      ..-.   ......|.++...+++.+.+ |+.++-+..+|.++++......   ....+.++..+ ...|.+|..+-|..|
T Consensus       396 ~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~  474 (781)
T 3v9f_A          396 IYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVI  474 (781)
T ss_dssp             ECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEE
T ss_pred             EEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEECCceEEE
Confidence            2111   12346788998887776544 6666778999988775432211   23456666543 334444444779999


Q ss_pred             EcCCCceeeeeC-C-----CCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceecc----ccCCCeEE-EEecC
Q 021744          216 NTQTNTDLSLSG-P-----VGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLK----VHTDSNRA-HFSRD  283 (308)
Q Consensus       216 d~~~~~~~~~~~-~-----~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~v~~-~~s~d  283 (308)
                      |..+++...+.. .     ...|.++...++ .|..|+.++-+..||..+..     +..+.    .....|.+ ...++
T Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-----~~~~~~~~~l~~~~i~~i~~d~~  549 (781)
T 3v9f_A          475 DLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQL-----VRKFNQYEGFCSNTINQIYRSSK  549 (781)
T ss_dssp             ESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCE-----EEEECTTTTCSCSCEEEEEECTT
T ss_pred             eCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCe-----EEEccCCCCCCCCeeEEEEECCC
Confidence            988776553321 1     357899988887 66666664457778876542     22221    12345666 66677


Q ss_pred             CCeEEEeec
Q 021744          284 VTSLLGSVS  292 (308)
Q Consensus       284 ~~~l~~s~s  292 (308)
                      |.+.+++..
T Consensus       550 g~lWi~T~~  558 (781)
T 3v9f_A          550 GQMWLATGE  558 (781)
T ss_dssp             SCEEEEETT
T ss_pred             CCEEEEECC
Confidence            776665543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.20  E-value=0.00084  Score=60.75  Aligned_cols=145  Identities=10%  Similarity=-0.081  Sum_probs=87.5

Q ss_pred             CCe-eeccCCCcEEEEECCCCCCccccccee-ee--eee-eeeeecC---C--ceEEee------CCCeEEEEEcCCCce
Q 021744           78 TWG-RNNNFNNHSNNYRAGNSKNSNINNRAV-IK--TDI-LCRNWVQ---G--NCMYGE------KCKFLHSWTVGDGFK  141 (308)
Q Consensus        78 g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~--~~~-~~~~~~~---~--~~~~g~------~d~~i~iwd~~~~~~  141 (308)
                      +.. +.++.|+.|..+|.++++.+-...... ..  .+. .-....+   +  ..+.+.      .++.|+-+|..++ +
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG-~  195 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTG-E  195 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTC-C
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCC-C
Confidence            344 777889999999998887543221111 00  010 0011111   2  334443      3789999999998 5


Q ss_pred             eeeEeeCcccc----------------------------------------e-EEEEEeCCCCEEEEeeC----------
Q 021744          142 LLTQLEGHQKV----------------------------------------V-SGITLPSGSDKLYSGSK----------  170 (308)
Q Consensus       142 ~~~~~~~h~~~----------------------------------------v-~~~~~~~~~~~l~s~s~----------  170 (308)
                      .+.........                                        + ..++++|+..+++.+..          
T Consensus       196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r  275 (582)
T 1flg_A          196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR  275 (582)
T ss_dssp             EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred             EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence            55544321000                                        0 13566777777766553          


Q ss_pred             ----------C----CcEEEEeCCCCeEEEEEeCC-----------CeeEEEE--cCCC---EEEEEc-CCcEEEEEcCC
Q 021744          171 ----------D----ETVRVWDCASGQCAGVINLG-----------GEVGCMI--SEGP---WIFIGV-TNFVKAWNTQT  219 (308)
Q Consensus       171 ----------d----g~v~~wd~~~~~~~~~~~~~-----------~~v~~~~--~~~~---~l~~~~-d~~i~~wd~~~  219 (308)
                                |    +.|..+|.++++.+..++..           .++..-.  .+++   .++.++ +|.++++|.++
T Consensus       276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t  355 (582)
T 1flg_A          276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN  355 (582)
T ss_dssp             SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred             ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence                      2    58999999999999998732           1121111  3564   566665 89999999999


Q ss_pred             Ccee
Q 021744          220 NTDL  223 (308)
Q Consensus       220 ~~~~  223 (308)
                      ++.+
T Consensus       356 G~~l  359 (582)
T 1flg_A          356 GKLQ  359 (582)
T ss_dssp             CCEE
T ss_pred             CCEe
Confidence            9877

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.17  E-value=0.0038  Score=58.57  Aligned_cols=215  Identities=11%  Similarity=-0.010  Sum_probs=127.6

Q ss_pred             eeEEecCCCeeeccCCCcEEEEECCCCCCcccc--cceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEee-
Q 021744           71 AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNIN--NRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLE-  147 (308)
Q Consensus        71 ~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~-  147 (308)
                      ++...++|.+-.|+.++-|..||..+++.....  .......+.++....++.+..|..++-+..++..++ +. ..+. 
T Consensus       367 ~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~-~~-~~~~~  444 (781)
T 3v9f_A          367 SVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLK-KF-QIIEL  444 (781)
T ss_dssp             EEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSC-EE-EECCS
T ss_pred             EEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCC-cE-EEecc
Confidence            566667777755565556888887644221100  011123366666666777877887788999998776 33 2232 


Q ss_pred             --CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC------CCeeEEEE--cCCCEEEEEcCCcEEEEEc
Q 021744          148 --GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL------GGEVGCMI--SEGPWIFIGVTNFVKAWNT  217 (308)
Q Consensus       148 --~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~------~~~v~~~~--~~~~~l~~~~d~~i~~wd~  217 (308)
                        .....|.++...+++.+.+ |+. +-+..+|..+++.......      ...+.++.  +++.+.+++..+-+..||.
T Consensus       445 ~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~  522 (781)
T 3v9f_A          445 EKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTP  522 (781)
T ss_dssp             TTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECT
T ss_pred             CCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeC
Confidence              1346788998888776444 445 4588999887654433321      24566664  4566666555456888998


Q ss_pred             CCCceeeeeC----CCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccc-cCCCeEE-EEecCCCeEEEe
Q 021744          218 QTNTDLSLSG----PVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKV-HTDSNRA-HFSRDVTSLLGS  290 (308)
Q Consensus       218 ~~~~~~~~~~----~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~-~~s~d~~~l~~s  290 (308)
                      .+++...+..    ....|.++...++ .|..|+.+|.|..||..+.+-  +....-.+ ....+.+ ...++|.+.+++
T Consensus       523 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~--~~~~~~~gl~~~~i~~i~~d~~g~lW~~t  600 (781)
T 3v9f_A          523 DMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDY--QVFQRKEGLPNTHIRAISEDKNGNIWAST  600 (781)
T ss_dssp             TCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCC--EEECGGGTCSCCCCCEEEECSSSCEEEEC
T ss_pred             CCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcE--EEccccCCCCCceEEEEEECCCCCEEEEc
Confidence            8776554432    2357899988877 555566666658888776421  11111111 1223555 666677666655


Q ss_pred             e
Q 021744          291 V  291 (308)
Q Consensus       291 ~  291 (308)
                      .
T Consensus       601 ~  601 (781)
T 3v9f_A          601 N  601 (781)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.13  E-value=0.00024  Score=63.46  Aligned_cols=170  Identities=15%  Similarity=0.078  Sum_probs=111.0

Q ss_pred             CCce--EEeeCCCeEEEEEcCCCceeeeEeeC-cccceEEEEE-e-CCCCEEEEee------------------CCCcEE
Q 021744          119 QGNC--MYGEKCKFLHSWTVGDGFKLLTQLEG-HQKVVSGITL-P-SGSDKLYSGS------------------KDETVR  175 (308)
Q Consensus       119 ~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~-h~~~v~~~~~-~-~~~~~l~s~s------------------~dg~v~  175 (308)
                      +|..  +....++.|.+.|+.+. +..+.+.- ....+..+++ . |++++++.++                  .++.+.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~-~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVM-KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTT-EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCc-eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            5544  55556788999999998 66663331 2345788887 5 8999988874                  356899


Q ss_pred             EEeCCCCeEEEEEeCCCe--eEEEEcCCCEEEEEc-C--------------------------------------CcEEE
Q 021744          176 VWDCASGQCAGVINLGGE--VGCMISEGPWIFIGV-T--------------------------------------NFVKA  214 (308)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~--v~~~~~~~~~l~~~~-d--------------------------------------~~i~~  214 (308)
                      +.|..+.+.+.++.....  -..+.++++++++++ +                                      +.|.+
T Consensus       179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V  258 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  258 (595)
T ss_dssp             EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence            999999999988884222  234567888887654 2                                      13666


Q ss_pred             EEcCC--Cce-e-eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCc--------ccccceeccccCCCeEEE
Q 021744          215 WNTQT--NTD-L-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTN--------CFEPAASLKVHTDSNRAH  279 (308)
Q Consensus       215 wd~~~--~~~-~-~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~~~v~~~  279 (308)
                      .|.++  ++. + .+.. .....++.++||   .++++-.+.+|.++|+.+.+.        ....+.++..-..+...+
T Consensus       259 ID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~a  337 (595)
T 1fwx_A          259 VDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA  337 (595)
T ss_dssp             EECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEE
T ss_pred             EeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEE
Confidence            67766  333 2 2222 234567999999   566666789999999996310        001233444333444449


Q ss_pred             EecCCCeEEEee
Q 021744          280 FSRDVTSLLGSV  291 (308)
Q Consensus       280 ~s~d~~~l~~s~  291 (308)
                      |+|+| ++.++.
T Consensus       338 F~~dG-~aY~t~  348 (595)
T 1fwx_A          338 FDGRG-NAYTSL  348 (595)
T ss_dssp             ECTTS-EEEEEE
T ss_pred             ECCCC-eEEEEE
Confidence            99999 776655

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.03  E-value=0.005  Score=52.66  Aligned_cols=187  Identities=8%  Similarity=-0.066  Sum_probs=111.6

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecC-Cce-EEeeCCCeEEEEEcCCCceeeeEe
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQ-GNC-MYGEKCKFLHSWTVGDGFKLLTQL  146 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~g~~d~~i~iwd~~~~~~~~~~~  146 (308)
                      .++|.+.+..  ++-...+.|..++++........ .........+++.+. +.+ ++....+.|.+.++... .....+
T Consensus       120 gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~-~~~~l~  197 (386)
T 3v65_B          120 ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA-HRKVLL  197 (386)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE-CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC-SCEEEE
T ss_pred             EEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE-eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC-ceEEee
Confidence            6899876554  66667788999998654321110 001112344555543 333 55556778888887654 222223


Q ss_pred             eCcccceEEEEEeCCCCEEEEee-CC-CcEEEEeCCCCeEEEEEeC-CCeeE--EEEcCCCEEEEEc--CCcEEEEEcCC
Q 021744          147 EGHQKVVSGITLPSGSDKLYSGS-KD-ETVRVWDCASGQCAGVINL-GGEVG--CMISEGPWIFIGV--TNFVKAWNTQT  219 (308)
Q Consensus       147 ~~h~~~v~~~~~~~~~~~l~s~s-~d-g~v~~wd~~~~~~~~~~~~-~~~v~--~~~~~~~~l~~~~--d~~i~~wd~~~  219 (308)
                      ...-.....++++|.+..|+... .. +.|...++........... -....  ++.+++..|+.+.  .+.|..+|+..
T Consensus       198 ~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          198 WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred             cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            33345678999998766654443 34 6788888774433322221 11122  3345666666543  67899999876


Q ss_pred             Ccee-eeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCC
Q 021744          220 NTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       220 ~~~~-~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~  259 (308)
                      .... .+.........|++..+ ++++-...+.|..++..++
T Consensus       278 ~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          278 SHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             CeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCC
Confidence            5443 23333456788888777 6677777889999986655

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.98  E-value=0.005  Score=51.05  Aligned_cols=173  Identities=12%  Similarity=-0.009  Sum_probs=101.2

Q ss_pred             eeeeeeecCCc-eEEeeCCCeEEEEEcCCCceeeeEeeC--------------------cccceEEEEEeC-CCCEEEEe
Q 021744          111 DILCRNWVQGN-CMYGEKCKFLHSWTVGDGFKLLTQLEG--------------------HQKVVSGITLPS-GSDKLYSG  168 (308)
Q Consensus       111 ~~~~~~~~~~~-~~~g~~d~~i~iwd~~~~~~~~~~~~~--------------------h~~~v~~~~~~~-~~~~l~s~  168 (308)
                      ...+.+.+++. +.++..++.|..|+..++. . ..+..                    ....+..+++++ +++ |+.+
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~-~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~   97 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG-F-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV   97 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTC-E-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCc-e-EEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence            34456677776 5677788999999987652 2 22210                    113578899997 554 5555


Q ss_pred             eCCCcEEEEeCCCCeEEEEEe---CC---CeeEEE--Ec-CCCEEEEEc------------------CCcEEEEEcCCCc
Q 021744          169 SKDETVRVWDCASGQCAGVIN---LG---GEVGCM--IS-EGPWIFIGV------------------TNFVKAWNTQTNT  221 (308)
Q Consensus       169 s~dg~v~~wd~~~~~~~~~~~---~~---~~v~~~--~~-~~~~l~~~~------------------d~~i~~wd~~~~~  221 (308)
                      ...+.+..+|..+++. ..+.   ..   .....+  .+ ++++.++..                  ++.|..||..+++
T Consensus        98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence            4455588888776542 2222   11   112223  46 677666542                  2578889988776


Q ss_pred             eeeeeCCCCCEEEEEEeCC--EE-EEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEe
Q 021744          222 DLSLSGPVGQVYAMAVGND--LL-FAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGS  290 (308)
Q Consensus       222 ~~~~~~~~~~v~~~~~~~~--~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s  290 (308)
                      ...+.........++++|+  .| ++-+..+.|..|++.....  .....+..... ... ++.++|.+.++.
T Consensus       177 ~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~--~~~~~~~~~~g-P~gi~~d~~G~l~va~  246 (322)
T 2fp8_A          177 TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK--GTAEVLVKIPN-PGNIKRNADGHFWVSS  246 (322)
T ss_dssp             EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT--TCEEEEEECSS-EEEEEECTTSCEEEEE
T ss_pred             EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC--CccceEEeCCC-CCCeEECCCCCEEEEe
Confidence            5533222234567999998  44 4446678999999875321  11111111112 444 888888866654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.94  E-value=0.00091  Score=61.55  Aligned_cols=217  Identities=11%  Similarity=0.030  Sum_probs=114.3

Q ss_pred             eeEEec-CCCe-eeccCCC-----------cEEEEECCCCCCcccccceeeee--eeeeeeecCCce-EEee-CCCeEEE
Q 021744           71 AKRFAN-NTWG-RNNNFNN-----------HSNNYRAGNSKNSNINNRAVIKT--DILCRNWVQGNC-MYGE-KCKFLHS  133 (308)
Q Consensus        71 ~i~~s~-~g~~-~s~~~d~-----------~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~g~-~d~~i~i  133 (308)
                      ..++.| +++. +.|+.+.           .+.+||..+.+............  .....+..++.+ +.|+ .+..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            467777 7777 7776543           58889998775432211111111  222455667766 7777 4568999


Q ss_pred             EEcCCCceeee--EeeCcccceEEEEEeCCCCEEEEee-CC-----CcEEEEeCCCCeEEEEE----e---CCCeeEEEE
Q 021744          134 WTVGDGFKLLT--QLEGHQKVVSGITLPSGSDKLYSGS-KD-----ETVRVWDCASGQCAGVI----N---LGGEVGCMI  198 (308)
Q Consensus       134 wd~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~s-~d-----g~v~~wd~~~~~~~~~~----~---~~~~v~~~~  198 (308)
                      ||+.+. +-..  .+.. ...-.++++.++++.++.|+ .+     ..+.+||..+.+-...-    .   .......+.
T Consensus       270 yd~~t~-~W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~  347 (656)
T 1k3i_A          270 YDSSSD-SWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR  347 (656)
T ss_dssp             EEGGGT-EEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred             ecCcCC-ceeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceee
Confidence            999876 2221  1211 11223455667888888888 44     57999999887643320    0   000000111


Q ss_pred             cCCCEEEEE----------cCCcEEEEEcCCCceee-eeCC---------CCCEEEEEEeC--C-EEEEEcCCC------
Q 021744          199 SEGPWIFIG----------VTNFVKAWNTQTNTDLS-LSGP---------VGQVYAMAVGN--D-LLFAGTQDG------  249 (308)
Q Consensus       199 ~~~~~l~~~----------~d~~i~~wd~~~~~~~~-~~~~---------~~~v~~~~~~~--~-~l~~g~~dg------  249 (308)
                      .+++.++.+          ....+..||..+..... ...+         ...-.++.+..  + +++.|+.++      
T Consensus       348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~  427 (656)
T 1k3i_A          348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA  427 (656)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred             cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc
Confidence            233333333          23467889988776431 1111         11234444432  3 677777532      


Q ss_pred             -----eEEEEEcCCCCcccccce--eccccCCCeEEEEecCCCeEEEee
Q 021744          250 -----AILAWKFNVTTNCFEPAA--SLKVHTDSNRAHFSRDVTSLLGSV  291 (308)
Q Consensus       250 -----~i~iwd~~~~~~~~~~~~--~~~~~~~~v~~~~s~d~~~l~~s~  291 (308)
                           .|.+||..+...  ..+.  .+........+...|++++++..+
T Consensus       428 ~~~~~~v~~yd~~~~~W--~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG  474 (656)
T 1k3i_A          428 TTNAHIITLGEPGTSPN--TVFASNGLYFARTFHTSVVLPDGSTFITGG  474 (656)
T ss_dssp             CCCEEEEECCSTTSCCE--EEECTTCCSSCCBSCEEEECTTSCEEEECC
T ss_pred             CCcceEEEcCCCCCCCe--eEEccCCCCCCcccCCeEECCCCCEEEECC
Confidence                 577787766432  2222  222111112225667888877554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.84  E-value=0.0034  Score=58.66  Aligned_cols=182  Identities=10%  Similarity=0.022  Sum_probs=104.9

Q ss_pred             eeeeeee-cCCce-EEe-----eCCCeEEEEEcCCC-ceeeeEeeCcccceEEEEEeCCCCEEEEeeCC-----CcEEEE
Q 021744          111 DILCRNW-VQGNC-MYG-----EKCKFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD-----ETVRVW  177 (308)
Q Consensus       111 ~~~~~~~-~~~~~-~~g-----~~d~~i~iwd~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-----g~v~~w  177 (308)
                      +....++ |+|.. +..     +....|+++|+.++ ......+.   .....++|+||++.|+....|     ..|.++
T Consensus       176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            5567899 99975 332     22246999999887 42222222   123578899999888776665     268888


Q ss_pred             eCCCCeE--EEEEe--CCCeeE--EEEcCCCEEEEEc----CCcEEEEEcCCC--ce--eee-eCCCCCEEEEEEeCC--
Q 021744          178 DCASGQC--AGVIN--LGGEVG--CMISEGPWIFIGV----TNFVKAWNTQTN--TD--LSL-SGPVGQVYAMAVGND--  240 (308)
Q Consensus       178 d~~~~~~--~~~~~--~~~~v~--~~~~~~~~l~~~~----d~~i~~wd~~~~--~~--~~~-~~~~~~v~~~~~~~~--  240 (308)
                      ++.+++.  ...+.  ......  .+++++++|+...    ...|.++|+.++  +.  ..+ ........++.|+..  
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~  332 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSH  332 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTE
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCE
Confidence            9887642  23333  222222  3468899887433    337889999875  33  322 334456677776555  


Q ss_pred             EEEEEcCC----CeEEEEEcCCCCccccccee-ccccCCCeEE-EEecCCCeEEEee----ceEEEEee
Q 021744          241 LLFAGTQD----GAILAWKFNVTTNCFEPAAS-LKVHTDSNRA-HFSRDVTSLLGSV----SFIMFIGQ  299 (308)
Q Consensus       241 ~l~~g~~d----g~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~-~~s~d~~~l~~s~----s~~i~~~~  299 (308)
                      +++....+    ..|..+++.++    ..... +..+...+.. .+++++..|+.+.    ...|++..
T Consensus       333 l~~~t~~~~a~~~~L~~~d~~~~----~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~d  397 (751)
T 2xe4_A          333 LVILTNEGGAVNHKLLIAPRGQP----SDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMM  397 (751)
T ss_dssp             EEEEECTTTCTTCEEEEEETTST----TCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEE
T ss_pred             EEEEeCCCCCCCcEEEEEcCCCc----ccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEe
Confidence            44444433    35666776542    11222 3334444454 6666677776443    33555544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.79  E-value=0.012  Score=49.50  Aligned_cols=187  Identities=8%  Similarity=-0.055  Sum_probs=111.8

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeec-CCce-EEeeCCCeEEEEEcCCCceeeeEe
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWV-QGNC-MYGEKCKFLHSWTVGDGFKLLTQL  146 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~g~~d~~i~iwd~~~~~~~~~~~  146 (308)
                      .++|.+....  ++-...+.|..++++.......... .......+++.+ .+.+ ++....+.|.+.++... .....+
T Consensus        77 ~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~-~~~~l~  154 (349)
T 3v64_C           77 ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA-HRKVLL  154 (349)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEE
T ss_pred             EEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC-CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC-ceEEEE
Confidence            6889876555  6666778899999865532211100 111234455654 3444 55556788999998755 222223


Q ss_pred             eCcccceEEEEEeCCCCEEE-EeeCC-CcEEEEeCCCCeEEEEEe-CCCeeE--EEEcCCCEEEEEc--CCcEEEEEcCC
Q 021744          147 EGHQKVVSGITLPSGSDKLY-SGSKD-ETVRVWDCASGQCAGVIN-LGGEVG--CMISEGPWIFIGV--TNFVKAWNTQT  219 (308)
Q Consensus       147 ~~h~~~v~~~~~~~~~~~l~-s~s~d-g~v~~wd~~~~~~~~~~~-~~~~v~--~~~~~~~~l~~~~--d~~i~~wd~~~  219 (308)
                      ...-.....++++|.+..|+ +-... +.|...++.......... .-....  ++.+++..|..+.  .+.|..+|+..
T Consensus       155 ~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          155 WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            33345678999998665554 44444 778888876432222112 111222  3345666666544  67899999876


Q ss_pred             Cceee-eeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCC
Q 021744          220 NTDLS-LSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       220 ~~~~~-~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~  259 (308)
                      ..... +.........|++..+ ++++-...+.|..++..++
T Consensus       235 ~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          235 SHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             CceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCC
Confidence            54432 3333456788888766 6666677888988886555

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.71  E-value=0.015  Score=48.19  Aligned_cols=215  Identities=10%  Similarity=-0.032  Sum_probs=125.9

Q ss_pred             CCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCC-e-eeccCCCcEEEEECCCCCCcccccceeeee
Q 021744           34 RQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTW-G-RNNNFNNHSNNYRAGNSKNSNINNRAVIKT  110 (308)
Q Consensus        34 ~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~-~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~  110 (308)
                      ....|+..+....+.          ....+..+-... .++|.+.+. . .+-...+.|..++++............-..
T Consensus        11 ~~~~I~~i~l~~~~~----------~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~   80 (318)
T 3sov_A           11 NRRDLRLVDATNGKE----------NATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLS   80 (318)
T ss_dssp             CEEEEEEEETTCTTS----------CCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSC
T ss_pred             ccCeEEEEECCCCce----------EEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCC
Confidence            357888888776510          011111122223 788888544 4 676777889999986553211111111112


Q ss_pred             eeeeeeec-CCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEee--CCCcEEEEeCCCCeEEE
Q 021744          111 DILCRNWV-QGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS--KDETVRVWDCASGQCAG  186 (308)
Q Consensus       111 ~~~~~~~~-~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~dg~v~~wd~~~~~~~~  186 (308)
                      ...+++.+ .+.+ ++-...+.|.++++... .....+...-.....++++|.+..|+...  ..+.|...++.......
T Consensus        81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~-~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~  159 (318)
T 3sov_A           81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI  159 (318)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             ccEEEEEcCCCeEEEEECCCCEEEEEECCCC-cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence            44455654 3444 55556788999998754 22222223445678999998766665544  35788888876432222


Q ss_pred             EEeCC-CeeE--EEEcCCCEEEEEc--CCcEEEEEcCCCceeee-eCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCC
Q 021744          187 VINLG-GEVG--CMISEGPWIFIGV--TNFVKAWNTQTNTDLSL-SGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       187 ~~~~~-~~v~--~~~~~~~~l~~~~--d~~i~~wd~~~~~~~~~-~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~  259 (308)
                      ..... ....  ++.+++..|+.+.  .+.|..+|+.......+ .........+++..+ ++.+-...+.|..++..++
T Consensus       160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G  239 (318)
T 3sov_A          160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTG  239 (318)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCC
Confidence            22211 1222  3356666666544  67899999876544432 334456788888877 6667777889999998766

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.59  E-value=0.022  Score=47.07  Aligned_cols=187  Identities=6%  Similarity=-0.105  Sum_probs=110.8

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEECCCC---CCcccccceeeeeeeeeeeec-CCce-EEeeCCCeEEEEEcCCCceee
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYRAGNS---KNSNINNRAVIKTDILCRNWV-QGNC-MYGEKCKFLHSWTVGDGFKLL  143 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~-~~g~~d~~i~iwd~~~~~~~~  143 (308)
                      .++|.+++..  ++-...+.|..++++..   .............+..+++.+ .+.. ++....+.|.+.++... ...
T Consensus        34 g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~-~~~  112 (316)
T 1ijq_A           34 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRK  112 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS-SEE
T ss_pred             EEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC-ceE
Confidence            6899987654  67667789999998651   111000100111244556654 3444 55567789999998754 222


Q ss_pred             eEeeCcccceEEEEEeCCCCEEEEeeC-C-CcEEEEeCCCCeEEEEEe-C-CCeeE--EEEcCCCEEEEEc--CCcEEEE
Q 021744          144 TQLEGHQKVVSGITLPSGSDKLYSGSK-D-ETVRVWDCASGQCAGVIN-L-GGEVG--CMISEGPWIFIGV--TNFVKAW  215 (308)
Q Consensus       144 ~~~~~h~~~v~~~~~~~~~~~l~s~s~-d-g~v~~wd~~~~~~~~~~~-~-~~~v~--~~~~~~~~l~~~~--d~~i~~w  215 (308)
                      ..+...-.....++++|.+..|+.+.. . +.|...++.. .....+. . -....  ++.+++..|+.+.  .+.|..+
T Consensus       113 ~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~  191 (316)
T 1ijq_A          113 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI  191 (316)
T ss_dssp             EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEE
Confidence            223333456789999997666554443 2 6788888763 3333332 1 12222  3345666666544  6799999


Q ss_pred             EcCCCceeeee---CCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCC
Q 021744          216 NTQTNTDLSLS---GPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       216 d~~~~~~~~~~---~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~  259 (308)
                      |+.......+.   ........+++..+ ++++-...+.|..++..++
T Consensus       192 d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          192 DVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             ETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             ecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCC
Confidence            99865443322   12345678888777 6667777889999997665

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.54  E-value=0.0031  Score=58.43  Aligned_cols=186  Identities=7%  Similarity=-0.074  Sum_probs=104.9

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEECCC----CCCcccccceeeeeeeeeeee-cCCce-EEeeCCCeEEEEEcCCCcee
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYRAGN----SKNSNINNRAVIKTDILCRNW-VQGNC-MYGEKCKFLHSWTVGDGFKL  142 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~g~~d~~i~iwd~~~~~~~  142 (308)
                      .++|.+.+..  ++-...+.|+.++++.    .... ............+++. ..+.+ ++....+.|.++++... ..
T Consensus       410 gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~-~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~-~~  487 (699)
T 1n7d_A          410 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD-TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KR  487 (699)
T ss_dssp             CCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCC-CBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC-CE
T ss_pred             EEccccccCeEEEEecCCCeEEEEecCCCCCCcceE-EEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC-ce
Confidence            6899986655  5656678899999865    1111 1111111123344554 33444 55556788999998765 22


Q ss_pred             eeEeeCcccceEEEEEeCCCCEEEEeeC-C-CcEEEEeCCCCeEEEEEe---CCCee-EEEEcCCCEEE-EEc-CCcEEE
Q 021744          143 LTQLEGHQKVVSGITLPSGSDKLYSGSK-D-ETVRVWDCASGQCAGVIN---LGGEV-GCMISEGPWIF-IGV-TNFVKA  214 (308)
Q Consensus       143 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~-d-g~v~~wd~~~~~~~~~~~---~~~~v-~~~~~~~~~l~-~~~-d~~i~~  214 (308)
                      ...+.........++++|.+.+|+.... . +.|...++... ....+.   ...+. .++.+++..|+ +-. .+.|..
T Consensus       488 ~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~  566 (699)
T 1n7d_A          488 KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS  566 (699)
T ss_dssp             EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEE
T ss_pred             EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEE
Confidence            2222222345678899986655544432 2 67877776532 222222   11121 23345555554 433 678999


Q ss_pred             EEcCCCceeeee---CCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCC
Q 021744          215 WNTQTNTDLSLS---GPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       215 wd~~~~~~~~~~---~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~  259 (308)
                      +|+.......+.   ........|++..+ ++++....+.|..++..++
T Consensus       567 ~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G  615 (699)
T 1n7d_A          567 IDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  615 (699)
T ss_dssp             ECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTE
T ss_pred             EccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCC
Confidence            998764433322   12234456777777 6666677889999997765

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.43  E-value=0.049  Score=47.21  Aligned_cols=184  Identities=7%  Similarity=0.014  Sum_probs=100.7

Q ss_pred             eeEEecCCCe--eeccCCC----cEEEEECCCCCCcccccceeeeeeeeeeeec-CCce-EEeeCCCeEEEEEcCCCcee
Q 021744           71 AKRFANNTWG--RNNNFNN----HSNNYRAGNSKNSNINNRAVIKTDILCRNWV-QGNC-MYGEKCKFLHSWTVGDGFKL  142 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~g~~d~~i~iwd~~~~~~~  142 (308)
                      .++++++|+.  ++-..++    .+.+.+. .+................+++.+ ++.+ ++...++.|..++..++ ..
T Consensus       183 ~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~-~~  260 (430)
T 3tc9_A          183 TICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ-ET  260 (430)
T ss_dssp             EEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT-EE
T ss_pred             eEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC-cE
Confidence            7999999994  4444332    2333333 22211000111112256677788 6665 55556789999999876 33


Q ss_pred             eeEee-CcccceEEEEEeCCCCEE-EEeeCCCcEEEEeCCC--CeE--EEEEe-----------------CCCeeEEE-E
Q 021744          143 LTQLE-GHQKVVSGITLPSGSDKL-YSGSKDETVRVWDCAS--GQC--AGVIN-----------------LGGEVGCM-I  198 (308)
Q Consensus       143 ~~~~~-~h~~~v~~~~~~~~~~~l-~s~s~dg~v~~wd~~~--~~~--~~~~~-----------------~~~~v~~~-~  198 (308)
                      ..... +.......++|+|++++| ++-...+.|..++...  ++.  +..+.                 ...+...+ .
T Consensus       261 ~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v  340 (430)
T 3tc9_A          261 TPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFV  340 (430)
T ss_dssp             EEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEE
T ss_pred             EEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEE
Confidence            12221 112356789999999954 5555678899987653  322  12221                 11122122 2


Q ss_pred             c---------CCCEEEEEc-CCcEEEEEcCCCceeeeeCC------------------CCCEEEEEEeC-C--EEEEEcC
Q 021744          199 S---------EGPWIFIGV-TNFVKAWNTQTNTDLSLSGP------------------VGQVYAMAVGN-D--LLFAGTQ  247 (308)
Q Consensus       199 ~---------~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~------------------~~~v~~~~~~~-~--~l~~g~~  247 (308)
                      .         ++.++++-. .+.|+.++ ..++...+.+.                  -.....|+++| +  ++++-..
T Consensus       341 ~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~  419 (430)
T 3tc9_A          341 KNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRE  419 (430)
T ss_dssp             ECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred             ccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECC
Confidence            1         234444433 67888888 34554433321                  12578899988 4  5555556


Q ss_pred             CCeEEEEEcC
Q 021744          248 DGAILAWKFN  257 (308)
Q Consensus       248 dg~i~iwd~~  257 (308)
                      .+.|+.++++
T Consensus       420 n~rIr~i~~e  429 (430)
T 3tc9_A          420 NRRIRKIGYE  429 (430)
T ss_dssp             GTEEEEEEEC
T ss_pred             CCeEEEEccC
Confidence            6778877754

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.42  E-value=0.032  Score=44.57  Aligned_cols=185  Identities=6%  Similarity=0.017  Sum_probs=107.2

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCce--eeeE
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFK--LLTQ  145 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~--~~~~  145 (308)
                      .+++.|++..  +....++.|...|.. ++........-......+++..++.+ ++.-.++.+.++++.....  .+..
T Consensus        31 Gla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~  109 (255)
T 3qqz_A           31 SLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKK  109 (255)
T ss_dssp             EEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEE
T ss_pred             eeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeee
Confidence            7999998765  666778888888886 54332211111122445566677766 4444667888988765422  1222


Q ss_pred             ee------CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC---CCeEEEEEeC--------CCeeEEE--EcC-CCEEE
Q 021744          146 LE------GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA---SGQCAGVINL--------GGEVGCM--ISE-GPWIF  205 (308)
Q Consensus       146 ~~------~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~---~~~~~~~~~~--------~~~v~~~--~~~-~~~l~  205 (308)
                      ..      ........++|+|+++.|+++.+.....+|.+.   ....+..+..        -.....+  .+. +++++
T Consensus       110 ~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lli  189 (255)
T 3qqz_A          110 IKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLV  189 (255)
T ss_dssp             EECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEE
T ss_pred             eccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEE
Confidence            21      123456899999998777777665555555543   1112222211        1122233  333 55666


Q ss_pred             EEc-CCcEEEEEcCCCcee--eeeC-C------CCCEEEEEEeCC-EEEEEcCCCeEEEEEc
Q 021744          206 IGV-TNFVKAWNTQTNTDL--SLSG-P------VGQVYAMAVGND-LLFAGTQDGAILAWKF  256 (308)
Q Consensus       206 ~~~-d~~i~~wd~~~~~~~--~~~~-~------~~~v~~~~~~~~-~l~~g~~dg~i~iwd~  256 (308)
                      .+. ++.+..+|.......  .+.. .      -.....|+|.++ .|...++-+.++.|.-
T Consensus       190 LS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          190 LSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP  251 (255)
T ss_dssp             EETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred             EECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence            665 678889997755222  2321 1      136789999999 5555577776666643

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.41  E-value=0.048  Score=46.51  Aligned_cols=173  Identities=6%  Similarity=-0.029  Sum_probs=103.2

Q ss_pred             cCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC-ce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCC
Q 021744           84 NFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG-NC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG  161 (308)
Q Consensus        84 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~  161 (308)
                      +....|+..++...+..  ........+..+.+.+.+ .+ ++....+.|+.+++... .....+.........+++++.
T Consensus        93 ~~~~~I~~i~~~~~~~~--~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~-~~~~~~~~~~~~p~glavd~~  169 (386)
T 3v65_B           93 ANRIDIRQVLPHRSEYT--LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS-NVEEVVSTGLESPGGLAVDWV  169 (386)
T ss_dssp             ECBSCEEEECTTSCCCE--EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-CEEEEECSSCSCCCCEEEETT
T ss_pred             ecCccceeeccCCCcEE--EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC-CcEEEEeCCCCCccEEEEEeC
Confidence            34456888887654322  111111235667777644 33 55556788999998866 333333323345578899976


Q ss_pred             CCEE-EEeeCCCcEEEEeCCCCeEEEEEeCC-CeeEE--EEcCCCEEEEEc--C-CcEEEEEcCCCceeee-eCCCCCEE
Q 021744          162 SDKL-YSGSKDETVRVWDCASGQCAGVINLG-GEVGC--MISEGPWIFIGV--T-NFVKAWNTQTNTDLSL-SGPVGQVY  233 (308)
Q Consensus       162 ~~~l-~s~s~dg~v~~wd~~~~~~~~~~~~~-~~v~~--~~~~~~~l~~~~--d-~~i~~wd~~~~~~~~~-~~~~~~v~  233 (308)
                      +..| ++-...+.|.+.++........+... .....  +.+.+..|+.+.  . +.|..+++.......+ ...-....
T Consensus       170 ~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~Pn  249 (386)
T 3v65_B          170 HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPN  249 (386)
T ss_dssp             TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEE
T ss_pred             CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCee
Confidence            5554 55556778988888754433333321 22233  345566666443  4 6899999876554433 23344678


Q ss_pred             EEEEeCC---EEEEEcCCCeEEEEEcCCC
Q 021744          234 AMAVGND---LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       234 ~~~~~~~---~l~~g~~dg~i~iwd~~~~  259 (308)
                      .|+++|+   ++++-+..+.|..+|+...
T Consensus       250 Glavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          250 GLTIDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             eEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            9999975   5555666788999998753

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.41  E-value=0.037  Score=45.15  Aligned_cols=183  Identities=11%  Similarity=0.093  Sum_probs=94.9

Q ss_pred             ecCCCe-eeccCC-----CcEEEEECCCCC---CcccccceeeeeeeeeeeecCCce-EEeeCC-----CeEEEEEcCCC
Q 021744           75 ANNTWG-RNNNFN-----NHSNNYRAGNSK---NSNINNRAVIKTDILCRNWVQGNC-MYGEKC-----KFLHSWTVGDG  139 (308)
Q Consensus        75 s~~g~~-~s~~~d-----~~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d-----~~i~iwd~~~~  139 (308)
                      ..++.. +.|+.+     ..+.+||..+.+   ............-..+... ++.+ +.|+.+     ..+.+||+.+.
T Consensus        60 ~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~  138 (301)
T 2vpj_A           60 SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNID  138 (301)
T ss_dssp             EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCC
Confidence            345666 777755     468899987665   2211111111111112222 4444 666643     46888998876


Q ss_pred             c-eeeeEeeCcccceEEEEEeCCCCEEEEeeCC-----CcEEEEeCCCCeEEEEEeCCC---eeEEEEcCCCEEEEEc-C
Q 021744          140 F-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKD-----ETVRVWDCASGQCAGVINLGG---EVGCMISEGPWIFIGV-T  209 (308)
Q Consensus       140 ~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-----g~v~~wd~~~~~~~~~~~~~~---~v~~~~~~~~~l~~~~-d  209 (308)
                      . +.+..+...... .+++.. ++..++.|+.+     ..+.+||+.+.+-...-....   ...++..++++++.|. +
T Consensus       139 ~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~  216 (301)
T 2vpj_A          139 QWSMLGDMQTAREG-AGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFD  216 (301)
T ss_dssp             EEEEEEECSSCCBS-CEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred             eEEECCCCCCCccc-ceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCC
Confidence            2 122222211111 122222 56667777654     468899998875443322111   1223345667767664 2


Q ss_pred             -----CcEEEEEcCCCceeeeeCCC--CCEEEEEEeCC-EEEEEcCC-----CeEEEEEcCCCC
Q 021744          210 -----NFVKAWNTQTNTDLSLSGPV--GQVYAMAVGND-LLFAGTQD-----GAILAWKFNVTT  260 (308)
Q Consensus       210 -----~~i~~wd~~~~~~~~~~~~~--~~v~~~~~~~~-~l~~g~~d-----g~i~iwd~~~~~  260 (308)
                           ..+.+||+.+.+-..+....  ..-.+++...+ +++.|+.+     ..|.+||..+.+
T Consensus       217 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          217 GTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             SSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             CCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence                 46899999988655332111  11123333455 66666654     357788887653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.34  E-value=0.046  Score=44.83  Aligned_cols=184  Identities=10%  Similarity=0.001  Sum_probs=99.1

Q ss_pred             eeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCC--cEEEEeCCCCeEEEE
Q 021744          111 DILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE--TVRVWDCASGQCAGV  187 (308)
Q Consensus       111 ~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg--~v~~wd~~~~~~~~~  187 (308)
                      ...+.+.+++.+ ++...++.|..||....  ....+. -...+..++++++++++++.....  .|..+|..+++....
T Consensus        34 pegia~~~~g~lyv~d~~~~~I~~~d~~g~--~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~  110 (306)
T 2p4o_A           34 LENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  110 (306)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             cceEEECCCCCEEEEeCCCCeEEEECCCCc--eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence            344566677766 44446788988987754  222222 234678999999998666554332  477778787775443


Q ss_pred             EeCC--CeeE--EEEcCCCEEEEEc-CCcEEEEEcCCCcee-e-ee---------CCCCCEEEEEEeCC-EEEEEcCCCe
Q 021744          188 INLG--GEVG--CMISEGPWIFIGV-TNFVKAWNTQTNTDL-S-LS---------GPVGQVYAMAVGND-LLFAGTQDGA  250 (308)
Q Consensus       188 ~~~~--~~v~--~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~-~~---------~~~~~v~~~~~~~~-~l~~g~~dg~  250 (308)
                      ....  ....  +.++++..+++.. ++.|..+|..+++.. . ..         ..-.....+..... ++++-+..+.
T Consensus       111 ~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~  190 (306)
T 2p4o_A          111 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKML  190 (306)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTE
T ss_pred             EeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCE
Confidence            3321  1111  2233344444443 789999998765321 1 00         11124555632223 5566677889


Q ss_pred             EEEEEcCC-CCcccccceeccccCCCeEEEEecCCCeEEEee-ceEEEEee
Q 021744          251 ILAWKFNV-TTNCFEPAASLKVHTDSNRAHFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       251 i~iwd~~~-~~~~~~~~~~~~~~~~~v~~~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      |..|++.. +..  .....+.....+-..++.++|.+.++.. ...|....
T Consensus       191 I~~~~~~~~g~~--~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~  239 (306)
T 2p4o_A          191 LLRIPVDSTDKP--GEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIA  239 (306)
T ss_dssp             EEEEEBCTTSCB--CCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred             EEEEEeCCCCCC--CccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEEC
Confidence            99999875 211  1112221111122226778887655543 33344433

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.33  E-value=0.047  Score=44.68  Aligned_cols=227  Identities=9%  Similarity=0.015  Sum_probs=114.2

Q ss_pred             CceEEecC--CCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCC----CcEEEEECCCCCC
Q 021744           27 GLSTADTR--QKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFN----NHSNNYRAGNSKN   99 (308)
Q Consensus        27 ~~~~s~s~--d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d----~~i~vwd~~~~~~   99 (308)
                      .+++.|+.  ...+.++|..+......      .+.+.+..+|.    +...++.. +.|+.+    ..+.+||..+.+.
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~------~~~p~~r~~~~----~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W   82 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDI------RCPFEKRRDAA----CVFWDNVVYILGGSQLFPIKRMDCYNVVKDSW   82 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEEC------CCCSCCCBSCE----EEEETTEEEEECCBSSSBCCEEEEEETTTTEE
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecC------CCCCcccceeE----EEEECCEEEEEeCCCCCCcceEEEEeCCCCeE
Confidence            34555554  35778888776521111      12233333332    22345666 777755    6688888876643


Q ss_pred             cccccceeeeeeeeeeeecCCce-EEeeCC------CeEEEEEcCCCc-eeeeEeeCcccceEEEEEeCCCCEEEEeeC-
Q 021744          100 SNINNRAVIKTDILCRNWVQGNC-MYGEKC------KFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSK-  170 (308)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d------~~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-  170 (308)
                      ...........-..+.. .++.+ +.|+.+      ..+.+||+.+.. +.+..+...... .+++.. ++..++.|+. 
T Consensus        83 ~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~  159 (306)
T 3ii7_A           83 YSKLGPPTPRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCS-HGMVEA-NGLIYVCGGSL  159 (306)
T ss_dssp             EEEECCSSCCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TTEEEEECCEE
T ss_pred             EECCCCCccccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcce-eEEEEE-CCEEEEECCCC
Confidence            21111111111111222 24444 777755      568899988762 111111111111 122222 5566666653 


Q ss_pred             --------CCcEEEEeCCCCeEEEEEeCCC---eeEEEEcCCCEEEEEc-C-----CcEEEEEcCCCceeeee---CCCC
Q 021744          171 --------DETVRVWDCASGQCAGVINLGG---EVGCMISEGPWIFIGV-T-----NFVKAWNTQTNTDLSLS---GPVG  230 (308)
Q Consensus       171 --------dg~v~~wd~~~~~~~~~~~~~~---~v~~~~~~~~~l~~~~-d-----~~i~~wd~~~~~~~~~~---~~~~  230 (308)
                              -..+.+||+.+.+-...-....   ...++..++++++.|. +     ..+.+||+.+.+-..+.   ....
T Consensus       160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~  239 (306)
T 3ii7_A          160 GNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGV  239 (306)
T ss_dssp             SCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBS
T ss_pred             CCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcc
Confidence                    3458899998875433222111   1223344667776654 2     46899999987655332   1122


Q ss_pred             CEEEEEEeCC-EEEEEcCC-----CeEEEEEcCCCCcccccceec
Q 021744          231 QVYAMAVGND-LLFAGTQD-----GAILAWKFNVTTNCFEPAASL  269 (308)
Q Consensus       231 ~v~~~~~~~~-~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~  269 (308)
                      ... ++...+ +++.|+.+     ..+.+||..+.+.  +.+..+
T Consensus       240 ~~~-~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W--~~~~~~  281 (306)
T 3ii7_A          240 TVK-CAAVGSIVYVLAGFQGVGRLGHILEYNTETDKW--VANSKV  281 (306)
T ss_dssp             CCE-EEEETTEEEEEECBCSSSBCCEEEEEETTTTEE--EEEEEE
T ss_pred             cee-EEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeE--EeCCCc
Confidence            223 333355 66677643     4688899887642  444443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.33  E-value=0.063  Score=46.02  Aligned_cols=188  Identities=6%  Similarity=-0.082  Sum_probs=112.0

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEECCCCCC---cccccceeeeeeeeeeeec-CCce-EEeeCCCeEEEEEcCCCceee
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKN---SNINNRAVIKTDILCRNWV-QGNC-MYGEKCKFLHSWTVGDGFKLL  143 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~-~~g~~d~~i~iwd~~~~~~~~  143 (308)
                      .++|.+.+..  ++-...+.|+.++++....   ..............+++.. .+.+ ++....+.|.+.++... ...
T Consensus       116 ~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~-~~~  194 (400)
T 3p5b_L          116 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRK  194 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC-SEE
T ss_pred             EEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC-ceE
Confidence            7899986554  6666778898898864221   0000110111244455554 3444 55666788999988765 333


Q ss_pred             eEeeCcccceEEEEEeCCCCEEEEeeC--CCcEEEEeCCCCeEEEEEeCC-CeeEE--EEcCCCEEEEEc--CCcEEEEE
Q 021744          144 TQLEGHQKVVSGITLPSGSDKLYSGSK--DETVRVWDCASGQCAGVINLG-GEVGC--MISEGPWIFIGV--TNFVKAWN  216 (308)
Q Consensus       144 ~~~~~h~~~v~~~~~~~~~~~l~s~s~--dg~v~~wd~~~~~~~~~~~~~-~~v~~--~~~~~~~l~~~~--d~~i~~wd  216 (308)
                      ..+...-.....++++|.+..|+....  .+.|...++........+... .....  +.+++..|+.+.  .+.|..+|
T Consensus       195 ~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d  274 (400)
T 3p5b_L          195 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID  274 (400)
T ss_dssp             EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEe
Confidence            333333456789999997666654442  368888888744333333211 22333  345667666554  67899999


Q ss_pred             cCCCceeeee---CCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCC
Q 021744          217 TQTNTDLSLS---GPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       217 ~~~~~~~~~~---~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~  259 (308)
                      +.......+.   ........+++..+ ++.+-...+.|..+|..++
T Consensus       275 ~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          275 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             TTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSC
T ss_pred             CCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCC
Confidence            8765544322   22345678888777 6677777888999997666

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.25  E-value=0.058  Score=43.99  Aligned_cols=181  Identities=12%  Similarity=0.155  Sum_probs=92.7

Q ss_pred             CCCe-eeccCC-----CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCC-----CeEEEEEcCCCc-eee
Q 021744           77 NTWG-RNNNFN-----NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKC-----KFLHSWTVGDGF-KLL  143 (308)
Q Consensus        77 ~g~~-~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d-----~~i~iwd~~~~~-~~~  143 (308)
                      ++.. +.|+.+     ..+.+||..+.+............-..+.. .++.. +.|+.+     ..+.+||+.+.. +.+
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~  139 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV  139 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence            5556 777754     357888887654321111111111111222 24444 667654     357788887762 111


Q ss_pred             eEeeCcccceEEEEEeCCCCEEEEeeCC-------CcEEEEeCCCCeEEEEEeCCC---eeEEEEcCCCEEEEEc-C---
Q 021744          144 TQLEGHQKVVSGITLPSGSDKLYSGSKD-------ETVRVWDCASGQCAGVINLGG---EVGCMISEGPWIFIGV-T---  209 (308)
Q Consensus       144 ~~~~~h~~~v~~~~~~~~~~~l~s~s~d-------g~v~~wd~~~~~~~~~~~~~~---~v~~~~~~~~~l~~~~-d---  209 (308)
                      ..+...... .+++.. ++..++.|+.+       ..+.+||+.+.+-...-....   ...++..++++++.|. +   
T Consensus       140 ~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  217 (302)
T 2xn4_A          140 APMNTRRSS-VGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPL  217 (302)
T ss_dssp             CCCSSCCBS-CEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSS
T ss_pred             CCCCCcccC-ceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCc
Confidence            112211111 222222 45666666543       358899998775443322111   1223345677777664 3   


Q ss_pred             --CcEEEEEcCCCceeeeeCCCC--CEEEEEEeCC-EEEEEcCCC-----eEEEEEcCCCC
Q 021744          210 --NFVKAWNTQTNTDLSLSGPVG--QVYAMAVGND-LLFAGTQDG-----AILAWKFNVTT  260 (308)
Q Consensus       210 --~~i~~wd~~~~~~~~~~~~~~--~v~~~~~~~~-~l~~g~~dg-----~i~iwd~~~~~  260 (308)
                        ..+.+||+.+.+-..+.....  .-.+++...+ +++.|+.++     .+.+||..+.+
T Consensus       218 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          218 VRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             ccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence              368999999876553322111  1122334455 666666543     48899988754

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.19  E-value=0.097  Score=45.39  Aligned_cols=184  Identities=10%  Similarity=0.048  Sum_probs=96.8

Q ss_pred             eeEEecCCCe-eeccCC---Cc-EEEEECCCCCCcccccceeeeeeeeeeeec-CCce-EEeeCCCeEEEEEcCCCceee
Q 021744           71 AKRFANNTWG-RNNNFN---NH-SNNYRAGNSKNSNINNRAVIKTDILCRNWV-QGNC-MYGEKCKFLHSWTVGDGFKLL  143 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d---~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~g~~d~~i~iwd~~~~~~~~  143 (308)
                      .++++++|.+ ++-...   .. +...+...+ .........-.....+++.+ ++.+ ++...++.|+.++..++ ...
T Consensus       186 giavd~dG~lyVad~~~~~~~~gv~~~~~~~~-~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g-~~~  263 (433)
T 4hw6_A          186 DVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG-FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG-TLT  263 (433)
T ss_dssp             EEEECTTCCEEEEECCSCTTSEEEEEECGGGT-TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC-CEE
T ss_pred             EEEECCCCCEEEEcCCCCcccceEEEEECCCC-eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC-eEE
Confidence            7999999998 554422   11 222222211 11000111112245566777 6666 44456788999998866 332


Q ss_pred             eEe-e-CcccceEEEEEeCCCCEE-EEeeCCCcEEEEeCC--CCeE--EEEEe-C----------------CCeeEEEE-
Q 021744          144 TQL-E-GHQKVVSGITLPSGSDKL-YSGSKDETVRVWDCA--SGQC--AGVIN-L----------------GGEVGCMI-  198 (308)
Q Consensus       144 ~~~-~-~h~~~v~~~~~~~~~~~l-~s~s~dg~v~~wd~~--~~~~--~~~~~-~----------------~~~v~~~~-  198 (308)
                      ..+ . +....-..++|+|+++.| ++-...+.|+.+++.  +++.  ...+. .                ..+..... 
T Consensus       264 ~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~  343 (433)
T 4hw6_A          264 EEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFV  343 (433)
T ss_dssp             EEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEE
T ss_pred             EEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEE
Confidence            222 1 112233469999999855 555567889998765  3321  11221 1                11221222 


Q ss_pred             --------c-CCCEEEEEc-CCcEEEEEcCCCceeeeeCC------------------CCCEEEEEEe-CC--EEEEEcC
Q 021744          199 --------S-EGPWIFIGV-TNFVKAWNTQTNTDLSLSGP------------------VGQVYAMAVG-ND--LLFAGTQ  247 (308)
Q Consensus       199 --------~-~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~------------------~~~v~~~~~~-~~--~l~~g~~  247 (308)
                              . ++.++++-. .+.|+.++. ++...++.+.                  -.....|+++ ++  ++++=..
T Consensus       344 ~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~  422 (433)
T 4hw6_A          344 KNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCD  422 (433)
T ss_dssp             ECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred             ccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCC
Confidence                    2 334444444 668888885 4544443321                  1236788888 44  4555555


Q ss_pred             CCeEEEEEcC
Q 021744          248 DGAILAWKFN  257 (308)
Q Consensus       248 dg~i~iwd~~  257 (308)
                      .++|+.++++
T Consensus       423 n~rIr~i~~e  432 (433)
T 4hw6_A          423 NHRVRKIAPE  432 (433)
T ss_dssp             GTEEEEEEEC
T ss_pred             CCEEEEEecC
Confidence            6777777654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.11  E-value=0.093  Score=43.79  Aligned_cols=195  Identities=12%  Similarity=0.115  Sum_probs=112.5

Q ss_pred             eeEEecCC---Ce-eeccCCCcEEEEECCCCCCcccccceeeee--eeeeeeecCCc---e--EEeeC--CCeEEEEEcC
Q 021744           71 AKRFANNT---WG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKT--DILCRNWVQGN---C--MYGEK--CKFLHSWTVG  137 (308)
Q Consensus        71 ~i~~s~~g---~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~--~~g~~--d~~i~iwd~~  137 (308)
                      +++.+|..   .. +.....+-+.+||+ +++.+.....+.-..  +.. .|...+.   .  ++.-.  ++.|.+|++.
T Consensus        30 avw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iD  107 (355)
T 3amr_A           30 AIWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAID  107 (355)
T ss_dssp             EEECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred             cEecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence            78887752   33 44455677999999 565543322111111  111 2322332   2  22333  5889999774


Q ss_pred             CCceeeeEeeC------cc-cceEEEEE--eCC-CC-EEEEeeCCCcEEEEeCC-------CCeEEEEEeCCCeeEEE-E
Q 021744          138 DGFKLLTQLEG------HQ-KVVSGITL--PSG-SD-KLYSGSKDETVRVWDCA-------SGQCAGVINLGGEVGCM-I  198 (308)
Q Consensus       138 ~~~~~~~~~~~------h~-~~v~~~~~--~~~-~~-~l~s~s~dg~v~~wd~~-------~~~~~~~~~~~~~v~~~-~  198 (308)
                      .....+..+..      .. ..+..+++  +|. +. +++....+|.+..|++.       +.+.++++.....+..+ .
T Consensus       108 p~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~Egcvv  187 (355)
T 3amr_A          108 GKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAA  187 (355)
T ss_dssp             TTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEE
T ss_pred             CCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEE
Confidence            22122444421      11 56677887  664 43 67888889999999883       34677888866655443 3


Q ss_pred             -cCCCEEEEEc-CCcEEEEEcC-----CCceeeee--CC-CCCEEEEEEe--CC---EEEEEc-CCCeEEEEEcCCCCcc
Q 021744          199 -SEGPWIFIGV-TNFVKAWNTQ-----TNTDLSLS--GP-VGQVYAMAVG--ND---LLFAGT-QDGAILAWKFNVTTNC  262 (308)
Q Consensus       199 -~~~~~l~~~~-d~~i~~wd~~-----~~~~~~~~--~~-~~~v~~~~~~--~~---~l~~g~-~dg~i~iwd~~~~~~~  262 (308)
                       +....|+++. +..|..+|.+     +.+.+...  ++ ...+..|++-  ++   +|++++ .+....+||....   
T Consensus       188 Dd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~---  264 (355)
T 3amr_A          188 DDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK---  264 (355)
T ss_dssp             ETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT---
T ss_pred             cCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC---
Confidence             4567777776 5567777755     23344222  22 2367888874  43   555555 6779999999732   


Q ss_pred             cccceecc
Q 021744          263 FEPAASLK  270 (308)
Q Consensus       263 ~~~~~~~~  270 (308)
                      .+.+..+.
T Consensus       265 ~~~vg~f~  272 (355)
T 3amr_A          265 NKYVADFR  272 (355)
T ss_dssp             CCEEEEEE
T ss_pred             CcEEEEEE
Confidence            14555553

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.07  E-value=0.097  Score=43.19  Aligned_cols=173  Identities=10%  Similarity=0.024  Sum_probs=101.8

Q ss_pred             CCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC-ce-EEeeCCCeEEEEEcCCC---ceeeeEeeCcccceEEEEEe
Q 021744           85 FNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG-NC-MYGEKCKFLHSWTVGDG---FKLLTQLEGHQKVVSGITLP  159 (308)
Q Consensus        85 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~d~~i~iwd~~~~---~~~~~~~~~h~~~v~~~~~~  159 (308)
                      ....|+..|+++.+...  .......+..+.+.+.+ .. ++....+.|+.+++...   ......+...-.....++++
T Consensus         8 ~~~~I~~i~~~~~~~~~--~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd   85 (316)
T 1ijq_A            8 NRHEVRKMTLDRSEYTS--LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD   85 (316)
T ss_dssp             CBSSEEEEETTSCCCEE--EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             CCCeEEEEECCCcceEe--hhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEe
Confidence            34568888887654321  11112235667777654 33 55566789999998761   12222232223456789998


Q ss_pred             CCCCEE-EEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEE-c-C-CcEEEEEcCCCceeee-eCCCCC
Q 021744          160 SGSDKL-YSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIG-V-T-NFVKAWNTQTNTDLSL-SGPVGQ  231 (308)
Q Consensus       160 ~~~~~l-~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~-~-d-~~i~~wd~~~~~~~~~-~~~~~~  231 (308)
                      +.+..| ++-...+.|.+.++........+. .......+  .+.+..|+.+ . . +.|..+++.......+ ...-..
T Consensus        86 ~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~  165 (316)
T 1ijq_A           86 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW  165 (316)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC
T ss_pred             ecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCC
Confidence            755554 555667899999987544333333 21223333  4556655543 3 3 6888888875544333 223456


Q ss_pred             EEEEEEeCC---EEEEEcCCCeEEEEEcCCC
Q 021744          232 VYAMAVGND---LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       232 v~~~~~~~~---~l~~g~~dg~i~iwd~~~~  259 (308)
                      ...|+++++   ++++-+..+.|..+|+...
T Consensus       166 P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~  196 (316)
T 1ijq_A          166 PNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (316)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence            889999976   4555566789999999753

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.05  E-value=0.098  Score=42.97  Aligned_cols=213  Identities=8%  Similarity=-0.046  Sum_probs=104.1

Q ss_pred             CeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccC-----C------CcEEEEECCCCCCcccc
Q 021744           36 KVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNF-----N------NHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        36 ~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~-----d------~~i~vwd~~~~~~~~~~  103 (308)
                      ..+..+|..+....     ....|.+.+..+|    .+...++.. +.|+.     .      ..+.+||..+.+.....
T Consensus        13 ~~~~~yd~~~~~W~-----~~~~~~p~~r~~~----~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A           13 EGAVAYDPAANECY-----CASLSSQVPKNHV----SLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             TEEEEEETTTTEEE-----EEECCCCSCSSEE----EEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             CceEEECCCCCeEe-----cCCCCCCCCccce----EEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            57888888775211     1222323333333    233456666 77763     1      12667787665432111


Q ss_pred             cceeeeeeeeeeeecCCce-EEeeCC--------CeEEEEEcCCCc-eeeeEeeCcccceEEEEEeCCCCEEEEeeC-C-
Q 021744          104 NRAVIKTDILCRNWVQGNC-MYGEKC--------KFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSK-D-  171 (308)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~-~~g~~d--------~~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-d-  171 (308)
                      .......-..+... ++.+ +.|+.+        ..+.+||+.+.. +.+..+...... .+++. .+++.++.|+. + 
T Consensus        84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~  160 (315)
T 4asc_A           84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSD  160 (315)
T ss_dssp             CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTT
T ss_pred             CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCC
Confidence            11111111112222 3433 666632        468899988762 112122211111 12222 34566677765 2 


Q ss_pred             ----CcEEEEeCCCCeEEEEEeCCC---eeEEEEcCCCEEEEEc-CC-----cEEEEEcCCCceeeeeCCC--CCEEEEE
Q 021744          172 ----ETVRVWDCASGQCAGVINLGG---EVGCMISEGPWIFIGV-TN-----FVKAWNTQTNTDLSLSGPV--GQVYAMA  236 (308)
Q Consensus       172 ----g~v~~wd~~~~~~~~~~~~~~---~v~~~~~~~~~l~~~~-d~-----~i~~wd~~~~~~~~~~~~~--~~v~~~~  236 (308)
                          ..+.+||+.+.+-...-..+.   ...+...++++++.|. ++     .+.+||+.+.+-..+....  ..-.+++
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  240 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV  240 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             CcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEE
Confidence                468899998775332212111   1223345677766654 32     5889999888655332211  1112333


Q ss_pred             EeCC-EEEEEcCC--------------CeEEEEEcCCCC
Q 021744          237 VGND-LLFAGTQD--------------GAILAWKFNVTT  260 (308)
Q Consensus       237 ~~~~-~l~~g~~d--------------g~i~iwd~~~~~  260 (308)
                      ...+ +++.|+.+              ..+.+||+.+.+
T Consensus       241 ~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          241 SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             EECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence            4455 55666543              236788887753

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.02  E-value=0.19  Score=45.82  Aligned_cols=216  Identities=7%  Similarity=-0.050  Sum_probs=127.1

Q ss_pred             cCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeee
Q 021744           33 TRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIK  109 (308)
Q Consensus        33 s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  109 (308)
                      +....|+.-+....+.          ....|..+-..+ .++|.+.+..  ++-..++.|+.++++........... ..
T Consensus        12 s~~~~I~~i~l~~~~~----------~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g-~~   80 (628)
T 4a0p_A           12 SRRADIRRISLETNNN----------NVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG-LD   80 (628)
T ss_dssp             EETTEEEEEESSCTTC----------EEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CS
T ss_pred             EeCCcEEEEECCCCCc----------ceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC-CC
Confidence            3667888888765410          001122222233 7999987665  67677888999988644221111111 11


Q ss_pred             eeeeeeeecC-Cce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEee--CCCcEEEEeCCCCeEE
Q 021744          110 TDILCRNWVQ-GNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS--KDETVRVWDCASGQCA  185 (308)
Q Consensus       110 ~~~~~~~~~~-~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~dg~v~~wd~~~~~~~  185 (308)
                      .+..+++... +.. ++....+.|.+.++.... ....+...-.....++++|....|+-..  ..+.|...++......
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~  159 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT  159 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence            2444555433 334 555667889999987552 2222223445678999998655665444  2567777887654433


Q ss_pred             EEEeCCCeeEEE--EcCCCEEEEEc--CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCC
Q 021744          186 GVINLGGEVGCM--ISEGPWIFIGV--TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTT  260 (308)
Q Consensus       186 ~~~~~~~~v~~~--~~~~~~l~~~~--d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~  260 (308)
                      .....-.....+  .++++.|+.+.  .+.|..+|+.......+.........+++..+ ++++-...+.|...|..+++
T Consensus       160 ~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          160 TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCC
Confidence            333322223333  45566666554  67899999976544433334445678888888 66666678899999976653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.99  E-value=0.13  Score=43.27  Aligned_cols=231  Identities=10%  Similarity=0.052  Sum_probs=119.0

Q ss_pred             eeEEecCCCe-eec------------cCCCcEEEEECCCC--CCcccccce--ee---eeeeeeeeec--CCc--e-EEe
Q 021744           71 AKRFANNTWG-RNN------------NFNNHSNNYRAGNS--KNSNINNRA--VI---KTDILCRNWV--QGN--C-MYG  125 (308)
Q Consensus        71 ~i~~s~~g~~-~s~------------~~d~~i~vwd~~~~--~~~~~~~~~--~~---~~~~~~~~~~--~~~--~-~~g  125 (308)
                      .+++.|+|.. +++            ..+|.|.++|.++.  +........  ..   ....-+.+.+  ++.  + +.-
T Consensus        54 Di~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvn  133 (355)
T 3sre_A           54 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN  133 (355)
T ss_dssp             EEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred             eeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEE
Confidence            5778888766 443            26899999998633  211111111  10   1233344444  342  2 221


Q ss_pred             e--CCCeEEEEEcCCCc---eeeeEeeCc-ccceEEEEEeCCCCEEEEee-----------------CCCcEEEEeCCCC
Q 021744          126 E--KCKFLHSWTVGDGF---KLLTQLEGH-QKVVSGITLPSGSDKLYSGS-----------------KDETVRVWDCASG  182 (308)
Q Consensus       126 ~--~d~~i~iwd~~~~~---~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s-----------------~dg~v~~wd~~~~  182 (308)
                      -  .+..|.+|++....   ..+.++.+. -.....+.+.+++.+.++..                 ..|.|..+|..  
T Consensus       134 h~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--  211 (355)
T 3sre_A          134 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--  211 (355)
T ss_dssp             CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--
T ss_pred             CCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--
Confidence            1  25677777765431   234444432 23578999999998777654                 12455555543  


Q ss_pred             eEEEEEe--CCCeeEEEEcCCCEEEEEc--CCcEEEEEcCC-Ccee---eeeCCCCCEEEEEEeC-C--EEEEEcCC-Ce
Q 021744          183 QCAGVIN--LGGEVGCMISEGPWIFIGV--TNFVKAWNTQT-NTDL---SLSGPVGQVYAMAVGN-D--LLFAGTQD-GA  250 (308)
Q Consensus       183 ~~~~~~~--~~~~v~~~~~~~~~l~~~~--d~~i~~wd~~~-~~~~---~~~~~~~~v~~~~~~~-~--~l~~g~~d-g~  250 (308)
                      +......  ....-.+++++++.|+++.  .+.|..|++.. ++..   .+ ......-.+++.+ +  +.+++..+ +.
T Consensus       212 ~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~  290 (355)
T 3sre_A          212 DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMR  290 (355)
T ss_dssp             CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHH
T ss_pred             eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceE
Confidence            3222222  1222235568898887654  77999999864 3322   22 2345567788877 4  33333322 34


Q ss_pred             EEEEEcCCCCcccccceeccc---cCCCeEEEEecCCCeEEEee-----ceEEEEee-cCceeEE
Q 021744          251 ILAWKFNVTTNCFEPAASLKV---HTDSNRAHFSRDVTSLLGSV-----SFIMFIGQ-NNKGVVC  306 (308)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~~---~~~~v~~~~s~d~~~l~~s~-----s~~i~~~~-~~~~~~~  306 (308)
                      |..|+-.....  ..+..+..   ....+...|..||+.+-++.     ...+|+.. ..+-++|
T Consensus       291 v~~~~P~~~~~--s~v~rI~~~~~~~~~v~~v~~ddG~~l~~~T~a~~~~g~L~iGsv~~~~l~c  353 (355)
T 3sre_A          291 IFFYDAENPPG--SEVLRIQDILSEEPKVTVVYAENGTVLQGSTVAAVYKGKLLIGTVFHKALYC  353 (355)
T ss_dssp             HHSCCTTSCCC--EEEEEEECTTSSSCEEEEEEEECSSSCCSEEEEEEETTEEEEEESSSCEEEE
T ss_pred             EEEECCCCCCC--CEEEEEEccCCCCcEEEEEEEcCCCEEEeeEEEEEECCEEEEEEcCCCceec
Confidence            44444332111  33333331   23334448888888765333     56677755 3334444

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.98  E-value=0.11  Score=42.42  Aligned_cols=184  Identities=10%  Similarity=0.089  Sum_probs=94.8

Q ss_pred             eeccC--CCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCC----CeEEEEEcCCCc-eeeeEeeCcccc
Q 021744           81 RNNNF--NNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKC----KFLHSWTVGDGF-KLLTQLEGHQKV  152 (308)
Q Consensus        81 ~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d----~~i~iwd~~~~~-~~~~~~~~h~~~  152 (308)
                      +.|+.  ...+.+||..+.+............-..+.. .++.+ +.|+.+    ..+.+||+.+.. +.+..+......
T Consensus        16 ~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~   94 (306)
T 3ii7_A           16 ALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF-WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDS   94 (306)
T ss_dssp             EEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE-ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBS
T ss_pred             EEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE-ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccc
Confidence            55554  3568888887654322111111111111222 24434 777754    678889988762 112222211111


Q ss_pred             eEEEEEeCCCCEEEEeeCC------CcEEEEeCCCCeEEEEEeCCC---eeEEEEcCCCEEEEEc----------CCcEE
Q 021744          153 VSGITLPSGSDKLYSGSKD------ETVRVWDCASGQCAGVINLGG---EVGCMISEGPWIFIGV----------TNFVK  213 (308)
Q Consensus       153 v~~~~~~~~~~~l~s~s~d------g~v~~wd~~~~~~~~~~~~~~---~v~~~~~~~~~l~~~~----------d~~i~  213 (308)
                      ...+.+  ++..++.|+.+      ..+.+||..+.+-...-....   ...++..++++++.|.          ...+.
T Consensus        95 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~  172 (306)
T 3ii7_A           95 LAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCE  172 (306)
T ss_dssp             CEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEE
T ss_pred             eeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEE
Confidence            122222  56677777765      468899998876433222111   1223345667666654          23588


Q ss_pred             EEEcCCCceeeeeCCC--CCEEEEEEeCC-EEEEEcCC-----CeEEEEEcCCCCcccccceec
Q 021744          214 AWNTQTNTDLSLSGPV--GQVYAMAVGND-LLFAGTQD-----GAILAWKFNVTTNCFEPAASL  269 (308)
Q Consensus       214 ~wd~~~~~~~~~~~~~--~~v~~~~~~~~-~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~  269 (308)
                      +||+.+.+-..+....  ..-.+++...+ +++.|+.+     ..+.+||+.+.+  ++.+..+
T Consensus       173 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~  234 (306)
T 3ii7_A          173 VYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNE--WKMVSPM  234 (306)
T ss_dssp             EEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTE--EEECCCC
T ss_pred             EeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCc--EEECCCC
Confidence            9999988655332211  11123334455 66666643     358899988764  2444433

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.94  E-value=0.13  Score=42.57  Aligned_cols=175  Identities=7%  Similarity=-0.017  Sum_probs=103.1

Q ss_pred             CCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC-ce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCC
Q 021744           85 FNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG-NC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS  162 (308)
Q Consensus        85 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~  162 (308)
                      ....|+..+++..................+.|.+.+ .+ .+....+.|+.+++.........+...-.....+++++.+
T Consensus        11 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~   90 (318)
T 3sov_A           11 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   90 (318)
T ss_dssp             CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred             ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence            356788999875531111111122235567777654 33 5556778899999876521112222223456789999755


Q ss_pred             CE-EEEeeCCCcEEEEeCCCCeEEEEEe--CCCeeE-EEEcCCCEEEEEc---CCcEEEEEcCCCceeee-eCCCCCEEE
Q 021744          163 DK-LYSGSKDETVRVWDCASGQCAGVIN--LGGEVG-CMISEGPWIFIGV---TNFVKAWNTQTNTDLSL-SGPVGQVYA  234 (308)
Q Consensus       163 ~~-l~s~s~dg~v~~wd~~~~~~~~~~~--~~~~v~-~~~~~~~~l~~~~---d~~i~~wd~~~~~~~~~-~~~~~~v~~  234 (308)
                      .. .++-...+.|.++++........+.  ...+.. .+.+.+..|+.+.   .+.|...++.......+ ...-...+.
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Png  170 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG  170 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred             CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccE
Confidence            44 4555667889999987543333332  222222 2345555555433   46888888875444333 233346789


Q ss_pred             EEEeCC---EEEEEcCCCeEEEEEcCCC
Q 021744          235 MAVGND---LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       235 ~~~~~~---~l~~g~~dg~i~iwd~~~~  259 (308)
                      |+++++   ++++=+..+.|..+|+...
T Consensus       171 lavd~~~~~lY~aD~~~~~I~~~d~dG~  198 (318)
T 3sov_A          171 LTLDYEEQKLYWADAKLNFIHKSNLDGT  198 (318)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEeccCCEEEEEECCCCEEEEEcCCCC
Confidence            999985   5555667789999998753

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.91  E-value=0.11  Score=41.39  Aligned_cols=188  Identities=12%  Similarity=-0.016  Sum_probs=113.6

Q ss_pred             eeeeeeeeecCCc-e-EEeeCCCeEEEEEcCCCceeeeEee-CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeE-
Q 021744          109 KTDILCRNWVQGN-C-MYGEKCKFLHSWTVGDGFKLLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC-  184 (308)
Q Consensus       109 ~~~~~~~~~~~~~-~-~~g~~d~~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~-  184 (308)
                      ..+..+++.+++. . +....++.|...|.. + +.++.+. +-....-.+++.+++.++++.-.++.+.++++..... 
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g-~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i  104 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G-DLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEV  104 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-C-CEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C-CEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCee
Confidence            3477788888764 3 556778999999988 6 5666653 2235678899998888777766778899998765432 


Q ss_pred             --EEEEeCC----C-----eeEEEEcCCCEEEEEc--CC-cEEEEEc--CCCceeeee-------CCCCCEEEEEEeCC-
Q 021744          185 --AGVINLG----G-----EVGCMISEGPWIFIGV--TN-FVKAWNT--QTNTDLSLS-------GPVGQVYAMAVGND-  240 (308)
Q Consensus       185 --~~~~~~~----~-----~v~~~~~~~~~l~~~~--d~-~i~~wd~--~~~~~~~~~-------~~~~~v~~~~~~~~-  240 (308)
                        +......    .     +-.++.+.++.|.++.  +. .|..|+-  .+.....+.       .+...+.+++++|. 
T Consensus       105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~t  184 (255)
T 3qqz_A          105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQK  184 (255)
T ss_dssp             EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTT
T ss_pred             eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCC
Confidence              2333211    1     2233456666666544  33 4555551  111111111       12345789999998 


Q ss_pred             --EEEEEcCCCeEEEEEcCCCCcccccceeccc-c------CCCeEE-EEecCCCeEEEeeceEEEEeecC
Q 021744          241 --LLFAGTQDGAILAWKFNVTTNCFEPAASLKV-H------TDSNRA-HFSRDVTSLLGSVSFIMFIGQNN  301 (308)
Q Consensus       241 --~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-~------~~~v~~-~~s~d~~~l~~s~s~~i~~~~~~  301 (308)
                        +++.....+.+..+|....-   .....+.. .      -...-. +|.++|.+.+++-...+|.....
T Consensus       185 g~lliLS~~s~~L~~~d~~g~~---~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~~  252 (255)
T 3qqz_A          185 NTLLVLSHESRALQEVTLVGEV---IGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTPQ  252 (255)
T ss_dssp             TEEEEEETTTTEEEEECTTCCE---EEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC-
T ss_pred             CeEEEEECCCCeEEEEcCCCCE---EEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEec
Confidence              67777788899999977531   12222221 1      012344 89999986667666677766543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.84  E-value=0.32  Score=45.60  Aligned_cols=188  Identities=6%  Similarity=-0.076  Sum_probs=112.1

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccce---eeeeeeeeeeecCC-ce-EEeeCCCeEEEEEcCCCceee
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRA---VIKTDILCRNWVQG-NC-MYGEKCKFLHSWTVGDGFKLL  143 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~-~~g~~d~~i~iwd~~~~~~~~  143 (308)
                      .|+|.+....  ++-...+.|+.++++...........   .......+++...+ .+ ++-...+.|.+.++... ...
T Consensus       428 gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~-~~~  506 (791)
T 3m0c_C          428 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRK  506 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS-SEE
T ss_pred             EEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC-eEE
Confidence            6888885544  66667788998888643110001111   11224456665544 33 56667789999998765 332


Q ss_pred             eEeeCcccceEEEEEeCCCCEEEEeeC--CCcEEEEeCCCCeEEEEEeCC-CeeEEE--EcCCCEEEEEc--CCcEEEEE
Q 021744          144 TQLEGHQKVVSGITLPSGSDKLYSGSK--DETVRVWDCASGQCAGVINLG-GEVGCM--ISEGPWIFIGV--TNFVKAWN  216 (308)
Q Consensus       144 ~~~~~h~~~v~~~~~~~~~~~l~s~s~--dg~v~~wd~~~~~~~~~~~~~-~~v~~~--~~~~~~l~~~~--d~~i~~wd  216 (308)
                      ..+...-.....|+++|...+|+....  .+.|...++........+... .....+  .+.+..|+.+.  .+.|..+|
T Consensus       507 ~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d  586 (791)
T 3m0c_C          507 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID  586 (791)
T ss_dssp             EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEe
Confidence            233334456889999997666655442  367888888754443333321 233333  34566666544  66899999


Q ss_pred             cCCCceeee-eC--CCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCC
Q 021744          217 TQTNTDLSL-SG--PVGQVYAMAVGND-LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       217 ~~~~~~~~~-~~--~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~  259 (308)
                      +.......+ ..  .-.....|++..+ ++++-...+.|...|..++
T Consensus       587 ~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          587 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             TTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             cCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCC
Confidence            976655433 22  2335678888878 6666677788998887766

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.81  E-value=0.17  Score=41.96  Aligned_cols=222  Identities=8%  Similarity=0.011  Sum_probs=110.1

Q ss_pred             eeEEecCCCeeeccCCCcEEEEECCCCCCcccccc--eeeeeeeeeeeecCCceEEeeCCCeE-EEEEcCCCceeeeEee
Q 021744           71 AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNR--AVIKTDILCRNWVQGNCMYGEKCKFL-HSWTVGDGFKLLTQLE  147 (308)
Q Consensus        71 ~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~d~~i-~iwd~~~~~~~~~~~~  147 (308)
                      .|++.+ +....++.++.|.. ..+.++.-.....  .....+..+.+.+++..+..+.++.| +..|  .+..-.....
T Consensus        84 ~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~D--gG~tW~~~~~  159 (327)
T 2xbg_A           84 SVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKD--SGKNWQALVQ  159 (327)
T ss_dssp             EEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESS--TTSSEEEEEC
T ss_pred             EEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcC--CCCCCEEeec
Confidence            677876 33433345554433 2233332211111  01122344555566666444455544 3222  2311222223


Q ss_pred             CcccceEEEEEeCCCCEEEEeeCCCcEEEEeC--CCCeEEEEEeCCCeeEEE--EcCCCEEEEEcCCcEEEEEcCCCcee
Q 021744          148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDC--ASGQCAGVINLGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDL  223 (308)
Q Consensus       148 ~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~--~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~~~~  223 (308)
                      .....+..+++.+++.+++.+...+..+-+|-  .+-+.+. ......+..+  .+++++++++.++.+.+.+...++..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW  238 (327)
T 2xbg_A          160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENW  238 (327)
T ss_dssp             SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEE
T ss_pred             CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCee
Confidence            45567889999998877766654444444442  2223331 1122333333  36777777777888777643323322


Q ss_pred             -eee----CCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEE
Q 021744          224 -SLS----GPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMF  296 (308)
Q Consensus       224 -~~~----~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~  296 (308)
                       .+.    .....+.++.+.++ .++.++.+|.| ++....+. .++.+.........+.. .|.+++.+++++.+..|+
T Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~-tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~  316 (327)
T 2xbg_A          239 GELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQ-TWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILL  316 (327)
T ss_dssp             CCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTS-SCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEE
T ss_pred             EeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCc-ccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEE
Confidence             121    12235889999876 44444456766 34444432 13333222222344555 787777766666666666


Q ss_pred             Eee
Q 021744          297 IGQ  299 (308)
Q Consensus       297 ~~~  299 (308)
                      ...
T Consensus       317 ~~~  319 (327)
T 2xbg_A          317 RYV  319 (327)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.78  E-value=0.19  Score=42.10  Aligned_cols=172  Identities=6%  Similarity=-0.029  Sum_probs=101.7

Q ss_pred             CCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC-ce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCC
Q 021744           85 FNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG-NC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS  162 (308)
Q Consensus        85 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~  162 (308)
                      ....|+..+++..+..  ........+..+.+.+.+ .+ ++....+.|+.+++... .....+.........+++++.+
T Consensus        51 ~~~~I~~i~~~g~~~~--~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~-~~~~~~~~~~~~p~glavd~~~  127 (349)
T 3v64_C           51 NRIDIRQVLPHRSEYT--LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS-NVEEVVSTGLESPGGLAVDWVH  127 (349)
T ss_dssp             CBSCEEEECTTSCCEE--EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCEEEEETTT
T ss_pred             cccceEEEeCCCCeeE--EeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCC-CceEEEeCCCCCccEEEEecCC
Confidence            3445777777543221  111111225667777554 33 45556788999998766 3322233233456789999755


Q ss_pred             CEE-EEeeCCCcEEEEeCCCCeEEEEEeCC-CeeEE--EEcCCCEEEEEc--C-CcEEEEEcCCCceeee-eCCCCCEEE
Q 021744          163 DKL-YSGSKDETVRVWDCASGQCAGVINLG-GEVGC--MISEGPWIFIGV--T-NFVKAWNTQTNTDLSL-SGPVGQVYA  234 (308)
Q Consensus       163 ~~l-~s~s~dg~v~~wd~~~~~~~~~~~~~-~~v~~--~~~~~~~l~~~~--d-~~i~~wd~~~~~~~~~-~~~~~~v~~  234 (308)
                      ..| ++-...+.|.+.++........+... .....  +.+.+..|+.+.  . +.|..+++.......+ ...-.....
T Consensus       128 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnG  207 (349)
T 3v64_C          128 DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNG  207 (349)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEE
T ss_pred             CeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcce
Confidence            554 55566788999998754433333311 22233  345566665443  4 7899998876544433 223446789


Q ss_pred             EEEeCC---EEEEEcCCCeEEEEEcCCC
Q 021744          235 MAVGND---LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       235 ~~~~~~---~l~~g~~dg~i~iwd~~~~  259 (308)
                      |+++|+   ++++-+..+.|..+|+...
T Consensus       208 la~d~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          208 LTIDYAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            999975   5555566789999998753

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.75  E-value=0.16  Score=43.98  Aligned_cols=145  Identities=8%  Similarity=-0.022  Sum_probs=86.6

Q ss_pred             eeeeeeec--CCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeC-CC----cEEEEeCCCCe
Q 021744          111 DILCRNWV--QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-DE----TVRVWDCASGQ  183 (308)
Q Consensus       111 ~~~~~~~~--~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg----~v~~wd~~~~~  183 (308)
                      ...+++.|  ++.+......+.|+.+|+.++ +. ..+.........++|++++++|+.+.. ++    .+...+.. +.
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~-~v-~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~  215 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE-YV-STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG  215 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTT-EE-EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCC-EE-EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence            45667775  344444443488999998876 33 333334566889999999996655544 22    23334432 22


Q ss_pred             EE--EEEe-CCCee-EEEEc-CCCEEEEEc-CCcEEEEEcCCCceeee--eCCCCCEEEEEEeCC---EEEEEcCCCeEE
Q 021744          184 CA--GVIN-LGGEV-GCMIS-EGPWIFIGV-TNFVKAWNTQTNTDLSL--SGPVGQVYAMAVGND---LLFAGTQDGAIL  252 (308)
Q Consensus       184 ~~--~~~~-~~~~v-~~~~~-~~~~l~~~~-d~~i~~wd~~~~~~~~~--~~~~~~v~~~~~~~~---~l~~g~~dg~i~  252 (308)
                      ..  ..+. ...+. .++.+ ++.++++-. ++.|..+|..++....+  .........++++|+   ++++-...+.|.
T Consensus       216 ~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          216 FKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             SCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence            11  2222 22222 23456 456555554 77999999987765322  122245788999998   455556778999


Q ss_pred             EEEcCC
Q 021744          253 AWKFNV  258 (308)
Q Consensus       253 iwd~~~  258 (308)
                      .++...
T Consensus       296 ~~~~d~  301 (430)
T 3tc9_A          296 RSDYDW  301 (430)
T ss_dssp             EEEEET
T ss_pred             EEeCCc
Confidence            988764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.71  E-value=0.34  Score=44.10  Aligned_cols=189  Identities=11%  Similarity=-0.029  Sum_probs=105.9

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC-ce-EEeeCCCeEEEEEcCCCceeeeEe
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG-NC-MYGEKCKFLHSWTVGDGFKLLTQL  146 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~d~~i~iwd~~~~~~~~~~~  146 (308)
                      .++|++.+..  ++=...+.|..++++...............+..+++...+ .. ++....+.|.+.++... .....+
T Consensus        44 ~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~-~~~~l~  122 (619)
T 3s94_A           44 AVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS-LRKVLF  122 (619)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEE
T ss_pred             EEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC-CEEEEE
Confidence            7899986665  5555667888888864421110111111235556666543 44 55567789999998765 222222


Q ss_pred             eCcccceEEEEEeCCCCEEEEeeC--CCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc--CCcEEEEEcCC
Q 021744          147 EGHQKVVSGITLPSGSDKLYSGSK--DETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV--TNFVKAWNTQT  219 (308)
Q Consensus       147 ~~h~~~v~~~~~~~~~~~l~s~s~--dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~--d~~i~~wd~~~  219 (308)
                      ...-.....++++|.+..|+-...  .+.|...++.......... .-.....+  .++++.|+.+.  .+.|..+|+..
T Consensus       123 ~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG  202 (619)
T 3s94_A          123 WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  202 (619)
T ss_dssp             CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred             eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence            234456789999997665554443  3566666766332222222 11222333  45566666543  66899998876


Q ss_pred             Cceeee-eCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCC
Q 021744          220 NTDLSL-SGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTT  260 (308)
Q Consensus       220 ~~~~~~-~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~  260 (308)
                      .....+ .+.......|++.++ ++.+-...+.|...|..+++
T Consensus       203 ~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          203 TNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             CEEC---------CCCEEESSSEEEEECTTTCSEEEEESSSCC
T ss_pred             CccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCc
Confidence            554422 212223457788778 66666677889999987663

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.71  E-value=0.26  Score=42.71  Aligned_cols=182  Identities=11%  Similarity=0.054  Sum_probs=104.0

Q ss_pred             eeEEecC---CCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCC-----CeEEEEEcCCCce
Q 021744           71 AKRFANN---TWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKC-----KFLHSWTVGDGFK  141 (308)
Q Consensus        71 ~i~~s~~---g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-----~~i~iwd~~~~~~  141 (308)
                      .+++.|+   +.+ ++-.. +.|+.+|.++++...  ..........+++.+++.+......     ..+...+......
T Consensus       143 gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~--~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~  219 (433)
T 4hw6_A          143 RMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDI--KTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT  219 (433)
T ss_dssp             EEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEE--ECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred             eEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEE--eecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence            7899985   555 44333 889999987664331  1112223677888888876333321     1233333332211


Q ss_pred             eeeEeeCcccceEEEEEeC-CCCEEEEeeCCCcEEEEeCCCCeEEEEE-eCC--C-e-eEEEEcCCCEEEEEc--CCcEE
Q 021744          142 LLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVI-NLG--G-E-VGCMISEGPWIFIGV--TNFVK  213 (308)
Q Consensus       142 ~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~v~~wd~~~~~~~~~~-~~~--~-~-v~~~~~~~~~l~~~~--d~~i~  213 (308)
                      ....+. .-.....++++| ++.+.++-..++.|+.+|..+++....+ ...  . . -.++.++++.|+++.  .+.|.
T Consensus       220 ~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~  298 (433)
T 4hw6_A          220 ERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIY  298 (433)
T ss_dssp             CEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             cccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEE
Confidence            111222 234456788999 6666666667789999999877663333 211  1 1 134567888666543  67899


Q ss_pred             EEEcC--CCce---eeeeCC---------------CCCEEEEEE---------eCC--EEEEEcCCCeEEEEEc
Q 021744          214 AWNTQ--TNTD---LSLSGP---------------VGQVYAMAV---------GND--LLFAGTQDGAILAWKF  256 (308)
Q Consensus       214 ~wd~~--~~~~---~~~~~~---------------~~~v~~~~~---------~~~--~l~~g~~dg~i~iwd~  256 (308)
                      .++..  ++..   ..+.+.               -.....+++         .++  ++++-...+.|+.++.
T Consensus       299 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          299 RVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             EEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             EEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence            98865  3321   112111               124677888         555  5556666788988874

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.68  E-value=0.25  Score=42.22  Aligned_cols=177  Identities=10%  Similarity=0.009  Sum_probs=105.6

Q ss_pred             eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCc-e-EEeeCCCeEEEEEcCCCc---eeeeEeeCcccceEE
Q 021744           81 RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGN-C-MYGEKCKFLHSWTVGDGF---KLLTQLEGHQKVVSG  155 (308)
Q Consensus        81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~g~~d~~i~iwd~~~~~---~~~~~~~~h~~~v~~  155 (308)
                      +.-+....|+..+++..+..  ........+..+.+.+.+. + .+....+.|+.+++....   .....+.........
T Consensus        86 ll~~~~~~I~~i~l~~~~~~--~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g  163 (400)
T 3p5b_L           86 LFFTNRHEVRKMTLDRSEYT--SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  163 (400)
T ss_dssp             EEEEETTEEEEECTTSCSCE--EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred             eEEeccceeEEEccCCccee--EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence            33344567888888655332  1111223366777876543 3 555567889888887521   122223324456788


Q ss_pred             EEEeCCCCE-EEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEE--EEcCCCEEEEEc---CCcEEEEEcCCCceeee-eC
Q 021744          156 ITLPSGSDK-LYSGSKDETVRVWDCASGQCAGVIN-LGGEVGC--MISEGPWIFIGV---TNFVKAWNTQTNTDLSL-SG  227 (308)
Q Consensus       156 ~~~~~~~~~-l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~--~~~~~~~l~~~~---d~~i~~wd~~~~~~~~~-~~  227 (308)
                      +++++.+.. .++-...+.|.+.++........+. .......  +.+.+.+|+.+.   .+.|...++.......+ ..
T Consensus       164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~  243 (400)
T 3p5b_L          164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  243 (400)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS
T ss_pred             EEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC
Confidence            999985444 4555667899999988655444443 2222333  345566665443   46899999876554433 33


Q ss_pred             CCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCC
Q 021744          228 PVGQVYAMAVGND---LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       228 ~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~  259 (308)
                      .-.....|+++++   ++++-+..+.|..+|+...
T Consensus       244 ~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          244 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence            3357899999976   4455566789999998754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.65  E-value=0.21  Score=40.83  Aligned_cols=182  Identities=11%  Similarity=0.087  Sum_probs=91.4

Q ss_pred             ecCCCe-eeccCC----CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeC----C-----CeEEEEEcCCC
Q 021744           75 ANNTWG-RNNNFN----NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEK----C-----KFLHSWTVGDG  139 (308)
Q Consensus        75 s~~g~~-~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~----d-----~~i~iwd~~~~  139 (308)
                      .-++.. +.|+.+    ..+.++|..+.+............-..+.. .++.+ +.|+.    +     ..+.+||+.+.
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            344555 666532    468888887654322111111111111222 23433 66665    2     46788998876


Q ss_pred             c-eeeeEeeCcccceEEEEEeCCCCEEEEeeCC-----CcEEEEeCCCCeEEEEEeCCC---eeEEEEcCCCEEEEEc-C
Q 021744          140 F-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKD-----ETVRVWDCASGQCAGVINLGG---EVGCMISEGPWIFIGV-T  209 (308)
Q Consensus       140 ~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-----g~v~~wd~~~~~~~~~~~~~~---~v~~~~~~~~~l~~~~-d  209 (308)
                      . +.+..+.........+.+  ++..++.|+.+     ..+.+||+.+.+-...-....   ...++..++++++.|. +
T Consensus       101 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  178 (308)
T 1zgk_A          101 QWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFD  178 (308)
T ss_dssp             EEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred             eEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCC
Confidence            2 111112211112122222  55666766643     368889988765433222111   1123334666666654 2


Q ss_pred             -----CcEEEEEcCCCceeeeeC---CCCCEEEEEEeCC-EEEEEcCC-----CeEEEEEcCCCC
Q 021744          210 -----NFVKAWNTQTNTDLSLSG---PVGQVYAMAVGND-LLFAGTQD-----GAILAWKFNVTT  260 (308)
Q Consensus       210 -----~~i~~wd~~~~~~~~~~~---~~~~v~~~~~~~~-~l~~g~~d-----g~i~iwd~~~~~  260 (308)
                           ..+.+||+.+.+-..+..   ..... +++...+ +++.|+.+     ..+.+||+.+.+
T Consensus       179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          179 GTNRLNSAECYYPERNEWRMITAMNTIRSGA-GVCVLHNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             SSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCCcCceEEEEeCCCCeEeeCCCCCCccccc-eEEEECCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence                 468999998876553221   11122 3333455 66666654     468999988764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.57  E-value=0.018  Score=53.24  Aligned_cols=173  Identities=10%  Similarity=0.002  Sum_probs=93.1

Q ss_pred             CCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCc-e-EEeeCCCeEEEEEcCCC---ceeeeEeeCcccceEEEEEe
Q 021744           85 FNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGN-C-MYGEKCKFLHSWTVGDG---FKLLTQLEGHQKVVSGITLP  159 (308)
Q Consensus        85 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~g~~d~~i~iwd~~~~---~~~~~~~~~h~~~v~~~~~~  159 (308)
                      ..+.|+..++++.+...  .......+..+.+.+.+. + ++-...+.|+.+++...   ......+.........++++
T Consensus       384 ~~~~I~~id~~~~~~~~--~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD  461 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTS--LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  461 (699)
T ss_dssp             CTTC-CEECTTSCCEEC--CSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred             CccceEEEeCCCCccee--eeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence            34567777776543321  111112345566766543 3 34445678888888751   11222222122345678888


Q ss_pred             CCC-CEEEEeeCCCcEEEEeCCCCeEEEEEeCC-CeeEE--EEcCCCEEEEEc---CCcEEEEEcCCCceeee-eCCCCC
Q 021744          160 SGS-DKLYSGSKDETVRVWDCASGQCAGVINLG-GEVGC--MISEGPWIFIGV---TNFVKAWNTQTNTDLSL-SGPVGQ  231 (308)
Q Consensus       160 ~~~-~~l~s~s~dg~v~~wd~~~~~~~~~~~~~-~~v~~--~~~~~~~l~~~~---d~~i~~wd~~~~~~~~~-~~~~~~  231 (308)
                      +.+ .++++-...+.|.+.++........+... .....  +.+.+.+|+.+.   .+.|..+++.......+ ...-..
T Consensus       462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~  541 (699)
T 1n7d_A          462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW  541 (699)
T ss_dssp             CSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSS
T ss_pred             eeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCC
Confidence            544 44455556788999998755433333211 11222  234444444332   36788887765433322 222345


Q ss_pred             EEEEEEeCC---EEEEEcCCCeEEEEEcCCC
Q 021744          232 VYAMAVGND---LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       232 v~~~~~~~~---~l~~g~~dg~i~iwd~~~~  259 (308)
                      .+.|+++|+   ++++-+..+.|..+++...
T Consensus       542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          542 PNGITLDLLSGRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred             ccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence            678999976   5566667789999998753

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.46  E-value=0.76  Score=45.08  Aligned_cols=167  Identities=13%  Similarity=0.151  Sum_probs=98.9

Q ss_pred             CeEEEEEcCCCceeeeEeeC-cccceEEEE---EeCC-CCEEEEee----------CCCcEEEEeCCCCeEEE--EEeCC
Q 021744          129 KFLHSWTVGDGFKLLTQLEG-HQKVVSGIT---LPSG-SDKLYSGS----------KDETVRVWDCASGQCAG--VINLG  191 (308)
Q Consensus       129 ~~i~iwd~~~~~~~~~~~~~-h~~~v~~~~---~~~~-~~~l~s~s----------~dg~v~~wd~~~~~~~~--~~~~~  191 (308)
                      ..|++.|..+. +.+..++- ....+.+++   |..+ ..+++.|.          ..|.|.++++..++...  ....+
T Consensus       807 s~i~lidp~t~-~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~  885 (1158)
T 3ei3_A          807 HNLLIIDQHTF-EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVK  885 (1158)
T ss_dssp             EEEEEEETTTC-CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEES
T ss_pred             EEEEEEeCCCC-eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcC
Confidence            45778887776 45444432 223444444   3322 36777765          34789999987544332  23367


Q ss_pred             CeeEEEEcCCCEEEEEcCCcEEEEEcCCCceeee--eCCCC-CEEEEEEeCCEEEEEcCCCeEEEEEcCCCCccccccee
Q 021744          192 GEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSL--SGPVG-QVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAAS  268 (308)
Q Consensus       192 ~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~--~~~~~-~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~  268 (308)
                      +.+.++..=+.+|+++-...|++|++...+.+..  ..+.. .+..+....++++.|..-..|.++..+...   ..+..
T Consensus       886 g~v~al~~~~g~Lla~ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~---~~L~~  962 (1158)
T 3ei3_A          886 GAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPME---GNFEE  962 (1158)
T ss_dssp             SCEEEEEEETTEEEEEETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTT---TEEEE
T ss_pred             CcCEEEeeeCCEEEEEcCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCC---CeEEE
Confidence            7888886544477778889999999987654421  11211 134565666788888888888877665432   22222


Q ss_pred             cc--ccCCCeEE-EEecCCCeEEEeeceEEEEee
Q 021744          269 LK--VHTDSNRA-HFSRDVTSLLGSVSFIMFIGQ  299 (308)
Q Consensus       269 ~~--~~~~~v~~-~~s~d~~~l~~s~s~~i~~~~  299 (308)
                      +.  .+..++++ .|-.++.++++=....|++..
T Consensus       963 ~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~  996 (1158)
T 3ei3_A          963 IARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQ  996 (1158)
T ss_dssp             EEECCSCBCEEEEEEEETTEEEEEETTSEEEEEE
T ss_pred             EEeecccccEEEEEEEccCcEEEEcCCCcEEEEe
Confidence            22  34556677 776666555444466666654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.34  E-value=0.44  Score=41.02  Aligned_cols=199  Identities=7%  Similarity=0.024  Sum_probs=117.4

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCc
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGH  149 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h  149 (308)
                      +.-.+|..+. |.-+ ..+++|+|+++.+.+....  ....+..-.|-.+... .--.+..|+-|++.....+.+.+.-|
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~--~~e~VvfWkWis~~~l-~lVT~taVyHWsi~~~s~P~kvFdR~  145 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLNTV-ALVTDNAVYHWSMEGESQPVKMFDRH  145 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEEEETTEE-EEECSSEEEEEESSSSCCCEEEEECC
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhccee--cCCCceEEEecCCCeE-EEEcCCeeEEecccCCCCchhheecc
Confidence            5567898888 5444 7889999998775442211  1123444444444433 22235789999998654667667655


Q ss_pred             c----cceEEEEEeCCCCEEEEee-------CCCcEEEEeCCCCeEEEEEe-CCCeeEEEEcCC-----CEEEEEc----
Q 021744          150 Q----KVVSGITLPSGSDKLYSGS-------KDETVRVWDCASGQCAGVIN-LGGEVGCMISEG-----PWIFIGV----  208 (308)
Q Consensus       150 ~----~~v~~~~~~~~~~~l~s~s-------~dg~v~~wd~~~~~~~~~~~-~~~~v~~~~~~~-----~~l~~~~----  208 (308)
                      .    ..|.....+++.++++..+       -.|.+.+|..+.+.. +.+. |......+-.++     .+++.+.    
T Consensus       146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  224 (494)
T 1bpo_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  224 (494)
T ss_dssp             GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred             hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence            3    4567777788888875433       246777888775432 2222 222222222222     2333232    


Q ss_pred             CCcEEEEEcCCC----c-----eeeee----CCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccC
Q 021744          209 TNFVKAWNTQTN----T-----DLSLS----GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHT  273 (308)
Q Consensus       209 d~~i~~wd~~~~----~-----~~~~~----~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~  273 (308)
                      .+.+++.++...    .     ...+.    ...+-..++.+++.  .+..-+.-|.|++||+.++    .++..-+-..
T Consensus       225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg----t~i~~nrIs~  300 (494)
T 1bpo_A          225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG----TCIYMNRISG  300 (494)
T ss_dssp             CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC----CEEEEEECCS
T ss_pred             CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc----eeeeeecccC
Confidence            368999988543    1     11111    22445678999988  7777788999999999998    5554444444


Q ss_pred             CCeEE
Q 021744          274 DSNRA  278 (308)
Q Consensus       274 ~~v~~  278 (308)
                      ..|-.
T Consensus       301 ~~iF~  305 (494)
T 1bpo_A          301 ETIFV  305 (494)
T ss_dssp             SCEEE
T ss_pred             CceEE
Confidence            44444

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.33  E-value=0.34  Score=39.56  Aligned_cols=181  Identities=12%  Similarity=0.088  Sum_probs=91.9

Q ss_pred             CCCe-eeccC----C-----CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCC-----CeEEEEEcCCCc
Q 021744           77 NTWG-RNNNF----N-----NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKC-----KFLHSWTVGDGF  140 (308)
Q Consensus        77 ~g~~-~s~~~----d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d-----~~i~iwd~~~~~  140 (308)
                      ++.. +.|+.    +     ..+.+||..+.+............-..+... ++.+ +.|+.+     ..+.+||+.+..
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~  148 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDE  148 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCe
Confidence            5556 77765    2     4578888876542211111111111112222 4444 666543     467889988762


Q ss_pred             -eeeeEeeCcccceEEEEEeCCCCEEEEeeCC-----CcEEEEeCCCCeEEEEEeCCC---eeEEEEcCCCEEEEEc-C-
Q 021744          141 -KLLTQLEGHQKVVSGITLPSGSDKLYSGSKD-----ETVRVWDCASGQCAGVINLGG---EVGCMISEGPWIFIGV-T-  209 (308)
Q Consensus       141 -~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-----g~v~~wd~~~~~~~~~~~~~~---~v~~~~~~~~~l~~~~-d-  209 (308)
                       +.+..+......- +++.. ++..++.|+.+     ..+.+||+.+.+-...-....   ...++..++++++.|. + 
T Consensus       149 W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~  226 (308)
T 1zgk_A          149 WHLVAPMLTRRIGV-GVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDG  226 (308)
T ss_dssp             EEECCCCSSCCBSC-EEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred             EeECCCCCccccce-EEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCC
Confidence             1111122111111 22222 56666777654     468899988765432211111   1223344677767664 3 


Q ss_pred             ----CcEEEEEcCCCceeeeeCCCC--CEEEEEEeCC-EEEEEcCC-----CeEEEEEcCCCC
Q 021744          210 ----NFVKAWNTQTNTDLSLSGPVG--QVYAMAVGND-LLFAGTQD-----GAILAWKFNVTT  260 (308)
Q Consensus       210 ----~~i~~wd~~~~~~~~~~~~~~--~v~~~~~~~~-~l~~g~~d-----g~i~iwd~~~~~  260 (308)
                          ..+.+||+.+.+-..+.....  .-.+++...+ +++.|+.+     ..+.+||+.+.+
T Consensus       227 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          227 QDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             SSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence                468999999886553322111  1123334455 66666643     357888887753

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.26  E-value=0.35  Score=39.17  Aligned_cols=171  Identities=13%  Similarity=0.140  Sum_probs=87.9

Q ss_pred             CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCC-----CeEEEEEcCCCc----eeeeEeeCcccceEEE
Q 021744           87 NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKC-----KFLHSWTVGDGF----KLLTQLEGHQKVVSGI  156 (308)
Q Consensus        87 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d-----~~i~iwd~~~~~----~~~~~~~~h~~~v~~~  156 (308)
                      ..+.++|..+.+............-..+. ..++.+ +.|+.+     ..+.+||+.+..    +.+..+....... ++
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~-~~  108 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA-GA  108 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC-EE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce-eE
Confidence            35778887655422111111111111122 223433 667654     468899988762    1222222111222 22


Q ss_pred             EEeCCCCEEEEeeCC-----CcEEEEeCCCCeEEEEEeCCC---eeEEEEcCCCEEEEEc-C-----CcEEEEEcCCCce
Q 021744          157 TLPSGSDKLYSGSKD-----ETVRVWDCASGQCAGVINLGG---EVGCMISEGPWIFIGV-T-----NFVKAWNTQTNTD  222 (308)
Q Consensus       157 ~~~~~~~~l~s~s~d-----g~v~~wd~~~~~~~~~~~~~~---~v~~~~~~~~~l~~~~-d-----~~i~~wd~~~~~~  222 (308)
                      +.. ++..++.|+.+     ..+.+||+.+.+-...-....   ...++..++++++.|. +     ..+.+||+.+.+-
T Consensus       109 ~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W  187 (301)
T 2vpj_A          109 TTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHW  187 (301)
T ss_dssp             EEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred             EEE-CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcE
Confidence            222 56666777654     368899988876443322211   1223345677766654 2     4688999988865


Q ss_pred             eeeeCCC--CCEEEEEEeCC-EEEEEcCC-----CeEEEEEcCCCC
Q 021744          223 LSLSGPV--GQVYAMAVGND-LLFAGTQD-----GAILAWKFNVTT  260 (308)
Q Consensus       223 ~~~~~~~--~~v~~~~~~~~-~l~~g~~d-----g~i~iwd~~~~~  260 (308)
                      ..+....  ..-.+++...+ +++.|+.+     ..+.+||+.+.+
T Consensus       188 ~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          188 TNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             EEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             EeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence            5332111  11123334455 66666654     468999998764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.16  E-value=0.87  Score=42.69  Aligned_cols=173  Identities=10%  Similarity=0.020  Sum_probs=100.0

Q ss_pred             CCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC-ce-EEeeCCCeEEEEEcCCCc---eeeeEeeCcccceEEEEEe
Q 021744           85 FNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG-NC-MYGEKCKFLHSWTVGDGF---KLLTQLEGHQKVVSGITLP  159 (308)
Q Consensus        85 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~d~~i~iwd~~~~~---~~~~~~~~h~~~v~~~~~~  159 (308)
                      ....|+..++...+..  .+......+..+.+.+.. .+ ++....+.|+.+++....   .....+.........|+++
T Consensus       402 n~~~Ir~i~l~~~~~~--~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD  479 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYT--SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  479 (791)
T ss_dssp             CBSSEEEECTTSCCCE--EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             cccceeEeeccCCcce--eeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence            3455777776544321  111112235566676643 33 555566788888886421   1122233244566789999


Q ss_pred             CCCCEE-EEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc---CCcEEEEEcCCCceeeee-CCCCC
Q 021744          160 SGSDKL-YSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV---TNFVKAWNTQTNTDLSLS-GPVGQ  231 (308)
Q Consensus       160 ~~~~~l-~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~---d~~i~~wd~~~~~~~~~~-~~~~~  231 (308)
                      +.+..| ++-...+.|.+.++........+. .......+  .+.+.+|+.+.   .+.|...++.......+. ..-..
T Consensus       480 ~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~  559 (791)
T 3m0c_C          480 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW  559 (791)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC
T ss_pred             ecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCC
Confidence            877555 555667899999988554433333 22223333  45555555443   368999998876555333 33457


Q ss_pred             EEEEEEeCC---EEEEEcCCCeEEEEEcCCC
Q 021744          232 VYAMAVGND---LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       232 v~~~~~~~~---~l~~g~~dg~i~iwd~~~~  259 (308)
                      ...|++.+.   ++++=...+.|..+++...
T Consensus       560 P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          560 PNGITLDLLSGRLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence            899999965   4444456678999998764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.15  E-value=0.43  Score=39.10  Aligned_cols=184  Identities=11%  Similarity=0.025  Sum_probs=90.0

Q ss_pred             EecCCCe-eeccC----CC-------cEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCC-------CeEEE
Q 021744           74 FANNTWG-RNNNF----NN-------HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKC-------KFLHS  133 (308)
Q Consensus        74 ~s~~g~~-~s~~~----d~-------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d-------~~i~i  133 (308)
                      ...++.. +.|+.    ++       .+.++|..+.+............-..+... ++.+ +.|+.+       ..+.+
T Consensus        53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~  131 (318)
T 2woz_A           53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLC  131 (318)
T ss_dssp             ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred             EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-CCEEEEEcCccCCCCcccceEEE
Confidence            3456666 77763    11       166778765543221111111111112222 3433 677654       35788


Q ss_pred             EEcCCCc-eeeeEeeCcccceEEEEEeCCCCEEEEeeC------CCcEEEEeCCCCeEEEEEeCCC---eeEEEEcCCCE
Q 021744          134 WTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSK------DETVRVWDCASGQCAGVINLGG---EVGCMISEGPW  203 (308)
Q Consensus       134 wd~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~------dg~v~~wd~~~~~~~~~~~~~~---~v~~~~~~~~~  203 (308)
                      ||+.+.. +.+..+...... .+++. .++..++.|+.      -..+.+||+.+.+-...-....   ...+...++++
T Consensus       132 yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i  209 (318)
T 2woz_A          132 YDPVAAKWSEVKNLPIKVYG-HNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKI  209 (318)
T ss_dssp             EETTTTEEEEECCCSSCEES-CEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEE
T ss_pred             EeCCCCCEeECCCCCCcccc-cEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEE
Confidence            8988762 111111111111 12222 35566666654      2358999998875433222111   12333456777


Q ss_pred             EEEEc-C-----CcEEEEEcCCCceeeeeCCC--CCEEEEEEeCC-EEEEEcCC--------------CeEEEEEcCCCC
Q 021744          204 IFIGV-T-----NFVKAWNTQTNTDLSLSGPV--GQVYAMAVGND-LLFAGTQD--------------GAILAWKFNVTT  260 (308)
Q Consensus       204 l~~~~-d-----~~i~~wd~~~~~~~~~~~~~--~~v~~~~~~~~-~l~~g~~d--------------g~i~iwd~~~~~  260 (308)
                      ++.|. +     ..+.+||+.+.+-..+....  ..-.+++...+ +++.|+.+              ..+.+||+.+.+
T Consensus       210 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          210 VIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             EEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             EEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence            66654 2     35778999887655332211  11123444455 66666643              357788887753

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.12  E-value=0.49  Score=39.47  Aligned_cols=171  Identities=13%  Similarity=0.187  Sum_probs=97.7

Q ss_pred             EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCC----CC---EEEEee-C--CCcEEEEeC--CCCeEEEEEeC
Q 021744          123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG----SD---KLYSGS-K--DETVRVWDC--ASGQCAGVINL  190 (308)
Q Consensus       123 ~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~----~~---~l~s~s-~--dg~v~~wd~--~~~~~~~~~~~  190 (308)
                      +...+.+-+.+||+ ++ +.++.+..  +.+..+.+-|+    ++   ++++.. .  +++|.+|++  .+++ +..+..
T Consensus        44 i~t~k~~gL~Vydl-~G-~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~  118 (355)
T 3amr_A           44 ITTNKKSGLVVYSL-DG-KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTD  118 (355)
T ss_dssp             EEEETTTEEEEEET-TS-CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSC
T ss_pred             EEEcCCCCEEEEcC-CC-cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccc
Confidence            45566788999999 66 56777753  55666666552    22   233333 3  578999976  3443 444421


Q ss_pred             ---------CCee-EEEE--c-CCC-EEEEEc-CCcEEEEEcC---CC----cee-eeeCCCCCEEEEEEeCC--EEEEE
Q 021744          191 ---------GGEV-GCMI--S-EGP-WIFIGV-TNFVKAWNTQ---TN----TDL-SLSGPVGQVYAMAVGND--LLFAG  245 (308)
Q Consensus       191 ---------~~~v-~~~~--~-~~~-~l~~~~-d~~i~~wd~~---~~----~~~-~~~~~~~~v~~~~~~~~--~l~~g  245 (308)
                               ..+. .|+.  + .++ ++++.. ++.+..|++.   .+    +.+ ++. ..+.+..+...+.  .|+.+
T Consensus       119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~g~Lyv~  197 (355)
T 3amr_A          119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEYGRLYIA  197 (355)
T ss_dssp             TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTTTEEEEE
T ss_pred             cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCCCeEEEe
Confidence                     1111 3452  3 344 455555 8899888883   33    233 333 3457888999887  89999


Q ss_pred             cCCCeEEEEEcCCCCc-ccccceecc-cc-CCCeEE-EE--ecCCC-eEEEee----ceEEEEee
Q 021744          246 TQDGAILAWKFNVTTN-CFEPAASLK-VH-TDSNRA-HF--SRDVT-SLLGSV----SFIMFIGQ  299 (308)
Q Consensus       246 ~~dg~i~iwd~~~~~~-~~~~~~~~~-~~-~~~v~~-~~--s~d~~-~l~~s~----s~~i~~~~  299 (308)
                      -++.-|..++.+.... ..+.+..+. ++ ...+.. ++  .++++ +|++|+    +..+|-..
T Consensus       198 eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          198 EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             ETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             cccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            9987766666543210 013333332 21 124444 44  56666 788777    55555554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.98  E-value=0.053  Score=45.23  Aligned_cols=186  Identities=6%  Similarity=-0.095  Sum_probs=92.9

Q ss_pred             CceEEecCCCeEEEeecCCCCC-CCCCcccccCCCCCCccccccceeEEecCCCe-eec-cCCCcEEEEECCCCCCcccc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNR-FPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNN-NFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~-~~d~~i~vwd~~~~~~~~~~  103 (308)
                      .+++.++.|+.|.-.|..+++. +..+.-    .. .|........  ...++.. +.. +.||.|..++.+++....  
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~----~~-~p~~~~~~~~--~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~--   81 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPE----NF-QPLIEIQEPS--RLETYETLIIEPFGDGNIYYFNAHQGLQKL--   81 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGG----GS-CCSEECCCSC--TTTSSEEEEECCSTTTEEEEEETTTEEEEE--
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCC----cc-CCcEEecCCc--cccCCcEEEEEECCCCEEEEEECCCCcEEe--
Confidence            4688899999999999887731 111110    00 1111100000  0012223 333 578888878776552210  


Q ss_pred             cceeeeee--eeeee------------ecCCceEEeeCCCeEEEEEcCCCceeeeEeeCccc-c------eEEEEEe---
Q 021744          104 NRAVIKTD--ILCRN------------WVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK-V------VSGITLP---  159 (308)
Q Consensus       104 ~~~~~~~~--~~~~~------------~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~-~------v~~~~~~---  159 (308)
                      .......+  ..+..            +.++..++|+.++.+...|+.++ +.+.++..... .      ..|....   
T Consensus        82 ~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG-~~~W~~~~~~~~~~~~~~~e~~~~~~d~~  160 (339)
T 2be1_A           82 PLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG-EIISAFGPGSKNGYFGSQSVDCSPEEKIK  160 (339)
T ss_dssp             EEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTC-CEEEEESTTCBCC----------------
T ss_pred             eeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCC-cEEEEEecCCCcccccccccccccccccc
Confidence            00000001  01111            13456688999999999999999 77777753211 0      1111111   


Q ss_pred             --CCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-----CCCe---eE---EEEcCCCEEEEEcCCcEEEEEcCCCceee
Q 021744          160 --SGSDKLYSGSKDETVRVWDCASGQCAGVIN-----LGGE---VG---CMISEGPWIFIGVTNFVKAWNTQTNTDLS  224 (308)
Q Consensus       160 --~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-----~~~~---v~---~~~~~~~~l~~~~d~~i~~wd~~~~~~~~  224 (308)
                        ..+..++.+..+..+.+.+ ++++ +..+.     ....   +.   ....++.++++..|+.|.-+|..+++.+.
T Consensus       161 ~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          161 LQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             ----CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTCCEEE
T ss_pred             cccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCCcEEE
Confidence              1235677777777777766 4554 32221     0000   00   00123566666668888888888777654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.79  E-value=0.96  Score=44.95  Aligned_cols=185  Identities=8%  Similarity=0.035  Sum_probs=104.2

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCc
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGH  149 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h  149 (308)
                      +.-.+|..+. |.-+ ..+++|+|+++.+.+.....  ...|..-.|-..... .--.+..|+-|++.....+.+.+.-|
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~--~e~VvfWkWis~~~l-~lVT~~aVyHW~~~~~s~P~k~fdR~  145 (1630)
T 1xi4_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM--TDDVTFWKWISLNTV-ALVTDNAVYHWSMEGESQPVKMFDRH  145 (1630)
T ss_pred             hhccCCCcceEEEec-CCeEEEeehHHhhhhccccc--CCCceEEEecCCCee-EEEcCCeEEEeccCCCCccHHHHhcc
Confidence            4566888887 4443 78899999987655532221  223444444444333 11235679999997543555555444


Q ss_pred             ----ccceEEEEEeCCCCEEEEee-------CCCcEEEEeCCCCeEEEEEe-CCCeeEEEE-----cCCCEEEEEc----
Q 021744          150 ----QKVVSGITLPSGSDKLYSGS-------KDETVRVWDCASGQCAGVIN-LGGEVGCMI-----SEGPWIFIGV----  208 (308)
Q Consensus       150 ----~~~v~~~~~~~~~~~l~s~s-------~dg~v~~wd~~~~~~~~~~~-~~~~v~~~~-----~~~~~l~~~~----  208 (308)
                          ...|..-..+++.++++..+       -.|.+.+|..+.+... .+. |......+-     .+..+++.+.    
T Consensus       146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ-~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~  224 (1630)
T 1xi4_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  224 (1630)
T ss_pred             hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch-hhhHhHhhhheeccCCCCCCceEEEEEEecCC
Confidence                34567777788888865333       3467778876643221 111 111111111     1122333222    


Q ss_pred             CCcEEEEEcCCC----cee-----e--ee--CCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCC
Q 021744          209 TNFVKAWNTQTN----TDL-----S--LS--GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT  260 (308)
Q Consensus       209 d~~i~~wd~~~~----~~~-----~--~~--~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~  260 (308)
                      .+.+++.++...    ...     .  +.  ...+-..++..++.  .+..-+.-|.|.+||+.++.
T Consensus       225 g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~  291 (1630)
T 1xi4_A          225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT  291 (1630)
T ss_pred             CceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccch
Confidence            258888887543    111     1  11  12334567888887  66677888999999999983

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.59  E-value=0.8  Score=37.79  Aligned_cols=220  Identities=9%  Similarity=-0.040  Sum_probs=108.2

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccc---eeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEe
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNR---AVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQL  146 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~  146 (308)
                      +|.|.+.+.. + ++.++.| +...+.++.-.....   .....+..+.+.+ +.....+..+.|+. ....+ +.-...
T Consensus        40 ~v~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG-~tW~~~  114 (327)
T 2xbg_A           40 DMSFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGG-QSWSQI  114 (327)
T ss_dssp             EEEESSSSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEEEE-ESSTT-SSCEEC
T ss_pred             EEEECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeEEE-ECCCC-CCceEC
Confidence            5677666666 6 4556655 333333432211111   1122355666655 44444455665543 22223 222222


Q ss_pred             e---CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe--CCCeeEEE--EcCCCEEEEEcCCcEEEE-Ec-
Q 021744          147 E---GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN--LGGEVGCM--ISEGPWIFIGVTNFVKAW-NT-  217 (308)
Q Consensus       147 ~---~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~--~~~~v~~~--~~~~~~l~~~~d~~i~~w-d~-  217 (308)
                      .   .+...+..+.+.+++..++.+ .++.|..- ...++.-....  ....+..+  .+++.+++++..+.+..- |- 
T Consensus       115 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g  192 (327)
T 2xbg_A          115 PLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG  192 (327)
T ss_dssp             CCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT
T ss_pred             ccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC
Confidence            1   233457778777666555544 45644321 12233333332  22334443  367788888877765443 32 


Q ss_pred             -CCCceeeeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceec-cccCCCeEE-EEecCCCeEEEeece
Q 021744          218 -QTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASL-KVHTDSNRA-HFSRDVTSLLGSVSF  293 (308)
Q Consensus       218 -~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~-~~s~d~~~l~~s~s~  293 (308)
                       .+.+.+. ......+..+.+.++ .+...+.+|.+++.+...+.. ++.+..- ..+...+.. .+.+++.+++++...
T Consensus       193 G~tW~~~~-~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~t-W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g  270 (327)
T 2xbg_A          193 QTAWEPHN-RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSEN-WGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAG  270 (327)
T ss_dssp             CSSCEEEE-CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEE-ECCCBCTTSSCCSCEEEEEESSSSCEEEEESTT
T ss_pred             CCceeECC-CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCe-eEeccCCcccCCcceEEEEecCCCEEEEEeCCC
Confidence             2223332 234557888999888 555566788887764322210 1222111 012234566 788887777766555


Q ss_pred             EEEEee
Q 021744          294 IMFIGQ  299 (308)
Q Consensus       294 ~i~~~~  299 (308)
                      .+|...
T Consensus       271 ~i~~S~  276 (327)
T 2xbg_A          271 ALLCSQ  276 (327)
T ss_dssp             CEEEES
T ss_pred             eEEEeC
Confidence            555443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.45  E-value=1.1  Score=38.46  Aligned_cols=100  Identities=9%  Similarity=0.060  Sum_probs=68.2

Q ss_pred             eCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCC----C-ee--EEEEcCCCEEEEEcCCcEEEEEcCCCc----------
Q 021744          159 PSGSDKLYSGSKDETVRVWDCASGQCAGVINLG----G-EV--GCMISEGPWIFIGVTNFVKAWNTQTNT----------  221 (308)
Q Consensus       159 ~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~----~-~v--~~~~~~~~~l~~~~d~~i~~wd~~~~~----------  221 (308)
                      ..++..++.+- ++.||.-++.....-+.++.+    . .+  ..+.++|++|+..++..|.+..+..+.          
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence            34555555543 377888887754444445433    1 23  334688999999999999999887331          


Q ss_pred             ---eeeeeC------CCCCEEEEEEeCC-----EEEEEcCCCeEEEEEcCCC
Q 021744          222 ---DLSLSG------PVGQVYAMAVGND-----LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       222 ---~~~~~~------~~~~v~~~~~~~~-----~l~~g~~dg~i~iwd~~~~  259 (308)
                         +..+.-      ...+|..+.|+|-     .|++-..|+.|++||+...
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s  159 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS  159 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence               111111      3568999999996     7888899999999999863

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.42  E-value=0.84  Score=36.93  Aligned_cols=139  Identities=16%  Similarity=0.177  Sum_probs=74.1

Q ss_pred             CCce-EEeeCC-----CeEEEEEcCCCc-eeeeEeeCcccceEEEEEeCCCCEEEEeeCCC-----cEEEEeCCCCeEEE
Q 021744          119 QGNC-MYGEKC-----KFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE-----TVRVWDCASGQCAG  186 (308)
Q Consensus       119 ~~~~-~~g~~d-----~~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg-----~v~~wd~~~~~~~~  186 (308)
                      ++.+ +.|+.+     ..+.+||+.+.. +.+..+...... .+++.. ++..++.|+.++     .+.+||+.+.+-..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST-LGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc-eEEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            4433 667644     358889988762 111122211111 122222 456667776553     57788988775433


Q ss_pred             EEeCCC---eeEEEEcCCCEEEEEc-C-------CcEEEEEcCCCceeeee---CCCCCEEEEEEeCC-EEEEEcCC---
Q 021744          187 VINLGG---EVGCMISEGPWIFIGV-T-------NFVKAWNTQTNTDLSLS---GPVGQVYAMAVGND-LLFAGTQD---  248 (308)
Q Consensus       187 ~~~~~~---~v~~~~~~~~~l~~~~-d-------~~i~~wd~~~~~~~~~~---~~~~~v~~~~~~~~-~l~~g~~d---  248 (308)
                      .-....   ...+...++++++.|. +       ..+.+||+.+.+-..+.   ..... .+++...+ +++.|+.+   
T Consensus       139 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~  217 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSG-AGVGVLNNLLYAVGGHDGPL  217 (302)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCBSSSS
T ss_pred             cCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccccc-ccEEEECCEEEEECCCCCCc
Confidence            322111   1223345666666654 2       35889999887655322   11112 23344455 66666654   


Q ss_pred             --CeEEEEEcCCCC
Q 021744          249 --GAILAWKFNVTT  260 (308)
Q Consensus       249 --g~i~iwd~~~~~  260 (308)
                        ..+.+||+.+.+
T Consensus       218 ~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          218 VRKSVEVYDPTTNA  231 (302)
T ss_dssp             BCCCEEEEETTTTE
T ss_pred             ccceEEEEeCCCCC
Confidence              368899988754

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.29  E-value=0.97  Score=36.88  Aligned_cols=176  Identities=9%  Similarity=0.043  Sum_probs=86.4

Q ss_pred             eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeC-----------CCeEEEEEcCCCc-eeeeEee
Q 021744           81 RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEK-----------CKFLHSWTVGDGF-KLLTQLE  147 (308)
Q Consensus        81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~-----------d~~i~iwd~~~~~-~~~~~~~  147 (308)
                      +.|+  ..+.+||..+.+....................++.+ +.|+.           ...+.+||+.+.. +.+..+.
T Consensus         9 ~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p   86 (315)
T 4asc_A            9 MISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLP   86 (315)
T ss_dssp             EEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBS
T ss_pred             EEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCC
Confidence            4455  568888887665321111111011111222234444 66663           1237788888762 1111111


Q ss_pred             CcccceEEEEEeCCCCEEEEeeCC--------CcEEEEeCCCCeEEEEEeCCC---eeEEEEcCCCEEEEEcC-------
Q 021744          148 GHQKVVSGITLPSGSDKLYSGSKD--------ETVRVWDCASGQCAGVINLGG---EVGCMISEGPWIFIGVT-------  209 (308)
Q Consensus       148 ~h~~~v~~~~~~~~~~~l~s~s~d--------g~v~~wd~~~~~~~~~~~~~~---~v~~~~~~~~~l~~~~d-------  209 (308)
                      ..... .+++.. ++..++.|+.+        ..+.+||..+.+-...-..+.   ...++..++++++.|..       
T Consensus        87 ~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  164 (315)
T 4asc_A           87 SPRCL-FGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL  164 (315)
T ss_dssp             SCEES-CEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBC
T ss_pred             cchhc-eeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCccc
Confidence            11111 122222 45666666632        468899998875332211111   12233456666666542       


Q ss_pred             CcEEEEEcCCCceeeeeCCC--CCEEEEEEeCC-EEEEEcCCC-----eEEEEEcCCCC
Q 021744          210 NFVKAWNTQTNTDLSLSGPV--GQVYAMAVGND-LLFAGTQDG-----AILAWKFNVTT  260 (308)
Q Consensus       210 ~~i~~wd~~~~~~~~~~~~~--~~v~~~~~~~~-~l~~g~~dg-----~i~iwd~~~~~  260 (308)
                      ..+.+||+.+.+-..+....  ..-.+++...+ +++.|+.++     .+.+||+.+.+
T Consensus       165 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          165 NKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             ceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCe
Confidence            46899999887655332111  11123334455 566665543     58888888754

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.25  E-value=1.1  Score=37.12  Aligned_cols=147  Identities=8%  Similarity=-0.013  Sum_probs=90.5

Q ss_pred             eeeeeecC-CceEEee-CCCeEEEEEcCCCceeee-EeeC----c--ccceEEEEE---eCCCCEEEEee----------
Q 021744          112 ILCRNWVQ-GNCMYGE-KCKFLHSWTVGDGFKLLT-QLEG----H--QKVVSGITL---PSGSDKLYSGS----------  169 (308)
Q Consensus       112 ~~~~~~~~-~~~~~g~-~d~~i~iwd~~~~~~~~~-~~~~----h--~~~v~~~~~---~~~~~~l~s~s----------  169 (308)
                      .+..|.+. +.+..++ ..+.|..|+...+ .... .+.+    .  ...+..+.|   .|++++++...          
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~-~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQ-SHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTC-CEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCC-eEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            34455543 4444444 7899999999755 2222 2222    1  114578999   68877776543          


Q ss_pred             ---CCCcEEEEeCC---CCeEEEEEeCC----C----------eeEEE--EcCCCEEEEEc-C-CcEEEEEcCCCceeee
Q 021744          170 ---KDETVRVWDCA---SGQCAGVINLG----G----------EVGCM--ISEGPWIFIGV-T-NFVKAWNTQTNTDLSL  225 (308)
Q Consensus       170 ---~dg~v~~wd~~---~~~~~~~~~~~----~----------~v~~~--~~~~~~l~~~~-d-~~i~~wd~~~~~~~~~  225 (308)
                         .+..|..+|+.   +++.+......    +          ....+  -++|+..++++ . +.|...+........+
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~  174 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTF  174 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEE
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeee
Confidence               26789999999   88877766521    1          13333  36677777665 6 7777776664433321


Q ss_pred             e--C----CCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744          226 S--G----PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       226 ~--~----~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~  259 (308)
                      .  .    .....+.|+++|+  .|++....|.+..+|+...
T Consensus       175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            1  1    1123678999998  5555555999999998853

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.13  E-value=1.2  Score=37.03  Aligned_cols=130  Identities=13%  Similarity=0.008  Sum_probs=60.5

Q ss_pred             CeEEEEEcCCCc-eeeeEeeCcccceEEEEEeCCCCEEEEeeC------CCcEEEEeC--CCCeEEEEEeC--CC---ee
Q 021744          129 KFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSK------DETVRVWDC--ASGQCAGVINL--GG---EV  194 (308)
Q Consensus       129 ~~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~------dg~v~~wd~--~~~~~~~~~~~--~~---~v  194 (308)
                      ..+.+||+.+.. +.+..+......-.+++.. ++..++.|+.      ...+..+|+  .+.+-...-..  ..   ..
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence            578899998762 1222222111111233333 4556666654      345777877  43332211111  11   12


Q ss_pred             EEEEcCCCEEEEEc-C----------------------CcEEEEEcCCCceeee---eCCCCCEEEEEEeCC-EEEEEcC
Q 021744          195 GCMISEGPWIFIGV-T----------------------NFVKAWNTQTNTDLSL---SGPVGQVYAMAVGND-LLFAGTQ  247 (308)
Q Consensus       195 ~~~~~~~~~l~~~~-d----------------------~~i~~wd~~~~~~~~~---~~~~~~v~~~~~~~~-~l~~g~~  247 (308)
                      .+...++++++.|. +                      ..+.+||+.+.+-..+   ........++ ...+ +++.|+.
T Consensus       247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~  325 (357)
T 2uvk_A          247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL-PWNNSLLIIGGE  325 (357)
T ss_dssp             EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE-EETTEEEEEEEE
T ss_pred             eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE-EeCCEEEEEeee
Confidence            24456677777654 2                      2577999987754422   2222222233 3344 6666664


Q ss_pred             CC------eEEEEEcCCCC
Q 021744          248 DG------AILAWKFNVTT  260 (308)
Q Consensus       248 dg------~i~iwd~~~~~  260 (308)
                      ++      .|.++++++++
T Consensus       326 ~~~~~~~~~v~~l~~~~~~  344 (357)
T 2uvk_A          326 TAGGKAVTDSVLITVKDNK  344 (357)
T ss_dssp             CGGGCEEEEEEEEEC-CCS
T ss_pred             CCCCCEeeeEEEEEEcCcE
Confidence            42      36666888763

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.07  E-value=1.6  Score=38.30  Aligned_cols=146  Identities=5%  Similarity=0.004  Sum_probs=85.4

Q ss_pred             eeeeeeecC--Cce-EEeeCCCeEEEEEcCCCceeeeEeeC---cccceEEEEE-------eCCCCEEEEeeCCC-----
Q 021744          111 DILCRNWVQ--GNC-MYGEKCKFLHSWTVGDGFKLLTQLEG---HQKVVSGITL-------PSGSDKLYSGSKDE-----  172 (308)
Q Consensus       111 ~~~~~~~~~--~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~---h~~~v~~~~~-------~~~~~~l~s~s~dg-----  172 (308)
                      ...+++.|.  +.+ ++....+.|++.|++++ .....+..   .......++|       ++++.+|+.+...+     
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~-~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR-MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTT-EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCC-EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            456677763  334 44344467888998886 33332322   1235889999       99998666665543     


Q ss_pred             --cEEEEeCCC-Ce--------EEEEEeCCCeeEEEEcCCCEEE-EEc-CCcEEEEEcC-------CCce----------
Q 021744          173 --TVRVWDCAS-GQ--------CAGVINLGGEVGCMISEGPWIF-IGV-TNFVKAWNTQ-------TNTD----------  222 (308)
Q Consensus       173 --~v~~wd~~~-~~--------~~~~~~~~~~v~~~~~~~~~l~-~~~-d~~i~~wd~~-------~~~~----------  222 (308)
                        .|.+.+... ++        .+..+.+.. -.++.+++..|+ +-. ++.|..+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~-giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCN-GATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCC-CEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCce-EEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              266665333 22        222222222 123456445444 444 7789999987       5543          


Q ss_pred             -e-e-e-eCCCCCEEEEEEeCC--E-EEEEcCCCeEEEEEcCC
Q 021744          223 -L-S-L-SGPVGQVYAMAVGND--L-LFAGTQDGAILAWKFNV  258 (308)
Q Consensus       223 -~-~-~-~~~~~~v~~~~~~~~--~-l~~g~~dg~i~iwd~~~  258 (308)
                       . . + .+.....+.|+|+|+  + +++-+..+.|+.++...
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence             1 1 1 122345689999998  3 55556778899977653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.06  E-value=0.095  Score=43.67  Aligned_cols=103  Identities=12%  Similarity=0.127  Sum_probs=66.5

Q ss_pred             CceEEeeCCCeEEEEEcCCCceeeeEeeCc-ccceEEEEEe--C-CCCEEEEe-eCCCcEEEEeCCCCeEEEEEeCC---
Q 021744          120 GNCMYGEKCKFLHSWTVGDGFKLLTQLEGH-QKVVSGITLP--S-GSDKLYSG-SKDETVRVWDCASGQCAGVINLG---  191 (308)
Q Consensus       120 ~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h-~~~v~~~~~~--~-~~~~l~s~-s~dg~v~~wd~~~~~~~~~~~~~---  191 (308)
                      +..+.++.||.|+-.|..++ +.+.+++.. ..++....-.  + ++..++.. +.||.+..++.++|.....+..+   
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG-~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNG-HIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTT-EEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCC-cEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            44578899999999999999 777777643 1222221111  1 22333333 68999999999998766655521   


Q ss_pred             --CeeEE----EE------cCCCEEEEEc-CCcEEEEEcCCCcee
Q 021744          192 --GEVGC----MI------SEGPWIFIGV-TNFVKAWNTQTNTDL  223 (308)
Q Consensus       192 --~~v~~----~~------~~~~~l~~~~-d~~i~~wd~~~~~~~  223 (308)
                        .+...    +.      ..+..+++|+ ++++...|+++|+.+
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~  134 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEII  134 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEE
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEE
Confidence              22221    01      1445556655 999999999999988

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=94.96  E-value=1.8  Score=38.10  Aligned_cols=187  Identities=9%  Similarity=-0.017  Sum_probs=104.3

Q ss_pred             eeEE-------ecCCCe-eeccCCC-------cEEEEECCC-CCCcc-c--ccceeeeeeeeeeeecC-Cce-EEeeCCC
Q 021744           71 AKRF-------ANNTWG-RNNNFNN-------HSNNYRAGN-SKNSN-I--NNRAVIKTDILCRNWVQ-GNC-MYGEKCK  129 (308)
Q Consensus        71 ~i~~-------s~~g~~-~s~~~d~-------~i~vwd~~~-~~~~~-~--~~~~~~~~~~~~~~~~~-~~~-~~g~~d~  129 (308)
                      .++|       +++|.. +.+...+       .|.+.+... ++... .  .....-.....++..++ +.+ ++...++
T Consensus       190 ~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g  269 (496)
T 3kya_A          190 SIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKG  269 (496)
T ss_dssp             EEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTT
T ss_pred             EEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCC
Confidence            7999       999995 4444332       255665443 22210 0  01111122456677774 444 5566788


Q ss_pred             eEEEEEcC-------CCcee-----------eeEe-e-CcccceEEEEEeCCCCEE-EEeeCCCcEEEEeC--CCCeEE-
Q 021744          130 FLHSWTVG-------DGFKL-----------LTQL-E-GHQKVVSGITLPSGSDKL-YSGSKDETVRVWDC--ASGQCA-  185 (308)
Q Consensus       130 ~i~iwd~~-------~~~~~-----------~~~~-~-~h~~~v~~~~~~~~~~~l-~s~s~dg~v~~wd~--~~~~~~-  185 (308)
                      .|..+|+.       ++ ..           ...+ . +.......++|+|+++.| ++=+....|+.++.  .++... 
T Consensus       270 ~V~r~d~~~~~~~~~tg-~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~  348 (496)
T 3kya_A          270 QVFRLDLVDYFKTIKNG-GSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFIT  348 (496)
T ss_dssp             EEEEECHHHHHHHHHTT-CCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECC
T ss_pred             EEEEEecccccccccCc-eeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecc
Confidence            89999987       45 22           1121 1 123446799999999954 55556778888554  333321 


Q ss_pred             -EEEe-C----------------CCee-EEEE--------cCCCEEEEEc-CCcEEEEEcCCCceeeeeCC---------
Q 021744          186 -GVIN-L----------------GGEV-GCMI--------SEGPWIFIGV-TNFVKAWNTQTNTDLSLSGP---------  228 (308)
Q Consensus       186 -~~~~-~----------------~~~v-~~~~--------~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~---------  228 (308)
                       ..+. .                ..+. ..+.        .++.++++-. ++.|+.++ .++...++.+.         
T Consensus       349 ~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~  427 (496)
T 3kya_A          349 PYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADG  427 (496)
T ss_dssp             CEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHS
T ss_pred             cEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCc
Confidence             2221 1                1222 1222        2344444444 77999998 45554444321         


Q ss_pred             ---------------CCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCC
Q 021744          229 ---------------VGQVYAMAVGND---LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       229 ---------------~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~  259 (308)
                                     -.....|+++++   ++++=+.+.+|+.+++...
T Consensus       428 ~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          428 NQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             CSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             cccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence                           124678888874   5556666778888888764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.81  E-value=1.5  Score=36.46  Aligned_cols=117  Identities=15%  Similarity=0.066  Sum_probs=56.3

Q ss_pred             CcEEEEeCCCCeEEEEEeCC--C-e-eEEEEcCCCEEEEEc-------CCcEEEEEc--CCCceeeeeC---CCCC-EEE
Q 021744          172 ETVRVWDCASGQCAGVINLG--G-E-VGCMISEGPWIFIGV-------TNFVKAWNT--QTNTDLSLSG---PVGQ-VYA  234 (308)
Q Consensus       172 g~v~~wd~~~~~~~~~~~~~--~-~-v~~~~~~~~~l~~~~-------d~~i~~wd~--~~~~~~~~~~---~~~~-v~~  234 (308)
                      ..+.+||+.+.+-...-...  . . ..++..++++++.|.       ...+.+||+  .+.+-..+..   .... -.+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~  247 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGF  247 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCE
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccce
Confidence            57899999887544333222  1 1 233345666666654       235777887  4444332221   1111 122


Q ss_pred             EEEeCC-EEEEEcCC----------------------CeEEEEEcCCCCcccccceeccccCCCeEEEEecCCCeEEEee
Q 021744          235 MAVGND-LLFAGTQD----------------------GAILAWKFNVTTNCFEPAASLKVHTDSNRAHFSRDVTSLLGSV  291 (308)
Q Consensus       235 ~~~~~~-~l~~g~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~s~d~~~l~~s~  291 (308)
                      ++...+ +++.|+.+                      ..+.+||+.+.+  ++.+..+......-. +...++++++.++
T Consensus       248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~-~~~~~~~i~v~GG  324 (357)
T 2uvk_A          248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK--WDKSGELSQGRAYGV-SLPWNNSLLIIGG  324 (357)
T ss_dssp             EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEECSSCCBSSE-EEEETTEEEEEEE
T ss_pred             EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc--eeeCCCCCCCcccce-eEEeCCEEEEEee
Confidence            444555 66666632                      257889988764  355544432222222 3334566555333

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.80  E-value=2.2  Score=39.34  Aligned_cols=145  Identities=10%  Similarity=0.062  Sum_probs=76.4

Q ss_pred             CCCe-eeccCC------CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCC--eEEEEEcCCCceeeeEe
Q 021744           77 NTWG-RNNNFN------NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCK--FLHSWTVGDGFKLLTQL  146 (308)
Q Consensus        77 ~g~~-~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~--~i~iwd~~~~~~~~~~~  146 (308)
                      ++.. +.|+.+      +.+.+||..+.+............-..+....++.+ +.|+.++  .+.+||+.+..  ...+
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~  528 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--FKDV  528 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE--EEEC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--eEEc
Confidence            6666 777754      347788887654322111111111122222224544 7777654  68999998762  1122


Q ss_pred             e------CcccceEEEEEeCC-CCEEEEeeC--C-----CcEEEEeCCCCeE-----EEEEe-C----CCeeEEEEcC-C
Q 021744          147 E------GHQKVVSGITLPSG-SDKLYSGSK--D-----ETVRVWDCASGQC-----AGVIN-L----GGEVGCMISE-G  201 (308)
Q Consensus       147 ~------~h~~~v~~~~~~~~-~~~l~s~s~--d-----g~v~~wd~~~~~~-----~~~~~-~----~~~v~~~~~~-~  201 (308)
                      .      .......++.+..+ +..++.|+.  +     ..+.+||+.+.+-     ...+. .    .....++..+ +
T Consensus       529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~  608 (695)
T 2zwa_A          529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPR  608 (695)
T ss_dssp             CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETT
T ss_pred             cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCC
Confidence            1      11122233555655 566677765  2     4588999988761     12221 1    1112233334 7


Q ss_pred             CEEEEEc-C--------CcEEEEEcCCCcee
Q 021744          202 PWIFIGV-T--------NFVKAWNTQTNTDL  223 (308)
Q Consensus       202 ~~l~~~~-d--------~~i~~wd~~~~~~~  223 (308)
                      ++++.|+ +        ..+.+||+.+.+-.
T Consensus       609 ~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          609 KLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             EEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             EEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            7777654 2        36899999887654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.76  E-value=2.3  Score=38.57  Aligned_cols=175  Identities=7%  Similarity=-0.004  Sum_probs=96.9

Q ss_pred             CCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCC
Q 021744           85 FNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS  162 (308)
Q Consensus        85 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~  162 (308)
                      ..+.|+.-+++............-..+..+.+.+.+..  ++-...+.|..+++.........+...-.....+++++.+
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~   95 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   95 (619)
T ss_dssp             CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred             ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence            35567777775432111111111223566777775533  4445678888888875521122333333578899999866


Q ss_pred             CEE-EEeeCCCcEEEEeCCCCeEEEEEe--CCCeeE-EEEcCCCEEEEEc---CCcEEEEEcCCCceeee-eCCCCCEEE
Q 021744          163 DKL-YSGSKDETVRVWDCASGQCAGVIN--LGGEVG-CMISEGPWIFIGV---TNFVKAWNTQTNTDLSL-SGPVGQVYA  234 (308)
Q Consensus       163 ~~l-~s~s~dg~v~~wd~~~~~~~~~~~--~~~~v~-~~~~~~~~l~~~~---d~~i~~wd~~~~~~~~~-~~~~~~v~~  234 (308)
                      ..| ++-...+.|.+.++........+.  ...+.. ++.+.+..|+.+.   .+.|...++.......+ ...-.....
T Consensus        96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~G  175 (619)
T 3s94_A           96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG  175 (619)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcE
Confidence            555 555567899999987544333332  222222 2345555555433   45777777775544433 233456889


Q ss_pred             EEEeCC---EEEEEcCCCeEEEEEcCCC
Q 021744          235 MAVGND---LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       235 ~~~~~~---~l~~g~~dg~i~iwd~~~~  259 (308)
                      |+++++   ++++-...+.|..+|+...
T Consensus       176 lald~~~~~LY~aD~~~~~I~~~~~dG~  203 (619)
T 3s94_A          176 LTLDYEEQKLYWADAKLNFIHKSNLDGT  203 (619)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred             EEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence            999975   4555556778998888764

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.70  E-value=0.25  Score=38.29  Aligned_cols=146  Identities=11%  Similarity=-0.027  Sum_probs=79.5

Q ss_pred             cceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeE------EEEEeCCC--eeEEE--EcCCCEEEEEcCCcEEEEEcCCC
Q 021744          151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC------AGVINLGG--EVGCM--ISEGPWIFIGVTNFVKAWNTQTN  220 (308)
Q Consensus       151 ~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~------~~~~~~~~--~v~~~--~~~~~~l~~~~d~~i~~wd~~~~  220 (308)
                      ..+..++|+|++.+.+.  .+|.+.-.+..+.+.      -..+-...  ...++  -+++.+.++ .|+.|.-++-.+.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~  117 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQS  117 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCS
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcC
Confidence            46779999998875444  778777777655221      11121100  01233  256777777 7898888876443


Q ss_pred             cee------eeeC--CCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCCCcc-cccceeccc--cCCCeEE-EEecCCCeE
Q 021744          221 TDL------SLSG--PVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNC-FEPAASLKV--HTDSNRA-HFSRDVTSL  287 (308)
Q Consensus       221 ~~~------~~~~--~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~-~~~~~~~~~--~~~~v~~-~~s~d~~~l  287 (308)
                      ...      ...+  -=..+..|.+.|+ .|.+.. |+.++-......... +-...+..+  .-..-+. .|.+++.+.
T Consensus       118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~  196 (236)
T 1tl2_A          118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLF  196 (236)
T ss_dssp             TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEE
T ss_pred             CCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEE
Confidence            221      1111  1136799999999 555555 888554333321100 000111111  1223344 789999887


Q ss_pred             EEeeceEEEEeecC
Q 021744          288 LGSVSFIMFIGQNN  301 (308)
Q Consensus       288 ~~s~s~~i~~~~~~  301 (308)
                      +++ +..+|....+
T Consensus       197 ~v~-~g~~Y~~~~p  209 (236)
T 1tl2_A          197 GVQ-GGKFYEDYPP  209 (236)
T ss_dssp             EEE-TTEEEEESCC
T ss_pred             EEe-CCeEEecCCc
Confidence            777 7777765543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.24  E-value=2.4  Score=36.42  Aligned_cols=150  Identities=12%  Similarity=0.104  Sum_probs=90.1

Q ss_pred             ecCCCeeeccCCCcEEEEECCCCCCccccccee----eeeeeeeeeecCCceEEeeCCCeEEEEEcCCCce---------
Q 021744           75 ANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAV----IKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFK---------  141 (308)
Q Consensus        75 s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~---------  141 (308)
                      +.+|..+.-..++.||.-++.....- ......    -..+..+..+|+|.+++-..+..|.|-.+..+..         
T Consensus        29 ~~n~t~i~~a~~n~iR~~~i~~~~~Y-k~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           29 SQNGTRIVFIQDNIIRWYNVLTDSLY-HSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             ETTTTEEEEEETTEEEEEETTTCSSC-EEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred             EcCCCEEEEEECCEEEEEECCCCCcc-eEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence            44454455556788998888643211 111111    1135668889999886666677888888873310         


Q ss_pred             --eeeEeeC------cccceEEEEEeCC---CCEEEEeeCCCcEEEEeCCCC--eEEEEEeCCCeeEEEEcCCCEEEEEc
Q 021744          142 --LLTQLEG------HQKVVSGITLPSG---SDKLYSGSKDETVRVWDCASG--QCAGVINLGGEVGCMISEGPWIFIGV  208 (308)
Q Consensus       142 --~~~~~~~------h~~~v~~~~~~~~---~~~l~s~s~dg~v~~wd~~~~--~~~~~~~~~~~v~~~~~~~~~l~~~~  208 (308)
                        ..+.+.-      ...+|..+.|+|-   +..|++-..|++|++||+...  ++. .++...                
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~----------------  170 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPN----------------  170 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCC----------------
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccc----------------
Confidence              1122221      2467999999995   467999999999999999862  222 222110                


Q ss_pred             CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC----EEEEEcCCCeEEEE
Q 021744          209 TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAW  254 (308)
Q Consensus       209 d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iw  254 (308)
                                  ...........|.+++|.++    ++++.+..|.|+-.
T Consensus       171 ------------~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          171 ------------NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ------------SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ------------cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence                        01111223357788888877    55556677877654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.20  E-value=4.6  Score=39.63  Aligned_cols=152  Identities=13%  Similarity=0.130  Sum_probs=86.6

Q ss_pred             eEEEEEcCCCceeeeEeeC-cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEE--EEEeCCCeeEEEEc----C--
Q 021744          130 FLHSWTVGDGFKLLTQLEG-HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA--GVINLGGEVGCMIS----E--  200 (308)
Q Consensus       130 ~i~iwd~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~--~~~~~~~~v~~~~~----~--  200 (308)
                      .|++.+.... ..+..++. ....|...+.+.  .+++.++ ++.+.++.+..++..  .....+..+.|+.-    +  
T Consensus       493 ~Irli~~~~~-~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~  568 (1158)
T 3ei3_A          493 SVRLVSQEPK-ALVSEWKEPQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSN  568 (1158)
T ss_dssp             CEEEEESSSC-CEEEEECCTTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSST
T ss_pred             EEEEEECCCC-eEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCc
Confidence            4555555443 33444442 223566666553  3555554 577888877765432  23336678888842    1  


Q ss_pred             --CCEEEEEc--CCcEEEEEcCCCceeeeeC--CCCCEEEEEEe---CC-EEEEEcCCCeEEEEEcCCCCcccccceecc
Q 021744          201 --GPWIFIGV--TNFVKAWNTQTNTDLSLSG--PVGQVYAMAVG---ND-LLFAGTQDGAILAWKFNVTTNCFEPAASLK  270 (308)
Q Consensus       201 --~~~l~~~~--d~~i~~wd~~~~~~~~~~~--~~~~v~~~~~~---~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~  270 (308)
                        .+++++|.  |++++++++.+.+.+....  ......++.+.   .. +|..|-.||.+.-+.+..........++..
T Consensus       569 ~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~  648 (1158)
T 3ei3_A          569 GLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVT  648 (1158)
T ss_dssp             TCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEE
T ss_pred             ccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEE
Confidence              46888776  8899999999877663221  12345555554   23 889999999987776654221111111122


Q ss_pred             ccCCCeEE-EEecCCC
Q 021744          271 VHTDSNRA-HFSRDVT  285 (308)
Q Consensus       271 ~~~~~v~~-~~s~d~~  285 (308)
                      --..++.. .|...+.
T Consensus       649 LG~~pv~L~~~~~~~~  664 (1158)
T 3ei3_A          649 LGTQPTVLRTFRSLST  664 (1158)
T ss_dssp             CCSSCCEEEEEESSSC
T ss_pred             cCCCceEEEEEeeCCc
Confidence            22446666 6665544

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=94.11  E-value=3.3  Score=37.64  Aligned_cols=175  Identities=9%  Similarity=0.015  Sum_probs=106.3

Q ss_pred             cCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCC
Q 021744           84 NFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG  161 (308)
Q Consensus        84 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~  161 (308)
                      +....|+.-++++.+.........-..+..+.|.+.+..  ++...++.|+.+++... .....+.........+++++.
T Consensus        12 s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~-~~~~v~~~g~~~P~GlAvD~~   90 (628)
T 4a0p_A           12 SRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGS-ALEHVVEFGLDYPEGMAVDWL   90 (628)
T ss_dssp             EETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCEEEEETT
T ss_pred             EeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCC-CcEEEEeCCCCCcceEEEEeC
Confidence            356678888887543221111111223567788876533  55567889999988755 222233322345678999876


Q ss_pred             CCEE-EEeeCCCcEEEEeCCCCeEEEEEe--CCCeeE-EEEcCCCEEEEEc---CCcEEEEEcCCCceeeeeCCCCCEEE
Q 021744          162 SDKL-YSGSKDETVRVWDCASGQCAGVIN--LGGEVG-CMISEGPWIFIGV---TNFVKAWNTQTNTDLSLSGPVGQVYA  234 (308)
Q Consensus       162 ~~~l-~s~s~dg~v~~wd~~~~~~~~~~~--~~~~v~-~~~~~~~~l~~~~---d~~i~~wd~~~~~~~~~~~~~~~v~~  234 (308)
                      +..| ++-...+.|.+.++........+.  ...+.. ++.|....|+.+.   .+.|...++.......+...-.....
T Consensus        91 ~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~G  170 (628)
T 4a0p_A           91 GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANG  170 (628)
T ss_dssp             TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEE
T ss_pred             CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcce
Confidence            6555 555567789999987543322232  223322 2245455555433   56888888877665544444567899


Q ss_pred             EEEeCC---EEEEEcCCCeEEEEEcCCC
Q 021744          235 MAVGND---LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       235 ~~~~~~---~l~~g~~dg~i~iwd~~~~  259 (308)
                      |+++++   ++++-...+.|..+|+...
T Consensus       171 lalD~~~~~LY~aD~~~~~I~~~d~dG~  198 (628)
T 4a0p_A          171 LTIDYAKRRLYWTDLDTNLIESSNMLGL  198 (628)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEccccCEEEEEECCCCEEEEEcCCCC
Confidence            999985   5555566789999999764

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.10  E-value=1.4  Score=34.13  Aligned_cols=100  Identities=7%  Similarity=-0.262  Sum_probs=56.6

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeee--------eeeeeecCCceEEeeCCCeEEEEEcCCCce
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTD--------ILCRNWVQGNCMYGEKCKFLHSWTVGDGFK  141 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~  141 (308)
                      .++|+|+|.+ +.  .++.+.--+..+.+.  .........+        ..+.|.++|.+... .||.|+-++..+...
T Consensus        45 ~laf~P~G~LYaV--~~G~Ly~~~~~t~~~--~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~  119 (236)
T 1tl2_A           45 FLFLSPGGELYGV--LNDKIYKGTPPTHDN--DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDT  119 (236)
T ss_dssp             EEEECTTSCEEEE--ETTEEEEESCCCSTT--CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCSTT
T ss_pred             eEEECCCccEEEE--eCCeEEEECCCCCCc--ccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCCC
Confidence            7999999998 66  566544444322111  1111111222        56677788877444 669998888644211


Q ss_pred             eee----Ee--eCcccceEEEEEeCCCCEEEEeeCCCcEEEE
Q 021744          142 LLT----QL--EGHQKVVSGITLPSGSDKLYSGSKDETVRVW  177 (308)
Q Consensus       142 ~~~----~~--~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~w  177 (308)
                      .-.    +.  .+-=..+..+.+.|++.+.+..  |+.++-+
T Consensus       120 ~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~  159 (236)
T 1tl2_A          120 DNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKA  159 (236)
T ss_dssp             CCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEE
T ss_pred             CceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEec
Confidence            100    11  1112577999999999766555  7775433

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=93.94  E-value=2.3  Score=35.15  Aligned_cols=148  Identities=7%  Similarity=-0.051  Sum_probs=92.1

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccce-----e-eeeeeeeee---ecCCce-EEee------------
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRA-----V-IKTDILCRN---WVQGNC-MYGE------------  126 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~-----~-~~~~~~~~~---~~~~~~-~~g~------------  126 (308)
                      +++|.+....  ++.-..++|..||...+.........     . ...+..+.+   -+++++ +...            
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~   96 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS   96 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence            5789875555  66668999999998644322111111     1 112345556   366655 3222            


Q ss_pred             -CCCeEEEEEcC---CCceeeeEee--Ccc-----------cceEEEEEeCCCCEEEEeeCC-CcEEEEeCCCCeEEEEE
Q 021744          127 -KCKFLHSWTVG---DGFKLLTQLE--GHQ-----------KVVSGITLPSGSDKLYSGSKD-ETVRVWDCASGQCAGVI  188 (308)
Q Consensus       127 -~d~~i~iwd~~---~~~~~~~~~~--~h~-----------~~v~~~~~~~~~~~l~s~s~d-g~v~~wd~~~~~~~~~~  188 (308)
                       .+..|..||+.   ++ +.+....  ...           .....+++.++|+.-++++.- +.|...+.... .+..+
T Consensus        97 ~g~~~v~~~Dl~~~~tg-~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~  174 (334)
T 2p9w_A           97 HGASSFHSFNLPLSENS-KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTF  174 (334)
T ss_dssp             SSCCEEEEEESSCCTTC-CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEE
T ss_pred             CCCCEEEEEcCCcCCCC-CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeee
Confidence             26789999998   66 3443332  111           247899999999999988888 88888876643 33333


Q ss_pred             e-CCCe--------eEEEEcCCCEEEEEc-CCcEEEEEcCCC
Q 021744          189 N-LGGE--------VGCMISEGPWIFIGV-TNFVKAWNTQTN  220 (308)
Q Consensus       189 ~-~~~~--------v~~~~~~~~~l~~~~-d~~i~~wd~~~~  220 (308)
                      . ....        -..+.|+++.|++.. .+.+..+|+++.
T Consensus       175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            2 1111        123468898888654 889999998854

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=93.87  E-value=4.1  Score=37.83  Aligned_cols=214  Identities=9%  Similarity=0.060  Sum_probs=110.6

Q ss_pred             eeEEecCCCeeeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcc
Q 021744           71 AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ  150 (308)
Q Consensus        71 ~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~  150 (308)
                      +|.-..+|..-.|..+| +..||-..-+............+.++....++.+..|..+| +..||..+. +.........
T Consensus        26 ~I~qD~~G~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~-~f~~~~~~~~  102 (758)
T 3ott_A           26 CFLQDSEGLIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRAD-RYEQPETDFP  102 (758)
T ss_dssp             EEEECTTSCEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEETTE-EEEEETTTT-EECCCSCCCC
T ss_pred             EEEECCCCCEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCCC-EEECcccCCC
Confidence            45555666663344566 55565321110000001111235555555666666666554 788998876 3322111122


Q ss_pred             cceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe------CCCeeEEEEc--CCCEEEEEcCCcEEEEEcCCCce
Q 021744          151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN------LGGEVGCMIS--EGPWIFIGVTNFVKAWNTQTNTD  222 (308)
Q Consensus       151 ~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~------~~~~v~~~~~--~~~~l~~~~d~~i~~wd~~~~~~  222 (308)
                      ..|.++... ++ .|..++.+ -+..+|..+++.. .+.      ....+.++..  ++.+.+ +..+-+..+|..+++.
T Consensus       103 ~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~Gl~~~~~~~~~~  177 (758)
T 3ott_A          103 TDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYNGLCRYIPSNGKF  177 (758)
T ss_dssp             SCEEEEEEE-TT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEE-EETTEEEEEETTTTEE
T ss_pred             ceEEEEEec-CC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEE-EeCCCHhhCccCCCce
Confidence            356666543 44 45555665 5888998766543 331      2334666653  455544 4445688889877654


Q ss_pred             eeeeCC------CCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeece
Q 021744          223 LSLSGP------VGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSF  293 (308)
Q Consensus       223 ~~~~~~------~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~  293 (308)
                      ..+...      ...|.++...++  .|..|+. +-+..+|..++..  .....+  ....|.+ ...++|.+.+++.. 
T Consensus       178 ~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~--~~~~~l--~~~~i~~i~~d~~g~lWigT~~-  251 (758)
T 3ott_A          178 EGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI--KQTEAF--HNNSIKSLALDGNGDLLAGTDN-  251 (758)
T ss_dssp             EEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE--EEEEEE--EEEEEEEEEECTTCCEEEEETT-
T ss_pred             EEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE--EeccCC--CCCeEEEEEEcCCCCEEEEeCC-
Confidence            432211      234888888764  4555664 4577888776421  111111  1234555 55566766665532 


Q ss_pred             EEEEe
Q 021744          294 IMFIG  298 (308)
Q Consensus       294 ~i~~~  298 (308)
                      .++..
T Consensus       252 Gl~~~  256 (758)
T 3ott_A          252 GLYVY  256 (758)
T ss_dssp             EEEEE
T ss_pred             ceeEE
Confidence            34443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=93.58  E-value=2.8  Score=34.95  Aligned_cols=215  Identities=9%  Similarity=-0.081  Sum_probs=105.9

Q ss_pred             eeEEecCCCeeeccCCCcEEEEECCCCCCccc---ccc-eeeeeeeeeeeecC----Cce-EEeeCC-----CeEEEEEc
Q 021744           71 AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNI---NNR-AVIKTDILCRNWVQ----GNC-MYGEKC-----KFLHSWTV  136 (308)
Q Consensus        71 ~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~---~~~-~~~~~~~~~~~~~~----~~~-~~g~~d-----~~i~iwd~  136 (308)
                      .++|.|+|....+..++.|++++  .++....   ... ........+++.|+    +.+ ++-...     +.|..++.
T Consensus        35 ~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~  112 (352)
T 2ism_A           35 ALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRH  112 (352)
T ss_dssp             EEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEE
T ss_pred             EEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEe
Confidence            69999999883345568899888  3321100   000 00123566788887    433 333322     67777877


Q ss_pred             CCCc-----eeeeEee---CcccceEEEEEeCCCCEEEEeeC-------------CCcEEEEeCCCC-------------
Q 021744          137 GDGF-----KLLTQLE---GHQKVVSGITLPSGSDKLYSGSK-------------DETVRVWDCASG-------------  182 (308)
Q Consensus       137 ~~~~-----~~~~~~~---~h~~~v~~~~~~~~~~~l~s~s~-------------dg~v~~wd~~~~-------------  182 (308)
                      ....     ..+..+.   +.......++|.|++.+.++.+.             .+.|.-++....             
T Consensus       113 ~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~  192 (352)
T 2ism_A          113 LGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGA  192 (352)
T ss_dssp             CSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTS
T ss_pred             CCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCC
Confidence            6431     1222233   11112368999999976666432             245665655420             


Q ss_pred             -eEEEEEeCCCeeE-EEEc-CCCEEEEEc--CC-------cEEEEEcCCCc------------------ee-eeeCCCCC
Q 021744          183 -QCAGVINLGGEVG-CMIS-EGPWIFIGV--TN-------FVKAWNTQTNT------------------DL-SLSGPVGQ  231 (308)
Q Consensus       183 -~~~~~~~~~~~v~-~~~~-~~~~l~~~~--d~-------~i~~wd~~~~~------------------~~-~~~~~~~~  231 (308)
                       ..+...-+..+.. ++.+ +++++++-.  +.       .|.+.  ..+.                  +. .+ .+...
T Consensus       193 ~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~-~~~~a  269 (352)
T 2ism_A          193 RPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGRGNDPRYRDPLYFW-PQGFP  269 (352)
T ss_dssp             CTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEEC-TTCCC
T ss_pred             CccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCCCCCCCCcCCeEec-CCCCC
Confidence             1111111222222 2335 455555422  22       13332  2221                  11 12 22235


Q ss_pred             EEEEEEeCC-EEEEEcCCCeEEEEEcCCCCccc--ccceeccccCCCeEE-EEecCCCeEEEe
Q 021744          232 VYAMAVGND-LLFAGTQDGAILAWKFNVTTNCF--EPAASLKVHTDSNRA-HFSRDVTSLLGS  290 (308)
Q Consensus       232 v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~v~~-~~s~d~~~l~~s  290 (308)
                      ...++|... ++++.-..+.|...++.......  .....+......+.. ++.|||.+.++.
T Consensus       270 p~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~  332 (352)
T 2ism_A          270 PGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT  332 (352)
T ss_dssp             EEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred             CcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence            677888655 55555666788888876542100  001222122245556 999999766654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=92.65  E-value=4.6  Score=34.88  Aligned_cols=167  Identities=10%  Similarity=0.092  Sum_probs=104.6

Q ss_pred             CCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCE
Q 021744           85 FNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDK  164 (308)
Q Consensus        85 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (308)
                      .+.+|-|-|+.++.....  +  .-..-..-.+|....++--....+.|+|+++. +.++.+.- ...|.-..|-.+ +.
T Consensus        46 ~~~~vvIiDl~~~~~~~r--r--pi~AdsAIMnP~~~iiALrag~~lQiFnle~K-~klks~~~-~e~VvfWkWis~-~~  118 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIR--R--PISADSAIMNPASKVIALKAGKTLQIFNIEMK-SKMKAHTM-TDDVTFWKWISL-NT  118 (494)
T ss_dssp             TCCEEEEEETTSTTSCEE--E--ECCCSEEEECSSSSCEEEEETTEEEEEETTTT-EEEEEEEC-SSCCCEEEEEET-TE
T ss_pred             CCCeEEEEECCCCCccee--c--ccccceeeeCCCCcEEEEecCCeEEEEchHHh-hhhcceec-CCCceEEEecCC-Ce
Confidence            344788889876544311  1  11122233455554433233789999999998 66666653 457778888644 34


Q ss_pred             EEEeeCCCcEEEEeCCC-CeEEEEEeC-----CCeeEEE--EcCCCEEEE-Ec-------CCcEEEEEcCCCceeeeeCC
Q 021744          165 LYSGSKDETVRVWDCAS-GQCAGVINL-----GGEVGCM--ISEGPWIFI-GV-------TNFVKAWNTQTNTDLSLSGP  228 (308)
Q Consensus       165 l~s~s~dg~v~~wd~~~-~~~~~~~~~-----~~~v~~~--~~~~~~l~~-~~-------d~~i~~wd~~~~~~~~~~~~  228 (308)
                      |+-.+ +..|+-|++.. ..+++.+..     ...+...  .++.++++. |-       .|.+.+|..+.+..+.+.+|
T Consensus       119 l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGh  197 (494)
T 1bpo_A          119 VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGH  197 (494)
T ss_dssp             EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCS
T ss_pred             EEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheee
Confidence            54443 46799999974 467777762     2333333  467888773 31       45788999999888888888


Q ss_pred             CCCEEEEEEeCC-----EEEEEcCC---CeEEEEEcCCC
Q 021744          229 VGQVYAMAVGND-----LLFAGTQD---GAILAWKFNVT  259 (308)
Q Consensus       229 ~~~v~~~~~~~~-----~l~~g~~d---g~i~iwd~~~~  259 (308)
                      ......+.+..+     .++.+...   ++++|.++...
T Consensus       198 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~  236 (494)
T 1bpo_A          198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP  236 (494)
T ss_dssp             EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCC
T ss_pred             eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCC
Confidence            766655555432     44444432   78999998654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=92.06  E-value=4.2  Score=33.05  Aligned_cols=176  Identities=15%  Similarity=0.119  Sum_probs=84.8

Q ss_pred             eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeC----CC-------eEEEEEcCCCc-eeeeEee
Q 021744           81 RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEK----CK-------FLHSWTVGDGF-KLLTQLE  147 (308)
Q Consensus        81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~----d~-------~i~iwd~~~~~-~~~~~~~  147 (308)
                      +.|+.  .+..||..+.+....................++.. +.|+.    ++       .+.+||+.+.. +.+..+.
T Consensus        20 ~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p   97 (318)
T 2woz_A           20 LVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLP   97 (318)
T ss_dssp             EECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBS
T ss_pred             hcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCC
Confidence            45553  37888887665322111000011111122234444 66662    11       27788887762 1111121


Q ss_pred             CcccceEEEEEeCCCCEEEEeeCC-------CcEEEEeCCCCeEEEEEeCCCe---eEEEEcCCCEEEEEc-------CC
Q 021744          148 GHQKVVSGITLPSGSDKLYSGSKD-------ETVRVWDCASGQCAGVINLGGE---VGCMISEGPWIFIGV-------TN  210 (308)
Q Consensus       148 ~h~~~v~~~~~~~~~~~l~s~s~d-------g~v~~wd~~~~~~~~~~~~~~~---v~~~~~~~~~l~~~~-------d~  210 (308)
                      ..... .+++.. ++..++.|+.+       ..+.+||+.+.+-...-..+.+   ..++..++++++.|.       ..
T Consensus        98 ~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~  175 (318)
T 2woz_A           98 SARCL-FGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTN  175 (318)
T ss_dssp             SCBCS-CEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCC
T ss_pred             ccccc-cceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccc
Confidence            11111 222222 45666677654       3578889887754432222211   123345677666654       13


Q ss_pred             cEEEEEcCCCceeeeeCCC--CCEEEEEEeCC-EEEEEcCC-----CeEEEEEcCCCC
Q 021744          211 FVKAWNTQTNTDLSLSGPV--GQVYAMAVGND-LLFAGTQD-----GAILAWKFNVTT  260 (308)
Q Consensus       211 ~i~~wd~~~~~~~~~~~~~--~~v~~~~~~~~-~l~~g~~d-----g~i~iwd~~~~~  260 (308)
                      .+.+||+.+.+-..+....  ..-.+++...+ +++.|+.+     ..+.+||+.+.+
T Consensus       176 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          176 RVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             eEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            5899999988655332111  11123344455 55555543     347788888764

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=91.65  E-value=5.3  Score=33.40  Aligned_cols=160  Identities=12%  Similarity=0.073  Sum_probs=84.1

Q ss_pred             CCCeEEEEEcCCC--ceeeeEeeC-----cccceEEEEEeC--CCC-EEEEe-eC--CCcEEEEeCCCC--eE--EEEEe
Q 021744          127 KCKFLHSWTVGDG--FKLLTQLEG-----HQKVVSGITLPS--GSD-KLYSG-SK--DETVRVWDCASG--QC--AGVIN  189 (308)
Q Consensus       127 ~d~~i~iwd~~~~--~~~~~~~~~-----h~~~v~~~~~~~--~~~-~l~s~-s~--dg~v~~wd~~~~--~~--~~~~~  189 (308)
                      .+|.|.++|+++.  +...-.+.+     ..-....+.+.+  ++. +|+.+ ..  +.+|.+|++...  ..  +..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            6899999998743  111112222     223567777765  343 34333 33  467778776543  22  22232


Q ss_pred             CC--CeeEEE--EcCCCEEEEEc----C--------------CcEEEEEcCCCceeeeeCCCCCEEEEEEeCC---EEEE
Q 021744          190 LG--GEVGCM--ISEGPWIFIGV----T--------------NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFA  244 (308)
Q Consensus       190 ~~--~~v~~~--~~~~~~l~~~~----d--------------~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~---~l~~  244 (308)
                      ..  .....+  .++|.+.++..    |              +.|..+|.  ++...+...-...+.++|+||   ++++
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYva  238 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIA  238 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEE
Confidence            21  112222  46777766542    1              34444544  333333333346789999999   4555


Q ss_pred             EcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEec-CCCeEEEe
Q 021744          245 GTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR-DVTSLLGS  290 (308)
Q Consensus       245 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~-d~~~l~~s  290 (308)
                      -+..+.|..|++..... ......+. .....-. ++.+ +|.+.+++
T Consensus       239 dt~~~~I~~~~~~~~g~-l~~~~~~~-~~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          239 ELLAHKIHVYEKHANWT-LTPLRVLS-FDTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             EGGGTEEEEEEECTTSC-EEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred             eCCCCeEEEEEECCCCc-EecCEEEe-CCCCCceEEEeCCCCcEEEEe
Confidence            66788999999874211 12222332 1233333 6777 47766644

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=90.69  E-value=5.6  Score=31.96  Aligned_cols=202  Identities=12%  Similarity=0.044  Sum_probs=102.5

Q ss_pred             CCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeee
Q 021744           35 QKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDIL  113 (308)
Q Consensus        35 d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  113 (308)
                      |+.++.|-.....           .+..|...... -+.++.-..+ +.-. |+.|..|-.+..-++..+.... ..+..
T Consensus        41 ~G~v~~wG~n~~G-----------qlg~p~~~~~~-i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P~~~~-~~v~~  106 (282)
T 3qhy_B           41 GGKVLGWGANLNG-----------QLTMPAATQSG-VDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVPAEAR-SGVDA  106 (282)
T ss_dssp             TTEEEEEECCSSS-----------TTSCCGGGGSC-CCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCCGGGS-SSEEE
T ss_pred             CCEEEEEeCCCCC-----------CCCCCccCCCC-EEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCCCcccC-CCeEE
Confidence            8999999755431           11111111111 2344444445 3334 8999999876543333222211 12333


Q ss_pred             eeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEE-EEeCCC
Q 021744          114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG-VINLGG  192 (308)
Q Consensus       114 ~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~-~~~~~~  192 (308)
                      +..-..-. +.-. +|.|+.|-.....++ ..-......|..++.-...  .+.-. ||.|..|-......+. ......
T Consensus       107 ia~G~~hs-~al~-~G~v~~wG~n~~gql-g~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~p~~~~~  180 (282)
T 3qhy_B          107 IAAGAWAS-YALK-DGKVIAWGDDSDGQT-TVPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTVPAEAQS  180 (282)
T ss_dssp             EEEETTEE-EEEE-TTEEEEEECCTTSTT-SCCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSCCGGGGS
T ss_pred             EECcCCEE-EEEe-CCeEEEecCCCCCcC-CCCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCCceecCC
Confidence            33222222 3334 899999987643121 1111123456666654332  22233 7999999765422111 111223


Q ss_pred             eeEEEEc-CCCEEEEEcCCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCC
Q 021744          193 EVGCMIS-EGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       193 ~v~~~~~-~~~~l~~~~d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~  259 (308)
                      .+..+.. ....++. .++.|..|-....-.+ .-......|..++.... .++..  ||.|+.|=....
T Consensus       181 ~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~--~g~v~~wG~n~~  247 (282)
T 3qhy_B          181 GVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK--NGKVIAWGSSRT  247 (282)
T ss_dssp             SEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE--TTEEEEESTTCC
T ss_pred             CeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE--CCEEEEecCCCC
Confidence            4555543 3444556 7899999976543222 11111235777777666 55544  999999976553

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=88.86  E-value=7.9  Score=31.05  Aligned_cols=176  Identities=15%  Similarity=0.049  Sum_probs=93.1

Q ss_pred             EEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCccc
Q 021744           73 RFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK  151 (308)
Q Consensus        73 ~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~  151 (308)
                      .++.-..+ +.-. |+.|..|-.+..-++..+.... ..+..+..-..-.++. . ||.|+.|-....-+ +..-..-..
T Consensus        28 ~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~-~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gq-lg~P~~~~~  102 (282)
T 3qhy_B           28 AIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQ-SGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQ-TTVPAEARS  102 (282)
T ss_dssp             EEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGG-SCCCEEEECSSEEEEE-E-TTEEEEEECCTTST-TCCCGGGSS
T ss_pred             EEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCC-CCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCC-CCCCcccCC
Confidence            44444445 3335 9999999876543333222111 1233333222223333 3 89999998764311 111011124


Q ss_pred             ceEEEEEeCCCCEEEEeeCCCcEEEEeCCC-CeEEEEEeCCCeeEEEEcCCC-EEEEEcCCcEEEEEcCCCcee-eeeCC
Q 021744          152 VVSGITLPSGSDKLYSGSKDETVRVWDCAS-GQCAGVINLGGEVGCMISEGP-WIFIGVTNFVKAWNTQTNTDL-SLSGP  228 (308)
Q Consensus       152 ~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~-~~~~~~~~~~~~v~~~~~~~~-~l~~~~d~~i~~wd~~~~~~~-~~~~~  228 (308)
                      .|..++.-..  +.+.-. ||.|..|-... ++.-........+..+..... .++.. ++.|..|-......+ .-...
T Consensus       103 ~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~~~  178 (282)
T 3qhy_B          103 GVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPAEA  178 (282)
T ss_dssp             SEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGG
T ss_pred             CeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCceec
Confidence            6777776544  333334 89999997654 222111112234555544333 33344 889999976543222 11112


Q ss_pred             CCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCC
Q 021744          229 VGQVYAMAVGND-LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       229 ~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~  259 (308)
                      ...|..++.... .++.  .||.|+.|=....
T Consensus       179 ~~~v~~i~~G~~hs~al--~~G~v~~wG~n~~  208 (282)
T 3qhy_B          179 QSGVDDVAGGIFHSLAL--KDGKVIAWGDNRY  208 (282)
T ss_dssp             GSSEEEEEECSSEEEEE--ETTEEEEEECCTT
T ss_pred             CCCeEEEEecCCEEEEE--ECCeEEEEECCCC
Confidence            356888888777 5555  5999999976653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=88.16  E-value=16  Score=33.78  Aligned_cols=179  Identities=13%  Similarity=0.127  Sum_probs=100.8

Q ss_pred             eeEEecCCCeeeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEee---
Q 021744           71 AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLE---  147 (308)
Q Consensus        71 ~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~---  147 (308)
                      ++....+|.+-.|+.+| +..||..+.+... ........+..+. ..++.+..+..+ -+..+|..+. + +..+.   
T Consensus        67 ~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~-~~~~~~~~i~~i~-~~~g~lWigt~~-Gl~~~~~~~~-~-~~~~~~~~  140 (758)
T 3ott_A           67 CGVIIDNTYLYMGTDNG-ILVYNYRADRYEQ-PETDFPTDVRTMA-LQGDTLWLGALN-GLYTYQLQSR-K-LTSFDTRR  140 (758)
T ss_dssp             EEEEETTTEEEEEETTE-EEEEETTTTEECC-CSCCCCSCEEEEE-EETTEEEEEETT-EEEEEETTTC-C-EEEECHHH
T ss_pred             EEEEcCCCcEEEEeCCC-eEEEeCCCCEEEC-cccCCCceEEEEE-ecCCcEEEEcCC-cceeEeCCCC-e-EEEeccCC
Confidence            45556666663444455 7889986553221 1111111233333 245666556655 6788888765 2 22231   


Q ss_pred             --CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC-------CCeeEEEEc--CCCEEEEEcCCcEEEEE
Q 021744          148 --GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-------GGEVGCMIS--EGPWIFIGVTNFVKAWN  216 (308)
Q Consensus       148 --~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~-------~~~v~~~~~--~~~~l~~~~d~~i~~wd  216 (308)
                        .....|.++...+++.+.+ ++.+ -+..++..+++.. .+..       ...+.++..  ++..|.+|.++-+..+|
T Consensus       141 ~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~  217 (758)
T 3ott_A          141 NGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYF  217 (758)
T ss_dssp             HCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEE
T ss_pred             CCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEECCCCeEEc
Confidence              1134688888887777655 4444 4778888776543 2221       123566643  45555555555688899


Q ss_pred             cCCCceeeee-CCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCC
Q 021744          217 TQTNTDLSLS-GPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       217 ~~~~~~~~~~-~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~  259 (308)
                      ..+++...+. .....|.++...++ .|..|+.+ -+.+++..+.
T Consensus       218 ~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~  261 (758)
T 3ott_A          218 PSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTDN-GLYVYHNDTT  261 (758)
T ss_dssp             TTTTEEEEEEEEEEEEEEEEEECTTCCEEEEETT-EEEEECCTTS
T ss_pred             CCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeCC-ceeEEecCCC
Confidence            8877654221 12345888888776 55556654 5777876653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=87.27  E-value=12  Score=31.12  Aligned_cols=70  Identities=11%  Similarity=0.104  Sum_probs=45.4

Q ss_pred             eeeeeeecCCceEEeeCCCeEEEEEcCCCc-eeeeEee---CcccceEEEEEeCC---CCEEEEe-eCC-----CcEEEE
Q 021744          111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGF-KLLTQLE---GHQKVVSGITLPSG---SDKLYSG-SKD-----ETVRVW  177 (308)
Q Consensus       111 ~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~-~~~~~~~---~h~~~v~~~~~~~~---~~~l~s~-s~d-----g~v~~w  177 (308)
                      ...+.+.++|.+..+..++.|++++  ++. +.+..+.   ........++++|+   +..|+.+ ...     ..|..+
T Consensus        33 P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~  110 (352)
T 2ism_A           33 PWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL  110 (352)
T ss_dssp             EEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred             ceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence            5678889999887777779999998  331 2222221   22456789999998   5555443 332     568888


Q ss_pred             eCCCC
Q 021744          178 DCASG  182 (308)
Q Consensus       178 d~~~~  182 (308)
                      +...+
T Consensus       111 ~~~~~  115 (352)
T 2ism_A          111 RHLGE  115 (352)
T ss_dssp             EECSS
T ss_pred             EeCCC
Confidence            87643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=86.69  E-value=3.8  Score=40.91  Aligned_cols=117  Identities=11%  Similarity=0.058  Sum_probs=71.8

Q ss_pred             CCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC-EEEEEcCCC
Q 021744          171 DETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDG  249 (308)
Q Consensus       171 dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg  249 (308)
                      ..+|.|.|+.++..+...........+.|..+.++.=...++.+||+.+.+.+.-.....+|.-=.|-.+ .|+..+. .
T Consensus        47 ~~~vvIidl~~~~~~~rrpi~AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~-~  125 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTD-N  125 (1630)
T ss_pred             CceEEEEECCCCCCcccccccchhhccCCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcC-C
Confidence            3478888888766543333333333345667777765677999999998877632222345555555444 5554443 4


Q ss_pred             eEEEEEcCCCCcccccceeccccC----CCeEE-EEecCCCeEEEee
Q 021744          250 AILAWKFNVTTNCFEPAASLKVHT----DSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~~~----~~v~~-~~s~d~~~l~~s~  291 (308)
                      .|+-|++....   .|++.+..|.    ..|-. .-+++.+|++..+
T Consensus       126 aVyHW~~~~~s---~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~g  169 (1630)
T 1xi4_A          126 AVYHWSMEGES---QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTG  169 (1630)
T ss_pred             eEEEeccCCCC---ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEe
Confidence            89999997532   5666665553    34444 7788999987443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=81.04  E-value=34  Score=31.45  Aligned_cols=184  Identities=10%  Similarity=-0.007  Sum_probs=94.0

Q ss_pred             cCCCe-eeccCC----CcEEEEECCCCCCcccc-c-----ceeeeeeeeeeeec-CCce-EEeeCC------CeEEEEEc
Q 021744           76 NNTWG-RNNNFN----NHSNNYRAGNSKNSNIN-N-----RAVIKTDILCRNWV-QGNC-MYGEKC------KFLHSWTV  136 (308)
Q Consensus        76 ~~g~~-~s~~~d----~~i~vwd~~~~~~~~~~-~-----~~~~~~~~~~~~~~-~~~~-~~g~~d------~~i~iwd~  136 (308)
                      .++.. +.|+.+    ..+.+||..+.+..... .     ......-..+.... ++.+ +.|+.+      ..+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            55566 777753    45788888766432211 0     01111112223332 4444 777643      35788998


Q ss_pred             CCCc-eeeeEeeCcccceEEEEEeCCCCEEEEeeCCC--cEEEEeCCCCeEEEEEe---C---CCeeE-EEE-cC-CCEE
Q 021744          137 GDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE--TVRVWDCASGQCAGVIN---L---GGEVG-CMI-SE-GPWI  204 (308)
Q Consensus       137 ~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg--~v~~wd~~~~~~~~~~~---~---~~~v~-~~~-~~-~~~l  204 (308)
                      .+.. +.+..+...... .+++...++..++.|+.++  .+.+||..+.+-...-.   .   ..... ++. .+ ++++
T Consensus       476 ~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             TTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             CCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            8752 111112111111 2233323677888887655  68999998875332211   0   11112 222 23 5566


Q ss_pred             EEEc---C-----CcEEEEEcCCCc------eeeeeC----CCCCEEEEEEeCC-EEEEEcC--------CCeEEEEEcC
Q 021744          205 FIGV---T-----NFVKAWNTQTNT------DLSLSG----PVGQVYAMAVGND-LLFAGTQ--------DGAILAWKFN  257 (308)
Q Consensus       205 ~~~~---d-----~~i~~wd~~~~~------~~~~~~----~~~~v~~~~~~~~-~l~~g~~--------dg~i~iwd~~  257 (308)
                      +.|+   +     +.+.+||+.+.+      ...+..    .......+.+..+ +++.|+.        ...|.+||+.
T Consensus       555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  634 (695)
T 2zwa_A          555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL  634 (695)
T ss_dssp             EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred             EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence            6654   2     358899999887      222211    1122333444425 6666664        3468999998


Q ss_pred             CCC
Q 021744          258 VTT  260 (308)
Q Consensus       258 ~~~  260 (308)
                      +..
T Consensus       635 t~~  637 (695)
T 2zwa_A          635 SET  637 (695)
T ss_dssp             TTE
T ss_pred             CCe
Confidence            764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	308
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.004
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.004
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	4e-04
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	4e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.8 bits (112), Expect = 7e-07
 Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 10/150 (6%)

Query: 114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET 173
                    + G        W V +G        GH+  ++ I      +   +GS D T
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREG-MCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249

Query: 174 VRVWDCASGQCAGVINLGGEVGCMIS-----EGPWIFIGVTNF-VKAWNTQTNTDL-SLS 226
            R++D  + Q     +    +  + S      G  +  G  +F    W+         L+
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309

Query: 227 GPVGQVYAMAVGND--LLFAGTQDGAILAW 254
           G   +V  + V +D   +  G+ D  +  W
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.4 bits (98), Expect = 3e-05
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 131 LHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178
            + W           L GH   VS + +      + +GS D  +++W+
Sbjct: 294 CNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.7 bits (104), Expect = 6e-06
 Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 3/129 (2%)

Query: 63  AATANGAAAKRFANNTWGRNNNFNNHSNNYR--AGNSKNSNINNRAVIKTDILCRNWVQG 120
           A+ +N    + +   T         H +     +   ++S  +      ++         
Sbjct: 159 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP 218

Query: 121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180
             + G + K +  W V  G   L  L GH   V G+   SG   + S + D+T+RVWD  
Sbjct: 219 FLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277

Query: 181 SGQCAGVIN 189
           + +C   +N
Sbjct: 278 NKRCMKTLN 286

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.7 bits (96), Expect = 6e-05
 Identities = 14/77 (18%), Positives = 27/77 (35%)

Query: 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIF 205
           L GH+  V+ +        + S S+D T++VWD  +G     +    +    IS      
Sbjct: 13  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72

Query: 206 IGVTNFVKAWNTQTNTD 222
           +  +          +  
Sbjct: 73  LLASCSADMTIKLWDFQ 89

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.6 bits (88), Expect = 6e-04
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178
               K L  W   +  + +  L  H+  V+ +     +  + +GS D+TV+VW+
Sbjct: 265 CADDKTLRVWDYKNK-RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 32/198 (16%), Positives = 54/198 (27%), Gaps = 32/198 (16%)

Query: 114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET 173
                 G+ +                   +    GH++ V  +        + S S D+T
Sbjct: 107 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 166

Query: 174 VRVWDCASGQCAGVI-----------------------NLGGEVGCMISEGPWIFIGVT- 209
           VRVW  A+ +C   +                         G E       GP++  G   
Sbjct: 167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 226

Query: 210 NFVKAWNTQTNTDL-SLSGPVGQVYAMAV--GNDLLFAGTQDGAILAWKFNVTTNCFEPA 266
             +K W+  T   L +L G    V  +    G   + +   D  +  W            
Sbjct: 227 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD----YKNKRCM 282

Query: 267 ASLKVHTDS-NRAHFSRD 283
            +L  H        F + 
Sbjct: 283 KTLNAHEHFVTSLDFHKT 300

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 16/159 (10%), Positives = 34/159 (21%), Gaps = 21/159 (13%)

Query: 131 LHSWTV-GDGFKLLTQLEGHQK---VVSG-----ITLPSGSDKLYSGSKDETVRVWDCAS 181
             +W         L    G      V            +   +   G + + V V+D  +
Sbjct: 46  TENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT 105

Query: 182 GQCAGVINLGGEVGCMISEGPWIF--------IGVTNF----VKAWNTQTNTDLSLSGPV 229
                 I L       +     I         +    F        +    +D  L+   
Sbjct: 106 FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSA 165

Query: 230 GQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAAS 268
              +         + G+   ++ A              +
Sbjct: 166 SCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA 204

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 138 DGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGVINLGG 192
              +    +       + I    G+   Y + +  E + ++D AS Q    + L  
Sbjct: 302 SVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.8 bits (101), Expect = 1e-05
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG 191
            +     GH K ++ ++  +    L+S   +  +  WD ++G    V    
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV 53

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189
           W  G+  K    L+GH   V       G +++ SGS D T++VW   +G+C   + 
Sbjct: 1   WRRGE-LKSPKVLKGHDDHVITCLQFCG-NRIVSGSDDNTLKVWSAVTGKCLRTLV 54

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.8 bits (96), Expect = 5e-05
 Identities = 23/175 (13%), Positives = 42/175 (24%), Gaps = 11/175 (6%)

Query: 38  CNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNS 97
                    +            +    +  G A        +  N +  + S      NS
Sbjct: 132 VTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS 191

Query: 98  KNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGIT 157
               +   A      +     +      +K     S       K+  ++           
Sbjct: 192 VIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAV 251

Query: 158 LPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPW---IFIGVT 209
            P G     + S   TV V D A+      + +G        + P+    FIG  
Sbjct: 252 TPDGKKVYVALSFCNTVSVIDTATNTITATMAVG--------KNPYASGQFIGSI 298

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 6e-05
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 139 GFKLLTQLEGHQKVVSGIT-LPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189
           G   L ++    +   G+  L     K+ SG +D T+++WD  + +C  ++ 
Sbjct: 1   GRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT 52

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 15/153 (9%)

Query: 114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET 173
             ++     +     + +  W      + +  L GH++ +    L      + SGS D T
Sbjct: 143 VVDFDDKYIVSASGDRTIKVWNTSTC-EFVRTLNGHKRGI--ACLQYRDRLVVSGSSDNT 199

Query: 174 VRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVT--NFVKAWNTQTNTDL-------- 223
           +R+WD   G C  V+    E+   I       +       +K W+     D         
Sbjct: 200 IRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 259

Query: 224 --SLSGPVGQVYAMAVGNDLLFAGTQDGAILAW 254
             +L    G+V+ +      + + + D  IL W
Sbjct: 260 LRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178
               G     +  ++V    K++  L  H+  V+ +        L S   D  ++ W+
Sbjct: 229 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW-ETPSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA 185
           ++L  + GH K ++ +T+    + L SGS D  +  W  +S    
Sbjct: 4   EVLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMHQD 44

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 1e-04
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)

Query: 113 LCRNWVQ-GNCMYGEKCKFLHS 133
           LCR +   G C YG +C F+H+
Sbjct: 10  LCRTFHTIGFCPYGPRCHFIHN 31

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 6/48 (12%), Positives = 17/48 (35%)

Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           +++   +  +  +S I +      L   S D ++ V+          +
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL 49

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 131 LHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190
           L  + +     +      H      +      DKLY G     + V++  + +    I L
Sbjct: 274 LAKYDLKQRKLIKAANLDHT--YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331

Query: 191 GG 192
            G
Sbjct: 332 PG 333

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 8/66 (12%), Positives = 22/66 (33%), Gaps = 2/66 (3%)

Query: 128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187
              L S+ +     +      H      + + +    ++ G     +  +D  + +  G 
Sbjct: 259 YNVLESFDLEKNASIKRVPLPHS--YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316

Query: 188 INLGGE 193
           ++L G 
Sbjct: 317 VDLPGN 322

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.1 bits (81), Expect = 4e-04
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)

Query: 113 LCRNWVQ-GNCMYGEKCKFLHS 133
           LCR + + G C YG KC+F H 
Sbjct: 11  LCRTYSESGRCRYGAKCQFAHG 32

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 4e-04
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 113 LCRNWVQ-GNCMYGEKCKFLHS 133
           LCR + + G C YGEKC+F H 
Sbjct: 8   LCRPFEESGTCKYGEKCQFAHG 29

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 5e-04
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 144 TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN--LGGEVGCMISEG 201
           T L GH   V         + + +G+ D+ +RV+D  + +    ++   GG      + G
Sbjct: 6   TTLRGHMTSVITCLQFED-NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64

Query: 202 PWIFIGVTNFVKAWNTQTN 220
             +  G T+          
Sbjct: 65  GILVSGSTDRTVRVWDIKK 83

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 7e-04
 Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 25/136 (18%)

Query: 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS------ 199
             GH+  V  +        + SGS D +V++W+  +              C ++      
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309

Query: 200 ---------EGPWIFIGVT-NFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-------- 240
                       +I  G     V  W+ ++   L  L G    V ++AV N         
Sbjct: 310 FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN 369

Query: 241 LLFAGTQDGAILAWKF 256
           +   G+ D     WK+
Sbjct: 370 VFATGSGDCKARIWKY 385

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 9/48 (18%), Positives = 20/48 (41%)

Query: 137 GDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC 184
           G+ +  + +L+ H   V+G+     S+++ +   D    VW       
Sbjct: 38  GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 162 SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPW-----IFIGVTNFVKAWN 216
             K+ S S D+T+++W+ A+ +    I +G  +        W     + I    F+   N
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	308
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.98
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.85
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.84
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.81
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.78
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.77
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.74
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.74
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.73
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.67
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.64
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.64
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.56
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.47
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.44
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.43
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.4
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.28
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.0
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.89
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.82
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.79
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.77
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.75
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.75
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.73
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.73
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.61
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.5
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.49
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.45
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.29
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.19
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.15
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.05
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.04
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.0
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.81
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.24
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.08
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.0
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.91
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.77
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.56
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.15
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.09
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.0
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.99
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.84
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.79
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.78
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.68
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.32
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.06
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.75
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.59
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.0
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.73
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	93.61
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	91.8
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.78
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	88.25
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	86.95
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	82.28
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	80.78
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	80.58

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-36  Score=253.30  Aligned_cols=261  Identities=12%  Similarity=0.140  Sum_probs=213.8

Q ss_pred             CCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCc
Q 021744           24 GGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        24 ~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~  100 (308)
                      ..+.+||||+ |++|++||....... .+.      ......+|...  +++|+|++++ ++|+.|++|++||+......
T Consensus        61 ~~g~~latg~-dg~V~iWd~~~~~~~-~~~------~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~  132 (337)
T d1gxra_          61 NPTRHVYTGG-KGCVKVWDISHPGNK-SPV------SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR  132 (337)
T ss_dssp             SSSSEEEEEC-BSEEEEEETTSTTCC-SCS------EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E
T ss_pred             CCCCEEEEEE-CCEEEEEEccCCccc-cee------EEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccc
Confidence            3467899987 899999998765110 000      01122466666  8999999999 99999999999999654332


Q ss_pred             -ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 021744          101 -NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (308)
Q Consensus       101 -~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd  178 (308)
                       ......|...+..+.+++++.. ++++.|+.|++|++.++ +......+|...|.+++|++++..+++++.|+.+++||
T Consensus       133 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~-~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d  211 (337)
T d1gxra_         133 IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD  211 (337)
T ss_dssp             EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence             1223445556888889999866 88999999999999998 78888899999999999999999999999999999999


Q ss_pred             CCCCeEEEEEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEE
Q 021744          179 CASGQCAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILA  253 (308)
Q Consensus       179 ~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~i  253 (308)
                      +++++.+..+.+...+.++  .++++++++++ |+.+++||+++.+......|...|++++|+|+  +|++++.||.|++
T Consensus       212 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~i  291 (337)
T d1gxra_         212 LREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA  291 (337)
T ss_dssp             TTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cccceeecccccccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEE
Confidence            9999999999988888876  47788888766 99999999999998888899999999999999  9999999999999


Q ss_pred             EEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEe
Q 021744          254 WKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIG  298 (308)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~  298 (308)
                      ||+.++    +++..+ .|...|.+ +|+|++++|++++ +..|.+|
T Consensus       292 wd~~~~----~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vW  333 (337)
T d1gxra_         292 WRTPYG----ASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVY  333 (337)
T ss_dssp             EETTTC----CEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             EECCCC----CEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            999987    555554 47788888 9999999998665 4545444

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.5e-34  Score=237.24  Aligned_cols=255  Identities=15%  Similarity=0.232  Sum_probs=216.0

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      +.+||||+.|++|++||..++            .....+.+|...  +++++|++.+ +++..++++.+|+....+.. .
T Consensus        29 ~~~l~s~s~Dg~i~iWd~~~~------------~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   95 (317)
T d1vyhc1          29 FSVMVSASEDATIKVWDYETG------------DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI-R   95 (317)
T ss_dssp             SSEEEEEESSSCEEEEETTTC------------CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE-E
T ss_pred             CCEEEEEeCCCeEEEEECCCC------------CEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccc-c
Confidence            578999999999999999877            122334577777  8999999999 99999999999998655433 2


Q ss_pred             ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744          103 NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~  181 (308)
                      ....+...+..+.+.+++.. ++++.|+.+++||++++ +.+..+.+|...+.+++|+|++.+|++++.|+.|++|++.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~  174 (317)
T d1vyhc1          96 TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT  174 (317)
T ss_dssp             CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccccccccceeeeccCCCceEEeeccCcceeEeecccc-eeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeecc
Confidence            34455666888889998876 88999999999999998 78889999999999999999999999999999999999999


Q ss_pred             CeEEEEEe-CCCeeEEEE----------------------cCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEE
Q 021744          182 GQCAGVIN-LGGEVGCMI----------------------SEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMA  236 (308)
Q Consensus       182 ~~~~~~~~-~~~~v~~~~----------------------~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~  236 (308)
                      ++.+..+. +...+.++.                      .++.++++++ |+.|++||+++++++ .+.+|...|.+++
T Consensus       175 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~  254 (317)
T d1vyhc1         175 KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL  254 (317)
T ss_dssp             CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             ceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEE
Confidence            99888876 444444431                      2355677666 999999999999887 7889999999999


Q ss_pred             EeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEe
Q 021744          237 VGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIG  298 (308)
Q Consensus       237 ~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~  298 (308)
                      ++|+  +|++|+.||.|++||+.++    +++.++.+|...|++ +|+|++++|++++ +..|.+|
T Consensus       255 ~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iW  316 (317)
T d1vyhc1         255 FHSGGKFILSCADDKTLRVWDYKNK----RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW  316 (317)
T ss_dssp             ECSSSSCEEEEETTTEEEEECCTTS----CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             ECCCCCEEEEEECCCeEEEEECCCC----cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEe
Confidence            9999  8999999999999999987    788999999999999 9999999998655 6777766

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.2e-34  Score=240.52  Aligned_cols=256  Identities=11%  Similarity=0.080  Sum_probs=202.3

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc-
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN-  101 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~-  101 (308)
                      +..||.+ .++.+.+|+..+.            .....+.+|...  +++|+|+|++ |+|+.|++|+|||+.+++... 
T Consensus        29 g~~l~~~-~~~~v~i~~~~~~------------~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~   95 (311)
T d1nr0a1          29 GDKIQYC-NGTSVYTVPVGSL------------TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK   95 (311)
T ss_dssp             SSEEEEE-ETTEEEEEETTCS------------SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred             CCEEEEE-eCCEEEEEECCCC------------ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccc
Confidence            4556665 4667999998765            222335678777  8999999999 999999999999998765432 


Q ss_pred             cccceeeeeeeeeeeecCCce-EEeeC--CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCE-EEEeeCCCcEEEE
Q 021744          102 INNRAVIKTDILCRNWVQGNC-MYGEK--CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDK-LYSGSKDETVRVW  177 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~-~~g~~--d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s~dg~v~~w  177 (308)
                      .....|...+.++.|++++.. ++++.  +..+++|+++++ +....+.+|...|.+++|+|++++ +++|+.|+.|++|
T Consensus        96 ~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~-~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~  174 (311)
T d1nr0a1          96 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG-TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF  174 (311)
T ss_dssp             EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC-CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEE
T ss_pred             cccccccCccccccccccccccccccccccccccccccccc-cccccccccccccccccccccceeeecccccccccccc
Confidence            234556777999999999976 55553  567999999988 788889999999999999999875 7899999999999


Q ss_pred             eCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-e-------eeCCCCCEEEEEEeCC--EEE
Q 021744          178 DCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-S-------LSGPVGQVYAMAVGND--LLF  243 (308)
Q Consensus       178 d~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~-------~~~~~~~v~~~~~~~~--~l~  243 (308)
                      |+++++....+. +..++.++  .|+++++++++ |+.|++||+++++.. .       ..+|...|++++|+|+  +|+
T Consensus       175 d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~  254 (311)
T d1nr0a1         175 EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA  254 (311)
T ss_dssp             ETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred             cccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEE
Confidence            999999988887 67778776  47889998776 999999999987654 2       3468889999999998  999


Q ss_pred             EEcCCCeEEEEEcCCCCcccccceeccccCCC-eEE-EEecCCCeEEEe-eceEEEEee
Q 021744          244 AGTQDGAILAWKFNVTTNCFEPAASLKVHTDS-NRA-HFSRDVTSLLGS-VSFIMFIGQ  299 (308)
Q Consensus       244 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-v~~-~~s~d~~~l~~s-~s~~i~~~~  299 (308)
                      +|+.||.|+|||++++    +++.++..|... ... .+.+++.+|+++ .+..|.++.
T Consensus       255 tgs~Dg~v~iwd~~t~----~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd  309 (311)
T d1nr0a1         255 SASADKTIKIWNVATL----KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN  309 (311)
T ss_dssp             EEETTSEEEEEETTTT----EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred             EEeCCCeEEEEECCCC----cEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEe
Confidence            9999999999999987    777777765442 222 455555666644 466665553

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-32  Score=234.63  Aligned_cols=268  Identities=16%  Similarity=0.194  Sum_probs=200.4

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCccc------ccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECC
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLH------RELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAG   95 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~------~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~   95 (308)
                      .|.+||+|+ |++|++||..++........+      ..........+|...  +++|+|++++ ++|+.|++|++||..
T Consensus        73 dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~  151 (388)
T d1erja_          73 DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE  151 (388)
T ss_dssp             TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccc
Confidence            467899986 899999998876221000000      000011122345555  8999999999 999999999999998


Q ss_pred             CCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcE
Q 021744           96 NSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETV  174 (308)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v  174 (308)
                      .++... ....|...+..+.+++++.. ++++.++.+++||..+. ........+...+....+.+++.+|++++.|+.|
T Consensus       152 ~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  229 (388)
T d1erja_         152 NRKIVM-ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG-QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV  229 (388)
T ss_dssp             TTEEEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred             cccccc-ccccccccccccccccccccccccccceeeeeeecccc-ccccccccccccccccccCCCCCeEEEEcCCCeE
Confidence            775542 33556777889999998866 88999999999999988 6666666555544444445588999999999999


Q ss_pred             EEEeCCCCeEEEEEe--------CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCce-------------eeeeCCCC
Q 021744          175 RVWDCASGQCAGVIN--------LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTD-------------LSLSGPVG  230 (308)
Q Consensus       175 ~~wd~~~~~~~~~~~--------~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~-------------~~~~~~~~  230 (308)
                      ++||.++++.+..+.        +...+.++  .+++++|++++ |+.|++||+++.+.             .....|..
T Consensus       230 ~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (388)
T d1erja_         230 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD  309 (388)
T ss_dssp             EEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSS
T ss_pred             EEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccc
Confidence            999999998887765        34566665  47889999876 99999999986532             14557889


Q ss_pred             CEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-E------EecCCCeEEEee-ceEEEEee
Q 021744          231 QVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-H------FSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       231 ~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~------~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      .|.+++|+|+  +|++|+.||.|++||++++    +++.++.+|...|.+ +      |+|++.+|++++ +..|.+|.
T Consensus       310 ~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~----~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~  384 (388)
T d1erja_         310 FVLSVATTQNDEYILSGSKDRGVLFWDKKSG----NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK  384 (388)
T ss_dssp             CEEEEEECGGGCEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEeCCCEEEEEECCCC----cEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEe
Confidence            9999999998  9999999999999999987    788899999999887 5      467888888655 66666665

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-31  Score=220.68  Aligned_cols=256  Identities=13%  Similarity=0.137  Sum_probs=192.1

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCeeeccCCCcEEEEECCCCCCcccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      +.+||||+.|++|++||..++           ........+|...  +++|+|++.+++++.|+++++|+..........
T Consensus        24 g~~l~s~s~Dg~v~vWd~~~~-----------~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~   92 (299)
T d1nr0a2          24 GKTLFSADAEGHINSWDISTG-----------ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSK   92 (299)
T ss_dssp             SSEEEEEETTSCEEEEETTTC-----------CEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTS
T ss_pred             CCEEEEEcCCCeEEEEECCCC-----------cEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCCccccccc
Confidence            578999999999999999876           2222223456666  899999998888888999999998654332212


Q ss_pred             --cceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCC
Q 021744          104 --NRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (308)
Q Consensus       104 --~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~  181 (308)
                        ...+...+..+.+++++..++++.++.+++|+....   ....  ....+.+++|+|+++++++++.|+.|++||+++
T Consensus        93 ~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~---~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~  167 (299)
T d1nr0a2          93 AVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL---TEVP--ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG  167 (299)
T ss_dssp             CCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE---EEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccccc---cccc--ccccccccccccccccccccccccccccccccc
Confidence              223344577889999998877788899999985432   3222  334678899999999999999999999999998


Q ss_pred             CeEEE--EEeCCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee----eeeCCCCCEEEEEEeCC--EEEEEcCCCe
Q 021744          182 GQCAG--VINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL----SLSGPVGQVYAMAVGND--LLFAGTQDGA  250 (308)
Q Consensus       182 ~~~~~--~~~~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~----~~~~~~~~v~~~~~~~~--~l~~g~~dg~  250 (308)
                      ++...  ...+...+.++  .+++++|++++ ++.|++||+.++...    .+.+|...|++++|+|+  +|++|+.||.
T Consensus       168 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~  247 (299)
T d1nr0a2         168 ASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS  247 (299)
T ss_dssp             TEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCE
Confidence            76544  34477888776  47788998776 999999999887654    45678999999999999  9999999999


Q ss_pred             EEEEEcCCCCcccccceeccc-cCCCeEEEEecCCCeEEEee-ceEEEEee
Q 021744          251 ILAWKFNVTTNCFEPAASLKV-HTDSNRAHFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      |++||++++..  ..+..... +...+.+.+++++++|++++ +..|.+|.
T Consensus       248 i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWd  296 (299)
T d1nr0a2         248 VIVWNMNKPSD--HPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN  296 (299)
T ss_dssp             EEEEETTCTTS--CCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             EEEEECCCCCc--ceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEe
Confidence            99999998643  33333334 34566665556677777555 55555543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.4e-31  Score=221.31  Aligned_cols=257  Identities=14%  Similarity=0.199  Sum_probs=207.8

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .+.+||||+.|++|++||..++           . ....+.+|...  +++|+|++.+ ++|+.|+++++|+........
T Consensus        66 ~~~~l~sgs~Dg~v~iWd~~~~-----------~-~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~  133 (340)
T d1tbga_          66 DSRLLVSASQDGKLIIWDSYTT-----------N-KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV  133 (340)
T ss_dssp             TSSEEEEEETTTEEEEEETTTT-----------E-EEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCC
T ss_pred             CCCEEEEEECCCceeeeecccc-----------e-eEEEEecccccEEeeEeeccceeeeeecccceeeccccccccccc
Confidence            4678999999999999998876           1 11223456655  8999999999 999999999999986554332


Q ss_pred             ccc---ceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 021744          102 INN---RAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (308)
Q Consensus       102 ~~~---~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd  178 (308)
                      ...   ..+....................+.....+..... ........+...+....+.+...++++++.|+.|++||
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d  212 (340)
T d1tbga_         134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD  212 (340)
T ss_dssp             CEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTT-EEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             ccceecccccccccccccccccccccccccccccccccccc-cccccccccceeEeeeccccccceeEEeecCceEEEEE
Confidence            221   22233334444444445577888999999998877 56666777888999999999999999999999999999


Q ss_pred             CCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-e--eeCCCCCEEEEEEeCC--EEEEEcCCC
Q 021744          179 CASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-S--LSGPVGQVYAMAVGND--LLFAGTQDG  249 (308)
Q Consensus       179 ~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~--~~~~~~~v~~~~~~~~--~l~~g~~dg  249 (308)
                      +++++++..+. +...+.++  .+++++|++++ |+.|++||++..+.. .  ...+...+.+++|+|+  +|++|+.||
T Consensus       213 ~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg  292 (340)
T d1tbga_         213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF  292 (340)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTS
T ss_pred             CCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCC
Confidence            99999999988 67788776  47889999876 999999999988776 2  3456678999999999  999999999


Q ss_pred             eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEe
Q 021744          250 AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIG  298 (308)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~  298 (308)
                      .|++||+.++    +++..+.+|...|++ +|+|++.+|++++ +..|.+|
T Consensus       293 ~i~iwd~~~~----~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         293 NCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             CEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             EEEEEECCCC----cEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEe
Confidence            9999999987    788999999999999 9999999998655 6666665

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-31  Score=222.62  Aligned_cols=221  Identities=12%  Similarity=0.103  Sum_probs=182.4

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccC--CCcEEEEECCCCCC
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNF--NNHSNNYRAGNSKN   99 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~--d~~i~vwd~~~~~~   99 (308)
                      .+.+||+|+.|++|++||......          .....+.+|...  +++|+|+++. ++++.  +..++||++++++.
T Consensus        69 ~g~~latg~~dg~i~iwd~~~~~~----------~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~  138 (311)
T d1nr0a1          69 SGYYCASGDVHGNVRIWDTTQTTH----------ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS  138 (311)
T ss_dssp             TSSEEEEEETTSEEEEEESSSTTC----------CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB
T ss_pred             CCCeEeccccCceEeeeeeecccc----------ccccccccccCccccccccccccccccccccccccccccccccccc
Confidence            478999999999999999887611          111224566666  8999999998 77765  56699999988765


Q ss_pred             cccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEE
Q 021744          100 SNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW  177 (308)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~w  177 (308)
                      .. ....|...+..+.|+|++..  ++|+.|+.|++||+++. +....+.+|...|.+++|+|+++++++++.|+.|++|
T Consensus       139 ~~-~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~-~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~  216 (311)
T d1nr0a1         139 NG-NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY  216 (311)
T ss_dssp             CB-CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cc-cccccccccccccccccceeeeccccccccccccccccc-ccccccccccccccccccCcccccccccccccccccc
Confidence            53 44667777999999998853  78999999999999998 7888999999999999999999999999999999999


Q ss_pred             eCCCCeEEEEEe--------CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCC---CCEEEEEEeCCEE
Q 021744          178 DCASGQCAGVIN--------LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPV---GQVYAMAVGNDLL  242 (308)
Q Consensus       178 d~~~~~~~~~~~--------~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~---~~v~~~~~~~~~l  242 (308)
                      |+++++.+..+.        |...+.++  .+++++|++|+ |+.|++||+++++++ ++..|.   ..+.++.++++.|
T Consensus       217 d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l  296 (311)
T d1nr0a1         217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL  296 (311)
T ss_dssp             ETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCE
T ss_pred             ccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEE
Confidence            999998888775        34567766  47899999877 999999999999887 565553   3567788887788


Q ss_pred             EEEcCCCeEEEEEcC
Q 021744          243 FAGTQDGAILAWKFN  257 (308)
Q Consensus       243 ~~g~~dg~i~iwd~~  257 (308)
                      ++++.||.|++||.+
T Consensus       297 ~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         297 VSISANGFINFVNPE  311 (311)
T ss_dssp             EEEETTCCEEEEETT
T ss_pred             EEEECCCEEEEEeCC
Confidence            899999999999974

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-30  Score=219.83  Aligned_cols=229  Identities=14%  Similarity=0.232  Sum_probs=191.0

Q ss_pred             ccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc----ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcC
Q 021744           66 ANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI----NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVG  137 (308)
Q Consensus        66 gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~  137 (308)
                      +|...  +++|+|+|++ |+|+ |+.|+|||+.++.....    ....|...+.+++|+|++.. ++++.|+.|++||+.
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence            67766  8999999999 8887 89999999976543221    12345666999999999976 889999999999987


Q ss_pred             CCc-eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcE
Q 021744          138 DGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFV  212 (308)
Q Consensus       138 ~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i  212 (308)
                      ... +....+..|...+..++|+|++.++++++.|+.|++|+++++++..... +...+.++  .+++..+++++ |+.+
T Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v  207 (337)
T d1gxra_         128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV  207 (337)
T ss_dssp             CC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            542 4567788999999999999999999999999999999999999887777 67777776  36788888776 9999


Q ss_pred             EEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE
Q 021744          213 KAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG  289 (308)
Q Consensus       213 ~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~  289 (308)
                      ++||+++++.+....|...|.+++|+|+  +|++++.|+.|++||++.+    + ......|...|.. +|+|++++|++
T Consensus       208 ~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~----~-~~~~~~~~~~i~~v~~s~~g~~l~s  282 (337)
T d1gxra_         208 RSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP----D-KYQLHLHESCVLSLKFAYCGKWFVS  282 (337)
T ss_dssp             EEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS----C-EEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccceeecccccccceEEEEEcccccccceecccccccccccccc----c-cccccccccccceEEECCCCCEEEE
Confidence            9999999998866678999999999998  9999999999999999985    3 3455678999999 99999999986


Q ss_pred             ee-ceEEEEeec
Q 021744          290 SV-SFIMFIGQN  300 (308)
Q Consensus       290 s~-s~~i~~~~~  300 (308)
                      ++ +..|.++..
T Consensus       283 ~s~Dg~i~iwd~  294 (337)
T d1gxra_         283 TGKDNLLNAWRT  294 (337)
T ss_dssp             EETTSEEEEEET
T ss_pred             EeCCCeEEEEEC
Confidence            65 555655543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.2e-31  Score=226.51  Aligned_cols=229  Identities=10%  Similarity=0.025  Sum_probs=186.8

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcc-cccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCc-eeeeEe
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN-INNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGF-KLLTQL  146 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~-~~~~~~  146 (308)
                      +++|+|+|++ |+|+.|+.|+|||+++++... ....+|...|.++.|+|++.+ ++++.|+.|++||+.++. +....+
T Consensus        12 ~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~   91 (371)
T d1k8kc_          12 CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI   91 (371)
T ss_dssp             EEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEEC
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccc
Confidence            7999999999 999999999999997765432 234678888999999999976 889999999999998762 234456


Q ss_pred             eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-----CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcC
Q 021744          147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-----LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQ  218 (308)
Q Consensus       147 ~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-----~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~  218 (308)
                      .+|...|.+++|+|+++.|++++.|+++++|++..........     +...+.++  .|++++|++++ |++|++||+.
T Consensus        92 ~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~  171 (371)
T d1k8kc_          92 LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY  171 (371)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECC
T ss_pred             ccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeec
Confidence            7889999999999999999999999999999987654332222     55667766  47899999876 9999999986


Q ss_pred             CCc------------------ee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeE
Q 021744          219 TNT------------------DL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNR  277 (308)
Q Consensus       219 ~~~------------------~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~  277 (308)
                      ...                  .. ....|...|.+++|+|+  +|++++.|+.|++||+.++    +.+..+..|..+|.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~  247 (371)
T d1k8kc_         172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK----MAVATLASETLPLL  247 (371)
T ss_dssp             CTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT----TEEEEEECSSCCEE
T ss_pred             cCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecc----cceeeeecccccce
Confidence            532                  22 45678889999999999  9999999999999999987    77888889999999


Q ss_pred             E-EEecCCCeEEEee--ceEEEEeecCce
Q 021744          278 A-HFSRDVTSLLGSV--SFIMFIGQNNKG  303 (308)
Q Consensus       278 ~-~~s~d~~~l~~s~--s~~i~~~~~~~~  303 (308)
                      + +|+||+++|+++.  ...+|.+....+
T Consensus       248 s~~fs~d~~~la~g~d~~~~~~~~~~~~~  276 (371)
T d1k8kc_         248 AVTFITESSLVAAGHDCFPVLFTYDSAAG  276 (371)
T ss_dssp             EEEEEETTEEEEEETTSSCEEEEEETTTT
T ss_pred             eeeecCCCCEEEEEcCCceEEEEeeCCCc
Confidence            9 9999998887654  445666655443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-30  Score=216.42  Aligned_cols=255  Identities=15%  Similarity=0.228  Sum_probs=192.9

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      |.+|||||.|++|++||..++           . ....+.+|...  +++|+|+  + ++++.|+++++|+.........
T Consensus        27 g~~l~sgs~Dg~i~vWd~~~~-----------~-~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~   92 (342)
T d2ovrb2          27 GNRIVSGSDDNTLKVWSAVTG-----------K-CLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHT   92 (342)
T ss_dssp             TTEEEEEETTSCEEEEETTTC-----------C-EEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCC-----------C-EEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceec
Confidence            678999999999999999877           2 12335678777  7888764  7 9999999999999864431110


Q ss_pred             ccc------e-------------------------------eeee-eeeeeeecCCceEEeeCCCeEEEEEcCCCceeee
Q 021744          103 NNR------A-------------------------------VIKT-DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLT  144 (308)
Q Consensus       103 ~~~------~-------------------------------~~~~-~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~  144 (308)
                      ...      .                               .... ............+.++.|+.|++||.... +.+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~  171 (342)
T d2ovrb2          93 LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE-TCLH  171 (342)
T ss_dssp             ECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT-EEEE
T ss_pred             ccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccc-eeeE
Confidence            000      0                               0000 00111112223477889999999999988 7888


Q ss_pred             EeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCce
Q 021744          145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTD  222 (308)
Q Consensus       145 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~  222 (308)
                      .+.+|...+..+.+  ++.++++++.||+|++||++.++++..+. +...+.++.+++++|++++ |+.|++||+...+.
T Consensus       172 ~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  249 (342)
T d2ovrb2         172 TLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC  249 (342)
T ss_dssp             EECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCE
T ss_pred             EEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEecccccc
Confidence            89999887666555  67899999999999999999999998887 6777888888888988876 99999999998876


Q ss_pred             e-eee---CCCCCEEEEEEeCCEEEEEcCCCeEEEEEcCCCCcccccceec-----cccCCCeEE-EEecCCCeEEEee-
Q 021744          223 L-SLS---GPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASL-----KVHTDSNRA-HFSRDVTSLLGSV-  291 (308)
Q Consensus       223 ~-~~~---~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~v~~-~~s~d~~~l~~s~-  291 (308)
                      . .+.   .|...+.++.++++++++|+.||.|++||++++    +.+.++     .+|...|++ +|+|++.+++++. 
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg----~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~  325 (342)
T d2ovrb2         250 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG----EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR  325 (342)
T ss_dssp             EEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTC----CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS
T ss_pred             cccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCC----CEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeC
Confidence            5 333   467789999999889999999999999999987    555544     357788999 9999998887654 


Q ss_pred             ----ceEEEEeecC
Q 021744          292 ----SFIMFIGQNN  301 (308)
Q Consensus       292 ----s~~i~~~~~~  301 (308)
                          ...|+++.=+
T Consensus       326 dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         326 NGTEETKLLVLDFD  339 (342)
T ss_dssp             SSSSCCEEEEEECC
T ss_pred             CCCCeeEEEEEeCC
Confidence                2356666533

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.9e-31  Score=224.81  Aligned_cols=224  Identities=8%  Similarity=-0.011  Sum_probs=174.4

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcc
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      .+.+||+++.|+.|++|+...+.          ......+.+|...  +++|+|++++ ++++.|++|+|||+.+++...
T Consensus        18 dg~~la~~~~~~~i~iw~~~~~~----------~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~   87 (371)
T d1k8kc_          18 DRTQIAICPNNHEVHIYEKSGNK----------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP   87 (371)
T ss_dssp             TSSEEEEECSSSEEEEEEEETTE----------EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred             CCCEEEEEeCCCEEEEEECCCCC----------EEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccc
Confidence            36789999999999999987540          1112335688887  8999999999 999999999999997664332


Q ss_pred             c-ccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCce---eeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEE
Q 021744          102 I-NNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFK---LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRV  176 (308)
Q Consensus       102 ~-~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~  176 (308)
                      . ....+...+.++.|+|++.. ++++.|+.|++|++.....   .......|...|.+++|+|++++|++|+.|++|++
T Consensus        88 ~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v  167 (371)
T d1k8kc_          88 TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI  167 (371)
T ss_dssp             EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEE
Confidence            2 23445667999999999976 8899999999999876521   23345578999999999999999999999999999


Q ss_pred             EeCCCCe------------------EEEEEe-CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEE
Q 021744          177 WDCASGQ------------------CAGVIN-LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVY  233 (308)
Q Consensus       177 wd~~~~~------------------~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~  233 (308)
                      ||+....                  .+.... +...+.++  .+++++|++++ |+.|++||+.+++.+ .+..|..+|.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  247 (371)
T d1k8kc_         168 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLL  247 (371)
T ss_dssp             EECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEE
T ss_pred             EeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccce
Confidence            9986532                  222222 45556654  57889998776 999999999998877 7888999999


Q ss_pred             EEEEeCC-EEEEEcCCCeEEEEEcCC
Q 021744          234 AMAVGND-LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       234 ~~~~~~~-~l~~g~~dg~i~iwd~~~  258 (308)
                      +++|+|+ .+++++.|+.+++|....
T Consensus       248 s~~fs~d~~~la~g~d~~~~~~~~~~  273 (371)
T d1k8kc_         248 AVTFITESSLVAAGHDCFPVLFTYDS  273 (371)
T ss_dssp             EEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             eeeecCCCCEEEEEcCCceEEEEeeC
Confidence            9999999 544555578777776543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.2e-31  Score=221.60  Aligned_cols=254  Identities=12%  Similarity=0.145  Sum_probs=181.2

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCeeeccCCCcEEEEECCCCCCcccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      +.+||||+.|++|++||..++           . ....+.+|...  +++|+|++..++|+.|++|++|++...+.....
T Consensus        23 ~~~l~tgs~Dg~i~vWd~~~~-----------~-~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~   90 (355)
T d1nexb2          23 DNYVITGADDKMIRVYDSINK-----------K-FLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVF   90 (355)
T ss_dssp             TTEEEEEETTTEEEEEETTTT-----------E-EEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCC-----------c-EEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccccccccccc
Confidence            568999999999999998876           1 12235678877  899998753399999999999999765422111


Q ss_pred             ccee-eeeeeeeeeecC---------------------------------------------------------------
Q 021744          104 NRAV-IKTDILCRNWVQ---------------------------------------------------------------  119 (308)
Q Consensus       104 ~~~~-~~~~~~~~~~~~---------------------------------------------------------------  119 (308)
                      .... ......+.+.++                                                               
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  170 (355)
T d1nexb2          91 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH  170 (355)
T ss_dssp             CCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEE
T ss_pred             ccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccc
Confidence            1100 001111222222                                                               


Q ss_pred             Cce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE
Q 021744          120 GNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM  197 (308)
Q Consensus       120 ~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~  197 (308)
                      +.. +.+..|+.|++||+.++ +.+..+.++...+.++.++|++.++++++.|++|++||+++++.+..+. |...+.++
T Consensus       171 ~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~  249 (355)
T d1nexb2         171 GNIVVSGSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL  249 (355)
T ss_dssp             TTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEE
T ss_pred             cceeeeecccceeeeeecccc-cceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccccc
Confidence            222 44555666666666665 5566667788889999999999999999999999999999999999888 77888888


Q ss_pred             EcCCCEEEEEc-CCcEEEEEcCCCceeeeeCCCCCEEEE-EEeCC-EEEEEcCCCeEEEEEcCCCCcccccce-eccccC
Q 021744          198 ISEGPWIFIGV-TNFVKAWNTQTNTDLSLSGPVGQVYAM-AVGND-LLFAGTQDGAILAWKFNVTTNCFEPAA-SLKVHT  273 (308)
Q Consensus       198 ~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~v~~~-~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~~  273 (308)
                      ..++++|++++ |+.|++||+++.+.. +..|...+.++ .++++ .+++++.|+.|++||++++    +++. .+.+|.
T Consensus       250 ~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg----~~~~~~~~~~~  324 (355)
T d1nexb2         250 RLSDKFLVSAAADGSIRGWDANDYSRK-FSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSG----KLVHANILKDA  324 (355)
T ss_dssp             EECSSEEEEECTTSEEEEEETTTCCEE-EEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTC----CBCCSCTTTTC
T ss_pred             ccccceeeeeeccccccccccccccee-cccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCC----CEEEEEecCCC
Confidence            88888999877 999999999987655 33344444444 45556 4444456899999999987    5554 567899


Q ss_pred             CCeEE-EEecCCCeEEE-eeceE--EEEe
Q 021744          274 DSNRA-HFSRDVTSLLG-SVSFI--MFIG  298 (308)
Q Consensus       274 ~~v~~-~~s~d~~~l~~-s~s~~--i~~~  298 (308)
                      ..|.+ +|+|+. ++++ +.+..  ||++
T Consensus       325 ~~V~~v~~~~~~-~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         325 DQIWSVNFKGKT-LVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             SEEEEEEEETTE-EEEEEESSSCEEEEEE
T ss_pred             CCEEEEEEcCCe-EEEEEECCCcEEEEEE
Confidence            99999 999874 4443 33544  4444

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.2e-29  Score=217.08  Aligned_cols=264  Identities=17%  Similarity=0.263  Sum_probs=200.5

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      .........++.+.+|+.........       .+ ....+|.+.  +++|+|+|++ |+|+ |++|+|||+.+++.+..
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l-~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~   98 (388)
T d1erja_          28 VPDALKKQTNDYYILYNPALPREIDV-------EL-HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVAR   98 (388)
T ss_dssp             SCTTSEEECSSCEEEECTTSCCCEEE-------EE-EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEE
T ss_pred             CccccccCCCCcEEEeCCCCCcceee-------ee-EeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEee
Confidence            34456777888999999664311000       00 112368777  9999999999 8876 99999999987764321


Q ss_pred             c-----------------cceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCE
Q 021744          103 N-----------------NRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDK  164 (308)
Q Consensus       103 ~-----------------~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (308)
                      .                 ...+...+.+++|+|++.. ++|+.|+.|++||..++ +.+..+.+|...|.++++++++..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~  177 (388)
T d1erja_          99 LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR-KIVMILQGHEQDIYSLDYFPSGDK  177 (388)
T ss_dssp             ECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSE
T ss_pred             ecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccc-cccccccccccccccccccccccc
Confidence            1                 1234445889999999977 88999999999999998 788899999999999999999999


Q ss_pred             EEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE-E--cCCCEEEEEc-CCcEEEEEcCCCcee-e-------eeCCCCCE
Q 021744          165 LYSGSKDETVRVWDCASGQCAGVINLGGEVGCM-I--SEGPWIFIGV-TNFVKAWNTQTNTDL-S-------LSGPVGQV  232 (308)
Q Consensus       165 l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~-~--~~~~~l~~~~-d~~i~~wd~~~~~~~-~-------~~~~~~~v  232 (308)
                      +++++.++.+++||.++..............++ +  .++++|++++ |+.|++||.+++... .       ..+|...|
T Consensus       178 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v  257 (388)
T d1erja_         178 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV  257 (388)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCE
T ss_pred             ccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCE
Confidence            999999999999999999888877755444433 2  4678888776 999999999988654 2       34688899


Q ss_pred             EEEEEeCC--EEEEEcCCCeEEEEEcCCCCcc--------cccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          233 YAMAVGND--LLFAGTQDGAILAWKFNVTTNC--------FEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       233 ~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      ++++|+|+  +|++++.||.|++||+......        .........|...+.+ +|+|++++|++++ +..|.++.
T Consensus       258 ~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd  336 (388)
T d1erja_         258 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD  336 (388)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred             EEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            99999998  9999999999999999865321        1223344578889999 9999999998665 55555554

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.2e-29  Score=208.04  Aligned_cols=234  Identities=15%  Similarity=0.169  Sum_probs=201.9

Q ss_pred             CCCCccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEE
Q 021744           60 LPPAATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWT  135 (308)
Q Consensus        60 ~~~~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd  135 (308)
                      ....++||.+.  +++|+|++++ |||+.|++|+|||+.+++... ....|...+..+.+++++.. +++..++.+.+|+
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~-~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER-TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD   87 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE-EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEE-EEeCCCCcEEEEeeeccccccccccccccccccc
Confidence            34457899988  9999999999 999999999999998887653 34567778999999999977 7888999999999


Q ss_pred             cCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCc
Q 021744          136 VGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNF  211 (308)
Q Consensus       136 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~  211 (308)
                      .... +....+.+|...+.++.++|+++.+++++.|+.+++||+++++.+..+. +...+.++  .+++++|++++ |+.
T Consensus        88 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  166 (317)
T d1vyhc1          88 FQGF-ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT  166 (317)
T ss_dssp             TTSS-CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccc-ccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCe
Confidence            9888 6777888899999999999999999999999999999999999988887 55666655  46788998776 999


Q ss_pred             EEEEEcCCCcee-eeeCCCCCEEEEEEeCC----------------------EEEEEcCCCeEEEEEcCCCCccccccee
Q 021744          212 VKAWNTQTNTDL-SLSGPVGQVYAMAVGND----------------------LLFAGTQDGAILAWKFNVTTNCFEPAAS  268 (308)
Q Consensus       212 i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~----------------------~l~~g~~dg~i~iwd~~~~~~~~~~~~~  268 (308)
                      |++|++.+++.. .+..|...+.++.++|+                      ++++++.|+.|++||++++    +++.+
T Consensus       167 v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~----~~~~~  242 (317)
T d1vyhc1         167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG----MCLMT  242 (317)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT----EEEEE
T ss_pred             EEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC----cEEEE
Confidence            999999998877 78889999999998762                      5889999999999999987    78889


Q ss_pred             ccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          269 LKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       269 ~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      +.+|...+.+ +|+|++++|++++ +..|.++.
T Consensus       243 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  275 (317)
T d1vyhc1         243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD  275 (317)
T ss_dssp             EECCSSCEEEEEECSSSSCEEEEETTTEEEEEC
T ss_pred             EeCCCCCEEEEEECCCCCEEEEEECCCeEEEEE
Confidence            9999999999 9999999998665 54554443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=2.9e-29  Score=207.36  Aligned_cols=232  Identities=9%  Similarity=0.082  Sum_probs=183.9

Q ss_pred             Cccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCC
Q 021744           63 AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDG  139 (308)
Q Consensus        63 ~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~  139 (308)
                      .+.||...  +++|+|++++ +||+.|++|++||+++++........|...+.++.|++++.+++++.|+.+++|+....
T Consensus         7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~   86 (299)
T d1nr0a2           7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGS   86 (299)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSS
T ss_pred             EcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCCc
Confidence            46799888  9999999999 99999999999999988877666667788899999999999989999999999998654


Q ss_pred             c--eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeE--EEEcCCCEEEEEc-CCcEEE
Q 021744          140 F--KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG--CMISEGPWIFIGV-TNFVKA  214 (308)
Q Consensus       140 ~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~-d~~i~~  214 (308)
                      .  ........+...+.+++++|++..+++++ ++.+++|+..  +. ..........  ++.++++++++++ |+.|++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~--~~-~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~  162 (299)
T d1nr0a2          87 GVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG--KL-TEVPISYNSSCVALSNDKQFVAVGGQDSKVHV  162 (299)
T ss_dssp             SSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT--EE-EEEECSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             cccccccccccccccccccccccccccccccc-cccccccccc--cc-cccccccccccccccccccccccccccccccc
Confidence            2  11223345778899999999998777665 5689999854  22 2233333333  4468899998876 999999


Q ss_pred             EEcCCCcee--eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE
Q 021744          215 WNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG  289 (308)
Q Consensus       215 wd~~~~~~~--~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~  289 (308)
                      ||+++++..  ....|...|++++|+|+  +|++++.|+.|++||+.++.. ......+..|...|++ +|+|++++|++
T Consensus       163 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s  241 (299)
T d1nr0a2         163 YKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE-LAHTNSWTFHTAKVACVSWSPDNVRLAT  241 (299)
T ss_dssp             EEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE-ESCCCCCCCCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccceEE
Confidence            999988765  45678999999999998  999999999999999987532 2334566789999999 99999999986


Q ss_pred             ee-ceEEEEee
Q 021744          290 SV-SFIMFIGQ  299 (308)
Q Consensus       290 s~-s~~i~~~~  299 (308)
                      ++ +..|.++.
T Consensus       242 gs~dg~i~iwd  252 (299)
T d1nr0a2         242 GSLDNSVIVWN  252 (299)
T ss_dssp             EETTSCEEEEE
T ss_pred             EcCCCEEEEEE
Confidence            65 55555554

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.9e-30  Score=220.23  Aligned_cols=260  Identities=10%  Similarity=0.093  Sum_probs=179.1

Q ss_pred             CCceEEecCCCeEEEeecCCCCC-CCCCcccccCCCCCCccccccceeEEec---CCCe-eeccCCCcEEEEECCCCCCc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNR-FPCPYLHRELPLPPAATANGAAAKRFAN---NTWG-RNNNFNNHSNNYRAGNSKNS  100 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~~~~~~~~~gh~~~~i~~s~---~g~~-~s~~~d~~i~vwd~~~~~~~  100 (308)
                      +.+++|+|.|++||+||....+. .+......... ......|.........   ++.. ++++.|++|++|++......
T Consensus        24 ~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~  102 (393)
T d1sq9a_          24 NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET  102 (393)
T ss_dssp             SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT
T ss_pred             CCEEEEEECCCeEEEEECCCCCCCcccceeEeeee-ccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCce
Confidence            46899999999999999765521 11111111000 0000011111111111   2234 79999999999998544322


Q ss_pred             cccc---------ceeeeeeeeeeeecCC-----c-eEEeeCCCeEEEEEcCCCc-----------------eeeeEeeC
Q 021744          101 NINN---------RAVIKTDILCRNWVQG-----N-CMYGEKCKFLHSWTVGDGF-----------------KLLTQLEG  148 (308)
Q Consensus       101 ~~~~---------~~~~~~~~~~~~~~~~-----~-~~~g~~d~~i~iwd~~~~~-----------------~~~~~~~~  148 (308)
                      ....         ..+......+.+.++.     . +++++.|+.+++|++....                 ........
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (393)
T d1sq9a_         103 KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT  182 (393)
T ss_dssp             CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSS
T ss_pred             eeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccC
Confidence            1111         1122224445555443     2 3788999999999975321                 01111223


Q ss_pred             cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-------CCCeeEEE--EcCCCEEEEEc-CC---cEEEE
Q 021744          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-------LGGEVGCM--ISEGPWIFIGV-TN---FVKAW  215 (308)
Q Consensus       149 h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-------~~~~v~~~--~~~~~~l~~~~-d~---~i~~w  215 (308)
                      +...+.+++|+|++ +|++|+.|++|++||+++++++..+.       |..++.++  +|++++|++|+ |+   .|++|
T Consensus       183 ~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lw  261 (393)
T d1sq9a_         183 PSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY  261 (393)
T ss_dssp             SCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE
T ss_pred             CCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeec
Confidence            55678999999987 89999999999999999999888775       45677776  58899999886 65   48999


Q ss_pred             EcCCCcee-ee-------------eCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeE--
Q 021744          216 NTQTNTDL-SL-------------SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNR--  277 (308)
Q Consensus       216 d~~~~~~~-~~-------------~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~--  277 (308)
                      |+++++.+ .+             .+|...|++++|+|+  +|++|+.|++|++||+.++    +++.++.+|...|.  
T Consensus       262 d~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g----~~~~~l~gH~~~v~~~  337 (393)
T d1sq9a_         262 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK----ERITTLNMHCDDIEIE  337 (393)
T ss_dssp             ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----EEEEEEECCGGGCSSG
T ss_pred             ccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC----CEEEEECCcCCcccCC
Confidence            99988755 33             479999999999999  9999999999999999998    88999999988774  


Q ss_pred             --E-EEecCCCeEEEee
Q 021744          278 --A-HFSRDVTSLLGSV  291 (308)
Q Consensus       278 --~-~~s~d~~~l~~s~  291 (308)
                        . +|+|++..++.++
T Consensus       338 ~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         338 EDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             GGCCCBCTTSCBCSSCC
T ss_pred             ccEEEECCCCCEEEEcc
Confidence              4 8999998877544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.6e-29  Score=212.13  Aligned_cols=258  Identities=11%  Similarity=0.071  Sum_probs=184.5

Q ss_pred             CCceEEecCC-CeEEEeecCCCCCCCCCcccccCCCCCCccccccc---eeEEec--CCCe-eeccCCCcEEEEECCCCC
Q 021744           26 GGLSTADTRQ-KVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA---AKRFAN--NTWG-RNNNFNNHSNNYRAGNSK   98 (308)
Q Consensus        26 ~~~~~s~s~d-~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~---~i~~s~--~g~~-~s~~~d~~i~vwd~~~~~   98 (308)
                      +..||.++.+ ..|+.|+....          ..+....+.+|...   +++|+|  ++.+ |+|+.|++|+|||+..++
T Consensus        29 ~~~la~~~~~~~~i~~~~~~~~----------~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          29 TNAIAYPCGKSAFVRCLDDGDS----------KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             TTEEEEEETTEEEEEECCSSCC----------SSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CCEEEEEeCCCEEEEEEeCCCC----------CccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            4556665544 45788876544          01222334566433   899998  4567 999999999999996554


Q ss_pred             Cccccc-------ceeeeeeeeeeeecCCce-EE--eeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCE-EEE
Q 021744           99 NSNINN-------RAVIKTDILCRNWVQGNC-MY--GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDK-LYS  167 (308)
Q Consensus        99 ~~~~~~-------~~~~~~~~~~~~~~~~~~-~~--g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s  167 (308)
                      ......       ..+...+..+.|++++.. ++  ++.++.+++|+..++ +.+..+.+|...|.+++|+|++.+ +++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~  177 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG-NSLGEVSGHSQRINACHLKQSRPMRSMT  177 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC-CEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred             ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccc-ccceeeeecccccccccccccccceEEE
Confidence            332211       223445888999999966 33  345788999999988 788899999999999999998865 788


Q ss_pred             eeCCCcEEEEeCCCCeEEEEEe----CCCeeEEE--EcC-CCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEE----E
Q 021744          168 GSKDETVRVWDCASGQCAGVIN----LGGEVGCM--ISE-GPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVY----A  234 (308)
Q Consensus       168 ~s~dg~v~~wd~~~~~~~~~~~----~~~~v~~~--~~~-~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~----~  234 (308)
                      ++.|+.+++||+++.+....+.    +...+.++  .|+ +.++++++ |+.|++||+++++.+ .+.+|..++.    +
T Consensus       178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s  257 (325)
T d1pgua1         178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA  257 (325)
T ss_dssp             EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred             eecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceee
Confidence            9999999999999888777765    44556665  454 67788665 999999999999887 6777776654    4


Q ss_pred             EEEeCC-EEEEEcCCCeEEEEEcCCCCcccccceeccccCCC--eEE---EEecCCCeEEEeeceEEEEe
Q 021744          235 MAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDS--NRA---HFSRDVTSLLGSVSFIMFIG  298 (308)
Q Consensus       235 ~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--v~~---~~s~d~~~l~~s~s~~i~~~  298 (308)
                      +.+.+. +|++++.|+.|+|||++++    +++..+..|...  +..   .+.+++.++.++.+..|.++
T Consensus       258 ~~~~dg~~l~s~s~D~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vw  323 (325)
T d1pgua1         258 LSWLDSQKFATVGADATIRVWDVTTS----KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY  323 (325)
T ss_dssp             EEESSSSEEEEEETTSEEEEEETTTT----EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEE
T ss_pred             eeccCCCEEEEEeCCCeEEEEECCCC----CEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEE
Confidence            444444 9999999999999999987    667766655443  222   44444433334446666555

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-28  Score=201.53  Aligned_cols=255  Identities=16%  Similarity=0.230  Sum_probs=191.8

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN  104 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~  104 (308)
                      +.+||||+.|++|++||..++           . ....+.+|.....++++++++ ++|+.|++|++|++..+.......
T Consensus        25 ~~~l~sgs~Dg~i~vWd~~~~-----------~-~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~   92 (293)
T d1p22a2          25 DQKIVSGLRDNTIKIWDKNTL-----------E-CKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLI   92 (293)
T ss_dssp             SSEEEEEESSSCEEEEESSSC-----------C-EEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred             CCEEEEEeCCCeEEEEECCCC-----------c-EEEEEecCCCCEeeeecccceeeccccccccccccccccccccccc
Confidence            678999999999999999876           1 223356787774456678889 999999999999997664432111


Q ss_pred             ceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCc--eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744          105 RAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGF--KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (308)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~  182 (308)
                        .............+..+++..++.+++|+..+..  .....+..|...+..+.+.+  ..+++++.|+.|++||++++
T Consensus        93 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~  168 (293)
T d1p22a2          93 --HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTC  168 (293)
T ss_dssp             --CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTC
T ss_pred             --ccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCC
Confidence              1111222333344455889999999999998653  33555677888888887765  57889999999999999999


Q ss_pred             eEEEEEe-CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcCCC
Q 021744          183 QCAGVIN-LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       183 ~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~  259 (308)
                      +.+..+. +...+..+.+++..++++. |+.|++||+++.+.+ ...++...+..+...+.+|++|+.||.|++||+...
T Consensus       169 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~  248 (293)
T d1p22a2         169 EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAA  248 (293)
T ss_dssp             CEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHH
T ss_pred             cEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcCCCEEEEEECCCC
Confidence            9998888 5566777777777888766 999999999999887 677888888776665559999999999999997643


Q ss_pred             Cc-----ccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEe
Q 021744          260 TN-----CFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIG  298 (308)
Q Consensus       260 ~~-----~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~  298 (308)
                      ..     ...++..+.+|...|.+ +|  ++.+|++++ +..|.+|
T Consensus       249 ~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iW  292 (293)
T d1p22a2         249 LDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIW  292 (293)
T ss_dssp             TSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEE
T ss_pred             ccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEe
Confidence            11     12356677899999988 88  456777554 6667665

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.2e-28  Score=200.00  Aligned_cols=239  Identities=9%  Similarity=0.047  Sum_probs=184.6

Q ss_pred             ceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCeeeccCCCcEEEEECCCCCCcccccc
Q 021744           28 LSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNR  105 (308)
Q Consensus        28 ~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~  105 (308)
                      .|+||+.|++|++||..++                 ..+|...  ++++++++.+++++.|++|++|++...+       
T Consensus        23 ~l~sgs~Dg~v~~Wd~~~~-----------------~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~-------   78 (287)
T d1pgua2          23 PLISGSYDGRIMEWSSSSM-----------------HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE-------   78 (287)
T ss_dssp             TTEEEETTSCEEETTTTEE-----------------ECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE-------
T ss_pred             cEEEEeCCCeEEEEECCCC-----------------CCCCCCCEEEEEecCCCeEEEEeeccccccccccccc-------
Confidence            4999999999999998765                 1356666  7788877655999999999999984321       


Q ss_pred             eeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCC-cEEEEeCCCCeE
Q 021744          106 AVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE-TVRVWDCASGQC  184 (308)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg-~v~~wd~~~~~~  184 (308)
                       ....+..+.+.+++..+..+.++.+.+|+..++ +.+..+..+ ..  ..++++++..++.++.++ .+++|++...+.
T Consensus        79 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~  153 (287)
T d1pgua2          79 -FGSQPKVASANNDGFTAVLTNDDDLLILQSFTG-DIIKSVRLN-SP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV  153 (287)
T ss_dssp             -CSSCEEEEEECSSSEEEEEETTSEEEEEETTTC-CEEEEEECS-SC--EEEEEECSSEEEEEETTTSCEEEEETTEEEE
T ss_pred             -cccceeeeeeccCCceEEEeecccceeeeccce-eeeeecccc-ce--eeeeeccCcceeeeccccceeeeeeccccce
Confidence             222355667788887777777888999999888 667666643 33  345667777887777765 799999987766


Q ss_pred             EEEEe--CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCcee--eeeCCCCCEEEEEEeCC------------EEEEE
Q 021744          185 AGVIN--LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND------------LLFAG  245 (308)
Q Consensus       185 ~~~~~--~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~--~~~~~~~~v~~~~~~~~------------~l~~g  245 (308)
                      ...+.  +...+.++  .+++++|++|+ |+.|++||+.+++..  .+..|..+|.+++|+|.            +|++|
T Consensus       154 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sg  233 (287)
T d1pgua2         154 SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG  233 (287)
T ss_dssp             EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEE
T ss_pred             eeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEee
Confidence            66554  55667665  57899999877 999999999998876  56789999999999862            79999


Q ss_pred             cCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEeeceEEEEe
Q 021744          246 TQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSVSFIMFIG  298 (308)
Q Consensus       246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~s~~i~~~  298 (308)
                      +.|+.|++||++.+.   +.+..+.+|...|++ +|+|++.++.++.+..|.+|
T Consensus       234 s~D~~i~iw~~~~~~---~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW  284 (287)
T d1pgua2         234 SLDTNIFIYSVKRPM---KIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRW  284 (287)
T ss_dssp             ETTSCEEEEESSCTT---CCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEE
T ss_pred             cCCCeEEEEECCCCC---eEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEE
Confidence            999999999998752   567778899999999 99999865555555555554

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.4e-28  Score=203.21  Aligned_cols=226  Identities=8%  Similarity=-0.001  Sum_probs=168.9

Q ss_pred             CCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eec--cCCCcEEEEECCCCCC
Q 021744           25 GGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNN--NFNNHSNNYRAGNSKN   99 (308)
Q Consensus        25 ~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~--~~d~~i~vwd~~~~~~   99 (308)
                      .+.+||||+.|++|++||...........    .........|.+.  +++|+|++.+ +++  +.++.+++|+.++++.
T Consensus        76 ~g~~lasgs~Dg~i~iWd~~~~~~~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~  151 (325)
T d1pgua1          76 GSQYLCSGDESGKVIVWGWTFDKESNSVE----VNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS  151 (325)
T ss_dssp             TCCEEEEEETTSEEEEEEEEEEGGGTEEE----EEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE
T ss_pred             CCCEEEEEeCCCCEEEeeecCCcceeeee----cccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccc
Confidence            45789999999999999976541100000    0011112344554  7999999998 544  4578899999987765


Q ss_pred             cccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEe---eCcccceEEEEEeCC-CCEEEEeeCCCc
Q 021744          100 SNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQL---EGHQKVVSGITLPSG-SDKLYSGSKDET  173 (308)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~---~~h~~~v~~~~~~~~-~~~l~s~s~dg~  173 (308)
                      +. ....|...+..+.|.+++..  ++++.|+.+++||+.+. +....+   .+|...|.+++|+|+ +.++++++.|+.
T Consensus       152 ~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~  229 (325)
T d1pgua1         152 LG-EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK  229 (325)
T ss_dssp             EE-ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred             ce-eeeecccccccccccccccceEEEeeccccccccccccc-ccceecccccCCCCccEEeeeccccceeccccccccc
Confidence            43 34557777999999998853  78999999999999877 444433   467788999999996 588999999999


Q ss_pred             EEEEeCCCCeEEEEEe-CCCee----EEE-EcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCC----EEEEEEeCC-
Q 021744          174 VRVWDCASGQCAGVIN-LGGEV----GCM-ISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQ----VYAMAVGND-  240 (308)
Q Consensus       174 v~~wd~~~~~~~~~~~-~~~~v----~~~-~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~----v~~~~~~~~-  240 (308)
                      |++||+++++.+.++. +..++    .+. ++++++|++++ |+.|++||+++++++ .+..|...    ..++.+.++ 
T Consensus       230 i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (325)
T d1pgua1         230 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG  309 (325)
T ss_dssp             EEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETT
T ss_pred             eeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCC
Confidence            9999999999998887 34333    333 47889988766 999999999999887 45544432    345555666 


Q ss_pred             EEEEEcCCCeEEEEEc
Q 021744          241 LLFAGTQDGAILAWKF  256 (308)
Q Consensus       241 ~l~~g~~dg~i~iwd~  256 (308)
                      +|++++.||.|++||+
T Consensus       310 ~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         310 RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEETTSCEEEEET
T ss_pred             EEEEEECCCEEEEEEC
Confidence            9999999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=1.4e-25  Score=187.38  Aligned_cols=238  Identities=13%  Similarity=0.164  Sum_probs=187.9

Q ss_pred             Cccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCC
Q 021744           63 AATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGD  138 (308)
Q Consensus        63 ~~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~  138 (308)
                      .++||.+.  +++|+|++.+ |||+.||+|+|||+.+++.+. ....|...+..+.|+|++.. ++++.|+.+++|+...
T Consensus        50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~  128 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH-AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT  128 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE-EEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSS
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE-EEecccccEEeeEeeccceeeeeecccceeecccccc
Confidence            46799998  9999999999 999999999999998876543 33456777999999999977 8899999999999875


Q ss_pred             Cc---eeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc-CCc
Q 021744          139 GF---KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV-TNF  211 (308)
Q Consensus       139 ~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~-d~~  211 (308)
                      ..   .....+.+|........... +..+.....|.....+............ ....+...  .+.+.+++++. |+.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  207 (340)
T d1tbga_         129 REGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS  207 (340)
T ss_dssp             SCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred             cccccccceeccccccccccccccc-ccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCce
Confidence            42   34556777877766666554 5678888999999999998877666655 44444444  46677888766 999


Q ss_pred             EEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCccccccee--ccccCCCeEE-EEecCCC
Q 021744          212 VKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAAS--LKVHTDSNRA-HFSRDVT  285 (308)
Q Consensus       212 i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~v~~-~~s~d~~  285 (308)
                      |++||+++++.. .+.+|...|++++|+|+  +|++|+.|+.|++||+...    ..+..  ...+...+.. +|+|+++
T Consensus       208 v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~----~~~~~~~~~~~~~~i~~~~~s~~~~  283 (340)
T d1tbga_         208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD----QELMTYSHDNIICGITSVSFSKSGR  283 (340)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCTTCCSCEEEEEECSSSC
T ss_pred             EEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc----ccccccccccccCceEEEEECCCCC
Confidence            999999999887 78899999999999998  9999999999999999986    44433  3466777888 9999999


Q ss_pred             eEEEee-ceEEEEe--ecCceeEE
Q 021744          286 SLLGSV-SFIMFIG--QNNKGVVC  306 (308)
Q Consensus       286 ~l~~s~-s~~i~~~--~~~~~~~~  306 (308)
                      +|++++ +..|.++  .+.+.+..
T Consensus       284 ~l~~g~~dg~i~iwd~~~~~~~~~  307 (340)
T d1tbga_         284 LLLAGYDDFNCNVWDALKADRAGV  307 (340)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEE
T ss_pred             EEEEEECCCEEEEEECCCCcEEEE
Confidence            998765 4444444  44444433

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.1e-26  Score=193.42  Aligned_cols=252  Identities=9%  Similarity=-0.016  Sum_probs=173.2

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCC-e-eeccCCCcEEEEECCCCCCcc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTW-G-RNNNFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~-~-~s~~~d~~i~vwd~~~~~~~~  101 (308)
                      +.+||++|.|++||+||......         ........+|...  +++|+|++. + ++|+.|++|++|++.......
T Consensus        23 ~~~L~s~s~Dg~v~iwd~~~~~~---------~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~   93 (342)
T d1yfqa_          23 KSLLLITSWDGSLTVYKFDIQAK---------NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ   93 (342)
T ss_dssp             GTEEEEEETTSEEEEEEEETTTT---------EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE
T ss_pred             CCEEEEEECCCeEEEEEccCCCc---------ceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccc
Confidence            46899999999999999876511         0001112356666  899999765 4 999999999999997765543


Q ss_pred             cccceeeeeeeeeeeecCCc-eEEeeCCCeEEEEEcCCCc---eeeeEeeCc--ccceEEEEEeCCCCEEEEeeCCCcEE
Q 021744          102 INNRAVIKTDILCRNWVQGN-CMYGEKCKFLHSWTVGDGF---KLLTQLEGH--QKVVSGITLPSGSDKLYSGSKDETVR  175 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~-~~~g~~d~~i~iwd~~~~~---~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~v~  175 (308)
                      .....+........+.++.. .++++.++.+++||+++..   ........+  ......+.+.+.+..+++++.|+.|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  173 (342)
T d1yfqa_          94 ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQ  173 (342)
T ss_dssp             ECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEE
T ss_pred             cccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEE
Confidence            33333333333444444544 4889999999999986542   122222222  23345667778888999999999999


Q ss_pred             EEeCCCCeEEEEEe----CCCeeEEE--E-cCCCEEEEEc-CCcEEEEEcCCCcee----------------eeeCCCCC
Q 021744          176 VWDCASGQCAGVIN----LGGEVGCM--I-SEGPWIFIGV-TNFVKAWNTQTNTDL----------------SLSGPVGQ  231 (308)
Q Consensus       176 ~wd~~~~~~~~~~~----~~~~v~~~--~-~~~~~l~~~~-d~~i~~wd~~~~~~~----------------~~~~~~~~  231 (308)
                      +||+...+......    ......+.  . .++..+++++ |+.+.+|+.......                ....|...
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (342)
T d1yfqa_         174 WFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP  253 (342)
T ss_dssp             EEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCC
T ss_pred             EEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccccc
Confidence            99998765433322    22333332  2 3466777665 999999998654211                12356678


Q ss_pred             EEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          232 VYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       232 v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      +++++|+|+  +|++|+.||.|++||+.++    +.+.++..+. .... +|+|++++|+++.
T Consensus       254 v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~----~~l~~~~~~~-~~~~~~~s~~~~~l~~a~  311 (342)
T d1yfqa_         254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTR----KKIKNFAKFN-EDSVVKIACSDNILCLAT  311 (342)
T ss_dssp             EEEEEECTTTCCEEEEETTSCEEEEETTTT----EEEEECCCCS-SSEEEEEEECSSEEEEEE
T ss_pred             ceeEEecCCccEEEEECCCCEEEEEECCCC----cEEEEecCCC-CCEEEEEEeCCCEEEEEE
Confidence            999999998  9999999999999999987    6677776443 3444 8999999888544

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.7e-26  Score=190.95  Aligned_cols=237  Identities=16%  Similarity=0.142  Sum_probs=182.5

Q ss_pred             CCCCCccccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEc
Q 021744           59 PLPPAATANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTV  136 (308)
Q Consensus        59 ~~~~~~~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~  136 (308)
                      |....++||... -.++++++++ |||+.|++|+|||+.+++.+. ...+|...|.+++|++++.+++++.|+.|++|+.
T Consensus         3 p~~~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~-~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~   81 (355)
T d1nexb2           3 PQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLL-QLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI   81 (355)
T ss_dssp             CEEEEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEE-EEECCSSCEEEEEEETTTEEEEEETTCCEEEEET
T ss_pred             CCcEEECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCcEEE-EEECCCCCEEEEEEcCCCEEEEEecccccccccc
Confidence            445567899887 2357778889 999999999999998886653 4466888899999999887799999999999999


Q ss_pred             CCCceeeeEeeCc--ccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe------------------------C
Q 021744          137 GDGFKLLTQLEGH--QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN------------------------L  190 (308)
Q Consensus       137 ~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~------------------------~  190 (308)
                      ... +.......+  ........+.+++.++++++.|++|++||+++...+....                        +
T Consensus        82 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d1nexb2          82 KKG-CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  160 (355)
T ss_dssp             TTT-EEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred             ccc-ccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence            988 554444433  3344556678888999999999999999998765543322                        1


Q ss_pred             CCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccc
Q 021744          191 GGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPA  266 (308)
Q Consensus       191 ~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~  266 (308)
                      ...+....+++++++.+. |+.|++||+++++.. ...++...+.++.++|+  ++++++.|+.|++||++++    ..+
T Consensus       161 ~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~----~~~  236 (355)
T d1nexb2         161 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG----ELM  236 (355)
T ss_dssp             SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC----CEE
T ss_pred             cccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccc----ccc
Confidence            222334456788888766 999999999999877 67788889999999998  9999999999999999987    778


Q ss_pred             eeccccCCCeEE-EEecCCCeEEEee-ceEEEEeecCce
Q 021744          267 ASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQNNKG  303 (308)
Q Consensus       267 ~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~~~~~  303 (308)
                      ..+.+|...|.+ +|++  ++|++++ +..|.++..+..
T Consensus       237 ~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~  273 (355)
T d1nexb2         237 YTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDY  273 (355)
T ss_dssp             EEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTC
T ss_pred             ccccccccccccccccc--ceeeeeeccccccccccccc
Confidence            889999999988 8864  5666444 666666654443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1e-25  Score=187.97  Aligned_cols=231  Identities=15%  Similarity=0.226  Sum_probs=171.9

Q ss_pred             CCCccccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCC
Q 021744           61 PPAATANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGD  138 (308)
Q Consensus        61 ~~~~~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~  138 (308)
                      ...++||.+. .-+++++|++ |||+.|++|+|||+.+++.+. ....|...+.++.+.++ ..++++.|+.+++|+...
T Consensus         9 ~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~-~~~~h~~~V~~v~~~~~-~l~s~s~D~~~~~~~~~~   86 (342)
T d2ovrb2           9 PKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLR-TLVGHTGGVWSSQMRDN-IIISGSTDRTLKVWNAET   86 (342)
T ss_dssp             CEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEE-ECCCCSSCEEEEEEETT-EEEEEETTSCEEEEETTT
T ss_pred             CEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCCEEE-EEeCCCCCEEEEEeCCC-ccccceeccccccccccc
Confidence            3457899987 2358889999 999999999999999887653 44667788988988864 568999999999999876


Q ss_pred             CceeeeEeeCcccce--------------------------------------EEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744          139 GFKLLTQLEGHQKVV--------------------------------------SGITLPSGSDKLYSGSKDETVRVWDCA  180 (308)
Q Consensus       139 ~~~~~~~~~~h~~~v--------------------------------------~~~~~~~~~~~l~s~s~dg~v~~wd~~  180 (308)
                      . ........+...+                                      ......+....+++++.|+.|++||.+
T Consensus        87 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~  165 (342)
T d2ovrb2          87 G-ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE  165 (342)
T ss_dssp             T-EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGG
T ss_pred             c-cceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecc
Confidence            5 2222222111111                                      111223345578888899999999999


Q ss_pred             CCeEEEEEe-CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcC
Q 021744          181 SGQCAGVIN-LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFN  257 (308)
Q Consensus       181 ~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~  257 (308)
                      ..+.+..+. +........+++.++++++ |+.|++||++.++.+ .+..|...+.++++++++|++++.|+.|++||+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~  245 (342)
T d2ovrb2         166 TETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK  245 (342)
T ss_dssp             GTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred             cceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEecc
Confidence            888888777 5556666778889988776 999999999999887 7888999999999999999999999999999998


Q ss_pred             CCCcccccceecc---ccCCCeEEEEecCCCeEEEee-ceEEEEee
Q 021744          258 VTTNCFEPAASLK---VHTDSNRAHFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       258 ~~~~~~~~~~~~~---~~~~~v~~~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      ..    +....+.   .|...+.+ +++++.++++++ +..|.++.
T Consensus       246 ~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~s~Dg~i~iwd  286 (342)
T d2ovrb2         246 TG----QCLQTLQGPNKHQSAVTC-LQFNKNFVITSSDDGTVKLWD  286 (342)
T ss_dssp             TC----CEEEEECSTTSCSSCEEE-EEECSSEEEEEETTSEEEEEE
T ss_pred             cc----cccccccccceeeeceee-cccCCCeeEEEcCCCEEEEEE
Confidence            86    4444444   34455554 444556777554 55666654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=4.9e-25  Score=189.24  Aligned_cols=214  Identities=8%  Similarity=0.065  Sum_probs=152.9

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCC-----Ce-eeccCCCcEEEEECCCCCC
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNT-----WG-RNNNFNNHSNNYRAGNSKN   99 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g-----~~-~s~~~d~~i~vwd~~~~~~   99 (308)
                      +.++++++.|++|++|+....+.......+...........+....+++.+++     .+ ++++.|+++++|++.....
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~  158 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  158 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence            45788999999999999765422111111111111111122222256676653     45 8999999999999853221


Q ss_pred             ccc-----------------ccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeee------EeeCcccceEEE
Q 021744          100 SNI-----------------NNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLT------QLEGHQKVVSGI  156 (308)
Q Consensus       100 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~------~~~~h~~~v~~~  156 (308)
                      ...                 ....+...+.++.|+|++.+++|+.|+.|++||+.++ +.+.      .+.+|..+|.++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~-~~~~~~~~~~~l~~h~~~V~~l  237 (393)
T d1sq9a_         159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL-RPLYNFESQHSMINNSNSIRSV  237 (393)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT-EEEEEEECCC---CCCCCEEEE
T ss_pred             ccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeeccc-ccccccccccccccccceEEEc
Confidence            000                 0111222367789999998899999999999999988 4544      345799999999


Q ss_pred             EEeCCCCEEEEeeCCCc---EEEEeCCCCeEEEEEe--------------CCCeeEEE--EcCCCEEEEEc-CCcEEEEE
Q 021744          157 TLPSGSDKLYSGSKDET---VRVWDCASGQCAGVIN--------------LGGEVGCM--ISEGPWIFIGV-TNFVKAWN  216 (308)
Q Consensus       157 ~~~~~~~~l~s~s~dg~---v~~wd~~~~~~~~~~~--------------~~~~v~~~--~~~~~~l~~~~-d~~i~~wd  216 (308)
                      +|+|++++|++|+.|++   |++||+++++.+..+.              |...|.++  .|++++|++++ |++|++||
T Consensus       238 ~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd  317 (393)
T d1sq9a_         238 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  317 (393)
T ss_dssp             EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             ccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence            99999999999999975   8999999999888774              55667766  47899999877 99999999


Q ss_pred             cCCCcee-eeeCCCCCEE----EEEEeCC
Q 021744          217 TQTNTDL-SLSGPVGQVY----AMAVGND  240 (308)
Q Consensus       217 ~~~~~~~-~~~~~~~~v~----~~~~~~~  240 (308)
                      +++++++ ++.+|.+.|.    .++|+|+
T Consensus       318 ~~~g~~~~~l~gH~~~v~~~~~~~~~~~~  346 (393)
T d1sq9a_         318 VKTKERITTLNMHCDDIEIEEDILAVDEH  346 (393)
T ss_dssp             TTTTEEEEEEECCGGGCSSGGGCCCBCTT
T ss_pred             CCCCCEEEEECCcCCcccCCccEEEECCC
Confidence            9999988 8889987664    4667776

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.2e-24  Score=175.78  Aligned_cols=214  Identities=15%  Similarity=0.267  Sum_probs=163.4

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eeccCCCcEEEEECCCCCCcccc-
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNIN-  103 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~-  103 (308)
                      +.+|+|++.|++|++|+...+..           ... ...+......+.+.... +++..++.+++|+.......... 
T Consensus        65 ~~~l~s~s~D~~i~~~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (293)
T d1p22a2          65 ERVIITGSSDSTVRVWDVNTGEM-----------LNT-LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR  132 (293)
T ss_dssp             SSEEEEEETTSCEEEEESSSCCE-----------EEE-ECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEE
T ss_pred             cceeecccccccccccccccccc-----------ccc-ccccccccccccccccceeecccccceeEeeccccccccccc
Confidence            57899999999999999887611           000 01111113455566666 99999999999999765433211 


Q ss_pred             -cceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744          104 -NRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (308)
Q Consensus       104 -~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~  182 (308)
                       ...+...+....+.+ ...++++.|+.|++||+.+. +.+..+.+|...+..+.++  +..+++++.|++|++||+++.
T Consensus       133 ~~~~~~~~v~~~~~~~-~~~~~~s~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~  208 (293)
T d1p22a2         133 VLVGHRAAVNVVDFDD-KYIVSASGDRTIKVWNTSTC-EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG  208 (293)
T ss_dssp             EECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC
T ss_pred             cccccccccccceecc-cccccccCCCceeeecCCCC-cEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccc
Confidence             122333344444332 34478889999999999998 7888999999999888876  468999999999999999999


Q ss_pred             eEEEEEe-CCCeeEEEEcCCCEEEEEc-CCcEEEEEcCCC---------cee-eeeCCCCCEEEEEEeCCEEEEEcCCCe
Q 021744          183 QCAGVIN-LGGEVGCMISEGPWIFIGV-TNFVKAWNTQTN---------TDL-SLSGPVGQVYAMAVGNDLLFAGTQDGA  250 (308)
Q Consensus       183 ~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~~wd~~~~---------~~~-~~~~~~~~v~~~~~~~~~l~~g~~dg~  250 (308)
                      +.+..+. +...+.++.+++.+|++++ |+.|++||+.+.         ..+ .+.+|.+.|++++|++.+|++|+.||+
T Consensus       209 ~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~  288 (293)
T d1p22a2         209 ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDT  288 (293)
T ss_dssp             CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSE
T ss_pred             eeeeeecccceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCE
Confidence            9988887 5666777788889988776 999999997532         223 678999999999998879999999999


Q ss_pred             EEEEE
Q 021744          251 ILAWK  255 (308)
Q Consensus       251 i~iwd  255 (308)
                      |++||
T Consensus       289 i~iWD  293 (293)
T d1p22a2         289 ILIWD  293 (293)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2e-24  Score=177.08  Aligned_cols=209  Identities=10%  Similarity=0.026  Sum_probs=154.9

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCeeeccCCCcEEEEECCCCCCcccccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNR  105 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~~s~~~d~~i~vwd~~~~~~~~~~~~  105 (308)
                      +..+++++.|+++++|+....           ..      ++....+++++++..+..+.++.+.+|+..+++....   
T Consensus        57 ~~~~~s~s~D~~v~~w~~~~~-----------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  116 (287)
T d1pgua2          57 AQEYSSISWDDTLKVNGITKH-----------EF------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKS---  116 (287)
T ss_dssp             TTCCEEEETTTEEEETTEEEE-----------EC------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEE---
T ss_pred             CCeEEEEeecccccccccccc-----------cc------ccceeeeeeccCCceEEEeecccceeeeccceeeeee---
Confidence            567899999999999987654           10      1111257788888774455666788999877654321   


Q ss_pred             eeeeeeeeeeeecCCce-EEeeCC-CeEEEEEcCCCceeeeEe-eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC
Q 021744          106 AVIKTDILCRNWVQGNC-MYGEKC-KFLHSWTVGDGFKLLTQL-EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (308)
Q Consensus       106 ~~~~~~~~~~~~~~~~~-~~g~~d-~~i~iwd~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~  182 (308)
                       .........+.+++.. +.++.+ +.+++|++... +....+ ..|...+++++|+|++.+|++++.||.|++||+.++
T Consensus       117 -~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~  194 (287)
T d1pgua2         117 -VRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL-EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR  194 (287)
T ss_dssp             -EECSSCEEEEEECSSEEEEEETTTSCEEEEETTEE-EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             -ccccceeeeeeccCcceeeeccccceeeeeecccc-ceeeeeeeccCCceeEEEeccCccccccccccccccceeeccc
Confidence             1111233455666644 555554 57999999876 343333 357889999999999999999999999999999998


Q ss_pred             eEEEEEe--CCCeeEEEE------------cCCCEEEEEc-CCcEEEEEcCCCc-ee-eeeCCCCCEEEEEEeCC-EEEE
Q 021744          183 QCAGVIN--LGGEVGCMI------------SEGPWIFIGV-TNFVKAWNTQTNT-DL-SLSGPVGQVYAMAVGND-LLFA  244 (308)
Q Consensus       183 ~~~~~~~--~~~~v~~~~------------~~~~~l~~~~-d~~i~~wd~~~~~-~~-~~~~~~~~v~~~~~~~~-~l~~  244 (308)
                      +.+....  |...+.++.            .++.++++|+ |++|++||+++.. .. .+.+|...|++++|+|+ .|++
T Consensus       195 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s  274 (287)
T d1pgua2         195 EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVS  274 (287)
T ss_dssp             EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEE
T ss_pred             ccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEE
Confidence            8765432  566677662            3467888776 9999999997744 34 56789999999999999 9999


Q ss_pred             EcCCCeEEEEEc
Q 021744          245 GTQDGAILAWKF  256 (308)
Q Consensus       245 g~~dg~i~iwd~  256 (308)
                      ++.|+.|++|++
T Consensus       275 ~g~D~~v~iW~i  286 (287)
T d1pgua2         275 SGADACIKRWNV  286 (287)
T ss_dssp             EETTSCEEEEEE
T ss_pred             EECCCeEEEEEE
Confidence            999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1e-23  Score=175.35  Aligned_cols=241  Identities=12%  Similarity=0.018  Sum_probs=168.7

Q ss_pred             ccccccc--eeEEecCCCe-eeccCCCcEEEEECCCCCCccc--ccceeeeeeeeeeeecCCc--eEEeeCCCeEEEEEc
Q 021744           64 ATANGAA--AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNI--NNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTV  136 (308)
Q Consensus        64 ~~gh~~~--~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~iwd~  136 (308)
                      .++|...  +|+|+|++++ |+|+.|++|+|||++++.....  ....|...|.+++|++++.  +++|+.|+.|++|++
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~   86 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeec
Confidence            4567776  8999999999 9999999999999976543222  2235677799999998763  388999999999999


Q ss_pred             CCCceeeeEeeCc-ccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe---------CCCeeEEEEcCCCEEEE
Q 021744          137 GDGFKLLTQLEGH-QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN---------LGGEVGCMISEGPWIFI  206 (308)
Q Consensus       137 ~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~---------~~~~v~~~~~~~~~l~~  206 (308)
                      ... ........+ ........+.++...+++++.|+++++||+++........         .......+.+.+..+++
T Consensus        87 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (342)
T d1yfqa_          87 IGS-PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIV  165 (342)
T ss_dssp             SSS-SSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEE
T ss_pred             ccc-cccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceee
Confidence            887 344444433 3444555666788899999999999999987543322221         11123344567777776


Q ss_pred             Ec-CCcEEEEEcCCCcee----eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccc-----------cce
Q 021744          207 GV-TNFVKAWNTQTNTDL----SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFE-----------PAA  267 (308)
Q Consensus       207 ~~-d~~i~~wd~~~~~~~----~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~-----------~~~  267 (308)
                      ++ |+.|++||++..+..    ....+...+.+..+.+.   .+++++.||.+.+|++........           ...
T Consensus       166 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  245 (342)
T d1yfqa_         166 GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL  245 (342)
T ss_dssp             EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT
T ss_pred             ecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeecc
Confidence            65 999999999877543    23345556777777665   899999999999999875432111           111


Q ss_pred             eccccCCCeEE-EEecCCCeEEEee-ceEEEEe--ecCceeE
Q 021744          268 SLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIG--QNNKGVV  305 (308)
Q Consensus       268 ~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~--~~~~~~~  305 (308)
                      ....|...+++ +|+|++.+|++++ +..|.+|  .+.+.+.
T Consensus       246 ~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~  287 (342)
T d1yfqa_         246 KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK  287 (342)
T ss_dssp             TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred             CCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEE
Confidence            22356677888 9999999998666 4445554  4444443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=1e-23  Score=177.56  Aligned_cols=248  Identities=8%  Similarity=0.006  Sum_probs=178.1

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eeccCC--CcEEEEECCCCCCc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNNFN--NHSNNYRAGNSKNS  100 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~~d--~~i~vwd~~~~~~~  100 (308)
                      |.++|+++ ++.|++|+...+           ....   .+|...  +++|+|||+. ++++.+  ..|++||+++++..
T Consensus        15 G~~~a~~~-~g~v~v~d~~~~-----------~~~~---~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~   79 (360)
T d1k32a3          15 GDLIAFVS-RGQAFIQDVSGT-----------YVLK---VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE   79 (360)
T ss_dssp             GGCEEEEE-TTEEEEECTTSS-----------BEEE---CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             CCEEEEEE-CCeEEEEECCCC-----------cEEE---ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE
Confidence            45677765 579999998776           1111   134444  8999999998 666544  37999999887654


Q ss_pred             ccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEee----------
Q 021744          101 NINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS----------  169 (308)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s----------  169 (308)
                        ....+...+..+.|+|++.. ++++.++.+++|++.++ +....+..|...+.+++|+|++++|+.+.          
T Consensus        80 --~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~  156 (360)
T d1k32a3          80 --KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG-KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY  156 (360)
T ss_dssp             --ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred             --EeeCCCceEEeeeecccccccceecccccccccccccc-ceeeeeecccccccchhhccceeeeeeeccccccceeec
Confidence              44567777999999999977 88999999999999998 77888888999999999999999998543          


Q ss_pred             CCCcEEEEeCCCCeEEEEEeCCCeeEE--EEcCCCEEEEEc-CCcEEEEEcCCCcee--------ee-------------
Q 021744          170 KDETVRVWDCASGQCAGVINLGGEVGC--MISEGPWIFIGV-TNFVKAWNTQTNTDL--------SL-------------  225 (308)
Q Consensus       170 ~dg~v~~wd~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~-d~~i~~wd~~~~~~~--------~~-------------  225 (308)
                      .++.+++||+.+++......+......  +++++++|+.++ ++.+.+||.......        .+             
T Consensus       157 ~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  236 (360)
T d1k32a3         157 VMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV  236 (360)
T ss_dssp             CEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCC
T ss_pred             cccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceEC
Confidence            455799999999887766665555543  468999998765 888888986433110        00             


Q ss_pred             -----------------------eCCCCCEEEEEEeCC---------------EEEEEcCCCeEEEEEcCCCCcccccce
Q 021744          226 -----------------------SGPVGQVYAMAVGND---------------LLFAGTQDGAILAWKFNVTTNCFEPAA  267 (308)
Q Consensus       226 -----------------------~~~~~~v~~~~~~~~---------------~l~~g~~dg~i~iwd~~~~~~~~~~~~  267 (308)
                                             .........+...++               ++++++.++.|++||+.+++     +.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-----~~  311 (360)
T d1k32a3         237 PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK-----VT  311 (360)
T ss_dssp             CGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC-----EE
T ss_pred             CCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe-----EE
Confidence                                   001112233333332               45566678899999998852     22


Q ss_pred             eccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          268 SLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       268 ~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                         .|...+.. +|||||++|++.. +..|+++.
T Consensus       312 ---~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d  342 (360)
T d1k32a3         312 ---EVKNNLTDLRLSADRKTVMVRKDDGKIYTFP  342 (360)
T ss_dssp             ---EEEEEEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             ---EecCCcCEEEECCCCCEEEEEECCCeEEEEE
Confidence               33455788 9999999998665 56666654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=3.3e-21  Score=158.08  Aligned_cols=250  Identities=10%  Similarity=0.075  Sum_probs=181.0

Q ss_pred             eEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccc
Q 021744           29 STADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNR  105 (308)
Q Consensus        29 ~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~  105 (308)
                      +++++.|++|++||..+++     .+ .+.+.     + ... .++|+|||++  ++++.+++|++||+.+++.+...  
T Consensus         5 yV~~~~~~~v~v~D~~t~~-----~~-~~i~~-----g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~--   70 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNK-----VT-ATIPV-----G-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV--   70 (301)
T ss_dssp             EEEETTTTEEEEEETTTTE-----EE-EEEEC-----S-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE--
T ss_pred             EEEECCCCEEEEEECCCCe-----EE-EEEEC-----C-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeee--
Confidence            5678899999999998871     11 11111     1 112 6999999997  67788999999999887654321  


Q ss_pred             eeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEE-EEeeCCCcEEEEeCCCC
Q 021744          106 AVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKL-YSGSKDETVRVWDCASG  182 (308)
Q Consensus       106 ~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~v~~wd~~~~  182 (308)
                      .....+..+.+++++..  +++..++.+.+|+..++ +....+.. ...+.+++++|++..+ +++..++.+.+|+..+.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~  148 (301)
T d1l0qa2          71 PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN-TVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK  148 (301)
T ss_dssp             ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             eccccccccccccccccccccccccceeeecccccc-eeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeecccc
Confidence            12223667888898865  56678899999999998 67777764 4567889999999876 56667889999999999


Q ss_pred             eEEEEEeCCCeeEEE--EcCCCEEEEEc--CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEE---cCCCeEEE
Q 021744          183 QCAGVINLGGEVGCM--ISEGPWIFIGV--TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAG---TQDGAILA  253 (308)
Q Consensus       183 ~~~~~~~~~~~v~~~--~~~~~~l~~~~--d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g---~~dg~i~i  253 (308)
                      +.+..+........+  .++++.++++.  .+.+.+|+....+..........+..++++++  .++.+   ..++.|++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v  228 (301)
T d1l0qa2         149 AVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSM  228 (301)
T ss_dssp             EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEE
T ss_pred             ceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeee
Confidence            999988855544443  57778777554  56788888888777754445567788999988  43332   34578999


Q ss_pred             EEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee--ceEEEEee
Q 021744          254 WKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV--SFIMFIGQ  299 (308)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~--s~~i~~~~  299 (308)
                      ||+.++    +.+..+..+. .+.. +|+|||++|++++  +..|.++.
T Consensus       229 ~D~~t~----~~~~~~~~~~-~~~~va~spdg~~l~va~~~~~~i~v~D  272 (301)
T d1l0qa2         229 IDTGTN----KITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVID  272 (301)
T ss_dssp             EETTTT----EEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eecCCC----eEEEEEcCCC-CEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            999987    6666666544 4566 9999999886444  55555554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=3.9e-22  Score=172.79  Aligned_cols=251  Identities=7%  Similarity=-0.063  Sum_probs=154.8

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCcccc-
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNIN-  103 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~-  103 (308)
                      .++++.+.|++|++||..++           +... .+..|... .++|||||++ ++++.|++|++||+++++..... 
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~-----------~~~~-~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~  100 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSK-----------KIVK-VIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE  100 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTC-----------SEEE-EEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCC-----------cEEE-EEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEE
Confidence            45788999999999999987           2221 12233334 7999999999 99999999999999888754221 


Q ss_pred             ---cceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCE-EEEeeCCC-----
Q 021744          104 ---NRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDK-LYSGSKDE-----  172 (308)
Q Consensus       104 ---~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s~dg-----  172 (308)
                         ...+...+....|+|+|..  +++..++.+++||..++ +.+..+.+|...+....+.+++.. .+..+.|+     
T Consensus       101 i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~  179 (426)
T d1hzua2         101 IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV  179 (426)
T ss_dssp             EECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred             EeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc-ceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEE
Confidence               1345555778889999976  55568999999999988 666666665544433333333321 22223333     


Q ss_pred             ------cEEEEeCCCCeE--EEEEeCCCeeEEE--EcCCCEEEEEc----------------------------------
Q 021744          173 ------TVRVWDCASGQC--AGVINLGGEVGCM--ISEGPWIFIGV----------------------------------  208 (308)
Q Consensus       173 ------~v~~wd~~~~~~--~~~~~~~~~v~~~--~~~~~~l~~~~----------------------------------  208 (308)
                            .+.+++......  +..+........+  .+++++++++.                                  
T Consensus       180 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (426)
T d1hzua2         180 NVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF  259 (426)
T ss_dssp             EETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEE
T ss_pred             ecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeee
Confidence                  333333332221  1111222222211  23444433322                                  


Q ss_pred             ---------------CCcEEEEEcCCC-------cee-eeeCCCCCEEEEEEeCC--EEEE-------EcCCCeEEEEEc
Q 021744          209 ---------------TNFVKAWNTQTN-------TDL-SLSGPVGQVYAMAVGND--LLFA-------GTQDGAILAWKF  256 (308)
Q Consensus       209 ---------------d~~i~~wd~~~~-------~~~-~~~~~~~~v~~~~~~~~--~l~~-------g~~dg~i~iwd~  256 (308)
                                     ++.+.+|+....       +.. .+.+|...+..++|+|+  +|++       ++.|++|++||+
T Consensus       260 ~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~  339 (426)
T d1hzua2         260 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL  339 (426)
T ss_dssp             EETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEET
T ss_pred             ecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEEC
Confidence                           344444444332       222 56778888999999999  7773       556889999999


Q ss_pred             CCCCcccccc-----eeccccCCCeEE-EEecCCCeEEEe
Q 021744          257 NVTTNCFEPA-----ASLKVHTDSNRA-HFSRDVTSLLGS  290 (308)
Q Consensus       257 ~~~~~~~~~~-----~~~~~~~~~v~~-~~s~d~~~l~~s  290 (308)
                      .+++...+.+     ..+..|...+.. +|||||++++.|
T Consensus       340 ~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs  379 (426)
T d1hzua2         340 KNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS  379 (426)
T ss_dssp             TCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEE
T ss_pred             CCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEE
Confidence            9873211111     112345667888 999999988654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=1.3e-20  Score=156.68  Aligned_cols=227  Identities=13%  Similarity=0.097  Sum_probs=160.8

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe--eeccCCCcEEEEECCCCCCccccc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINN  104 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~  104 (308)
                      .++++++.|++|++||..++.     .+. ..+  .+..+.....++|+|||++  ++++.+++|.+||+.+++.+....
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~-----~~~-~i~--~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~   73 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMA-----VDK-VIT--IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID   73 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTE-----EEE-EEE--CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCe-----EEE-EEE--CCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence            368999999999999998861     111 111  1112222227999999998  677889999999999887553221


Q ss_pred             ----ceeeeeeeeeeeecCCceE-Eee------------CCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEE
Q 021744          105 ----RAVIKTDILCRNWVQGNCM-YGE------------KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYS  167 (308)
Q Consensus       105 ----~~~~~~~~~~~~~~~~~~~-~g~------------~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  167 (308)
                          ..+......+.++|++..+ .+.            .+..+.+||..++ +....+.. ...+..++|+|+++++++
T Consensus        74 ~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~  151 (337)
T d1pbyb_          74 LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL-SRRKAFEA-PRQITMLAWARDGSKLYG  151 (337)
T ss_dssp             CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT-EEEEEEEC-CSSCCCEEECTTSSCEEE
T ss_pred             cCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC-eEEEeccc-cCCceEEEEcCCCCEEEE
Confidence                1122335678889988663 222            4678999999998 67777764 466889999999999998


Q ss_pred             eeCCCcEEEEeCCCCeEEEEEeCCC-------------------------------------------------------
Q 021744          168 GSKDETVRVWDCASGQCAGVINLGG-------------------------------------------------------  192 (308)
Q Consensus       168 ~s~dg~v~~wd~~~~~~~~~~~~~~-------------------------------------------------------  192 (308)
                      ++.+  +.+||..+++....+....                                                       
T Consensus       152 ~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (337)
T d1pbyb_         152 LGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG  229 (337)
T ss_dssp             ESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred             EcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCC
Confidence            8654  7789998887766653100                                                       


Q ss_pred             eeE------------EE--EcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEc
Q 021744          193 EVG------------CM--ISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF  256 (308)
Q Consensus       193 ~v~------------~~--~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~  256 (308)
                      .+.            ..  .+++.+++ +.++.|++||+.+++......+...+.+++|+||  +|++++.|+.|++||.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~  308 (337)
T d1pbyb_         230 EMAMREVRIMDVFYFSTAVNPAKTRAF-GAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             CEEEEEEEECSSCEEEEEECTTSSEEE-EEESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             cEEEEEecCCCcceEEEEecccceEEE-EccccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            000            00  12233333 3367899999999998854456778899999999  8999999999999999


Q ss_pred             CCCCcccccceecc
Q 021744          257 NVTTNCFEPAASLK  270 (308)
Q Consensus       257 ~~~~~~~~~~~~~~  270 (308)
                      .+.    +.+.++.
T Consensus       309 ~t~----~~v~~i~  318 (337)
T d1pbyb_         309 ETL----EKKGQVD  318 (337)
T ss_dssp             TTC----CEEEEEE
T ss_pred             CCC----cEEEEEE
Confidence            987    6666655

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=7.8e-20  Score=158.40  Aligned_cols=182  Identities=5%  Similarity=-0.137  Sum_probs=133.8

Q ss_pred             CceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe-eeccCCCcEEEEECCCCCCccccc
Q 021744           27 GLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN  104 (308)
Q Consensus        27 ~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~  104 (308)
                      .++++.+.|++|++||..++           +.... +..+... .++|||||++ ++++.|++|++||+.+++......
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~-----------~v~~~-~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~  100 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTY-----------EIKTV-LDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE  100 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTC-----------CEEEE-EECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCC-----------cEEEE-EeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEE
Confidence            44699999999999999987           22222 2222233 7999999999 999999999999998776432211


Q ss_pred             ----ceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCc-----------ccceEEEEEeCCCCEE-E
Q 021744          105 ----RAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGH-----------QKVVSGITLPSGSDKL-Y  166 (308)
Q Consensus       105 ----~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h-----------~~~v~~~~~~~~~~~l-~  166 (308)
                          ..+...+....|+|+|..  +++..++.|++||..++ +.+..+..|           ......+.++|++..+ +
T Consensus       101 i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~v  179 (432)
T d1qksa2         101 IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL-EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV  179 (432)
T ss_dssp             EECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC-CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred             EecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccc-cceeeeccCCccccceeccCCCceeEEEECCCCCEEEE
Confidence                234455677788999975  67888999999999998 677666544           3455678889988765 6


Q ss_pred             EeeCCCcEEEEeCCCCeEEE--EEeCCCeeEE--EEcCCCEEEEEc--CCcEEEEEcCCCc
Q 021744          167 SGSKDETVRVWDCASGQCAG--VINLGGEVGC--MISEGPWIFIGV--TNFVKAWNTQTNT  221 (308)
Q Consensus       167 s~s~dg~v~~wd~~~~~~~~--~~~~~~~v~~--~~~~~~~l~~~~--d~~i~~wd~~~~~  221 (308)
                      +...++.|.+||..+.+...  .+........  +.+++++++++.  ++.+.++|..+++
T Consensus       180 s~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~  240 (432)
T d1qksa2         180 NVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK  240 (432)
T ss_dssp             EETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             EEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccce
Confidence            77778999999999876544  4445444443  468899887655  6689999987654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.85  E-value=1.2e-20  Score=158.56  Aligned_cols=183  Identities=10%  Similarity=0.001  Sum_probs=149.1

Q ss_pred             eeEEec-CCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCC--CeEEEEEcCCCceeeeE
Q 021744           71 AKRFAN-NTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKC--KFLHSWTVGDGFKLLTQ  145 (308)
Q Consensus        71 ~i~~s~-~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d--~~i~iwd~~~~~~~~~~  145 (308)
                      .-.||| ||++ |+++ ++.|++||++.++...   ..|...+..+.|+|+|.. ++++.+  ..|++||..++.  ...
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~---~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~--~~~   80 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK---VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK--AEK   80 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE---CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC--EEE
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEE---ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc--EEE
Confidence            358999 9999 6655 5789999998775542   357777999999999966 444433  479999999873  456


Q ss_pred             eeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-CCCeeE--EEEcCCCEEEEEc-----------CCc
Q 021744          146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVG--CMISEGPWIFIGV-----------TNF  211 (308)
Q Consensus       146 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-~~~~v~--~~~~~~~~l~~~~-----------d~~  211 (308)
                      +..|...|.+++|+|++++|++++.++.+++|++.+++....+. +...+.  ++.+++++|+.+.           ++.
T Consensus        81 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~  160 (360)
T d1k32a3          81 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA  160 (360)
T ss_dssp             CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred             eeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccc
Confidence            77899999999999999999999999999999999999888877 444443  4468899988532           346


Q ss_pred             EEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744          212 VKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       212 i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~  259 (308)
                      +++||+.+++...+..+...+..++|+|+  .|++++.++.+.+|+....
T Consensus       161 ~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         161 IHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             EEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             eeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEccccccc
Confidence            89999999988877778888999999999  8999999999999987653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.84  E-value=2e-18  Score=141.18  Aligned_cols=225  Identities=12%  Similarity=0.045  Sum_probs=166.1

Q ss_pred             CCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc-eeEEecCCCe--eeccCCCcEEEEECCCCCCccc
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA-AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~  102 (308)
                      ..++++++.++.|++||..++.           . ......+... .+++++++..  +++..++.+.+|+..+++..  
T Consensus        44 ~~l~v~~~~~~~i~v~d~~t~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  109 (301)
T d1l0qa2          44 TKVYVANAHSNDVSIIDTATNN-----------V-IATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA--  109 (301)
T ss_dssp             SEEEEEEGGGTEEEEEETTTTE-----------E-EEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--
T ss_pred             CEEEEEECCCCEEEEEECCCCc-----------e-eeeeeccccccccccccccccccccccccceeeecccccceee--
Confidence            3355788899999999998761           1 1112233334 7899999997  67778889999999877544  


Q ss_pred             ccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCC-CcEEEEeC
Q 021744          103 NNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD-ETVRVWDC  179 (308)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-g~v~~wd~  179 (308)
                      ....+......+.+++++..  +++..++.+.+|+..+. +.+..+.. ...+..++++|++..+++++.+ +.+.+|+.
T Consensus       110 ~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (301)
T d1l0qa2         110 GTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-AVINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDT  187 (301)
T ss_dssp             EEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             eeccccccceEEEeecCCCeeeeeeccccceeeeecccc-ceeeeccc-CCCceEEEeeccccceeeecccccccccccc
Confidence            22223334677889999965  56677899999999998 67777764 4567899999999888777655 67778888


Q ss_pred             CCCeEEEEEeCCCeeEE--EEcCCCEEEEEc----CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--E-EEEEcCCCe
Q 021744          180 ASGQCAGVINLGGEVGC--MISEGPWIFIGV----TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--L-LFAGTQDGA  250 (308)
Q Consensus       180 ~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~----d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~-l~~g~~dg~  250 (308)
                      ...+....+........  +.+++..++++.    ++.|++||+.+++......+...+.+++|+||  + +++++.|+.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~  267 (301)
T d1l0qa2         188 VTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNT  267 (301)
T ss_dssp             TTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTE
T ss_pred             cceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCe
Confidence            88888887775555443  357788776432    46899999999988733333456899999999  4 468888999


Q ss_pred             EEEEEcCCCCcccccceecc
Q 021744          251 ILAWKFNVTTNCFEPAASLK  270 (308)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~  270 (308)
                      |++||+.++    +.+.++.
T Consensus       268 i~v~D~~t~----~~~~~~~  283 (301)
T d1l0qa2         268 VSVIDTATN----TITATMA  283 (301)
T ss_dssp             EEEEETTTT----EEEEEEE
T ss_pred             EEEEECCCC----eEEEEEe
Confidence            999999987    6666664

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.81  E-value=2.1e-18  Score=143.69  Aligned_cols=234  Identities=12%  Similarity=0.054  Sum_probs=154.8

Q ss_pred             CCCCCCceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCcccc-ccc-eeEEecCCCe--eeccCCCcEEEEECCCC
Q 021744           22 DGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATAN-GAA-AKRFANNTWG--RNNNFNNHSNNYRAGNS   97 (308)
Q Consensus        22 ~~~~~~~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh-~~~-~i~~s~~g~~--~s~~~d~~i~vwd~~~~   97 (308)
                      .+.++.++++++.|++|.+||..++           .........| ... .++|+|||++  +++..++.|++||+.++
T Consensus         4 ~~~~~~~l~~~~~~~~v~v~D~~t~-----------~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~   72 (346)
T d1jmxb_           4 LKAGHEYMIVTNYPNNLHVVDVASD-----------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC   72 (346)
T ss_dssp             CCTTCEEEEEEETTTEEEEEETTTT-----------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCCCCcEEEEEcCCCEEEEEECCCC-----------CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccC
Confidence            3566889999999999999999887           1111100111 122 7999999998  67778999999999888


Q ss_pred             CCccccc-----ceeeeeeeeeeeecCCceE-E------------eeCCCeEEEEEcCCCceeeeEeeCc--ccceEEEE
Q 021744           98 KNSNINN-----RAVIKTDILCRNWVQGNCM-Y------------GEKCKFLHSWTVGDGFKLLTQLEGH--QKVVSGIT  157 (308)
Q Consensus        98 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~------------g~~d~~i~iwd~~~~~~~~~~~~~h--~~~v~~~~  157 (308)
                      +......     ..+...+..+.++++|..+ .            ...+..+.+|+..++ +....+..+  ...+..+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~  151 (346)
T d1jmxb_          73 KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG-LEAKPVRTFPMPRQVYLMR  151 (346)
T ss_dssp             EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG-GGBCCSEEEECCSSCCCEE
T ss_pred             eeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccc-eeeeEEEeeeccCceEEEE
Confidence            6543221     2223346678899999662 2            235788999998876 333333222  23445555


Q ss_pred             EeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC-----------------------------------------------
Q 021744          158 LPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-----------------------------------------------  190 (308)
Q Consensus       158 ~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~-----------------------------------------------  190 (308)
                      +++++..++++   ..+.+|++.+++.+..+..                                               
T Consensus       152 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (346)
T d1jmxb_         152 AADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL  228 (346)
T ss_dssp             ECTTSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred             ecCCCEEEEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccC
Confidence            66666555442   3466777666655554421                                               


Q ss_pred             ----------------------CCeeEEE--EcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEE
Q 021744          191 ----------------------GGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFA  244 (308)
Q Consensus       191 ----------------------~~~v~~~--~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~  244 (308)
                                            ...+...  .+++.+++...++.|.+||+.+++......+...+.+++|+||  +|++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v  308 (346)
T d1jmxb_         229 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYL  308 (346)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEE
T ss_pred             CceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEE
Confidence                                  1111111  2344555555567899999999988844445567899999999  8899


Q ss_pred             EcCCCeEEEEEcCCCCcccccceeccccCC
Q 021744          245 GTQDGAILAWKFNVTTNCFEPAASLKVHTD  274 (308)
Q Consensus       245 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  274 (308)
                      ++.|+.|++||..+.    +.+.++..+.+
T Consensus       309 ~~~d~~v~v~D~~t~----~~i~~i~~p~g  334 (346)
T d1jmxb_         309 GGTFNDLAVFNPDTL----EKVKNIKLPGG  334 (346)
T ss_dssp             ESBSSEEEEEETTTT----EEEEEEECSSS
T ss_pred             EeCCCcEEEEECccC----CEEEEEECCCC
Confidence            999999999999997    77777764443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=5.6e-17  Score=134.38  Aligned_cols=216  Identities=10%  Similarity=0.004  Sum_probs=151.5

Q ss_pred             e-eeccCCCcEEEEECCCCCCcccccce-eeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCcc-----
Q 021744           80 G-RNNNFNNHSNNYRAGNSKNSNINNRA-VIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQ-----  150 (308)
Q Consensus        80 ~-~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h~-----  150 (308)
                      + ++++.|++|+|||+++++.+...... +...+..+.++|+|+.  ++++.++.|.+||+.++ +.+..+..+.     
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~-~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-ETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-CEEEEEECCBTTEEE
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC-cEEEEEecCCCcccc
Confidence            5 89999999999999888655432221 2234678899999976  56778999999999999 6777776543     


Q ss_pred             cceEEEEEeCCCCEEEEee------------CCCcEEEEeCCCCeEEEEEeCCCeeE--EEEcCCCEEEEEcCCcEEEEE
Q 021744          151 KVVSGITLPSGSDKLYSGS------------KDETVRVWDCASGQCAGVINLGGEVG--CMISEGPWIFIGVTNFVKAWN  216 (308)
Q Consensus       151 ~~v~~~~~~~~~~~l~s~s------------~dg~v~~wd~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~d~~i~~wd  216 (308)
                      ..+..++|+|++++++++.            .+..+.+||..+++.+..+.....+.  .+.++++++++++ +.+.+||
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~~d  160 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG-RDLHVMD  160 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES-SSEEEEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc-CCcceee
Confidence            3456889999999988776            46789999999999999888555443  3467888887764 3466777


Q ss_pred             cCCCcee-------------------------------------------------------------------eeeCCC
Q 021744          217 TQTNTDL-------------------------------------------------------------------SLSGPV  229 (308)
Q Consensus       217 ~~~~~~~-------------------------------------------------------------------~~~~~~  229 (308)
                      ..+++..                                                                   .+..+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (337)
T d1pbyb_         161 PEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD  240 (337)
T ss_dssp             TTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECS
T ss_pred             eecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCC
Confidence            6654211                                                                   111233


Q ss_pred             CCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ce--EEEEeecCce
Q 021744          230 GQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SF--IMFIGQNNKG  303 (308)
Q Consensus       230 ~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~--~i~~~~~~~~  303 (308)
                      ..+..+.++|+  +++.+  ++.|++||+.++    +.+..+. +...+.+ +|+|||++|+++. +.  .+|-..+.+.
T Consensus       241 ~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~----~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~  313 (337)
T d1pbyb_         241 VFYFSTAVNPAKTRAFGA--YNVLESFDLEKN----ASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             SCEEEEEECTTSSEEEEE--ESEEEEEETTTT----EEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred             cceEEEEecccceEEEEc--cccEEEEECCCC----cEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE
Confidence            34555666666  44433  589999999997    6666664 4556667 9999999988655 44  4444444444


Q ss_pred             e
Q 021744          304 V  304 (308)
Q Consensus       304 ~  304 (308)
                      +
T Consensus       314 v  314 (337)
T d1pbyb_         314 K  314 (337)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=7.2e-16  Score=127.63  Aligned_cols=261  Identities=8%  Similarity=0.060  Sum_probs=164.4

Q ss_pred             ceEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe--eeccCCCcEEEEECCCCCCcccc
Q 021744           28 LSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNIN  103 (308)
Q Consensus        28 ~~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~  103 (308)
                      .+++++.|++|++|+.+....   ..+.       ....|.+.  .++|+|||++  +++..|+.|++|++.........
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~---l~~~-------~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~   75 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGA---LTLT-------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF   75 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSC---EEEE-------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EEEECCCCCcEEEEEEcCCCC---eEEE-------EEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEE
Confidence            578899999999999865310   0000       00122222  6999999998  56667899999999765433222


Q ss_pred             c--ceeeeeeeeeeeecCCce-EEee-CCCeEEEEEcCCCc-eeeeEeeCcccceEEEEEeCCCCEEEEeeC-CCcEEEE
Q 021744          104 N--RAVIKTDILCRNWVQGNC-MYGE-KCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVW  177 (308)
Q Consensus       104 ~--~~~~~~~~~~~~~~~~~~-~~g~-~d~~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~v~~w  177 (308)
                      .  ......+..+.++|+|+. ++++ .++.|.+|+..... ........+...+.++.++|++++++.++. +..+.+|
T Consensus        76 ~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~  155 (333)
T d1ri6a_          76 AAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLF  155 (333)
T ss_dssp             EEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEE
T ss_pred             eeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEE
Confidence            1  122233667899999976 4444 57889999887662 222334456778889999999998877764 4579999


Q ss_pred             eCCCCeEEEEEe-------CCCeeE--EEEcCCCEEEEE-c-CCcEEEEEcCCCcee-----eee------CCCCCEEEE
Q 021744          178 DCASGQCAGVIN-------LGGEVG--CMISEGPWIFIG-V-TNFVKAWNTQTNTDL-----SLS------GPVGQVYAM  235 (308)
Q Consensus       178 d~~~~~~~~~~~-------~~~~v~--~~~~~~~~l~~~-~-d~~i~~wd~~~~~~~-----~~~------~~~~~v~~~  235 (308)
                      +...........       ......  .+.+++.+++.. . .+...+|+.......     ...      ........+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (333)
T d1ri6a_         156 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI  235 (333)
T ss_dssp             EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred             EeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeE
Confidence            987653332211       222223  234667776644 3 567788876543211     111      123456778


Q ss_pred             EEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee----ceEEEEee
Q 021744          236 AVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV----SFIMFIGQ  299 (308)
Q Consensus       236 ~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~----s~~i~~~~  299 (308)
                      +++++   .++.+..++.+.+|++...... ..+.........+.. +|+|||++|++++    .+.+|-..
T Consensus       236 ~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         236 HITPDGRHLYACDRTASLITVFSVSEDGSV-LSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSCC-EEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             EEecccCceeeecccCCeEEEEEEcCCCCE-EEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            89988   6667778899999999865321 111222233444555 9999999988765    35566444

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.74  E-value=1.8e-16  Score=136.67  Aligned_cols=207  Identities=10%  Similarity=-0.032  Sum_probs=140.6

Q ss_pred             eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCce-eeeE---eeCcccceEE
Q 021744           81 RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFK-LLTQ---LEGHQKVVSG  155 (308)
Q Consensus        81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~-~~~~---~~~h~~~v~~  155 (308)
                      ++++.|++|+|||+.+++.+.....  ...+..+.|+|+|+. ++++.|+.|++||+.+++. ....   ..+|...+.+
T Consensus        36 V~~~~dg~v~vwD~~t~~~~~~l~~--g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s  113 (426)
T d1hzua2          36 VTLRDAGQIALVDGDSKKIVKVIDT--GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESS  113 (426)
T ss_dssp             EEETTTTEEEEEETTTCSEEEEEEC--CSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEEC
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEeC--CCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEe
Confidence            8899999999999999877643322  234788999999987 7788999999999998731 2222   2357777788


Q ss_pred             EEEeCCCCEE-EEeeCCCcEEEEeCCCCeEEEEEeCCC------------eeE--EEEcCCCEEEEEc--CCcEEEEEcC
Q 021744          156 ITLPSGSDKL-YSGSKDETVRVWDCASGQCAGVINLGG------------EVG--CMISEGPWIFIGV--TNFVKAWNTQ  218 (308)
Q Consensus       156 ~~~~~~~~~l-~s~s~dg~v~~wd~~~~~~~~~~~~~~------------~v~--~~~~~~~~l~~~~--d~~i~~wd~~  218 (308)
                      ++|+|||+++ +++..++++.+||..+++++..+....            ...  ...+++..++...  .+.+.+++..
T Consensus       114 ~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~  193 (426)
T d1hzua2         114 KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK  193 (426)
T ss_dssp             CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECS
T ss_pred             eeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEec
Confidence            8899999986 555689999999999998887765221            111  1134555555332  4456566555


Q ss_pred             CCcee--eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCc--------------------------------
Q 021744          219 TNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTN--------------------------------  261 (308)
Q Consensus       219 ~~~~~--~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~--------------------------------  261 (308)
                      .....  ....+...+..+.++|+   ++++...+..+.+++..+.+.                                
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (426)
T d1hzua2         194 DIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL  273 (426)
T ss_dssp             SSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECT
T ss_pred             cccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccC
Confidence            54322  33456667788888887   334444555566665543221                                


Q ss_pred             ------------------ccccceeccccCCCeEE-EEecCCCeEEE
Q 021744          262 ------------------CFEPAASLKVHTDSNRA-HFSRDVTSLLG  289 (308)
Q Consensus       262 ------------------~~~~~~~~~~~~~~v~~-~~s~d~~~l~~  289 (308)
                                        ..+....+.+|...+.. +|+||+++|++
T Consensus       274 ~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v  320 (426)
T d1hzua2         274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYV  320 (426)
T ss_dssp             TTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEE
T ss_pred             CCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEE
Confidence                              01334456678888888 99999999996

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.74  E-value=7.8e-17  Score=134.00  Aligned_cols=221  Identities=7%  Similarity=-0.040  Sum_probs=147.0

Q ss_pred             eEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744           72 KRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEG  148 (308)
Q Consensus        72 i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~  148 (308)
                      +++++++++ ++++.|++|.+||+++++.+......+...+..+.|+|+|..  +++..++.|++||+.++ +.+..+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~-~~~~~~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccC-eeeeeecc
Confidence            578999999 999999999999999887764443344455788999999975  56778999999999998 66666543


Q ss_pred             c------ccceEEEEEeCCCCEEEEee------------CCCcEEEEeCCCCeEEEEEe---CCCeeEE-EE-cCCCEEE
Q 021744          149 H------QKVVSGITLPSGSDKLYSGS------------KDETVRVWDCASGQCAGVIN---LGGEVGC-MI-SEGPWIF  205 (308)
Q Consensus       149 h------~~~v~~~~~~~~~~~l~s~s------------~dg~v~~wd~~~~~~~~~~~---~~~~v~~-~~-~~~~~l~  205 (308)
                      .      ...+..++|+||+++++.++            .+..+.+|+..+++....+.   .+..... .. .++++++
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV  160 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence            2      23467899999999887665            47788999887754332211   1111100 01 1111111


Q ss_pred             E----------------------------------------------------------------Ec-CCcEEEEEcCCC
Q 021744          206 I----------------------------------------------------------------GV-TNFVKAWNTQTN  220 (308)
Q Consensus       206 ~----------------------------------------------------------------~~-d~~i~~wd~~~~  220 (308)
                      .                                                                +. +..+.+||+.++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
T d1jmxb_         161 AGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG  240 (346)
T ss_dssp             ESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC
T ss_pred             eCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCC
Confidence            1                                                                00 223555666666


Q ss_pred             cee--eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceE
Q 021744          221 TDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFI  294 (308)
Q Consensus       221 ~~~--~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~  294 (308)
                      +..  ....+...+..+.++++  +++... ++.|.+||..++    +.+..+. +...+.. +|+|||++|++++ +..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~----~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~  314 (346)
T d1jmxb_         241 KTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR----KLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFND  314 (346)
T ss_dssp             CEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT----EEEEEEE-CSSCCCEEEECSSSSCEEEESBSSE
T ss_pred             ceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCC----cEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCc
Confidence            544  34456667788888877  444444 468999999987    5566554 3445667 9999999998655 444


Q ss_pred             EEEee
Q 021744          295 MFIGQ  299 (308)
Q Consensus       295 i~~~~  299 (308)
                      |.++.
T Consensus       315 v~v~D  319 (346)
T d1jmxb_         315 LAVFN  319 (346)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=1.6e-15  Score=130.96  Aligned_cols=164  Identities=13%  Similarity=0.054  Sum_probs=125.6

Q ss_pred             EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeE--EEEEeCCCeeEEE---
Q 021744          123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC--AGVINLGGEVGCM---  197 (308)
Q Consensus       123 ~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~--~~~~~~~~~v~~~---  197 (308)
                      ++.+.++.|.|||+.++ +.+..+..| ..+..++|+|||+++++++.|++|++||+.+++.  +..++.......+   
T Consensus        36 v~~~d~g~v~v~D~~t~-~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s  113 (432)
T d1qksa2          36 VTLRDAGQIALIDGSTY-EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS  113 (432)
T ss_dssp             EEETTTTEEEEEETTTC-CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred             EEEcCCCEEEEEECCCC-cEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence            77888999999999999 889999877 4689999999999999999999999999998763  4455533322221   


Q ss_pred             ---EcCCCEEE-EEc-CCcEEEEEcCCCcee-eeeC-----------CCCCEEEEEEeCC---EEEEEcCCCeEEEEEcC
Q 021744          198 ---ISEGPWIF-IGV-TNFVKAWNTQTNTDL-SLSG-----------PVGQVYAMAVGND---LLFAGTQDGAILAWKFN  257 (308)
Q Consensus       198 ---~~~~~~l~-~~~-d~~i~~wd~~~~~~~-~~~~-----------~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~  257 (308)
                         ++||++|+ ++. +++|++||..+++.+ .+..           +......+.++|+   ++++...++.|.+||..
T Consensus       114 ~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~  193 (432)
T d1qksa2         114 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT  193 (432)
T ss_dssp             CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred             cccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEcc
Confidence               36899875 454 899999999999876 3332           3456778899998   66778889999999998


Q ss_pred             CCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          258 VTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      +.+.  ..+..+ .+...+.. +|+|||++++++.
T Consensus       194 ~~~~--~~~~~i-~~g~~~~~~~~spdg~~~~va~  225 (432)
T d1qksa2         194 DLNN--LKTTEI-SAERFLHDGGLDGSHRYFITAA  225 (432)
T ss_dssp             CSSE--EEEEEE-ECCSSEEEEEECTTSCEEEEEE
T ss_pred             CCCc--ceEEEE-cccCccccceECCCCCEEEEec
Confidence            7632  222333 34556667 9999999888665

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=3.9e-15  Score=124.40  Aligned_cols=229  Identities=10%  Similarity=-0.011  Sum_probs=147.7

Q ss_pred             cCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eec----------cCCCcEEEEECCCCCCcc
Q 021744           33 TRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNN----------NFNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        33 s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~----------~~d~~i~vwd~~~~~~~~  101 (308)
                      +.+.++.+||..++           .+... ...+....++|+|||+. +.+          ..|+.|++||+.+++...
T Consensus        25 ~~~~~v~v~D~~tg-----------~~~~~-~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~   92 (355)
T d2bbkh_          25 AAVTQQFVIDGEAG-----------RVIGM-IDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA   92 (355)
T ss_dssp             CSSEEEEEEETTTT-----------EEEEE-EEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE
T ss_pred             CCcCeEEEEECCCC-----------cEEEE-EECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEE
Confidence            35678999999887           11111 11122226899999997 443          457899999998887543


Q ss_pred             cccc------eeeeeeeeeeeecCCce-EE--eeCCCeEEEEEcCCCceeeeEeeCc-----------------------
Q 021744          102 INNR------AVIKTDILCRNWVQGNC-MY--GEKCKFLHSWTVGDGFKLLTQLEGH-----------------------  149 (308)
Q Consensus       102 ~~~~------~~~~~~~~~~~~~~~~~-~~--g~~d~~i~iwd~~~~~~~~~~~~~h-----------------------  149 (308)
                      ....      ........+.|++++.. +.  .+.+..+.+|+..++ +.+..+..+                       
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~  171 (355)
T d2bbkh_          93 DIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK-AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLA  171 (355)
T ss_dssp             EEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT-EEEEEEECCSEEEEEEEETTEEEEEETTSCEE
T ss_pred             EEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCC-cEeeEEecCCcceEeecCCcceEEEcCCCCEE
Confidence            2211      11122455788999865 22  345678899998877 444333211                       


Q ss_pred             ----------------------ccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEE--EEe-------------CCC
Q 021744          150 ----------------------QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG--VIN-------------LGG  192 (308)
Q Consensus       150 ----------------------~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~--~~~-------------~~~  192 (308)
                                            ...+....+.+++..++.++.++.+++|++..++...  ...             ...
T Consensus       172 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  251 (355)
T d2bbkh_         172 KVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW  251 (355)
T ss_dssp             EEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSS
T ss_pred             EEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccce
Confidence                                  1112334556666677888889999999988765322  111             111


Q ss_pred             eeEEEEcCCCEEEEEc-----------CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC----EEEEEcCCCeEEEEEcC
Q 021744          193 EVGCMISEGPWIFIGV-----------TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFN  257 (308)
Q Consensus       193 ~v~~~~~~~~~l~~~~-----------d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~----~l~~g~~dg~i~iwd~~  257 (308)
                      ....+.+++..+++..           ...|.+||+.+++.+....+...+.+++|+||    +++++..|+.|++||+.
T Consensus       252 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~  331 (355)
T d2bbkh_         252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE  331 (355)
T ss_dssp             SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             EEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECC
Confidence            2234567888776532           13699999999988733234456889999998    45677889999999999


Q ss_pred             CCCcccccceeccccCCCeEE
Q 021744          258 VTTNCFEPAASLKVHTDSNRA  278 (308)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~  278 (308)
                      ++    +.+.++..+......
T Consensus       332 tg----~~~~~i~~~G~~p~~  348 (355)
T d2bbkh_         332 SG----EELRSVNQLGHGPQV  348 (355)
T ss_dssp             TC----CEEEEECCCCSSCCE
T ss_pred             CC----CEEEEEeCcCCCccE
Confidence            98    778888766554444

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.64  E-value=2.9e-13  Score=113.71  Aligned_cols=249  Identities=7%  Similarity=-0.106  Sum_probs=153.6

Q ss_pred             CCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eecc----------CCCcEEEEECCCCCCccc
Q 021744           34 RQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNNN----------FNNHSNNYRAGNSKNSNI  102 (308)
Q Consensus        34 ~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~~----------~d~~i~vwd~~~~~~~~~  102 (308)
                      .+..+.+||..++           ..... +.++....++|+|||++ ++++          .++.|++||..+++....
T Consensus        45 ~~~~v~v~D~~tg-----------~~~~~-~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~  112 (373)
T d2madh_          45 AIIQQWVLDAGSG-----------SILGH-VNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIAD  112 (373)
T ss_pred             CCceEEEEECCCC-----------CEEEE-EeCCCCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEE
Confidence            4467999998877           11111 11222225899999999 5553          467899999998875433


Q ss_pred             ccceee------eeeeeeeeecCCce---EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCE-EEEeeCCC
Q 021744          103 NNRAVI------KTDILCRNWVQGNC---MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDK-LYSGSKDE  172 (308)
Q Consensus       103 ~~~~~~------~~~~~~~~~~~~~~---~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s~dg  172 (308)
                      ......      .....+.+++++..   .....++.+.+|+..+. +...    +.....++.++|+++. +++.+.|+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~s~~g~~~~v~~~~dg  187 (373)
T d2madh_         113 IELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGS-SDDQ----LLSSPTCYHIHPGAPSTFYLLCAQG  187 (373)
T ss_pred             EecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCC-eEEE----EeccceeEEEecCCCcEEEEEcCCC
Confidence            211111      11345677888754   22345677888888776 3332    3445678899998865 47889999


Q ss_pred             cEEEEeCCCCeEEEEEeCC------Ce-eEEE--EcCCCEEEEEcCCcEEEEEcCCCcee---eeeCCC----------C
Q 021744          173 TVRVWDCASGQCAGVINLG------GE-VGCM--ISEGPWIFIGVTNFVKAWNTQTNTDL---SLSGPV----------G  230 (308)
Q Consensus       173 ~v~~wd~~~~~~~~~~~~~------~~-v~~~--~~~~~~l~~~~d~~i~~wd~~~~~~~---~~~~~~----------~  230 (308)
                      ++.+|+...++........      .. ....  ..++.+++.+.++.+.+|+..+.+..   ....+.          .
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (373)
T d2madh_         188 GLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPG  267 (373)
T ss_pred             eEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccC
Confidence            9999999988877665411      11 1112  23445555666889999998877543   111111          1


Q ss_pred             CEEEEEEeCC------------EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeE-EEee--ceE
Q 021744          231 QVYAMAVGND------------LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSL-LGSV--SFI  294 (308)
Q Consensus       231 ~v~~~~~~~~------------~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l-~~s~--s~~  294 (308)
                      ....++++++            .++....++.+.+||..++    +.+..+. +...+.. +|+|||+.+ +++.  +..
T Consensus       268 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~----~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~  342 (373)
T d2madh_         268 GWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG----QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEV  342 (373)
T ss_pred             cceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC----cEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCe
Confidence            2223344443            4455667788999999987    5566554 4456667 999999854 3333  444


Q ss_pred             EEE--eecCcee
Q 021744          295 MFI--GQNNKGV  304 (308)
Q Consensus       295 i~~--~~~~~~~  304 (308)
                      |++  ..+.+.+
T Consensus       343 v~v~D~~tg~~~  354 (373)
T d2madh_         343 LHIYDAGAGDQD  354 (373)
T ss_pred             EEEEECCCCCEE
Confidence            444  4455544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.64  E-value=3e-13  Score=113.65  Aligned_cols=233  Identities=9%  Similarity=-0.026  Sum_probs=149.6

Q ss_pred             cCCCeEEEeecCCCCCCCCCcccccCCCCC--Cccccccc-eeEEecCCCe-eec--cCCCcEEEEECCCCCCcccccce
Q 021744           33 TRQKVCNYWRAGKCNRFPCPYLHRELPLPP--AATANGAA-AKRFANNTWG-RNN--NFNNHSNNYRAGNSKNSNINNRA  106 (308)
Q Consensus        33 s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~--~~~gh~~~-~i~~s~~g~~-~s~--~~d~~i~vwd~~~~~~~~~~~~~  106 (308)
                      +.++.|++||..+++..      .+.+.+.  ........ .+.|+|+++. +..  ..++.+.+|+....+..     .
T Consensus        94 ~~~~~v~v~D~~t~~~~------~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~-----~  162 (373)
T d2madh_          94 KRTDYVEVFDPVTFLPI------ADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD-----Q  162 (373)
T ss_pred             ccceEEEEEECCCCcEE------EEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE-----E
Confidence            45688999999887211      0011111  00000111 5899999997 433  45678899998765332     2


Q ss_pred             eeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEeeCc------ccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 021744          107 VIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGH------QKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (308)
Q Consensus       107 ~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~l~s~s~dg~v~~wd  178 (308)
                      +......+.+++++..  ++.+.|+.+.+|+..+. +.......+      ......+.+.+++ .++..+.++.+.+|+
T Consensus       163 ~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~  240 (373)
T d2madh_         163 LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGG-AAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQAD  240 (373)
T ss_pred             EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCc-eeeEEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEEEE
Confidence            3333566778888854  77889999999999887 454444322      1223344555554 455667889999999


Q ss_pred             CCCCeEEEEEeC---------------CCeeEEEEcCCCE----------EEEE-cCCcEEEEEcCCCceeeeeCCCCCE
Q 021744          179 CASGQCAGVINL---------------GGEVGCMISEGPW----------IFIG-VTNFVKAWNTQTNTDLSLSGPVGQV  232 (308)
Q Consensus       179 ~~~~~~~~~~~~---------------~~~v~~~~~~~~~----------l~~~-~d~~i~~wd~~~~~~~~~~~~~~~v  232 (308)
                      ....+.......               ......+.+++..          ++.. .++.+.+||+.+++.+....+...+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~  320 (373)
T d2madh_         241 ISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDV  320 (373)
T ss_pred             cCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCe
Confidence            887654332220               0011122233333          3333 3678999999999988655677789


Q ss_pred             EEEEEeCC----EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEec
Q 021744          233 YAMAVGND----LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSR  282 (308)
Q Consensus       233 ~~~~~~~~----~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~  282 (308)
                      ..++|+||    ++++++.|+.|++||+.++    +.+.++..+....+. ++.+
T Consensus       321 ~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg----~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         321 DAISVAQDGGPDLYALSAGTEVLHIYDAGAG----DQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             eEEEECCCCCEEEEEEeCCCCeEEEEECCCC----CEEEEECCCCCCCcEEEEec
Confidence            99999998    3568899999999999998    778888877665555 5544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=2.8e-12  Score=105.52  Aligned_cols=221  Identities=9%  Similarity=0.027  Sum_probs=145.6

Q ss_pred             eeccCCCcEEEEECCCCCCccc-ccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCceeeeEe---eCcccceE
Q 021744           81 RNNNFNNHSNNYRAGNSKNSNI-NNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQL---EGHQKVVS  154 (308)
Q Consensus        81 ~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~~~~~~---~~h~~~v~  154 (308)
                      ++++.|++|++|+++....+.. ....+...+..++|+|+|+.  +++..|+.|++|++.... ...++   ..+...+.
T Consensus         8 v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~-~~~~~~~~~~~~~~p~   86 (333)
T d1ri6a_           8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD-GALTFAAESALPGSLT   86 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT-CCEEEEEEEECSSCCS
T ss_pred             EECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCC-CcEEEeeecccCCCce
Confidence            7888999999999975432211 22345566889999999976  445568999999997652 22222   22445678


Q ss_pred             EEEEeCCCCEEEEeeC-CCcEEEEeCCCCeEEEEEe---CCCeeE--EEEcCCCEEEEEc--CCcEEEEEcCCCcee---
Q 021744          155 GITLPSGSDKLYSGSK-DETVRVWDCASGQCAGVIN---LGGEVG--CMISEGPWIFIGV--TNFVKAWNTQTNTDL---  223 (308)
Q Consensus       155 ~~~~~~~~~~l~s~s~-dg~v~~wd~~~~~~~~~~~---~~~~v~--~~~~~~~~l~~~~--d~~i~~wd~~~~~~~---  223 (308)
                      .++|+||+++|++++. ++.|.+|+...........   +...+.  .+.+++++++.+.  +..|.+|+.......   
T Consensus        87 ~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~  166 (333)
T d1ri6a_          87 HISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQ  166 (333)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred             EEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceee
Confidence            8999999999988875 6789999988766554443   332332  3468888888665  668999998775432   


Q ss_pred             ----eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceecc------ccCCCeEE-EEecCCCeEEE
Q 021744          224 ----SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLK------VHTDSNRA-HFSRDVTSLLG  289 (308)
Q Consensus       224 ----~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~v~~-~~s~d~~~l~~  289 (308)
                          ...........++|+++   .+.+....+...+|++............+.      ........ ++++|++++++
T Consensus       167 ~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~  246 (333)
T d1ri6a_         167 DPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYA  246 (333)
T ss_dssp             EEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEE
T ss_pred             eceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceee
Confidence                11233456788999998   455666778889998765432112222221      12234455 89999998876


Q ss_pred             ee----ceEEEEeecCc
Q 021744          290 SV----SFIMFIGQNNK  302 (308)
Q Consensus       290 s~----s~~i~~~~~~~  302 (308)
                      ..    ...+|....+.
T Consensus       247 ~~~~~~~~~~~~~~~~~  263 (333)
T d1ri6a_         247 CDRTASLITVFSVSEDG  263 (333)
T ss_dssp             EETTTTEEEEEEECTTS
T ss_pred             ecccCCeEEEEEEcCCC
Confidence            54    44555554443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.47  E-value=6.1e-13  Score=112.89  Aligned_cols=264  Identities=8%  Similarity=-0.064  Sum_probs=163.1

Q ss_pred             CCceEEecCCCeEEEeecCCCCC-CCCCcccccC-----------------CCCCCccccccc--eeEEecCCCe--eec
Q 021744           26 GGLSTADTRQKVCNYWRAGKCNR-FPCPYLHREL-----------------PLPPAATANGAA--AKRFANNTWG--RNN   83 (308)
Q Consensus        26 ~~~~~s~s~d~~i~~W~~~~~~~-~~~~~~~~~~-----------------~~~~~~~gh~~~--~i~~s~~g~~--~s~   83 (308)
                      .=.++|++.+|+|++|+..++.. ..-+.+..+.                 ........|...  ...++|||++  ++.
T Consensus        11 ~y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d   90 (441)
T d1qnia2          11 YYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFIND   90 (441)
T ss_dssp             EEEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEc
Confidence            34588899999999999876521 0111111100                 001111223333  3445799998  666


Q ss_pred             cCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCC------------------eEEEEEcCCCceee
Q 021744           84 NFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCK------------------FLHSWTVGDGFKLL  143 (308)
Q Consensus        84 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~------------------~i~iwd~~~~~~~~  143 (308)
                      ..+++|.++|+.+.+...............+.|+++++.  +....+.                  .+..+|..+. +..
T Consensus        91 ~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~-~v~  169 (441)
T d1qnia2          91 KANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM-DVA  169 (441)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC-SEE
T ss_pred             CCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc-eee
Confidence            788999999999886554333334455778899998864  4333222                  2355777777 555


Q ss_pred             eEeeCcccceEEEEEeCCCCEEEEeeCC-----------------------------------------CcEEEEeCCCC
Q 021744          144 TQLEGHQKVVSGITLPSGSDKLYSGSKD-----------------------------------------ETVRVWDCASG  182 (308)
Q Consensus       144 ~~~~~h~~~v~~~~~~~~~~~l~s~s~d-----------------------------------------g~v~~wd~~~~  182 (308)
                      .++.. .+....++++|+++++++.+.+                                         +.+.+++....
T Consensus       170 ~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~  248 (441)
T d1qnia2         170 WQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGES  248 (441)
T ss_dssp             EEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSC
T ss_pred             EEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCC
Confidence            55543 2457889999999998777643                                         34455555555


Q ss_pred             eEEEEEeCC-Cee-EEEEcCCCEEEEEc--CCcEEEEEcCCCcee---------eeeCCC---CCEEEEEEeCC--EEEE
Q 021744          183 QCAGVINLG-GEV-GCMISEGPWIFIGV--TNFVKAWNTQTNTDL---------SLSGPV---GQVYAMAVGND--LLFA  244 (308)
Q Consensus       183 ~~~~~~~~~-~~v-~~~~~~~~~l~~~~--d~~i~~wd~~~~~~~---------~~~~~~---~~v~~~~~~~~--~l~~  244 (308)
                      +.+..+..+ .+. ..++|+|++++++.  +++|.+||+.+.+..         .+.++.   -.....+|.++  .+.+
T Consensus       249 ~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts  328 (441)
T d1qnia2         249 EFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTT  328 (441)
T ss_dssp             SSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEE
T ss_pred             ceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEc
Confidence            556666522 222 34579999988654  899999998764321         111111   12345678888  6677


Q ss_pred             EcCCCeEEEEEcCCC------Ccccccceec-----cccCCCeEE-EEecCCCeEEEee
Q 021744          245 GTQDGAILAWKFNVT------TNCFEPAASL-----KVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       245 g~~dg~i~iwd~~~~------~~~~~~~~~~-----~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      ...|..|..|++...      ......+..+     .+|...+.. +|+|||+||++.+
T Consensus       329 ~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         329 LFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             ETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             ccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            788999999997421      0001122222     478777888 9999999999775

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.44  E-value=3e-12  Score=106.50  Aligned_cols=223  Identities=9%  Similarity=-0.018  Sum_probs=139.5

Q ss_pred             EEecCCCe-ee-----ccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceE-E----------eeCCCeEEEEE
Q 021744           73 RFANNTWG-RN-----NNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCM-Y----------GEKCKFLHSWT  135 (308)
Q Consensus        73 ~~s~~g~~-~s-----~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------g~~d~~i~iwd  135 (308)
                      +.+||++. +.     +..+.+|.+||..+++.+...   .......++|+|+|+.+ .          +..|+.|++||
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~---~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI---DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE---EECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEE---ECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            45788887 33     245678999999988765422   12233467899999652 2          34588999999


Q ss_pred             cCCCceeeeEeeCcc-------cceEEEEEeCCCCEEEEee--CCCcEEEEeCCCCeEEEEEeCCCeeE----------E
Q 021744          136 VGDGFKLLTQLEGHQ-------KVVSGITLPSGSDKLYSGS--KDETVRVWDCASGQCAGVINLGGEVG----------C  196 (308)
Q Consensus       136 ~~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~l~s~s--~dg~v~~wd~~~~~~~~~~~~~~~v~----------~  196 (308)
                      +.++ +.+..+..+.       .....++|+|++++++.++  .+..+.+|+..+++.+..+.......          .
T Consensus        85 ~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
T d2bbkh_          85 PVTL-LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM  163 (355)
T ss_dssp             TTTC-CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred             CCCC-CEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEE
Confidence            9998 6666665332       2235689999999876654  56789999999988777654221100          0


Q ss_pred             --------------------------------------EEcCCCEEEEEc-CCcEEEEEcCCCceee---eeCC------
Q 021744          197 --------------------------------------MISEGPWIFIGV-TNFVKAWNTQTNTDLS---LSGP------  228 (308)
Q Consensus       197 --------------------------------------~~~~~~~l~~~~-d~~i~~wd~~~~~~~~---~~~~------  228 (308)
                                                            ...++..++.+. ++.+++|++..++...   ...+      
T Consensus       164 ~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  243 (355)
T d2bbkh_         164 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA  243 (355)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred             EcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEe
Confidence                                                  112333444444 7788999888775431   1111      


Q ss_pred             ----CCCEEEEEEeCC--EEEEEcCC----------CeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCe-EEEe
Q 021744          229 ----VGQVYAMAVGND--LLFAGTQD----------GAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTS-LLGS  290 (308)
Q Consensus       229 ----~~~v~~~~~~~~--~l~~g~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~-l~~s  290 (308)
                          ......++++++  .++....+          ..|.+||..++    +.+..+..+ ..+.. +|+|||+. |+++
T Consensus       244 ~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~----~~~~~~~~~-~~~~~~a~spDG~~~l~v~  318 (355)
T d2bbkh_         244 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG----ERLAKFEMG-HEIDSINVSQDEKPLLYAL  318 (355)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC----CEEEEEEEE-EEECEEEECCSSSCEEEEE
T ss_pred             eeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCC----cEEEEecCC-CCEEEEEEcCCCCeEEEEE
Confidence                112234778887  44333222          46999999987    556666543 34556 99999984 4444


Q ss_pred             e--ceEEEEee--cCcee
Q 021744          291 V--SFIMFIGQ--NNKGV  304 (308)
Q Consensus       291 ~--s~~i~~~~--~~~~~  304 (308)
                      +  +..|+++.  +.+.+
T Consensus       319 ~~~d~~i~v~D~~tg~~~  336 (355)
T d2bbkh_         319 STGDKTLYIHDAESGEEL  336 (355)
T ss_dssp             ETTTTEEEEEETTTCCEE
T ss_pred             ECCCCEEEEEECCCCCEE
Confidence            3  45555554  44433

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.43  E-value=1.2e-11  Score=107.34  Aligned_cols=128  Identities=5%  Similarity=-0.149  Sum_probs=88.4

Q ss_pred             CCCeEEEeecCCCCCCCCCcccccCCCCCCccccccc--eeEEecCCCe-eecc---------CCCcEEEEECCCCCCcc
Q 021744           34 RQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAA--AKRFANNTWG-RNNN---------FNNHSNNYRAGNSKNSN  101 (308)
Q Consensus        34 ~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~--~i~~s~~g~~-~s~~---------~d~~i~vwd~~~~~~~~  101 (308)
                      .|+.+.+||+.++...   .+    .....+..|...  ++.|||||++ +.++         .++.+.|||+++++.. 
T Consensus        34 ~~~~~~~~~~~t~~~~---~~----~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-  105 (470)
T d2bgra1          34 QENNILVFNAEYGNSS---VF----LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-  105 (470)
T ss_dssp             SSSCEEEEETTTCCEE---EE----ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-
T ss_pred             cCCcEEEEECCCCCEE---EE----EchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc-
Confidence            4788999999987211   11    112233444444  7899999998 6653         3567899999988654 


Q ss_pred             cccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeC------------------cccceEEEEEeCCCC
Q 021744          102 INNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEG------------------HQKVVSGITLPSGSD  163 (308)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~------------------h~~~v~~~~~~~~~~  163 (308)
                       ....+...+....|+|+|..++-..++.+++|+..++ +..+....                  ..+....+.|+|||+
T Consensus       106 -~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g-~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk  183 (470)
T d2bgra1         106 -TEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNL-PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT  183 (470)
T ss_dssp             -CSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTS-CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS
T ss_pred             -ccccCCccccccccccCcceeeEeecccceEEECCCC-ceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCC
Confidence             4455566688899999998855567889999999887 33332221                  112345678999999


Q ss_pred             EEEEeeCC
Q 021744          164 KLYSGSKD  171 (308)
Q Consensus       164 ~l~s~s~d  171 (308)
                      +|+....|
T Consensus       184 ~ia~~~~d  191 (470)
T d2bgra1         184 FLAYAQFN  191 (470)
T ss_dssp             EEEEEEEE
T ss_pred             ccceeEec
Confidence            99887654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.40  E-value=1.5e-12  Score=109.52  Aligned_cols=225  Identities=6%  Similarity=-0.050  Sum_probs=135.1

Q ss_pred             cCCCeEEEeecCCCCCCCCCcccccCCCCCCcc---ccccceeEEecCCCe-eecc-CCCcEEEEECCCCCCccccccee
Q 021744           33 TRQKVCNYWRAGKCNRFPCPYLHRELPLPPAAT---ANGAAAKRFANNTWG-RNNN-FNNHSNNYRAGNSKNSNINNRAV  107 (308)
Q Consensus        33 s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~---gh~~~~i~~s~~g~~-~s~~-~d~~i~vwd~~~~~~~~~~~~~~  107 (308)
                      +.|++|++||..+...      ..+.+.+....   +.....++|+|||++ +.+. .++++.+||+.+++........ 
T Consensus        93 ~~d~~v~v~D~~t~~~------~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~-  165 (368)
T d1mdah_          93 KRTDYVEVFDPVTFLP------IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSA-  165 (368)
T ss_dssp             SEEEEEEEECTTTCCE------EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECS-
T ss_pred             ccCCeEEEEECCCCcE------eeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeecc-
Confidence            4688999999887621      01111111111   111116899999999 5554 6799999999877554221110 


Q ss_pred             eeeeeeeeeecCC--ceEEeeCCCeEEEEEcCCCceee-----eEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCC
Q 021744          108 IKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLL-----TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA  180 (308)
Q Consensus       108 ~~~~~~~~~~~~~--~~~~g~~d~~i~iwd~~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~  180 (308)
                          .+....+.+  ..+..+.||.+.+++........     ..+..+...+....+.+++..+.+.  .+.+.++++.
T Consensus       166 ----~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~  239 (368)
T d1mdah_         166 ----SCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIP  239 (368)
T ss_dssp             ----SCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECC
T ss_pred             ----CcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeec
Confidence                111122222  33566778888888876552111     1122344555667777777655544  4556677766


Q ss_pred             CCeEEEEEe---------------CCCeeEEEEcCCCEEEEEc----------CCcEEEEEcCCCceeeeeCCCCCEEEE
Q 021744          181 SGQCAGVIN---------------LGGEVGCMISEGPWIFIGV----------TNFVKAWNTQTNTDLSLSGPVGQVYAM  235 (308)
Q Consensus       181 ~~~~~~~~~---------------~~~~v~~~~~~~~~l~~~~----------d~~i~~wd~~~~~~~~~~~~~~~v~~~  235 (308)
                      .++......               .......+.+++..+++..          ...|.+||..+++......+...+.++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~  319 (368)
T d1mdah_         240 AAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAI  319 (368)
T ss_dssp             SSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEE
T ss_pred             CCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEE
Confidence            554433221               1122345567777665432          125899999999877333344578899


Q ss_pred             EEeCC----EEEEEcCCCeEEEEEcCCCCcccccceeccccCC
Q 021744          236 AVGND----LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTD  274 (308)
Q Consensus       236 ~~~~~----~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  274 (308)
                      +|+||    +++++..++.|++||..++    +.+.++.....
T Consensus       320 a~spDG~~~ly~s~~~~~~v~v~D~~tg----k~~~~i~~g~~  358 (368)
T d1mdah_         320 IAAQDGASDNYANSAGTEVLDIYDAASD----QDQSSVELDKG  358 (368)
T ss_dssp             EECCSSSCEEEEEETTTTEEEEEESSSC----EEEEECCCCSC
T ss_pred             EECCCCCEEEEEEeCCCCeEEEEECCCC----CEEEEEECCCC
Confidence            99998    3567788999999999998    66777764433

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.28  E-value=9.3e-11  Score=98.25  Aligned_cols=220  Identities=9%  Similarity=-0.032  Sum_probs=129.0

Q ss_pred             eeEEecCCCe-ee----------ccCCCcEEEEECCCCCCcccccc------eeeeeeeeeeeecCCce-EEe-eCCCeE
Q 021744           71 AKRFANNTWG-RN----------NNFNNHSNNYRAGNSKNSNINNR------AVIKTDILCRNWVQGNC-MYG-EKCKFL  131 (308)
Q Consensus        71 ~i~~s~~g~~-~s----------~~~d~~i~vwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~g-~~d~~i  131 (308)
                      .++++|||+. +.          |+.|++|++||..+++.......      ........+.|+|+|+. +++ ..++.+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence            5889999987 43          35678899999988865432211      11122456889999976 334 467999


Q ss_pred             EEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe-------CCCeeE-EEEcCCCE
Q 021744          132 HSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-------LGGEVG-CMISEGPW  203 (308)
Q Consensus       132 ~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~-------~~~~v~-~~~~~~~~  203 (308)
                      .+||+.++ +....+..+.....   +......++..+.||++.++++..........       ...... ........
T Consensus       149 ~~~d~~~~-~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  224 (368)
T d1mdah_         149 AGLSVPGA-SDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM  224 (368)
T ss_dssp             EEEEETTT-EEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTE
T ss_pred             EEEECCCC-cEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcE
Confidence            99999998 77777765543321   11234567778888998888887654333322       111111 11222333


Q ss_pred             EEEEcCCcEEEEEcCCCceeeee---CC----------CCCEEEEEEeCC--EEE-EEcCC--------CeEEEEEcCCC
Q 021744          204 IFIGVTNFVKAWNTQTNTDLSLS---GP----------VGQVYAMAVGND--LLF-AGTQD--------GAILAWKFNVT  259 (308)
Q Consensus       204 l~~~~d~~i~~wd~~~~~~~~~~---~~----------~~~v~~~~~~~~--~l~-~g~~d--------g~i~iwd~~~~  259 (308)
                      ++....+.+++++...++...+.   .+          ......++++++  .++ ....+        ..|.+||..++
T Consensus       225 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~  304 (368)
T d1mdah_         225 LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG  304 (368)
T ss_dssp             EEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred             EEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC
Confidence            44444566666666655433111   11          111234677777  333 22222        35889999987


Q ss_pred             CcccccceeccccCCCeEE-EEecCCCe-EEEee--ceEEEEee
Q 021744          260 TNCFEPAASLKVHTDSNRA-HFSRDVTS-LLGSV--SFIMFIGQ  299 (308)
Q Consensus       260 ~~~~~~~~~~~~~~~~v~~-~~s~d~~~-l~~s~--s~~i~~~~  299 (308)
                          +.+..+.. ...+.. +|+|||+. |+++.  +..|+++.
T Consensus       305 ----~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D  343 (368)
T d1mdah_         305 ----QTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYD  343 (368)
T ss_dssp             ----CEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             ----cEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEE
Confidence                55666653 345666 99999974 54544  45555554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.00  E-value=1.5e-07  Score=76.23  Aligned_cols=214  Identities=11%  Similarity=-0.003  Sum_probs=138.4

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEee-
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLE-  147 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~-  147 (308)
                      .++++|||++ ++...+++|..|+.+....   ........+..+++.++|.+ ++...++.+..++..........+. 
T Consensus        32 ~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~---~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~  108 (302)
T d2p4oa1          32 NLASAPDGTIFVTNHEVGEIVSITPDGNQQ---IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLT  108 (302)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTCCEE---EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             CEEECCCCCEEEEeCCCCEEEEEeCCCCEE---EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccc
Confidence            6899999999 9999999888888643311   22233345788899999987 6666777788777654322222221 


Q ss_pred             -CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCC-----------CeeEEEEcCCCEEEE-Ec-CCcEE
Q 021744          148 -GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-----------GEVGCMISEGPWIFI-GV-TNFVK  213 (308)
Q Consensus       148 -~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~-----------~~v~~~~~~~~~l~~-~~-d~~i~  213 (308)
                       ........+++.++++++++-+.++.+..+|...+.........           .....+..++..+.. .. .+.|.
T Consensus       109 ~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~  188 (302)
T d2p4oa1         109 LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLL  188 (302)
T ss_dssp             CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEE
T ss_pred             cCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEE
Confidence             23456789999999999999889999999999887654433311           112334444555554 34 77888


Q ss_pred             EEEcCCCcee---eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EE---ecCC
Q 021744          214 AWNTQTNTDL---SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HF---SRDV  284 (308)
Q Consensus       214 ~wd~~~~~~~---~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~---s~d~  284 (308)
                      .++.......   ...........+++.++  ++++...++.|..++...+.   ..+..........+. +|   ++|+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~---~~~~~~~~~~~~pt~vafg~~~~D~  265 (302)
T d2p4oa1         189 RIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST---TIIAQAEQGVIGSTAVAFGQTEGDC  265 (302)
T ss_dssp             EEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCE---EEEECGGGTCTTEEEEEECCSTTTT
T ss_pred             eccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCE---EEEEecCCCCCCceEEEEcCCCCCC
Confidence            8888765332   11122334567999998  66666678889888766531   233444434444556 99   6788


Q ss_pred             CeEEEe
Q 021744          285 TSLLGS  290 (308)
Q Consensus       285 ~~l~~s  290 (308)
                      +.|.++
T Consensus       266 ~~Lyvt  271 (302)
T d2p4oa1         266 TAIYVV  271 (302)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence            877643

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.89  E-value=2.6e-07  Score=77.86  Aligned_cols=176  Identities=6%  Similarity=-0.004  Sum_probs=112.4

Q ss_pred             eeccCCCcEEEEECCCCCCcccc-----------------------------cceeeeeeeeeeeecCCce--EEeeCCC
Q 021744           81 RNNNFNNHSNNYRAGNSKNSNIN-----------------------------NRAVIKTDILCRNWVQGNC--MYGEKCK  129 (308)
Q Consensus        81 ~s~~~d~~i~vwd~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~--~~g~~d~  129 (308)
                      +|++.+|+|++|++.+++.+...                             -..|.-......+.++|+.  +....++
T Consensus        15 ~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~   94 (441)
T d1qnia2          15 WSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANT   94 (441)
T ss_dssp             EECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTT
T ss_pred             EeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCCC
Confidence            78999999999999766532210                             0011112333445788866  4556789


Q ss_pred             eEEEEEcCCCceeeeEee-CcccceEEEEEeCCCCE--EEEeeCCC-----------------cEEEEeCCCCeEEEEEe
Q 021744          130 FLHSWTVGDGFKLLTQLE-GHQKVVSGITLPSGSDK--LYSGSKDE-----------------TVRVWDCASGQCAGVIN  189 (308)
Q Consensus       130 ~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~--l~s~s~dg-----------------~v~~wd~~~~~~~~~~~  189 (308)
                      .|.++|+.+. +..+.+. .+...+..++|+|+++.  ++..+.+.                 .+..+|..+.+...++.
T Consensus        95 rVavIDl~t~-k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          95 RVARIRLDIM-KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             EEEEEETTTT-EEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             EEEEEECCCC-cEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            9999999998 5655554 35678899999999874  44444332                 23458888887777766


Q ss_pred             CCCee--EEEEcCCCEEEEEc------------------------------------------CCcEEEEEcCCCcee-e
Q 021744          190 LGGEV--GCMISEGPWIFIGV------------------------------------------TNFVKAWNTQTNTDL-S  224 (308)
Q Consensus       190 ~~~~v--~~~~~~~~~l~~~~------------------------------------------d~~i~~wd~~~~~~~-~  224 (308)
                      .....  ..+.++++++++++                                          ++.+.+++....+.. .
T Consensus       174 v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~  253 (441)
T d1qnia2         174 VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRY  253 (441)
T ss_dssp             ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEE
T ss_pred             cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEE
Confidence            33322  23357777776543                                          223333333333333 3


Q ss_pred             eeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCC
Q 021744          225 LSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       225 ~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~  258 (308)
                      +... .....+.++||   .++++..+++|.+||+.+
T Consensus       254 IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         254 IPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             ECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             EeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            3333 33577999999   567788999999999875

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.82  E-value=1e-08  Score=88.47  Aligned_cols=135  Identities=8%  Similarity=0.029  Sum_probs=96.8

Q ss_pred             eeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEe-----eCcccceEEEEEeCCCCEEEEeeC---------CCcEEEE
Q 021744          112 ILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQL-----EGHQKVVSGITLPSGSDKLYSGSK---------DETVRVW  177 (308)
Q Consensus       112 ~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~s~---------dg~v~~w  177 (308)
                      ....|.+++.++. ..++.|.+||+.++ +....+     ..|...|.++.|+||+++|+.++.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~-~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLY-KQENNILVFNAEYG-NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEE-ESSSCEEEEETTTC-CEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEE-EcCCcEEEEECCCC-CEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            3456777777655 35788999999998 444333     345578999999999999988754         5678999


Q ss_pred             eCCCCeEEEEEeCCCeeE--EEEcCCCEEEEEcCCcEEEEEcCCCceeeee--C-----------------CCCCEEEEE
Q 021744          178 DCASGQCAGVINLGGEVG--CMISEGPWIFIGVTNFVKAWNTQTNTDLSLS--G-----------------PVGQVYAMA  236 (308)
Q Consensus       178 d~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~--~-----------------~~~~v~~~~  236 (308)
                      |+++++......++..+.  .++|+|+.++...++.+.+|+..+++...+.  +                 ..+....+.
T Consensus        98 d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~  177 (470)
T d2bgra1          98 DLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW  177 (470)
T ss_dssp             ETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred             ECCCCcccccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence            999987654333444444  3468999999888999999999988765322  1                 112345678


Q ss_pred             EeCC--EEEEEcCC
Q 021744          237 VGND--LLFAGTQD  248 (308)
Q Consensus       237 ~~~~--~l~~g~~d  248 (308)
                      |+||  .|+....|
T Consensus       178 wSPDGk~ia~~~~d  191 (470)
T d2bgra1         178 WSPNGTFLAYAQFN  191 (470)
T ss_dssp             ECTTSSEEEEEEEE
T ss_pred             ECCCCCccceeEec
Confidence            9999  77766544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.79  E-value=1e-06  Score=69.50  Aligned_cols=184  Identities=11%  Similarity=0.022  Sum_probs=113.6

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeC
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEG  148 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~  148 (308)
                      .+++.++|.+ ++....+.+++++-.+....  ...........+++.+++.. ++...+..+..++............ 
T Consensus        61 gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~--~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~-  137 (260)
T d1rwia_          61 GLAVDGAGTVYVTDFNNRVVTLAAGSNNQTV--LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT-  137 (260)
T ss_dssp             CEEECTTCCEEEEETTTEEEEECTTCSCCEE--CCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCC-
T ss_pred             EEEEcCCCCEEEeeeeeceeeeeeeccceee--eeeeeeeecccccccccceeEeeccccccccccccccceeeeeeec-
Confidence            6899999998 77777777777765444322  11111123556777777766 4444556677777655422222222 


Q ss_pred             cccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEE-e-CCCeeE-EEEcCCCEEEEEc-CCcEEEEEcCCCceee
Q 021744          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI-N-LGGEVG-CMISEGPWIFIGV-TNFVKAWNTQTNTDLS  224 (308)
Q Consensus       149 h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~-~-~~~~v~-~~~~~~~~l~~~~-d~~i~~wd~~~~~~~~  224 (308)
                      .......++++++++.+++...++.|..+|.......... . ...+.. ++.++++++++.. .+.|..++........
T Consensus       138 ~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~  217 (260)
T d1rwia_         138 GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV  217 (260)
T ss_dssp             SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEE
T ss_pred             ccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEE
Confidence            2345578999999998888888899999998755433221 2 222322 2346778777766 6788888776554443


Q ss_pred             ee-CCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcC
Q 021744          225 LS-GPVGQVYAMAVGND--LLFAGTQDGAILAWKFN  257 (308)
Q Consensus       225 ~~-~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~  257 (308)
                      +. ..-.....|+++++  ++++-..+++|+.++..
T Consensus       218 ~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         218 LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             CCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             EccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            32 22346789999987  55555566666655543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.77  E-value=9.5e-06  Score=64.39  Aligned_cols=184  Identities=11%  Similarity=0.122  Sum_probs=117.2

Q ss_pred             eeEEecCCCe---eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEe
Q 021744           71 AKRFANNTWG---RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQL  146 (308)
Q Consensus        71 ~i~~s~~g~~---~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~  146 (308)
                      .+++.++...   +..+.++.|.+++.. ++...............+.+.+++.. ++....+.+.+++....  .+..+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~--~~~~~  150 (279)
T d1q7fa_          74 RVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN--VLHKF  150 (279)
T ss_dssp             EEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC--EEEEE
T ss_pred             cccccccccccceeccCCcccccccccc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc--eeecc
Confidence            4666655443   334455667777753 32221111111122455666677766 55556677778776543  34444


Q ss_pred             --eCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCC---eeE--EEEcCCCEEEEEc--CCcEEEEEc
Q 021744          147 --EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG---EVG--CMISEGPWIFIGV--TNFVKAWNT  217 (308)
Q Consensus       147 --~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~---~v~--~~~~~~~~l~~~~--d~~i~~wd~  217 (308)
                        ..+......+++.++++.+++....+.|++||.. ++.+.++...+   ...  ++.++++++++-.  +..|.+|+.
T Consensus       151 g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~  229 (279)
T d1q7fa_         151 GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ  229 (279)
T ss_dssp             ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             cccccccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC
Confidence              3455677889999999888888889999999965 67777775221   223  3457888777643  447999985


Q ss_pred             CCCcee-eee--CCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCC
Q 021744          218 QTNTDL-SLS--GPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       218 ~~~~~~-~~~--~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~  259 (308)
                       +++.+ .+.  ........+++.|+ .|+++..++.|++|.....
T Consensus       230 -~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         230 -DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             -TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred             -CCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEeeee
Confidence             45544 332  22346889999999 6666778899999998764

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=1.2e-05  Score=62.95  Aligned_cols=207  Identities=13%  Similarity=0.048  Sum_probs=119.3

Q ss_pred             cEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEee-C--CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCC
Q 021744           88 HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGE-K--CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD  163 (308)
Q Consensus        88 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~-~--d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~  163 (308)
                      .|.|-|.+..+..  .+......+..-.|+|+|.. +... .  ...+.+.+...+.  ...+..+........|+|+++
T Consensus        20 ~l~i~d~dG~~~~--~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~   95 (269)
T d2hqsa1          20 ELRVSDYDGYNQF--VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGS   95 (269)
T ss_dssp             EEEEEETTSCSCE--EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEEEECCSSCEEEEEECTTSS
T ss_pred             EEEEEcCCCCCcE--EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc--eeEEeeeecccccceecCCCC
Confidence            5777777544332  22223334667899999976 3332 2  2346666666652  445556778889999999999


Q ss_pred             EEEEeeC-CCcEE--EEeCCCCeEEEEEeCCCe-eE-EEEcCCCEEE-EEc-CC--cEEEEEcCCCceeeeeCCCCCEEE
Q 021744          164 KLYSGSK-DETVR--VWDCASGQCAGVINLGGE-VG-CMISEGPWIF-IGV-TN--FVKAWNTQTNTDLSLSGPVGQVYA  234 (308)
Q Consensus       164 ~l~s~s~-dg~v~--~wd~~~~~~~~~~~~~~~-v~-~~~~~~~~l~-~~~-d~--~i~~wd~~~~~~~~~~~~~~~v~~  234 (308)
                      .++.... ++...  .+.....+.......... .. ....+++.++ +.. ++  .|.+.++..+....+.........
T Consensus        96 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~  175 (269)
T d2hqsa1          96 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQD  175 (269)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEE
T ss_pred             eeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccc
Confidence            8876554 33322  333333333222222222 12 2345555544 333 44  677778887776666666777888


Q ss_pred             EEEeCC---EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEE-Eee---ceEEEEeecCc
Q 021744          235 MAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLL-GSV---SFIMFIGQNNK  302 (308)
Q Consensus       235 ~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~-~s~---s~~i~~~~~~~  302 (308)
                      ..++|+   ++......+...+|......   .. ..+..+...... .|||||+.|+ .+.   ...||++.-+.
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~---~~-~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg  247 (269)
T d2hqsa1         176 ADVSSDGKFMVMVSSNGGQQHIAKQDLAT---GG-VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG  247 (269)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTT---CC-EEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             cccccccceeEEEeecCCceeeeEeeccc---cc-ceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            899999   44444555555555554432   11 223334455566 9999999987 332   45666665443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.75  E-value=1.2e-05  Score=63.68  Aligned_cols=212  Identities=8%  Similarity=0.026  Sum_probs=128.2

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCccccc-----ceeeeeeeeeeeecC-Cce--EEeeCCCeEEEEEcCCCce
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN-----RAVIKTDILCRNWVQ-GNC--MYGEKCKFLHSWTVGDGFK  141 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~--~~g~~d~~i~iwd~~~~~~  141 (308)
                      .++++|+|+. ++-...+.|++||.+ ++.+....     .........+.+..+ +..  +..+.++.|..++...  +
T Consensus        27 gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g--~  103 (279)
T d1q7fa_          27 GVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG--Q  103 (279)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS--C
T ss_pred             EEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc--c
Confidence            6899999999 776777889999974 33221110     000111222333333 233  2234556777777643  3


Q ss_pred             eeeEee-CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeC---CCeeEEE--EcCCCEEEEEc-CCcEEE
Q 021744          142 LLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL---GGEVGCM--ISEGPWIFIGV-TNFVKA  214 (308)
Q Consensus       142 ~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~---~~~v~~~--~~~~~~l~~~~-d~~i~~  214 (308)
                      ....+. ........+++.+++..+++....+.+.+++.. ++.+..+..   ......+  .+++.++++.. .+.|++
T Consensus       104 ~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~  182 (279)
T d1q7fa_         104 FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKV  182 (279)
T ss_dssp             EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEE
T ss_pred             ceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceee
Confidence            344442 234567889999999988887777888888854 666666642   2222333  35666666655 779999


Q ss_pred             EEcCCCceeee--eCCCCCEEEEEEeCC--EEEEEc-CCCeEEEEEcCCCCcccccceecccc--CCCeEE-EEecCCCe
Q 021744          215 WNTQTNTDLSL--SGPVGQVYAMAVGND--LLFAGT-QDGAILAWKFNVTTNCFEPAASLKVH--TDSNRA-HFSRDVTS  286 (308)
Q Consensus       215 wd~~~~~~~~~--~~~~~~v~~~~~~~~--~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~v~~-~~s~d~~~  286 (308)
                      ||........+  .+.......|++.++  ++++-. .++.|.+|+.. +    +.+.++...  ...... ++.|||.+
T Consensus       183 ~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G----~~~~~~~~~~~~~~p~~vav~~dG~l  257 (279)
T d1q7fa_         183 FNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G----QLISALESKVKHAQCFDVALMDDGSV  257 (279)
T ss_dssp             EETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S----CEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred             eecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-C----CEEEEEeCCCCCCCEeEEEEeCCCcE
Confidence            99765444344  234556889999988  444433 45679999854 3    445555322  223455 88999875


Q ss_pred             EEEee
Q 021744          287 LLGSV  291 (308)
Q Consensus       287 l~~s~  291 (308)
                      +++..
T Consensus       258 ~V~~~  262 (279)
T d1q7fa_         258 VLASK  262 (279)
T ss_dssp             EEEET
T ss_pred             EEEeC
Confidence            55443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.73  E-value=7.4e-06  Score=64.31  Aligned_cols=219  Identities=8%  Similarity=0.022  Sum_probs=129.4

Q ss_pred             eeEEecCCCe-ee-ccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEee
Q 021744           71 AKRFANNTWG-RN-NNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLE  147 (308)
Q Consensus        71 ~i~~s~~g~~-~s-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~  147 (308)
                      .+++.++|.. ++ .+..+.+..++............ .......+++.+++.+ ++....+.+++++-.+. ..+....
T Consensus        18 ~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~-~~~~~~~   95 (260)
T d1rwia_          18 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFN-GLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN-QTVLPFD   95 (260)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEEC----CEEECCCC-SCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC-CEECCCC
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccC-CccCceEEEEcCCCCEEEeeeeeceeeeeeeccc-eeeeeee
Confidence            7999999998 54 45557777776643322111111 1122456677888877 55555566666554444 3332222


Q ss_pred             CcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEE-e-CCCee-EEEEcCCCEEEEEc-CCcEEEEEcCCCcee
Q 021744          148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI-N-LGGEV-GCMISEGPWIFIGV-TNFVKAWNTQTNTDL  223 (308)
Q Consensus       148 ~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~-~-~~~~v-~~~~~~~~~l~~~~-d~~i~~wd~~~~~~~  223 (308)
                       .......++++++++++++-..+..+..++.......... . ...+- .++.++++++++.. ++.|..+|.......
T Consensus        96 -~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~  174 (260)
T d1rwia_          96 -GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV  174 (260)
T ss_dssp             -SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE
T ss_pred             -eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceee
Confidence             2356789999999988777766777878776654322211 1 11221 23346777766655 778999998876555


Q ss_pred             ee-eCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecc-ccCCCeEE-EEecCCCeEEEee-ceEEEE
Q 021744          224 SL-SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK-VHTDSNRA-HFSRDVTSLLGSV-SFIMFI  297 (308)
Q Consensus       224 ~~-~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~-~~s~d~~~l~~s~-s~~i~~  297 (308)
                      .+ .........|++.++  ++++....+.|..++....     ....+. ..-..... ++.++|.++++-. ...|+.
T Consensus       175 ~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~-----~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~  249 (260)
T d1rwia_         175 VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST-----TSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVK  249 (260)
T ss_dssp             ECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS-----CCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred             eeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC-----eEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEE
Confidence            33 244466789999988  6667777888888876653     122222 12233455 8999987666533 444443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=1.5e-06  Score=68.45  Aligned_cols=167  Identities=11%  Similarity=0.027  Sum_probs=96.7

Q ss_pred             eeEEecCCCe-e-eccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCC--eEEEEEcCCCceeee
Q 021744           71 AKRFANNTWG-R-NNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCK--FLHSWTVGDGFKLLT  144 (308)
Q Consensus        71 ~i~~s~~g~~-~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~--~i~iwd~~~~~~~~~  144 (308)
                      ...++|+|.. + ....++...++.......................+++++..  ++...++  .|.+.++....  ..
T Consensus        87 ~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~--~~  164 (269)
T d2hqsa1          87 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--PQ  164 (269)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC--CE
T ss_pred             cceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccccc--ce
Confidence            6789999998 4 33334443443332221111111112222333345555543  4444444  45555665552  33


Q ss_pred             EeeCcccceEEEEEeCCCCEEEEeeCCC---cEEEEeCCCCeEEEEEe-CCCeeEEEEcCCCEEEE-Ec---CCcEEEEE
Q 021744          145 QLEGHQKVVSGITLPSGSDKLYSGSKDE---TVRVWDCASGQCAGVIN-LGGEVGCMISEGPWIFI-GV---TNFVKAWN  216 (308)
Q Consensus       145 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg---~v~~wd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~-~~---d~~i~~wd  216 (308)
                      .+..+........|+|+++.++..+.++   .+.+.+...+....... .......++|||+.|+- +.   ...|.+++
T Consensus       165 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~  244 (269)
T d2hqsa1         165 RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVS  244 (269)
T ss_dssp             ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             eeecccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEE
Confidence            4444566777889999999887766544   44555655554322222 22223356799998873 33   33789999


Q ss_pred             cCCCceeeeeCCCCCEEEEEEeC
Q 021744          217 TQTNTDLSLSGPVGQVYAMAVGN  239 (308)
Q Consensus       217 ~~~~~~~~~~~~~~~v~~~~~~~  239 (308)
                      +..+....+......+...+|+|
T Consensus       245 ~dg~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         245 TDGRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             TTSCCEEECCCSSSEEEEEEECC
T ss_pred             CCCCCEEEEeCCCCcEEeEEeCC
Confidence            99888777777777888899998

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.61  E-value=1.7e-05  Score=64.08  Aligned_cols=186  Identities=7%  Similarity=0.087  Sum_probs=114.2

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCccccc--ceee-eeeeeeeeecCCce-EEee---------------CCCe
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINN--RAVI-KTDILCRNWVQGNC-MYGE---------------KCKF  130 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~-~~g~---------------~d~~  130 (308)
                      .++|.++++. +.+...+.|...+.+.........  .... .....+.+.++|.+ ++..               ..|.
T Consensus        75 Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~  154 (314)
T d1pjxa_          75 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGS  154 (314)
T ss_dssp             EEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred             eEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCce
Confidence            6999999987 666666678888876543211111  1111 12455677788766 3321               1344


Q ss_pred             EEEEEcCCCceeeeEeeCcccceEEEEEeCCCC-----EEEEeeCCCcEEEEeCCCCeEEEE---Ee-C----CCeeE--
Q 021744          131 LHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD-----KLYSGSKDETVRVWDCASGQCAGV---IN-L----GGEVG--  195 (308)
Q Consensus       131 i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-----~l~s~s~dg~v~~wd~~~~~~~~~---~~-~----~~~v~--  195 (308)
                      |..++....  .. .+...-.....++|+|++.     +.++-+..+.|..||+.....+..   +. .    .....  
T Consensus       155 v~~~~~dg~--~~-~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGi  231 (314)
T d1pjxa_         155 IYCFTTDGQ--MI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM  231 (314)
T ss_dssp             EEEECTTSC--EE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred             EEEEeecCc--ee-EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceee
Confidence            555554322  22 2222334457889988764     445667788899988764322221   11 1    11122  


Q ss_pred             EEEcCCCEEEEEc-CCcEEEEEcCCCcee-eeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCCC
Q 021744          196 CMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       196 ~~~~~~~~l~~~~-d~~i~~wd~~~~~~~-~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~~  259 (308)
                      ++-.+|++.++.. .+.|.+||.++++.. .+..+...+++++|.|+   ++++.+.+|.|..+++...
T Consensus       232 avD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         232 DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            2346788776654 789999999888765 45555667899999998   6677788899999887654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.50  E-value=2.8e-05  Score=62.28  Aligned_cols=184  Identities=9%  Similarity=-0.004  Sum_probs=116.6

Q ss_pred             eeeeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCC--eEEEE
Q 021744          111 DILCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG--QCAGV  187 (308)
Q Consensus       111 ~~~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~--~~~~~  187 (308)
                      +..+++.++|++ ++...++.|..++....   ...+......+.+++|+++++++++...++.+..|+....  .....
T Consensus        30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~---~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          30 LENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             cCCEEECCCCCEEEEeCCCCEEEEEeCCCC---EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            445788899877 66677899988887654   2334445678899999999999999888888888876542  22222


Q ss_pred             Ee--CCCeeEEE--EcCCCEEEEEc-CCcEEEEEcCCCceeee-----------eCCCCCEEEEEEeCC-EEEEEcCCCe
Q 021744          188 IN--LGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTNTDLSL-----------SGPVGQVYAMAVGND-LLFAGTQDGA  250 (308)
Q Consensus       188 ~~--~~~~v~~~--~~~~~~l~~~~-d~~i~~wd~~~~~~~~~-----------~~~~~~v~~~~~~~~-~l~~g~~dg~  250 (308)
                      ..  .......+  .++++++++.. ++.+..+|...+.....           .........+.+..+ ++++.+..+.
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~  186 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKML  186 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTE
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCe
Confidence            22  22334443  36676666655 77888888887653311           112235677888888 7778888999


Q ss_pred             EEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          251 ILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      |..++...... ......+. ....... +|.++|.+.++.. ...|+...
T Consensus       187 i~~~~~~~~~~-~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~  235 (302)
T d2p4oa1         187 LLRIPVDSTDK-PGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIA  235 (302)
T ss_dssp             EEEEEBCTTSC-BCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred             EEecccccccc-cccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEEC
Confidence            99999876422 11111111 2222333 8888888666543 44444443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.49  E-value=2.1e-05  Score=64.90  Aligned_cols=220  Identities=9%  Similarity=0.050  Sum_probs=114.7

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCC-CCcccccceeeeeeeeeeeecCCce--EEee--CCCeEEEEEc--------
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNS-KNSNINNRAVIKTDILCRNWVQGNC--MYGE--KCKFLHSWTV--------  136 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~--~d~~i~iwd~--------  136 (308)
                      -|+++|+++. .++. .+.+..|.++.. ................+.+++++..  ++..  ..+.|..+.+        
T Consensus        44 ~la~s~d~~~ly~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~  122 (365)
T d1jofa_          44 WMTFDHERKNIYGAA-MKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGN  122 (365)
T ss_dssp             EEEECTTSSEEEEEE-BTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEE
T ss_pred             EEEEcCCCCEEEEEe-CCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcce
Confidence            4899999998 4443 456777877432 1111111111122445566666642  2221  2334443332        


Q ss_pred             ----CCCceeeeE----eeCcccceEEEEEeCCCCEEEEeeC-CCcEEEEeCCC-CeEE--EEEe---C-CCeeE-EEEc
Q 021744          137 ----GDGFKLLTQ----LEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCAS-GQCA--GVIN---L-GGEVG-CMIS  199 (308)
Q Consensus       137 ----~~~~~~~~~----~~~h~~~v~~~~~~~~~~~l~s~s~-dg~v~~wd~~~-~~~~--~~~~---~-~~~v~-~~~~  199 (308)
                          .........    -......+.++.|+|++++++++.. ...|.+|+... +...  ....   . ..+.. .+.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p  202 (365)
T d1jofa_         123 VFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP  202 (365)
T ss_dssp             EEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT
T ss_pred             eEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC
Confidence                211011000    1112234789999999998877764 45788887654 3222  2222   1 12222 3358


Q ss_pred             CCCEEEEEc--CCcEEEEEcCCCcee---e---ee--------------CCCCCEEEEEEeCC--EEEEEc-C-----CC
Q 021744          200 EGPWIFIGV--TNFVKAWNTQTNTDL---S---LS--------------GPVGQVYAMAVGND--LLFAGT-Q-----DG  249 (308)
Q Consensus       200 ~~~~l~~~~--d~~i~~wd~~~~~~~---~---~~--------------~~~~~v~~~~~~~~--~l~~g~-~-----dg  249 (308)
                      +++++.+..  +++|.+|+....+..   .   ..              .+......+.++|+  +|+++. .     .+
T Consensus       203 dg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~  282 (365)
T d1jofa_         203 TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQG  282 (365)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCC
T ss_pred             CCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccce
Confidence            899887544  789999998765422   1   10              11123567899999  555442 2     23


Q ss_pred             eEEEEEcCCCCccccc--ceeccccCCCeEE-EEec-CCCeEEEee
Q 021744          250 AILAWKFNVTTNCFEP--AASLKVHTDSNRA-HFSR-DVTSLLGSV  291 (308)
Q Consensus       250 ~i~iwd~~~~~~~~~~--~~~~~~~~~~v~~-~~s~-d~~~l~~s~  291 (308)
                      .|..|++.......+.  +..........+. +++| +|++|+++.
T Consensus       283 ~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~  328 (365)
T d1jofa_         283 YIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD  328 (365)
T ss_dssp             EEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred             EEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEe
Confidence            4777887654211111  1111122334455 8898 899888765

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.45  E-value=0.0002  Score=57.51  Aligned_cols=224  Identities=11%  Similarity=0.067  Sum_probs=128.4

Q ss_pred             eeEEecCCCe-eeccC-------CCcEEEEECCCCCCcccccc---eeeeeeeeeeeecCCce-EEeeCCCeEEEEEcCC
Q 021744           71 AKRFANNTWG-RNNNF-------NNHSNNYRAGNSKNSNINNR---AVIKTDILCRNWVQGNC-MYGEKCKFLHSWTVGD  138 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~-------d~~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~g~~d~~i~iwd~~~  138 (308)
                      .++|.|+|+. ++...       +++|..||.++++.......   ........+.+.+++.. +.+.....|...+...
T Consensus        22 Gpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g  101 (314)
T d1pjxa_          22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDG  101 (314)
T ss_dssp             EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTS
T ss_pred             EeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCC
Confidence            5789999998 54322       46788888876643211111   11112456788888854 5555566788888876


Q ss_pred             CceeeeEee--Ccc-cceEEEEEeCCCCEEEEeeC---------------CCcEEEEeCCCCeEEEEEe-CCCee-EEEE
Q 021744          139 GFKLLTQLE--GHQ-KVVSGITLPSGSDKLYSGSK---------------DETVRVWDCASGQCAGVIN-LGGEV-GCMI  198 (308)
Q Consensus       139 ~~~~~~~~~--~h~-~~v~~~~~~~~~~~l~s~s~---------------dg~v~~wd~~~~~~~~~~~-~~~~v-~~~~  198 (308)
                      ....+....  +.. .....++++++|.+.++-..               .|.|..++.. ++...... ...+- .++.
T Consensus       102 ~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~  180 (314)
T d1pjxa_         102 TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVR  180 (314)
T ss_dssp             CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEE
T ss_pred             cEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcceeeeeEEC
Confidence            521111111  111 13578999999988776432               2345445443 33333222 12221 2344


Q ss_pred             cCCC----EEEEE-c-CCcEEEEEcCCCcee-------eeeC-CCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcc
Q 021744          199 SEGP----WIFIG-V-TNFVKAWNTQTNTDL-------SLSG-PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNC  262 (308)
Q Consensus       199 ~~~~----~l~~~-~-d~~i~~wd~~~~~~~-------~~~~-~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~  262 (308)
                      +++.    .|+++ . .+.|..||+......       .+.. .......|++..+  ++++....+.|.+||...+   
T Consensus       181 ~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g---  257 (314)
T d1pjxa_         181 HMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG---  257 (314)
T ss_dssp             ECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB---
T ss_pred             CCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCC---
Confidence            5443    45444 3 778988887643222       1111 2234567999888  5556667789999998875   


Q ss_pred             cccceeccccCCCeEE-EEecCCCeEEEee--ceEEEEee
Q 021744          263 FEPAASLKVHTDSNRA-HFSRDVTSLLGSV--SFIMFIGQ  299 (308)
Q Consensus       263 ~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~--s~~i~~~~  299 (308)
                       +.+..+.......+. +|.||++.|.++.  ...||...
T Consensus       258 -~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~  296 (314)
T d1pjxa_         258 -QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             -SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             -EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence             445556555556666 9999997555332  56666644

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.29  E-value=0.00033  Score=54.54  Aligned_cols=220  Identities=10%  Similarity=0.018  Sum_probs=117.3

Q ss_pred             eEEecC--CCeeeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEe----eCC--CeEEEEEcCCCcee
Q 021744           72 KRFANN--TWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYG----EKC--KFLHSWTVGDGFKL  142 (308)
Q Consensus        72 i~~s~~--g~~~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g----~~d--~~i~iwd~~~~~~~  142 (308)
                      ...+|+  |+.+.-..++.|.+.|+..++..  .+...........|+|+|.. +..    +.+  ..|.+++..++ +.
T Consensus         4 ~~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~--~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g-~~   80 (281)
T d1k32a2           4 LLLNPDIHGDRIIFVCCDDLWEHDLKSGSTR--KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG-EI   80 (281)
T ss_dssp             CCEEEEEETTEEEEEETTEEEEEETTTCCEE--EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT-EE
T ss_pred             cccCCCCCCCEEEEEeCCcEEEEECCCCCEE--EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC-ce
Confidence            356888  98822224556777798877543  22233344667789999976 332    222  24777777777 33


Q ss_pred             eeEee-------CcccceEEEEEeCCCCEEEEeeCC------CcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEE-EEc
Q 021744          143 LTQLE-------GHQKVVSGITLPSGSDKLYSGSKD------ETVRVWDCASGQCAGVINLGGEVGCMISEGPWIF-IGV  208 (308)
Q Consensus       143 ~~~~~-------~h~~~v~~~~~~~~~~~l~s~s~d------g~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~-~~~  208 (308)
                      . .+.       ..........|+|+++.|+.....      ..+...+...++.... ..........+++..++ ...
T Consensus        81 ~-~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  158 (281)
T d1k32a2          81 K-RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL-NLGPATHILFADGRRVIGRNT  158 (281)
T ss_dssp             E-ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC-CSCSCSEEEEETTEEEEEESC
T ss_pred             E-EeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe-cCCccceeeecCCCeEEEeec
Confidence            2 221       122345678899999988765332      2344555554443221 11122223344444333 221


Q ss_pred             -C-----------CcEEEEEcCCCceeeeeCCCCCEEEEEEeCC-EEEEEcCC--CeEEEEEcCCCCcccccceeccccC
Q 021744          209 -T-----------NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQD--GAILAWKFNVTTNCFEPAASLKVHT  273 (308)
Q Consensus       209 -d-----------~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~  273 (308)
                       .           ....+......................++++ .+.....+  ..|.++|+.++.     ...+..+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-----~~~lt~~~  233 (281)
T d1k32a2         159 FELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKD-----LRKHTSFT  233 (281)
T ss_dssp             SCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCS-----CEECCCCC
T ss_pred             cccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceecccccccceEEEeCCCCc-----eEEeecCC
Confidence             1           1122223333333333334445566677788 44444443  357777877642     33333332


Q ss_pred             CCeEEEEecCCCeEEEeeceEEEEeecC
Q 021744          274 DSNRAHFSRDVTSLLGSVSFIMFIGQNN  301 (308)
Q Consensus       274 ~~v~~~~s~d~~~l~~s~s~~i~~~~~~  301 (308)
                      ..-...|+|||+.|+-+....||++...
T Consensus       234 ~~~~~~~SpDG~~I~f~~~~~l~~~d~~  261 (281)
T d1k32a2         234 DYYPRHLNTDGRRILFSKGGSIYIFNPD  261 (281)
T ss_dssp             SSCEEEEEESSSCEEEEETTEEEEECTT
T ss_pred             CcccccCcCCCCEEEEEeCCEEEEEECC
Confidence            2222279999999987666678877643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.19  E-value=0.00089  Score=53.70  Aligned_cols=222  Identities=9%  Similarity=0.026  Sum_probs=128.2

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEee-C----CCeEEEEEcCCCceeee
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGE-K----CKFLHSWTVGDGFKLLT  144 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~----d~~i~iwd~~~~~~~~~  144 (308)
                      .++|.++|++ ++-...+.|..|+.++.+... ...........+++.++|.++.+. .    .+.+...+..+. ....
T Consensus        44 G~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~-~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~-~~~~  121 (319)
T d2dg1a1          44 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKR-PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD-NLQD  121 (319)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEEE-EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC-SCEE
T ss_pred             eCEECCCCCEEEEECCCCEEEEEECCCCeEEE-EEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc-eeee
Confidence            5789999988 887788888888876553221 111112235677888888774332 1    234555555544 2222


Q ss_pred             EeeC--cccceEEEEEeCCCCEEEEeeC------CCcEEEEeCCCCeEEEEEe-CCCee-EEEEcCCCEEEEE-c-CCcE
Q 021744          145 QLEG--HQKVVSGITLPSGSDKLYSGSK------DETVRVWDCASGQCAGVIN-LGGEV-GCMISEGPWIFIG-V-TNFV  212 (308)
Q Consensus       145 ~~~~--h~~~v~~~~~~~~~~~l~s~s~------dg~v~~wd~~~~~~~~~~~-~~~~v-~~~~~~~~~l~~~-~-d~~i  212 (308)
                      ....  -......+++.++|++.++-..      .+.+..++...+....... ...+- .++.++++.|.++ . .+.|
T Consensus       122 ~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I  201 (319)
T d2dg1a1         122 IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRL  201 (319)
T ss_dssp             EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred             eccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCce
Confidence            2221  1234678999999987766432      1235555554333222222 12221 2345788876654 3 7899


Q ss_pred             EEEEcCCCce----e-----eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceecc------ccCCC
Q 021744          213 KAWNTQTNTD----L-----SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK------VHTDS  275 (308)
Q Consensus       213 ~~wd~~~~~~----~-----~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~  275 (308)
                      ..||+.....    .     ...........|++.++  +.++....+.|.+||-. +    +.+.++.      ++...
T Consensus       202 ~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~-G----~~l~~i~~P~~~~~~~~~  276 (319)
T d2dg1a1         202 HRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G----YPIGQILIPGRDEGHMLR  276 (319)
T ss_dssp             EEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-S----CEEEEEECTTGGGTCSCB
T ss_pred             EEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC-C----cEEEEEeCCCcCCCcCce
Confidence            9999864311    1     11111234567999888  66666778999999954 4    4444443      23334


Q ss_pred             eEE-EEecCCCeEEEee-------ceEEEEee
Q 021744          276 NRA-HFSRDVTSLLGSV-------SFIMFIGQ  299 (308)
Q Consensus       276 v~~-~~s~d~~~l~~s~-------s~~i~~~~  299 (308)
                      +.+ +|.+++..++...       +..||...
T Consensus       277 ~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~  308 (319)
T d2dg1a1         277 STHPQFIPGTNQLIICSNDIEMGGGSMLYTVN  308 (319)
T ss_dssp             CCEEEECTTSCEEEEEEECGGGTCCEEEEEEE
T ss_pred             eeeEEEeCCCCEEEEEcCCCCcCCceeEEEEe
Confidence            566 9998877666432       45566654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.15  E-value=8.7e-05  Score=61.12  Aligned_cols=150  Identities=9%  Similarity=0.035  Sum_probs=87.3

Q ss_pred             eeEEecCCCe-eec-cCCCcEEEEECCCCCCcccc----cceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCce-
Q 021744           71 AKRFANNTWG-RNN-NFNNHSNNYRAGNSKNSNIN----NRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFK-  141 (308)
Q Consensus        71 ~i~~s~~g~~-~s~-~~d~~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~~-  141 (308)
                      .++|+|+|++ +++ .....|.+|+......+...    ........+.+.|+|++..  ++...++.|.+|++..... 
T Consensus       149 ~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~  228 (365)
T d1jofa_         149 GMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHM  228 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred             EEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCce
Confidence            6999999998 444 44567888876432211100    0111223777899999976  6666789999999876521 


Q ss_pred             eeeE---ee--------------CcccceEEEEEeCCCCEEEEeeC------CCcEEEEeCCCCeEEEE---Ee----CC
Q 021744          142 LLTQ---LE--------------GHQKVVSGITLPSGSDKLYSGSK------DETVRVWDCASGQCAGV---IN----LG  191 (308)
Q Consensus       142 ~~~~---~~--------------~h~~~v~~~~~~~~~~~l~s~s~------dg~v~~wd~~~~~~~~~---~~----~~  191 (308)
                      .+..   +.              .+......+.++|++++|+++..      ...|..|++.....+..   +.    ..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G  308 (365)
T d1jofa_         229 PVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG  308 (365)
T ss_dssp             EEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC
T ss_pred             EEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCC
Confidence            1111   10              12233567899999999877643      22366776654322211   11    11


Q ss_pred             CeeE--EEEc-CCCEEEEEc--CCcEEEEEcCCC
Q 021744          192 GEVG--CMIS-EGPWIFIGV--TNFVKAWNTQTN  220 (308)
Q Consensus       192 ~~v~--~~~~-~~~~l~~~~--d~~i~~wd~~~~  220 (308)
                      ....  .+.+ +|++|+++.  ++.|.+|+++..
T Consensus       309 ~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         309 GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            1222  2344 578777654  678888876544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=0.00089  Score=56.78  Aligned_cols=133  Identities=5%  Similarity=-0.062  Sum_probs=77.9

Q ss_pred             eEEecCCCeEEEeecCCCCCCCCCcccccCCCCCCccccccceeEEecCCCe-eec---------cCCCcEEEEECCCCC
Q 021744           29 STADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWG-RNN---------NFNNHSNNYRAGNSK   98 (308)
Q Consensus        29 ~~s~s~d~~i~~W~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~i~~s~~g~~-~s~---------~~d~~i~vwd~~~~~   98 (308)
                      ++--..++.|.+||+.++...  .++..     ..+.........+|||+++ +.+         +..+.+.++|+.++.
T Consensus        30 ~~~~~~~g~i~~~~~~~~~~~--~l~~~-----~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~  102 (465)
T d1xfda1          30 FIYREQKGTVRLWNVETNTST--VLIEG-----KKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (465)
T ss_dssp             BCCCCSSSCEEEBCGGGCCCE--EEECT-----TTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             EEEEeCCCcEEEEECCCCCEE--EEEcC-----ccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence            344456789999998876220  11110     1111111115689999998 433         345678899998775


Q ss_pred             Ccccc-cceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEe-eCcccce-----------------EEEEEe
Q 021744           99 NSNIN-NRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQL-EGHQKVV-----------------SGITLP  159 (308)
Q Consensus        99 ~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~-~~h~~~v-----------------~~~~~~  159 (308)
                      ..... .......+....|+|+|..++=-.++.|.+.+..++ ..++.. .+....|                 ..+-|+
T Consensus       103 ~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~-~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WS  181 (465)
T d1xfda1         103 PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGK-QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS  181 (465)
T ss_dssp             CEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSS-CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC
T ss_pred             eeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCC-ceEEEecccCcceeeccccchhhhhhhccccceEEEC
Confidence            43211 111222356688999997744445778888888766 333322 2222111                 467799


Q ss_pred             CCCCEEEEee
Q 021744          160 SGSDKLYSGS  169 (308)
Q Consensus       160 ~~~~~l~s~s  169 (308)
                      |||++|+...
T Consensus       182 PDgk~iaf~~  191 (465)
T d1xfda1         182 PDGTRLAYAA  191 (465)
T ss_dssp             TTSSEEEEEE
T ss_pred             CCCCeEEEEE
Confidence            9999998765

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.04  E-value=0.0017  Score=51.45  Aligned_cols=207  Identities=12%  Similarity=0.082  Sum_probs=126.0

Q ss_pred             eEEec-CCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEe--e
Q 021744           72 KRFAN-NTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQL--E  147 (308)
Q Consensus        72 i~~s~-~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~--~  147 (308)
                      ..|.+ ++.+ .+=-..+.|.-||.++++..   .......+..+.+..++.++.++.+ .+.++|..+++ .....  .
T Consensus        23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~---~~~~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~-~~~l~~~~   97 (295)
T d2ghsa1          23 PTFDPASGTAWWFNILERELHELHLASGRKT---VHALPFMGSALAKISDSKQLIASDD-GLFLRDTATGV-LTLHAELE   97 (295)
T ss_dssp             EEEETTTTEEEEEEGGGTEEEEEETTTTEEE---EEECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCC-EEEEECSS
T ss_pred             CeEECCCCEEEEEECCCCEEEEEECCCCeEE---EEECCCCcEEEEEecCCCEEEEEeC-ccEEeecccce-eeEEeeee
Confidence            35554 4444 55556678888888776432   1112223566777788888777665 58889998873 32211  1


Q ss_pred             C--cccceEEEEEeCCCCEEEEeeC----CCcEEEEeCCCCeEEEEEeC-CC-eeEEEEcCCCEEEEE-c-CCcEEEEEc
Q 021744          148 G--HQKVVSGITLPSGSDKLYSGSK----DETVRVWDCASGQCAGVINL-GG-EVGCMISEGPWIFIG-V-TNFVKAWNT  217 (308)
Q Consensus       148 ~--h~~~v~~~~~~~~~~~l~s~s~----dg~v~~wd~~~~~~~~~~~~-~~-~v~~~~~~~~~l~~~-~-d~~i~~wd~  217 (308)
                      .  ....+..+.+.|+|++.++...    .+.-.+|.+..++....... .. .-.++.++++.+... + .+.|..|++
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~  177 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPL  177 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEB
T ss_pred             cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeee
Confidence            1  1235788999999987766543    23456676666765544441 11 222345777766644 4 678998887


Q ss_pred             CCCc------ee---eeeCCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE-EEe-cCC
Q 021744          218 QTNT------DL---SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA-HFS-RDV  284 (308)
Q Consensus       218 ~~~~------~~---~~~~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s-~d~  284 (308)
                      ....      ..   ...+.......+++..+  +.++.-..+.|..||-. +    +.+..+......+++ +|- +|.
T Consensus       178 d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G----~~~~~i~lP~~~~T~~~FGG~d~  252 (295)
T d2ghsa1         178 DARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G----NHIARYEVPGKQTTCPAFIGPDA  252 (295)
T ss_dssp             CTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C----CEEEEEECSCSBEEEEEEESTTS
T ss_pred             cccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-C----cEeeEecCCCCceEEEEEeCCCC
Confidence            5321      11   22234456788999888  44444466789999954 3    666666655455666 996 676


Q ss_pred             CeEE
Q 021744          285 TSLL  288 (308)
Q Consensus       285 ~~l~  288 (308)
                      +.|+
T Consensus       253 ~~Ly  256 (295)
T d2ghsa1         253 SRLL  256 (295)
T ss_dssp             CEEE
T ss_pred             CEEE
Confidence            6665

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=0.0026  Score=53.83  Aligned_cols=140  Identities=13%  Similarity=0.082  Sum_probs=73.3

Q ss_pred             ceEEEEEeCCCCEEEEeeC-C---CcEEEEeCCCCeEEEEEe--CCC------eeEEEEcCCCEEE---EEc-CC--cEE
Q 021744          152 VVSGITLPSGSDKLYSGSK-D---ETVRVWDCASGQCAGVIN--LGG------EVGCMISEGPWIF---IGV-TN--FVK  213 (308)
Q Consensus       152 ~v~~~~~~~~~~~l~s~s~-d---g~v~~wd~~~~~~~~~~~--~~~------~v~~~~~~~~~l~---~~~-d~--~i~  213 (308)
                      -+..+.|.++++.++.... +   ..+.++|..++++...+.  .+.      ....+.++++.++   ... ++  .+.
T Consensus       256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly  335 (465)
T d1xfda1         256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY  335 (465)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred             eeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceE
Confidence            3677889998876554332 2   258889999998766554  221      1224456776332   222 33  444


Q ss_pred             EEEcC-------CCceeeeeCCCCCEEEE-EEeCC---EEEEEcCCC--eEEEEEcCCCCc-ccccceeccccCCCeEE-
Q 021744          214 AWNTQ-------TNTDLSLSGPVGQVYAM-AVGND---LLFAGTQDG--AILAWKFNVTTN-CFEPAASLKVHTDSNRA-  278 (308)
Q Consensus       214 ~wd~~-------~~~~~~~~~~~~~v~~~-~~~~~---~l~~g~~dg--~i~iwd~~~~~~-~~~~~~~~~~~~~~v~~-  278 (308)
                      ..++.       ......+....-.|..+ .++++   +.+++..++  .-.+|.+..... ..+++..-......... 
T Consensus       336 ~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~  415 (465)
T d1xfda1         336 HITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSA  415 (465)
T ss_dssp             EEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEE
T ss_pred             EEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEE
Confidence            44432       11222444445566665 57776   444555442  334555442211 01222211122334445 


Q ss_pred             EEecCCCeEEEee
Q 021744          279 HFSRDVTSLLGSV  291 (308)
Q Consensus       279 ~~s~d~~~l~~s~  291 (308)
                      .|||++++++..+
T Consensus       416 ~~S~~~~y~v~~~  428 (465)
T d1xfda1         416 SFSHSMDFFLLKC  428 (465)
T ss_dssp             EECTTSSEEEEEC
T ss_pred             EECCCCCEEEEEe
Confidence            9999999998554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.81  E-value=0.0048  Score=49.20  Aligned_cols=185  Identities=9%  Similarity=-0.010  Sum_probs=107.2

Q ss_pred             eeeeecCCce-EEeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeC----CCcEEEEeCCCCeEEEE
Q 021744          113 LCRNWVQGNC-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK----DETVRVWDCASGQCAGV  187 (308)
Q Consensus       113 ~~~~~~~~~~-~~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~----dg~v~~wd~~~~~~~~~  187 (308)
                      ...|.++|++ ++....+.|+.|+..++ +....+.........++++++++++++...    .+.+...+.........
T Consensus        44 G~~~D~~G~Ly~~D~~~g~I~ri~p~g~-~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~  122 (319)
T d2dg1a1          44 GLNFDRQGQLFLLDVFEGNIFKINPETK-EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI  122 (319)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTC-CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE
T ss_pred             eCEECCCCCEEEEECCCCEEEEEECCCC-eEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeee
Confidence            4566677766 55567888988988876 444444445567889999999987776543    23455566665554444


Q ss_pred             EeCC---CeeEE--EEcCCCEEEEEcC-------CcEEEEEcCCCceeeeeCCCCCEEEEEEeCC---EEEEEcCCCeEE
Q 021744          188 INLG---GEVGC--MISEGPWIFIGVT-------NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAIL  252 (308)
Q Consensus       188 ~~~~---~~v~~--~~~~~~~l~~~~d-------~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~  252 (308)
                      ....   .....  +.++|++.++...       +.+..++........+...-...+.++|+|+   ++++-+..+.|.
T Consensus       123 ~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~  202 (319)
T d2dg1a1         123 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLH  202 (319)
T ss_dssp             ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred             ccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceE
Confidence            4321   12222  3477887665432       2355555554444433333345688999998   456667789999


Q ss_pred             EEEcCCCCcccccce-----eccccCCCeEE-EEecCCCeEEEee-ceEEEEee
Q 021744          253 AWKFNVTTNCFEPAA-----SLKVHTDSNRA-HFSRDVTSLLGSV-SFIMFIGQ  299 (308)
Q Consensus       253 iwd~~~~~~~~~~~~-----~~~~~~~~v~~-~~s~d~~~l~~s~-s~~i~~~~  299 (308)
                      .|++...........     ...... .... ++.++|.+.++.. ...|+...
T Consensus       203 ~~d~~~~g~~~~~~~~~~~~~~~~~~-~PdGl~vD~~G~l~Va~~~~g~V~~~~  255 (319)
T d2dg1a1         203 RIALEDDGVTIQPFGATIPYYFTGHE-GPDSCCIDSDDNLYVAMYGQGRVLVFN  255 (319)
T ss_dssp             EEEECTTSSSEEEEEEEEEEECCSSS-EEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             EEEEcCCCceeccccceeeeccCCcc-ceeeeeEcCCCCEEEEEcCCCEEEEEC
Confidence            999875321111111     111111 1233 7778887666543 34444444

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.24  E-value=0.027  Score=45.59  Aligned_cols=217  Identities=11%  Similarity=-0.009  Sum_probs=110.9

Q ss_pred             eeEEecCCCe-eeccCC-CcEEEEECCCCCCcccccceeeeeeeeeeeecCCce-EEeeCC------CeEEEEEcCCCce
Q 021744           71 AKRFANNTWG-RNNNFN-NHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC-MYGEKC------KFLHSWTVGDGFK  141 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d------~~i~iwd~~~~~~  141 (308)
                      ..++.++|.+ +.|+.+ .++.+||..+.................+...+++.+ +.|+.+      ..+.+||+.+.. 
T Consensus        80 ~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~-  158 (387)
T d1k3ia3          80 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT-  158 (387)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE-
T ss_pred             EEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc-
Confidence            4678899999 777655 689999997654332221111122334555667766 555532      468899988762 


Q ss_pred             eeeEeeC----------ccc-----ceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEe--CCC-----e---eEE
Q 021744          142 LLTQLEG----------HQK-----VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN--LGG-----E---VGC  196 (308)
Q Consensus       142 ~~~~~~~----------h~~-----~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~--~~~-----~---v~~  196 (308)
                      - ..+..          +..     .-..+...++++.++.+..+..+.+++..+......-.  ...     .   ...
T Consensus       159 W-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (387)
T d1k3ia3         159 W-TSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV  237 (387)
T ss_dssp             E-EEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred             e-eecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEE
Confidence            1 11110          100     01112233467777777777788888888765443322  010     0   111


Q ss_pred             E--EcCCCEEEEEc--C-------CcEEEEEcCCCc---ee-eee---CCCCCEEEEEEeCC--EEEEEcCCC-------
Q 021744          197 M--ISEGPWIFIGV--T-------NFVKAWNTQTNT---DL-SLS---GPVGQVYAMAVGND--LLFAGTQDG-------  249 (308)
Q Consensus       197 ~--~~~~~~l~~~~--d-------~~i~~wd~~~~~---~~-~~~---~~~~~v~~~~~~~~--~l~~g~~dg-------  249 (308)
                      +  ..++++++.|.  +       ....+.++....   .. ...   .....-.+....++  +++.|+.+.       
T Consensus       238 ~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~  317 (387)
T d1k3ia3         238 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS  317 (387)
T ss_dssp             EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred             EeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCC
Confidence            1  23566666653  1       123344433221   11 110   11111223444555  777777431       


Q ss_pred             ----eEEEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEEee
Q 021744          250 ----AILAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       250 ----~i~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                          .+.+||..+.+  ++.+..+......-.. ...+||+.++.++
T Consensus       318 ~~~~~ve~Ydp~~~~--W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG  362 (387)
T d1k3ia3         318 TPVFTPEIYVPEQDT--FYKQNPNSIVRVYHSISLLLPDGRVFNGGG  362 (387)
T ss_dssp             SBCCCCEEEEGGGTE--EEECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred             cEeceEEEEECCCCe--EEECCCCCCcccceEEEEECCCCEEEEEeC
Confidence                47889987754  2444333321111223 5678999888554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.08  E-value=0.0027  Score=49.08  Aligned_cols=92  Identities=7%  Similarity=0.050  Sum_probs=62.0

Q ss_pred             EEcC--CCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEc-CCC-----eEEEEEcCCCCcccccc
Q 021744          197 MISE--GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT-QDG-----AILAWKFNVTTNCFEPA  266 (308)
Q Consensus       197 ~~~~--~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~-~dg-----~i~iwd~~~~~~~~~~~  266 (308)
                      ++|+  |+.++-..++.|.+.|+.+++...+..+...+....||||  .||... .++     .|.+++...+..  ..+
T Consensus         6 ~sPdi~G~~v~f~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~--~~l   83 (281)
T d1k32a2           6 LNPDIHGDRIIFVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI--KRI   83 (281)
T ss_dssp             EEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE--EEC
T ss_pred             cCCCCCCCEEEEEeCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce--EEe
Confidence            4577  8888866778899999999998888888888999999999  555432 222     366777766532  222


Q ss_pred             eecc----ccCCCeEE-EEecCCCeEEEe
Q 021744          267 ASLK----VHTDSNRA-HFSRDVTSLLGS  290 (308)
Q Consensus       267 ~~~~----~~~~~v~~-~~s~d~~~l~~s  290 (308)
                      ....    ........ .|+|||+.|+.+
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             eecCCCccCccccccccccCCCCCEEEEE
Confidence            2111    11223455 899999988754

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.00  E-value=0.057  Score=43.17  Aligned_cols=169  Identities=8%  Similarity=-0.031  Sum_probs=82.2

Q ss_pred             eeEEecCCCe-eecc------------CCCcEEEEECCCCCCcccccceeeeeeeeeeeec---------CCce--EEe-
Q 021744           71 AKRFANNTWG-RNNN------------FNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWV---------QGNC--MYG-  125 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~--~~g-  125 (308)
                      .|+..|+|.. ++++            ..|.|.++|+.+.+.................|.|         ++..  ..- 
T Consensus        39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvn  118 (340)
T d1v04a_          39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN  118 (340)
T ss_dssp             EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred             eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEe
Confidence            6788898877 4332            1388999998765433222211111111112222         3322  111 


Q ss_pred             --eCCCeEEEEEcCCCce---eeeEeeC-cccceEEEEEeCCCCEEEEee--C-------------CCcEEEEeCCCCeE
Q 021744          126 --EKCKFLHSWTVGDGFK---LLTQLEG-HQKVVSGITLPSGSDKLYSGS--K-------------DETVRVWDCASGQC  184 (308)
Q Consensus       126 --~~d~~i~iwd~~~~~~---~~~~~~~-h~~~v~~~~~~~~~~~l~s~s--~-------------dg~v~~wd~~~~~~  184 (308)
                        ....+|.++++.....   .+.++.. ......++++..++..++|-.  .             -.+..+|....++.
T Consensus       119 H~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~  198 (340)
T d1v04a_         119 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV  198 (340)
T ss_dssp             CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE
T ss_pred             ccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce
Confidence              2345566666543311   1122221 123467888888888777721  1             12233333333333


Q ss_pred             EEEEe-CCCe-eEEEEcCCCEEEEEc--CCcEEEEEcCCCcee---eeeCCCCCEEEEEEeC
Q 021744          185 AGVIN-LGGE-VGCMISEGPWIFIGV--TNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGN  239 (308)
Q Consensus       185 ~~~~~-~~~~-v~~~~~~~~~l~~~~--d~~i~~wd~~~~~~~---~~~~~~~~v~~~~~~~  239 (308)
                      ..... ...+ -.++.+++++|+++.  .++|+.|++......   ....-....-.+.+.+
T Consensus       199 ~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~  260 (340)
T d1v04a_         199 RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDP  260 (340)
T ss_dssp             EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECT
T ss_pred             EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEec
Confidence            22222 1122 223457888888664  779999998755322   1222334455666654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.91  E-value=0.078  Score=43.36  Aligned_cols=219  Identities=11%  Similarity=-0.008  Sum_probs=118.4

Q ss_pred             eeEEe---cCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCC--ceEE-eeC---------------
Q 021744           71 AKRFA---NNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG--NCMY-GEK---------------  127 (308)
Q Consensus        71 ~i~~s---~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-g~~---------------  127 (308)
                      .+.+.   +||++  +.-..+..|.+-|+++.+...............++..+++  .+++ +++               
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            46664   48888  6666788899999977654322222111222223333222  2222 222               


Q ss_pred             ---CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCC--------------------------------
Q 021744          128 ---CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE--------------------------------  172 (308)
Q Consensus       128 ---d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg--------------------------------  172 (308)
                         .+.+.+.|..+. +...++.- .+....++++++|+++++.+.+.                                
T Consensus       169 ~~y~~~~t~ID~~tm-~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G  246 (459)
T d1fwxa2         169 ANYVNVFTAVDADKW-EVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  246 (459)
T ss_dssp             G-EEEEEEEEETTTT-EEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             hhcceEEEEEecCCc-eEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence               134667888887 55544442 24567889999999988776431                                


Q ss_pred             ------cEEEEeCCCC---eEEEEEe-CCCee-EEEEcCCCEEEEEc--CCcEEEEEcCCCcee------------eeeC
Q 021744          173 ------TVRVWDCASG---QCAGVIN-LGGEV-GCMISEGPWIFIGV--TNFVKAWNTQTNTDL------------SLSG  227 (308)
Q Consensus       173 ------~v~~wd~~~~---~~~~~~~-~~~~v-~~~~~~~~~l~~~~--d~~i~~wd~~~~~~~------------~~~~  227 (308)
                            -+.+-|.+..   ..+..+. ...+- ..++|||++++++.  +.++.++|+++....            ....
T Consensus       247 k~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e  326 (459)
T d1fwxa2         247 DYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  326 (459)
T ss_dssp             CSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred             CcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence                  1233333321   1111222 11111 23468999999765  899999999743211            1111


Q ss_pred             CCCCEEEEEEeCC-E-EEEEcCCCeEEEEEcCCC------Ccccccceecc-----ccCCCeEE-EEecCCCeEEEee
Q 021744          228 PVGQVYAMAVGND-L-LFAGTQDGAILAWKFNVT------TNCFEPAASLK-----VHTDSNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       228 ~~~~v~~~~~~~~-~-l~~g~~dg~i~iwd~~~~------~~~~~~~~~~~-----~~~~~v~~-~~s~d~~~l~~s~  291 (308)
                      ..-....-+|... . ..+---|..|.-|++...      ......+..+.     +|...... ...|||++|++-.
T Consensus       327 lglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         327 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             cCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence            1223455677777 3 344457899999998531      11012233333     33322223 4578999988755

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.77  E-value=0.054  Score=46.71  Aligned_cols=61  Identities=20%  Similarity=0.241  Sum_probs=45.6

Q ss_pred             CeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCC
Q 021744          129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG  191 (308)
Q Consensus       129 ~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~  191 (308)
                      |.+.-||+.++ +.+...+.. .+...=...-.+.+++.|+.|+.++.+|.++|+.+.++...
T Consensus       457 G~l~AiD~~tG-k~~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~  517 (573)
T d1kb0a2         457 GRLLAWDPVAQ-KAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (573)
T ss_dssp             EEEEEEETTTT-EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ccEEEeCCCCC-ceEeeecCC-CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECC
Confidence            67899999999 677666532 22222223335778889999999999999999999999844

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.56  E-value=0.11  Score=40.41  Aligned_cols=130  Identities=15%  Similarity=0.098  Sum_probs=86.2

Q ss_pred             EeeCCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCC-----CeeEEE-
Q 021744          124 YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-----GEVGCM-  197 (308)
Q Consensus       124 ~g~~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~-----~~v~~~-  197 (308)
                      +.-..+.|..||+.++. . ..+. ....+.++++.+++.++++ +.+ -+.++|..+++........     ...... 
T Consensus        35 vDi~~~~I~r~d~~~g~-~-~~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~  109 (295)
T d2ghsa1          35 FNILERELHELHLASGR-K-TVHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGR  109 (295)
T ss_dssp             EEGGGTEEEEEETTTTE-E-EEEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEE
T ss_pred             EECCCCEEEEEECCCCe-E-EEEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeE
Confidence            34466889999998883 2 2222 3457789999888876665 444 5899999988765444321     123333 


Q ss_pred             -EcCCCEEEEEc-----CCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC---EEEEEcCCCeEEEEEcCC
Q 021744          198 -ISEGPWIFIGV-----TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNV  258 (308)
Q Consensus       198 -~~~~~~l~~~~-----d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~---~l~~g~~dg~i~iwd~~~  258 (308)
                       .++|++.++..     .+.-.+|.+..++...+...-...+.++++++   ++++-+..+.|..|++..
T Consensus       110 vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~  179 (295)
T d2ghsa1         110 MHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA  179 (295)
T ss_dssp             ECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred             ECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecc
Confidence             46788777543     23456777777766544333445688999998   567778889999999864

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.15  E-value=0.33  Score=41.56  Aligned_cols=72  Identities=13%  Similarity=0.102  Sum_probs=44.3

Q ss_pred             CcEEEEEcCCCcee-eeeCCCCCEE--EEEEeCCEEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE--EEecCC
Q 021744          210 NFVKAWNTQTNTDL-SLSGPVGQVY--AMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA--HFSRDV  284 (308)
Q Consensus       210 ~~i~~wd~~~~~~~-~~~~~~~~v~--~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~--~~s~d~  284 (308)
                      |.|.-+|+++++.+ +... ..+..  .+.....++++|+.||.++.+|.+++    +.+-++.........  .|..||
T Consensus       444 G~l~AiD~~TG~~~W~~~~-~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tG----e~lW~~~l~~~~~a~P~ty~~dG  518 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDG----KELWNFKMPSGGIGSPMTYSFKG  518 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTC----CEEEEEECSSCCCSCCEEEEETT
T ss_pred             ccEEEeccCCCceeeEcCC-CCCCCcceeEecCCEEEEECCCCeEEEEECCCC----cEEEEEECCCCceecceEEEECC
Confidence            36778888888877 3221 11111  12233447778999999999999998    556555432222222  566788


Q ss_pred             Ce
Q 021744          285 TS  286 (308)
Q Consensus       285 ~~  286 (308)
                      +.
T Consensus       519 kq  520 (571)
T d2ad6a1         519 KQ  520 (571)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.09  E-value=0.11  Score=44.50  Aligned_cols=74  Identities=14%  Similarity=0.211  Sum_probs=46.3

Q ss_pred             CcEEEEEcCCCcee-eeeCCCCCEE--EEEEeCCEEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeE--EEEecCC
Q 021744          210 NFVKAWNTQTNTDL-SLSGPVGQVY--AMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNR--AHFSRDV  284 (308)
Q Consensus       210 ~~i~~wd~~~~~~~-~~~~~~~~v~--~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~--~~~s~d~  284 (308)
                      +.+.-||+.+++.+ .... ..+..  .++....++++|+.||.++.+|.+++    +.+-++........  ..|..||
T Consensus       438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tG----e~LW~~~l~~~~~~~P~ty~~dG  512 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKG----EALWQFEAQSGIVAAPMTFELAG  512 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTC----CEEEEEECSSCCCSCCEEEEETT
T ss_pred             cceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCC----cEeEEEECCCCccccCEEEEECC
Confidence            46788999999887 3221 11111  23334447788999999999999999    55555553222221  1566778


Q ss_pred             C-eEE
Q 021744          285 T-SLL  288 (308)
Q Consensus       285 ~-~l~  288 (308)
                      + |++
T Consensus       513 kqyv~  517 (560)
T d1kv9a2         513 RQYVA  517 (560)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            5 444

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.00  E-value=0.23  Score=38.43  Aligned_cols=116  Identities=11%  Similarity=0.067  Sum_probs=70.2

Q ss_pred             CcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEEcCCCceeeeeCCCCCEEEEEEeCC-EEEEEcCCCe
Q 021744          172 ETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGA  250 (308)
Q Consensus       172 g~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~  250 (308)
                      .+|.+-|+.+..............-+.|..+.|+.=...++.+||+++.+.+.-.....+|.--.|-.+ .|+..+. ..
T Consensus        45 ~~VvIidl~n~~~~~Rrpi~AdsAIMhP~~~IiALrag~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~-ta  123 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTD-NA  123 (327)
T ss_dssp             EEEEEEETTSTTSCEEEECCCSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEEECS-SE
T ss_pred             ceEEEEECCCCCcceecccchhhhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEEEcC-Cc
Confidence            467777777655443334444444455777777765566888999988877733333345555556544 6555554 37


Q ss_pred             EEEEEcCCCCcccccceeccccCC----CeEE-EEecCCCeEEEee
Q 021744          251 ILAWKFNVTTNCFEPAASLKVHTD----SNRA-HFSRDVTSLLGSV  291 (308)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~~~~~----~v~~-~~s~d~~~l~~s~  291 (308)
                      |+-|+++...   .+.+.+..|..    .|-. ..+++.++++..+
T Consensus       124 VYHW~~~g~s---~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~G  166 (327)
T d1utca2         124 VYHWSMEGES---QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTG  166 (327)
T ss_dssp             EEEEESSSSC---CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEE
T ss_pred             eEEEcccCCC---CchhhhhhcccccCceEEEEEECCCCCEEEEEe
Confidence            8889885432   45555554433    3333 7778888887443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.99  E-value=0.24  Score=40.46  Aligned_cols=123  Identities=10%  Similarity=0.056  Sum_probs=81.7

Q ss_pred             EEEeeCCCcEEEEeCCCCeEEEEEeC--C------------------------------------------CeeEEE---
Q 021744          165 LYSGSKDETVRVWDCASGQCAGVINL--G------------------------------------------GEVGCM---  197 (308)
Q Consensus       165 l~s~s~dg~v~~wd~~~~~~~~~~~~--~------------------------------------------~~v~~~---  197 (308)
                      +.||+..|.|+++-+.+.+.+..+..  .                                          .+-.+.   
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            67888999999999888888777640  0                                          001111   


Q ss_pred             EcCCCEEEEEc--CCcEEEEEcCCCceeee--eCCCCCEEEEEEeC--C--EEEEEcCCC------------------eE
Q 021744          198 ISEGPWIFIGV--TNFVKAWNTQTNTDLSL--SGPVGQVYAMAVGN--D--LLFAGTQDG------------------AI  251 (308)
Q Consensus       198 ~~~~~~l~~~~--d~~i~~wd~~~~~~~~~--~~~~~~v~~~~~~~--~--~l~~g~~dg------------------~i  251 (308)
                      ..||+++++..  +.+|.+.|+++.+...+  ......+..+...+  +  +++..+++.                  .+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence            13788999876  77999999999987522  22334566666654  3  888777643                  26


Q ss_pred             EEEEcCCCCcccccceeccccCCCeEEEEecCCCeEEEee
Q 021744          252 LAWKFNVTTNCFEPAASLKVHTDSNRAHFSRDVTSLLGSV  291 (308)
Q Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~s~d~~~l~~s~  291 (308)
                      .++|..+.    +....+......-...+++||+++++++
T Consensus       176 t~ID~~tm----~V~~QV~V~g~ld~~~~s~dGK~af~Ts  211 (459)
T d1fwxa2         176 TAVDADKW----EVAWQVLVSGNLDNCDADYEGKWAFSTS  211 (459)
T ss_dssp             EEEETTTT----EEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred             EEEecCCc----eEEEEeeeCCChhccccCCCCCEEEEEe
Confidence            67888875    4444444333444449999999998765

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.84  E-value=0.13  Score=44.30  Aligned_cols=77  Identities=13%  Similarity=0.049  Sum_probs=51.2

Q ss_pred             CCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeE----EEEcCCC
Q 021744          127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG----CMISEGP  202 (308)
Q Consensus       127 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~----~~~~~~~  202 (308)
                      ..|.|.-+|+.++ +.+.+... ..+..+-.+.-.+.+++.++.|+.++.+|.++|+.+.++.....+.    ....+|+
T Consensus       442 ~~G~l~AiD~~TG-~~~W~~~~-~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGk  519 (571)
T d2ad6a1         442 EMGQIRAFDLTTG-KAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK  519 (571)
T ss_dssp             CCEEEEEECTTTC-CEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CcccEEEeccCCC-ceeeEcCC-CCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCE
Confidence            4578999999999 66655442 2222221222246688889999999999999999999998544332    2234665


Q ss_pred             -EEE
Q 021744          203 -WIF  205 (308)
Q Consensus       203 -~l~  205 (308)
                       +++
T Consensus       520 qYi~  523 (571)
T d2ad6a1         520 QYIG  523 (571)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence             444

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.79  E-value=0.48  Score=40.40  Aligned_cols=52  Identities=15%  Similarity=0.298  Sum_probs=41.8

Q ss_pred             CcEEEEeCCCCeEEEEEeCCCeeE--EEEcCCCEEEEEc-CCcEEEEEcCCCcee
Q 021744          172 ETVRVWDCASGQCAGVINLGGEVG--CMISEGPWIFIGV-TNFVKAWNTQTNTDL  223 (308)
Q Consensus       172 g~v~~wd~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~-d~~i~~wd~~~~~~~  223 (308)
                      |.+.-||+.+++.+.++....+..  .+.-.+.++++|. |+.++.+|.++++.+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~L  492 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEe
Confidence            568889999999999888554432  3455677788777 999999999999998

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.78  E-value=0.5  Score=40.50  Aligned_cols=77  Identities=16%  Similarity=0.223  Sum_probs=53.6

Q ss_pred             CCCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCee----EEEEcCCC
Q 021744          127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV----GCMISEGP  202 (308)
Q Consensus       127 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v----~~~~~~~~  202 (308)
                      ..|.|.-+|+.++ +.+.+.+.+ .++..-.+...+.+++.|+.||.++.+|.++|+.+.+++.+..+    .....+|+
T Consensus       464 ~~G~l~AiD~~TG-~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~  541 (582)
T d1flga_         464 HVGSLRAMDPVSG-KVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             CSEEEEEECTTTC-CEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CCCeEEEEcCCCC-cEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            4578999999999 676666533 23332223345678888999999999999999999999844332    23346665


Q ss_pred             -EEE
Q 021744          203 -WIF  205 (308)
Q Consensus       203 -~l~  205 (308)
                       +++
T Consensus       542 qYv~  545 (582)
T d1flga_         542 QYLG  545 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence             444

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.68  E-value=0.26  Score=42.27  Aligned_cols=74  Identities=18%  Similarity=0.216  Sum_probs=46.1

Q ss_pred             cEEEEEcCCCcee-eeeCCCC-CEEEEEEeCCEEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE--EEecCCC-
Q 021744          211 FVKAWNTQTNTDL-SLSGPVG-QVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA--HFSRDVT-  285 (308)
Q Consensus       211 ~i~~wd~~~~~~~-~~~~~~~-~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~--~~s~d~~-  285 (308)
                      .+.-||+.+++.+ ....... .--.++....++++|+.||.++.+|.+++    +.+-++.........  .|..||+ 
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TG----e~LW~~~~~~~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG----EKLWEAPTGTGVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC----CEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCC----cEeEEEECCCCccccCEEEEECCEE
Confidence            5777888888887 3322111 11124444458888999999999999999    556555533322222  5666776 


Q ss_pred             eEE
Q 021744          286 SLL  288 (308)
Q Consensus       286 ~l~  288 (308)
                      |++
T Consensus       534 Yv~  536 (573)
T d1kb0a2         534 YVS  536 (573)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.32  E-value=0.32  Score=41.77  Aligned_cols=52  Identities=19%  Similarity=0.336  Sum_probs=38.3

Q ss_pred             CcEEEEeCCCCeEEEEEeCCCeeE--EEEcCCCEEEEEc-CCcEEEEEcCCCcee
Q 021744          172 ETVRVWDCASGQCAGVINLGGEVG--CMISEGPWIFIGV-TNFVKAWNTQTNTDL  223 (308)
Q Consensus       172 g~v~~wd~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~-d~~i~~wd~~~~~~~  223 (308)
                      |.+.-+|+.+++.+.+.....+..  .+...+.++++|+ |+.++.+|.++++++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~L  520 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEe
Confidence            567778888888888877444433  2345666777776 888999999998888

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.06  E-value=0.34  Score=41.67  Aligned_cols=62  Identities=15%  Similarity=0.186  Sum_probs=45.4

Q ss_pred             CCeEEEEEcCCCceeeeEeeCcccceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCC
Q 021744          128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG  191 (308)
Q Consensus       128 d~~i~iwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~  191 (308)
                      .|.|.-||+.++ +.+.... +..+...-.+...+.+++.|+.||.++.+|.++|+.+.++...
T Consensus       452 ~G~l~A~D~~TG-~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~  513 (596)
T d1w6sa_         452 LGQIKAYNAITG-DYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP  513 (596)
T ss_dssp             CEEEEEECTTTC-CEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cceEEEEeCCCC-ceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECC
Confidence            378999999999 5655543 2233332223335678888999999999999999999999844

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.75  E-value=0.69  Score=36.72  Aligned_cols=147  Identities=9%  Similarity=-0.051  Sum_probs=81.0

Q ss_pred             EecCCCe-eeccCCC-----------cEEEEECCCCCCcccccc--eeeeeeeeeeeecCCce-EEeeCC-CeEEEEEcC
Q 021744           74 FANNTWG-RNNNFNN-----------HSNNYRAGNSKNSNINNR--AVIKTDILCRNWVQGNC-MYGEKC-KFLHSWTVG  137 (308)
Q Consensus        74 ~s~~g~~-~s~~~d~-----------~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~g~~d-~~i~iwd~~  137 (308)
                      ...+|+. +.|+.+.           .+.+||..+++.......  .+........+.+++.. +.|+.+ ..+.+||..
T Consensus        27 ~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~  106 (387)
T d1k3ia3          27 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS  106 (387)
T ss_dssp             ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGG
T ss_pred             EeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCc
Confidence            3456666 6666421           367899987754322111  11111234456778877 555544 689999998


Q ss_pred             CCceeee--EeeCcccceEEEEEeCCCCEEEEeeCC------CcEEEEeCCCCeEEEEEeCC-----------------C
Q 021744          138 DGFKLLT--QLEGHQKVVSGITLPSGSDKLYSGSKD------ETVRVWDCASGQCAGVINLG-----------------G  192 (308)
Q Consensus       138 ~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~s~d------g~v~~wd~~~~~~~~~~~~~-----------------~  192 (308)
                      +.. -..  .+. ....-..++..++++.++.++.+      ..+.+||..+.+-...-...                 .
T Consensus       107 ~~~-w~~~~~~~-~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  184 (387)
T d1k3ia3         107 SDS-WIPGPDMQ-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNH  184 (387)
T ss_dssp             GTE-EEECCCCS-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCS
T ss_pred             cCc-cccccccc-ccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccce
Confidence            772 211  111 11223456777789988888753      36899999887543211100                 0


Q ss_pred             eeEEEEcCCCEEEEEc-CCcEEEEEcCCCce
Q 021744          193 EVGCMISEGPWIFIGV-TNFVKAWNTQTNTD  222 (308)
Q Consensus       193 ~v~~~~~~~~~l~~~~-d~~i~~wd~~~~~~  222 (308)
                      .......+++.+..+. ...+.++|..+...
T Consensus       185 ~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         185 AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             CCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             eEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence            0111124566665544 55667777766643

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.59  E-value=0.65  Score=35.15  Aligned_cols=167  Identities=8%  Similarity=-0.037  Sum_probs=93.5

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceE--E--eeCCCeEEEEEcCCCceeee
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCM--Y--GEKCKFLHSWTVGDGFKLLT  144 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--g~~d~~i~iwd~~~~~~~~~  144 (308)
                      .+++...+..  .+-...+.|.+.+++..... .........+..+...|....+  +  +.....|.--++... ....
T Consensus        83 ~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~-~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~-~~~~  160 (263)
T d1npea_          83 GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRI  160 (263)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEE
T ss_pred             EEEEeccCCeEEEeccCCCEEEEEecCCceEE-EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC-Ccee
Confidence            6888765554  67677788999998644321 1111111235566676665442  2  122334554555543 2222


Q ss_pred             EeeCcccceEEEEEeCCCCEEEEe-eCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEEEE-c-CCcEEEEEcCCCc
Q 021744          145 QLEGHQKVVSGITLPSGSDKLYSG-SKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIG-V-TNFVKAWNTQTNT  221 (308)
Q Consensus       145 ~~~~h~~~v~~~~~~~~~~~l~s~-s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~-~-d~~i~~wd~~~~~  221 (308)
                      .....-.....+++++.++.|.-+ ...+.|...|+........+........+...+..|... . .+.|...|..+++
T Consensus       161 i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~g~  240 (263)
T d1npea_         161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISK  240 (263)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTE
T ss_pred             eeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEECCEEEEEECCCCEEEEEECCCCc
Confidence            222233566899999887777544 567889999987554443444222223444445556544 3 6789999998887


Q ss_pred             eeeee--CCCCCEEEEEEeC
Q 021744          222 DLSLS--GPVGQVYAMAVGN  239 (308)
Q Consensus       222 ~~~~~--~~~~~v~~~~~~~  239 (308)
                      .....  ........+++.+
T Consensus       241 ~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         241 EMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             EEEEECCSSCCCCCCEEEEC
T ss_pred             cceEECCCCCCCcceEEEeC
Confidence            66322  2333444555543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.00  E-value=0.88  Score=34.37  Aligned_cols=187  Identities=6%  Similarity=-0.057  Sum_probs=108.8

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeec-CCce-EEeeCCCeEEEEEcCCCceeeeEe
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWV-QGNC-MYGEKCKFLHSWTVGDGFKLLTQL  146 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~g~~d~~i~iwd~~~~~~~~~~~  146 (308)
                      .++|.+..+.  .+-..++.|+..+++.......... ....+..+++.. .+.. .+....+.|.+.++... .....+
T Consensus        40 ~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~-~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~-~~~~l~  117 (263)
T d1npea_          40 GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ-DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT-QRRVLF  117 (263)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT-TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEE
T ss_pred             EEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe-ccccccEEEEeccCCeEEEeccCCCEEEEEecCCc-eEEEEe
Confidence            5788877666  5556678888888865433211111 112245555543 3333 55566789999998765 222223


Q ss_pred             eCcccceEEEEEeCCCCEEEEeeC-CCc--EEEEeCCCCeEEEEEeC-CCeeEEE--EcCCCEEEEE-c-CCcEEEEEcC
Q 021744          147 EGHQKVVSGITLPSGSDKLYSGSK-DET--VRVWDCASGQCAGVINL-GGEVGCM--ISEGPWIFIG-V-TNFVKAWNTQ  218 (308)
Q Consensus       147 ~~h~~~v~~~~~~~~~~~l~s~s~-dg~--v~~wd~~~~~~~~~~~~-~~~v~~~--~~~~~~l~~~-~-d~~i~~wd~~  218 (308)
                      ...-..+..++++|...++.-... .+.  |.--++........... -.....+  -+.++.|... . .+.|...|+.
T Consensus       118 ~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~  197 (263)
T d1npea_         118 DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA  197 (263)
T ss_dssp             CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECC
Confidence            333467889999997777654332 223  44445553332222221 1222333  3556666544 3 6789999987


Q ss_pred             CCceeeeeCCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCC
Q 021744          219 TNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       219 ~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~  259 (308)
                      ......+........+|++..+ ++.+-...+.|...|..++
T Consensus       198 g~~~~~v~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         198 QPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             EEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTT
T ss_pred             CCCeEEEECCCCCcEEEEEECCEEEEEECCCCEEEEEECCCC
Confidence            7655533222334578988877 5566667788999998876

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.73  E-value=0.77  Score=39.40  Aligned_cols=75  Identities=23%  Similarity=0.208  Sum_probs=45.1

Q ss_pred             CcEEEEEcCCCceeeeeCCCCCEEE--EEEeCCEEEEEcCCCeEEEEEcCCCCcccccceeccccCCCeEE--EEecCCC
Q 021744          210 NFVKAWNTQTNTDLSLSGPVGQVYA--MAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKVHTDSNRA--HFSRDVT  285 (308)
Q Consensus       210 ~~i~~wd~~~~~~~~~~~~~~~v~~--~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~v~~--~~s~d~~  285 (308)
                      |.|.-||+.+++......+..+..+  +.-..++++.|+.||.++.+|.+++    +.+-++.........  .|..||+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TG----e~LW~~~~~~~~~a~P~tY~~dGk  528 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTG----DLLWKFKIPSGAIGYPMTYTHKGT  528 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTC----CEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCC----cEeeEEECCCCcccCCeEEEECCE
Confidence            4677888888887621111222111  2222347778999999999999999    556555533222222  5666775


Q ss_pred             -eEE
Q 021744          286 -SLL  288 (308)
Q Consensus       286 -~l~  288 (308)
                       |++
T Consensus       529 QYva  532 (596)
T d1w6sa_         529 QYVA  532 (596)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence             454

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.61  E-value=1.2  Score=34.41  Aligned_cols=182  Identities=7%  Similarity=0.044  Sum_probs=109.3

Q ss_pred             eeEEecCCCe-eeccCCCcEEEEECCCCCCcccccceeeeeeeeeeeecCCceEEeeCCCeEEEEEcCCCceeeeEeeCc
Q 021744           71 AKRFANNTWG-RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGH  149 (308)
Q Consensus        71 ~i~~s~~g~~-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~h  149 (308)
                      +.-.+|..+. |.-+ ..+++++|+++.+.++..  .....+..-.|-.+..+ .--.+..|+-|+++...++.+.+.-|
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~--~~~e~VvfWkWis~~~L-~lVT~taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH--TMTDDVTFWKWISLNTV-ALVTDNAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEE--ECSSCCCEEEESSSSEE-EEECSSEEEEEESSSSCCCEEEEECC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceE--EcCCCcEEEEecCCCEE-EEEcCCceEEEcccCCCCchhhhhhc
Confidence            4567898888 5444 668999999877554221  11223444444444433 22235679999997654667777665


Q ss_pred             c----cceEEEEEeCCCCEEEEee---C----CCcEEEEeCCCCeEEEEEeCCCeeEEE---EcC-----CCEEEEE---
Q 021744          150 Q----KVVSGITLPSGSDKLYSGS---K----DETVRVWDCASGQCAGVINLGGEVGCM---ISE-----GPWIFIG---  207 (308)
Q Consensus       150 ~----~~v~~~~~~~~~~~l~s~s---~----dg~v~~wd~~~~~~~~~~~~~~~v~~~---~~~-----~~~l~~~---  207 (308)
                      .    ..|.....+++.++++..+   .    .|.+.+|..+.+.. +.+.  +...++   -.+     .++++.+   
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s-Q~ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~  219 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIE--GHAASFAQFKMEGNAEESTLFCFAVRG  219 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEEC--CSEEEEEEECCTTCSSCEEEEEEEEEE
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC-cccc--ceeeeeEEEEcCCCCCCceEEEEEECC
Confidence            4    3577777788888865433   2    35677888775432 2222  222332   111     1233322   


Q ss_pred             c-CCcEEEEEcCCCc----e-----eeee----CCCCCEEEEEEeCC--EEEEEcCCCeEEEEEcCCC
Q 021744          208 V-TNFVKAWNTQTNT----D-----LSLS----GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       208 ~-d~~i~~wd~~~~~----~-----~~~~----~~~~~v~~~~~~~~--~l~~g~~dg~i~iwd~~~~  259 (308)
                      . .+.+++.++....    .     ..+.    ...+-..++.+++.  .+..-+.-|.|++||+.++
T Consensus       220 ~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg  287 (327)
T d1utca2         220 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG  287 (327)
T ss_dssp             TTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC
T ss_pred             CCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccc
Confidence            2 3588999886531    1     1111    12345678889988  7777788999999999997

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.80  E-value=1.9  Score=32.41  Aligned_cols=188  Identities=7%  Similarity=-0.068  Sum_probs=108.0

Q ss_pred             eeEEecCCCe--eeccCCCcEEEEECCCCCCcccccc---eeeeeeeeeeeec-CCce-EEeeCCCeEEEEEcCCCceee
Q 021744           71 AKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNR---AVIKTDILCRNWV-QGNC-MYGEKCKFLHSWTVGDGFKLL  143 (308)
Q Consensus        71 ~i~~s~~g~~--~s~~~d~~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~-~~g~~d~~i~iwd~~~~~~~~  143 (308)
                      .++|.+..+.  .+=...+.|+--+++..........   .....+..+++-. .+.. .+-...+.|.+.++... ...
T Consensus        34 ~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~-~~~  112 (266)
T d1ijqa1          34 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRK  112 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS-SEE
T ss_pred             EEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCc-eEE
Confidence            6888887766  5555667777666643221111111   1111244455543 3333 55566788999998876 444


Q ss_pred             eEeeCcccceEEEEEeCCCCEEEEee--CCCcEEEEeCCCCeEEEEEeC-CCeeEEE--EcCCCEEEEE-c-CCcEEEEE
Q 021744          144 TQLEGHQKVVSGITLPSGSDKLYSGS--KDETVRVWDCASGQCAGVINL-GGEVGCM--ISEGPWIFIG-V-TNFVKAWN  216 (308)
Q Consensus       144 ~~~~~h~~~v~~~~~~~~~~~l~s~s--~dg~v~~wd~~~~~~~~~~~~-~~~v~~~--~~~~~~l~~~-~-d~~i~~wd  216 (308)
                      ..+.........++++|...+|.-..  ..+.|.-.++........... -.....+  .+.++.|..+ . .+.|...|
T Consensus       113 ~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~  192 (266)
T d1ijqa1         113 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID  192 (266)
T ss_dssp             EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEE
Confidence            44555556788999998665654433  344566667664433333322 1223333  3556666644 3 67899999


Q ss_pred             cCCCceee-ee--CCCCCEEEEEEeCC-EEEEEcCCCeEEEEEcCCC
Q 021744          217 TQTNTDLS-LS--GPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       217 ~~~~~~~~-~~--~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~  259 (308)
                      +....... ..  .......+|++..+ ++.+-..++.|...+..++
T Consensus       193 ~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         193 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             TTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             CCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECCCC
Confidence            87654432 22  22345778999888 5566567788888887776

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.78  E-value=1.1  Score=36.56  Aligned_cols=94  Identities=13%  Similarity=0.059  Sum_probs=49.6

Q ss_pred             EEEcCCCEEEEEc--CC----cEEEEEcCCCceeeeeCCCCCEEEEEEeCC--EEEEEcC----------------CCeE
Q 021744          196 CMISEGPWIFIGV--TN----FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ----------------DGAI  251 (308)
Q Consensus       196 ~~~~~~~~l~~~~--d~----~i~~wd~~~~~~~~~~~~~~~v~~~~~~~~--~l~~g~~----------------dg~i  251 (308)
                      +++|++++++.+.  .|    .|+++|+.+++.+...-.......++|.++  .|+-...                ...|
T Consensus       131 ~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v  210 (430)
T d1qfma1         131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKL  210 (430)
T ss_dssp             EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEE
T ss_pred             EecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceE
Confidence            3457777777432  22    678888888876621111111245778877  3332221                2257


Q ss_pred             EEEEcCCCCcccccceeccccCCCeEE-EEecCCCeEEE
Q 021744          252 LAWKFNVTTNCFEPAASLKVHTDSNRA-HFSRDVTSLLG  289 (308)
Q Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~v~~-~~s~d~~~l~~  289 (308)
                      ..+.+.+.......+..-......+.. ..++++++++.
T Consensus       211 ~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         211 YYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             EEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence            777777653311122222222334444 67888888864

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=88.25  E-value=3.5  Score=29.97  Aligned_cols=149  Identities=11%  Similarity=0.036  Sum_probs=78.8

Q ss_pred             ceEEEEEeCCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEEEcCCCEEE-EEc--CC--cEEEEEcCCCceeeee
Q 021744          152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIF-IGV--TN--FVKAWNTQTNTDLSLS  226 (308)
Q Consensus       152 ~v~~~~~~~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~~~~~~~l~-~~~--d~--~i~~wd~~~~~~~~~~  226 (308)
                      .|.+++.. +.+.+.+|+....+.+|-++.|+..+.-..+.--..---.+++++ .|-  .+  ...+=|+.++....+.
T Consensus       105 RI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~t  183 (313)
T d2hu7a1         105 RILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD  183 (313)
T ss_dssp             EEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEEC
T ss_pred             EEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEec
Confidence            45566554 456678888888899999988876554432221111112345554 221  22  3344466666666666


Q ss_pred             CCCCCEEEEEEeCC-EEEEEcC----CCeEEEEEcCCCCcccccc----eeccc-cCCCeEE-EEecCCCeEEEee-ceE
Q 021744          227 GPVGQVYAMAVGND-LLFAGTQ----DGAILAWKFNVTTNCFEPA----ASLKV-HTDSNRA-HFSRDVTSLLGSV-SFI  294 (308)
Q Consensus       227 ~~~~~v~~~~~~~~-~l~~g~~----dg~i~iwd~~~~~~~~~~~----~~~~~-~~~~v~~-~~s~d~~~l~~s~-s~~  294 (308)
                      ...+.++...+.+. .++++-+    ..-| -+|+++++-  +.+    +.+.. ....+.- -+.||+++++.+- +..
T Consensus       184 pkeGS~~~ay~~~gnKV~sdyEt~gEsywi-t~D~~s~~y--erve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~  260 (313)
T d2hu7a1         184 SGEGSFSSASISPGMKVTAGLETAREARLV-TVDPRDGSV--EDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGR  260 (313)
T ss_dssp             CSSEEEEEEEECTTSCEEEEEEESSCEEEE-EECTTTCCE--EECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTE
T ss_pred             CCCCcccceeEccCceeeeccCCCCceEEE-EEecccCce--eeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCc
Confidence            66677777777777 4443322    2223 447776431  111    11111 1122332 5889998866554 444


Q ss_pred             EEEeecCcee
Q 021744          295 MFIGQNNKGV  304 (308)
Q Consensus       295 i~~~~~~~~~  304 (308)
                      --+..|.+.+
T Consensus       261 s~lF~nGk~i  270 (313)
T d2hu7a1         261 SAVFIDGERV  270 (313)
T ss_dssp             EEEEETTEEE
T ss_pred             hheeecceEe
Confidence            4444455444

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=86.95  E-value=5.8  Score=31.12  Aligned_cols=138  Identities=13%  Similarity=0.195  Sum_probs=77.9

Q ss_pred             CCCCEEEEeeCCCcEEEEeCCCCeEEEEEeCCCeeEEE------EcCCC--EEEEEc---C--CcEEEEEcCC--Cceee
Q 021744          160 SGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM------ISEGP--WIFIGV---T--NFVKAWNTQT--NTDLS  224 (308)
Q Consensus       160 ~~~~~l~s~s~dg~v~~wd~~~~~~~~~~~~~~~v~~~------~~~~~--~l~~~~---d--~~i~~wd~~~--~~~~~  224 (308)
                      |+.++++.....+-|.+||+. |+.++.+... .+.-+      ...++  .+++++   +  .+|.+|.+..  .....
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~G-r~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHTG-KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCSS-CEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecccC-CcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            345677777777779999986 8877776533 22222      11222  244333   2  2677787642  22222


Q ss_pred             eeC-------CCCCEEEEEE--eCC----EEEEEcCCCeEEEEEcCCCC---cccccceeccccCCCeEEEEecCCCeEE
Q 021744          225 LSG-------PVGQVYAMAV--GND----LLFAGTQDGAILAWKFNVTT---NCFEPAASLKVHTDSNRAHFSRDVTSLL  288 (308)
Q Consensus       225 ~~~-------~~~~v~~~~~--~~~----~l~~g~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~v~~~~s~d~~~l~  288 (308)
                      +..       ....++.+|+  ++.    +++....+|.+..|.+....   ...++++++......--|.+.++...|.
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Ly  195 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLY  195 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEE
Confidence            221       1124566666  554    67777889999988874321   1234555555443333347777777666


Q ss_pred             Eee-ceEEEEee
Q 021744          289 GSV-SFIMFIGQ  299 (308)
Q Consensus       289 ~s~-s~~i~~~~  299 (308)
                      .+- ...+|...
T Consensus       196 isEE~~Giw~~~  207 (353)
T d1h6la_         196 IAEEDEAIWKFS  207 (353)
T ss_dssp             EEETTTEEEEEE
T ss_pred             EecCccceEEEE
Confidence            554 55666554

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.28  E-value=7.7  Score=28.63  Aligned_cols=99  Identities=12%  Similarity=0.107  Sum_probs=48.7

Q ss_pred             CCCEEEEeeCCCc-----EEEEeCCCCeEEEEEeCC---CeeEEEEcCCCEEEEEc------CCcEEEEEcCCCceeeee
Q 021744          161 GSDKLYSGSKDET-----VRVWDCASGQCAGVINLG---GEVGCMISEGPWIFIGV------TNFVKAWNTQTNTDLSLS  226 (308)
Q Consensus       161 ~~~~l~s~s~dg~-----v~~wd~~~~~~~~~~~~~---~~v~~~~~~~~~l~~~~------d~~i~~wd~~~~~~~~~~  226 (308)
                      +++.++.++.++.     ...+|..+......-...   ........++.+++.|.      ...+..||..+.+.....
T Consensus       101 ~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~  180 (288)
T d1zgka1         101 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT  180 (288)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECC
T ss_pred             ceeeEEecceecccccceeeeeccccCccccccccccccccceeeeeeecceEecCcccccccceEEEeecccccccccc
Confidence            4555555554443     444666665433221111   11122233455555543      236788998887655332


Q ss_pred             CC--CCCEEEEEEeCC-EEEEEcCC-----CeEEEEEcCCC
Q 021744          227 GP--VGQVYAMAVGND-LLFAGTQD-----GAILAWKFNVT  259 (308)
Q Consensus       227 ~~--~~~v~~~~~~~~-~l~~g~~d-----g~i~iwd~~~~  259 (308)
                      ..  .....++....+ +++.|+.+     ..+..+|..+.
T Consensus       181 ~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~  221 (288)
T d1zgka1         181 AMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE  221 (288)
T ss_dssp             CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             ccccccccccccceeeeEEEecCccccccccceeeeeecce
Confidence            21  122234445555 55565544     24677777764

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.78  E-value=8.9  Score=28.43  Aligned_cols=172  Identities=11%  Similarity=0.028  Sum_probs=98.1

Q ss_pred             CCcEEEEECCCCCCcccccceeeeeeeeeeeecCCce--EEeeCCCeEEEEEcCCCc---eeeeEeeCcccceEEEEEeC
Q 021744           86 NNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGF---KLLTQLEGHQKVVSGITLPS  160 (308)
Q Consensus        86 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~d~~i~iwd~~~~~---~~~~~~~~h~~~v~~~~~~~  160 (308)
                      ...|+-.++++.+..  ........+..+.|.+....  .+-...+.|+..++....   .....+......+..+++++
T Consensus         9 ~~~I~~~~l~~~~~~--~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~   86 (266)
T d1ijqa1           9 RHEVRKMTLDRSEYT--SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW   86 (266)
T ss_dssp             BSSEEEEETTSCCCE--EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred             CCeEEEEECCCCcce--eeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEee
Confidence            345887888655432  11122223556677665544  334456667766654321   11122222335567899987


Q ss_pred             CCCEEEE-eeCCCcEEEEeCCCCeEEEEEe-CCCeeEEE--EcCCCEEEEEc---CCcEEEEEcCCCceeeee-CCCCCE
Q 021744          161 GSDKLYS-GSKDETVRVWDCASGQCAGVIN-LGGEVGCM--ISEGPWIFIGV---TNFVKAWNTQTNTDLSLS-GPVGQV  232 (308)
Q Consensus       161 ~~~~l~s-~s~dg~v~~wd~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~---d~~i~~wd~~~~~~~~~~-~~~~~v  232 (308)
                      .+..|.- -...+.|.+.++........+. .......+  .+...+|+...   .+.|.-.++.......+. ..-...
T Consensus        87 ~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p  166 (266)
T d1ijqa1          87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP  166 (266)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCE
T ss_pred             ccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccccccee
Confidence            6666644 4566789999988665544444 22333333  45555655332   456777787766555433 333567


Q ss_pred             EEEEEeCC---EEEEEcCCCeEEEEEcCCC
Q 021744          233 YAMAVGND---LLFAGTQDGAILAWKFNVT  259 (308)
Q Consensus       233 ~~~~~~~~---~l~~g~~dg~i~iwd~~~~  259 (308)
                      ..+++.+.   +..+-...+.|...++...
T Consensus       167 ~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~  196 (266)
T d1ijqa1         167 NGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (266)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             eEEEeeccccEEEEecCCcCEEEEEECCCC
Confidence            89999876   4455566789999998764

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.58  E-value=12  Score=29.64  Aligned_cols=135  Identities=11%  Similarity=0.104  Sum_probs=82.5

Q ss_pred             cceEEEEEeCCCCEEEEeeCCCcEEEEeCC-----------CCeEEEEEeCCCeeEEEEcCCCEEEEEcCCcEEEEEcCC
Q 021744          151 KVVSGITLPSGSDKLYSGSKDETVRVWDCA-----------SGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQT  219 (308)
Q Consensus       151 ~~v~~~~~~~~~~~l~s~s~dg~v~~wd~~-----------~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~~wd~~~  219 (308)
                      ....-+++++...+++.|+.++ +.+-..+           ........... .+..+..++..+++..++.+..++...
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip-~v~~vafs~d~l~v~~~~~l~~~~~~~  114 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIP-DVIFVCFHGDQVLVSTRNALYSLDLEE  114 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECT-TEEEEEEETTEEEEEESSEEEEEESSS
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCC-CeEEEEeeCCEEEEEeCCCEEEEEeec
Confidence            3456788888777888888875 5555421           11111112222 344444455567777777888888776


Q ss_pred             Ccee-eeeCCCCCEEEEEEeCCEEEEEcCCCeEEEEEcCCCCcccccce----eccccCCCeEE-EEecCCCeEEEe
Q 021744          220 NTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAA----SLKVHTDSNRA-HFSRDVTSLLGS  290 (308)
Q Consensus       220 ~~~~-~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~v~~-~~s~d~~~l~~s  290 (308)
                      -... .......++.++...|..++....++.+.++++.....  ..+.    .+.. ...+.+ .|++.|..++++
T Consensus       115 l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~--~~~~~~v~~~~~-~~~~~~v~ws~kgkq~v~~  188 (381)
T d1xipa_         115 LSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKST--KQLAQNVTSFDV-TNSQLAVLLKDRSFQSFAW  188 (381)
T ss_dssp             TTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE--EEEEESEEEEEE-CSSEEEEEETTSCEEEEEE
T ss_pred             cccccccccccccccceecCCceeEEEecCCCEEEEEeccCcc--ccccCCcceEEe-cCCceEEEEeCCcEEEEEe
Confidence            4333 33344567899999999666677789999999988642  2221    1111 244566 888877777644