Citrus Sinensis ID: 021750
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 308 | 2.2.26 [Sep-21-2011] | |||||||
| O81004 | 300 | GTP-binding protein At2g2 | no | no | 0.746 | 0.766 | 0.598 | 1e-81 | |
| Q8A8T4 | 202 | Probable GTP-binding prot | yes | no | 0.626 | 0.955 | 0.449 | 2e-46 | |
| A6L4J3 | 200 | Probable GTP-binding prot | yes | no | 0.616 | 0.95 | 0.456 | 3e-46 | |
| A6LBY4 | 200 | Probable GTP-binding prot | yes | no | 0.633 | 0.975 | 0.44 | 1e-45 | |
| Q64UN4 | 201 | Probable GTP-binding prot | yes | no | 0.626 | 0.960 | 0.444 | 2e-45 | |
| Q5LDL2 | 201 | Probable GTP-binding prot | yes | no | 0.626 | 0.960 | 0.444 | 2e-45 | |
| A5FIZ1 | 210 | Probable GTP-binding prot | yes | no | 0.639 | 0.938 | 0.421 | 6e-45 | |
| A0M537 | 198 | Probable GTP-binding prot | yes | no | 0.629 | 0.979 | 0.427 | 3e-44 | |
| Q7MX68 | 201 | Probable GTP-binding prot | yes | no | 0.616 | 0.945 | 0.451 | 5e-42 | |
| B2RL89 | 201 | Probable GTP-binding prot | yes | no | 0.616 | 0.945 | 0.451 | 5e-42 |
| >sp|O81004|Y2287_ARATH GTP-binding protein At2g22870 OS=Arabidopsis thaliana GN=EMB2001 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 303 bits (775), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 143/239 (59%), Positives = 178/239 (74%), Gaps = 9/239 (3%)
Query: 69 LFVPPETEVS--IDDSSLSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDGLP 126
LF+PP E+ DD +L GSNIV+ +A +Q+ + EFVKSS R DCP D P
Sbjct: 67 LFIPPGVEIEELTDD-----MVLPGSNIVIGPFAGHSQIKEVEFVKSSARARDCPKDDRP 121
Query: 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAA 186
E A++GRSNVGKSSL+N LVR+K++ALTSK PGKTQ INHF +N SWY+VDLPGYG+A
Sbjct: 122 EIAILGRSNVGKSSLINCLVRKKEVALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKV 181
Query: 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKC 246
+TDW FTK YFLNR +LV V LLIDAS+P + IDL+ A+WLG+N +PMT VFTKC
Sbjct: 182 SDAAKTDWSAFTKGYFLNRDSLVCVLLLIDASVPPQKIDLDCANWLGRNNVPMTFVFTKC 241
Query: 247 DKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305
DK K K GKRP+EN+ FQ++I+ F+ PPWI+TSSV+ GRDE+LLHM+QLRNYW
Sbjct: 242 DKMKATK--GKRPDENIKAFQQIIRENFKVHPPWILTSSVSGLGRDELLLHMSQLRNYW 298
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8A8T4|ENGB_BACTN Probable GTP-binding protein EngB OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=engB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 127/198 (64%), Gaps = 5/198 (2%)
Query: 104 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC 163
++ AEFV S+ + CP+ PE+A +GRSNVGKSSL+N L RK LA+TS TPGKT
Sbjct: 2 EITSAEFVISNTDVKKCPTGVFPEYAFIGRSNVGKSSLINMLTARKGLAMTSATPGKTML 61
Query: 164 INHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP 223
INHF IN SWYLVDLPGYGYA ++ + +DY L R + ++F+LID+ + +
Sbjct: 62 INHFLINQSWYLVDLPGYGYARRGQKGKDQIRTIIEDYILEREQMTNLFVLIDSRLEPQK 121
Query: 224 IDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283
IDLE+ WLG+N IP +++FTK DK K G R + N+N++ + ++ PP+ ++
Sbjct: 122 IDLEFMEWLGENGIPFSIIFTKADKLK-----GGRLKMNINNYLRELSKEWEELPPYFIS 176
Query: 284 SSVTNQGRDEILLHMAQL 301
SS GR EIL ++ +
Sbjct: 177 SSENRTGRTEILDYIENI 194
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Necessary for normal cell division and for the maintenance of normal septation. Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) (taxid: 226186) |
| >sp|A6L4J3|ENGB_BACV8 Probable GTP-binding protein EngB OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=engB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (471), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 89/195 (45%), Positives = 128/195 (65%), Gaps = 5/195 (2%)
Query: 104 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC 163
++ AEFV S+ + E CP D LPE+A +GRSNVGKSSL+N L +R KLA+TS TPGKT
Sbjct: 2 EILSAEFVVSNTKVEKCPQDNLPEYAFIGRSNVGKSSLINMLAKRPKLAMTSSTPGKTLL 61
Query: 164 INHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP 223
INHF IN WYLVDLPGYGYA+ ++ + +DY L R + ++F+LID + +
Sbjct: 62 INHFLINKEWYLVDLPGYGYASRGKKQVEKIQQIIEDYILEREQMTNLFVLIDCRLEPQK 121
Query: 224 IDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283
IDLE+ WLG+N +P +++FTK DK NG + ++N+N + + + ++ PP ++
Sbjct: 122 IDLEFMEWLGENGVPFSIIFTKADKL---TNG--KVKDNVNKYLKKLTEQWEELPPHFVS 176
Query: 284 SSVTNQGRDEILLHM 298
SS GR EIL ++
Sbjct: 177 SSEKKTGRQEILDYI 191
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Necessary for normal cell division and for the maintenance of normal septation. Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) (taxid: 435590) |
| >sp|A6LBY4|ENGB_PARD8 Probable GTP-binding protein EngB OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=engB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (465), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 128/200 (64%), Gaps = 5/200 (2%)
Query: 104 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC 163
++ AEFV S+ CP PE+A +GRSNVGKSSL+N L +K LA+TS+TPGKT
Sbjct: 2 EIKSAEFVISNTDVRKCPEGNKPEYAFIGRSNVGKSSLINMLTNKKGLAMTSQTPGKTLL 61
Query: 164 INHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP 223
INHF IN+ WYLVDLPGYG+A +E R + ++Y L+R L ++F+L+D A+
Sbjct: 62 INHFLINNEWYLVDLPGYGFAQRGKENREQLKRIIENYILDREQLTNLFVLLDCRHEAQK 121
Query: 224 IDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283
IDLE+ WLG++ +P +++FTK DK K R +ENL + + + ++ PP ++
Sbjct: 122 IDLEFMEWLGESGVPFSIIFTKIDKISK-----GRLKENLKVYTDKLLETWEELPPIFLS 176
Query: 284 SSVTNQGRDEILLHMAQLRN 303
SS +GRDEIL ++ + N
Sbjct: 177 SSEKKEGRDEILDYIESINN 196
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Necessary for normal cell division and for the maintenance of normal septation. Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) (taxid: 435591) |
| >sp|Q64UN4|ENGB_BACFR Probable GTP-binding protein EngB OS=Bacteroides fragilis (strain YCH46) GN=engB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (464), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 127/198 (64%), Gaps = 5/198 (2%)
Query: 104 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC 163
++ AEFV S+ + CP+ PE+A +GRSNVGKSSL+N L RK LA+TS TPGKT
Sbjct: 2 EITNAEFVISNTDVKKCPAGTFPEYAFIGRSNVGKSSLINMLTGRKGLAMTSATPGKTML 61
Query: 164 INHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP 223
INHF IN+SWYLVDLPGYGYA ++ + +DY L R + ++F+LID+ + +
Sbjct: 62 INHFLINNSWYLVDLPGYGYARRGQKGQEQIRTIIEDYILEREQMTNLFVLIDSRLEPQK 121
Query: 224 IDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283
IDLE+ WLG+N IP ++FTK DK K G R + N++ + ++ ++ PP+ +T
Sbjct: 122 IDLEFMEWLGENGIPFAIIFTKADKLK-----GGRLKINISAYLRELRKQWEELPPYFIT 176
Query: 284 SSVTNQGRDEILLHMAQL 301
SS GR E+L ++ +
Sbjct: 177 SSEERLGRTEVLNYIESI 194
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Necessary for normal cell division and for the maintenance of normal septation. Bacteroides fragilis (strain YCH46) (taxid: 295405) |
| >sp|Q5LDL2|ENGB_BACFN Probable GTP-binding protein EngB OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=engB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (464), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 127/198 (64%), Gaps = 5/198 (2%)
Query: 104 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC 163
++ AEFV S+ + CP+ PE+A +GRSNVGKSSL+N L RK LA+TS TPGKT
Sbjct: 2 EITNAEFVISNTDVKKCPAGTFPEYAFIGRSNVGKSSLINMLTGRKGLAMTSATPGKTML 61
Query: 164 INHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP 223
INHF IN+SWYLVDLPGYGYA ++ + +DY L R + ++F+LID+ + +
Sbjct: 62 INHFLINNSWYLVDLPGYGYARRGQKGQKQIRTIIEDYILEREQMTNLFVLIDSRLEPQK 121
Query: 224 IDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283
IDLE+ WLG+N IP ++FTK DK K G R + N++ + ++ ++ PP+ +T
Sbjct: 122 IDLEFMEWLGENGIPFAIIFTKADKLK-----GGRLKINISAYLRELRKQWEELPPYFIT 176
Query: 284 SSVTNQGRDEILLHMAQL 301
SS GR E+L ++ +
Sbjct: 177 SSEERLGRTEVLNYIESI 194
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Necessary for normal cell division and for the maintenance of normal septation. Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) (taxid: 272559) |
| >sp|A5FIZ1|ENGB_FLAJ1 Probable GTP-binding protein EngB OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=engB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 181 bits (459), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 131/209 (62%), Gaps = 12/209 (5%)
Query: 104 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC 163
++ AEF+ S+ CP D LPE+A +GRSNVGKSSL+N + K LA TS PGKTQ
Sbjct: 2 KINTAEFIVSNSDAAKCPKDFLPEYAFIGRSNVGKSSLINMITNHKNLAKTSGKPGKTQL 61
Query: 164 INHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP 223
INHF+IN++W+LVDLPGYGYA ++ ++ + +F DYF NR LV F+LID A+
Sbjct: 62 INHFKINNNWFLVDLPGYGYAKVSKKTKSIFQQFITDYFENREQLVCAFVLIDIRHEAQK 121
Query: 224 IDLEYASWLGQNQIPMTLVFTKCDKRKKKK----NGGKRPEENLNDFQELIQGFFQTAPP 279
ID+E+ S++G+++IP ++FTK DK K K R + N++ E+ P
Sbjct: 122 IDIEFMSYMGESEIPFCIIFTKADKISKGKIDSHIAAYRKQMYANNWAEM--------PQ 173
Query: 280 WIMTSSVTNQGRDEILLHMAQLRNYWLKH 308
+ +TSS + G+DE+L ++ ++ K+
Sbjct: 174 YFVTSSTESIGKDELLTYIDEVNQEVFKN 202
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Necessary for normal cell division and for the maintenance of normal septation. Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) (taxid: 376686) |
| >sp|A0M537|ENGB_GRAFK Probable GTP-binding protein EngB OS=Gramella forsetii (strain KT0803) GN=engB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 132/201 (65%), Gaps = 7/201 (3%)
Query: 104 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC 163
++ AEFV S+ + + CP+ LPE+A +GRSNVGKSSL+N L RK LA TS PGKTQ
Sbjct: 2 KIKTAEFVISNSKVDHCPNSTLPEYAFIGRSNVGKSSLINMLTGRKSLAKTSAKPGKTQL 61
Query: 164 INHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP 223
INHF IN++W+LVDLPGYGYA + + + KF YF R ++ F+LID+ +P
Sbjct: 62 INHFLINNNWHLVDLPGYGYAQVSKSTKKVFQKFITAYFKKREQMICAFVLIDSRHKPQP 121
Query: 224 IDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQ-ELIQGFFQTAPPWIM 282
ID+E+ WLG++ IP ++FTK DK K K ++N+ +++ E+++ + + P + +
Sbjct: 122 IDMEFMQWLGEHNIPFCIIFTKADKLKP-----KILDKNIENYKNEMLESWVE-MPEYFI 175
Query: 283 TSSVTNQGRDEILLHMAQLRN 303
TS+ + G+D+IL ++ + N
Sbjct: 176 TSATSKLGQDDILDYIEGINN 196
|
Necessary for normal cell division and for the maintenance of normal septation. Gramella forsetii (strain KT0803) (taxid: 411154) |
| >sp|Q7MX68|ENGB_PORGI Probable GTP-binding protein EngB OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) GN=engB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (434), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 121/195 (62%), Gaps = 5/195 (2%)
Query: 104 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC 163
++ +A FV S+ CP LPE+A +GRSNVGKSSL+N L +K LA+TS+ PGKTQ
Sbjct: 2 EIKKAAFVISNTDVRKCPDTRLPEYAFIGRSNVGKSSLINMLTGQKGLAMTSQKPGKTQL 61
Query: 164 INHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP 223
INHF I+DSWYLVDLPGYGYA R + + Y L R L S+F+LID +
Sbjct: 62 INHFIIDDSWYLVDLPGYGYARLGASNRESLRRIIETYILCREQLSSLFVLIDCRHEPQK 121
Query: 224 IDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283
IDLE+ WLG+N IP ++VFTK DK R +EN +++ + ++ PP +T
Sbjct: 122 IDLEFLQWLGENGIPFSIVFTKADKL-----SFSRLKENTEAYKQKLLETWEELPPVFIT 176
Query: 284 SSVTNQGRDEILLHM 298
SS G++E+L ++
Sbjct: 177 SSEKKTGKEELLDYI 191
|
Necessary for normal cell division and for the maintenance of normal septation. Porphyromonas gingivalis (strain ATCC BAA-308 / W83) (taxid: 242619) |
| >sp|B2RL89|ENGB_PORG3 Probable GTP-binding protein EngB OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=engB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (434), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 121/195 (62%), Gaps = 5/195 (2%)
Query: 104 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC 163
++ +A FV S+ CP LPE+A +GRSNVGKSSL+N L +K LA+TS+ PGKTQ
Sbjct: 2 EIKKAAFVISNTDVRKCPDTRLPEYAFIGRSNVGKSSLINMLTGQKGLAMTSQKPGKTQL 61
Query: 164 INHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP 223
INHF I+DSWYLVDLPGYGYA R + + Y L R L S+F+LID +
Sbjct: 62 INHFIIDDSWYLVDLPGYGYARLGASNRESLRRIIETYILCREQLSSLFVLIDCRHEPQK 121
Query: 224 IDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283
IDLE+ WLG+N IP ++VFTK DK R +EN +++ + ++ PP +T
Sbjct: 122 IDLEFLQWLGENGIPFSIVFTKADKL-----SFSRLKENTEAYKQKLLETWEELPPVFIT 176
Query: 284 SSVTNQGRDEILLHM 298
SS G++E+L ++
Sbjct: 177 SSEKKTGKEELLDYI 191
|
Necessary for normal cell division and for the maintenance of normal septation. Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) (taxid: 431947) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 308 | ||||||
| 224089064 | 311 | predicted protein [Populus trichocarpa] | 0.987 | 0.977 | 0.768 | 1e-128 | |
| 224141797 | 316 | predicted protein [Populus trichocarpa] | 1.0 | 0.974 | 0.765 | 1e-127 | |
| 255551060 | 317 | GTP-binding protein engB, putative [Rici | 1.0 | 0.971 | 0.776 | 1e-126 | |
| 449509139 | 315 | PREDICTED: LOW QUALITY PROTEIN: GTP-bind | 0.977 | 0.955 | 0.729 | 1e-123 | |
| 297811265 | 318 | GTP binding protein [Arabidopsis lyrata | 1.0 | 0.968 | 0.757 | 1e-123 | |
| 15239069 | 318 | putative GTP-binding protein [Arabidopsi | 0.996 | 0.965 | 0.746 | 1e-122 | |
| 449437038 | 316 | PREDICTED: GTP-binding protein At2g22870 | 0.980 | 0.955 | 0.739 | 1e-121 | |
| 21592799 | 318 | putative GTP-binding protein [Arabidopsi | 0.996 | 0.965 | 0.742 | 1e-121 | |
| 225430037 | 307 | PREDICTED: GTP-binding protein At2g22870 | 0.983 | 0.986 | 0.769 | 1e-120 | |
| 356515571 | 293 | PREDICTED: GTP-binding protein At2g22870 | 0.840 | 0.883 | 0.822 | 1e-116 |
| >gi|224089064|ref|XP_002308620.1| predicted protein [Populus trichocarpa] gi|222854596|gb|EEE92143.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 242/315 (76%), Positives = 270/315 (85%), Gaps = 11/315 (3%)
Query: 1 MLFSQLPRLNFSIFVKPPLSLRSHFTLLPKHRLNFSA---LKSTLSTTEPIPISHA---V 54
M SQLP+ PP +H L +L LKSTL+TTEPIPI+ A +
Sbjct: 1 MALSQLPKFTHC----PPSLYNTHINLPLLTKLKLPTLTRLKSTLTTTEPIPITEAHNFL 56
Query: 55 EPEPEPHVAISLEKLFVPPETEVSIDDSS-LSTRILKGSNIVLSKYARDAQVAQAEFVKS 113
P+ E SL+KLF+PP+TEVSI+++S LS RILKGSNIVLSKYAR+AQV QAEF+KS
Sbjct: 57 TPQEETQTQFSLDKLFIPPDTEVSINENSGLSARILKGSNIVLSKYARNAQVVQAEFIKS 116
Query: 114 SVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSW 173
SVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSK PGKTQCINHF++NDSW
Sbjct: 117 SVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKKPGKTQCINHFKVNDSW 176
Query: 174 YLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG 233
YLVDLPGYGYA+AP+ELRTDW+KFTKDYFLNRSTLVSVFLLIDASIPAK IDLEYASWLG
Sbjct: 177 YLVDLPGYGYASAPQELRTDWNKFTKDYFLNRSTLVSVFLLIDASIPAKKIDLEYASWLG 236
Query: 234 QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDE 293
QNQ+PMT +FTKCDKRKKK+NGGKRPEEN+N+FQELI+GFF+TAPPWIMTS VTNQGRDE
Sbjct: 237 QNQVPMTFIFTKCDKRKKKRNGGKRPEENVNEFQELIRGFFETAPPWIMTSGVTNQGRDE 296
Query: 294 ILLHMAQLRNYWLKH 308
+LLHMAQLRNYWLKH
Sbjct: 297 MLLHMAQLRNYWLKH 311
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141797|ref|XP_002324249.1| predicted protein [Populus trichocarpa] gi|222865683|gb|EEF02814.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 242/316 (76%), Positives = 278/316 (87%), Gaps = 8/316 (2%)
Query: 1 MLFSQLPRLNFSIFVKPPLSLRSHFTL--LPKHRLN-FSALKSTLSTTEPIPISHA---V 54
M S+LP+L+FSIF P S +H L + K +L+ S LKST++TTEPIP + A +
Sbjct: 1 MALSRLPKLHFSIFTHPLPSPYTHINLPLITKLKLSTLSRLKSTVTTTEPIPFTEAHNLL 60
Query: 55 EPEPEPHVAISLEKLFVPPETEVSIDDSS--LSTRILKGSNIVLSKYARDAQVAQAEFVK 112
+ + SL+KLF+PP+TEVS++++S LS R+LKGSNIVLSKYARDAQ+ QAEF+K
Sbjct: 61 ALQEQTQTQFSLDKLFIPPDTEVSVNENSSGLSARVLKGSNIVLSKYARDAQIVQAEFIK 120
Query: 113 SSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDS 172
SSVRTEDCPSDGLPEFALVGRSNVGKSSLLNS+VRRKKLALTSK PGKTQCINHF++NDS
Sbjct: 121 SSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSIVRRKKLALTSKKPGKTQCINHFKVNDS 180
Query: 173 WYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWL 232
WYLVDLPGYGYA+AP+ELRTDW+KFTKDYFLNRSTLVSVFLLIDASIPAK IDLEYASWL
Sbjct: 181 WYLVDLPGYGYASAPQELRTDWNKFTKDYFLNRSTLVSVFLLIDASIPAKKIDLEYASWL 240
Query: 233 GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRD 292
GQNQ+PMTL+FTKCDKRKKKKNGGKRPEEN+N+FQELI+ FF+TAPPWIMTS VTNQGRD
Sbjct: 241 GQNQVPMTLIFTKCDKRKKKKNGGKRPEENVNEFQELIRDFFETAPPWIMTSGVTNQGRD 300
Query: 293 EILLHMAQLRNYWLKH 308
E+LLHMAQLRNYWLKH
Sbjct: 301 EMLLHMAQLRNYWLKH 316
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255551060|ref|XP_002516578.1| GTP-binding protein engB, putative [Ricinus communis] gi|223544398|gb|EEF45919.1| GTP-binding protein engB, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 246/317 (77%), Positives = 268/317 (84%), Gaps = 9/317 (2%)
Query: 1 MLFSQLPRLNFSIFVK----PPLSLRSHFTLLPKHRLNFSAL----KSTLSTTEPIPISH 52
M+ S L R ++ + P S + TL RLN + KSTLS EPIPISH
Sbjct: 1 MILSNLSRFHYLSIITHSKTPSPSPSALQTLTLFSRLNLPTIIKRPKSTLSPAEPIPISH 60
Query: 53 AVEPEPEPHVAISLEKLFVPPETEVSI-DDSSLSTRILKGSNIVLSKYARDAQVAQAEFV 111
E + +SL+KLFVPPETEV DD++LSTRILKGSNIVLSKYARDAQ+ QAEFV
Sbjct: 61 LSSQENNTQLPLSLDKLFVPPETEVLFTDDAALSTRILKGSNIVLSKYARDAQIGQAEFV 120
Query: 112 KSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND 171
KSSV TEDCP+DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSK PGKTQCINHFR+ND
Sbjct: 121 KSSVSTEDCPNDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKKPGKTQCINHFRVND 180
Query: 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASW 231
SWYLVDLPGYGYAAAP+ELRTDW+KFTKDYFLNRSTLVSVFLLIDASIPAK IDLEYASW
Sbjct: 181 SWYLVDLPGYGYAAAPQELRTDWNKFTKDYFLNRSTLVSVFLLIDASIPAKKIDLEYASW 240
Query: 232 LGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGR 291
LGQNQIPMTL+FTKCDKRKKKKNGGKRP+EN+NDFQELI+ FF+TAPPWIMTSS TNQGR
Sbjct: 241 LGQNQIPMTLIFTKCDKRKKKKNGGKRPDENVNDFQELIRSFFKTAPPWIMTSSTTNQGR 300
Query: 292 DEILLHMAQLRNYWLKH 308
DE+LLHMAQLRNYWLKH
Sbjct: 301 DEMLLHMAQLRNYWLKH 317
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449509139|ref|XP_004163505.1| PREDICTED: LOW QUALITY PROTEIN: GTP-binding protein At2g22870-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 235/322 (72%), Positives = 261/322 (81%), Gaps = 21/322 (6%)
Query: 1 MLFSQLPRLNFSIFVKPPLSLRSHFTLLPKHR--------------LNFSALKSTLSTTE 46
M+ S L R+N +F P + +F+L K F KSTL+ E
Sbjct: 1 MVLSHLSRINNFLFTSP---IHRNFSLFAKTNKPIIAATGAPILTSTPFPVPKSTLTAAE 57
Query: 47 PIPISHAVEPEPEPHVAISLEKLFVPPETEVSIDDSSLSTRILKGSNIVLSKYARDAQVA 106
PIPI+ E E + IS EKLFVPP+T++S RILKGSNIVL +YARDAQV+
Sbjct: 58 PIPITEFTEYPEETQLPISPEKLFVPPDTDIS---GGGXARILKGSNIVLGRYARDAQVS 114
Query: 107 QAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH 166
QA+FVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSK PGKTQCINH
Sbjct: 115 QADFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKKPGKTQCINH 174
Query: 167 FRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL 226
FRINDSWYLVDLPGYGYAAAP+ELRTDW+KFT+DYFLNRSTLVSVFLLIDASIPAKPIDL
Sbjct: 175 FRINDSWYLVDLPGYGYAAAPQELRTDWNKFTRDYFLNRSTLVSVFLLIDASIPAKPIDL 234
Query: 227 EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSV 286
+YASWLGQNQIPMT++FTKCDKRKKK+ GKRPEEN++DFQELI GFFQT PPWIMTSSV
Sbjct: 235 DYASWLGQNQIPMTIIFTKCDKRKKKRM-GKRPEENVSDFQELISGFFQTTPPWIMTSSV 293
Query: 287 TNQGRDEILLHMAQLRNYWLKH 308
T+QGRDEILLH+AQLRNYWLKH
Sbjct: 294 THQGRDEILLHIAQLRNYWLKH 315
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811265|ref|XP_002873516.1| GTP binding protein [Arabidopsis lyrata subsp. lyrata] gi|297319353|gb|EFH49775.1| GTP binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 241/318 (75%), Positives = 272/318 (85%), Gaps = 10/318 (3%)
Query: 1 MLFSQLPRLNFSIFVKPPLSLRS-HFTLL-PK-----HRLNFS-ALKSTLSTTEPIPISH 52
M+ +QLPR + SI KP +L S HF L PK R FS KS L+T EPIP+S
Sbjct: 1 MILAQLPRFHLSILAKPSFALSSSHFNFLNPKPSVEVARTLFSFTSKSNLATVEPIPLSV 60
Query: 53 AVEPEPEPH-VAISLEKLFVPPETEVSIDDS-SLSTRILKGSNIVLSKYARDAQVAQAEF 110
+ + + V ISL+KLF+PPET++S +DS SL+ RILKGSNIVLSKYARDAQV QA++
Sbjct: 61 SDSSDLDDAPVEISLDKLFIPPETDISGEDSTSLTARILKGSNIVLSKYARDAQVVQADY 120
Query: 111 VKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN 170
VKSSV+TEDCP+DGLPEFALVGRSNVGKSSLLNSLVRRK+LALTSK PGKTQCINHFRIN
Sbjct: 121 VKSSVKTEDCPADGLPEFALVGRSNVGKSSLLNSLVRRKRLALTSKKPGKTQCINHFRIN 180
Query: 171 DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYAS 230
D WYLVDLPGYGYA+AP EL+ DW+KFTKDYFLNRSTLVSVFLL+DASIP K IDLEYAS
Sbjct: 181 DKWYLVDLPGYGYASAPHELKQDWNKFTKDYFLNRSTLVSVFLLVDASIPVKQIDLEYAS 240
Query: 231 WLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQG 290
WLGQNQ+PMTL+FTKCDKRKKKKNGGK+PEEN+ +FQ+LIQGFF+T PPWIMTSSVTNQG
Sbjct: 241 WLGQNQVPMTLIFTKCDKRKKKKNGGKKPEENIKEFQDLIQGFFETTPPWIMTSSVTNQG 300
Query: 291 RDEILLHMAQLRNYWLKH 308
RDEILLHMAQLRNYWLKH
Sbjct: 301 RDEILLHMAQLRNYWLKH 318
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15239069|ref|NP_196709.1| putative GTP-binding protein [Arabidopsis thaliana] gi|7573405|emb|CAB87708.1| putative GTP-binding protein [Arabidopsis thaliana] gi|16648724|gb|AAL25554.1| AT5g11480/F15N18_70 [Arabidopsis thaliana] gi|23505999|gb|AAN28859.1| At5g11480/F15N18_70 [Arabidopsis thaliana] gi|332004301|gb|AED91684.1| putative GTP-binding protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 238/319 (74%), Positives = 270/319 (84%), Gaps = 12/319 (3%)
Query: 1 MLFSQLPRLNFSIFVKPPLSLRSHFTLL--PKHRLNFS------ALKSTLSTTEPIP--I 50
M+ + LPR + SI KP SL S PK + S A KS L+T EPIP +
Sbjct: 1 MILAHLPRFHLSILAKPSFSLSSSHFSFLNPKPSVTVSRTLFSFASKSNLATVEPIPLSV 60
Query: 51 SHAVEPEPEPHVAISLEKLFVPPETEVSIDDS-SLSTRILKGSNIVLSKYARDAQVAQAE 109
S + + + P V I+L+KLF+PPET++S +DS SL+TRILKGSNIVLSKYARDAQV QA+
Sbjct: 61 SDSTDLDDAP-VEIALDKLFIPPETDISGEDSASLTTRILKGSNIVLSKYARDAQVVQAD 119
Query: 110 FVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI 169
+VKSSV+TEDCP+DGLPEFALVGRSNVGKSSLLNSLVRRK+LALTSK PGKTQCINHFRI
Sbjct: 120 YVKSSVKTEDCPADGLPEFALVGRSNVGKSSLLNSLVRRKRLALTSKKPGKTQCINHFRI 179
Query: 170 NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYA 229
ND WYLVDLPGYGYA+AP EL+ DW+KFTKDYFLNRSTLVSVFLL+DASIP KPIDLEYA
Sbjct: 180 NDKWYLVDLPGYGYASAPHELKQDWNKFTKDYFLNRSTLVSVFLLVDASIPVKPIDLEYA 239
Query: 230 SWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQ 289
SWLGQNQ+PMTL+FTKCDKRKKKKNGGK+PE N+ +FQ+LIQGFF+T PPWIMTSSVTNQ
Sbjct: 240 SWLGQNQVPMTLIFTKCDKRKKKKNGGKKPEANIKEFQDLIQGFFETTPPWIMTSSVTNQ 299
Query: 290 GRDEILLHMAQLRNYWLKH 308
GRDEILLHMAQLRNYWLKH
Sbjct: 300 GRDEILLHMAQLRNYWLKH 318
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437038|ref|XP_004136299.1| PREDICTED: GTP-binding protein At2g22870-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 238/322 (73%), Positives = 263/322 (81%), Gaps = 20/322 (6%)
Query: 1 MLFSQLPRLNFSIFVKPPLSLRSHFTLLPKHR--------------LNFSALKSTLSTTE 46
M+ S L R+N +F P + +F+L K F KSTL+ E
Sbjct: 1 MVLSHLSRINNFLFTSP---IHRNFSLFAKTNKPIIAATGAPILTSTPFPVPKSTLTAAE 57
Query: 47 PIPISHAVEPEPEPHVAISLEKLFVPPETEVSIDDSSLSTRILKGSNIVLSKYARDAQVA 106
PIPI+ E E + IS EKLFVPP+T++S RILKGSNIVL +YARDAQV+
Sbjct: 58 PIPITEFTEYPEETQLPISPEKLFVPPDTDIS---GGGGARILKGSNIVLGRYARDAQVS 114
Query: 107 QAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH 166
QA+FVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSK PGKTQCINH
Sbjct: 115 QADFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKKPGKTQCINH 174
Query: 167 FRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL 226
FRINDSWYLVDLPGYGYAAAP+ELRTDW+KFT+DYFLNRSTLVSVFLLIDASIPAKPIDL
Sbjct: 175 FRINDSWYLVDLPGYGYAAAPQELRTDWNKFTRDYFLNRSTLVSVFLLIDASIPAKPIDL 234
Query: 227 EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSV 286
+YASWLGQNQIPMT++FTKCDKRKKKKNGGKRPEEN++DFQELI GFFQT PPWIMTSSV
Sbjct: 235 DYASWLGQNQIPMTIIFTKCDKRKKKKNGGKRPEENVSDFQELISGFFQTTPPWIMTSSV 294
Query: 287 TNQGRDEILLHMAQLRNYWLKH 308
T+QGRDEILLH+AQLRNYWLKH
Sbjct: 295 THQGRDEILLHIAQLRNYWLKH 316
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21592799|gb|AAM64748.1| putative GTP-binding protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 237/319 (74%), Positives = 269/319 (84%), Gaps = 12/319 (3%)
Query: 1 MLFSQLPRLNFSIFVKPPLSLRSHFTLL--PKHRLNFS------ALKSTLSTTEPIP--I 50
M+ + LPR + SI KP SL S PK + S A KS L+T EPIP +
Sbjct: 1 MILAHLPRFHLSILAKPSFSLSSSHFSFLNPKPSVTVSRTLFSFASKSNLATVEPIPLSV 60
Query: 51 SHAVEPEPEPHVAISLEKLFVPPETEVSIDDS-SLSTRILKGSNIVLSKYARDAQVAQAE 109
S + + + P I+L+KLF+PPET++S +DS SL+TRILKGSNIVLSKYARDAQV QA+
Sbjct: 61 SDSTDLDDAP-AEIALDKLFIPPETDISGEDSASLTTRILKGSNIVLSKYARDAQVVQAD 119
Query: 110 FVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI 169
+VKSSV+TEDCP+DGLPEFALVGRSNVGKSSLLNSLVRRK+LALTSK PGKTQCINHFRI
Sbjct: 120 YVKSSVKTEDCPADGLPEFALVGRSNVGKSSLLNSLVRRKRLALTSKKPGKTQCINHFRI 179
Query: 170 NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYA 229
ND WYLVDLPGYGYA+AP EL+ DW+KFTKDYFLNRSTLVSVFLL+DASIP KPIDLEYA
Sbjct: 180 NDKWYLVDLPGYGYASAPHELKQDWNKFTKDYFLNRSTLVSVFLLVDASIPVKPIDLEYA 239
Query: 230 SWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQ 289
SWLGQNQ+PMTL+FTKCDKRKKKKNGGK+PE N+ +FQ+LIQGFF+T PPWIMTSSVTNQ
Sbjct: 240 SWLGQNQVPMTLIFTKCDKRKKKKNGGKKPEANIKEFQDLIQGFFETTPPWIMTSSVTNQ 299
Query: 290 GRDEILLHMAQLRNYWLKH 308
GRDEILLHMAQLRNYWLKH
Sbjct: 300 GRDEILLHMAQLRNYWLKH 318
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430037|ref|XP_002284246.1| PREDICTED: GTP-binding protein At2g22870 [Vitis vinifera] gi|296081893|emb|CBI20898.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 240/312 (76%), Positives = 265/312 (84%), Gaps = 9/312 (2%)
Query: 1 MLFSQLPRLNFSIFVK-PPLSLRSHFTLL---PKHRLNFSALKSTLSTTEPIPISHAVEP 56
M+ + LP+L+ F+ PP SL +H L PK L +A +T STT P PIS
Sbjct: 1 MVVTHLPKLHTHFFISTPPPSLYTHHLSLLRIPKSTLTTAATAATSSTTHPPPIS----- 55
Query: 57 EPEPHVAISLEKLFVPPETEVSIDDSSLSTRILKGSNIVLSKYARDAQVAQAEFVKSSVR 116
P+ H+ I L+ LFVPPET++S + L+ RILKGSNIVLSKYA DAQV QAEFVKSSVR
Sbjct: 56 TPDTHIQIPLQNLFVPPETDISATSTPLTARILKGSNIVLSKYANDAQVVQAEFVKSSVR 115
Query: 117 TEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLV 176
TEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRK+LALTSK PGKTQCINHFRINDSWYLV
Sbjct: 116 TEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKRLALTSKKPGKTQCINHFRINDSWYLV 175
Query: 177 DLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ 236
DLPGYGYAAAP+ELRTDW+KFTKDYF +RSTLVSVFLL+DASIPAK IDLEYASWLG+NQ
Sbjct: 176 DLPGYGYAAAPQELRTDWNKFTKDYFQSRSTLVSVFLLVDASIPAKKIDLEYASWLGENQ 235
Query: 237 IPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILL 296
IPMTL+FTKCDKRKKKKNGGKRPEEN+ DFQ LI+ FFQTAPPWIMTSSV+NQGRDEILL
Sbjct: 236 IPMTLIFTKCDKRKKKKNGGKRPEENVEDFQGLIRDFFQTAPPWIMTSSVSNQGRDEILL 295
Query: 297 HMAQLRNYWLKH 308
HMAQLRNYWLKH
Sbjct: 296 HMAQLRNYWLKH 307
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515571|ref|XP_003526472.1| PREDICTED: GTP-binding protein At2g22870-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 222/270 (82%), Positives = 244/270 (90%), Gaps = 11/270 (4%)
Query: 39 KSTLSTTEPIPISHAVEPEPEPHVAISLEKLFVPPETEVSIDDSSLSTRILKGSNIVLSK 98
KSTL+T++P+ V P P +SLEKLFVPPET VS++ S+R+L GSNI+LS
Sbjct: 35 KSTLTTSQPL----TVNPSP---TELSLEKLFVPPETTVSLE----SSRVLNGSNILLSN 83
Query: 99 YARDAQVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTP 158
YA DAQV QAEFVKSSV+TEDCPSDG+PEFALVGRSNVGKSSLLNSLVRRKKLALTSK P
Sbjct: 84 YANDAQVLQAEFVKSSVKTEDCPSDGIPEFALVGRSNVGKSSLLNSLVRRKKLALTSKKP 143
Query: 159 GKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS 218
GKTQCINHFRIN+SWYLVDLPGYGYA+AP ELR DW+KFTKDYFLNRSTLVSVFLLIDAS
Sbjct: 144 GKTQCINHFRINNSWYLVDLPGYGYASAPHELRMDWEKFTKDYFLNRSTLVSVFLLIDAS 203
Query: 219 IPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278
IPAK IDL+YASWLGQNQIPMTL+FTKCDKRKKKKNGGKRPE+N+NDFQ+LI+GFFQ+ P
Sbjct: 204 IPAKQIDLDYASWLGQNQIPMTLIFTKCDKRKKKKNGGKRPEDNVNDFQDLIRGFFQSVP 263
Query: 279 PWIMTSSVTNQGRDEILLHMAQLRNYWLKH 308
PWIMTSSVTNQGRDEILLHMAQLRNYWLKH
Sbjct: 264 PWIMTSSVTNQGRDEILLHMAQLRNYWLKH 293
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 308 | ||||||
| TAIR|locus:2144271 | 318 | AT5G11480 [Arabidopsis thalian | 0.996 | 0.965 | 0.730 | 1.4e-119 | |
| TAIR|locus:2059221 | 300 | EMB2001 "embryo defective 2001 | 0.905 | 0.93 | 0.512 | 2e-72 | |
| UNIPROTKB|Q748I9 | 206 | engB "Probable GTP-binding pro | 0.461 | 0.689 | 0.5 | 1.4e-30 | |
| TIGR_CMR|GSU_3013 | 206 | GSU_3013 "GTP-binding protein" | 0.461 | 0.689 | 0.5 | 1.4e-30 | |
| UNIPROTKB|Q2GGM7 | 200 | engB "Probable GTP-binding pro | 0.613 | 0.945 | 0.390 | 5e-28 | |
| TIGR_CMR|ECH_0595 | 200 | ECH_0595 "GTP-binding protein | 0.613 | 0.945 | 0.390 | 5e-28 | |
| UNIPROTKB|P38424 | 195 | engB "Probable GTP-binding pro | 0.587 | 0.928 | 0.364 | 9.4e-27 | |
| UNIPROTKB|P0A6P7 | 210 | yihA "cell division protein; p | 0.587 | 0.861 | 0.375 | 2.5e-26 | |
| UNIPROTKB|Q83AV6 | 205 | engB "Probable GTP-binding pro | 0.610 | 0.917 | 0.345 | 1.1e-25 | |
| TIGR_CMR|CBU_1772 | 205 | CBU_1772 "small GTP-binding pr | 0.610 | 0.917 | 0.345 | 1.1e-25 |
| TAIR|locus:2144271 AT5G11480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1177 (419.4 bits), Expect = 1.4e-119, P = 1.4e-119
Identities = 233/319 (73%), Positives = 264/319 (82%)
Query: 1 MLFSQLPRLNFSIFVKPPLSLRS-HFTLL-PK-----HRLNFS-ALKSTLSTTEPIP--I 50
M+ + LPR + SI KP SL S HF+ L PK R FS A KS L+T EPIP +
Sbjct: 1 MILAHLPRFHLSILAKPSFSLSSSHFSFLNPKPSVTVSRTLFSFASKSNLATVEPIPLSV 60
Query: 51 SHAVEPEPEPHVAISLEKLFVPPETEVSIDDS-SLSTRILKGSNIVLSKYARDAQVAQAE 109
S + + + P V I+L+KLF+PPET++S +DS SL+TRILKGSNIVLSKYARDAQV QA+
Sbjct: 61 SDSTDLDDAP-VEIALDKLFIPPETDISGEDSASLTTRILKGSNIVLSKYARDAQVVQAD 119
Query: 110 FVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI 169
+VKSSV+TEDCP+DGLPEFALVGRSNVGKSSLLNSLVRRK+LALTSK PGKTQCINHFRI
Sbjct: 120 YVKSSVKTEDCPADGLPEFALVGRSNVGKSSLLNSLVRRKRLALTSKKPGKTQCINHFRI 179
Query: 170 NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYA 229
ND WYLVDLPGYGYA+AP EL+ DW+KFTKDYFLNRSTLVSVFLL+DASIP KPIDLEYA
Sbjct: 180 NDKWYLVDLPGYGYASAPHELKQDWNKFTKDYFLNRSTLVSVFLLVDASIPVKPIDLEYA 239
Query: 230 SWLGQNQIPMTLVFTKCDXXXXXXXXXXXPEENLNDFQELIQGFFQTAPPWIMTSSVTNQ 289
SWLGQNQ+PMTL+FTKCD PE N+ +FQ+LIQGFF+T PPWIMTSSVTNQ
Sbjct: 240 SWLGQNQVPMTLIFTKCDKRKKKKNGGKKPEANIKEFQDLIQGFFETTPPWIMTSSVTNQ 299
Query: 290 GRDEILLHMAQLRNYWLKH 308
GRDEILLHMAQLRNYWLKH
Sbjct: 300 GRDEILLHMAQLRNYWLKH 318
|
|
| TAIR|locus:2059221 EMB2001 "embryo defective 2001" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
Identities = 148/289 (51%), Positives = 192/289 (66%)
Query: 18 PLSLRSHFTLLPKHRLNFSAL-KSTLSTTEPIPISHAVEPEPEPHVAISLEKLFVPPETE 76
P S + H TL NF ++ K + ST P ++ + A S+ LF+PP E
Sbjct: 19 PKSQKFH-TLQSFRNPNFISIPKISASTNNPTTTTNRSISDATKF-AKSV--LFIPPGVE 74
Query: 77 VSIDDSSLSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNV 136
+ + +L GSNIV+ +A +Q+ + EFVKSS R DCP D PE A++GRSNV
Sbjct: 75 I---EELTDDMVLPGSNIVIGPFAGHSQIKEVEFVKSSARARDCPKDDRPEIAILGRSNV 131
Query: 137 GKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDK 196
GKSSL+N LVR+K++ALTSK PGKTQ INHF +N SWY+VDLPGYG+A +TDW
Sbjct: 132 GKSSLINCLVRKKEVALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKVSDAAKTDWSA 191
Query: 197 FTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDXXXXXXXXX 256
FTK YFLNR +LV V LLIDAS+P + IDL+ A+WLG+N +PMT VFTKCD
Sbjct: 192 FTKGYFLNRDSLVCVLLLIDASVPPQKIDLDCANWLGRNNVPMTFVFTKCDKMKATKGKR 251
Query: 257 XXPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305
P+EN+ FQ++I+ F+ PPWI+TSSV+ GRDE+LLHM+QLRNYW
Sbjct: 252 --PDENIKAFQQIIRENFKVHPPWILTSSVSGLGRDELLLHMSQLRNYW 298
|
|
| UNIPROTKB|Q748I9 engB "Probable GTP-binding protein EngB" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 72/144 (50%), Positives = 85/144 (59%)
Query: 105 VAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI 164
+ AEFV S R E P L E A VGRSNVGKSSL+N LV RK L TS TPG+TQ I
Sbjct: 4 ITSAEFVTSGTRPEHYPPGDLLEIAFVGRSNVGKSSLINVLVNRKSLVRTSSTPGRTQLI 63
Query: 165 NHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS-IPAKP 223
N FR+N S LVDLPGYG+A P E++ W + Y RS L V L++D PA+
Sbjct: 64 NFFRVNGSLMLVDLPGYGFARVPPEVKRQWGPMVETYLAGRSCLACVVLIVDVRRTPAEE 123
Query: 224 IDLEYASWLGQNQIPMTLVFTKCD 247
D WL IP+ +V TKCD
Sbjct: 124 -DRLMLQWLRAYDIPVLVVITKCD 146
|
|
| TIGR_CMR|GSU_3013 GSU_3013 "GTP-binding protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 72/144 (50%), Positives = 85/144 (59%)
Query: 105 VAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI 164
+ AEFV S R E P L E A VGRSNVGKSSL+N LV RK L TS TPG+TQ I
Sbjct: 4 ITSAEFVTSGTRPEHYPPGDLLEIAFVGRSNVGKSSLINVLVNRKSLVRTSSTPGRTQLI 63
Query: 165 NHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS-IPAKP 223
N FR+N S LVDLPGYG+A P E++ W + Y RS L V L++D PA+
Sbjct: 64 NFFRVNGSLMLVDLPGYGFARVPPEVKRQWGPMVETYLAGRSCLACVVLIVDVRRTPAEE 123
Query: 224 IDLEYASWLGQNQIPMTLVFTKCD 247
D WL IP+ +V TKCD
Sbjct: 124 -DRLMLQWLRAYDIPVLVVITKCD 146
|
|
| UNIPROTKB|Q2GGM7 engB "Probable GTP-binding protein EngB" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 77/197 (39%), Positives = 108/197 (54%)
Query: 105 VAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI 164
+++ EF+ + + P +PE A+ GRSNVGKSSL+N++ KK A TS PG T+ I
Sbjct: 7 MSKCEFMIGATHIKSLPDFSIPEIAIAGRSNVGKSSLINAITNNKKNAKTSSKPGCTKQI 66
Query: 165 NHFRIN-DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP 223
N + IN D LVDLPGYGY+ A + ++ + Y LN L+ V LLIDA + K
Sbjct: 67 NFYLINKDFMVLVDLPGYGYSKADKTTINNYLCLMEYYLLNSRNLLKVILLIDAKVGFKE 126
Query: 224 IDLEYASWLGQNQIPMTLVFTKCDXXXXXXXXXXXPEENLNDFQELIQGFFQTAPPWIMT 283
IDL++ +WL +QI LV TK D + N+N + L F P I T
Sbjct: 127 IDLDFINWLELHQIHYQLVLTKIDKIKKEML-----DVNVNYIKNLNLDFIMY--PIIST 179
Query: 284 SSVTNQGRDEILLHMAQ 300
SS QG +E++ +AQ
Sbjct: 180 SSQCKQGIEELIYEIAQ 196
|
|
| TIGR_CMR|ECH_0595 ECH_0595 "GTP-binding protein EngB" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 77/197 (39%), Positives = 108/197 (54%)
Query: 105 VAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI 164
+++ EF+ + + P +PE A+ GRSNVGKSSL+N++ KK A TS PG T+ I
Sbjct: 7 MSKCEFMIGATHIKSLPDFSIPEIAIAGRSNVGKSSLINAITNNKKNAKTSSKPGCTKQI 66
Query: 165 NHFRIN-DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP 223
N + IN D LVDLPGYGY+ A + ++ + Y LN L+ V LLIDA + K
Sbjct: 67 NFYLINKDFMVLVDLPGYGYSKADKTTINNYLCLMEYYLLNSRNLLKVILLIDAKVGFKE 126
Query: 224 IDLEYASWLGQNQIPMTLVFTKCDXXXXXXXXXXXPEENLNDFQELIQGFFQTAPPWIMT 283
IDL++ +WL +QI LV TK D + N+N + L F P I T
Sbjct: 127 IDLDFINWLELHQIHYQLVLTKIDKIKKEML-----DVNVNYIKNLNLDFIMY--PIIST 179
Query: 284 SSVTNQGRDEILLHMAQ 300
SS QG +E++ +AQ
Sbjct: 180 SSQCKQGIEELIYEIAQ 196
|
|
| UNIPROTKB|P38424 engB "Probable GTP-binding protein EngB" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] | Back alignment and assigned GO terms |
|---|
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 70/192 (36%), Positives = 103/192 (53%)
Query: 104 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC 163
+V ++E V S+V+ E P GLPE AL GRSNVGKSS +NSL+ RK LA TS PGKTQ
Sbjct: 2 KVTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQT 61
Query: 164 INHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP 223
+N + IND + VD+PGYG+A + R W + + Y R L +V ++D
Sbjct: 62 LNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSN 121
Query: 224 IDLEYASWLGQNQIPMTLVFTKCDXXXXXXXXXXXPEENLNDFQELIQGFFQTAPP--WI 281
D++ +L IP+ ++ TK D P+ + ++++ P I
Sbjct: 122 DDVQMYEFLKYYGIPVIVIATKADKI---------PKGKWDKHAKVVRQTLNIDPEDELI 172
Query: 282 MTSSVTNQGRDE 293
+ SS T +G+DE
Sbjct: 173 LFSSETKKGKDE 184
|
|
| UNIPROTKB|P0A6P7 yihA "cell division protein; predicted checkpoint GTPase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 71/189 (37%), Positives = 97/189 (51%)
Query: 107 QAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH 166
Q FV S+ PSD E A GRSN GKSS LN+L +K LA TSKTPG+TQ IN
Sbjct: 8 QTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67
Query: 167 FRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL 226
F + D LVDLPGYGYA P E++ W + +Y R +L + +L+D P K +D
Sbjct: 68 FEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ 127
Query: 227 EYASWLGQNQIPMTLVFTKCDXXXXXXXXXXXPEENLNDFQELIQGFFQTAPPWIMT-SS 285
+ W + I + ++ TK D + LN +E + F + T SS
Sbjct: 128 QMIEWAVDSNIAVLVLLTKADKLASGAR-----KAQLNMVREAVLAF--NGDVQVETFSS 180
Query: 286 VTNQGRDEI 294
+ QG D++
Sbjct: 181 LKKQGVDKL 189
|
|
| UNIPROTKB|Q83AV6 engB "Probable GTP-binding protein EngB" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 67/194 (34%), Positives = 100/194 (51%)
Query: 107 QAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH 166
+A+++ S+ + P D E A +GRSN GKSS LN + K LA TSKTPG+TQ IN
Sbjct: 12 EAKYLTSAAEFDQLPPDQGAEIAFIGRSNAGKSSALNIITGIKGLARTSKTPGRTQMINF 71
Query: 167 FRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL 226
F +N+ LVDLPGYGYA PR ++ W++ Y NR L + +++D P K +D
Sbjct: 72 FALNEHERLVDLPGYGYAKVPRMVQKRWEELVDSYLKNRRCLKGLVVVMDIRHPLKEMDE 131
Query: 227 EYASWLGQNQIPMTLVFTKCDXXXXXXXXXXXPEENLNDFQELIQGFFQTAPPWIMTSSV 286
+ W IP+ ++ TK D ++ L + Q I + + + SS
Sbjct: 132 DVIEWAVNYDIPIHILLTKSDKLSQNAA-----KKTLGEVQTAISAYGEKLTLQLF-SSH 185
Query: 287 TNQGRDEILLHMAQ 300
G DE+ ++Q
Sbjct: 186 DRTGLDEVKAVLSQ 199
|
|
| TIGR_CMR|CBU_1772 CBU_1772 "small GTP-binding protein domain protein, putative" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 67/194 (34%), Positives = 100/194 (51%)
Query: 107 QAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH 166
+A+++ S+ + P D E A +GRSN GKSS LN + K LA TSKTPG+TQ IN
Sbjct: 12 EAKYLTSAAEFDQLPPDQGAEIAFIGRSNAGKSSALNIITGIKGLARTSKTPGRTQMINF 71
Query: 167 FRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL 226
F +N+ LVDLPGYGYA PR ++ W++ Y NR L + +++D P K +D
Sbjct: 72 FALNEHERLVDLPGYGYAKVPRMVQKRWEELVDSYLKNRRCLKGLVVVMDIRHPLKEMDE 131
Query: 227 EYASWLGQNQIPMTLVFTKCDXXXXXXXXXXXPEENLNDFQELIQGFFQTAPPWIMTSSV 286
+ W IP+ ++ TK D ++ L + Q I + + + SS
Sbjct: 132 DVIEWAVNYDIPIHILLTKSDKLSQNAA-----KKTLGEVQTAISAYGEKLTLQLF-SSH 185
Query: 287 TNQGRDEILLHMAQ 300
G DE+ ++Q
Sbjct: 186 DRTGLDEVKAVLSQ 199
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 308 | |||
| PRK00454 | 196 | PRK00454, engB, GTP-binding protein YsxC; Reviewed | 7e-80 | |
| cd01876 | 170 | cd01876, YihA_EngB, YihA (EngB) GTPase family | 1e-73 | |
| TIGR03598 | 178 | TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-bi | 3e-73 | |
| COG0218 | 200 | COG0218, COG0218, Predicted GTPase [General functi | 8e-67 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 9e-22 | |
| cd00880 | 161 | cd00880, Era_like, E | 2e-18 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 2e-18 | |
| PRK04213 | 201 | PRK04213, PRK04213, GTP-binding protein; Provision | 2e-13 | |
| cd04163 | 168 | cd04163, Era, E | 6e-13 | |
| cd01894 | 157 | cd01894, EngA1, EngA1 GTPase contains the first do | 1e-11 | |
| COG1161 | 322 | COG1161, COG1161, Predicted GTPases [General funct | 6e-11 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 1e-10 | |
| PRK00089 | 292 | PRK00089, era, GTPase Era; Reviewed | 3e-10 | |
| cd01857 | 140 | cd01857, HSR1_MMR1, A circularly permuted subfamil | 1e-09 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 5e-09 | |
| COG3596 | 296 | COG3596, COG3596, Predicted GTPase [General functi | 6e-09 | |
| cd04164 | 159 | cd04164, trmE, trmE is a tRNA modification GTPase | 6e-09 | |
| cd01856 | 171 | cd01856, YlqF, Circularly permuted YlqF GTPase | 8e-09 | |
| cd01895 | 174 | cd01895, EngA2, EngA2 GTPase contains the second d | 2e-08 | |
| PRK00093 | 435 | PRK00093, PRK00093, GTP-binding protein Der; Revie | 2e-08 | |
| PRK05291 | 449 | PRK05291, trmE, tRNA modification GTPase TrmE; Rev | 1e-07 | |
| cd01855 | 191 | cd01855, YqeH, Circularly permuted YqeH GTPase | 3e-07 | |
| cd01859 | 157 | cd01859, MJ1464, An uncharacterized, circularly pe | 3e-07 | |
| TIGR03918 | 391 | TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster | 5e-07 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 9e-07 | |
| COG0486 | 454 | COG0486, ThdF, Predicted GTPase [General function | 2e-06 | |
| cd04178 | 171 | cd04178, Nucleostemin_like, A circularly permuted | 5e-06 | |
| TIGR03597 | 360 | TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase | 6e-06 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 8e-06 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 1e-05 | |
| COG1159 | 298 | COG1159, Era, GTPase [General function prediction | 1e-05 | |
| PRK09518 | 712 | PRK09518, PRK09518, bifunctional cytidylate kinase | 1e-05 | |
| cd11383 | 140 | cd11383, YfjP, YfjP GTPase | 5e-05 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 5e-05 | |
| TIGR03596 | 276 | TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi | 6e-05 | |
| PRK00093 | 435 | PRK00093, PRK00093, GTP-binding protein Der; Revie | 8e-05 | |
| cd01898 | 170 | cd01898, Obg, Obg GTPase | 2e-04 | |
| cd01849 | 146 | cd01849, YlqF_related_GTPase, Circularly permuted | 2e-04 | |
| cd01858 | 157 | cd01858, NGP_1, A novel nucleolar GTP-binding prot | 3e-04 | |
| PRK03003 | 472 | PRK03003, PRK03003, GTP-binding protein Der; Revie | 5e-04 | |
| PRK03003 | 472 | PRK03003, PRK03003, GTP-binding protein Der; Revie | 8e-04 | |
| cd01879 | 159 | cd01879, FeoB, Ferrous iron transport protein B (F | 8e-04 | |
| cd00881 | 183 | cd00881, GTP_translation_factor, GTP translation f | 0.001 | |
| PRK09563 | 287 | PRK09563, rbgA, GTPase YlqF; Reviewed | 0.001 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 0.002 | |
| TIGR00450 | 442 | TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas | 0.003 | |
| cd01878 | 204 | cd01878, HflX, HflX GTPase family | 0.003 | |
| cd09912 | 180 | cd09912, DLP_2, Dynamin-like protein including dyn | 0.003 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 0.003 |
| >gnl|CDD|234770 PRK00454, engB, GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 7e-80
Identities = 85/195 (43%), Positives = 113/195 (57%), Gaps = 8/195 (4%)
Query: 107 QAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH 166
AEFV S+ + E P D PE A GRSNVGKSSL+N+L RK LA TSKTPG+TQ IN
Sbjct: 6 NAEFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINF 65
Query: 167 FRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL 226
F +ND LVDLPGYGYA +E + W K ++Y R L V LLID+ P K +DL
Sbjct: 66 FEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL 125
Query: 227 EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSV 286
+ WL + IP+ +V TK DK KK + ++ L ++ ++ I+ SS+
Sbjct: 126 QMIEWLKEYGIPVLIVLTKADKLKKGER-----KKQLKKVRKALKFGDDEV---ILFSSL 177
Query: 287 TNQGRDEILLHMAQL 301
QG DE+ +A+
Sbjct: 178 KKQGIDELRAAIAKW 192
|
Length = 196 |
| >gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family | Back alignment and domain information |
|---|
Score = 223 bits (571), Expect = 1e-73
Identities = 82/175 (46%), Positives = 102/175 (58%), Gaps = 6/175 (3%)
Query: 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAA 186
E A GRSNVGKSSL+N+L RKKLA TSKTPG+TQ IN F + D + LVDLPGYGYA
Sbjct: 1 EVAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFNVGDKFRLVDLPGYGYAKV 60
Query: 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKC 246
+E+R W K ++Y NR L V LLIDA PIDLE +L + IP +V TK
Sbjct: 61 SKEVREKWGKLIEEYLENRENLKGVVLLIDARHGPTPIDLEMLEFLEELGIPFLIVLTKA 120
Query: 247 DKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301
DK KK + + L +E + F PP I+ SS G DE+ +A+
Sbjct: 121 DKLKKSEL-----AKVLKKIKEELNL-FNILPPVILFSSKKGTGIDELRALIAEW 169
|
The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170 |
| >gnl|CDD|213835 TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 3e-73
Identities = 83/185 (44%), Positives = 108/185 (58%), Gaps = 7/185 (3%)
Query: 108 AEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHF 167
AEFVKS+V+ + P D PE A GRSNVGKSSL+N+L RKKLA TSKTPG+TQ IN F
Sbjct: 1 AEFVKSAVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFF 60
Query: 168 RINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLE 227
+ND + LVDLPGYGYA +E + W K ++Y R L V LL+D P K +DLE
Sbjct: 61 EVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE 120
Query: 228 YASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVT 287
WL + IP+ +V TK DK KK + + L ++ ++ + SS+
Sbjct: 121 MIEWLRERGIPVLIVLTKADKLKK----SEL-NKQLKKIKKALKKDA--DDSVQLFSSLK 173
Query: 288 NQGRD 292
G D
Sbjct: 174 KTGID 178
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes [Protein synthesis, Other]. Length = 178 |
| >gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 207 bits (529), Expect = 8e-67
Identities = 81/189 (42%), Positives = 112/189 (59%), Gaps = 5/189 (2%)
Query: 107 QAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH 166
+A+F+ S+ + P D LPE A GRSNVGKSSL+N+L +K LA TSKTPG+TQ IN
Sbjct: 6 KAKFITSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINF 65
Query: 167 FRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL 226
F ++D LVDLPGYGYA P+E++ W K ++Y R+ L V LLIDA P K +D
Sbjct: 66 FEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR 125
Query: 227 EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSV 286
E +L + IP+ +V TK DK KK + + LN E ++ ++ SS+
Sbjct: 126 EMIEFLLELGIPVIVVLTKADKLKKSER-----NKQLNKVAEELKKPPPDDQWVVLFSSL 180
Query: 287 TNQGRDEIL 295
+G DE+
Sbjct: 181 KKKGIDELK 189
|
Length = 200 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 9e-22
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 8/120 (6%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRINDSWYLVDLPGYGYAAA 186
ALVGR NVGKS+L+N+L K+A+ S PG T+ + LVD PG
Sbjct: 3 ALVGRPNVGKSTLINALT-GAKVAIVSDYPGTTRDPILGVLGLGRQIILVDTPGLI---- 57
Query: 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-NQIPMTLVFTK 245
+ + + L++DAS D E L + + P+ LV K
Sbjct: 58 EGASEGKGVEGFNRFLEAIREADLILLVVDASEGLTEDDEEILEELEKLPKKPIILVLNK 117
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-18
Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 25/179 (13%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN----HFRINDSWYLVDLPGYGYA 184
A+ GR NVGKSSLLN+L+ + + + S PG T+ L+D PG
Sbjct: 1 AIFGRPNVGKSSLLNALL-GQNVGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEE 59
Query: 185 AAPRELRTD--WDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLV 242
R + +R+ L V L++D+ + + + L + P+ LV
Sbjct: 60 GGLGRERVEEARQV------ADRADL--VLLVVDSDLTPVEEEAKL-GLLRERGKPVLLV 110
Query: 243 FTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301
K D E +E P I S++ +G DE+ +A+L
Sbjct: 111 LNKIDLVP--------ESEEEELLRERKLELLPDLPV-IAVSALPGEGIDELRKKIAEL 160
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 2e-18
Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 25/179 (13%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRINDSWY---LVDLPGYGY 183
+VGR VGKSSLLN+L+ ++ S PG T+ + ++ LVD PG
Sbjct: 1 VVVGRGGVGKSSLLNALL-GGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDE 59
Query: 184 AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA--KPIDLEYASWLGQNQIPMTL 241
L + L + L++D++ + L L + IP+ L
Sbjct: 60 FGGLGREELARL------LLRGADL--ILLVVDSTDRESEEDAKLLILRRLRKEGIPIIL 111
Query: 242 VFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
V K D E + + L + P S+ T +G DE+ + +
Sbjct: 112 VGNKID---------LLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-13
Identities = 52/169 (30%), Positives = 76/169 (44%), Gaps = 29/169 (17%)
Query: 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGY-A 184
PE VGRSNVGKS+L+ L +K K PG T+ NH+ D + L DLPG+G+ +
Sbjct: 10 PEIVFVGRSNVGKSTLVRELTGKK--VRVGKRPGVTRKPNHYDWGD-FILTDLPGFGFMS 66
Query: 185 AAPRELRTDWDKFTKDYFLN--RSTLVSVFLLIDA-SIP----------AKPIDLEYASW 231
P+E++ Y + L +V L++D S PID+E +
Sbjct: 67 GVPKEVQEKIKDEIVRYIEDNADRILAAV-LVVDGKSFIEIIERWEGRGEIPIDVEMFDF 125
Query: 232 LGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW 280
L + IP + K DK K + +E L++ E PPW
Sbjct: 126 LRELGIPPIVAVNKMDKIKNR-------DEVLDEIAE----RLGLYPPW 163
|
Length = 201 |
| >gnl|CDD|206726 cd04163, Era, E | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 6e-13
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 34/184 (18%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWY---LVDLPGYGYAA 185
A++GR NVGKS+LLN+LV +K+++ S P T+ D VD PG
Sbjct: 7 AIIGRPNVGKSTLLNALV-GQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGI---H 62
Query: 186 APRELRTDWDKFTKDYFLNRSTLVS------VFLLIDASIPAKPIDLEYASWLGQNQIPM 239
P++ + ++ + V ++DAS D L +++ P+
Sbjct: 63 KPKKK--------LGERMVKAAWSALKDVDLVLFVVDASEWIGEGDEFILELLKKSKTPV 114
Query: 240 TLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW--IMTSSVTNQGRDEILLH 297
LV K D K K+ D L++ + P S++ + DE+L +
Sbjct: 115 ILVLNKIDLVKDKE-----------DLLPLLEKLKELHPFAEIFPISALKGENVDELLEY 163
Query: 298 MAQL 301
+ +
Sbjct: 164 IVEY 167
|
coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168 |
| >gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 1e-11
Identities = 39/156 (25%), Positives = 61/156 (39%), Gaps = 35/156 (22%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAA 185
A+VGR NVGKS+L N L R+ A+ S TPG T+ + L+D G
Sbjct: 1 AIVGRPNVGKSTLFNRLTGRRD-AIVSDTPGVTRDRKYGEAEWGGREFILIDTGG----- 54
Query: 186 APRELRTDWDKFTKDYF--LNRSTLVS------VFLLIDASIPAKPIDLEYASWLGQNQI 237
+ + + ++ + ++D P D E A +L +++
Sbjct: 55 --------IEPDDEGISKEIREQAEIAIEEADVILFVVDGREGLTPADEEIAKYLRKSKK 106
Query: 238 PMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273
P+ LV K D + EE +F L GF
Sbjct: 107 PVILVVNKID--------NIKEEEEAAEFYSL--GF 132
|
This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157 |
| >gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 6e-11
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGY 181
+VG NVGKS+L+N L+ +K A TS PG T+ I +++D YL+D PG
Sbjct: 137 VVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDGIYLLDTPGI 187
|
Length = 322 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 1e-10
Identities = 50/192 (26%), Positives = 74/192 (38%), Gaps = 48/192 (25%)
Query: 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWY-----LVDLP 179
P A+VGR NVGKS+L N L R ++A+ S TPG T+ + W L+D
Sbjct: 3 TPVVAIVGRPNVGKSTLFNRLTGR-RIAIVSDTPGVTRDRIYGDAE--WLGREFILIDTG 59
Query: 180 GYGYAAAPRELRTDWDKFTKDYFLNR---STLVS------VFLLIDASIPAKPIDLEYAS 230
G D +D L++ + ++D P D E A
Sbjct: 60 G-------------LDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAK 106
Query: 231 WLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQG 290
L +++ P+ LV K D K EE +F L GF P + S+ +G
Sbjct: 107 ILRRSKKPVILVVNKIDNLK--------AEELAYEFYSL--GF---GEP-VPISAEHGRG 152
Query: 291 ----RDEILLHM 298
D +L +
Sbjct: 153 IGDLLDAVLELL 164
|
Length = 444 |
| >gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 3e-10
Identities = 47/184 (25%), Positives = 72/184 (39%), Gaps = 46/184 (25%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT----QCINHFRINDSWY-LVDLPGYGY 183
A+VGR NVGKS+LLN+LV +K+++ S P T + I +D+ VD PG
Sbjct: 9 AIVGRPNVGKSTLLNALV-GQKISIVSPKPQTTRHRIRGIVT--EDDAQIIFVDTPGI-- 63
Query: 184 AAAPRELRTDWDKFTKDYFLNR-------STLVSV---FLLIDASIPAKPIDLEYASWLG 233
LNR S+L V ++DA P D L
Sbjct: 64 -------------HKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLK 110
Query: 234 QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW--IMTSSVTNQGR 291
+ + P+ LV K D K K+ + L++ + + S++
Sbjct: 111 KVKTPVILVLNKIDLVKDKE-----------ELLPLLEELSELMDFAEIVPISALKGDNV 159
Query: 292 DEIL 295
DE+L
Sbjct: 160 DELL 163
|
Length = 292 |
| >gnl|CDD|206750 cd01857, HSR1_MMR1, A circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-09
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPG 180
LVG NVGKSSL+N+LV KK++ S TPGKT+ + L D PG
Sbjct: 87 LVGYPNVGKSSLINALVGSKKVS-VSSTPGKTKHFQTIFLEPGITLCDCPG 136
|
Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus. Length = 140 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 5e-09
Identities = 43/156 (27%), Positives = 64/156 (41%), Gaps = 35/156 (22%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWY-----LVDLPGYGY 183
A+VGR NVGKS+L N L ++ A+ S TPG T+ + W L+D G
Sbjct: 3 AIVGRPNVGKSTLFNRLTGKRD-AIVSDTPGVTRDRKYGDA--EWGGREFILIDTGG--- 56
Query: 184 AAAPRELRTDWDKFTKDYFLNRSTLVS------VFLLIDASIPAKPIDLEYASWLGQNQI 237
+ D D K + ++ + ++D P D E A WL ++
Sbjct: 57 ------IEEDDDGLDKQ--IREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGK 108
Query: 238 PMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273
P+ LV K D GK+ + +F L GF
Sbjct: 109 PVILVANKID--------GKKEDAVAAEFYSL--GF 134
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 6e-09
Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 25/195 (12%)
Query: 117 TEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN---DSW 173
TE P + L L+G + GKSSL+N+L + ++ SK T R++ ++
Sbjct: 35 TEKEPVNVL----LMGATGAGKSSLINALFQG-EVKEVSKVGVGTDITTRLRLSYDGENL 89
Query: 174 YLVDLPGYG-YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWL 232
L D PG G E R + +DY L + L V LI A A D ++ +
Sbjct: 90 VLWDTPGLGDGKDKDAEHRQLY----RDY-LPKLDL--VLWLIKADDRALGTDEDFLRDV 142
Query: 233 GQNQI--PMTLVFTKCDKRKKKKN---GGKRPEENLNDF----QELIQGFFQTAPPWIMT 283
+ + V T+ D+ + + G +P + F E + FQ P +
Sbjct: 143 IILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAV 202
Query: 284 SSVTNQGRDEILLHM 298
S G E++ +
Sbjct: 203 SGRLPWGLKELVRAL 217
|
Length = 296 |
| >gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 6e-09
Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 52/188 (27%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-DSWY--LVDLPGYGYAA 185
+ G+ NVGKSSLLN+L R + A+ S G T+ + I+ L+D G
Sbjct: 7 VIAGKPNVGKSSLLNALAGRDR-AIVSDIAGTTRDVIEEEIDLGGIPVRLIDTAG----- 60
Query: 186 APRELR-TD-----------WDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG 233
LR T+ + + + L V L++DAS DLE
Sbjct: 61 ----LRETEDEIEKIGIERAREA------IEEADL--VLLVVDASEGLDEEDLEILELP- 107
Query: 234 QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDE 293
+ P+ +V K D + + + + I S+ T +G DE
Sbjct: 108 -AKKPVIVVLNKSDLLSDAEGISELNGKPI-----------------IAISAKTGEGIDE 149
Query: 294 ILLHMAQL 301
+ + +L
Sbjct: 150 LKEALLEL 157
|
TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159 |
| >gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 8e-09
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 131 VGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPG 180
VG NVGKS+L+N L R KK+A PG T+ RI + L+D PG
Sbjct: 121 VGIPNVGKSTLINRL-RGKKVAKVGNKPGVTRGQQWIRIGPNIELLDTPG 169
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171 |
| >gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 2e-08
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 31/181 (17%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQ-CIN-HFRIND-SWYLVDLPG---- 180
A++GR NVGKSSLLN+L+ ++ + S G T+ I+ F + + L+D G
Sbjct: 5 IAIIGRPNVGKSSLLNALLGEER-VIVSDIAGTTRDSIDVPFEYDGQKYTLIDTAGIRKK 63
Query: 181 ----YG--YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ 234
G + R L+ + R+ + V L++DAS DL A + +
Sbjct: 64 GKVTEGIEKYSVLRTLKA----------IERADV--VLLVLDASEGITEQDLRIAGLILE 111
Query: 235 NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEI 294
+ +V K D +K + K E+ L ++L F A P + S++T QG D++
Sbjct: 112 EGKALIIVVNKWDLVEKDEKTMKEFEKELR--RKL--PFLDYA-PIVFISALTGQGVDKL 166
Query: 295 L 295
Sbjct: 167 F 167
|
This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174 |
| >gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 2e-08
Identities = 39/157 (24%), Positives = 58/157 (36%), Gaps = 37/157 (23%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAA 185
A+VGR NVGKS+L N L K+ A+ + TPG T+ + L+D G
Sbjct: 5 AIVGRPNVGKSTLFNRLT-GKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIE--- 60
Query: 186 APRELRTDWDKFTKDYFLNR---STLVS------VFLLIDASIPAKPIDLEYASWLGQNQ 236
D F + ++ + ++D P D E A L ++
Sbjct: 61 -----------PDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSN 109
Query: 237 IPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273
P+ LV K D G E + +F L G
Sbjct: 110 KPVILVVNKVD--------GPDEEADAYEFYSL--GL 136
|
Length = 435 |
| >gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 1e-07
Identities = 44/194 (22%), Positives = 70/194 (36%), Gaps = 65/194 (33%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT-----QCIN----HFRINDSWYLVDLP 179
+ GR NVGKSSLLN+L+ ++ A+ + G T + IN R L+D
Sbjct: 219 VIAGRPNVGKSSLLNALLGEER-AIVTDIAGTTRDVIEEHINLDGIPLR------LIDTA 271
Query: 180 GYGYAAAPRELR-TD-----------WDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLE 227
G +R TD + + + L V L++DAS P + +
Sbjct: 272 G---------IRETDDEVEKIGIERSREA------IEEADL--VLLVLDASEP--LTEED 312
Query: 228 YASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVT 287
P+ +V K D + I + P I S+ T
Sbjct: 313 DEILEELKDKPVIVVLNKADLTGE------------------IDLEEENGKPVIRISAKT 354
Query: 288 NQGRDEILLHMAQL 301
+G DE+ + +L
Sbjct: 355 GEGIDELREAIKEL 368
|
Length = 449 |
| >gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-07
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 130 LVGRSNVGKSSLLNSLVRRKK----------LALTSKTPGKTQCINHFRINDSWYLVDLP 179
+VG +NVGKS+L+N+L++ S PG T + + + L D P
Sbjct: 130 VVGATNVGKSTLINALLKSNGGKVQAQALVQRLTVSPIPGTTLGLIKIPLGEGKKLYDTP 189
Query: 180 GY 181
G
Sbjct: 190 GI 191
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191 |
| >gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 3e-07
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGK---TQCINHFRINDSWYLVDLPG 180
+VG VGKSS++N+L + + A TS PG T+ I RI+ YL+D PG
Sbjct: 103 GVVGYPKVGKSSIINAL-KGRHSASTSPIPGSPGYTKGIQLVRIDSKIYLIDTPG 156
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157 |
| >gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 5e-07
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 27/145 (18%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWY------------LV 176
+ GR N GKSSL+N+L + +A+ S PG T D Y L+
Sbjct: 10 GIFGRRNAGKSSLINALT-GQDIAIVSDVPGTT--------TDPVYKAMELLPLGPVVLI 60
Query: 177 DLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ 236
D G ELR + T++ L+++ L L++DA + +LE L + +
Sbjct: 61 DTAGLDDEGELGELRV---EKTRE-VLDKTDL--ALLVVDAGVGPGEYELELIEELKERK 114
Query: 237 IPMTLVFTKCDKRKKKKNGGKRPEE 261
IP +V K D ++ K ++
Sbjct: 115 IPYIVVINKIDLGEESAELEKLEKK 139
|
This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 9e-07
Identities = 40/178 (22%), Positives = 62/178 (34%), Gaps = 38/178 (21%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRINDSWY---LVDLPGYGY 183
+VG NVGKS+LLN L K+++T PG T+ + Y L+D G
Sbjct: 5 VIVGDPNVGKSTLLNRL-LGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG--- 60
Query: 184 AAAPRELRTDWDKFTKDYFLNRSTLVSVF----LLIDASIPAKPIDLEYASWLGQNQIPM 239
+ D+D + Y+ + + VF L++D + E +P+
Sbjct: 61 -------QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESG-VPI 112
Query: 240 TLVFTKCDKR---KKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEI 294
LV K D R K + N I S+ T + D
Sbjct: 113 ILVGNKIDLRDAKLKTHVAFLFAKLNGEPI--------------IPLSAETGKNIDSA 156
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 2e-06
Identities = 46/189 (24%), Positives = 69/189 (36%), Gaps = 51/189 (26%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQ-------CINHFRINDSWYLVDLPGY 181
++GR NVGKSSLLN+L+ R + A+ + G T+ +N + LVD G
Sbjct: 221 VIIGRPNVGKSSLLNALLGRDR-AIVTDIAGTTRDVIEEDINLNGIPVR----LVDTAG- 274
Query: 182 GYAAAPRELRTDWDK---------FTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWL 232
+R D + + L V ++DAS P DL L
Sbjct: 275 --------IRETDDVVERIGIERAKKA---IEEADL--VLFVLDASQPLDKEDLALIELL 321
Query: 233 GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRD 292
+ + P+ +V K D L EL I S+ T +G D
Sbjct: 322 PKKK-PIIVVLNKAD---------------LVSKIELESEKLANGDAIISISAKTGEGLD 365
Query: 293 EILLHMAQL 301
+ + QL
Sbjct: 366 ALREAIKQL 374
|
Length = 454 |
| >gnl|CDD|206753 cd04178, Nucleostemin_like, A circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 5e-06
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGY 181
+VG NVGKSS++NSL R + TPG T+ + ++ L+D PG
Sbjct: 120 GVVGYPNVGKSSVINSLKRSRACN-VGATPGVTKSMQEVHLDKHVKLLDSPGV 171
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein. Length = 171 |
| >gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 6e-06
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 131 VGRSNVGKSSLLNSLVR----RKKLALTSKTPGKTQCINHFRINDSWYLVDLPGY 181
VG +NVGKSSL+N L++ K + TS PG T + ++D L D PG
Sbjct: 160 VGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGI 214
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 8e-06
Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 41/186 (22%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQ-CIN-HFRIND-SWYLVDLPG---- 180
A++GR NVGKSSL+N+++ ++ + S G T+ I+ F + + L+D G
Sbjct: 181 IAIIGRPNVGKSSLINAILGEER-VIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRK 239
Query: 181 ---------YGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASW 231
Y A + + R+ +V L+IDA+ DL A
Sbjct: 240 GKITESVEKYSVARTLKAIE-------------RADVVL--LVIDATEGISEQDLRIAGL 284
Query: 232 LGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ--TAPPWIMTSSVTNQ 289
+ + + +V K D + E + +F++ ++ P + S++T Q
Sbjct: 285 IEEAGRGIVIVVNKWD-------LVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQ 337
Query: 290 GRDEIL 295
G D++
Sbjct: 338 GLDKLF 343
|
Length = 444 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 1e-05
Identities = 48/216 (22%), Positives = 90/216 (41%), Gaps = 39/216 (18%)
Query: 109 EFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQ-CIN-H 166
E + E+ DG + A++GR NVGKS+L+N+L+ ++ + S G T+ I+
Sbjct: 157 ELLPEEEEEEE-EEDGPIKIAIIGRPNVGKSTLVNALLGEER-VIVSDIAGTTRDSIDIP 214
Query: 167 FRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTK-----DYFLNRSTLVS------VFLL 214
F N + L+D G +R + K + + TL + V L+
Sbjct: 215 FERNGKKYTLIDTAG---------IR----RKGKVTEGVEKYSVLRTLKAIERADVVLLV 261
Query: 215 IDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274
+DA+ DL A + + +V K D K E+ +F++ ++
Sbjct: 262 LDATEGITEQDLRIAGLALEAGKALVIVVNKWDLVKD--------EKTREEFKKELRRKL 313
Query: 275 QTAP--PWIMTSSVTNQGRDEILLHMAQLRNYWLKH 308
P + S++T QG D++L + ++ +
Sbjct: 314 PFLDFAPIVFISALTGQGVDKLLDAIDEVYENANRR 349
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-05
Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 23/136 (16%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT----QCINHFRINDSWYLVDLPGYGYA 184
A++GR NVGKS+LLN+LV +K+++ S P T + I N VD PG
Sbjct: 10 AIIGRPNVGKSTLLNALV-GQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPG---- 63
Query: 185 AAPRELRTDWDKFTKDYFLNR---STLVSV---FLLIDASIPAKPIDLEYASWLGQNQIP 238
+ + +N+ S L V ++DA P D L + + P
Sbjct: 64 -----IHKPKHALGE--LMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTP 116
Query: 239 MTLVFTKCDKRKKKKN 254
+ LV K DK K K
Sbjct: 117 VILVVNKIDKVKPKTV 132
|
Length = 298 |
| >gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 44/139 (31%), Positives = 57/139 (41%), Gaps = 30/139 (21%)
Query: 124 GLPEFALVGRSNVGKSSLLNSLVRRKK-----LALTSKTPGKTQCINHFRIND-SWYLVD 177
GL ALVGR NVGKSSLLN L ++ LA T++ P I+ W +D
Sbjct: 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIV----EIDGEDWLFID 504
Query: 178 LPGYGYAAAPRELRTDWDKFT-KDYF--------LNRSTLVSVFLLIDASIPAKPIDLEY 228
G ++ K T +Y+ + RS L L DAS P DL+
Sbjct: 505 TAG---------IKRRQHKLTGAEYYSSLRTQAAIERSEL--ALFLFDASQPISEQDLKV 553
Query: 229 ASWLGQNQIPMTLVFTKCD 247
S + LVF K D
Sbjct: 554 MSMAVDAGRALVLVFNKWD 572
|
Length = 712 |
| >gnl|CDD|206743 cd11383, YfjP, YfjP GTPase | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-05
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 11/124 (8%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN---DSWYLVDLPGYGYAA 185
L+G++ GKSSL N+L ++A T+ + D L+DLPG G
Sbjct: 1 GLMGKTGAGKSSLCNALF-GTEVAAVGDRRPTTRAAQAYVWQTGGDGLVLLDLPGVG--- 56
Query: 186 APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLE-YASWLGQNQIPMTLVFT 244
R R + L + L V L+DA A D + Y L + P+ V
Sbjct: 57 -ERGRRDREYEELYRRLLPEADL--VLWLLDADDRALAADHDFYLLPLAGHDAPLLFVLN 113
Query: 245 KCDK 248
+ D
Sbjct: 114 QVDP 117
|
The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. Length = 140 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 5e-05
Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 19/126 (15%)
Query: 129 ALVGRSNVGKSSLLNSLVRRK-----KLALTSKTPGKTQCINHFRINDSWYLVDLPGYGY 183
++G VGK++LLN LV + + + P KT I L D G
Sbjct: 9 VVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQ--LWDTAGQ-- 64
Query: 184 AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASI--PAKPIDLEYASWLGQNQIPMTL 241
E R+ + Y+ + ++ V+ LE L + +P+ L
Sbjct: 65 ----EEYRSLRPE----YYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILL 116
Query: 242 VFTKCD 247
V K D
Sbjct: 117 VGNKID 122
|
Length = 219 |
| >gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 6e-05
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 131 VGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPG 180
VG NVGKS+L+N L +K PG T+ +++D L+D PG
Sbjct: 124 VGIPNVGKSTLINRLAGKKVAK-VGNRPGVTKGQQWIKLSDGLELLDTPG 172
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276 |
| >gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 8e-05
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT 161
A++GR NVGKSSL+N+L+ +++ + S G T
Sbjct: 176 IAIIGRPNVGKSSLINALLGEERV-IVSDIAGTT 208
|
Length = 435 |
| >gnl|CDD|206685 cd01898, Obg, Obg GTPase | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-04
Identities = 49/198 (24%), Positives = 77/198 (38%), Gaps = 59/198 (29%)
Query: 130 LVGRSNVGKSSLLNSLVRRK-KLA---LTSKTPGKTQCIN----HFRINDSWYLVDLPGY 181
LVG N GKS+LL+++ K K+A T+ P N S+ + D+PG
Sbjct: 5 LVGLPNAGKSTLLSAISNAKPKIADYPFTTLVP------NLGVVRVDDGRSFVIADIPGL 58
Query: 182 --GYAAAPRELRTDWDKFTKDYFL---NRSTLVSVFLLIDASIPAKPID--------LE- 227
G A+ + L FL R+ ++ + +ID S P++ LE
Sbjct: 59 IEG-ASEGKGLGHR--------FLRHIERTRVL-LH-VIDLSGEDDPVEDYETIRNELEA 107
Query: 228 YASWLGQNQI----PMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283
Y N P +V K D EE +EL++
Sbjct: 108 Y------NPGLAEKPRIVVLNKIDLLDA--------EERFEKLKELLKELKGK--KVFPI 151
Query: 284 SSVTNQGRDEILLHMAQL 301
S++T +G DE+L +A+L
Sbjct: 152 SALTGEGLDELLKKLAKL 169
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170 |
| >gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPG 180
+VG NVGKSS +N+L K PG T+ +++ YL D PG
Sbjct: 95 GVVGLPNVGKSSFINAL-LNKFKLKVGSIPGTTKLQQDVKLDKEIYLYDTPG 145
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146 |
| >gnl|CDD|206751 cd01858, NGP_1, A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPG 180
+G NVGKSS++N+L R KK+ + PG+T+ + + YL+D PG
Sbjct: 107 FIGYPNVGKSSVINTL-RSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. Length = 157 |
| >gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 118 EDCPSDGLPEFALVGRSNVGKSSLLNSL 145
S G ALVG+ NVGKSSLLN L
Sbjct: 204 VGSASGGPRRVALVGKPNVGKSSLLNKL 231
|
Length = 472 |
| >gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 8e-04
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 118 EDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT 161
E LP A+VGR NVGKS+L+N ++ R++ A+ PG T
Sbjct: 31 EAAEGGPLPVVAVVGRPNVGKSTLVNRILGRRE-AVVEDVPGVT 73
|
Length = 472 |
| >gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 8e-04
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 17/61 (27%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKT------PGKT--QCINHFRIND-SWYLVDLP 179
ALVG NVGK++L N ALT PG T + F++ +VDLP
Sbjct: 1 ALVGNPNVGKTTLFN--------ALTGARQKVGNWPGVTVEKKEGEFKLGGKEIEIVDLP 52
Query: 180 G 180
G
Sbjct: 53 G 53
|
Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159 |
| >gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 38/196 (19%), Positives = 74/196 (37%), Gaps = 52/196 (26%)
Query: 128 FALVGRSNVGKSSLLNSLVRR---------------------KKLALTSKTPGKTQCINH 166
++G + GK++L SL+ + ++ +T KT
Sbjct: 2 VGVIGHVDHGKTTLTGSLLYQTGAIDRRGTRKETFLDTLKEERERGITIKTGVVEFEWPK 61
Query: 167 FRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVS--VFLLIDASIPAKPI 224
RIN +D PG+ F+K+ R + L++DA+ +P
Sbjct: 62 RRIN----FIDTPGHE-------------DFSKE--TVRGLAQADGALLVVDANEGVEPQ 102
Query: 225 DLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG-----FFQTAPP 279
E+ + +P+ + K D + G + +E L + +EL++ P
Sbjct: 103 TREHLNIALAGGLPIIVAVNKID-----RVGEEDFDEVLREIKELLKLIGFTFLKGKDVP 157
Query: 280 WIMTSSVTNQGRDEIL 295
I S++T +G +E+L
Sbjct: 158 IIPISALTGEGIEELL 173
|
The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183 |
| >gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.001
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 131 VGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPG 180
+G NVGKS+L+N L +K A T PG T+ ++ L+D PG
Sbjct: 127 IGIPNVGKSTLINRLAGKKI-AKTGNRPGVTKAQQWIKLGKGLELLDTPG 175
|
Length = 287 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.002
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 22/66 (33%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH--------------FRINDSWY 174
L G+S VGKS+LLN+L+ L +T I+ F +
Sbjct: 39 VLAGQSGVGKSTLLNALLPELDL--------RTGEISEKLGRGRHTTTHVELFPLPGGGL 90
Query: 175 LVDLPG 180
L+D PG
Sbjct: 91 LIDTPG 96
|
Length = 161 |
| >gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.003
Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQ 162
A+VG NVGKSSLLN+L+++ + A+ S G T+
Sbjct: 207 AIVGSPNVGKSSLLNALLKQDR-AIVSDIKGTTR 239
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442 |
| >gnl|CDD|206666 cd01878, HflX, HflX GTPase family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 0.003
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLA 152
G+P ALVG +N GKS+L N+L LA
Sbjct: 40 GVPTVALVGYTNAGKSTLFNALTGADVLA 68
|
HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. Length = 204 |
| >gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.003
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 20/127 (15%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKL-----ALTSKTPGKTQCINHFRINDSWYLVDLPGYG 182
A+VG + GKS+LLN+L+ + L T+ + + + LVD PG
Sbjct: 3 LAVVGEFSAGKSTLLNALLGEEVLPTGVTPTTAVI-----TVLRYGLLKGVVLVDTPGLN 57
Query: 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYAS-WLGQNQIPMTL 241
+ E T+ T+ + L R+ V ++ A P + E+ L + +
Sbjct: 58 ---STIEHHTEI---TESF-LPRADA--VIFVLSADQPLTESEREFLKEILKWSGKKIFF 108
Query: 242 VFTKCDK 248
V K D
Sbjct: 109 VLNKIDL 115
|
The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 0.003
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 22/66 (33%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN-------H-------FRINDSWY 174
LVG+S VGKS+LLN+L+ L T I+ H F +
Sbjct: 89 VLVGQSGVGKSTLLNALLPELVL--------ATGEISEKLGRGRHTTTHRELFPLPGGGL 140
Query: 175 LVDLPG 180
++D PG
Sbjct: 141 IIDTPG 146
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 308 | |||
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 100.0 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.98 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.98 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.97 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.97 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.97 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.97 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.97 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.95 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.94 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 99.94 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.94 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 99.92 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.92 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.91 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.91 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.91 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.91 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.9 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.9 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 99.9 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.9 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.9 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.9 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.9 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.9 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.89 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.89 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.89 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 99.89 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.89 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.89 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.89 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 99.89 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.89 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.89 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.89 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.89 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.89 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.89 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.89 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.89 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.88 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.88 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.88 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.88 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.88 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.88 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.88 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.88 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.88 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.88 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.88 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 99.88 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.88 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.88 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.88 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.88 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.88 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.88 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.88 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.87 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.87 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.87 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 99.87 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.87 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.87 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.87 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.87 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.87 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.87 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.87 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.87 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.87 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.87 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.87 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.87 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.87 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.87 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.87 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.87 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.87 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.87 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.87 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.86 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.86 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.86 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.86 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.86 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.86 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.86 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.86 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.86 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.86 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.86 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.86 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.86 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.86 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.86 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.86 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 99.86 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.86 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.86 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.85 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.85 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.85 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.85 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.85 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.85 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.85 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.85 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.85 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.85 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.85 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.85 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.85 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.85 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.85 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.85 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.85 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.84 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.84 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.84 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.84 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.84 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.84 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.84 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.84 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.84 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.84 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.84 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.84 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.84 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.84 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.84 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.84 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.83 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.83 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.83 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.83 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.83 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.83 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.83 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.83 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.83 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.83 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.83 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.83 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.83 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.83 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.82 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.82 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.82 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.82 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.82 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.82 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.82 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.82 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.82 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.82 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.81 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.81 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.81 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.81 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.8 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.8 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.8 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.8 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.79 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.78 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.78 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.78 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.78 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.78 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.77 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.77 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.77 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.77 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.77 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.77 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.77 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.77 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.76 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.76 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.76 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.76 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.75 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.75 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.75 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.75 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.75 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.74 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.74 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.74 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.74 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.73 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.73 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.72 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.72 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.71 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.71 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.71 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.71 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 99.7 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.7 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.7 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.7 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.7 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.69 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.69 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.69 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.67 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.67 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.67 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.67 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.67 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.66 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.66 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.66 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 99.66 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 99.65 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.65 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.64 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.64 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.64 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.63 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.63 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.63 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.63 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.62 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.62 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.61 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.61 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.61 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.61 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.61 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.59 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.59 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.59 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.59 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.58 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.58 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.58 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.58 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.58 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.57 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.56 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.56 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.56 | |
| PTZ00099 | 176 | rab6; Provisional | 99.55 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.55 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.55 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 99.54 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.53 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.53 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.52 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.51 | |
| PRK13768 | 253 | GTPase; Provisional | 99.49 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.49 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.48 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.48 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.46 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.44 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.44 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.44 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.43 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 99.42 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.42 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.4 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.38 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.38 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.37 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 99.37 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.36 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.36 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.36 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.35 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.35 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.35 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.35 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.34 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.33 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.31 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.31 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.3 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.3 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.3 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.3 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.29 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.29 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.29 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 99.27 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 99.24 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.24 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.23 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 99.22 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 99.21 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.21 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.21 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.2 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 99.2 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.2 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.19 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.17 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.17 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.17 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.17 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.16 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.16 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 99.15 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 99.14 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.12 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 99.1 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 99.07 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 99.07 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.05 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.02 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 99.02 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.99 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.98 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 98.96 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 98.96 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 98.96 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.95 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 98.93 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.93 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.92 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 98.89 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 98.89 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 98.87 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.87 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.86 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.86 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.81 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.81 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 98.8 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.8 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.77 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 98.76 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.73 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 98.72 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.72 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.71 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.71 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.71 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.66 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.64 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.63 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.61 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.61 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 98.61 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.6 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 98.58 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 98.57 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 98.56 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 98.55 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 98.55 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.54 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.53 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.48 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 98.46 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 98.46 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 98.41 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.4 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.4 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.39 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.35 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.33 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 98.32 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.32 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.31 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 98.3 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 98.3 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 98.29 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 98.25 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.23 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.21 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.19 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.18 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.16 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.1 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 98.07 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 98.05 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 98.04 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.99 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.94 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.93 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 97.92 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.92 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 97.91 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.91 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.86 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 97.85 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 97.84 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 97.84 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 97.82 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 97.74 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.72 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.67 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 97.65 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 97.63 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 97.63 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 97.59 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 97.59 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.55 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.52 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.5 | |
| PF01018 | 156 | GTP1_OBG: GTP1/OBG; InterPro: IPR006169 Several pr | 97.49 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.46 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 97.45 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.45 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.44 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.42 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.41 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 97.41 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.38 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 97.36 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 97.31 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 97.29 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.28 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.26 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.24 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 97.16 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 97.15 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 97.1 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 96.96 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 96.96 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 96.95 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 96.94 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 96.86 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 96.85 | |
| PF08433 | 270 | KTI12: Chromatin associated protein KTI12 ; InterP | 96.82 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 96.8 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 96.77 | |
| KOG2743 | 391 | consensus Cobalamin synthesis protein [Coenzyme tr | 96.76 | |
| KOG0446 | 657 | consensus Vacuolar sorting protein VPS1, dynamin, | 96.75 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 96.69 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 96.68 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 96.59 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 96.5 | |
| COG0194 | 191 | Gmk Guanylate kinase [Nucleotide transport and met | 96.45 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 96.43 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 96.41 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 96.38 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 96.38 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 96.34 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 96.31 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 96.29 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 96.27 | |
| TIGR03574 | 249 | selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem | 96.27 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 96.26 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 96.21 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 96.18 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 96.14 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 96.13 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 96.12 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 96.01 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 95.99 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 95.98 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 95.97 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 95.97 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 95.96 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 95.96 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 95.93 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 95.89 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 95.88 | |
| PRK06217 | 183 | hypothetical protein; Validated | 95.86 | |
| smart00072 | 184 | GuKc Guanylate kinase homologues. Active enzymes c | 95.85 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 95.85 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 95.85 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 95.83 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 95.82 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 95.81 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 95.81 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 95.8 | |
| KOG3347 | 176 | consensus Predicted nucleotide kinase/nuclear prot | 95.8 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 95.79 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 95.79 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 95.79 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 95.78 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 95.78 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 95.77 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 95.76 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 95.76 | |
| PF00625 | 183 | Guanylate_kin: Guanylate kinase; InterPro: IPR0081 | 95.75 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 95.73 | |
| COG4088 | 261 | Predicted nucleotide kinase [Nucleotide transport | 95.72 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 95.72 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 95.71 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 95.7 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 95.69 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 95.69 | |
| PRK03839 | 180 | putative kinase; Provisional | 95.68 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 95.67 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 95.67 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 95.66 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 95.65 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 95.65 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 95.64 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 95.63 |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=251.24 Aligned_cols=213 Identities=26% Similarity=0.323 Sum_probs=160.4
Q ss_pred EEcCCCCCcCCCchh--hHHHHhCCCeEEEeecccchhhhhHHHhhcccCCCCCCCCCCC--------------eEEEEc
Q 021750 69 LFVPPETEVSIDDSS--LSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDGLP--------------EFALVG 132 (308)
Q Consensus 69 i~v~~gt~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~~~--------------~I~lvG 132 (308)
|.||.||.+.+.++. +.+...+++++++|+||.|| +||.+|.++.+++|+.++.+.+ +|+|+|
T Consensus 87 i~vP~Gt~v~~~~~~~~~~dl~~~~~~~~va~GG~gG-~gn~~F~~s~~~~p~~~~~G~~ge~~~~~lelk~~adVglVG 165 (424)
T PRK12297 87 IKVPVGTVVKDAETGEVIADLVEPGQEVVVAKGGRGG-RGNAHFATSTNQAPRIAENGEPGEERELRLELKLLADVGLVG 165 (424)
T ss_pred EecCCCCEEEECCCCcEEeeeccCCcEEEEECCCCCC-cCchhhcCCCCCCCCcCCCCCCCeEeEEEEeecccCcEEEEc
Confidence 999999999986654 55566788999999999986 9999999999999999998877 999999
Q ss_pred CCCCCHHHHHHHHhcCCcceeccCCCCceEEEEE--EEeC--CCEEEecCCCcccCCC-chhhhhchHHHHHHHHHhcCC
Q 021750 133 RSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH--FRIN--DSWYLVDLPGYGYAAA-PRELRTDWDKFTKDYFLNRST 207 (308)
Q Consensus 133 ~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~--~~~~--~~~~liDtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 207 (308)
.||||||||+|+|++.+ +.++..|++|..... +.++ ..++++||||+++... +.. +...|++....
T Consensus 166 ~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~g-------Lg~~fLrhier 236 (424)
T PRK12297 166 FPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVG-------LGHQFLRHIER 236 (424)
T ss_pred CCCCCHHHHHHHHHcCC--CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccch-------HHHHHHHHHhh
Confidence 99999999999999875 345677888876543 3333 4799999999976322 222 33445555555
Q ss_pred ccEEEEEEeCCCC---CChhHH-HHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 208 LVSVFLLIDASIP---AKPIDL-EYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 208 ~~~vl~viD~~~~---~~~~~~-~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
++++++|+|+++. ....+. .+..++.. .++|++||+||+|+.. ..+.++.+.+.+. .
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~--------~~e~l~~l~~~l~------~ 302 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE--------AEENLEEFKEKLG------P 302 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC--------CHHHHHHHHHHhC------C
Confidence 6779999999754 222221 22223321 4799999999999843 2233444444432 5
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
+++++||++++|+++++++|.+.+...
T Consensus 303 ~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 303 KVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 799999999999999999999887653
|
|
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=244.71 Aligned_cols=217 Identities=22% Similarity=0.276 Sum_probs=157.8
Q ss_pred EEcCCCCCcCCCchh--hHHHHhCCCeEEEeecccchhhhhHHHhhcccCCCCCCCCCC--------------CeEEEEc
Q 021750 69 LFVPPETEVSIDDSS--LSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDGL--------------PEFALVG 132 (308)
Q Consensus 69 i~v~~gt~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~~--------------~~I~lvG 132 (308)
|.||.||.+.+.++. +.+...+++++++|+||.|| ++|.+|.++.+++|..++.|. ++|+|||
T Consensus 87 ~~vp~gt~v~~~~~~~~~~d~~~~~~~~~~a~gg~gg-~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~~adVglVG 165 (335)
T PRK12299 87 LKVPVGTQIYDADTGELIADLTEHGQRFLVAKGGKGG-LGNAHFKSSTNRAPRYATPGEPGEERWLRLELKLLADVGLVG 165 (335)
T ss_pred EEeCCCCEEEECCCCcEEEEcCCCCcEEEEecCCCCc-CCchhhccccCCCCccccCCCCCcEEEEEEEEcccCCEEEEc
Confidence 999999999986654 44566778899999999986 999999999999998877663 4999999
Q ss_pred CCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEe-CC-CEEEecCCCcccCC-CchhhhhchHHHHHHHHHhcCC
Q 021750 133 RSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRI-ND-SWYLVDLPGYGYAA-APRELRTDWDKFTKDYFLNRST 207 (308)
Q Consensus 133 ~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~-~~-~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 207 (308)
.||||||||+|+|++.+ +.++..|++|... ..+.+ +. ++++|||||+.+.. .... +...|++....
T Consensus 166 ~PNaGKSTLln~ls~a~--~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~g-------Lg~~flrhie~ 236 (335)
T PRK12299 166 LPNAGKSTLISAVSAAK--PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAG-------LGHRFLKHIER 236 (335)
T ss_pred CCCCCHHHHHHHHHcCC--CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcccc-------HHHHHHHHhhh
Confidence 99999999999999875 4577788888764 33444 33 69999999997643 2223 33344444445
Q ss_pred ccEEEEEEeCCCCCChhHH-HHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021750 208 LVSVFLLIDASIPAKPIDL-EYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 208 ~~~vl~viD~~~~~~~~~~-~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
++++++|+|+++..+..+. .+...+.. .++|+++|+||+|+.+... ...+..+.+ .. . ...+++
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~----~~~~~~~~~---~~-~--~~~~i~ 306 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEE----EREKRAALE---LA-A--LGGPVF 306 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchh----HHHHHHHHH---HH-h--cCCCEE
Confidence 5679999999876544332 12222221 4789999999999975331 011111111 11 1 136899
Q ss_pred EeecCCCCCHHHHHHHHHHHHHHH
Q 021750 282 MTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
++||++++|+++++++|.+.+.+.
T Consensus 307 ~iSAktg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 307 LISAVTGEGLDELLRALWELLEEA 330 (335)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999988654
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-31 Score=235.46 Aligned_cols=219 Identities=25% Similarity=0.327 Sum_probs=171.3
Q ss_pred EEcCCCCCcCCCchh--hHHHHhCCCeEEEeecccchhhhhHHHhhcccCCCCCCCCCCC--------------eEEEEc
Q 021750 69 LFVPPETEVSIDDSS--LSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDGLP--------------EFALVG 132 (308)
Q Consensus 69 i~v~~gt~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~~~--------------~I~lvG 132 (308)
|.||+||.+.+.++. +.+....++++++++||.|| +||.+|.++.+++|+.+..|.+ +|++||
T Consensus 88 i~VP~GT~v~d~~t~e~i~Dl~~~gq~~~~akGG~GG-~GN~~Fks~~nrAP~~a~~G~~Ge~r~v~LELKllADVGLVG 166 (369)
T COG0536 88 IKVPVGTVVRDEDTGELLADLTEHGQRFLVAKGGRGG-LGNAHFKSSVNRAPRFATPGEPGEERDLRLELKLLADVGLVG 166 (369)
T ss_pred EEcCCCCEEEeCCCCeEehhhccCCcEEEEEcCCCCC-ccchhhcCcccCCcccCCCCCCCceEEEEEEEeeeccccccc
Confidence 999999999998876 66777889999999999986 9999999999999999887754 899999
Q ss_pred CCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEE--eCCCEEEecCCCcccC-CCchhhhhchHHHHHHHHHhcCC
Q 021750 133 RSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFR--INDSWYLVDLPGYGYA-AAPRELRTDWDKFTKDYFLNRST 207 (308)
Q Consensus 133 ~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~--~~~~~~liDtpG~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 207 (308)
.|||||||||++++..+ +.+.++|.||... ..+. .+..|++.|+||+++. +.+.+++.+ |++| .+++.
T Consensus 167 ~PNaGKSTlls~vS~Ak--PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~---FLrH--IERt~ 239 (369)
T COG0536 167 LPNAGKSTLLSAVSAAK--PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLR---FLRH--IERTR 239 (369)
T ss_pred CCCCcHHHHHHHHhhcC--CcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHH---HHHH--HHhhh
Confidence 99999999999999986 5566777777643 2222 2447999999999984 667777766 7777 55665
Q ss_pred ccEEEEEEeCCCCCC---hhHH-----HHHHHh-ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 208 LVSVFLLIDASIPAK---PIDL-----EYASWL-GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 208 ~~~vl~viD~~~~~~---~~~~-----~l~~~~-~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
+ +++|+|.+.... ..+. ++..+- ...++|.+||+||+|+.. .++.++.+.+.+.+...+..
T Consensus 240 v--L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~--------~~e~~~~~~~~l~~~~~~~~ 309 (369)
T COG0536 240 V--LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL--------DEEELEELKKALAEALGWEV 309 (369)
T ss_pred e--eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc--------CHHHHHHHHHHHHHhcCCCc
Confidence 4 899999985542 1121 222221 136899999999999765 45667788887776655444
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.++ +||.+++|+++++..+.+++....
T Consensus 310 ~~~-ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 310 FYL-ISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred cee-eehhcccCHHHHHHHHHHHHHHhh
Confidence 444 999999999999999999987653
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-31 Score=244.91 Aligned_cols=217 Identities=21% Similarity=0.256 Sum_probs=158.0
Q ss_pred EEcCCCCCcCCCchh--hHHHHhCCCeEEEeecccchhhhhHHHhhcccCCCCCCCCCCC--------------eEEEEc
Q 021750 69 LFVPPETEVSIDDSS--LSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDGLP--------------EFALVG 132 (308)
Q Consensus 69 i~v~~gt~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~~~--------------~I~lvG 132 (308)
|.||.||.+++.++. +.+...+++++++|+||+|| ++|.+|.++.+++|+.++.+.+ +|+|||
T Consensus 88 i~vP~gt~v~~~~~~~~~~d~~~~~~~~~~a~GG~gG-~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~iadValVG 166 (390)
T PRK12298 88 IKVPVGTRVIDADTGEVIGDLTEHGQRLLVAKGGWHG-LGNTRFKSSVNRAPRQKTPGTPGEERELKLELKLLADVGLLG 166 (390)
T ss_pred EEcCCCCEEEeCCCCcEEEEeccCCcEEEEecCCCCc-cchhhhccCccCCCcccCCCCCCceEEEEEeeeccccEEEEc
Confidence 999999999876654 44566778999999999986 9999999999999999988876 999999
Q ss_pred CCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC--CEEEecCCCcccCC-CchhhhhchHHHHHHHHHhcCC
Q 021750 133 RSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND--SWYLVDLPGYGYAA-APRELRTDWDKFTKDYFLNRST 207 (308)
Q Consensus 133 ~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~--~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 207 (308)
.||||||||+|+|++.+ +.+++.|+||+... .+.+++ .++++||||+.+.. .+..++.. ++ +....
T Consensus 167 ~PNaGKSTLln~Lt~~k--~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~---~l----~~i~r 237 (390)
T PRK12298 167 LPNAGKSTFIRAVSAAK--PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIR---FL----KHLER 237 (390)
T ss_pred CCCCCHHHHHHHHhCCc--ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHH---HH----HHHHh
Confidence 99999999999999875 47888999987643 344443 59999999998643 22232222 33 33444
Q ss_pred ccEEEEEEeCCCC---CChhH-HHHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 208 LVSVFLLIDASIP---AKPID-LEYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 208 ~~~vl~viD~~~~---~~~~~-~~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
++++++|+|++.. ....+ ..+...+.. .++|+++|+||+|+....+ +.+..+.+.+.+....
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e---------l~~~l~~l~~~~~~~~ 308 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE---------AEERAKAIVEALGWEG 308 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH---------HHHHHHHHHHHhCCCC
Confidence 5679999998732 22221 222333322 3689999999999875321 2222222322222224
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+++++||++++|+++++++|.+.+.+
T Consensus 309 ~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 309 PVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 79999999999999999999998764
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-31 Score=249.13 Aligned_cols=217 Identities=21% Similarity=0.238 Sum_probs=160.0
Q ss_pred EEcCCCCCcCCCchh-hHHHHhCCCeEEEeecccchhhhhHHHhhcccCCCCCCCCCC--------------CeEEEEcC
Q 021750 69 LFVPPETEVSIDDSS-LSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDGL--------------PEFALVGR 133 (308)
Q Consensus 69 i~v~~gt~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~~--------------~~I~lvG~ 133 (308)
|.||+||.+.+.+.+ +.+...+++++++|+||.|| +||.+|.++.+++|..++.|. .+|+|||.
T Consensus 89 i~VP~Gt~v~~~~~~~~~dl~~~g~~~~~a~GG~GG-~Gn~~f~~~~~~~p~~~~~G~~Ge~~~~~leLk~~adV~LVG~ 167 (500)
T PRK12296 89 LPVPDGTVVLDEDGEVLADLVGAGTRFVAAAGGRGG-LGNAALASKARKAPGFALLGEPGEERDLVLELKSVADVGLVGF 167 (500)
T ss_pred EecCCCcEEEcCCCcEEeeeccCCCEEEEEccCCCc-CCCcccCCccCCCCccccCCCCCceEEEEEEecccceEEEEEc
Confidence 999999999986666 45566789999999999986 999999999999999887664 49999999
Q ss_pred CCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCC-CchhhhhchHHHHHHHHHhcCCcc
Q 021750 134 SNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAA-APRELRTDWDKFTKDYFLNRSTLV 209 (308)
Q Consensus 134 ~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 209 (308)
||||||||+|+|++.+ +.++..|++|... ..+.+++ +++++||||+++.. .+.. +...+++....++
T Consensus 168 PNAGKSTLln~Ls~ak--pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~g-------Lg~~fLrhierad 238 (500)
T PRK12296 168 PSAGKSSLISALSAAK--PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKG-------LGLDFLRHIERCA 238 (500)
T ss_pred CCCCHHHHHHHHhcCC--ccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhH-------HHHHHHHHHHhcC
Confidence 9999999999999875 4467888888764 3344444 89999999997532 2222 2223344444556
Q ss_pred EEEEEEeCCCCC----ChhH-----HHHHHHhc----------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHH
Q 021750 210 SVFLLIDASIPA----KPID-----LEYASWLG----------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELI 270 (308)
Q Consensus 210 ~vl~viD~~~~~----~~~~-----~~l~~~~~----------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 270 (308)
++++|+|++... ...+ .++..+.. ..++|++||+||+|+.+.. +..+.+.+.+
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~--------el~e~l~~~l 310 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR--------ELAEFVRPEL 310 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH--------HHHHHHHHHH
Confidence 799999997532 1111 13333332 2479999999999997532 2222333333
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
... .+++|++||++++|+++++++|.+++..++
T Consensus 311 ~~~---g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 311 EAR---GWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred HHc---CCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 321 368999999999999999999999998765
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=214.77 Aligned_cols=193 Identities=42% Similarity=0.655 Sum_probs=168.9
Q ss_pred hHHHhhcccCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCC
Q 021750 107 QAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAA 186 (308)
Q Consensus 107 ~~~f~~s~~~~~~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~ 186 (308)
+.+|..++....+.|++..+.|+++|++|||||||||+|++.+..+.++.+||.|+..+.+.+++++.++|.||+++...
T Consensus 6 ~~~f~~sa~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv 85 (200)
T COG0218 6 KAKFITSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKV 85 (200)
T ss_pred ccEEEEecCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccC
Confidence 46788888888899999999999999999999999999999887899999999999999999999999999999999887
Q ss_pred chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHH
Q 021750 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDF 266 (308)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~ 266 (308)
..+..++|..++.+|+..+....++++++|+.++....|.++.+|+...++|++||+||+|.....+ ....+..+
T Consensus 86 ~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~-----~~k~l~~v 160 (200)
T COG0218 86 PKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSE-----RNKQLNKV 160 (200)
T ss_pred CHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhH-----HHHHHHHH
Confidence 7788889999999999999888899999999999999999999999999999999999999997543 33445555
Q ss_pred HHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 267 QELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 267 ~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
++.+.....+...++..|+.++.|++++...|.+.+..
T Consensus 161 ~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 161 AEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 55555444333338899999999999999999887764
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=235.84 Aligned_cols=216 Identities=24% Similarity=0.301 Sum_probs=154.6
Q ss_pred cCe-EEcCCCCCcCCCchh--hHHHHhCCCeEEEeecccchhhhhHHHhhcccCCCCCCCCCC--------------CeE
Q 021750 66 LEK-LFVPPETEVSIDDSS--LSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDGL--------------PEF 128 (308)
Q Consensus 66 ~~~-i~v~~gt~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~~--------------~~I 128 (308)
-|. |.||.||.+.+.++. +.+...+++++++|+||.|| .+|.+|.++.+++|...+.+. ++|
T Consensus 82 ~d~~~~vp~gt~v~~~~~~~~~~~~~~~~~~~~~a~gg~gg-~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~~adV 160 (329)
T TIGR02729 82 EDLVIKVPVGTVVYDADTGELLADLTEPGQRFVVAKGGRGG-LGNAHFKSSTNRAPRFATPGEPGEERWLRLELKLLADV 160 (329)
T ss_pred CceEEEeCCCCEEEECCCCcEEeEeccCCcEEEecCCCCCC-CCcccccCccCCCCcccCCCCCCcEEEEEEEeeccccE
Confidence 344 999999999986554 44566778899999999986 999999999999998877663 599
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeC--CCEEEecCCCcccCC-CchhhhhchHHHHHHHHH
Q 021750 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIN--DSWYLVDLPGYGYAA-APRELRTDWDKFTKDYFL 203 (308)
Q Consensus 129 ~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~--~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~~~ 203 (308)
+|||.||||||||+|+|++.+ +.++..|++|... ..+.++ .++.+|||||+.+.. .... +...|++
T Consensus 161 ~lvG~pnaGKSTLl~~lt~~~--~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~g-------Lg~~flr 231 (329)
T TIGR02729 161 GLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAG-------LGHRFLK 231 (329)
T ss_pred EEEcCCCCCHHHHHHHHhcCC--ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccccc-------HHHHHHH
Confidence 999999999999999999875 3466667666543 334443 379999999997643 2223 2233333
Q ss_pred hcCCccEEEEEEeCCCC---CChhHH-HHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 204 NRSTLVSVFLLIDASIP---AKPIDL-EYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~---~~~~~~-~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
....++++++|+|++.. ....+. .+...+. ..++|+++|+||+|+.... ..+++.+.+.+.+
T Consensus 232 hierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~---------~~~~~~~~l~~~~ 302 (329)
T TIGR02729 232 HIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE---------ELAELLKELKKAL 302 (329)
T ss_pred HHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH---------HHHHHHHHHHHHc
Confidence 33445669999999865 222221 1222221 1479999999999997532 1333333333322
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+++++||++++|+++++++|.+.+
T Consensus 303 --~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 303 --GKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred --CCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 26899999999999999999998865
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=233.26 Aligned_cols=243 Identities=21% Similarity=0.293 Sum_probs=179.7
Q ss_pred CCCchHHHHhhcCe----EEcCCCCCcCCCchhhHHHHhCCC-e--EEEeecccch--hhhhHHHhhccc----------
Q 021750 55 EPEPEPHVAISLEK----LFVPPETEVSIDDSSLSTRILKGS-N--IVLSKYARDA--QVAQAEFVKSSV---------- 115 (308)
Q Consensus 55 ~~~~~~~~~~~~~~----i~v~~gt~~~~~~~~~~~~~~~~~-~--i~~~~~~~~~--~~~~~~f~~s~~---------- 115 (308)
..++.+|...|+++ |||++|..+..++++.++..++.. + |+++++.++. ....++|++-..
T Consensus 70 ~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~H 149 (444)
T COG1160 70 QELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEH 149 (444)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhh
Confidence 45689999999999 999999999888888666555544 3 6666665543 233356664111
Q ss_pred -------------CC-C-C-CCCC---CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CE
Q 021750 116 -------------RT-E-D-CPSD---GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SW 173 (308)
Q Consensus 116 -------------~~-~-~-~~~~---~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~ 173 (308)
.. + + .... ...+|+++|.||||||||+|+|++.++ .++++.+|+|++.. .+++++ ++
T Consensus 150 g~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR-~Iv~~~aGTTRD~I~~~~e~~~~~~ 228 (444)
T COG1160 150 GRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEER-VIVSDIAGTTRDSIDIEFERDGRKY 228 (444)
T ss_pred ccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCce-EEecCCCCccccceeeeEEECCeEE
Confidence 11 1 1 1122 347999999999999999999999887 78999999999864 444555 79
Q ss_pred EEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCccc
Q 021750 174 YLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKK 253 (308)
Q Consensus 174 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~ 253 (308)
.++||+|+.....-.+--+.|. .. ..+.....+++|++|+|++.+.+.++..+..++.+.+++++||+||||+.+..
T Consensus 229 ~liDTAGiRrk~ki~e~~E~~S-v~-rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~- 305 (444)
T COG1160 229 VLIDTAGIRRKGKITESVEKYS-VA-RTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEED- 305 (444)
T ss_pred EEEECCCCCcccccccceEEEe-eh-hhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCch-
Confidence 9999999976433222111222 11 22244455678999999999999999999999999999999999999998752
Q ss_pred CCCCCchhhHHHHHHHHHhhhc--CCCCEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q 021750 254 NGGKRPEENLNDFQELIQGFFQ--TAPPWIMTSSVTNQGRDEILLHMAQLRNYWLK 307 (308)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~~ 307 (308)
....+++.+.++..++ .+.+++++||++|.|++++++.+.+.++.|.+
T Consensus 306 ------~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ 355 (444)
T COG1160 306 ------EATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATR 355 (444)
T ss_pred ------hhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhcc
Confidence 2334555555554443 46899999999999999999999999998764
|
|
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-27 Score=206.64 Aligned_cols=212 Identities=21% Similarity=0.292 Sum_probs=156.0
Q ss_pred eEEcCCCCCcCCCc-hhhHH-HHhCCCeEEEeecccchhhhhHHHhhcccCCCCCCCCC--------------CCeEEEE
Q 021750 68 KLFVPPETEVSIDD-SSLST-RILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDG--------------LPEFALV 131 (308)
Q Consensus 68 ~i~v~~gt~~~~~~-~~~~~-~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~--------------~~~I~lv 131 (308)
.|.||.||.+.+.+ ..+++ +..++.++++++||.|| ++|..|.+..++.|...+.| +++|++|
T Consensus 124 ~i~VP~Gt~v~d~~~~~~v~el~~~~~~~i~arGG~GG-~gn~~fls~~~r~p~~~~~G~~G~e~~~~lELKsiadvGLV 202 (366)
T KOG1489|consen 124 EIRVPVGTVVKDIEQGKLVAELTKEGDRVIAARGGEGG-KGNKFFLSNENRSPKFSKPGLNGEERVIELELKSIADVGLV 202 (366)
T ss_pred EEecCCccEEeecccchhHHHhccCCcEEEEeecCCCC-ccceeeccccccCcccccCCCCCceEEEEEEeeeeccccee
Confidence 38899999999843 34555 55668889999999986 99999999888888776555 4599999
Q ss_pred cCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC--CEEEecCCCcccC-CCchhhhhchHHHHHHHHHhcC
Q 021750 132 GRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND--SWYLVDLPGYGYA-AAPRELRTDWDKFTKDYFLNRS 206 (308)
Q Consensus 132 G~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~--~~~liDtpG~~~~-~~~~~~~~~~~~~~~~~~~~~~ 206 (308)
|.||+|||||+|+|++.+ +.+.+++.||... ..+.+++ ++.+.|+||++++ +...+++.+ |++| .+++
T Consensus 203 G~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~---FLrH--iER~ 275 (366)
T KOG1489|consen 203 GFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYK---FLRH--IERC 275 (366)
T ss_pred cCCCCcHHHHHHHhhccC--CcccccceeeeccccceeeccccceeEeccCccccccccccCcccHH---HHHH--HHhh
Confidence 999999999999999986 4566666666543 3344444 6999999999985 556665554 6766 4444
Q ss_pred CccEEEEEEeCCCC---CChhHHHH-H---HHhc--cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 207 TLVSVFLLIDASIP---AKPIDLEY-A---SWLG--QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 207 ~~~~vl~viD~~~~---~~~~~~~l-~---~~~~--~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
. .++||+|.+.+ ...+..++ . +.+. ..++|.+||+||+|+.+.+ ...++++.+.+. .
T Consensus 276 ~--~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-------~~~l~~L~~~lq-----~ 341 (366)
T KOG1489|consen 276 K--GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE-------KNLLSSLAKRLQ-----N 341 (366)
T ss_pred c--eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH-------HHHHHHHHHHcC-----C
Confidence 4 49999999987 22222211 1 1111 2689999999999997432 233466666665 2
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
..++++||++++|+.+++..|.+.
T Consensus 342 ~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 342 PHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred CcEEEeeeccccchHHHHHHHhhc
Confidence 469999999999999999988764
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-26 Score=192.72 Aligned_cols=178 Identities=47% Similarity=0.751 Sum_probs=138.3
Q ss_pred HHhhcccCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCch
Q 021750 109 EFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPR 188 (308)
Q Consensus 109 ~f~~s~~~~~~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~ 188 (308)
+|..++....+.++...++|+++|.+|+|||||+|+|++..+...+++.+++|.....+..++.+.+|||||+.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~ 81 (179)
T TIGR03598 2 EFVKSAVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSK 81 (179)
T ss_pred EEEeeeccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCCh
Confidence 45667777778888999999999999999999999999976556678888888887777766789999999987654433
Q ss_pred hhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHH
Q 021750 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQE 268 (308)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 268 (308)
.....|..+...|+..+..++++++|+|++.+....+.++..++...++|+++|+||+|+....+ .....+++.+
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-----~~~~~~~i~~ 156 (179)
T TIGR03598 82 EEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSE-----LNKQLKKIKK 156 (179)
T ss_pred hHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHH-----HHHHHHHHHH
Confidence 33446667777888877777889999999988887777777777778899999999999975332 2334555555
Q ss_pred HHHhhhcCCCCEEEeecCCCCCHH
Q 021750 269 LIQGFFQTAPPWIMTSSVTNQGRD 292 (308)
Q Consensus 269 ~~~~~~~~~~~~~~vSA~~g~gi~ 292 (308)
.+... ....++|++||++|+|++
T Consensus 157 ~l~~~-~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 157 ALKKD-ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HHhhc-cCCCceEEEECCCCCCCC
Confidence 55443 223589999999999974
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-27 Score=201.39 Aligned_cols=272 Identities=49% Similarity=0.756 Sum_probs=221.4
Q ss_pred ccccccccCCCCCCCCCCCC----CCCchHHHHhhcCeEEcCCCCCcCCCchh-hHHHHhCCCeEEEeecccchhhhhHH
Q 021750 35 FSALKSTLSTTEPIPISHAV----EPEPEPHVAISLEKLFVPPETEVSIDDSS-LSTRILKGSNIVLSKYARDAQVAQAE 109 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~v~~gt~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 109 (308)
+.++++++....++|.++.. ....-.-...|.+..+++..+.+.+.... ...+.+.+.+|.++.-....+.....
T Consensus 39 r~~~~s~~k~~~~~~~~~r~~~~~~~~~f~~~~~a~s~~~i~k~~~~~~~t~~~~~~~v~~~snI~~sPf~~r~qv~~~~ 118 (320)
T KOG2486|consen 39 RKTTKSSLKKKRPYPNKERHNNHLNEIDFKTANDAPSSVDITKSRSIFDVTRKSYRKRVLSGSNIDVSPFLARKQVKSEK 118 (320)
T ss_pred hhcchhhhhcccCCCchhhcccccccCcchhhhcCCchhhcccccCcchhhhHHHHHHhccCCCcccCcccCchhhccce
Confidence 47889999999999888333 22233344555566888888888876665 56678889998887765444455555
Q ss_pred Hhhc--ccCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccC-CCCceEEEEEEEeCCCEEEecCCCcccCCC
Q 021750 110 FVKS--SVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSK-TPGKTQCINHFRINDSWYLVDLPGYGYAAA 186 (308)
Q Consensus 110 f~~s--~~~~~~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~liDtpG~~~~~~ 186 (308)
+..+ +..+.++|..+.+++++.|.+|||||||||.+++.+.....+. .+|.|+.++.+.++.+++++|.||++++..
T Consensus 119 ~V~~~~s~~~~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y 198 (320)
T KOG2486|consen 119 RVHGDGSVTAEDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGY 198 (320)
T ss_pred eeeccccceeccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccC
Confidence 6665 5677788888999999999999999999999999776555554 899999999999999999999999988888
Q ss_pred chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHH-
Q 021750 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLND- 265 (308)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~- 265 (308)
+.++...|.++...|+.++....-+++++|++.+....|...+.|+.+.++|+.+|+||||......+........+..
T Consensus 199 ~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~ 278 (320)
T KOG2486|consen 199 GFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKIN 278 (320)
T ss_pred CccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceee
Confidence 8888889999999999999998889999999999999999899999999999999999999887655433345555555
Q ss_pred HHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 266 FQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 266 ~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
+....+..|....||+.+|+.++.|+++|+-.|.+....|.
T Consensus 279 f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~~~~d 319 (320)
T KOG2486|consen 279 FQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQLRGYWD 319 (320)
T ss_pred hhhccccceeccCCceeeecccccCceeeeeehhhhhcccc
Confidence 66677777777789999999999999999999988776654
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-25 Score=189.33 Aligned_cols=191 Identities=45% Similarity=0.678 Sum_probs=147.0
Q ss_pred hhHHHhhcccCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCC
Q 021750 106 AQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAA 185 (308)
Q Consensus 106 ~~~~f~~s~~~~~~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~ 185 (308)
-++.|++|.....+.+.+..++|+++|.+|||||||+|+|++.++.+.+++.+++|+....+..+.++.+|||||+....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~ 84 (196)
T PRK00454 5 HNAEFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAK 84 (196)
T ss_pred hHHHHHHhhccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcC
Confidence 46778888877777788888999999999999999999999976567788888988877766666789999999976533
Q ss_pred CchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHH
Q 021750 186 APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLND 265 (308)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~ 265 (308)
........+..+...|+..+..++++++++|++.+....+.++..++...++|+++++||+|+.+..+ .....+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~-----~~~~~~~ 159 (196)
T PRK00454 85 VSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGE-----RKKQLKK 159 (196)
T ss_pred CCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHH-----HHHHHHH
Confidence 32222346667778888888777788999999887776666667777777899999999999975432 1122233
Q ss_pred HHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 266 FQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 266 ~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+.+.+... ..+++++||++++|+++++++|.+++++
T Consensus 160 i~~~l~~~---~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 160 VRKALKFG---DDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHhc---CCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 33333321 4789999999999999999999988753
|
|
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-24 Score=178.60 Aligned_cols=159 Identities=21% Similarity=0.336 Sum_probs=134.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
+..+||+|+|.+|||||+|+.+|.+..+...+..+.|.......+.+++ ++.+|||+| |+ +|+.+..
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAG-------QE---RFrtit~ 76 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAG-------QE---RFRTITS 76 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccc-------cH---HHhhhhH
Confidence 4578999999999999999999999887767777888888888888876 689999999 34 8889999
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
+||+.+.+ |++|+|.+...++... ..|+.+ .++|.++|+||||+.+... +..+..+++...+.
T Consensus 77 syYR~ahG---ii~vyDiT~~~SF~~v--~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~----v~~~~a~~fa~~~~-- 145 (205)
T KOG0084|consen 77 SYYRGAHG---IIFVYDITKQESFNNV--KRWIQEIDRYASENVPKLLVGNKCDLTEKRV----VSTEEAQEFADELG-- 145 (205)
T ss_pred hhccCCCe---EEEEEEcccHHHhhhH--HHHHHHhhhhccCCCCeEEEeeccccHhhee----cCHHHHHHHHHhcC--
Confidence 99998887 8999999988777664 556653 5689999999999998765 56777777777775
Q ss_pred hcCCCC-EEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 274 FQTAPP-WIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 274 ~~~~~~-~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+ ++++||+++.|+++.|..|...+....
T Consensus 146 ----~~~f~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 146 ----IPIFLETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred ----CcceeecccCCccCHHHHHHHHHHHHHHhc
Confidence 55 999999999999999999998877654
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-24 Score=176.13 Aligned_cols=153 Identities=30% Similarity=0.401 Sum_probs=112.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.+|+++|.||||||||+|+|++.+ ..++..||+|.... .+.+++ .+.++|+||+..-.... ......++|+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s----~ee~v~~~~l 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS----EEERVARDYL 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSS----HHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCC----cHHHHHHHHH
Confidence 379999999999999999999986 56889999998764 344444 89999999974422111 1223566666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
.. ...|++++|+|++.. ..+..+..++.+.++|+++|+||+|+..... ...+.+.+.+.++ +|+++
T Consensus 75 ~~-~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g-----~~id~~~Ls~~Lg------~pvi~ 140 (156)
T PF02421_consen 75 LS-EKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKG-----IEIDAEKLSERLG------VPVIP 140 (156)
T ss_dssp HH-TSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTT-----EEE-HHHHHHHHT------S-EEE
T ss_pred hh-cCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcC-----CEECHHHHHHHhC------CCEEE
Confidence 53 446889999999863 3445667777788999999999999887553 3445677777775 89999
Q ss_pred eecCCCCCHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHM 298 (308)
Q Consensus 283 vSA~~g~gi~el~~~i 298 (308)
+||++++|+++|++.|
T Consensus 141 ~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 141 VSARTGEGIDELKDAI 156 (156)
T ss_dssp EBTTTTBTHHHHHHHH
T ss_pred EEeCCCcCHHHHHhhC
Confidence 9999999999999875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=183.59 Aligned_cols=162 Identities=25% Similarity=0.297 Sum_probs=125.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeC-CCEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIN-DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
-|+++|+||||||||+|+|++.+ ++++++.|+||+.. ..+..+ .+++++||||+.... ..++. .+.+....
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~K-isIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk--~~l~~---~m~~~a~~ 81 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQK-ISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK--HALGE---LMNKAARS 81 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCc-eEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc--hHHHH---HHHHHHHH
Confidence 59999999999999999999984 69999999999963 233333 389999999998753 22222 25555556
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEe
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 283 (308)
....+|+++||+|+..+....+..+...+...+.|+++++||+|..+.. ..+..+.+.+....+ ...++++
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~--------~~l~~~~~~~~~~~~-f~~ivpi 152 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPK--------TVLLKLIAFLKKLLP-FKEIVPI 152 (298)
T ss_pred HhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcH--------HHHHHHHHHHHhhCC-cceEEEe
Confidence 7778899999999999888888777777776678999999999988643 213444455544433 3589999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 021750 284 SSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 284 SA~~g~gi~el~~~i~~~~~ 303 (308)
||++|.|++.|.+.+.+.+.
T Consensus 153 SA~~g~n~~~L~~~i~~~Lp 172 (298)
T COG1159 153 SALKGDNVDTLLEIIKEYLP 172 (298)
T ss_pred eccccCCHHHHHHHHHHhCC
Confidence 99999999999999988764
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=192.79 Aligned_cols=173 Identities=24% Similarity=0.335 Sum_probs=124.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
.+.++|+++|.+|+|||||+|+|++.+. ..+++.+|+|.+.. .+..++ .+.+|||||+.......+..+.+. . .
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~-~-~ 246 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEER-VIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYS-V-L 246 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCe-eecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHH-H-H
Confidence 3457999999999999999999999764 45678888887643 333444 799999999865332111001111 1 1
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc--CC
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ--TA 277 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 277 (308)
..+.....+|++++|+|++++.+..+..+...+...++|+++|+||+|+.+. .+..+++.+.+...+. ..
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~--------~~~~~~~~~~~~~~~~~~~~ 318 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKD--------EKTREEFKKELRRKLPFLDF 318 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCC--------HHHHHHHHHHHHHhcccCCC
Confidence 1112334456799999999999988888888777788999999999999831 2234444445544333 24
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+++++||++|.|++++++++.+.++.+.
T Consensus 319 ~~vi~~SA~~g~~v~~l~~~i~~~~~~~~ 347 (429)
T TIGR03594 319 APIVFISALTGQGVDKLLDAIDEVYENAN 347 (429)
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 79999999999999999999999887664
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-23 Score=174.96 Aligned_cols=172 Identities=30% Similarity=0.448 Sum_probs=119.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCC-chhhhhchHHHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAA-PRELRTDWDKFTKDY 201 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~-~~~~~~~~~~~~~~~ 201 (308)
...++|+++|.+|||||||+|+|++..+ .+...+++|+....+.++ .+.+|||||+..... .......++.++..|
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~--~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKV--RVGKRPGVTRKPNHYDWG-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCceeeCceEEeec-ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 3457999999999999999999998753 355677888776655554 799999999743211 111123566677777
Q ss_pred HH-hcCCccEEEEEEeCCCCCC-----------hhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHH
Q 021750 202 FL-NRSTLVSVFLLIDASIPAK-----------PIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQEL 269 (308)
Q Consensus 202 ~~-~~~~~~~vl~viD~~~~~~-----------~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 269 (308)
+. ....++++++|+|++.... ..+.++..++...++|+++|+||+|+.... .+..+++.+.
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~-------~~~~~~~~~~ 156 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR-------DEVLDEIAER 156 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH-------HHHHHHHHHH
Confidence 75 5667788999999975321 123344555556789999999999986432 2234455544
Q ss_pred HHh--hh-cCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 270 IQG--FF-QTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 270 ~~~--~~-~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
++. .+ ....+++++||++| |+++++++|.+.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 157 LGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred hcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 431 00 01136899999999 9999999999877653
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-23 Score=174.94 Aligned_cols=156 Identities=20% Similarity=0.227 Sum_probs=115.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
...||+++|..|||||||+.++....+.....++++.......+.+++ .+.+|||+|.. ++..++..
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~----------~~~~l~~~ 74 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG----------RFCTIFRS 74 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHHHH
Confidence 457999999999999999999998765444444555544444455555 57899999953 56667777
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
|++.+ +++++|+|.+++.++.+. ..|+. ..+.|++||+||+|+...+. +..++++.+.+..
T Consensus 75 ~~~~a---d~illVfD~t~~~Sf~~~--~~w~~~i~~~~~~~piilVGNK~DL~~~~~----v~~~~~~~~a~~~----- 140 (189)
T cd04121 75 YSRGA---QGIILVYDITNRWSFDGI--DRWIKEIDEHAPGVPKILVGNRLHLAFKRQ----VATEQAQAYAERN----- 140 (189)
T ss_pred HhcCC---CEEEEEEECcCHHHHHHH--HHHHHHHHHhCCCCCEEEEEECccchhccC----CCHHHHHHHHHHc-----
Confidence 77654 459999999988776654 22332 25799999999999976433 3455666666543
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..++++|||++|.||+++|++|.+.+..
T Consensus 141 -~~~~~e~SAk~g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 141 -GMTFFEVSPLCNFNITESFTELARIVLM 168 (189)
T ss_pred -CCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999999986654
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-22 Score=192.62 Aligned_cols=172 Identities=23% Similarity=0.298 Sum_probs=121.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+|+|++.++ ..+++.+|+|.+. ..+.+++ .+.+|||||+........-...+..+...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~-~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEER-SVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCc-ccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 457999999999999999999999764 4577888888764 3344555 78999999986432111100122222111
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc--CCC
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ--TAP 278 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 278 (308)
.....++++++|+|++++.+..+..+...+...++|+++|+||+|+.+... ...+.+.+...+. ...
T Consensus 289 --~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~---------~~~~~~~i~~~l~~~~~~ 357 (472)
T PRK03003 289 --AAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDR---------RYYLEREIDRELAQVPWA 357 (472)
T ss_pred --HHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhH---------HHHHHHHHHHhcccCCCC
Confidence 112345679999999999888888777777778999999999999975321 1122222222111 247
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLRNYWLK 307 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~~~~~ 307 (308)
+++++||++|.|++++|+.+.+.++.+.+
T Consensus 358 ~~~~~SAk~g~gv~~lf~~i~~~~~~~~~ 386 (472)
T PRK03003 358 PRVNISAKTGRAVDKLVPALETALESWDT 386 (472)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999887653
|
|
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=174.32 Aligned_cols=156 Identities=18% Similarity=0.242 Sum_probs=114.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
.|+++|..|||||||++++..+.+.....++.+.......+.+++ .+.+|||+|.. +++.++..|++
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe----------~~~~l~~~y~~ 71 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQE----------RFNSITSAYYR 71 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCch----------hhHHHHHHHhc
Confidence 589999999999999999999876554455555555555566655 57899999943 56678888887
Q ss_pred hcCCccEEEEEEeCCCCCChhHHH-HHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLE-YASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPP 279 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~-l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (308)
.+++ +++|+|.++..++.+.. +...+. ..+.|+++|+||+|+...++ +..+..+++.+.+. ...
T Consensus 72 ~ad~---iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~----v~~~~~~~~a~~~~-----~~~ 139 (202)
T cd04120 72 SAKG---IILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDRE----ISRQQGEKFAQQIT-----GMR 139 (202)
T ss_pred CCCE---EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccc----cCHHHHHHHHHhcC-----CCE
Confidence 6554 89999999887766542 122222 25799999999999975433 34444555544331 267
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 280 WIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 280 ~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
++++||++|+||+++|+++.+.+..
T Consensus 140 ~~etSAktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 140 FCEASAKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987643
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=169.34 Aligned_cols=161 Identities=21% Similarity=0.238 Sum_probs=131.4
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHH
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKF 197 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 197 (308)
+.+..+||+++|.+|||||+|+-++..+.+......+.|.......+..++ .+.+|||.|. + +|+.+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQ-------e---rf~ti 77 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQ-------E---RFRTI 77 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccc-------h---hHHHH
Confidence 345678999999999999999999999876555555667777777777776 5889999994 4 78889
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCCChhHHH-HHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 198 TKDYFLNRSTLVSVFLLIDASIPAKPIDLE-YASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~viD~~~~~~~~~~~-l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
...||+.+.+ +++|+|.++..++.+.. +.+++. ..++|.++|+||+|+...+. +..+..+.++..++
T Consensus 78 ~~sYyrgA~g---i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~----V~~e~ge~lA~e~G-- 148 (207)
T KOG0078|consen 78 TTAYYRGAMG---ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQ----VSKERGEALAREYG-- 148 (207)
T ss_pred HHHHHhhcCe---eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccccc----ccHHHHHHHHHHhC--
Confidence 9999998887 89999999887777642 233332 25899999999999998665 67888888888875
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.+++++||++|.||++.|..|.+.+..
T Consensus 149 ----~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 149 ----IKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred ----CeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999999887764
|
|
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=167.30 Aligned_cols=152 Identities=20% Similarity=0.296 Sum_probs=109.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||++++++.++.....++.+.......+..++ .+.+|||||.. ++..++..++
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~ 72 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE----------RFRAVTRSYY 72 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHHHHh
Confidence 6899999999999999999999866444444444444444445554 57899999943 4555677776
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+.+ +++++|+|.+++.++... ..|+. ..+.|+++|+||+|+..... +..+...++.+..
T Consensus 73 ~~~---~~~ilv~d~~~~~s~~~~--~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~----~~~~~~~~~~~~~------ 137 (166)
T cd04122 73 RGA---AGALMVYDITRRSTYNHL--SSWLTDARNLTNPNTVIFLIGNKADLEAQRD----VTYEEAKQFADEN------ 137 (166)
T ss_pred cCC---CEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCeEEEEEECcccccccC----cCHHHHHHHHHHc------
Confidence 654 459999999987665443 23332 25689999999999976543 2344455554432
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+++++||++|+|++++|.++.+.+
T Consensus 138 ~~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 138 GLLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999988655
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=167.95 Aligned_cols=156 Identities=14% Similarity=0.191 Sum_probs=110.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++.+.++.....++.+... ...+.+++ .+.+|||||.. ++..++..|+
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~----------~~~~l~~~~~ 71 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQA----------EFTAMRDQYM 71 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCch----------hhHHHhHHHh
Confidence 5899999999999999999998866433333433222 22334444 58899999953 4556777777
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH-HHHHh----ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE-YASWL----GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~-l~~~~----~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
... +++++|+|.++..++.... +..++ ...++|+++|+||+|+.+... +..+....+.+.. .
T Consensus 72 ~~~---d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~----v~~~~~~~~a~~~------~ 138 (172)
T cd04141 72 RCG---EGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ----VTTEEGRNLAREF------N 138 (172)
T ss_pred hcC---CEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc----cCHHHHHHHHHHh------C
Confidence 654 4589999999887776542 22222 235799999999999875432 3444555554433 3
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
+++++|||++|.||+++|++|.+.+.+.
T Consensus 139 ~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 139 CPFFETSAALRHYIDDAFHGLVREIRRK 166 (172)
T ss_pred CEEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 7899999999999999999999776543
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-23 Score=188.71 Aligned_cols=158 Identities=27% Similarity=0.340 Sum_probs=123.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+.|+|+|+||||||||.|+|++.+ .+++++.||+|++. ....+.+ .|.++||+|+..... .++... +..+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r-~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~-~~l~~~---i~~Qa~ 78 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRR-IAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE-DELQEL---IREQAL 78 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCe-eeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc-hHHHHH---HHHHHH
Confidence 579999999999999999999975 59999999999985 3344444 799999999864331 222222 444555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
.....+|+++||+|+..+.+..|.++..++...++|+++|+||+|-.+. ++...+ .+.-. .-.+++
T Consensus 79 ~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~--------e~~~~e---fyslG---~g~~~~ 144 (444)
T COG1160 79 IAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA--------EELAYE---FYSLG---FGEPVP 144 (444)
T ss_pred HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh--------hhhHHH---HHhcC---CCCceE
Confidence 5566677899999999999999999999999888999999999997632 222222 23222 257899
Q ss_pred eecCCCCCHHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~ 302 (308)
+||..|.|+.+|++.+.+.+
T Consensus 145 ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 145 ISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred eehhhccCHHHHHHHHHhhc
Confidence 99999999999999999875
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=186.53 Aligned_cols=171 Identities=23% Similarity=0.305 Sum_probs=124.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|+|||||+|+|++.+. ..+++.+|+|++.. .+..++ .+.++||||+.......+..+.+. ...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~--~~~ 248 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEER-VIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYS--VIR 248 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHH--HHH
Confidence 457999999999999999999998764 56788889988753 333444 799999999865332221001111 111
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc--CCC
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ--TAP 278 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 278 (308)
.+.....+|++++|+|++.+.+..+..+..++...++|+++|+||||+.+.. ..+++.+.+...+. ...
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~---------~~~~~~~~~~~~l~~~~~~ 319 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEK---------TMEEFKKELRRRLPFLDYA 319 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHH---------HHHHHHHHHHHhcccccCC
Confidence 1223344577999999999999888888888877899999999999997422 23334444433222 347
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
+++++||++|.|++++++.+.+.++.+.
T Consensus 320 ~i~~~SA~~~~gv~~l~~~i~~~~~~~~ 347 (435)
T PRK00093 320 PIVFISALTGQGVDKLLEAIDEAYENAN 347 (435)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999887765
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-22 Score=163.75 Aligned_cols=169 Identities=48% Similarity=0.759 Sum_probs=127.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRS 206 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (308)
+|+++|.+|+|||||+|+|++.......+..++.|.....+..+..++++||||+............+......|+....
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE 80 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence 58999999999999999999655556677888888777777777799999999987643333333356667777887777
Q ss_pred CccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecC
Q 021750 207 TLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSV 286 (308)
Q Consensus 207 ~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~ 286 (308)
.++++++++|..........++..|+...+.|+++|+||+|+....+ .......+...+.. .....+++++||+
T Consensus 81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~-----~~~~~~~~~~~l~~-~~~~~~~~~~Sa~ 154 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSE-----LAKALKEIKKELKL-FEIDPPIILFSSL 154 (170)
T ss_pred hhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHH-----HHHHHHHHHHHHHh-ccCCCceEEEecC
Confidence 77789999999877666666778888888899999999999864322 12222233333321 1234789999999
Q ss_pred CCCCHHHHHHHHHHH
Q 021750 287 TNQGRDEILLHMAQL 301 (308)
Q Consensus 287 ~g~gi~el~~~i~~~ 301 (308)
++.|+.+++++|.++
T Consensus 155 ~~~~~~~l~~~l~~~ 169 (170)
T cd01876 155 KGQGIDELRALIEKW 169 (170)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999999875
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-22 Score=165.81 Aligned_cols=154 Identities=18% Similarity=0.246 Sum_probs=105.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++++.+.+.....++.+... ...+..++ .+.+|||||.. ++..++..++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~ 70 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE----------QFTAMRDLYM 70 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcc----------cchhHHHHHH
Confidence 5899999999999999999998755433333333222 23344444 46789999953 4555777777
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HH----HHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EY----ASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l----~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..+++ +++|+|.++..+..+. ++ .......+.|+++|+||+|+..... +..+..+.+.+.++
T Consensus 71 ~~~d~---~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~------ 137 (164)
T cd04175 71 KNGQG---FVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV----VGKEQGQNLARQWG------ 137 (164)
T ss_pred hhCCE---EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccE----EcHHHHHHHHHHhC------
Confidence 76554 8999999876554432 11 1112235799999999999976432 12333444443332
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.+++++||++|.|++++|+++.+.+.
T Consensus 138 ~~~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 138 CAFLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred CEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence 68999999999999999999987654
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-22 Score=171.66 Aligned_cols=158 Identities=18% Similarity=0.250 Sum_probs=111.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-C---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-D---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
+||+++|.+|||||||+++|++..+.....++.+.......+.++ + .+.+|||||.. .+..+++.|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~----------~~~~~~~~~ 70 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE----------RFGGMTRVY 70 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCch----------hhhhhHHHH
Confidence 489999999999999999999976544444444444444455554 3 57899999952 455577777
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHH-----HHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLE-----YASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~-----l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
+..++ ++++|+|.+++.+..... +..... ..++|+++|+||+|+.+... +..+.++++.+..+
T Consensus 71 ~~~a~---~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~----~~~~~~~~~~~~~~-- 141 (201)
T cd04107 71 YRGAV---GAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA----KDGEQMDQFCKENG-- 141 (201)
T ss_pred hCCCC---EEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc----cCHHHHHHHHHHcC--
Confidence 76554 589999999876655431 111111 25789999999999974322 24455555554432
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
..+++++||++|.|++++|++|.+.+...
T Consensus 142 ---~~~~~e~Sak~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 142 ---FIGWFETSAKEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred ---CceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 25799999999999999999999877554
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-22 Score=166.09 Aligned_cols=153 Identities=17% Similarity=0.241 Sum_probs=106.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||++++.+.++.....++.+.+.....+..++ .+.+|||||.. ++..++..++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~----------~~~~~~~~~~ 71 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE----------RYRTITTAYY 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH----------HHHHHHHHHc
Confidence 5899999999999999999999876444444444444333443333 58899999953 3444555555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+. ++++++|+|.++..+.... ..|+. ....|+++|+||+|+.+.+. +..+....+.+.+
T Consensus 72 ~~---~~~~l~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~------ 136 (165)
T cd01865 72 RG---AMGFILMYDITNEESFNAV--QDWSTQIKTYSWDNAQVILVGNKCDMEDERV----VSSERGRQLADQL------ 136 (165)
T ss_pred cC---CcEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCCEEEEEECcccCcccc----cCHHHHHHHHHHc------
Confidence 44 4558999999876544432 33332 14689999999999976432 1234444444433
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++++||++|.|++++|+++.+.+.
T Consensus 137 ~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 137 GFEFFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 257999999999999999999988654
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-23 Score=169.81 Aligned_cols=156 Identities=20% Similarity=0.251 Sum_probs=123.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..+||+|+|..|||||||+-|+..++|.....++.|..+....+.+++ ++.+|||+|.. +|..+...
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQE----------Ry~slapM 73 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQE----------RYHSLAPM 73 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcc----------cccccccc
Confidence 346999999999999999999999988666677777777666666665 68899999953 56678888
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
||+.+.. +++|+|.++..++... ..|+.+ .++-+.+|+||+||...++ +..++.+.+.+..+
T Consensus 74 YyRgA~A---AivvYDit~~~SF~~a--K~WvkeL~~~~~~~~vialvGNK~DL~~~R~----V~~~ea~~yAe~~g--- 141 (200)
T KOG0092|consen 74 YYRGANA---AIVVYDITDEESFEKA--KNWVKELQRQASPNIVIALVGNKADLLERRE----VEFEEAQAYAESQG--- 141 (200)
T ss_pred eecCCcE---EEEEEecccHHHHHHH--HHHHHHHHhhCCCCeEEEEecchhhhhhccc----ccHHHHHHHHHhcC---
Confidence 9988876 7999999987776653 445442 3444667999999998654 46667777777654
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..||++||++|.|++++|..|.+.+-.
T Consensus 142 ---ll~~ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 142 ---LLFFETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred ---CEEEEEecccccCHHHHHHHHHHhccC
Confidence 789999999999999999999987643
|
|
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-22 Score=164.98 Aligned_cols=154 Identities=21% Similarity=0.290 Sum_probs=110.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||++++.+.++.....++.+.+.....+..++ .+.+|||||.. .+...+..+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~----------~~~~~~~~~ 72 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE----------RFRTITTAY 72 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchH----------HHHHHHHHH
Confidence 46999999999999999999999876555556666555545555554 57899999943 344455565
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
+.. ++++++|+|.+++.+..+. ..|+. ..+.|+++|+||+|+.+... +..+....+.+..
T Consensus 73 ~~~---ad~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~----~~~~~~~~~~~~~----- 138 (167)
T cd01867 73 YRG---AMGIILVYDITDEKSFENI--RNWMRNIEEHASEDVERMLVGNKCDMEEKRV----VSKEEGEALADEY----- 138 (167)
T ss_pred hCC---CCEEEEEEECcCHHHHHhH--HHHHHHHHHhCCCCCcEEEEEECcccccccC----CCHHHHHHHHHHc-----
Confidence 544 4569999999877655443 23332 25789999999999986432 2333344444333
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++++||++|.|++++|+++.+.+.
T Consensus 139 -~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 165 (167)
T cd01867 139 -GIKFLETSAKANINVEEAFFTLAKDIK 165 (167)
T ss_pred -CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 268999999999999999999998764
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-22 Score=162.98 Aligned_cols=152 Identities=20% Similarity=0.285 Sum_probs=104.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++|+++++.....++.+... ...+.+++ .+.+|||||.. ++..++..|+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~----------~~~~l~~~~~ 70 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE----------EYSAMRDQYM 70 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCc----------chHHHHHHHH
Confidence 5899999999999999999998765433333333222 23334444 36789999953 4556777777
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..++ ++++|+|.++..+..+. .+..+....++|+++|+||+|+.... ........+.+.. .
T Consensus 71 ~~~~---~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----~~~~~~~~~~~~~------~ 136 (162)
T cd04138 71 RTGE---GFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAART-----VSSRQGQDLAKSY------G 136 (162)
T ss_pred hcCC---EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccce-----ecHHHHHHHHHHh------C
Confidence 6554 48899998876544332 12222223578999999999997532 1333444444333 2
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+++++||++|.|++++|+++.+.+
T Consensus 137 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 137 IPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999998654
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-22 Score=164.66 Aligned_cols=154 Identities=18% Similarity=0.231 Sum_probs=106.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++++.++.....++.+.......+..++ .+.+|||||.. .+..++..++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~ 70 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP----------EYLEVRNEFY 70 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccH----------HHHHHHHHHh
Confidence 3899999999999999999999876554445555444444454443 68899999953 3444666666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-----HHHHHhcc----CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQ----NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
..+ +++++|+|.+++.+.... ++..+... .+.|+++|+||+|+..... ...+....+.+..
T Consensus 71 ~~~---d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~--- 140 (168)
T cd04119 71 KDT---QGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA----VSEDEGRLWAESK--- 140 (168)
T ss_pred ccC---CEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccc----cCHHHHHHHHHHc---
Confidence 544 458999999976554332 11222221 4689999999999974321 1333343433322
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+++++||++|.|+++++++|.+.+
T Consensus 141 ---~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 141 ---GFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred ---CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 26799999999999999999998764
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=164.49 Aligned_cols=155 Identities=21% Similarity=0.296 Sum_probs=131.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...+|+.++|+.|||||+|+.+++.+.|.+....+.|.......+.+++ ++.+|||.|. + .|++..+
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGq-------e---~frsv~~ 73 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQ-------E---SFRSVTR 73 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCc-------H---HHHHHHH
Confidence 4567999999999999999999999998888888888888778888877 6899999994 3 7888999
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
.||+.+.+ +++|+|.+...++..+ ..|+. ..+.-+++++||+||...++ +..++.+.|++...
T Consensus 74 syYr~a~G---alLVydit~r~sF~hL--~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~----Vs~EEGeaFA~ehg-- 142 (216)
T KOG0098|consen 74 SYYRGAAG---ALLVYDITRRESFNHL--TSWLEDARQHSNENMVIMLIGNKSDLEARRE----VSKEEGEAFAREHG-- 142 (216)
T ss_pred HHhccCcc---eEEEEEccchhhHHHH--HHHHHHHHHhcCCCcEEEEEcchhhhhcccc----ccHHHHHHHHHHcC--
Confidence 99999888 7999999988887664 44543 25788999999999998775 67889999988864
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..++++||++++|++|.|......+
T Consensus 143 ----LifmETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 143 ----LIFMETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred ----ceeehhhhhhhhhHHHHHHHHHHHH
Confidence 7789999999999999998876544
|
|
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-22 Score=164.93 Aligned_cols=153 Identities=20% Similarity=0.309 Sum_probs=107.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||++++++.++.....++.+.+.....+..++ .+.+|||||.. ++...+..++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~ 72 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE----------RFRTITSSYY 72 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH----------hHHHHHHHHh
Confidence 6899999999999999999998765443334444444444454444 58899999943 4445666666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
..+ +++++|+|.++..+..+. ..|+. ..+.|+++|+||+|+..... +..+....+.+..
T Consensus 73 ~~~---~~ii~v~d~~~~~s~~~l--~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----~~~~~~~~~~~~~------ 137 (166)
T cd01869 73 RGA---HGIIIVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGNKCDLTDKRV----VDYSEAQEFADEL------ 137 (166)
T ss_pred CcC---CEEEEEEECcCHHHHHhH--HHHHHHHHHhCCCCCcEEEEEEChhcccccC----CCHHHHHHHHHHc------
Confidence 544 559999999886554442 22332 14689999999999875432 2334445544433
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++++||++|+|++++|++|.+.+.
T Consensus 138 ~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 138 GIPFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred CCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence 368999999999999999999988764
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-22 Score=164.82 Aligned_cols=153 Identities=18% Similarity=0.262 Sum_probs=102.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++++.+.+.....++.+. .....+..++ .+.+|||||.. ++..++..|+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~ 70 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQIEVDGQQCMLEILDTAGTE----------QFTAMRDLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCcc----------ccchHHHHHh
Confidence 58999999999999999999987653322222221 1223344444 46789999953 4445666666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HHHHHh----ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EYASWL----GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~----~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..++ ++++|+|.++..+..+. .+...+ ...++|+++|+||+|+...+. +..+....+.+.+ .
T Consensus 71 ~~~~---~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~------~ 137 (163)
T cd04136 71 KNGQ---GFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERV----VSREEGQALARQW------G 137 (163)
T ss_pred hcCC---EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccce----ecHHHHHHHHHHc------C
Confidence 6544 48999999876655432 122222 225799999999999975332 1233333333322 2
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+++++||++|.|++++|+++.+.+
T Consensus 138 ~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 138 CPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhc
Confidence 7899999999999999999998754
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-22 Score=179.23 Aligned_cols=160 Identities=19% Similarity=0.167 Sum_probs=110.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE-EE-Ee-CCCEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN-HF-RI-NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~-~~-~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
+|+++|.||||||||+|+|++.+ .+.+++.+++|+... .+ .. +.++.++||||+.... ..+. ..+.+.+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~-~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~--~~l~---~~~~~~~~~ 75 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQK-ISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK--HSLN---RLMMKEARS 75 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc-EeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc--chHH---HHHHHHHHH
Confidence 69999999999999999999975 367888999887632 22 22 2379999999986532 1111 112222333
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEe
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 283 (308)
....+|++++|+|++...... ..+..++...++|+++|+||+|+.... ...+.+ ..+..... ..+++++
T Consensus 76 ~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~--------~~~~~~-~~~~~~~~-~~~v~~i 144 (270)
T TIGR00436 76 AIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKD--------KLLPLI-DKYAILED-FKDIVPI 144 (270)
T ss_pred HHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHH--------HHHHHH-HHHHhhcC-CCceEEE
Confidence 345667799999999765554 345556666789999999999997422 112222 22222211 2479999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 021750 284 SSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 284 SA~~g~gi~el~~~i~~~~~ 303 (308)
||++|.|+++++++|.+.+.
T Consensus 145 SA~~g~gi~~L~~~l~~~l~ 164 (270)
T TIGR00436 145 SALTGDNTSFLAAFIEVHLP 164 (270)
T ss_pred ecCCCCCHHHHHHHHHHhCC
Confidence 99999999999999988654
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-22 Score=164.04 Aligned_cols=153 Identities=24% Similarity=0.327 Sum_probs=108.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
..||+++|.+|||||||++++++.++.....++.+.+.....+..++ .+.+|||||.. ++..++..+
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~ 72 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE----------RYRAITSAY 72 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChH----------HHHHHHHHH
Confidence 46999999999999999999999876545556666555455555554 57899999953 445566666
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
+..+ +++++|+|.++..+..+. ..|+. ..++|+++|+||+|+...+. +..+....+....
T Consensus 73 ~~~~---~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~----~~~~~~~~~~~~~----- 138 (165)
T cd01868 73 YRGA---VGALLVYDITKKQTFENV--ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----VPTEEAKAFAEKN----- 138 (165)
T ss_pred HCCC---CEEEEEEECcCHHHHHHH--HHHHHHHHHhCCCCCeEEEEEECcccccccc----CCHHHHHHHHHHc-----
Confidence 6543 458999999876555443 23333 13589999999999876432 2333444443321
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+++++||++|.|+++++++|.+.+
T Consensus 139 -~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 139 -GLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred -CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999988654
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-22 Score=184.49 Aligned_cols=157 Identities=27% Similarity=0.312 Sum_probs=120.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
+++++|.||||||||+|+|++.+. +++++.||||+++ ..+.+++ .+.++||+|+++.....|. . -......
T Consensus 219 kvvIiG~PNvGKSSLLNaL~~~d~-AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~---i--GIeRs~~ 292 (454)
T COG0486 219 KVVIIGRPNVGKSSLLNALLGRDR-AIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVER---I--GIERAKK 292 (454)
T ss_pred eEEEECCCCCcHHHHHHHHhcCCc-eEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHH---H--HHHHHHH
Confidence 999999999999999999999876 8999999999997 4566677 8999999999875443331 0 1122223
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEe
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 283 (308)
....+|+|++|+|++.+....+..+.. ....++|+++|.||+|+..... ...+ .+ ....+++.+
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~---------~~~~--~~----~~~~~~i~i 356 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIE---------LESE--KL----ANGDAIISI 356 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccc---------cchh--hc----cCCCceEEE
Confidence 445567799999999987777766555 4456899999999999987532 1121 11 123579999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHH
Q 021750 284 SSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 284 SA~~g~gi~el~~~i~~~~~~~ 305 (308)
||++|+|+++|.+.|.+.+...
T Consensus 357 Sa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 357 SAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EecCccCHHHHHHHHHHHHhhc
Confidence 9999999999999999887653
|
|
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.5e-22 Score=165.96 Aligned_cols=154 Identities=20% Similarity=0.270 Sum_probs=109.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-------------CCEEEecCCCcccCCCchhhh
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-------------DSWYLVDLPGYGYAAAPRELR 191 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-------------~~~~liDtpG~~~~~~~~~~~ 191 (308)
..||+++|.+|||||||++++++..+.....++.+.+.....+.+. -.+.+|||||..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------- 74 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE--------- 74 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH---------
Confidence 4699999999999999999999987654444454444433333322 157899999942
Q ss_pred hchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-------cCCCCEEEEeecCCCCCcccCCCCCchhhHH
Q 021750 192 TDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLN 264 (308)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~ 264 (308)
++..++..+++.+ +++++|+|.++..+..+. ..|+. ..+.|+++|+||+|+.+... +..+..+
T Consensus 75 -~~~~~~~~~~~~~---~~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----v~~~~~~ 144 (180)
T cd04127 75 -RFRSLTTAFFRDA---MGFLLIFDLTNEQSFLNV--RNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ----VSEEQAK 144 (180)
T ss_pred -HHHHHHHHHhCCC---CEEEEEEECCCHHHHHHH--HHHHHHHHHhcCCCCCcEEEEEeCccchhcCc----cCHHHHH
Confidence 4556677776544 459999999987665553 22322 24689999999999976432 2344455
Q ss_pred HHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 265 DFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++.+.++ .+++++||++|.|++++|++|.+.+-
T Consensus 145 ~~~~~~~------~~~~e~Sak~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 145 ALADKYG------IPYFETSAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred HHHHHcC------CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5555442 68999999999999999999987653
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-21 Score=194.27 Aligned_cols=172 Identities=26% Similarity=0.306 Sum_probs=121.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+|+|++.+. ..++..+|+|.+. ..+.+++ .+.+|||||+........-...+..+..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~-~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~- 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEER-AVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRT- 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc-cccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHH-
Confidence 457999999999999999999999864 4567888888764 2344454 7889999998643211110001111111
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh--cCCC
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF--QTAP 278 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 278 (308)
......++++++|+|++.+.+..+..+...+...++|+++|+||||+.+.. ..+.+.+.+...+ ....
T Consensus 527 -~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~---------~~~~~~~~~~~~l~~~~~~ 596 (712)
T PRK09518 527 -QAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEF---------RRQRLERLWKTEFDRVTWA 596 (712)
T ss_pred -HHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChh---------HHHHHHHHHHHhccCCCCC
Confidence 122344567999999999988888777776666789999999999997532 1233333333322 1346
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLRNYWLK 307 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~~~~~ 307 (308)
+++++||++|.|++++++.+.+.+.++.+
T Consensus 597 ~ii~iSAktg~gv~~L~~~i~~~~~~~~~ 625 (712)
T PRK09518 597 RRVNLSAKTGWHTNRLAPAMQEALESWDQ 625 (712)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 88999999999999999999999887654
|
|
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-22 Score=163.05 Aligned_cols=155 Identities=16% Similarity=0.246 Sum_probs=104.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||++++++..+.....++.+.. .......++ .+.+|||||.. ++..++..++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~----------~~~~~~~~~~ 69 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS-YRKQIEIDGEVCLLDILDTAGQE----------EFSAMRDQYM 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCcc----------cchHHHHHHH
Confidence 389999999999999999999876533333322211 122333433 57789999954 3445666666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-H----HHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-E----YASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~----l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..++ ++++|+|+++..+.... . +.......++|+++|+||+|+..... ...+....+.+.. .
T Consensus 70 ~~~~---~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~----~~~~~~~~~~~~~------~ 136 (164)
T smart00173 70 RTGE---GFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERV----VSTEEGKELARQW------G 136 (164)
T ss_pred hhCC---EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccce----EcHHHHHHHHHHc------C
Confidence 6554 48999999876554432 1 12222235789999999999976432 1233344444333 2
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.+++++||++|.|++++|++|.+.+..
T Consensus 137 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 163 (164)
T smart00173 137 CPFLETSAKERVNVDEAFYDLVREIRK 163 (164)
T ss_pred CEEEEeecCCCCCHHHHHHHHHHHHhh
Confidence 789999999999999999999887653
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-21 Score=162.94 Aligned_cols=155 Identities=19% Similarity=0.248 Sum_probs=107.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||++++.+..+......+.+.......+.+++ .+.+|||||.. .+..+...+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~~ 72 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQE----------RFRTITQSY 72 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChH----------HHHHHHHHH
Confidence 46999999999999999999998765443344444444445555555 67899999942 455566666
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHH---hccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASW---LGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~---~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+..+ +++++|+|++++.+.... .+... ....+.|+++|+||+|+...++ +..+....+.+..+ .
T Consensus 73 ~~~~---d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~-----~ 140 (165)
T cd01864 73 YRSA---NGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQRE----VLFEEACTLAEKNG-----M 140 (165)
T ss_pred hccC---CEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccc----cCHHHHHHHHHHcC-----C
Confidence 6544 558999999987655442 11111 1235789999999999976432 22334444444322 2
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
..++++||++|.|++++++++.+.
T Consensus 141 ~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 141 LAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999864
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=161.07 Aligned_cols=153 Identities=17% Similarity=0.262 Sum_probs=102.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++++..+.....++.+.. ......+++ .+.+|||||.. ++..++..++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~ 71 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQE----------EFSAMREQYM 71 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCc----------chhHHHHHHH
Confidence 599999999999999999999875432222222211 122333444 57889999953 4455677777
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..++ ++++|+|.++..+.... .+.......+.|+++|+||+|+..... +..+....+.+.. .
T Consensus 72 ~~~~---~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~----~~~~~~~~~~~~~------~ 138 (164)
T cd04145 72 RTGE---GFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRK----VSREEGQELARKL------K 138 (164)
T ss_pred hhCC---EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccce----ecHHHHHHHHHHc------C
Confidence 6554 48999999876554432 122222235789999999999975432 1223333333322 3
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+++++||++|.|++++|++|.+.+
T Consensus 139 ~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 139 IPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred CcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 6899999999999999999998764
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.1e-22 Score=162.91 Aligned_cols=151 Identities=21% Similarity=0.317 Sum_probs=107.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+++++++++.....++.+.......+..++ .+.+|||+|.. ++..++..++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~----------~~~~~~~~~~ 70 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE----------RYQTITKQYY 70 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH----------hHHhhHHHHh
Confidence 3799999999999999999999876444444444444444555554 57899999943 3445666666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
... +++++|+|.++..++.+. ..|+. ..+.|+++|+||+|+.+.+. +..++...+.+.++
T Consensus 71 ~~~---~~~i~v~d~~~~~sf~~~--~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----v~~~~~~~~~~~~~----- 136 (161)
T cd04117 71 RRA---QGIFLVYDISSERSYQHI--MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----VGDEQGNKLAKEYG----- 136 (161)
T ss_pred cCC---cEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCeEEEEEECcccccccC----CCHHHHHHHHHHcC-----
Confidence 544 458999999987665543 23332 24689999999999976543 23445555554432
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
++++++||++|.|++++|++|.++
T Consensus 137 -~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 137 -MDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred -CEEEEEeCCCCCCHHHHHHHHHhh
Confidence 689999999999999999999865
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=162.50 Aligned_cols=155 Identities=21% Similarity=0.313 Sum_probs=110.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..+||+++|.+|||||||++++++.++.....++.+.+.....+..++ .+.+|||||.. ++..+...
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 72 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE----------SFRSITRS 72 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHHH
Confidence 346999999999999999999999875444455556555545555554 68899999942 44556666
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
++..+ +++++|+|++++.+..+. ..|+. ..+.|+++|+||+|+..... +..+..+.+....
T Consensus 73 ~~~~~---d~il~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----~~~~~~~~~~~~~---- 139 (168)
T cd01866 73 YYRGA---AGALLVYDITRRETFNHL--TSWLEDARQHSNSNMTIMLIGNKCDLESRRE----VSYEEGEAFAKEH---- 139 (168)
T ss_pred HhccC---CEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCcEEEEEECcccccccC----CCHHHHHHHHHHc----
Confidence 66543 458999999976555443 34442 24789999999999975332 2334444443332
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++++||++++|++++|.++.+.+.
T Consensus 140 --~~~~~e~Sa~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 140 --GLIFMETSAKTASNVEEAFINTAKEIY 166 (168)
T ss_pred --CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999987763
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=162.38 Aligned_cols=152 Identities=18% Similarity=0.212 Sum_probs=101.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||+++++++.+.....++.+.+. ...+..+. .+.+|||||.. ++..+...++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~ 70 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSH----------QFPAMQRLSI 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCC----------cchHHHHHHh
Confidence 5899999999999999999999865433333333222 22222222 57899999964 3444555555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HHHHHhcc------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EYASWLGQ------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~~------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
..+ +++++|+|.++..+.... .+..++.. .++|+++|+||+|+....+ +..+....+....
T Consensus 71 ~~~---~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----v~~~~~~~~~~~~----- 138 (165)
T cd04140 71 SKG---HAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE----VSSNEGAACATEW----- 138 (165)
T ss_pred hcC---CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCe----ecHHHHHHHHHHh-----
Confidence 544 458999999987765443 22222221 5789999999999975332 1223333333222
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
.++++++||++|+|++++|++|.++
T Consensus 139 -~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 139 -NCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred -CCcEEEeecCCCCCHHHHHHHHHhc
Confidence 3689999999999999999999764
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=179.80 Aligned_cols=162 Identities=21% Similarity=0.262 Sum_probs=114.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
..+|+++|.+|||||||+|+|++.+. +.+++.+++|+.. ..+..++ ++.+|||||+.+... .+. ..+.+..
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~-~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~--~l~---~~~~r~~ 125 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKL-SIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKG--SLE---KAMVRCA 125 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCce-eeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcc--cHH---HHHHHHH
Confidence 35999999999999999999998754 6678888888753 3344444 899999999854221 111 1133333
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
......+|++++|+|+.......+..+...+...+.|.++|+||+|+.... ..++.+.+.... ....+|
T Consensus 126 ~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~----------~~~~~~~l~~~~-~~~~i~ 194 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKY----------LNDIKAFLTENH-PDSLLF 194 (339)
T ss_pred HHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcccc----------HHHHHHHHHhcC-CCcEEE
Confidence 333456677999999987666655555666666678889999999986421 233334443221 235799
Q ss_pred EeecCCCCCHHHHHHHHHHHHH
Q 021750 282 MTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++||++|.|+++++++|.+.+.
T Consensus 195 ~iSAktg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 195 PISALSGKNIDGLLEYITSKAK 216 (339)
T ss_pred EEeccCccCHHHHHHHHHHhCC
Confidence 9999999999999999988653
|
|
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=162.43 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=104.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++++.++.+...++.+.+........++ .+.+|||||.. .+..++..|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~ 70 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE----------RFQTMHASYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCch----------hhhhhhHHHh
Confidence 4899999999999999999998765443333333333333334443 57899999953 4555666766
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HHHHHhcc--CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EYASWLGQ--NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPP 279 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~~--~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (308)
..+ +++++|+|.+++.+..+. .+...+.. .++|+++|+||+|+... ..+....+.+. ...+
T Consensus 71 ~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~------~~~~ 134 (161)
T cd04124 71 HKA---HACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS-------VTQKKFNFAEK------HNLP 134 (161)
T ss_pred CCC---CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh-------HHHHHHHHHHH------cCCe
Confidence 654 458999999877665443 22222222 47999999999998532 11112222221 1368
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 280 WIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 280 ~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
++++||++|.|++++|+.+.+.+-++
T Consensus 135 ~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 135 LYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999876554
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=166.36 Aligned_cols=156 Identities=13% Similarity=0.216 Sum_probs=105.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
||+++|.+|||||||+++|+.+.+.....++.+... ......++ .+.+|||||.. ++..+...|+.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~~ 69 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQE----------EYTALRDQWIR 69 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCch----------hhHHHHHHHHH
Confidence 689999999999999999998765332223322221 22333444 47889999953 45556777777
Q ss_pred hcCCccEEEEEEeCCCCCChhHH-HHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL-EYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
.++ ++++|+|.++..++... .+...+. ..+.|+++|+||+|+..... +.......+.+.+
T Consensus 70 ~ad---~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~----v~~~~~~~~~~~~------ 136 (190)
T cd04144 70 EGE---GFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYERE----VSTEEGAALARRL------ 136 (190)
T ss_pred hCC---EEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCc----cCHHHHHHHHHHh------
Confidence 655 48999999887655442 1222121 14689999999999975432 2333344443333
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
..+++++||++|.|++++|+++.+.+...+
T Consensus 137 ~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~ 166 (190)
T cd04144 137 GCEFIEASAKTNVNVERAFYTLVRALRQQR 166 (190)
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 268999999999999999999998776544
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=166.96 Aligned_cols=165 Identities=12% Similarity=0.094 Sum_probs=104.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++++.++.....++.+.......+.+++ .+.+|||||...... ..+.++......+
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~--~~~~e~~~~~~~~- 77 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPG--TAGQEWMDPRFRG- 77 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCc--cchhHHHHHHHhh-
Confidence 3899999999999999999999876433333332222223344455 477999999753211 1111222222222
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
...+|++++|+|.+++.+.... .+...+. ..++|+++|+||+|+...+. +..+.++.+.+..
T Consensus 78 --~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~----~~~~~~~~~~~~~----- 146 (198)
T cd04142 78 --LRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRF----APRHVLSVLVRKS----- 146 (198)
T ss_pred --hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccc----ccHHHHHHHHHHh-----
Confidence 2456779999999987666543 1222221 35689999999999975432 2233333332221
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..++++++||++|.|++++|+.+.+.+-.
T Consensus 147 ~~~~~~e~Sak~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 147 WKCGYLECSAKYNWHILLLFKELLISATT 175 (198)
T ss_pred cCCcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence 24789999999999999999998876543
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=166.69 Aligned_cols=156 Identities=22% Similarity=0.264 Sum_probs=110.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..+||+++|.+|||||||+++|.+..+...+.++.+.......+..++ .+.+|||||.. .+..++..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~----------~~~~~~~~ 74 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE----------RFRTITST 74 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCch----------hHHHHHHH
Confidence 457999999999999999999999765444445555444444555544 57899999943 34556667
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
++..+ +++++|+|+++..+..+. ..|+. ....|++||+||+|+..... +..+....+.+..
T Consensus 75 ~~~~a---~~iilv~D~~~~~s~~~~--~~~~~~i~~~~~~~piivVgNK~Dl~~~~~----~~~~~~~~~~~~~----- 140 (199)
T cd04110 75 YYRGT---HGVIVVYDVTNGESFVNV--KRWLQEIEQNCDDVCKVLVGNKNDDPERKV----VETEDAYKFAGQM----- 140 (199)
T ss_pred HhCCC---cEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCEEEEEECcccccccc----cCHHHHHHHHHHc-----
Confidence 76554 458999999987655443 23332 24689999999999975432 1233344444332
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..+++++||++|.|++++|++|.+.+-.
T Consensus 141 -~~~~~e~Sa~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 141 -GISLFETSAKENINVEEMFNCITELVLR 168 (199)
T ss_pred -CCEEEEEECCCCcCHHHHHHHHHHHHHH
Confidence 2689999999999999999999987654
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=164.67 Aligned_cols=156 Identities=15% Similarity=0.243 Sum_probs=107.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||++++++..+.....++.+.+. ...+.+++ .+.+|||||.. ++..++..|
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~----------~~~~l~~~~ 73 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQE----------EYSAMRDQY 73 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCc----------cchhhHHHH
Confidence 47999999999999999999998765444444444333 23334444 47789999954 445566666
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+..+ +++++|+|.++..++.+. .+..+....+.|+++|+||+|+.+... +..+....+.+.+
T Consensus 74 ~~~~---d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----i~~~~~~~~~~~~------ 140 (189)
T PTZ00369 74 MRTG---QGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQ----VSTGEGQELAKSF------ 140 (189)
T ss_pred hhcC---CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccc----cCHHHHHHHHHHh------
Confidence 6644 458999999987654443 111222234789999999999865332 2233344443333
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..+++++||++|.|++++|++|.+.+..
T Consensus 141 ~~~~~e~Sak~~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 141 GIPFLETSAKQRVNVDEAFYELVREIRK 168 (189)
T ss_pred CCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 2689999999999999999999877654
|
|
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-22 Score=162.79 Aligned_cols=153 Identities=18% Similarity=0.250 Sum_probs=125.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|..+|||||||++++...+...+..+.|.......+.+.+ ++.+|||+| || +|+.+...|+
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAG-------QE---RFrslipsY~ 92 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-------QE---RFRSLIPSYI 92 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEeccc-------HH---HHhhhhhhhc
Confidence 6999999999999999999999988777888888888777777665 689999999 45 8999999999
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
+.... ++.|+|.++..++.+. .+|+.. .+.-+++|+||.||.+.++ +..++.+...+.++
T Consensus 93 Rds~v---aviVyDit~~~Sfe~t--~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq----vs~eEg~~kAkel~---- 159 (221)
T KOG0094|consen 93 RDSSV---AVIVYDITDRNSFENT--SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ----VSIEEGERKAKELN---- 159 (221)
T ss_pred cCCeE---EEEEEeccccchHHHH--HHHHHHHHhccCCCceEEEEEcccccccchhh----hhHHHHHHHHHHhC----
Confidence 88775 7899999988887664 455542 2356789999999998876 45666666666665
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..|+++||+.|+||.++|..|...+.
T Consensus 160 --a~f~etsak~g~NVk~lFrrIaa~l~ 185 (221)
T KOG0094|consen 160 --AEFIETSAKAGENVKQLFRRIAAALP 185 (221)
T ss_pred --cEEEEecccCCCCHHHHHHHHHHhcc
Confidence 68999999999999999999887654
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=160.18 Aligned_cols=156 Identities=22% Similarity=0.267 Sum_probs=98.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceec-cCCCCceEEE--EEEEeC--CCEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALT-SKTPGKTQCI--NHFRIN--DSWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~-~~~~~~t~~~--~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.|+++|.+|||||||+++|++....... ...+++|... ..+.+. ..+.+|||||.. + +...+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~----------~---~~~~~ 68 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE----------K---FIKNM 68 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH----------H---HHHHH
Confidence 5899999999999999999974311111 1223444432 233333 378999999953 2 22233
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCC-CCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCE
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ-IPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW 280 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~-~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (308)
......+|++++|+|+++.......+...++...+ +|+++|+||+|+..... .....+++.+.+........++
T Consensus 69 ~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 143 (164)
T cd04171 69 LAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDW-----LELVEEEIRELLAGTFLADAPI 143 (164)
T ss_pred HhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHH-----HHHHHHHHHHHHHhcCcCCCcE
Confidence 33344567799999998754333333333333334 49999999999975321 1122334444443321124789
Q ss_pred EEeecCCCCCHHHHHHHHHH
Q 021750 281 IMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 281 ~~vSA~~g~gi~el~~~i~~ 300 (308)
+++||++|+|++++++++.+
T Consensus 144 ~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 144 FPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEEeCCCCcCHHHHHHHHhh
Confidence 99999999999999998864
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=170.17 Aligned_cols=156 Identities=15% Similarity=0.239 Sum_probs=111.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
....+||+++|.+|||||||+++++.+++.....++.|.+.....+..++ .+.+|||||.. .+..++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~ 79 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE----------KFGGLR 79 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCch----------hhhhhh
Confidence 35567999999999999999999998876555666666665544454443 68899999953 344566
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
..|+..++ ++++|+|.++..+.... ..|+. ..+.|+++|+||+|+.... +..+.+ .+.+.
T Consensus 80 ~~~~~~~~---~~ilvfD~~~~~s~~~i--~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----v~~~~~-~~~~~---- 144 (219)
T PLN03071 80 DGYYIHGQ---CAIIMFDVTARLTYKNV--PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----VKAKQV-TFHRK---- 144 (219)
T ss_pred HHHccccc---EEEEEEeCCCHHHHHHH--HHHHHHHHHhCCCCcEEEEEEchhhhhcc-----CCHHHH-HHHHh----
Confidence 66766554 48999999987666543 23332 2579999999999986432 122222 22221
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
...+|+++||++|.|++++|++|.+.+.+
T Consensus 145 --~~~~~~e~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 145 --KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred --cCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 24789999999999999999999977643
|
|
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=164.89 Aligned_cols=161 Identities=19% Similarity=0.222 Sum_probs=107.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.||+++|.+|||||||+++|+++.+.. .+.++.+.......+..++ .+.+|||||.. ++..+...+
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~~ 70 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE----------RYEAMSRIY 70 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCch----------hhhhhhHhh
Confidence 389999999999999999999986542 2444444444444556655 46799999953 333455555
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc--cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG--QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~--~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
+.. ++++++|+|.++..+..+. .+...+. ..+.|+++|+||+|+.........+..+.+..+...+ ..
T Consensus 71 ~~~---~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~------~~ 141 (193)
T cd04118 71 YRG---AKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEI------KA 141 (193)
T ss_pred cCC---CCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHc------CC
Confidence 543 4569999999877555432 1222222 2468999999999986543211112223344443322 36
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
+++++||++|.|+++++++|.+.+...
T Consensus 142 ~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 142 QHFETSSKTGQNVDELFQKVAEDFVSR 168 (193)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 799999999999999999999877543
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=160.61 Aligned_cols=153 Identities=16% Similarity=0.217 Sum_probs=103.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++++.+.+.....++.+ ......+..++ .+.+|||||.. +|..++..|+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~ 70 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE----------QFASMRDLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcc----------cccchHHHHH
Confidence 5899999999999999999998865433333222 12233444444 47789999953 4445666777
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HHHHHh----ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EYASWL----GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~----~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..++ ++++|+|.++..+..+. ++..++ ...++|+++|+||+|+..... +.......+.+.+ .
T Consensus 71 ~~ad---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~----~~~~~~~~~~~~~------~ 137 (163)
T cd04176 71 KNGQ---GFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESERE----VSSAEGRALAEEW------G 137 (163)
T ss_pred hhCC---EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCc----cCHHHHHHHHHHh------C
Confidence 6554 48999999987655443 222222 225799999999999865332 1223333443322 2
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+++++||++|.|++++|+++.+.+
T Consensus 138 ~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 138 CPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHhc
Confidence 6899999999999999999998654
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=160.48 Aligned_cols=151 Identities=25% Similarity=0.304 Sum_probs=105.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC--C---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN--D---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~--~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
.||+++|.+|+|||||+++++++.+.....++.+.......+.+. + .+.+|||||.. ++..++..
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~ 70 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE----------EFDAITKA 70 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH----------HHHHhHHH
Confidence 389999999999999999999976544444444443333334443 2 58999999942 45556666
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
+++.+ +++++|+|.+++.+.... ..|+. ..+.|+++|+||+|+..... +..+..+.+.+.++
T Consensus 71 ~~~~~---~~~v~v~d~~~~~s~~~l--~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----v~~~~~~~~~~~~~---- 137 (162)
T cd04106 71 YYRGA---QACILVFSTTDRESFEAI--ESWKEKVEAECGDIPMVLVQTKIDLLDQAV----ITNEEAEALAKRLQ---- 137 (162)
T ss_pred HhcCC---CEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCEEEEEEChhcccccC----CCHHHHHHHHHHcC----
Confidence 66544 458999999876655432 23332 24799999999999976432 23344455544432
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
.+++++||++|.|+++++++|.+.
T Consensus 138 --~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 138 --LPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred --CeEEEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999999998753
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=168.37 Aligned_cols=156 Identities=18% Similarity=0.172 Sum_probs=107.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC----CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND----SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
+||+++|.+|||||||+++|++..+.....++.+.......+.+++ .+.+|||||.. .+..++..|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~----------~~~~l~~~~ 70 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS----------IGGKMLDKY 70 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH----------HHHHHHHHH
Confidence 4899999999999999999998765443334444333334444432 57899999942 344567777
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHH-HHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLE-YASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~-l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
+..+ |++++|+|.+++.++.+.+ +...+. ..+.|+++|+||+|+.+.+. +..+..+.+.+..
T Consensus 71 ~~~a---d~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~----v~~~~~~~~~~~~---- 139 (215)
T cd04109 71 IYGA---HAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT----VKDDKHARFAQAN---- 139 (215)
T ss_pred hhcC---CEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccc----cCHHHHHHHHHHc----
Confidence 6544 5599999999876655431 112221 13467999999999975432 2344455554443
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..+++++||++|+|++++|++|.+.+..
T Consensus 140 --~~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 140 --GMESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred --CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2679999999999999999999987653
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=159.98 Aligned_cols=153 Identities=22% Similarity=0.262 Sum_probs=106.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||+++|.+.++.....++.+.......+.+++ .+.+|||||.. .+..+.+.++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~----------~~~~~~~~~~ 70 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE----------RFRSVTRSYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchH----------HHHHhHHHHh
Confidence 4899999999999999999999875444444555444444444444 57899999953 3444566665
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HHHHH---hccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EYASW---LGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l~~~---~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
.. ++++++|+|.+++.+.... .+... ....+.|+++|+||+|+..... +..+....+.+.. ..
T Consensus 71 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----~~~~~~~~~~~~~------~~ 137 (161)
T cd04113 71 RG---AAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQRE----VTFLEASRFAQEN------GL 137 (161)
T ss_pred cC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhcc----CCHHHHHHHHHHc------CC
Confidence 54 4559999999987665442 11111 2235899999999999976432 2333444444332 27
Q ss_pred CEEEeecCCCCCHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
+++++||+++.|++++|+++.+.
T Consensus 138 ~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 138 LFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 89999999999999999999864
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-21 Score=160.70 Aligned_cols=155 Identities=19% Similarity=0.240 Sum_probs=107.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
||+++|.+|||||||+++++++.+...+.++.+.......+.+++ .+.+|||||.. ++..+...+++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~~ 71 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE----------RFKCIASTYYR 71 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH----------HHHhhHHHHhc
Confidence 799999999999999999999876555555555444444555554 68899999953 45556666665
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhc-------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLG-------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
.+ +++++|+|+++..+.... ..|+. ....|+++|+||+|+.+..+.. ...+....+.+.+
T Consensus 72 ~a---d~~ilv~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~--~~~~~~~~~~~~~------ 138 (170)
T cd04108 72 GA---QAIIIVFDLTDVASLEHT--RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYA--LMEQDAIKLAAEM------ 138 (170)
T ss_pred CC---CEEEEEEECcCHHHHHHH--HHHHHHHHHhcCCCCCeEEEEEEChhcCcccccc--ccHHHHHHHHHHc------
Confidence 44 459999999875544432 22332 1236799999999986543200 1223333333332
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..+++++||++|.|++++|+.|.+++.+
T Consensus 139 ~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 139 QAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 2679999999999999999999988765
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-21 Score=166.15 Aligned_cols=156 Identities=23% Similarity=0.304 Sum_probs=109.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-C---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-D---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
.+||+++|.+|||||||+++|++..+.....++.+.......+.+. + .+.+|||||.. .+..+...
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~ 71 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE----------RFRSITRS 71 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcch----------hHHHHHHH
Confidence 3699999999999999999999976543333344433333344442 2 57899999953 45556667
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
|+..+ +++++|+|.+++.+..+. ..|+. ....|+++|+||+|+..... +..+..+.+.+.++
T Consensus 72 ~~~~~---d~iilv~D~~~~~Sf~~l--~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~----v~~~~~~~~~~~~~-- 140 (211)
T cd04111 72 YYRNS---VGVLLVFDITNRESFEHV--HDWLEEARSHIQPHRPVFILVGHKCDLESQRQ----VTREEAEKLAKDLG-- 140 (211)
T ss_pred HhcCC---cEEEEEEECCCHHHHHHH--HHHHHHHHHhcCCCCCeEEEEEEccccccccc----cCHHHHHHHHHHhC--
Confidence 66554 458999999987655543 22222 24577899999999976432 34455555554432
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.+++++||++|+|++++|++|.+.+.+.
T Consensus 141 ----~~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 141 ----MKYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred ----CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 7899999999999999999999876544
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-21 Score=158.49 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=103.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++++.++.....+..+.......+.+++ .+.+|||||.. .+..++..++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~----------~~~~~~~~~~ 70 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE----------RFRSLIPSYI 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHHHHh
Confidence 3899999999999999999999865332233333333344454544 58899999943 4445666665
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc--CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ--NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~--~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
..+ +++++|+|.+++.+..+. .+..+... .+.|+++|+||+|+..... ...+....+.+.. ..
T Consensus 71 ~~~---~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----~~~~~~~~~~~~~------~~ 137 (161)
T cd01861 71 RDS---SVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ----VSTEEGEKKAKEL------NA 137 (161)
T ss_pred ccC---CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCc----cCHHHHHHHHHHh------CC
Confidence 544 459999999887655442 11122222 3599999999999964322 1333344443332 27
Q ss_pred CEEEeecCCCCCHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
+++++||+++.|+++++++|.+.
T Consensus 138 ~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 138 MFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHh
Confidence 89999999999999999999875
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.9e-22 Score=157.65 Aligned_cols=155 Identities=23% Similarity=0.263 Sum_probs=126.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..+||.++|.+|||||||+-+++.+.+......+.|....+..+.+++ ++.+|||+| +| +|+.++..
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG-------qE---rFRtLTpS 79 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG-------QE---RFRTLTPS 79 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccc-------hH---hhhccCHh
Confidence 347999999999999999999999876555555577777788888876 689999999 44 78889999
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
||+.+.+ +++|+|.+...++..+ ..|+.+ .++-.++|+||+|...++. +..++.-.+++..+
T Consensus 80 yyRgaqG---iIlVYDVT~Rdtf~kL--d~W~~Eld~Ystn~diikmlVgNKiDkes~R~----V~reEG~kfAr~h~-- 148 (209)
T KOG0080|consen 80 YYRGAQG---IILVYDVTSRDTFVKL--DIWLKELDLYSTNPDIIKMLVGNKIDKESERV----VDREEGLKFARKHR-- 148 (209)
T ss_pred HhccCce---eEEEEEccchhhHHhH--HHHHHHHHhhcCCccHhHhhhcccccchhccc----ccHHHHHHHHHhhC--
Confidence 9999888 8999999988877664 445443 5666789999999775544 56777777877776
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+-++++||++.+|++..|+.+.+.+-
T Consensus 149 ----~LFiE~SAkt~~~V~~~FeelveKIi 174 (209)
T KOG0080|consen 149 ----CLFIECSAKTRENVQCCFEELVEKII 174 (209)
T ss_pred ----cEEEEcchhhhccHHHHHHHHHHHHh
Confidence 77999999999999999998887653
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-21 Score=159.29 Aligned_cols=159 Identities=25% Similarity=0.338 Sum_probs=99.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+|+|++..+ ...+.+++|.... .+..++ .+.+|||||+..... .+ ...+.......+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~-~~~~~~~~~~~~ 76 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP--EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPL-EE-RNTIEMQAITAL 76 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC--ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccc-cC-CchHHHHHHHHH
Confidence 5899999999999999999999754 2344555554432 333333 799999999843211 11 001100011111
Q ss_pred HhcCCccEEEEEEeCCCCCCh--hH-HHHHHHhccC--CCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKP--ID-LEYASWLGQN--QIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~--~~-~~l~~~~~~~--~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
.. ..+++++|+|+++..+. .+ .++...+... +.|+++|+||+|+..... .....+... . ..
T Consensus 77 ~~--~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~---------~~~~~~~~~-~--~~ 142 (168)
T cd01897 77 AH--LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFED---------LSEIEEEEE-L--EG 142 (168)
T ss_pred Hh--ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhh---------HHHHHHhhh-h--cc
Confidence 11 13568999999876442 11 2333344333 799999999999975332 111111111 1 23
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+++++||++|.|++++++++.+.+
T Consensus 143 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 143 EEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred CceEEEEecccCCHHHHHHHHHHHh
Confidence 7899999999999999999998765
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=156.51 Aligned_cols=167 Identities=24% Similarity=0.349 Sum_probs=113.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|+|||||+|+|++... ......++++... ..+..++ .+.+|||||+............+. . ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~-~-~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEER-VIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYS-V-LRT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccc-eeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHH-H-HHH
Confidence 46899999999999999999998753 3345556665543 3344444 689999999864321111001111 0 111
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc--CCCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ--TAPP 279 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 279 (308)
+.....++++++|+|++.+.+.....+...+...++|+++|+||+|+.+.. ....+.+.+.+.+.+. ...+
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 151 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKD-------SKTMKEFKKEIRRKLPFLDYAP 151 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCcc-------HHHHHHHHHHHHhhcccccCCc
Confidence 223345677999999998877766666666666789999999999997642 1224444444443332 2378
Q ss_pred EEEeecCCCCCHHHHHHHHHHH
Q 021750 280 WIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 280 ~~~vSA~~g~gi~el~~~i~~~ 301 (308)
++++||++++|++++++++.++
T Consensus 152 ~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 152 IVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eEEEeccCCCCHHHHHHHHHHh
Confidence 9999999999999999998875
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-21 Score=162.84 Aligned_cols=161 Identities=17% Similarity=0.159 Sum_probs=107.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-C---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-D---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.||+++|.+|||||||+++|.++.+.....++.+... ...+... + .+.+|||||.. ++..+...+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~ 69 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENY-VTNIQGPNGKIIELALWDTAGQE----------EYDRLRPLS 69 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeee-EEEEEecCCcEEEEEEEECCCch----------hHHHHHHHh
Confidence 3899999999999999999999865433322222222 1223332 2 57899999953 344455555
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+. .++++++|+|.++..++.+.. ..|+. ..+.|+++|+||+|+.........+..+..+++....+
T Consensus 70 ~~---~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~----- 140 (187)
T cd04132 70 YP---DVDVLLICYAVDNPTSLDNVE-DKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQG----- 140 (187)
T ss_pred CC---CCCEEEEEEECCCHHHHHHHH-HHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcC-----
Confidence 44 445699999999877665542 12321 24789999999999976432222233444555544432
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
..+++++||++|.|++++|+.+.+.+....
T Consensus 141 ~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 170 (187)
T cd04132 141 AFAYLECSAKTMENVEEVFDTAIEEALKKE 170 (187)
T ss_pred CcEEEEccCCCCCCHHHHHHHHHHHHHhhh
Confidence 137999999999999999999998776544
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-21 Score=160.30 Aligned_cols=153 Identities=12% Similarity=0.157 Sum_probs=101.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
.++|+++|.+|||||||+++|..+++. .+.++.+.+ ...+...+ .+.+|||||.. ++..++..++.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~--~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~~~~ 75 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFN--VETVTYKNVKFNVWDVGGQD----------KIRPLWRHYYT 75 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccc--eEEEEECCEEEEEEECCCCH----------HHHHHHHHHhc
Confidence 469999999999999999999876552 233333333 23333443 79999999953 45556777776
Q ss_pred hcCCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
.++ ++++|+|+++..+..+. .+...+.. .++|+++|+||+|+.+.. ..+++++..+.. .......
T Consensus 76 ~a~---~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~~~~i~~~~~~~-~~~~~~~ 145 (168)
T cd04149 76 GTQ---GLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM------KPHEIQEKLGLT-RIRDRNW 145 (168)
T ss_pred cCC---EEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC------CHHHHHHHcCCC-ccCCCcE
Confidence 544 59999999986554332 22233322 468999999999986531 223333322111 1111234
Q ss_pred CEEEeecCCCCCHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~ 300 (308)
+++++||++|+|++++|+||.+
T Consensus 146 ~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 146 YVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EEEEeeCCCCCChHHHHHHHhc
Confidence 7899999999999999999864
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-21 Score=162.22 Aligned_cols=155 Identities=19% Similarity=0.256 Sum_probs=108.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++|.+..+...+.++.+.+.....+.+++ .+.+|||||.. .+...+..++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~----------~~~~~~~~~~ 70 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE----------RFRSLNNSYY 70 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH----------HHHhhHHHHc
Confidence 4899999999999999999999876433455555555445555554 47799999943 3444555555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
.. ++++++|+|.+++.+..+. ..|+. ....|+++|+||+|+.+... +..+....+.+..
T Consensus 71 ~~---~d~iilv~d~~~~~s~~~i--~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~----v~~~~~~~~~~~~------ 135 (188)
T cd04125 71 RG---AHGYLLVYDVTDQESFENL--KFWINEINRYARENVIKVIVANKSDLVNNKV----VDSNIAKSFCDSL------ 135 (188)
T ss_pred cC---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhCCCCCeEEEEEECCCCccccc----CCHHHHHHHHHHc------
Confidence 44 4559999999987655443 22332 24589999999999875432 2333344443332
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
..+++++||++|.|++++|+++.+.+...
T Consensus 136 ~~~~~evSa~~~~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 136 NIPFFETSAKQSINVEEAFILLVKLIIKR 164 (188)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 36899999999999999999998877543
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-21 Score=160.67 Aligned_cols=152 Identities=16% Similarity=0.232 Sum_probs=102.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++++...+.....++.+.......+..++ .+.+|||||... +..+...++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~ 70 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK----------FGGLRDGYY 70 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChh----------hccccHHHh
Confidence 4899999999999999999998765444444444443333333333 588999999642 222444555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
.. ++++++|+|.++..+.... ..|+.. .++|+++|+||+|+..... . .....+.+. ..
T Consensus 71 ~~---~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~-----~-~~~~~~~~~------~~ 133 (166)
T cd00877 71 IG---GQCAIIMFDVTSRVTYKNV--PNWHRDLVRVCGNIPIVLCGNKVDIKDRKV-----K-AKQITFHRK------KN 133 (166)
T ss_pred cC---CCEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCcEEEEEEchhcccccC-----C-HHHHHHHHH------cC
Confidence 43 4569999999987665543 223221 2799999999999973221 1 112222211 24
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.+++++||++|+|++++|++|.+.+.+
T Consensus 134 ~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 134 LQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred CEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 789999999999999999999977643
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-21 Score=162.27 Aligned_cols=158 Identities=19% Similarity=0.182 Sum_probs=110.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||+.+++.+.+.....++.+.... ..+..++ ++.+|||+|.. ++..+...|+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~----------~~~~~~~~~~ 70 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQE----------DYNRLRPLSY 70 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCc----------cccccchhhc
Confidence 48999999999999999999998775445555544332 2344444 68899999953 3444555666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHhc--cCCCCEEEEeecCCCCCccc------CCCCCchhhHHHHHHHHHh
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWLG--QNQIPMTLVFTKCDKRKKKK------NGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~--~~~~pvivV~NK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~ 272 (308)
+.+ +++++|+|.++..++.+. .+...+. ..+.|+++|+||+|+.+... ....+..++.+.+.+..+
T Consensus 71 ~~a---~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~- 146 (176)
T cd04133 71 RGA---DVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIG- 146 (176)
T ss_pred CCC---cEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcC-
Confidence 544 458999999988887663 1222222 25799999999999965421 011234555666655443
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..++++|||++|.||+++|+.+.+.+
T Consensus 147 ----~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 147 ----AAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred ----CCEEEECCCCcccCHHHHHHHHHHHH
Confidence 13699999999999999999999865
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-21 Score=162.35 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=111.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
...||+++|.+|||||||++++..+.+...+.++.+... ...+.+++ .+.+|||+|.. ++..+...
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e----------~~~~~~~~ 72 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSP----------YYDNVRPL 72 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCch----------hhHhhhhh
Confidence 346999999999999999999999876544444444322 23344444 58899999942 45556666
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc--cCCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHHH
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG--QNQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQE 268 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~--~~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~~ 268 (308)
|++.++ ++++|+|.++..++.+. .+...+. ..+.|+++|+||+|+.+... ....+..++.+++++
T Consensus 73 ~~~~ad---~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~ 149 (182)
T cd04172 73 SYPDSD---AVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAK 149 (182)
T ss_pred hcCCCC---EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHH
Confidence 665544 48999999988776653 2222222 14689999999999864210 112246667777776
Q ss_pred HHHhhhcCCCCEEEeecCCCCC-HHHHHHHHHHH
Q 021750 269 LIQGFFQTAPPWIMTSSVTNQG-RDEILLHMAQL 301 (308)
Q Consensus 269 ~~~~~~~~~~~~~~vSA~~g~g-i~el~~~i~~~ 301 (308)
.++ ..+|++|||++|+| |+++|+.+.+.
T Consensus 150 ~~~-----~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 150 QIG-----AATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HcC-----CCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 664 14899999999998 99999998874
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.4e-21 Score=162.33 Aligned_cols=157 Identities=18% Similarity=0.191 Sum_probs=105.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.||+++|.+|||||||++++.+.++.. ...++.+.+.....+.+++ .+.+|||||.. ++......+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~ 70 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQE----------RFRSVTHAY 70 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcH----------HHHHhhHHH
Confidence 389999999999999999999876532 2222333333233344544 68899999942 344455555
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+.. ++++++|+|.++..+..+. .+...+. ..++|+++|+||+|+...+. +..+..+.+.+.. .
T Consensus 71 ~~~---ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----~~~~~~~~l~~~~------~ 137 (191)
T cd04112 71 YRD---AHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERV----VKREDGERLAKEY------G 137 (191)
T ss_pred ccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccc----cCHHHHHHHHHHc------C
Confidence 544 4569999999887655432 1111111 24789999999999975332 2334444444332 3
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.+++++||++|+|++++|++|.+.+...
T Consensus 138 ~~~~e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 138 VPFMETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999999887654
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-21 Score=163.02 Aligned_cols=159 Identities=19% Similarity=0.222 Sum_probs=108.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcc-----eeccCCCCceEEEE--EEEe---------------CCCEEEecCCCccc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKL-----ALTSKTPGKTQCIN--HFRI---------------NDSWYLVDLPGYGY 183 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~-----~~~~~~~~~t~~~~--~~~~---------------~~~~~liDtpG~~~ 183 (308)
.+|+++|.+|+|||||+++|++.... ......+|+|.... .+.+ +..+.+|||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~- 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA- 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence 37999999999999999999973110 11122334544322 2222 2378999999963
Q ss_pred CCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhH
Q 021750 184 AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENL 263 (308)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~ 263 (308)
.+++.++.....+|++++|+|++.+......+...+....++|+++|+||+|+..... .....
T Consensus 80 ------------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~-----~~~~~ 142 (192)
T cd01889 80 ------------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEE-----RERKI 142 (192)
T ss_pred ------------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHH-----HHHHH
Confidence 2566776666667889999999987665554434444445789999999999974321 22234
Q ss_pred HHHHHHHHhhh----cCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 264 NDFQELIQGFF----QTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 264 ~~~~~~~~~~~----~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+++.+.+...+ ....+++++||++|+|+++|++++.+.+
T Consensus 143 ~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 143 EKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred HHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 44444433322 2347899999999999999999998764
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.7e-21 Score=157.24 Aligned_cols=157 Identities=22% Similarity=0.279 Sum_probs=105.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEe----CCCEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRI----NDSWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~----~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
|.|+++|.+|+|||||+++|++.++.. ...+++|... ..+.. +..+.+|||||.. .+..++.
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~----------~~~~~~~ 68 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAA--GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE----------AFTNMRA 68 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccccc--ccCCCeEEeeccEEEecccCCcceEEEEeCCCcH----------HHHHHHH
Confidence 469999999999999999999875432 2333444433 22333 2379999999953 2333444
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh---hhcC
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG---FFQT 276 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 276 (308)
.++. .+|++++|+|++++......+...++...++|+++|+||+|+.... .....+.+.+.... ....
T Consensus 69 ~~~~---~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~~ 139 (168)
T cd01887 69 RGAS---LTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNAN------PERVKNELSELGLQGEDEWGG 139 (168)
T ss_pred HHHh---hcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccccc------HHHHHHHHHHhhccccccccC
Confidence 4443 4456999999998765555555566666789999999999987432 11111122111110 1123
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++++||++|+|+++++++|.+..+
T Consensus 140 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 140 DVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred cCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 478999999999999999999988764
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-21 Score=157.34 Aligned_cols=153 Identities=24% Similarity=0.313 Sum_probs=106.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++.+.++.....++.+.......+..++ .+.+||+||.. .+......++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~~ 70 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE----------RFRSITSSYY 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH----------HHHHHHHHHh
Confidence 4899999999999999999998765333333444433344455544 57899999943 3444555555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhcc------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
.. +|++++|+|.+++.+.... ..|+.. .++|+++|+||+|+..... ...+..+.+.+..
T Consensus 71 ~~---~d~~ilv~d~~~~~s~~~~--~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~----~~~~~~~~~~~~~------ 135 (164)
T smart00175 71 RG---AVGALLVYDITNRESFENL--KNWLKELREYADPNVVIMLVGNKSDLEDQRQ----VSREEAEAFAEEH------ 135 (164)
T ss_pred CC---CCEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCeEEEEEEchhcccccC----CCHHHHHHHHHHc------
Confidence 43 4569999999886665443 233321 5799999999999875332 1334444443322
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++++||++|+|+++++++|.+.+.
T Consensus 136 ~~~~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 136 GLPFFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 367999999999999999999998764
|
Rab GTPases are implicated in vesicle trafficking. |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.4e-21 Score=160.37 Aligned_cols=157 Identities=16% Similarity=0.168 Sum_probs=107.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
....||+++|.+|||||||++++...++. ...++.| .....+..++ .+.+||+||.. +++.++..|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g--~~~~~~~~~~~~~~i~D~~Gq~----------~~~~~~~~~ 81 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKNISFTVWDVGGQD----------KIRPLWRHY 81 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcc--eeEEEEEECCEEEEEEECCCCH----------HHHHHHHHH
Confidence 33469999999999999999999876542 2333333 3333444444 78999999942 566688888
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--h
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--F 274 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~ 274 (308)
+..++ ++++|+|+++..+..+. ++..++.. .++|++||+||+|+.+... .+++.+.++-. .
T Consensus 82 ~~~a~---~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~---------~~~~~~~l~l~~~~ 149 (181)
T PLN00223 82 FQNTQ---GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLR 149 (181)
T ss_pred hccCC---EEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC---------HHHHHHHhCccccC
Confidence 86654 58999999976554432 33333332 4789999999999875431 34444444311 0
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
...+.++++||++|+|++++|+||.+.+..
T Consensus 150 ~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 150 QRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 112346689999999999999999887654
|
|
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-21 Score=157.21 Aligned_cols=152 Identities=23% Similarity=0.260 Sum_probs=106.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.. .+......++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~~ 70 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE----------RFRTLTSSYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCch----------hhhhhhHHHh
Confidence 4899999999999999999999865444566666665555555543 58899999953 2333444544
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH-----HHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE-----YASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~-----l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
. .++++++|+|.++..+..... +..+....+.|+++|+||+|+..... ..+....+.+.. .
T Consensus 71 ~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~-----~~~~~~~~~~~~------~ 136 (161)
T cd01863 71 R---GAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREV-----TREEGLKFARKH------N 136 (161)
T ss_pred C---CCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccccc-----CHHHHHHHHHHc------C
Confidence 3 345699999998766554421 11222346799999999999974321 233344444332 3
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
++++++||++|+|++++++.+.+.
T Consensus 137 ~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 137 MLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred CEEEEEecCCCCCHHHHHHHHHHh
Confidence 789999999999999999998764
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-21 Score=161.19 Aligned_cols=157 Identities=25% Similarity=0.310 Sum_probs=101.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeC-C-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIN-D-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~-~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+|+++|.+|||||||+|+|.+.+. .+...+++|... ..+.++ . .+.+|||||+.+..... ..+...++
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~--~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~------~~~~~~~~ 73 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP--KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG------KGLGHRFL 73 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc--cccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc------CCchHHHH
Confidence 699999999999999999998642 344555555432 233333 2 78999999985422111 11334444
Q ss_pred HhcCCccEEEEEEeCCCC-CChhHH-HHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 203 LNRSTLVSVFLLIDASIP-AKPIDL-EYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~-~~~~~~-~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.....++++++|+|++++ ...... .+...+. ..++|+++|+||+|+.+... ..+. ........
T Consensus 74 ~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-----~~~~---~~~~~~~~-- 143 (170)
T cd01898 74 RHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-----LFEL---LKELLKEL-- 143 (170)
T ss_pred HHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh-----hHHH---HHHHHhhC--
Confidence 444456779999999987 333332 1222221 13689999999999875432 1121 22222211
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
...+++++||+++.|+++++++|.++
T Consensus 144 ~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 144 WGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 23689999999999999999999875
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-21 Score=164.69 Aligned_cols=156 Identities=19% Similarity=0.246 Sum_probs=112.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..+||+++|++|||||||+++|.+..+.....++.+.......+.+++ .+.+|||||.. ++..++..
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~----------~~~~~~~~ 80 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE----------RYRAITSA 80 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHHH
Confidence 456999999999999999999999875444445555554445555555 68899999943 45567777
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
+++.+ +++++|+|.++..++... ..|+. ..+.|+++|+||+|+..... +..+....+.+..
T Consensus 81 ~~~~~---~~~ilv~d~~~~~s~~~~--~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----~~~~~~~~l~~~~---- 147 (216)
T PLN03110 81 YYRGA---VGALLVYDITKRQTFDNV--QRWLRELRDHADSNIVIMMAGNKSDLNHLRS----VAEEDGQALAEKE---- 147 (216)
T ss_pred HhCCC---CEEEEEEECCChHHHHHH--HHHHHHHHHhCCCCCeEEEEEEChhcccccC----CCHHHHHHHHHHc----
Confidence 76644 458999999887665443 33332 25799999999999865432 2344444444322
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..+++++||++|.|++++|++|.+.+.+
T Consensus 148 --~~~~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 148 --GLSFLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred --CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999999887755
|
|
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-21 Score=161.62 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=103.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe-C--C-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI-N--D-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~-~--~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.||+++|.+|||||||+++++...+.. ..++.|.+.....+.. + + .+.+|||||.. ++..++..+
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~~~~ 72 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE----------KLRPLWKSY 72 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEeeccCCCceEEEEEECCCcH----------hHHHHHHHH
Confidence 589999999999999999999876532 2233333332222322 1 2 68999999952 455566666
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc-
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ- 275 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~- 275 (308)
+..+ +++++|+|++++.+.... ++..+....++|+++|+||+|+.... ..+.++.+... .....
T Consensus 73 ~~~~---d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~------~~~~~~~~~~~-~~~~~~ 142 (183)
T cd04152 73 TRCT---DGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL------SVSEVEKLLAL-HELSAS 142 (183)
T ss_pred hccC---CEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC------CHHHHHHHhCc-cccCCC
Confidence 5544 458999999876443322 12223334679999999999986432 22223333221 11111
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
...+++++||++|+|+++++++|.+.+.+.+
T Consensus 143 ~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~ 173 (183)
T cd04152 143 TPWHVQPACAIIGEGLQEGLEKLYEMILKRR 173 (183)
T ss_pred CceEEEEeecccCCCHHHHHHHHHHHHHHHH
Confidence 1246899999999999999999998876544
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-21 Score=159.20 Aligned_cols=155 Identities=17% Similarity=0.209 Sum_probs=106.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
...||+++|.+|||||||++++++..+.....++.+.......+..++ .+.+|||||.. ++..++..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~ 73 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE----------RFRSLRTP 73 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChH----------HHHHhHHH
Confidence 456999999999999999999998766444444444443334444544 57889999942 45556777
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
++..+ +++++|+|.++..+.... ++..... ..+.|+++|+||+|+.+.. +..++++++.+..+
T Consensus 74 ~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~- 144 (170)
T cd04116 74 FYRGS---DCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ-----VSTEEAQAWCRENG- 144 (170)
T ss_pred HhcCC---CEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccc-----cCHHHHHHHHHHCC-
Confidence 76554 458899999876554432 1111111 2468999999999987322 23444555544332
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
..+++++||++|.|++++|+++.+.
T Consensus 145 ----~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 145 ----DYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred ----CCeEEEEECCCCCCHHHHHHHHHhh
Confidence 2579999999999999999998764
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=157.33 Aligned_cols=158 Identities=17% Similarity=0.234 Sum_probs=106.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||++++.+..+......+.+.+.....+.+++ .+.+||+||.. .+..++..++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~~~ 70 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQE----------RFQSLGVAFY 70 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChH----------HHHhHHHHHh
Confidence 4899999999999999999999765433344444444444455554 46799999953 3444566665
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH-----HHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE-----YASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~-----l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
+.+ +++++|+|++++.+..... +..... ..++|+++|+||+|+..... ...+..+.+.+..+
T Consensus 71 ~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~~--- 140 (172)
T cd01862 71 RGA---DCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ----VSTKKAQQWCQSNG--- 140 (172)
T ss_pred cCC---CEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccc----cCHHHHHHHHHHcC---
Confidence 444 4589999998766543321 111111 13799999999999985321 13334444433322
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
..+++++||++|.|++++++++.+.+-+.
T Consensus 141 --~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 141 --NIPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred --CceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 36899999999999999999999876554
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-21 Score=159.90 Aligned_cols=156 Identities=16% Similarity=0.160 Sum_probs=101.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
||+++|.+|||||||+++|++..+. ...|+.......+.+++ .+.+|||||.. .+...+..++..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~---~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~----------~~~~~~~~~~~~a 67 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM---QPIPTIGFNVETVEYKNLKFTIWDVGGKH----------KLRPLWKHYYLNT 67 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC---CcCCcCceeEEEEEECCEEEEEEECCCCh----------hcchHHHHHhccC
Confidence 6899999999999999999987542 22333333333444444 78999999964 2334666666554
Q ss_pred CCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCE
Q 021750 206 STLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW 280 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (308)
+++++|+|.++..+..+. .+...+. ..+.|+++|+||+|+.... ..+.+..+.+..+........+
T Consensus 68 ---d~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~~~ 138 (169)
T cd04158 68 ---QAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGAL------SVEEMTELLSLHKLCCGRSWYI 138 (169)
T ss_pred ---CEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCC------CHHHHHHHhCCccccCCCcEEE
Confidence 458999999876544332 2222322 1358999999999986432 2333333322111000112368
Q ss_pred EEeecCCCCCHHHHHHHHHHHHHH
Q 021750 281 IMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 281 ~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+++||++|.|++++|+||.+.+..
T Consensus 139 ~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 139 QGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred EeCcCCCCCCHHHHHHHHHHHHhh
Confidence 899999999999999999876543
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.8e-21 Score=157.98 Aligned_cols=154 Identities=25% Similarity=0.350 Sum_probs=106.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchH-HHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWD-KFTKD 200 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~-~~~~~ 200 (308)
..||+++|.+|||||||+++++...+.....++.+.......+.+++ .+.+|||||.. .+. .++..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~ 71 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE----------RFRKSMVQH 71 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChH----------HHHHhhHHH
Confidence 36899999999999999999998765433444444433334455544 58899999953 232 24555
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHh-------ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWL-------GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~-------~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
++.. ++++++|+|.+++.+.... ..|+ ...++|+++|+||+|+..... +..+..+++.+..
T Consensus 72 ~~~~---~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----~~~~~~~~~~~~~--- 139 (170)
T cd04115 72 YYRN---VHAVVFVYDVTNMASFHSL--PSWIEECEQHSLPNEVPRILVGNKCDLREQIQ----VPTDLAQRFADAH--- 139 (170)
T ss_pred hhcC---CCEEEEEEECCCHHHHHhH--HHHHHHHHHhcCCCCCCEEEEEECccchhhcC----CCHHHHHHHHHHc---
Confidence 5543 4558999999987666553 2232 225799999999999876443 2334444454333
Q ss_pred hcCCCCEEEeecCC---CCCHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVT---NQGRDEILLHMAQLRN 303 (308)
Q Consensus 274 ~~~~~~~~~vSA~~---g~gi~el~~~i~~~~~ 303 (308)
.++++++||++ +.|++++|..+.+.++
T Consensus 140 ---~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~~ 169 (170)
T cd04115 140 ---SMPLFETSAKDPSENDHVEAIFMTLAHKLK 169 (170)
T ss_pred ---CCcEEEEeccCCcCCCCHHHHHHHHHHHhh
Confidence 27899999999 8999999999887653
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-21 Score=158.59 Aligned_cols=149 Identities=16% Similarity=0.200 Sum_probs=98.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
||+++|.+|||||||++++..+++.. ..++.|. ....+.... .+.+|||||.. ++..++..|+..+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~--~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~~~~a 68 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEYKNISFTVWDVGGQD----------KIRPLWRHYFQNT 68 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCc--ceEEEEECCEEEEEEECCCCH----------hHHHHHHHHhcCC
Confidence 89999999999999999998765532 2233332 233344444 78999999953 4555777777665
Q ss_pred CCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH--hhhcCCC
Q 021750 206 STLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ--GFFQTAP 278 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 278 (308)
+ ++++|+|+++..+..+. .+...+.. .++|+++|+||+|+.+.. . .+++.+.+. .......
T Consensus 69 d---~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~---~~~i~~~~~~~~~~~~~~ 136 (159)
T cd04150 69 Q---GLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM------S---AAEVTDKLGLHSLRNRNW 136 (159)
T ss_pred C---EEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC------C---HHHHHHHhCccccCCCCE
Confidence 4 59999999876544332 22333222 368999999999996532 1 122222221 1112234
Q ss_pred CEEEeecCCCCCHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~ 300 (308)
.++++||++|+|++++|++|.+
T Consensus 137 ~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 137 YIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EEEEeeCCCCCCHHHHHHHHhc
Confidence 6789999999999999999864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=162.38 Aligned_cols=157 Identities=19% Similarity=0.202 Sum_probs=110.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..+||+++|.+|||||||+++|++..+ ....++.+.+.....+.+++ .+.+|||||.. ++..++..
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~~~ 81 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQE----------RFRTLTSS 81 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCch----------hhHHHHHH
Confidence 357999999999999999999998754 44555556555555555554 57899999953 45556667
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHH--HHHHhc----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLE--YASWLG----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
+++.. +++++|+|.++..++.+.. +...+. ..+.|+++|+||+|+..... +..+....+....
T Consensus 82 ~~~~~---d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~----i~~~~~~~~~~~~---- 150 (211)
T PLN03118 82 YYRNA---QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERD----VSREEGMALAKEH---- 150 (211)
T ss_pred HHhcC---CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc----cCHHHHHHHHHHc----
Confidence 76654 4589999999876655532 111121 24679999999999975432 1223333333322
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.++++++||++|.|++++|++|.+.+..
T Consensus 151 --~~~~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 151 --GCLFLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred --CCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 3679999999999999999999977643
|
|
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.7e-21 Score=158.76 Aligned_cols=156 Identities=19% Similarity=0.192 Sum_probs=103.4
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
+...++|+++|.+|||||||+++|.+... ..+.++.+. ....+.+++ .+.+|||||.. .++.++..
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~~~~l~l~D~~G~~----------~~~~~~~~ 77 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF--QIKTLEYEGYKLNIWDVGGQK----------TLRPYWRN 77 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc--ceEEEEECCEEEEEEECCCCH----------HHHHHHHH
Confidence 34457999999999999999999998743 334444442 233344444 68999999953 34456666
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
++.. ++++++|+|+++..+..+. .+..++. ..++|+++|+||+|+.+.. ..+.++.+.+... ...
T Consensus 78 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------~~~~~~~~~~~~~-~~~ 147 (173)
T cd04154 78 YFES---TDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL------SEEEIREALELDK-ISS 147 (173)
T ss_pred HhCC---CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC------CHHHHHHHhCccc-cCC
Confidence 6654 4558999999886544332 2233322 2579999999999997532 2222333222110 011
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
..++++++||++|.|++++|+++.+
T Consensus 148 ~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 148 HHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred CceEEEeccCCCCcCHHHHHHHHhc
Confidence 2468999999999999999999864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=155.76 Aligned_cols=154 Identities=19% Similarity=0.264 Sum_probs=106.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|++|||||||++++++.++.....++.+.......+.+++ .+.+||+||.. ++...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~ 71 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE----------RYRSLAPMYY 71 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchH----------HHHHHHHHHh
Confidence 5899999999999999999999876444555666555444555554 68899999942 3444555555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
..+ +++++|+|++++.+.... .+...+. ....|+++|+||+|+..... ...+....+.... ..
T Consensus 72 ~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----~~~~~~~~~~~~~------~~ 138 (163)
T cd01860 72 RGA---AAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQ----VSTEEAQEYADEN------GL 138 (163)
T ss_pred ccC---CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCc----CCHHHHHHHHHHc------CC
Confidence 443 559999999876554332 1222221 24688999999999875332 1233333333322 26
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+++++||++|.|+++++++|.+.+
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 139 LFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 799999999999999999998764
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=8e-21 Score=160.08 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=107.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++.++.+...+.++.+... ...+.+++ .+.+|||+|.. .+..+...|+
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~----------~~~~~~~~~~ 70 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSP----------YYDNVRPLCY 70 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCch----------hhhhcchhhc
Confidence 5899999999999999999999876444334433222 22344444 58899999953 3344555555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHhc--cCCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHHHHH
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWLG--QNQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQELI 270 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~--~~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~ 270 (308)
+.+ +++++|+|.+++.++.+. .+...+. ..+.|+++|+||+|+.+... ....+..++.+++.+.+
T Consensus 71 ~~a---~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~ 147 (178)
T cd04131 71 PDS---DAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQL 147 (178)
T ss_pred CCC---CEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 444 458999999988777652 2222222 25789999999999964210 01124566677776665
Q ss_pred HhhhcCCCCEEEeecCCCCC-HHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQG-RDEILLHMAQL 301 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~g-i~el~~~i~~~ 301 (308)
+ ..+|+++||++|+| |+++|..+.+.
T Consensus 148 ~-----~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 148 G-----AEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred C-----CCEEEECccCcCCcCHHHHHHHHHHH
Confidence 4 13799999999995 99999999884
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.7e-21 Score=156.33 Aligned_cols=150 Identities=19% Similarity=0.305 Sum_probs=99.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCc-ceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHh
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKK-LALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 204 (308)
+|+++|.+|||||||+++|++..+ ...+.++.+.+. ..+..++ .+.+|||||.. ++..++..|+..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~~~~~ 68 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEKGNLSFTAFDMSGQG----------KYRGLWEHYYKN 68 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEECCEEEEEEECCCCH----------hhHHHHHHHHcc
Confidence 589999999999999999998642 334455555433 2333344 68999999953 455567777654
Q ss_pred cCCccEEEEEEeCCCCCChhHH--HHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--hc
Q 021750 205 RSTLVSVFLLIDASIPAKPIDL--EYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--FQ 275 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~~~~--~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 275 (308)
++++++|+|++++.+.... .+..++. ..++|+++|+||+|+..... .+++.+.++.. ..
T Consensus 69 ---~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~---------~~~~~~~l~~~~~~~ 136 (162)
T cd04157 69 ---IQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT---------AVKITQLLGLENIKD 136 (162)
T ss_pred ---CCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC---------HHHHHHHhCCccccC
Confidence 4558999999976544221 2222222 24799999999999975321 12222222110 11
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
...+++++||++|.|++++|++|.+
T Consensus 137 ~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 137 KPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred ceEEEEEeeCCCCCchHHHHHHHhc
Confidence 1246899999999999999999864
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.9e-21 Score=160.01 Aligned_cols=157 Identities=18% Similarity=0.182 Sum_probs=105.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++..+.+...+.++.+.... ..+..++ .+.+|||+|.. ++..++..|+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~ 70 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQE----------DYDRLRPLSY 70 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCcc----------chhhhhhhhc
Confidence 58999999999999999999998764433343332221 2334444 57899999964 3444555565
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCcccC--------CCCCchhhHHHHHHHH
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKKN--------GGKRPEENLNDFQELI 270 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~~ 270 (308)
..+ +++++|+|.++..+..+.. +...+. ..+.|+++|+||+|+....+. ...+..++.+.+.+..
T Consensus 71 ~~a---~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~ 147 (175)
T cd01874 71 PQT---DVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDL 147 (175)
T ss_pred ccC---CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHh
Confidence 544 4599999999877665542 222222 247899999999998654210 0123344444444433
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
+ ...++++||++|.|++++|+.+.+.
T Consensus 148 ~-----~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 148 K-----AVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred C-----CcEEEEecCCCCCCHHHHHHHHHHH
Confidence 2 2679999999999999999998874
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=159.43 Aligned_cols=158 Identities=17% Similarity=0.192 Sum_probs=104.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++++++.+...+.++.|.......+..++ .+.+|||+|.. ++..++..++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~----------~~~~~~~~~~ 70 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR----------EFINMLPLVC 70 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCch----------hHHHhhHHHC
Confidence 4899999999999999999999876554555555554444555555 58899999953 3445666655
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCC-CCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGG-KRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 277 (308)
.. ++++++|+|.++..+..+. ++...+. ....| ++|+||+|+........ ....+..+++.+.. .
T Consensus 71 ~~---a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~------~ 140 (182)
T cd04128 71 ND---AVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAM------K 140 (182)
T ss_pred cC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHc------C
Confidence 44 4559999999987666553 1111111 23455 68899999964211000 00112222332222 2
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.+++++||++|.|++++|+++.+.+-
T Consensus 141 ~~~~e~SAk~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 141 APLIFCSTSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999987664
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=164.46 Aligned_cols=160 Identities=16% Similarity=0.138 Sum_probs=112.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
..||+++|.+|||||||+++++++.+...+.++.+.... ..+.+++ .+.+|||+|.. .|..+...|
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e----------~~~~~~~~~ 81 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSP----------YYDNVRPLC 81 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCch----------hhHHHHHHH
Confidence 469999999999999999999998765444444443332 2344444 68899999942 455667777
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc--cCCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHHHH
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG--QNQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQEL 269 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~--~~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~ 269 (308)
|..++ ++++|+|.++..++... .+...+. ..+.|+++|+||+|+..... ....+..++.+++++.
T Consensus 82 ~~~ad---~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~ 158 (232)
T cd04174 82 YSDSD---AVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQ 158 (232)
T ss_pred cCCCc---EEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHH
Confidence 76554 48999999988776642 2222222 24789999999999864210 0122456667777766
Q ss_pred HHhhhcCCC-CEEEeecCCCC-CHHHHHHHHHHHHHH
Q 021750 270 IQGFFQTAP-PWIMTSSVTNQ-GRDEILLHMAQLRNY 304 (308)
Q Consensus 270 ~~~~~~~~~-~~~~vSA~~g~-gi~el~~~i~~~~~~ 304 (308)
++ + +|++|||++|+ |++++|..+.+.+.+
T Consensus 159 ~~------~~~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 159 LG------AEVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred cC------CCEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 54 5 69999999998 899999999877543
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.3e-21 Score=162.08 Aligned_cols=159 Identities=16% Similarity=0.187 Sum_probs=108.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+.++..+.+.....++.+... ...+.+++ .+.+|||+|.. +++.++..|+
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e----------~~~~l~~~~~ 72 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQE----------EYDRLRTLSY 72 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCch----------hhhhhhhhhc
Confidence 5999999999999999999999876444444443222 12233444 58899999953 5666777777
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCcccC--------CCCCchhhHHHHHHHH
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKKN--------GGKRPEENLNDFQELI 270 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~~ 270 (308)
+.++ ++++|+|.++..++.+.. +...+. ..+.|+++|+||+|+.+.... ...+..++.+.+.+.+
T Consensus 73 ~~a~---~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 149 (191)
T cd01875 73 PQTN---VFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQI 149 (191)
T ss_pred cCCC---EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 6544 589999999887766542 222121 257999999999999654210 0012333444444433
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+ ..+++++||++|+|++++|+++.+.+-
T Consensus 150 ~-----~~~~~e~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 150 H-----AVKYLECSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred C-----CcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 2 257999999999999999999998664
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-21 Score=158.65 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=97.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcc--e--eccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKL--A--LTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~--~--~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
+|+++|.+|||||||+++|++.... . .....++.......+.+++ .+.+|||||.. .+..++..+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~~ 70 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQE----------SLRSLWDKY 70 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCCh----------hhHHHHHHH
Confidence 5899999999999999999874211 0 1111222222333455554 79999999964 344455555
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh-hhc
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG-FFQ 275 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 275 (308)
+.. ++++++|+|+++..+.... .+..++. ..++|+++|+||+|+.... ..+.+..+.+.... ...
T Consensus 71 ~~~---~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~------~~~~~~~~~~~~~~~~~~ 141 (167)
T cd04160 71 YAE---CHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL------SVEEIKEVFQDKAEEIGR 141 (167)
T ss_pred hCC---CCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC------CHHHHHHHhccccccccC
Confidence 544 4469999999875433321 1222222 2579999999999986532 22223232222111 111
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
...+++++||++|+|++++++||.+
T Consensus 142 ~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 142 RDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred CceEEEEeeCCCCcCHHHHHHHHhc
Confidence 2368999999999999999999865
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=157.53 Aligned_cols=153 Identities=15% Similarity=0.157 Sum_probs=102.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
..||+++|.+|||||||++++..+++. .+ .|+.......+.... .+.+|||||.. .+..++..|+.
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~--~~t~~~~~~~~~~~~~~l~l~D~~G~~----------~~~~~~~~~~~ 79 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TT--IPTIGFNVETVTYKNISFTVWDVGGQD----------KIRPLWRHYYT 79 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-Cc--CCccccceEEEEECCEEEEEEECCCCh----------hhHHHHHHHhC
Confidence 469999999999999999999876542 22 333333333344444 78999999953 45557777776
Q ss_pred hcCCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh--hhcC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG--FFQT 276 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 276 (308)
.++ ++++|+|.+++.+..+. .+...+.. .+.|++||+||+|+.+.. . .+++.+.++. ....
T Consensus 80 ~ad---~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------~---~~~i~~~~~~~~~~~~ 147 (175)
T smart00177 80 NTQ---GLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM------K---AAEITEKLGLHSIRDR 147 (175)
T ss_pred CCC---EEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC------C---HHHHHHHhCccccCCC
Confidence 554 58999999976544332 22222222 468999999999987532 1 1223332221 1112
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+.++++||++|+|++++|+||.+.+
T Consensus 148 ~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 148 NWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred cEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 34577899999999999999998765
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-20 Score=169.19 Aligned_cols=161 Identities=28% Similarity=0.330 Sum_probs=114.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeC-CCEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIN-DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
.|+++|.||||||||+|+|++.+ .+.+++.+++|+... .+..+ .+++++||||+..... .+... +......
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~-~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~--~l~~~---~~~~~~~ 80 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQK-ISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR--ALNRA---MNKAAWS 80 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc-eeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh--HHHHH---HHHHHHH
Confidence 59999999999999999999975 367788888877532 22223 3899999999864321 11111 2222223
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEe
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 283 (308)
....+|++++|+|++......+..+...+...++|+++|+||+|+.... +.+....+.+...+. ..+++++
T Consensus 81 ~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~--------~~l~~~~~~l~~~~~-~~~i~~i 151 (292)
T PRK00089 81 SLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDK--------EELLPLLEELSELMD-FAEIVPI 151 (292)
T ss_pred HHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCH--------HHHHHHHHHHHhhCC-CCeEEEe
Confidence 3455677999999998666666666666666679999999999997421 223334444433322 4789999
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q 021750 284 SSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 284 SA~~g~gi~el~~~i~~~~ 302 (308)
||+++.|+++++++|.+.+
T Consensus 152 SA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 152 SALKGDNVDELLDVIAKYL 170 (292)
T ss_pred cCCCCCCHHHHHHHHHHhC
Confidence 9999999999999998875
|
|
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=158.85 Aligned_cols=157 Identities=18% Similarity=0.148 Sum_probs=105.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||+.+++.+.+.....++.+... ...+..++ .+.+|||||.. .+..++..++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~ 70 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE----------DYDRLRPLSY 70 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCch----------hhhhhhhhhc
Confidence 4899999999999999999998765443333332211 22333444 57899999953 3444555555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHHHHH
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQELI 270 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~ 270 (308)
.. ++++++|+|.+++.++.+.. +...+. ..+.|+++|+||+|+.+... ....+..++.+.+.+.+
T Consensus 71 ~~---~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 147 (174)
T cd01871 71 PQ---TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 147 (174)
T ss_pred CC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 43 45699999999877665531 222222 24689999999999965321 01123444555555544
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
+ ..++++|||++|+|++++|+.+.+.
T Consensus 148 ~-----~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 148 G-----AVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred C-----CcEEEEecccccCCHHHHHHHHHHh
Confidence 3 2589999999999999999998763
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-21 Score=157.00 Aligned_cols=162 Identities=20% Similarity=0.276 Sum_probs=124.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
+....||.++|.+|||||||+|++.+.++......+.|.......+.+++ -+.+|||+|. | +|.++.
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQ-------E---RFqsLg 75 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQ-------E---RFQSLG 75 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccH-------H---Hhhhcc
Confidence 35678999999999999999999999887777777888777777777776 4789999994 3 666666
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHH
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELI 270 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 270 (308)
..+|+.++. +++++|...+.++..+ +++..... ..-|+||++||+|+...... .+.....+.|++.-
T Consensus 76 ~aFYRgaDc---Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r--~VS~~~Aq~WC~s~ 150 (210)
T KOG0394|consen 76 VAFYRGADC---CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSR--QVSEKKAQTWCKSK 150 (210)
T ss_pred cceecCCce---EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccc--eeeHHHHHHHHHhc
Confidence 666666554 8999999887665543 33333331 46799999999999764321 24667777777766
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+ ..|||++|||...||++.|+.+.+..-
T Consensus 151 g-----nipyfEtSAK~~~NV~~AFe~ia~~aL 178 (210)
T KOG0394|consen 151 G-----NIPYFETSAKEATNVDEAFEEIARRAL 178 (210)
T ss_pred C-----CceeEEecccccccHHHHHHHHHHHHH
Confidence 5 589999999999999999999887654
|
|
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-20 Score=154.56 Aligned_cols=152 Identities=19% Similarity=0.273 Sum_probs=101.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC--CcceeccCCCCceEEEEEEEeC-C---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR--KKLALTSKTPGKTQCINHFRIN-D---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~--~~~~~~~~~~~~t~~~~~~~~~-~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
.||+++|.+|||||||++++... .+.....++.|.......+..+ + .+.+|||||.. .+..++.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 70 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE----------LYSDMVS 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH----------HHHHHHH
Confidence 38999999999999999999864 2333333333333333334332 2 68899999942 4445666
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
.++. .++++++|+|.++..+..+. ..|+.. .+.|+++|+||+|+.+..+ +.....+.+....
T Consensus 71 ~~~~---~~d~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~---- 137 (164)
T cd04101 71 NYWE---SPSVFILVYDVSNKASFENC--SRWVNKVRTASKHMPGVLVGNKMDLADKAE----VTDAQAQAFAQAN---- 137 (164)
T ss_pred HHhC---CCCEEEEEEECcCHHHHHHH--HHHHHHHHHhCCCCCEEEEEECcccccccC----CCHHHHHHHHHHc----
Confidence 6654 34569999999876554332 233321 4699999999999975432 1222223332221
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+++++||++|.|++++++++.+.+
T Consensus 138 --~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 138 --QLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred --CCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 36799999999999999999998764
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=155.21 Aligned_cols=154 Identities=18% Similarity=0.253 Sum_probs=104.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||++++.++.+...+.++.+... ...+..++ .+.+|||||.. ++..++..++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~ 70 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTE----------QFTAMRELYI 70 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcc----------cchhhhHHHH
Confidence 5899999999999999999998865443334333221 23334443 57899999954 4455666776
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..+. ++++|+|.+++.+.... .+.......++|+++|+||+|+...+. ...+....+.+.++ .
T Consensus 71 ~~~~---~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~----~~~~~~~~~~~~~~-----~ 138 (168)
T cd04177 71 KSGQ---GFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQ----VSREDGVSLSQQWG-----N 138 (168)
T ss_pred hhCC---EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCc----cCHHHHHHHHHHcC-----C
Confidence 6654 47899999876554332 122222245799999999999875432 12233333333221 2
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+++++||++|.|++++|+++...+
T Consensus 139 ~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 139 VPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998643
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-20 Score=153.30 Aligned_cols=154 Identities=18% Similarity=0.259 Sum_probs=100.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++++...+.....++.+... ......++ .+.+|||||.. .+..+...++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~~~~ 69 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQE----------DYAAIRDNYH 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChh----------hhhHHHHHHh
Confidence 4899999999999999999998754322222211111 12223333 58899999953 3334555555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
...+ ++++|+|.+++.+.... .+..+.. ..++|+++|+||+|+..... ........+.+.+ .
T Consensus 70 ~~~~---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~----~~~~~~~~~~~~~------~ 136 (164)
T cd04139 70 RSGE---GFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ----VSSEEAANLARQW------G 136 (164)
T ss_pred hcCC---EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccc----cCHHHHHHHHHHh------C
Confidence 5444 48899998876543321 1122222 36899999999999976321 1233333444333 2
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.+++++||++|+|++++|+++.+.+.
T Consensus 137 ~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 137 VPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999988765
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-20 Score=180.43 Aligned_cols=161 Identities=24% Similarity=0.294 Sum_probs=115.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEE--EEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH--FRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
.+++|+|+|.+|||||||+|+|++... +.+...+|+|++... +.+++ .+.+|||||+.... ..+...+......
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~-~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~ 113 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRRE-AVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA--KGLQASVAEQAEV 113 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCc-ccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc--hhHHHHHHHHHHH
Confidence 357999999999999999999998754 567889998876533 33444 79999999975322 1222233334444
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCE
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW 280 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (308)
++.. +|++++|+|++++.+..+..+..++...++|+++|+||+|+.... .... +.+...+ ...
T Consensus 114 ~~~~---aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~--------~~~~---~~~~~g~---~~~ 176 (472)
T PRK03003 114 AMRT---ADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGE--------ADAA---ALWSLGL---GEP 176 (472)
T ss_pred HHHh---CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccc--------hhhH---HHHhcCC---CCe
Confidence 4444 456999999999888777778888888899999999999986421 1111 1121111 235
Q ss_pred EEeecCCCCCHHHHHHHHHHHHHH
Q 021750 281 IMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 281 ~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+++||++|.|+++++++|.+.+..
T Consensus 177 ~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 177 HPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred EEEEcCCCCCcHHHHHHHHhhccc
Confidence 799999999999999999987643
|
|
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-20 Score=154.56 Aligned_cols=156 Identities=19% Similarity=0.245 Sum_probs=102.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||++++.+.........+.+.......+.+++ .+.+||+||.. .+......
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~ 75 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE----------RFRSITQS 75 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHHH
Confidence 457999999999999999999997654322233333333334455544 47889999953 34445555
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH-HH---HHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDL-EY---ASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~-~l---~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
++..+ +++++|+|.++..+.... .+ ...+...+.|+++|+||+|+....+ +..+..+.+.+..
T Consensus 76 ~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~----i~~~~~~~~~~~~------ 142 (169)
T cd04114 76 YYRSA---NALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERRE----VSQQRAEEFSDAQ------ 142 (169)
T ss_pred HhcCC---CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc----cCHHHHHHHHHHc------
Confidence 55443 458999999876544322 11 1222335799999999999875432 1222233332221
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+++++||++|.|++++|++|.+.+
T Consensus 143 ~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 143 DMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 26799999999999999999998753
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-20 Score=157.16 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=104.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
.+||+++|.+|||||||++++..+++.. ..++.+.. ...+..++ .+.+|||||.. .++.++..|+.
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~--~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~~~ 83 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFN--VETVEYKNLKFTMWDVGGQD----------KLRPLWRHYYQ 83 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccc--eEEEEECCEEEEEEECCCCH----------hHHHHHHHHhc
Confidence 4699999999999999999998765532 33333332 23344444 78999999953 45557777776
Q ss_pred hcCCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh-h-cC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF-F-QT 276 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ 276 (308)
.++ ++++|+|+++..+..+. .+..++.. .++|++||+||+|+.+.. . .+++.+.++.. . ..
T Consensus 84 ~ad---~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------~---~~~i~~~l~~~~~~~~ 151 (182)
T PTZ00133 84 NTN---GLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM------S---TTEVTEKLGLHSVRQR 151 (182)
T ss_pred CCC---EEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC------C---HHHHHHHhCCCcccCC
Confidence 554 48999999876544332 23333332 468999999999986532 1 12333333211 1 11
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.+.++++||++|+|++++|++|.+.+...
T Consensus 152 ~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 152 NWYIQGCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred cEEEEeeeCCCCCCHHHHHHHHHHHHHHh
Confidence 23567899999999999999999877653
|
|
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-20 Score=161.34 Aligned_cols=162 Identities=21% Similarity=0.203 Sum_probs=108.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHh
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 204 (308)
.||+++|.+|||||||+++|+.+++.. ..++.+.... ...+.. .+.+|||||.. .+..+...|+..
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~--~~~~~~~~l~iwDt~G~e----------~~~~l~~~~~~~ 67 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFY--LKQWGPYNISIWDTAGRE----------QFHGLGSMYCRG 67 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEE--EEEeeEEEEEEEeCCCcc----------cchhhHHHHhcc
Confidence 389999999999999999999987632 2333332222 122222 58899999953 344566667654
Q ss_pred cCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCccc---------------CCCCCchhhHHH
Q 021750 205 RSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKK---------------NGGKRPEENLND 265 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~---------------~~~~~~~~~~~~ 265 (308)
+ +++++|+|.++..++.+.. +..+.. ..+.|+++|+||+|+.+... ....+..++.+.
T Consensus 68 a---d~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~ 144 (220)
T cd04126 68 A---AAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKA 144 (220)
T ss_pred C---CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHH
Confidence 4 4599999999877766542 222222 24689999999999975110 012245566666
Q ss_pred HHHHHHhhh--------cCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 266 FQELIQGFF--------QTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 266 ~~~~~~~~~--------~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+.+.+.... ....+|+++||++|.||+++|..+.+.+.
T Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 145 FYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred HHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 665543110 01267999999999999999999997664
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=157.34 Aligned_cols=158 Identities=19% Similarity=0.156 Sum_probs=105.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcc-eeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKL-ALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
..+||+++|.+|||||||++++++..+. ..+.++.+.......+.+++ .+.+||++|... +..+..
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~----------~~~~~~ 72 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEV----------AILLND 72 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCccc----------ccccch
Confidence 4579999999999999999999998764 33444444443334445544 477899998532 222444
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHh-ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWL-GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~-~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
.|+.. +|++++|+|++++.+.... ++...+ ...++|+++|+||+|+.+... +.....+++.+.++ .
T Consensus 73 ~~~~~---~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~----~~~~~~~~~~~~~~-----~ 140 (169)
T cd01892 73 AELAA---CDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQ----RYEVQPDEFCRKLG-----L 140 (169)
T ss_pred hhhhc---CCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccccccc----ccccCHHHHHHHcC-----C
Confidence 55543 4569999999876544332 222222 124799999999999965432 11223445544432 1
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..++++||++|.|++++|+.+.+.+-
T Consensus 141 ~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 141 PPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred CCCEEEEeccCccHHHHHHHHHHHhh
Confidence 24699999999999999999988764
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-21 Score=150.50 Aligned_cols=156 Identities=22% Similarity=0.273 Sum_probs=127.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++.+|+|+||||||||+.++....|...+..+.|....+..+.+++ ++.+|||+| +| +|+.++..|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAG-------qE---rFrtitsty 77 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAG-------QE---RFRTITSTY 77 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeeccc-------HH---HHHHHHHHH
Confidence 46889999999999999999998876555666677777777777776 688999999 44 788899999
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
|+.-.+ +++|+|.++++++.+. .+|+.+ ...|-++|+||+|+++.+. +..++...+....+
T Consensus 78 yrgthg---v~vVYDVTn~ESF~Nv--~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv----V~t~dAr~~A~~mg----- 143 (198)
T KOG0079|consen 78 YRGTHG---VIVVYDVTNGESFNNV--KRWLEEIRNNCDSVPKVLVGNKNDDPERRV----VDTEDARAFALQMG----- 143 (198)
T ss_pred ccCCce---EEEEEECcchhhhHhH--HHHHHHHHhcCccccceecccCCCCcccee----eehHHHHHHHHhcC-----
Confidence 887665 8999999999888764 566653 5688999999999987664 45566666665553
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
+.+|++||++.+|++.+|..|.+++.+.
T Consensus 144 -ie~FETSaKe~~NvE~mF~cit~qvl~~ 171 (198)
T KOG0079|consen 144 -IELFETSAKENENVEAMFHCITKQVLQA 171 (198)
T ss_pred -chheehhhhhcccchHHHHHHHHHHHHH
Confidence 8899999999999999999999887654
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-20 Score=155.05 Aligned_cols=154 Identities=19% Similarity=0.234 Sum_probs=101.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC-------cceeccC------CCCceEEEEE--EEe---CC---CEEEecCCCcccCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK-------KLALTSK------TPGKTQCINH--FRI---ND---SWYLVDLPGYGYAA 185 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~-------~~~~~~~------~~~~t~~~~~--~~~---~~---~~~liDtpG~~~~~ 185 (308)
+|+++|.+|||||||+++|++.. +...+.+ ..|.+..... ..+ ++ .+.+|||||+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--- 78 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHV--- 78 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCCh---
Confidence 69999999999999999999742 1111111 2244443222 112 22 57899999974
Q ss_pred CchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHH
Q 021750 186 APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLND 265 (308)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~ 265 (308)
++...+..++..+ |++++|+|++++.+..+......+...++|+++|+||+|+.+.. ..+..++
T Consensus 79 -------~~~~~~~~~~~~a---d~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~------~~~~~~~ 142 (179)
T cd01890 79 -------DFSYEVSRSLAAC---EGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD------PERVKQQ 142 (179)
T ss_pred -------hhHHHHHHHHHhc---CeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC------HHHHHHH
Confidence 3444666666554 55899999998766555443344445689999999999986422 1222334
Q ss_pred HHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 266 FQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 266 ~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+.+.++- ....++++||++|+|+++++++|.+.+
T Consensus 143 ~~~~~~~---~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 143 IEDVLGL---DPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHHhCC---CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 4433321 113589999999999999999998754
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-20 Score=152.70 Aligned_cols=154 Identities=18% Similarity=0.252 Sum_probs=100.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|+|||||++++++..+.....+..+.+.....+...+ .+.+||+||.. .+...+..++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~~~ 70 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE----------RYHALGPIYY 70 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchH----------HHHHhhHHHh
Confidence 3899999999999999999998765322222222222223333333 58899999943 3444555555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH-HHHH---hccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE-YASW---LGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~-l~~~---~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
.. ++++++|+|.+++.+..... +... ....++|+++|+||+|+..... ...+.++++.+.. ..
T Consensus 71 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~----~~~~~~~~~~~~~------~~ 137 (162)
T cd04123 71 RD---ADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRV----VSKSEAEEYAKSV------GA 137 (162)
T ss_pred cc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC----CCHHHHHHHHHHc------CC
Confidence 43 45699999998766543321 1111 1123789999999999985432 2233344443332 36
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+++++||++++|++++++++.+.+
T Consensus 138 ~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 138 KHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHh
Confidence 799999999999999999998754
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.7e-21 Score=156.22 Aligned_cols=149 Identities=21% Similarity=0.242 Sum_probs=97.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC--CEEEecCCCcccCCCchhhhhchHHHHHHHHHh
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND--SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 204 (308)
+|+++|.+|||||||+++|.+.++. ...++.+.+ ...+.... .+.+|||||.. .+...+..++..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~~t~~~~--~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~~~~~ 67 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-TTIPTVGFN--VEMLQLEKHLSLTVWDVGGQE----------KMRTVWKCYLEN 67 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-cccCccCcc--eEEEEeCCceEEEEEECCCCH----------hHHHHHHHHhcc
Confidence 5899999999999999999998653 233333333 23333332 68999999953 344455555554
Q ss_pred cCCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH--hhh-cC
Q 021750 205 RSTLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ--GFF-QT 276 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~ 276 (308)
+ +++++|+|++++.+.... .+..++.. .+.|+++|+||+|+.... . .+++...++ ... ..
T Consensus 68 ~---~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~---~~~i~~~~~~~~~~~~~ 135 (160)
T cd04156 68 T---DGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL------T---AEEITRRFKLKKYCSDR 135 (160)
T ss_pred C---CEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc------C---HHHHHHHcCCcccCCCC
Confidence 4 458999999876543322 23333322 579999999999986432 1 222322221 111 12
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
..+++++||++|+|++++|++|.+
T Consensus 136 ~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 136 DWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred cEEEEecccccCCChHHHHHHHhc
Confidence 346899999999999999999864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-20 Score=159.44 Aligned_cols=155 Identities=21% Similarity=0.322 Sum_probs=110.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..+||+|+|.+|||||||+++|++.++.....++.+.+.....+.+++ .+.+|||+|.. .+..++..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~----------~~~~~~~~ 74 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE----------SFRSITRS 74 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHHHH
Confidence 357999999999999999999998766444445555555444555554 57899999953 34445666
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHh------ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWL------GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~------~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
+++. ++++++|+|.++..+.... ..|+ .....|+++|+||+|+..... +..+..+++.+..
T Consensus 75 ~~~~---ad~~vlv~D~~~~~s~~~l--~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----~~~~~~~~~~~~~---- 141 (210)
T PLN03108 75 YYRG---AAGALLVYDITRRETFNHL--ASWLEDARQHANANMTIMLIGNKCDLAHRRA----VSTEEGEQFAKEH---- 141 (210)
T ss_pred Hhcc---CCEEEEEEECCcHHHHHHH--HHHHHHHHHhcCCCCcEEEEEECccCccccC----CCHHHHHHHHHHc----
Confidence 6654 3458999999987665543 1222 125789999999999976432 2344455555443
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++++||+++.|++++|+++.+.+-
T Consensus 142 --~~~~~e~Sa~~~~~v~e~f~~l~~~~~ 168 (210)
T PLN03108 142 --GLIFMEASAKTAQNVEEAFIKTAAKIY 168 (210)
T ss_pred --CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 268999999999999999999886654
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-20 Score=153.27 Aligned_cols=153 Identities=25% Similarity=0.348 Sum_probs=106.6
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 129 ~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
+++|.+|||||||+|+|++... ......+++|.... ....++ .+.+|||||+.+... ..... +...+....
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~~~---~~~~~~~~~ 74 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRD-AIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE--GISKE---IREQAELAI 74 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcE-EeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh--HHHHH---HHHHHHHHH
Confidence 5899999999999999998742 45566777776432 333333 789999999865322 11111 222222333
Q ss_pred CCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeec
Q 021750 206 STLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSS 285 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA 285 (308)
..++++++|+|+..+.+..+.++..++...+.|+++|+||+|+..... . ...+.. .. ..+++++||
T Consensus 75 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--------~----~~~~~~-~~-~~~~~~~Sa 140 (157)
T cd01894 75 EEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEED--------E----AAEFYS-LG-FGEPIPISA 140 (157)
T ss_pred HhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHH--------H----HHHHHh-cC-CCCeEEEec
Confidence 445679999999887777676777788777899999999999976431 1 111111 11 137899999
Q ss_pred CCCCCHHHHHHHHHHH
Q 021750 286 VTNQGRDEILLHMAQL 301 (308)
Q Consensus 286 ~~g~gi~el~~~i~~~ 301 (308)
++|.|+++++++|.+.
T Consensus 141 ~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 141 EHGRGIGDLLDAILEL 156 (157)
T ss_pred ccCCCHHHHHHHHHhh
Confidence 9999999999999875
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-20 Score=152.23 Aligned_cols=154 Identities=27% Similarity=0.383 Sum_probs=105.3
Q ss_pred EEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcC
Q 021750 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRS 206 (308)
Q Consensus 130 lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (308)
|+|.+|||||||+|++++.. ......+++|... ..+.+++ .+.+|||||+.+...... ...+...++.. .
T Consensus 1 l~G~~~~GKssl~~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~----~~~~~~~~~~~-~ 73 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR--QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSE----DEKVARDFLLG-E 73 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc--ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCCh----hHHHHHHHhcC-C
Confidence 58999999999999999875 3455567666643 3455544 799999999854221110 11245555544 5
Q ss_pred CccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecC
Q 021750 207 TLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSV 286 (308)
Q Consensus 207 ~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~ 286 (308)
.++++++|+|+++.... ..+..++...++|+++|+||+|+.+... .....+.+.+.+ ..+++++||+
T Consensus 74 ~~d~vi~v~d~~~~~~~--~~~~~~~~~~~~~~iiv~NK~Dl~~~~~-----~~~~~~~~~~~~------~~~~~~iSa~ 140 (158)
T cd01879 74 KPDLIVNVVDATNLERN--LYLTLQLLELGLPVVVALNMIDEAEKRG-----IKIDLDKLSELL------GVPVVPTSAR 140 (158)
T ss_pred CCcEEEEEeeCCcchhH--HHHHHHHHHcCCCEEEEEehhhhccccc-----chhhHHHHHHhh------CCCeEEEEcc
Confidence 67789999999875432 2334444556899999999999975432 122233333333 2689999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 021750 287 TNQGRDEILLHMAQLRN 303 (308)
Q Consensus 287 ~g~gi~el~~~i~~~~~ 303 (308)
+|.|++++++++.+..+
T Consensus 141 ~~~~~~~l~~~l~~~~~ 157 (158)
T cd01879 141 KGEGIDELKDAIAELAE 157 (158)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 99999999999987643
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-20 Score=154.14 Aligned_cols=149 Identities=17% Similarity=0.188 Sum_probs=97.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
||+++|.+|||||||++++....+.. ..++.+ .....+...+ .+.+|||||.. .+..+++.++..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~~~- 66 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIG--FNVETVTYKNLKFQVWDLGGQT----------SIRPYWRCYYSN- 66 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccC--cCeEEEEECCEEEEEEECCCCH----------HHHHHHHHHhcC-
Confidence 68999999999999999998765432 222222 2222333433 78999999963 344566666654
Q ss_pred CCccEEEEEEeCCCCCChhH--HHHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--hcCCC
Q 021750 206 STLVSVFLLIDASIPAKPID--LEYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--FQTAP 278 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~--~~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 278 (308)
++++++|+|+++..+... ..+..++.. .++|+++|+||+|+.+... ..++.+.+... .....
T Consensus 67 --~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~---------~~~i~~~~~~~~~~~~~~ 135 (158)
T cd04151 67 --TDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS---------EAEISEKLGLSELKDRTW 135 (158)
T ss_pred --CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC---------HHHHHHHhCccccCCCcE
Confidence 455999999987543322 223333332 4799999999999874321 22233332211 11224
Q ss_pred CEEEeecCCCCCHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~ 300 (308)
+++++||++|.|+++++++|.+
T Consensus 136 ~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 136 SIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EEEEeeccCCCCHHHHHHHHhc
Confidence 6999999999999999999865
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.8e-21 Score=161.58 Aligned_cols=159 Identities=19% Similarity=0.248 Sum_probs=103.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
||+++|.+|||||||+++|.++.+.....++.+... ...+..++ .+.+|||+|.. .+..+...++.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~----------~~~~l~~~~~~ 70 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQE----------EFDRLRSLSYA 70 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCCh----------hcccccccccc
Confidence 899999999999999999999876443333333322 22233333 58899999953 23334444544
Q ss_pred hcCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCcccCC--------CCCchhhHHHHHHHHH
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKKNG--------GKRPEENLNDFQELIQ 271 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~~~--------~~~~~~~~~~~~~~~~ 271 (308)
. ++++++|+|.++..++...+ +...+. ..+.|+++|+||+|+.+..... ..+..++...+.+..+
T Consensus 71 ~---a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (189)
T cd04134 71 D---TDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN 147 (189)
T ss_pred C---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 3 45589999999877665432 222222 2478999999999997643210 0112222223322221
Q ss_pred hhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 272 GFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 272 ~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.++++++||++|.|++++|+++.+.+-.
T Consensus 148 -----~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 148 -----ALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred -----CCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 2679999999999999999999987653
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-21 Score=159.25 Aligned_cols=156 Identities=22% Similarity=0.272 Sum_probs=128.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
-+..|||+++|++|||||-|+.++..+++......+.|.......+.+++ +..+|||+|. | +|+.+.
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQ-------E---RyrAit 80 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQ-------E---RYRAIT 80 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccch-------h---hhcccc
Confidence 35678999999999999999999999988766677778777777777777 4689999994 4 777889
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
..||+.+-+ +++|+|.+...++.+. .+|+.+ .++++++|+||+||.+.+. ++.++.+.+++.-+
T Consensus 81 SaYYrgAvG---AllVYDITr~~Tfenv--~rWL~ELRdhad~nivimLvGNK~DL~~lra----V~te~~k~~Ae~~~- 150 (222)
T KOG0087|consen 81 SAYYRGAVG---ALLVYDITRRQTFENV--ERWLKELRDHADSNIVIMLVGNKSDLNHLRA----VPTEDGKAFAEKEG- 150 (222)
T ss_pred chhhcccce---eEEEEechhHHHHHHH--HHHHHHHHhcCCCCeEEEEeecchhhhhccc----cchhhhHhHHHhcC-
Confidence 999987776 7999999988887753 566653 6899999999999998554 57788888877754
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..++++||..+.|+++.|+.+...+
T Consensus 151 -----l~f~EtSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 151 -----LFFLETSALDATNVEKAFERVLTEI 175 (222)
T ss_pred -----ceEEEecccccccHHHHHHHHHHHH
Confidence 7799999999999999998766544
|
|
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-20 Score=150.71 Aligned_cols=152 Identities=23% Similarity=0.286 Sum_probs=103.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++.+........++.+.+.....+..++ .+.+||+||.. .+......++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~~ 70 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE----------RFRSITPSYY 70 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChH----------HHHHHHHHHh
Confidence 3799999999999999999999865433344555555445555433 68899999953 3444555555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
.. ++++++|+|++++.+.... .+...+.. .+.|+++|+||+|+..... ...+.++.+.+. ...
T Consensus 71 ~~---~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~~~~~------~~~ 137 (159)
T cd00154 71 RG---AHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQ----VSTEEAQQFAKE------NGL 137 (159)
T ss_pred cC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccccc----ccHHHHHHHHHH------cCC
Confidence 44 4569999999875443332 12222222 4699999999999973221 133444444333 247
Q ss_pred CEEEeecCCCCCHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~ 300 (308)
+++++||+++.|+++++++|.+
T Consensus 138 ~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 138 LFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred eEEEEecCCCCCHHHHHHHHhC
Confidence 8999999999999999999863
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=149.16 Aligned_cols=161 Identities=27% Similarity=0.293 Sum_probs=108.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEE--EEeC-CCEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH--FRIN-DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.+|+++|.+|+|||||+|+|++.+. ......+.++..... +... ..+.+|||||+........ ..+.....
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~--~~~~~~~~--- 77 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKI-SIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLG--ERMVKAAW--- 77 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCce-EeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHH--HHHHHHHH---
Confidence 5899999999999999999998753 444555555443222 2222 2689999999864332111 11112222
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
......+++++|+|++.+.......+...+...+.|+++|+||+|+... .+...++.+.+..... ..++++
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~--------~~~~~~~~~~~~~~~~-~~~~~~ 148 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD--------KEDLLPLLEKLKELGP-FAEIFP 148 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcccc--------HHHHHHHHHHHHhccC-CCceEE
Confidence 2334456799999999875555555566666667999999999999742 2234444444443322 368999
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~ 301 (308)
+|++++.|+++++++|.+.
T Consensus 149 ~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 149 ISALKGENVDELLEEIVKY 167 (168)
T ss_pred EEeccCCChHHHHHHHHhh
Confidence 9999999999999999765
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-20 Score=151.76 Aligned_cols=149 Identities=20% Similarity=0.229 Sum_probs=100.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
||+++|.+|||||||++++++.+. ....++.+.+ ...+.++. .+.+|||||.. .+...+..++..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~--~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~~~~ 67 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFN--VETVEYKNVSFTVWDVGGQD----------KIRPLWKHYYENT 67 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcc--eEEEEECCEEEEEEECCCCh----------hhHHHHHHHhccC
Confidence 689999999999999999999862 3333343433 33344444 79999999954 3344555555544
Q ss_pred CCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--hcCCC
Q 021750 206 STLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--FQTAP 278 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 278 (308)
+++++|+|++.+.+.... .+..+.. ..+.|+++|+||+|+..... .+++.+.++.. .....
T Consensus 68 ---~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~ 135 (158)
T cd00878 68 ---NGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALS---------VSELIEKLGLEKILGRRW 135 (158)
T ss_pred ---CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccC---------HHHHHHhhChhhccCCcE
Confidence 569999999976444332 1222222 35799999999999875431 23333333321 22346
Q ss_pred CEEEeecCCCCCHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~ 300 (308)
+++++||++|.|++++|++|.+
T Consensus 136 ~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 136 HIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EEEEeeCCCCCCHHHHHHHHhh
Confidence 8999999999999999999864
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-20 Score=170.87 Aligned_cols=156 Identities=24% Similarity=0.320 Sum_probs=105.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEe-C-CCEEEecCCCcccCCCchhhhhchHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRI-N-DSWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~-~-~~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
.+.++|+++|.+|||||||+|+|++.+ ..+++.+++|.+. ..+.+ + ..+.+|||||+.... +.++...|...+
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~--~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l-~~~lie~f~~tl 263 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGAD--VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL-PHELVAAFRATL 263 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc--eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccC-CHHHHHHHHHHH
Confidence 466899999999999999999999975 3456666666543 33444 2 379999999985421 122222333332
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHH----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDL----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
.....+|++++|+|++++....+. ++...+...++|+++|+||+|+.... .+..+ ..
T Consensus 264 ----e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~---------~v~~~---~~--- 324 (351)
T TIGR03156 264 ----EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP---------RIERL---EE--- 324 (351)
T ss_pred ----HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH---------hHHHH---Hh---
Confidence 223345679999999987665443 22333333478999999999997421 12111 11
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
...+++++||++|.|+++++++|.+.
T Consensus 325 -~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 325 -GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred -CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 12468999999999999999998764
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-20 Score=149.93 Aligned_cols=140 Identities=23% Similarity=0.250 Sum_probs=90.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRS 206 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (308)
||+++|.+|||||||+|+|.+..+ . . .+ |.. ..+.. .+|||||... .....+..+. ....
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~-~-~--~~--t~~---~~~~~--~~iDt~G~~~-----~~~~~~~~~~----~~~~ 61 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI-L-Y--KK--TQA---VEYND--GAIDTPGEYV-----ENRRLYSALI----VTAA 61 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc-c-c--cc--cee---EEEcC--eeecCchhhh-----hhHHHHHHHH----HHhh
Confidence 799999999999999999998753 1 1 11 111 12222 6899999621 0001122222 2234
Q ss_pred CccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecC
Q 021750 207 TLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSV 286 (308)
Q Consensus 207 ~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~ 286 (308)
.+|++++|+|++++.+..+..+... ...|+++|+||+|+.+... ..+..+++.+... ..+++++||+
T Consensus 62 ~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~-----~~~~~~~Sa~ 128 (142)
T TIGR02528 62 DADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEADV-----DIERAKELLETAG-----AEPIFEISSV 128 (142)
T ss_pred cCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCccc-----CHHHHHHHHHHcC-----CCcEEEEecC
Confidence 5567999999998877655433333 2459999999999875221 2233333333221 2479999999
Q ss_pred CCCCHHHHHHHHH
Q 021750 287 TNQGRDEILLHMA 299 (308)
Q Consensus 287 ~g~gi~el~~~i~ 299 (308)
+|.|++++|+++.
T Consensus 129 ~~~gi~~l~~~l~ 141 (142)
T TIGR02528 129 DEQGLEALVDYLN 141 (142)
T ss_pred CCCCHHHHHHHHh
Confidence 9999999999874
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-20 Score=153.99 Aligned_cols=154 Identities=15% Similarity=0.177 Sum_probs=100.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
||+++|.+|||||||+++++...+.....++.+. .....+.+++ .+.+|||||..... ......++.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~~ 70 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLES-LYSRQVTIDGEQVSLEILDTAGQQQAD---------TEQLERSIR 70 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHH-hceEEEEECCEEEEEEEEECCCCcccc---------cchHHHHHH
Confidence 6899999999999999999986543222222211 1123334444 47899999975310 113344444
Q ss_pred hcCCccEEEEEEeCCCCCChhHH-HHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL-EYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
. ++++++|+|.++..+.... .+..++. ..++|+++|+||+|+..... +..+....+.+..+
T Consensus 71 ~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----v~~~~~~~~~~~~~------ 137 (165)
T cd04146 71 W---ADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQ----VSTEEGEKLASELG------ 137 (165)
T ss_pred h---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCc----cCHHHHHHHHHHcC------
Confidence 4 3558999999987665433 1222222 24799999999999865432 23344445544332
Q ss_pred CCEEEeecCCCC-CHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQ-GRDEILLHMAQLRN 303 (308)
Q Consensus 278 ~~~~~vSA~~g~-gi~el~~~i~~~~~ 303 (308)
.+++++||++|. |++++|+.+.+.+.
T Consensus 138 ~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 138 CLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred CEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 689999999994 99999999987653
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=8e-20 Score=157.03 Aligned_cols=158 Identities=27% Similarity=0.362 Sum_probs=101.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEe-CC-CEEEecCCCcccCCCchhhhhchHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRI-ND-SWYLVDLPGYGYAAAPRELRTDWDKF 197 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~-~~-~~~liDtpG~~~~~~~~~~~~~~~~~ 197 (308)
.++.++|+++|.+|||||||+|++++.+. .....++.|.. ...+.+ +. .+.+|||||+.+... ......+...
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~ 114 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADV--YAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP-HQLVEAFRST 114 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchh--ccCCccceeccceeEEEEecCCceEEEeCCCccccCCC-HHHHHHHHHH
Confidence 35567999999999999999999999753 22333333332 222333 22 799999999854221 1211122222
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCCChhHH----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 198 TKDYFLNRSTLVSVFLLIDASIPAKPIDL----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~viD~~~~~~~~~~----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
+ .....++++++|+|++++....+. ++...+...++|+++|+||+|+..... .. ....
T Consensus 115 ~----~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~---------~~---~~~~-- 176 (204)
T cd01878 115 L----EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE---------LE---ERLE-- 176 (204)
T ss_pred H----HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH---------HH---HHhh--
Confidence 2 122345679999999987655442 222223335789999999999975321 11 1111
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
....+++++||++|.|+++++++|.+.
T Consensus 177 -~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 177 -AGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred -cCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 224689999999999999999999765
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=148.59 Aligned_cols=152 Identities=28% Similarity=0.305 Sum_probs=107.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|+|||||++++++... ......++++.... .+..++ ++.+|||||+.+.....+ .. .....+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~--~~---~~~~~~ 75 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDR-AIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIE--KI---GIERAR 75 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCce-EeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHH--HH---HHHHHH
Confidence 3899999999999999999998753 55667777776542 334444 789999999865332111 00 111122
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
.....++++++|+|++.+.+..+..+... ..++|+++|+||+|+..... . .......++++
T Consensus 76 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~---------~--------~~~~~~~~~~~ 136 (157)
T cd04164 76 EAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSE---------L--------LSLLAGKPIIA 136 (157)
T ss_pred HHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCccc---------c--------ccccCCCceEE
Confidence 22334567999999998777766544443 46799999999999986432 1 11223478999
Q ss_pred eecCCCCCHHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~ 302 (308)
+||+++.|+++++++|.+.+
T Consensus 137 ~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 137 ISAKTGEGLDELKEALLELA 156 (157)
T ss_pred EECCCCCCHHHHHHHHHHhh
Confidence 99999999999999998764
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.5e-20 Score=153.65 Aligned_cols=158 Identities=20% Similarity=0.240 Sum_probs=107.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceec--------------cCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchh
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALT--------------SKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRE 189 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~--------------~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~ 189 (308)
+|+++|.+|+|||||+|+|++....... ....+.+... ..+...+ .+.+|||||..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~------- 73 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHE------- 73 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcH-------
Confidence 4899999999999999999987532211 1112333332 2233333 68999999964
Q ss_pred hhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHH
Q 021750 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQEL 269 (308)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 269 (308)
.+...+..++.. ++++++|+|+..+......++...+...++|+++|+||+|+..... .....+.+.+.
T Consensus 74 ---~~~~~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~-----~~~~~~~~~~~ 142 (189)
T cd00881 74 ---DFSSEVIRGLSV---SDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEED-----LEEVLREIKEL 142 (189)
T ss_pred ---HHHHHHHHHHHh---cCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhc-----HHHHHHHHHHH
Confidence 233345555543 4568999999987766666666666667899999999999986321 22333444444
Q ss_pred HHhhh-----------cCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 270 IQGFF-----------QTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 270 ~~~~~-----------~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
++... ....+++++||++|.|+++++++|.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 143 LGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred HccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 43211 2358899999999999999999998764
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.1e-20 Score=162.85 Aligned_cols=154 Identities=15% Similarity=0.198 Sum_probs=102.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||+++++++++...+.++.+ ......+.+++ .+.+|||+|.. .+..+...++
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~----------~~~~~~~~~~ 69 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH----------PFPAMRRLSI 69 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCCh----------hhhHHHHHHh
Confidence 3799999999999999999998766433333332 12233455554 57799999953 3333444444
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HHHHHhc------------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHH
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EYASWLG------------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQEL 269 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~------------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 269 (308)
.. .+++++|+|.++..++.+. .+..++. ..++|+++|+||+|+....+ +.. +++.+.
T Consensus 70 ~~---ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~----v~~---~ei~~~ 139 (247)
T cd04143 70 LT---GDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE----VQR---DEVEQL 139 (247)
T ss_pred cc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc----cCH---HHHHHH
Confidence 43 3568999999987665443 1222221 14789999999999975332 122 333333
Q ss_pred HHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 270 IQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 270 ~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+... ..+.++++||++|.|++++|++|.++.
T Consensus 140 ~~~~--~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 140 VGGD--ENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred HHhc--CCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 3321 136799999999999999999999865
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-20 Score=158.23 Aligned_cols=147 Identities=16% Similarity=0.257 Sum_probs=104.3
Q ss_pred EcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCC
Q 021750 131 VGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRST 207 (308)
Q Consensus 131 vG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (308)
+|.+|||||||+++++.+.+...+.++.|.+.....+.+++ .+.+|||+|.. +|..++..|++.++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e----------~~~~l~~~~~~~ad~ 70 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQE----------KFGGLRDGYYIQGQC 70 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCch----------hhhhhhHHHhcCCCE
Confidence 69999999999999998765444455555555444455544 68899999953 566677778776554
Q ss_pred ccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 208 LVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 208 ~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
+++|+|.++..+.... ..|+. ..+.|+++|+||+|+.... +..+.. .+.+. ..++|++
T Consensus 71 ---~ilV~D~t~~~S~~~i--~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----v~~~~~-~~~~~------~~~~~~e 133 (200)
T smart00176 71 ---AIIMFDVTARVTYKNV--PNWHRDLVRVCENIPIVLCGNKVDVKDRK-----VKAKSI-TFHRK------KNLQYYD 133 (200)
T ss_pred ---EEEEEECCChHHHHHH--HHHHHHHHHhCCCCCEEEEEECccccccc-----CCHHHH-HHHHH------cCCEEEE
Confidence 8999999987766543 22332 1578999999999986422 122222 22221 2478999
Q ss_pred eecCCCCCHHHHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~~~ 304 (308)
|||++|+||+++|++|.+.+..
T Consensus 134 ~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 134 ISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred EeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999987643
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-20 Score=155.62 Aligned_cols=152 Identities=22% Similarity=0.262 Sum_probs=101.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
.++|+++|.+|||||||++++.+..+ ..+.++.+.+ ...+.+++ ++.+|||||.. .++..+..|+.
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~-~~~~~t~~~~--~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~~~~ 83 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRL-AQHQPTQHPT--SEELAIGNIKFTTFDLGGHQ----------QARRLWKDYFP 83 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCC-cccCCccccc--eEEEEECCEEEEEEECCCCH----------HHHHHHHHHhC
Confidence 36999999999999999999998754 2233333322 33344444 78999999963 34456677765
Q ss_pred hcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh----
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF---- 274 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---- 274 (308)
. ++++++|+|++++.+.... .+...+. ..++|+++|+||+|+.... ..+ ++.+.++-..
T Consensus 84 ~---ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~------~~~---~i~~~l~l~~~~~~ 151 (184)
T smart00178 84 E---VNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA------SED---ELRYALGLTNTTGS 151 (184)
T ss_pred C---CCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC------CHH---HHHHHcCCCccccc
Confidence 4 4559999999876443222 3333332 2579999999999986432 222 3333332110
Q ss_pred -----cCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 275 -----QTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 275 -----~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
.....+++|||++|+|++++++||.+.
T Consensus 152 ~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 152 KGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 123569999999999999999999764
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.7e-20 Score=158.99 Aligned_cols=155 Identities=14% Similarity=0.121 Sum_probs=101.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcc-eeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKL-ALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
+||+++|.+|||||||+++|+++.+. ..+.++.+.+.....+.+++ .+.+|||||... + ....+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~----------~--~~~~~ 68 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM----------W--TEDSC 68 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch----------H--HHhHH
Confidence 48999999999999999999876543 22222222233333444433 688999999530 0 11222
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+.. .++++++|+|+++..++... ++...+. ..++|+++|+||+|+..... +..+..+.+....
T Consensus 69 ~~~--~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~----v~~~~~~~~a~~~------ 136 (221)
T cd04148 69 MQY--QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSRE----VSVQEGRACAVVF------ 136 (221)
T ss_pred hhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccce----ecHHHHHHHHHHc------
Confidence 221 45669999999987665432 2222222 25799999999999976432 2233333433322
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.++++++||++|.|++++|+++.+.+..
T Consensus 137 ~~~~~e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 137 DCKFIETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 3689999999999999999999988753
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.3e-20 Score=151.78 Aligned_cols=154 Identities=18% Similarity=0.148 Sum_probs=97.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE-EEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC-INHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~-~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
||+++|.+|||||||+++|.++.+... .+.+... .....+++ ++.+|||||... +...+..++
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~ 68 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN---VPRVLPEITIPADVTPERVPTTIVDTSSRPQ----------DRANLAAEI 68 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc---CCCcccceEeeeeecCCeEEEEEEeCCCchh----------hhHHHhhhc
Confidence 899999999999999999999865332 2211111 11112222 688999999642 222344444
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHhc--cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWLG--QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~--~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
..++++++|+|.+++.+.... .+...+. ..+.|+++|+||+|+.+..... ...+.+..+.+.+. ...
T Consensus 69 ---~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~----~~~ 139 (166)
T cd01893 69 ---RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQA--GLEEEMLPIMNEFR----EIE 139 (166)
T ss_pred ---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchh--HHHHHHHHHHHHHh----ccc
Confidence 335568999999987666542 1222222 2479999999999997644210 01122222222222 224
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+++++||++|.|++++|+.+.+.+
T Consensus 140 ~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 140 TCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred EEEEeccccccCHHHHHHHHHHHh
Confidence 799999999999999999988764
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.1e-20 Score=153.19 Aligned_cols=151 Identities=19% Similarity=0.188 Sum_probs=101.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
..+|+++|.+|||||||+++++.+++.. ..++.+.+ ...+.+++ ++.+|||||.. .+...+..++.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~~~ 81 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSN--VEEIVYKNIRFLMWDIGGQE----------SLRSSWNTYYT 81 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccc--eEEEEECCeEEEEEECCCCH----------HHHHHHHHHhh
Confidence 4699999999999999999999876532 34444433 33444444 79999999953 34445666665
Q ss_pred hcCCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--hcC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--FQT 276 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 276 (308)
. ++++++|+|+++..+.... ++...+.. .++|+++|+||+|+.... . .+++.+.+... ...
T Consensus 82 ~---~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~------~---~~~i~~~l~~~~~~~~ 149 (174)
T cd04153 82 N---TDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM------T---PAEISESLGLTSIRDH 149 (174)
T ss_pred c---CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC------C---HHHHHHHhCcccccCC
Confidence 4 4569999999876544322 23333322 469999999999987522 1 22233333210 012
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
.++++++||++|+|+++++++|.+
T Consensus 150 ~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 150 TWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred ceEEEecccCCCCCHHHHHHHHhc
Confidence 357999999999999999999864
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-20 Score=149.31 Aligned_cols=156 Identities=22% Similarity=0.247 Sum_probs=124.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe--CC--CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI--ND--SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
.+++.++|++-||||||+..++.+++.....++.|.......++. +. ++.+|||+| ++ +|+++++.
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtag-------qe---rfrsitks 77 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAG-------QE---RFRSITKS 77 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccc-------hH---HHHHHHHH
Confidence 468999999999999999999999886667777776654333333 22 688999999 44 89999999
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-------CCCC-EEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-------NQIP-MTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-------~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
||++.-+ +++|+|.++..++.+. ..|+.+ ..++ +.+|+.|+||...++ +..++.+++.+..+
T Consensus 78 yyrnsvg---vllvyditnr~sfehv--~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq----Vt~EEaEklAa~hg- 147 (213)
T KOG0091|consen 78 YYRNSVG---VLLVYDITNRESFEHV--ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ----VTAEEAEKLAASHG- 147 (213)
T ss_pred Hhhcccc---eEEEEeccchhhHHHH--HHHHHHHHHhcCCCCeeEEEEeccccchhhhcc----ccHHHHHHHHHhcC-
Confidence 9998877 8999999998887764 344432 3444 568999999998776 67888888888876
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
..++++||++|.|++|.|+.+.+.+-..
T Consensus 148 -----M~FVETSak~g~NVeEAF~mlaqeIf~~ 175 (213)
T KOG0091|consen 148 -----MAFVETSAKNGCNVEEAFDMLAQEIFQA 175 (213)
T ss_pred -----ceEEEecccCCCcHHHHHHHHHHHHHHH
Confidence 7899999999999999999998766443
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.5e-20 Score=174.98 Aligned_cols=157 Identities=26% Similarity=0.350 Sum_probs=115.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
+|+++|.+|||||||+|+|++... +.+...+|+|++.. ...+++ .+.+|||||+.... ..+...+......++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~-~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~--~~~~~~~~~~~~~~~- 76 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD-AIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD--DGLDKQIREQAEIAI- 76 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc-ceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcc--hhHHHHHHHHHHHHH-
Confidence 589999999999999999999753 67888899887643 334444 79999999985322 112223323333333
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEe
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 283 (308)
..+|++++|+|+..+.+..+.++..++...++|+++|+||+|+.+... ...++ .. + ...+++++
T Consensus 77 --~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~--------~~~~~---~~--l-g~~~~~~v 140 (429)
T TIGR03594 77 --EEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDA--------VAAEF---YS--L-GFGEPIPI 140 (429)
T ss_pred --hhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccc--------cHHHH---Hh--c-CCCCeEEE
Confidence 445679999999998888888888999888999999999999875321 11221 11 1 12479999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q 021750 284 SSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 284 SA~~g~gi~el~~~i~~~~~ 303 (308)
||++|.|++++++++.+.+.
T Consensus 141 Sa~~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 141 SAEHGRGIGDLLDAILELLP 160 (429)
T ss_pred eCCcCCChHHHHHHHHHhcC
Confidence 99999999999999988763
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.7e-20 Score=150.25 Aligned_cols=152 Identities=21% Similarity=0.347 Sum_probs=113.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
||+++|.+|||||||+++|.+..+.....++.+.......+..++ .+.+||++|.. ++..+...++.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~----------~~~~~~~~~~~ 70 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQE----------RFDSLRDIFYR 70 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSG----------GGHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccc----------ccccccccccc
Confidence 799999999999999999999876555555665555555666655 58899999943 44445555555
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhcc------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLGQ------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..+ ++++|+|.++..+.... ..|+.. ...|++||+||+|+.+.+. +..+.++++.+.++
T Consensus 71 ~~~---~~ii~fd~~~~~S~~~~--~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~----v~~~~~~~~~~~~~------ 135 (162)
T PF00071_consen 71 NSD---AIIIVFDVTDEESFENL--KKWLEEIQKYKPEDIPIIVVGNKSDLSDERE----VSVEEAQEFAKELG------ 135 (162)
T ss_dssp TES---EEEEEEETTBHHHHHTH--HHHHHHHHHHSTTTSEEEEEEETTTGGGGSS----SCHHHHHHHHHHTT------
T ss_pred ccc---ccccccccccccccccc--ccccccccccccccccceeeecccccccccc----chhhHHHHHHHHhC------
Confidence 544 48999999887655543 234331 3689999999999987443 34556666665554
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.+++++||+++.|+.++|..+.+.+.
T Consensus 136 ~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 136 VPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp SEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 78999999999999999999988764
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-20 Score=154.11 Aligned_cols=156 Identities=20% Similarity=0.201 Sum_probs=101.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHHh
Q 021750 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 204 (308)
|+++|.+|||||||++++++..+.....++.+... ...+..++ .+.+|||||.. .+..+...++.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~~- 68 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQE----------DYDRLRPLSYP- 68 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCc----------ccchhchhhcC-
Confidence 58999999999999999999865332222222111 22334444 58899999953 23334444443
Q ss_pred cCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCcccC--------CCCCchhhHHHHHHHHHh
Q 021750 205 RSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKKN--------GGKRPEENLNDFQELIQG 272 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~ 272 (308)
.++++++|+|.++..+..+.. +...+. ..++|+++|+||+|+...... ...+..++.+.+.+.++
T Consensus 69 --~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~- 145 (174)
T smart00174 69 --DTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIG- 145 (174)
T ss_pred --CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcC-
Confidence 345699999999876665431 222222 257999999999999753210 01123333444444432
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..++++|||++|.|++++|+.+.+.+
T Consensus 146 ----~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 146 ----AVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred ----CcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 24799999999999999999998765
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=152.24 Aligned_cols=157 Identities=18% Similarity=0.227 Sum_probs=102.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++++..+.....++.+... ...+..++ .+.+|||||.. ++..+...++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~~ 70 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQD----------EYSILPQKYS 70 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChH----------hhHHHHHHHH
Confidence 4899999999999999999998754322222211111 22233332 57899999953 3444555555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..++ ++++++|.++..+.... .+.+.....+.|+++|+||+|+...+. ...+....+.+.+ .
T Consensus 71 ~~~~---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~----~~~~~~~~~~~~~------~ 137 (180)
T cd04137 71 IGIH---GYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQ----VSTEEGKELAESW------G 137 (180)
T ss_pred hhCC---EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCc----cCHHHHHHHHHHc------C
Confidence 5444 48999999876544332 122222235789999999999875332 1223334443322 2
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+++++||++++|+++++.++.+.+....
T Consensus 138 ~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 138 AAFLESSARENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 68999999999999999999998887653
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.5e-20 Score=154.93 Aligned_cols=155 Identities=25% Similarity=0.279 Sum_probs=101.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
..+|+++|++|||||||++++.+.++ ..+.++.+.+ ...+.+++ .+.+||+||.. .+...+..++.
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~-~~~~~T~~~~--~~~i~~~~~~~~l~D~~G~~----------~~~~~~~~~~~ 85 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRL-AQHVPTLHPT--SEELTIGNIKFKTFDLGGHE----------QARRLWKDYFP 85 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC-cccCCccCcc--eEEEEECCEEEEEEECCCCH----------HHHHHHHHHhc
Confidence 46999999999999999999998754 2333333322 23444544 78899999953 33345566665
Q ss_pred hcCCccEEEEEEeCCCCCChhH--HHHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh------
Q 021750 204 NRSTLVSVFLLIDASIPAKPID--LEYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG------ 272 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~--~~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~------ 272 (308)
.. +++++|+|.++..+... ..+...+. ..+.|+++|+||+|+.... ..+.++.+.+....
T Consensus 86 ~a---d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~ 156 (190)
T cd00879 86 EV---DGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAV------SEEELRQALGLYGTTTGKGV 156 (190)
T ss_pred cC---CEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCc------CHHHHHHHhCcccccccccc
Confidence 44 55899999987544322 12222222 2569999999999986422 23333333221110
Q ss_pred ----hhcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 273 ----FFQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 273 ----~~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
......++++|||++|+|++++|+||.+.
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 157 SLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 01122568999999999999999999875
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=157.74 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=108.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||+++|.+..+...+.++.+.... ..+.+++ .+.+|||+|.. .|..+...+|
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e----------~~~~l~~~~~ 70 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSS----------YYDNVRPLAY 70 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcH----------HHHHHhHHhc
Confidence 48999999999999999999998765444454443332 2344544 58899999943 4455666665
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHHHH
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQEL 269 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~ 269 (308)
... |++++|+|.++..++.... ..|.. ..+.|+++|+||+|+..... ....+..++.+.+.+.
T Consensus 71 ~~~---d~illvfdis~~~Sf~~i~-~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~ 146 (222)
T cd04173 71 PDS---DAVLICFDISRPETLDSVL-KKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQ 146 (222)
T ss_pred cCC---CEEEEEEECCCHHHHHHHH-HHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHH
Confidence 544 5599999999887665531 12221 25799999999999965321 0112345556666655
Q ss_pred HHhhhcCCCCEEEeecCCCCC-HHHHHHHHHHHH
Q 021750 270 IQGFFQTAPPWIMTSSVTNQG-RDEILLHMAQLR 302 (308)
Q Consensus 270 ~~~~~~~~~~~~~vSA~~g~g-i~el~~~i~~~~ 302 (308)
++ ..+|++|||++++| |+++|+.+....
T Consensus 147 ~~-----~~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 147 VG-----AVSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred cC-----CCEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 53 24899999999985 999999988754
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.5e-20 Score=152.83 Aligned_cols=158 Identities=18% Similarity=0.140 Sum_probs=101.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|+|||||+++++++++.....++.+... ...+.+++ .+.+|||||... +..+...++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~ 69 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQED----------YDRLRPLSY 69 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCccc----------ccccccccC
Confidence 4899999999999999999998865433333222111 22344444 367899999642 222232333
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCcccCC--------CCCchhhHHHHHHHH
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKKNG--------GKRPEENLNDFQELI 270 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~~~--------~~~~~~~~~~~~~~~ 270 (308)
. .++++++|+|.++..++.+.. +...+. ..++|+++|+||+|+.+..... ..+..++.+.+.+.+
T Consensus 70 ~---~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 146 (174)
T cd04135 70 P---MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEI 146 (174)
T ss_pred C---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 3 345689999999876655432 222222 3689999999999986542100 112334444444433
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+ ..++++|||++|.|++++|+.+.+.+
T Consensus 147 ~-----~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 147 G-----AHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred C-----CCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 2 24799999999999999999988753
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-19 Score=147.53 Aligned_cols=151 Identities=17% Similarity=0.241 Sum_probs=100.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
||+++|++|||||||++++++..+.....++.+ ......+..++ .+.+||+||.. .+..+...++.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~~~ 69 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQE----------EFSAMRDLYIR 69 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChH----------HHHHHHHHHHh
Confidence 689999999999999999998754322222222 22233444443 57899999953 23345555555
Q ss_pred hcCCccEEEEEEeCCCCCChhHH-H----HHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL-E----YASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~-~----l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
.. +++++|+|.+++.+..+. . +.........|+++|+||+|+..... ...+.+..+.+.+. .
T Consensus 70 ~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~~~~~~~------~ 136 (160)
T cd00876 70 QG---DGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQ----VSKEEGKALAKEWG------C 136 (160)
T ss_pred cC---CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccce----ecHHHHHHHHHHcC------C
Confidence 43 558999999876544332 1 11111224799999999999986332 13334444443332 6
Q ss_pred CEEEeecCCCCCHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
+++++||+++.|+++++++|.+.
T Consensus 137 ~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 137 PFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred cEEEeccCCCCCHHHHHHHHHhh
Confidence 89999999999999999999864
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=152.03 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=100.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||++++.+..+.....++. .......+..++ .+.+|||||.. ++..++..++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~ 69 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQD----------EFDKLRPLCY 69 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCCh----------hhcccccccc
Confidence 489999999999999999999876533222221 111112334444 57899999963 2223333443
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc--CCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHHHHH
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ--NQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQELI 270 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~--~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~ 270 (308)
. .++++++|+|.+++.++.+. .+...+.. .+.|+++|+||+|+..... ....+..++...+.+..
T Consensus 70 ~---~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 146 (173)
T cd04130 70 P---DTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKI 146 (173)
T ss_pred C---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHh
Confidence 3 34569999999987766553 12222222 4699999999999865321 11123444455554433
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMA 299 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~ 299 (308)
+ ..+++++||++|.|++++|+.+.
T Consensus 147 ~-----~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 147 G-----ACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred C-----CCeEEEEeCCCCCCHHHHHHHHH
Confidence 2 24899999999999999998875
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=150.95 Aligned_cols=153 Identities=17% Similarity=0.205 Sum_probs=101.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
+|+++|.+|||||||+++|.+. +...+.++.|.+ ...+..++ .+.+||+||.. +++.++..|+..+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~~~a 67 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDKYEVCIFDLGGGA----------NFRGIWVNYYAEA 67 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECCEEEEEEECCCcH----------HHHHHHHHHHcCC
Confidence 4899999999999999999986 434455555544 23444444 78999999943 4555777777655
Q ss_pred CCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHH-HHHHhhhcCCCC
Q 021750 206 STLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQ-ELIQGFFQTAPP 279 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 279 (308)
+ ++++|+|+++..+..+. .+...+.. .++|+++|+||+|+.+... ..+..+.+. +.+.+.....+.
T Consensus 68 ~---~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~-----~~~i~~~~~l~~~~~~~~~~~~ 139 (167)
T cd04161 68 H---GLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL-----GADVIEYLSLEKLVNENKSLCH 139 (167)
T ss_pred C---EEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC-----HHHHHHhcCcccccCCCCceEE
Confidence 4 58999999986554432 22222222 4789999999999976442 111111110 111111112357
Q ss_pred EEEeecCCC------CCHHHHHHHHHH
Q 021750 280 WIMTSSVTN------QGRDEILLHMAQ 300 (308)
Q Consensus 280 ~~~vSA~~g------~gi~el~~~i~~ 300 (308)
+++|||++| .|+++.|+||.+
T Consensus 140 ~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 140 IEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EEEeEceeCCCCccccCHHHHHHHHhc
Confidence 888999998 899999999964
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-19 Score=147.95 Aligned_cols=146 Identities=19% Similarity=0.210 Sum_probs=94.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRS 206 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (308)
+|+++|.+|||||||+|+|.+... .. . .+. .+.+... .+|||||...... + +.+..+....
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--~~-~---~~~---~v~~~~~-~~iDtpG~~~~~~------~---~~~~~~~~~~ 63 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--LA-R---KTQ---AVEFNDK-GDIDTPGEYFSHP------R---WYHALITTLQ 63 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--cC-c---cce---EEEECCC-CcccCCccccCCH------H---HHHHHHHHHh
Confidence 799999999999999999987531 11 1 111 1122221 2699999753221 1 2222222344
Q ss_pred CccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecC
Q 021750 207 TLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSV 286 (308)
Q Consensus 207 ~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~ 286 (308)
.+|++++|+|++...+.....+... ..++|+++++||+|+.+. ..+ .+.+.+.+. ....|++++||+
T Consensus 64 ~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~-------~~~---~~~~~~~~~-~~~~p~~~~Sa~ 130 (158)
T PRK15467 64 DVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDA-------DVA---ATRKLLLET-GFEEPIFELNSH 130 (158)
T ss_pred cCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcc-------cHH---HHHHHHHHc-CCCCCEEEEECC
Confidence 5677999999997765544333332 246899999999998642 122 233333222 223699999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 021750 287 TNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 287 ~g~gi~el~~~i~~~~~~ 304 (308)
+|+|++++++++.+....
T Consensus 131 ~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 131 DPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred CccCHHHHHHHHHHhchh
Confidence 999999999999988754
|
|
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-19 Score=169.67 Aligned_cols=156 Identities=26% Similarity=0.262 Sum_probs=109.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchH-HHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWD-KFTKD 200 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~-~~~~~ 200 (308)
.++|+++|.||||||||+|+|++.++ ++++..+|+|++.. .+.+++ .+.+|||||+.+.....+ .+. .....
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~-aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie---~~gi~~~~~ 278 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDR-AIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVE---RLGIEKSFK 278 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHH---HHHHHHHHH
Confidence 35999999999999999999999754 56788999998753 445555 789999999864321111 110 11123
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCE
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW 280 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (308)
++ ..+|++++|+|++++.+..+. +...+...++|+++|+||+|+... + .+.+.+.+ ..++
T Consensus 279 ~~---~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-~---------~~~~~~~~------~~~~ 338 (442)
T TIGR00450 279 AI---KQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-S---------LEFFVSSK------VLNS 338 (442)
T ss_pred HH---hhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-c---------hhhhhhhc------CCce
Confidence 33 345669999999987766554 334444457999999999998642 1 22222222 2578
Q ss_pred EEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 281 IMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 281 ~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
+++||++ .|++++++.+.+.+...
T Consensus 339 ~~vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 339 SNLSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred EEEEEec-CCHHHHHHHHHHHHHHH
Confidence 9999998 69999999988877653
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-19 Score=143.23 Aligned_cols=154 Identities=23% Similarity=0.307 Sum_probs=122.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
-.+||+++|..|||||+|+.++..+-+.+-...+.|....+..+++++ ++.+|||+| ++ +|+++...
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtag-------qe---rfrsitqs 75 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAG-------QE---RFRSITQS 75 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccc-------hH---HHHHHHHH
Confidence 357999999999999999999999877766677778877788888876 689999999 44 89999999
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
||+.+.. +++|+|.+...++..+ -+|+. ..++--|+|+||+|+.+.++ ++....+++.+...
T Consensus 76 yyrsaha---lilvydiscqpsfdcl--pewlreie~yan~kvlkilvgnk~d~~drre----vp~qigeefs~~qd--- 143 (213)
T KOG0095|consen 76 YYRSAHA---LILVYDISCQPSFDCL--PEWLREIEQYANNKVLKILVGNKIDLADRRE----VPQQIGEEFSEAQD--- 143 (213)
T ss_pred Hhhhcce---EEEEEecccCcchhhh--HHHHHHHHHHhhcceEEEeeccccchhhhhh----hhHHHHHHHHHhhh---
Confidence 9998876 8999999987776553 33333 24556689999999988765 45666666666543
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.-++++||++.+|++.||..+.-.+
T Consensus 144 ---myfletsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 144 ---MYFLETSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred ---hhhhhhcccchhhHHHHHHHHHHHH
Confidence 4578999999999999998876443
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-19 Score=172.16 Aligned_cols=156 Identities=24% Similarity=0.317 Sum_probs=112.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+|+|++.+. +.+...+++|++. ....+++ .+.+|||||+..... .....+......+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~-~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~--~~~~~~~~~~~~~- 77 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRD-AIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD--GFEKQIREQAELA- 77 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-eeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcch--hHHHHHHHHHHHH-
Confidence 6899999999999999999998754 5677888888754 3344544 799999999864211 1111222223333
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
...+|++++|+|+..+.+..+.++..|+...++|+++|+||+|+.+. .....++ .. ++ ...+++
T Consensus 78 --~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~--------~~~~~~~---~~--lg-~~~~~~ 141 (435)
T PRK00093 78 --IEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDE--------EADAYEF---YS--LG-LGEPYP 141 (435)
T ss_pred --HHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccc--------hhhHHHH---Hh--cC-CCCCEE
Confidence 34456799999999888888878888888889999999999996541 1112222 11 11 134899
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~ 301 (308)
+||++|.|++++++++.+.
T Consensus 142 iSa~~g~gv~~l~~~I~~~ 160 (435)
T PRK00093 142 ISAEHGRGIGDLLDAILEE 160 (435)
T ss_pred EEeeCCCCHHHHHHHHHhh
Confidence 9999999999999999873
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=153.96 Aligned_cols=159 Identities=26% Similarity=0.366 Sum_probs=112.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcce-----------ec-----cCCCCceEE--EEEEE--eCC-CEEEecCCCccc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLA-----------LT-----SKTPGKTQC--INHFR--IND-SWYLVDLPGYGY 183 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~-----------~~-----~~~~~~t~~--~~~~~--~~~-~~~liDtpG~~~ 183 (308)
..+|+++|..++|||||+++|+...... .. ....+.|.. ...+. ... .+.++||||...
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 4589999999999999999999643110 00 011233332 22333 233 799999999531
Q ss_pred CCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhH
Q 021750 184 AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENL 263 (308)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~ 263 (308)
+..........+|++++|+|+..+......++..++...++|+++|+||+|+...+ ..+..
T Consensus 83 -------------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~------~~~~~ 143 (188)
T PF00009_consen 83 -------------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKE------LEEII 143 (188)
T ss_dssp -------------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHH------HHHHH
T ss_pred -------------eeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhh------HHHHH
Confidence 55555566677788999999999988888888888888999999999999998332 34445
Q ss_pred HHHHHHH-Hhhhc---CCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 264 NDFQELI-QGFFQ---TAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 264 ~~~~~~~-~~~~~---~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+++.+.+ +.... ...+++++||++|.|+++|++.|.+.+
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 144 EEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred HHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 5555333 22211 136899999999999999999998875
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=150.08 Aligned_cols=149 Identities=17% Similarity=0.228 Sum_probs=99.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRS 206 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (308)
|+++|.+|||||||+++|++..+.....++.|.. ...+...+ ++.+|||||.. +++.++..|+..++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~~----------~~~~~~~~~~~~ad 69 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN--SVAIPTQDAIMELLEIGGSQ----------NLRKYWKRYLSGSQ 69 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc--eEEEeeCCeEEEEEECCCCc----------chhHHHHHHHhhCC
Confidence 7999999999999999999876544444444432 22233333 78999999953 34557777776655
Q ss_pred CccEEEEEEeCCCCCChhHH--HHHHHhc-cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHH--Hhh-hcCCCCE
Q 021750 207 TLVSVFLLIDASIPAKPIDL--EYASWLG-QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELI--QGF-FQTAPPW 280 (308)
Q Consensus 207 ~~~~vl~viD~~~~~~~~~~--~l~~~~~-~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~ 280 (308)
. +++|+|.++..+.... .+..+.. ..++|+++|+||+|+..... ..++.+.+ ... -...+++
T Consensus 70 ~---ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~---------~~~i~~~~~~~~~~~~~~~~~ 137 (164)
T cd04162 70 G---LIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARS---------VQEIHKELELEPIARGRRWIL 137 (164)
T ss_pred E---EEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCC---------HHHHHHHhCChhhcCCCceEE
Confidence 4 8999999876543322 2233332 26899999999999875432 22221111 111 1124678
Q ss_pred EEeecCC------CCCHHHHHHHHHH
Q 021750 281 IMTSSVT------NQGRDEILLHMAQ 300 (308)
Q Consensus 281 ~~vSA~~------g~gi~el~~~i~~ 300 (308)
+++||++ ++|++++|+.+..
T Consensus 138 ~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 138 QGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred EEeeecCCCChhHHHHHHHHHHHHhc
Confidence 8999888 9999999998764
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-19 Score=152.42 Aligned_cols=155 Identities=15% Similarity=0.197 Sum_probs=99.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
||+++|.+|||||||++++++.++.....++... .....+.+++ .+.+|||||.. .+..+...++.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~~~~ 69 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEE-MHRKEYEVGGVSLTLDILDTSGSY----------SFPAMRKLSIQ 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhh-heeEEEEECCEEEEEEEEECCCch----------hhhHHHHHHhh
Confidence 6899999999999999999997653322222221 2223344444 57899999953 33334445544
Q ss_pred hcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
. ++++++|+|.+++.+..+. .+.......++|+++|+||+|+...... +..+... +.... ....
T Consensus 70 ~---ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~---v~~~~~~---~~~~~--~~~~ 138 (198)
T cd04147 70 N---SDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQ---VPAKDAL---STVEL--DWNC 138 (198)
T ss_pred c---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccccc---ccHHHHH---HHHHh--hcCC
Confidence 4 4559999999876554432 1222222357999999999998753110 1111111 11111 1236
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+++++||++|.|++++|++|.+.+.
T Consensus 139 ~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 139 GFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred cEEEecCCCCCCHHHHHHHHHHHhh
Confidence 7999999999999999999998654
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-19 Score=170.77 Aligned_cols=153 Identities=27% Similarity=0.326 Sum_probs=108.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+|+|++.+. ..+++.+++|++.. .+.+++ .+.+|||||+.+.....+ .+ ..+...
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~-a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie---~~--gi~~~~ 289 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEER-AIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVE---KI--GIERSR 289 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHH---HH--HHHHHH
Confidence 5999999999999999999999753 56788899887643 344555 799999999864221111 00 011112
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
.....+|++++|+|++++.+..+.++.. ...++|+++|+||+|+..... .. . ....++++
T Consensus 290 ~~~~~aD~il~VvD~s~~~s~~~~~~l~--~~~~~piiiV~NK~DL~~~~~---------~~------~---~~~~~~i~ 349 (449)
T PRK05291 290 EAIEEADLVLLVLDASEPLTEEDDEILE--ELKDKPVIVVLNKADLTGEID---------LE------E---ENGKPVIR 349 (449)
T ss_pred HHHHhCCEEEEEecCCCCCChhHHHHHH--hcCCCCcEEEEEhhhccccch---------hh------h---ccCCceEE
Confidence 2334456799999999887665543322 245799999999999975321 11 1 12367999
Q ss_pred eecCCCCCHHHHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+||++|+|+++++++|.+.+..
T Consensus 350 iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 350 ISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred EEeeCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999988754
|
|
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-19 Score=145.84 Aligned_cols=150 Identities=19% Similarity=0.195 Sum_probs=99.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
.|+++|++|||||||+++|.+.++.....++.+ .....+..+. .+.+|||||.. .+...+..++..+
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~~~~~~ 68 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVG--FNMRKVTKGNVTLKVWDLGGQP----------RFRSMWERYCRGV 68 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCC--cceEEEEECCEEEEEEECCCCH----------hHHHHHHHHHhcC
Confidence 489999999999999999999866443333333 2223333343 68899999953 4455666666544
Q ss_pred CCccEEEEEEeCCCCCChhH--HHHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH--hhhcCCC
Q 021750 206 STLVSVFLLIDASIPAKPID--LEYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ--GFFQTAP 278 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~--~~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 278 (308)
+++++|+|++....... ..+..++. ..++|+++|+||+|+..... .+++.+.+. .......
T Consensus 69 ---d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~ 136 (159)
T cd04159 69 ---NAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS---------VDELIEQMNLKSITDREV 136 (159)
T ss_pred ---CEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC---------HHHHHHHhCcccccCCce
Confidence 45899999987543322 12222222 25789999999999875321 222222221 1112336
Q ss_pred CEEEeecCCCCCHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~ 300 (308)
+++++||++|.|+++++++|.+
T Consensus 137 ~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 137 SCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EEEEEEeccCCChHHHHHHHhh
Confidence 7899999999999999999875
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-19 Score=147.53 Aligned_cols=148 Identities=15% Similarity=0.154 Sum_probs=99.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
||+++|.+|||||||+.+++...+.....+..+ .....+.+++ .+.+|||+|... ..|+.
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~--~~~~~i~~~~~~~~l~i~D~~g~~~---------------~~~~~ 64 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG--RFKKEVLVDGQSHLLLIRDEGGAPD---------------AQFAS 64 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc--ceEEEEEECCEEEEEEEEECCCCCc---------------hhHHh
Confidence 799999999999999999988765433322211 1223455554 478899999531 12333
Q ss_pred hcCCccEEEEEEeCCCCCChhHH-HHHHHhc----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL-EYASWLG----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
. ++++++|+|.++..++.+. .+...+. ..+.|+++|+||+|+..... ..+..+..+++.+..+ .+
T Consensus 65 ~---~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~--~~v~~~~~~~~~~~~~-----~~ 134 (158)
T cd04103 65 W---VDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNP--RVIDDARARQLCADMK-----RC 134 (158)
T ss_pred c---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCC--cccCHHHHHHHHHHhC-----CC
Confidence 3 4569999999998877663 2222221 14689999999999853211 1134444555554332 37
Q ss_pred CEEEeecCCCCCHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
+|++|||++|.||+++|+.+.+.
T Consensus 135 ~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 135 SYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred cEEEEecCCCCCHHHHHHHHHhh
Confidence 89999999999999999998754
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-19 Score=178.64 Aligned_cols=162 Identities=20% Similarity=0.263 Sum_probs=116.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEE--EeCC-CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHF--RIND-SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.||||||||+|+|++.+. +.+.+.+|+|++.... .+++ .+.+|||||+..... .+...+.....
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~-~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~--~~~~~~~~~~~ 349 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRRE-AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVE--GIDSAIASQAQ 349 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCc--cHHHHHHHHHH
Confidence 3456999999999999999999998754 6788899999875443 3334 799999999764221 12222333333
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCC
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPP 279 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (308)
.++. .+|++++|+|++.+....+.++..++...++|+++|+||+|+.... ... .+.+.. . ...
T Consensus 350 ~~~~---~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~--------~~~---~~~~~l--g-~~~ 412 (712)
T PRK09518 350 IAVS---LADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASE--------YDA---AEFWKL--G-LGE 412 (712)
T ss_pred HHHH---hCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccch--------hhH---HHHHHc--C-CCC
Confidence 3333 4566999999998888777778888888899999999999986421 111 122211 1 124
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 280 WIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 280 ~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.+++||++|.|+++++++|.+.+..
T Consensus 413 ~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 413 PYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred eEEEECCCCCCchHHHHHHHHhccc
Confidence 6799999999999999999987643
|
|
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.7e-19 Score=151.19 Aligned_cols=150 Identities=20% Similarity=0.246 Sum_probs=96.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC--Ccceec------------cCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCch
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR--KKLALT------------SKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPR 188 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~--~~~~~~------------~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~ 188 (308)
.+|+++|.+|||||||+++|++. .+.... ....|++.... .+..++ .+.+|||||..
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~------ 76 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHA------ 76 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcH------
Confidence 48999999999999999999972 221111 11234444332 233333 78999999964
Q ss_pred hhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHH
Q 021750 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQE 268 (308)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 268 (308)
+|...+..++...+ ++++|+|++++.......+..++...++|+++|+||+|+.... .....+++.+
T Consensus 77 ----~~~~~~~~~~~~~d---~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~------~~~~~~~~~~ 143 (194)
T cd01891 77 ----DFGGEVERVLSMVD---GVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDAR------PEEVVDEVFD 143 (194)
T ss_pred ----HHHHHHHHHHHhcC---EEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCC------HHHHHHHHHH
Confidence 45556666666554 5899999987654443344444445689999999999997532 2233444444
Q ss_pred HHHhh----hcCCCCEEEeecCCCCCHHHH
Q 021750 269 LIQGF----FQTAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 269 ~~~~~----~~~~~~~~~vSA~~g~gi~el 294 (308)
.+... -....+++++||++|.|+.++
T Consensus 144 ~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 144 LFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred HHHHhCCccccCccCEEEeehhcccccccc
Confidence 43221 112478999999999887554
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=142.71 Aligned_cols=155 Identities=21% Similarity=0.273 Sum_probs=123.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
+..+|++++|..|.|||+|+.+++.+++-...+.+.|.......+.+++ ++.+|||+| ++ +|++..+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAG-------QE---rFRSVtR 76 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAG-------QE---RFRSVTR 76 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeeccc-------HH---HHHHHHH
Confidence 4467999999999999999999999887777888888887766777766 688999999 44 8999999
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
.||+.+.+ .++|+|.++..++.. +..|+. ..++-+++++||.||...++ +.-.+..++.+.-
T Consensus 77 sYYRGAAG---AlLVYD~Tsrdsfna--LtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~----VtflEAs~FaqEn--- 144 (214)
T KOG0086|consen 77 SYYRGAAG---ALLVYDITSRDSFNA--LTNWLTDARTLASPNIVVILCGNKKDLDPERE----VTFLEASRFAQEN--- 144 (214)
T ss_pred HHhccccc---eEEEEeccchhhHHH--HHHHHHHHHhhCCCcEEEEEeCChhhcChhhh----hhHHHHHhhhccc---
Confidence 99999888 689999998877654 456665 36778999999999987765 3444444444332
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
...+.++||++|+|++|.|-...+.+
T Consensus 145 ---el~flETSa~TGeNVEEaFl~c~~tI 170 (214)
T KOG0086|consen 145 ---ELMFLETSALTGENVEEAFLKCARTI 170 (214)
T ss_pred ---ceeeeeecccccccHHHHHHHHHHHH
Confidence 26789999999999999887655443
|
|
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-19 Score=149.46 Aligned_cols=158 Identities=17% Similarity=0.233 Sum_probs=99.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||++++.+..+...+.++.+... ...+.+++ .+.+|||||.. .+..+...++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~ 70 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQE----------DYDRLRPLSY 70 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCch----------hhhhcccccc
Confidence 5899999999999999999999765443333333222 22344443 57899999953 2222332333
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCcccC--------CCCCchhhHHHHHHHH
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKKN--------GGKRPEENLNDFQELI 270 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~~ 270 (308)
..++++++|+|.++..+..+.. +...+. ..++|+++|+||+|+...... ...+.....+.+.+.+
T Consensus 71 ---~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~ 147 (175)
T cd01870 71 ---PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKI 147 (175)
T ss_pred ---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHc
Confidence 3445688999998765544431 111111 147999999999998753210 0011122233333322
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+ ..++++|||++|.|++++|++|.+..
T Consensus 148 ~-----~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 148 G-----AFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred C-----CcEEEEeccccCcCHHHHHHHHHHHh
Confidence 1 25799999999999999999998653
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-19 Score=152.20 Aligned_cols=155 Identities=21% Similarity=0.171 Sum_probs=100.4
Q ss_pred CeEEEEcCCCCCHHHHHH-HHhcCCc-----ceeccCCCCc-eEEEEE--------EEeCC---CEEEecCCCcccCCCc
Q 021750 126 PEFALVGRSNVGKSSLLN-SLVRRKK-----LALTSKTPGK-TQCINH--------FRIND---SWYLVDLPGYGYAAAP 187 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin-~l~~~~~-----~~~~~~~~~~-t~~~~~--------~~~~~---~~~liDtpG~~~~~~~ 187 (308)
.||+++|.+|||||||+. ++.+..+ ...+.++.+. ...... ..+++ .+.+|||+|...
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~---- 78 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD---- 78 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh----
Confidence 599999999999999996 6655432 1112222221 111111 12333 688999999531
Q ss_pred hhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHH--HHHHhcc--CCCCEEEEeecCCCCCccc----------
Q 021750 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLE--YASWLGQ--NQIPMTLVFTKCDKRKKKK---------- 253 (308)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~~--~~~pvivV~NK~Dl~~~~~---------- 253 (308)
.+...|++ .++++++|+|.++..+..+.. +...+.. .+.|+++|+||+|+.+...
T Consensus 79 --------~~~~~~~~---~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~ 147 (195)
T cd01873 79 --------KDRRFAYG---RSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPL 147 (195)
T ss_pred --------hhhcccCC---CCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhccccc
Confidence 12233444 445699999999887766542 2222221 4789999999999864210
Q ss_pred -----CCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 254 -----NGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 254 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
....+..++.+.+.+.++ ++|++|||++|+||+++|+.+.+.
T Consensus 148 ~~~~~~~~~V~~~e~~~~a~~~~------~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 148 ARPIKNADILPPETGRAVAKELG------IPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccccccCCccCHHHHHHHHHHhC------CEEEEcCCCCCCCHHHHHHHHHHh
Confidence 012356667777776654 689999999999999999998764
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.3e-19 Score=147.50 Aligned_cols=152 Identities=16% Similarity=0.219 Sum_probs=99.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
..++|+++|++|||||||++++.+... ....++.|.+. ..+..++ .+.+||+||.. .+...+..++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~-~~~~~t~g~~~--~~i~~~~~~~~~~D~~G~~----------~~~~~~~~~~ 79 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDI-SHITPTQGFNI--KTVQSDGFKLNVWDIGGQR----------AIRPYWRNYF 79 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCC-cccCCCCCcce--EEEEECCEEEEEEECCCCH----------HHHHHHHHHh
Confidence 367999999999999999999998743 23444444332 2333444 78899999953 2333455554
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh--hhc
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG--FFQ 275 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 275 (308)
. .++++++|+|++...+..+. .+...+ ...++|+++++||+|+..... .+++.+.++. ...
T Consensus 80 ~---~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---------~~~i~~~l~~~~~~~ 147 (173)
T cd04155 80 E---NTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP---------AEEIAEALNLHDLRD 147 (173)
T ss_pred c---CCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC---------HHHHHHHcCCcccCC
Confidence 3 34569999999865433221 111222 235799999999999875321 3334333321 111
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
...+++++||++|+|++++++||.+
T Consensus 148 ~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 148 RTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CeEEEEEeECCCCCCHHHHHHHHhc
Confidence 1235789999999999999999975
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-19 Score=149.07 Aligned_cols=156 Identities=19% Similarity=0.188 Sum_probs=97.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++|++..+.....++... ........++ .+.+|||||..+. ..+...++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~D~~g~~~~----------~~~~~~~~ 69 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFD-NYSATVTVDGKQVNLGLWDTAGQEEY----------DRLRPLSY 69 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccc----------cccchhhc
Confidence 48999999999999999999998652222222111 1112222332 5889999996531 11222333
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHhc--cCCCCEEEEeecCCCCCcccCC-------CCCchhhHHHHHHHHH
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWLG--QNQIPMTLVFTKCDKRKKKKNG-------GKRPEENLNDFQELIQ 271 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~--~~~~pvivV~NK~Dl~~~~~~~-------~~~~~~~~~~~~~~~~ 271 (308)
..++++++|+|.++..+.... .+...+. ..++|+++|+||+|+.+..... ..+..+...++....+
T Consensus 70 ---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 146 (171)
T cd00157 70 ---PNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIG 146 (171)
T ss_pred ---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhC
Confidence 334569999999876555442 1222222 2469999999999998654310 0112222333322222
Q ss_pred hhhcCCCCEEEeecCCCCCHHHHHHHHHH
Q 021750 272 GFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 272 ~~~~~~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
..+++++||++|+|+++++++|.+
T Consensus 147 -----~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 147 -----AIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred -----CeEEEEeecCCCCCHHHHHHHHhh
Confidence 238999999999999999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-19 Score=139.13 Aligned_cols=158 Identities=17% Similarity=0.230 Sum_probs=122.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-C--CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-D--SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~--~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
+.++|+.++|.+.||||||+-+.++..+....-.+.|....+..+.-. . ++.+|||.|. | +++.+.-
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagq-------E---ryrtiTT 88 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQ-------E---RYRTITT 88 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccc-------h---hhhHHHH
Confidence 556799999999999999999999987654444455655554433222 2 5889999994 3 5777888
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHh------ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWL------GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~------~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
.||+.+.+ +++++|.++..++... ..|. ...+.|+|+|+||||+.+++. +..+....+.+.++
T Consensus 89 ayyRgamg---fiLmyDitNeeSf~sv--qdw~tqIktysw~naqvilvgnKCDmd~eRv----is~e~g~~l~~~LG-- 157 (193)
T KOG0093|consen 89 AYYRGAMG---FILMYDITNEESFNSV--QDWITQIKTYSWDNAQVILVGNKCDMDSERV----ISHERGRQLADQLG-- 157 (193)
T ss_pred HHhhccce---EEEEEecCCHHHHHHH--HHHHHHheeeeccCceEEEEecccCCcccee----eeHHHHHHHHHHhC--
Confidence 88888776 7999999987665443 2232 236899999999999988765 56778888888886
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
..+|++||+.+.|++++|+.+...+...
T Consensus 158 ----fefFEtSaK~NinVk~~Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 158 ----FEFFETSAKENINVKQVFERLVDIICDK 185 (193)
T ss_pred ----hHHhhhcccccccHHHHHHHHHHHHHHH
Confidence 6899999999999999999998887654
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=164.27 Aligned_cols=159 Identities=18% Similarity=0.243 Sum_probs=106.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC--CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND--SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
.+.++|+++|.||||||||+|+|++.+.. +++.+++|.+. ..+.+.+ .+.+|||||+.... ...+...|...
T Consensus 195 ~~~p~ValVG~~NaGKSSLlN~Lt~~~~~--v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l-p~~lve~f~~t- 270 (426)
T PRK11058 195 ADVPTVSLVGYTNAGKSTLFNRITEARVY--AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHL-PHDLVAAFKAT- 270 (426)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcee--eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccC-CHHHHHHHHHH-
Confidence 35689999999999999999999997642 55666666653 2343433 78999999984321 22222222222
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHH----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDL----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
+.....+|++++|+|++++....+. ++...+...++|+++|+||+|+..... .... ...
T Consensus 271 ---l~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-------~~~~----~~~--- 333 (426)
T PRK11058 271 ---LQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-------PRID----RDE--- 333 (426)
T ss_pred ---HHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh-------HHHH----HHh---
Confidence 2334556779999999987655443 223333345799999999999874211 1111 111
Q ss_pred cCCCC-EEEeecCCCCCHHHHHHHHHHHHH
Q 021750 275 QTAPP-WIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 275 ~~~~~-~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
...+ ++++||++|+|+++++++|.+.+.
T Consensus 334 -~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 334 -ENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred -cCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 1123 589999999999999999998774
|
|
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.1e-19 Score=147.62 Aligned_cols=154 Identities=23% Similarity=0.263 Sum_probs=96.8
Q ss_pred EEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeC-C-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIN-D-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 130 lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~-~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
++|++|||||||+|+|++.+. .+...+++|... ..+.++ + .+.+|||||+.+.....+ .+...++...
T Consensus 1 iiG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~------~~~~~~~~~~ 72 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP--KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGR------GLGNQFLAHI 72 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc--cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCC------CccHHHHHHH
Confidence 589999999999999999753 345555555443 334444 3 789999999854221111 1222333333
Q ss_pred CCccEEEEEEeCCCCC------ChhHH-----HHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHH
Q 021750 206 STLVSVFLLIDASIPA------KPIDL-----EYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQE 268 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~------~~~~~-----~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 268 (308)
..++++++|+|+++.. ...+. ++..+.. ..++|+++|+||+|+..... ...+.
T Consensus 73 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~---------~~~~~- 142 (176)
T cd01881 73 RRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE---------LEEEL- 142 (176)
T ss_pred hccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH---------HHHHH-
Confidence 4466799999998763 22221 1111111 14799999999999975432 11111
Q ss_pred HHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 269 LIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 269 ~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
..........+++++||+++.|++++++++.++
T Consensus 143 ~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 143 VRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 011112234789999999999999999998765
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-19 Score=149.80 Aligned_cols=155 Identities=23% Similarity=0.277 Sum_probs=108.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
....+|+++|..|||||||+++|...+. ..+.++. ......+.+++ .+.+||.+|-. .++.+|+.|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~-~~~~pT~--g~~~~~i~~~~~~~~~~d~gG~~----------~~~~~w~~y 78 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEI-SETIPTI--GFNIEEIKYKGYSLTIWDLGGQE----------SFRPLWKSY 78 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSE-EEEEEES--SEEEEEEEETTEEEEEEEESSSG----------GGGGGGGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccc-cccCccc--ccccceeeeCcEEEEEEeccccc----------cccccceee
Confidence 4456999999999999999999998643 2333333 34455666666 89999999942 345577787
Q ss_pred HHhcCCccEEEEEEeCCCCCChhH--HHHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH-hhh-
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPID--LEYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ-GFF- 274 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~--~~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~- 274 (308)
+... ++++||+|+++.....+ .++...+. ..++|++|++||+|+.+.. .. +++.+.+. ..+
T Consensus 79 ~~~~---~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~------~~---~~i~~~l~l~~l~ 146 (175)
T PF00025_consen 79 FQNA---DGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM------SE---EEIKEYLGLEKLK 146 (175)
T ss_dssp HTTE---SEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS------TH---HHHHHHTTGGGTT
T ss_pred cccc---ceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc------hh---hHHHhhhhhhhcc
Confidence 7654 45999999997654332 23344443 3679999999999988643 22 33333332 111
Q ss_pred -cCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 275 -QTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 275 -~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
...+.++.|||.+|+|+.+.++||.+.+
T Consensus 147 ~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 147 NKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp SSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred cCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 2457789999999999999999998753
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=149.03 Aligned_cols=158 Identities=20% Similarity=0.210 Sum_probs=99.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCc-ceeccCCCCceEEEE--EEE----------------------------------e
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKK-LALTSKTPGKTQCIN--HFR----------------------------------I 169 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~-~~~~~~~~~~t~~~~--~~~----------------------------------~ 169 (308)
+|+++|..|+|||||+.+|.+... ........+.+.... .+. .
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 699999999999999999976410 000000001111100 000 0
Q ss_pred CCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCC-CChhHHHHHHHhccCC-CCEEEEeecCC
Q 021750 170 NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIP-AKPIDLEYASWLGQNQ-IPMTLVFTKCD 247 (308)
Q Consensus 170 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~-~~~~~~~l~~~~~~~~-~pvivV~NK~D 247 (308)
..++.+|||||.. .+...++.....+|++++|+|++.+ ......+...++...+ .|+++|+||+|
T Consensus 82 ~~~i~~iDtPG~~-------------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~D 148 (203)
T cd01888 82 VRHVSFVDCPGHE-------------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKID 148 (203)
T ss_pred ccEEEEEECCChH-------------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchh
Confidence 1468999999942 2666777777778889999999874 2222222333333333 57999999999
Q ss_pred CCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 248 KRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+..... .....+++.+.+........+++++||++|+|+++++++|.+.+
T Consensus 149 l~~~~~-----~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 149 LVKEEQ-----ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred ccCHHH-----HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 975321 12223444444433222347899999999999999999998754
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=174.20 Aligned_cols=161 Identities=21% Similarity=0.247 Sum_probs=114.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEE--EEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH--FRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.+|+++|.||||||||+|+|++.+ ..+.+.+|+|.+... +..++ ++.++||||+..-....+....-+...+.|+
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~--~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 589999999999999999999875 357788999987543 33444 7999999998542211000001112444554
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
.. ...|++++|+|+++.... ..+...+.+.++|+++|+||+|+.+.+. ...+.+++.+.++ +++++
T Consensus 82 ~~-~~aD~vI~VvDat~ler~--l~l~~ql~e~giPvIvVlNK~Dl~~~~~-----i~id~~~L~~~LG------~pVvp 147 (772)
T PRK09554 82 LS-GDADLLINVVDASNLERN--LYLTLQLLELGIPCIVALNMLDIAEKQN-----IRIDIDALSARLG------CPVIP 147 (772)
T ss_pred hc-cCCCEEEEEecCCcchhh--HHHHHHHHHcCCCEEEEEEchhhhhccC-----cHHHHHHHHHHhC------CCEEE
Confidence 43 345789999999875443 3344555667899999999999875432 3344555555553 79999
Q ss_pred eecCCCCCHHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~ 302 (308)
+||++|+|++++.+.+.+..
T Consensus 148 iSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 148 LVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEeecCCCHHHHHHHHHHhh
Confidence 99999999999999998764
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-18 Score=145.76 Aligned_cols=149 Identities=18% Similarity=0.249 Sum_probs=101.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCC------c---ce-----eccCCCCceEEEEEEEe--CC-CEEEecCCCcccCCCch
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRK------K---LA-----LTSKTPGKTQCINHFRI--ND-SWYLVDLPGYGYAAAPR 188 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~------~---~~-----~~~~~~~~t~~~~~~~~--~~-~~~liDtpG~~~~~~~~ 188 (308)
.+|+++|.+++|||||+++|++.. . .. ......|+|.......+ ++ ++.++||||+.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~------ 76 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA------ 76 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH------
Confidence 479999999999999999998631 0 00 01113466665433333 33 79999999964
Q ss_pred hhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhHHHHH
Q 021750 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENLNDFQ 267 (308)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~~~~~ 267 (308)
.+....+.....+|++++|+|+..+...+..++..++...++| +|+|+||+|+....+ ..+...+++.
T Consensus 77 -------~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~----~~~~~~~~i~ 145 (195)
T cd01884 77 -------DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEE----LLELVEMEVR 145 (195)
T ss_pred -------HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHH----HHHHHHHHHH
Confidence 2555666667778889999999988777777777888778887 779999999974221 0111223344
Q ss_pred HHHHhhh--cCCCCEEEeecCCCCCH
Q 021750 268 ELIQGFF--QTAPPWIMTSSVTNQGR 291 (308)
Q Consensus 268 ~~~~~~~--~~~~~~~~vSA~~g~gi 291 (308)
+.+.... ...++++++||++|.|+
T Consensus 146 ~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 146 ELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHhcccccCCeEEEeeCccccCC
Confidence 4443321 13488999999999985
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-18 Score=148.20 Aligned_cols=157 Identities=22% Similarity=0.249 Sum_probs=106.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcce-----ec-------cCCCCceEE--------------------------EEEEE
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLA-----LT-------SKTPGKTQC--------------------------INHFR 168 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~-----~~-------~~~~~~t~~--------------------------~~~~~ 168 (308)
||+++|..++|||||+++|....+.. .. ....|.|.. ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999999643211 00 000111110 01112
Q ss_pred eCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhc--CCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeec
Q 021750 169 IND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR--STLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTK 245 (308)
Q Consensus 169 ~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK 245 (308)
..+ .+.++||||+. + +.+..+... ...|++++|+|+..+....+.++..++...++|+++|+||
T Consensus 81 ~~~~~i~liDtpG~~----------~---~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK 147 (224)
T cd04165 81 KSSKLVTFIDLAGHE----------R---YLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTK 147 (224)
T ss_pred eCCcEEEEEECCCcH----------H---HHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEC
Confidence 222 68999999963 2 333333333 2467899999999988888888899999899999999999
Q ss_pred CCCCCcccCCCCCchhhHHHHHHHHHh-----------------------hhcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 246 CDKRKKKKNGGKRPEENLNDFQELIQG-----------------------FFQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 246 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
+|+.+... ..+..+++.+.+.. .+...+|+|.+||.+|+|+++|.+.|..+
T Consensus 148 ~D~~~~~~-----~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 148 IDLAPANI-----LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred ccccCHHH-----HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 99875332 33444455444431 12234699999999999999999888653
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.4e-18 Score=166.55 Aligned_cols=160 Identities=23% Similarity=0.288 Sum_probs=111.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCccee-ccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLAL-TSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~-~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.|+++|.+|+|||||+++|++...... ....+|.|.+.. .+..++ .+.+|||||.. . +.+.++
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe----------~---f~~~~~ 68 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE----------K---FISNAI 68 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH----------H---HHHHHH
Confidence 589999999999999999997431011 123456665543 344444 78999999953 2 455555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh-hcCCCCE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF-FQTAPPW 280 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 280 (308)
.....+|++++|+|++.+...+..+...++...++| +++|+||+|+.+... .....+++.+.+... +....++
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~-----~~~~~~ei~~~l~~~~~~~~~~i 143 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEE-----IKRTEMFMKQILNSYIFLKNAKI 143 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHH-----HHHHHHHHHHHHHHhCCCCCCcE
Confidence 666677889999999987666655556666667888 999999999975331 111122333333322 1124799
Q ss_pred EEeecCCCCCHHHHHHHHHHHHHH
Q 021750 281 IMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 281 ~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+++||++|+|+++++++|.+++..
T Consensus 144 i~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 144 FKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHh
Confidence 999999999999999999887765
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=164.16 Aligned_cols=158 Identities=21% Similarity=0.281 Sum_probs=109.0
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEe-CC-CEEEecCCCcccCCCchhhhhchHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRI-ND-SWYLVDLPGYGYAAAPRELRTDWDKF 197 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~-~~-~~~liDtpG~~~~~~~~~~~~~~~~~ 197 (308)
....++|+++|.+|+|||||+++|.+.++. ....+|+|.... .+.+ ++ .+.+|||||+. .|..+
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~--~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe----------~F~~~ 151 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVA--QGEAGGITQHIGAYHVENEDGKMITFLDTPGHE----------AFTSM 151 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc--cccCCceeecceEEEEEECCCcEEEEEECCCCc----------chhhH
Confidence 345679999999999999999999987532 233456665543 3333 33 79999999964 33334
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH---hhh
Q 021750 198 TKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ---GFF 274 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~---~~~ 274 (308)
+. +....+|++++|+|++++...+..+...++...++|+++++||+|+.+.. .+.+.......+ ..+
T Consensus 152 r~---rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~-------~e~v~~~L~~~g~~~~~~ 221 (587)
T TIGR00487 152 RA---RGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEAN-------PDRVKQELSEYGLVPEDW 221 (587)
T ss_pred HH---hhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCC-------HHHHHHHHHHhhhhHHhc
Confidence 33 34556677999999998776666666666666789999999999996532 112222211111 112
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
....+++++||++|+|+++++++|...
T Consensus 222 ~~~~~~v~iSAktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 222 GGDTIFVPVSALTGDGIDELLDMILLQ 248 (587)
T ss_pred CCCceEEEEECCCCCChHHHHHhhhhh
Confidence 223679999999999999999998643
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=135.31 Aligned_cols=156 Identities=25% Similarity=0.370 Sum_probs=104.3
Q ss_pred EEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEE--Ee--CCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHF--RI--NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 130 lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
++|.+|+|||||+++|++... ......++++...... .. ...+.+|||||+.+...... .+......++.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~---~~~~~~~~~~~-- 74 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEV-AIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGR---EREELARRVLE-- 74 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccc-cccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchh---hHHHHHHHHHH--
Confidence 589999999999999998643 3344555555543322 22 33899999999876432221 11113333333
Q ss_pred CCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHH--HHHHhhhcCCCCEEEe
Q 021750 206 STLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQ--ELIQGFFQTAPPWIMT 283 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v 283 (308)
.++++++|+|++.........+.......+.|+++|+||+|+..... ..... ...........+++++
T Consensus 75 -~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 144 (163)
T cd00880 75 -RADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEE---------EEELLELRLLILLLLLGLPVIAV 144 (163)
T ss_pred -hCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhh---------HHHHHHHHHhhcccccCCceEEE
Confidence 34569999999988777665544455557899999999999986432 22221 1111222345899999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 021750 284 SSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 284 SA~~g~gi~el~~~i~~~ 301 (308)
||+++.|++++++++.+.
T Consensus 145 sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 145 SALTGEGIDELREALIEA 162 (163)
T ss_pred eeeccCCHHHHHHHHHhh
Confidence 999999999999999875
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-18 Score=144.00 Aligned_cols=159 Identities=17% Similarity=0.191 Sum_probs=98.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|+|||||++++....+.....++.+... ...+..++ .+.+|||+|.... ..+...++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~----------~~~~~~~~ 70 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEY----------ERLRPLSY 70 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhc----------cccchhhc
Confidence 3899999999999999999987654332222221111 22333333 4789999996421 11222222
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCcccC------CCCCchhhHHHHHHHHHh
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKKN------GGKRPEENLNDFQELIQG 272 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~~------~~~~~~~~~~~~~~~~~~ 272 (308)
..++++++++|.++..+..+.. +...+. ..+.|+++|+||+|+...... ...+..+....+.+.++
T Consensus 71 ---~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 146 (187)
T cd04129 71 ---SKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIG- 146 (187)
T ss_pred ---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhC-
Confidence 3345689999998766554431 222221 246999999999998542210 01122233444444332
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..++|++||++|.|++++|+++.+.+-
T Consensus 147 ----~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 147 ----AKKYMECSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred ----CcEEEEccCCCCCCHHHHHHHHHHHHh
Confidence 247999999999999999999987654
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=132.61 Aligned_cols=159 Identities=16% Similarity=0.147 Sum_probs=115.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
...+|.++|..|+||||++++|.+.. ...++ |...+.+....+++ ++.+||..|.. .++++|++||
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~-~~~i~--pt~gf~Iktl~~~~~~L~iwDvGGq~----------~lr~~W~nYf 81 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGED-TDTIS--PTLGFQIKTLEYKGYTLNIWDVGGQK----------TLRSYWKNYF 81 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCC-ccccC--CccceeeEEEEecceEEEEEEcCCcc----------hhHHHHHHhh
Confidence 36799999999999999999999974 23333 34445566666666 89999999953 5777999999
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
...++ +++|+|.++....++. ++...+. ..+.|++|+.||.|+...-. .+.+....+.-.-.-...
T Consensus 82 estdg---lIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~------~~~i~~~~~L~~l~ks~~ 152 (185)
T KOG0073|consen 82 ESTDG---LIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALS------LEEISKALDLEELAKSHH 152 (185)
T ss_pred hccCe---EEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccC------HHHHHHhhCHHHhccccC
Confidence 88776 8999999887665553 3333333 26799999999999985432 222322211111112235
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
++++-|||.+|+++.+-++|++.-+.+
T Consensus 153 ~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 153 WRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred ceEEEEeccccccHHHHHHHHHHHHHH
Confidence 899999999999999999999987665
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-18 Score=148.29 Aligned_cols=151 Identities=20% Similarity=0.213 Sum_probs=93.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceec------------------------------cCCCCceEEEE--EEEeCC-CE
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALT------------------------------SKTPGKTQCIN--HFRIND-SW 173 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~------------------------------~~~~~~t~~~~--~~~~~~-~~ 173 (308)
+|+++|.+|+|||||+++|+..... +. ....|+|.+.. .+..++ ++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKS-IFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceE
Confidence 5899999999999999999864321 11 01245666542 333444 79
Q ss_pred EEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCC-CEEEEeecCCCCCcc
Q 021750 174 YLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQI-PMTLVFTKCDKRKKK 252 (308)
Q Consensus 174 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~-pvivV~NK~Dl~~~~ 252 (308)
.++||||+. + +..........+|++++|+|++.+..........++...+. ++|+|+||+|+....
T Consensus 80 ~liDTpG~~----------~---~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~ 146 (208)
T cd04166 80 IIADTPGHE----------Q---YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYS 146 (208)
T ss_pred EEEECCcHH----------H---HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCC
Confidence 999999963 2 22333334456677999999998766555444455554454 578899999987422
Q ss_pred cCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHH
Q 021750 253 KNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el 294 (308)
.. .......++.+.+........+++++||++|.|+++.
T Consensus 147 ~~---~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 147 EE---VFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HH---HHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 10 0111122332222222112357999999999999753
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=135.52 Aligned_cols=147 Identities=26% Similarity=0.319 Sum_probs=92.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
+||+++|.+|+|||||++++.+... .....++++.... .+..++ .+.+||+||.. .+..++..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~ 69 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKF--ITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE----------DYRAIRRL 69 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC--cCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc----------cchHHHHH
Confidence 5899999999999999999999863 3344455555443 244444 57889999953 22334444
Q ss_pred HHHhcCCccEEEEEEeCCCC-CCh------hHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 201 YFLNRSTLVSVFLLIDASIP-AKP------IDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~-~~~------~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
++.... .++.++|.... ... ....+..... .+.|+++|+||+|+.... ..+...+.+...
T Consensus 70 ~~~~~~---~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~---------~~~~~~~~~~~~ 136 (161)
T TIGR00231 70 YYRAVE---SSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAK---------LKTHVAFLFAKL 136 (161)
T ss_pred HHhhhh---EEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcch---------hhHHHHHHHhhc
Confidence 443333 25556665543 111 1112222222 278999999999997532 112222222221
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMA 299 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~ 299 (308)
...+++++||++|.|+++++++|.
T Consensus 137 --~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 137 --NGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred --cCCceEEeecCCCCCHHHHHHHhh
Confidence 135799999999999999999874
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-17 Score=143.69 Aligned_cols=156 Identities=17% Similarity=0.229 Sum_probs=105.1
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
....+||+++|.+|||||||+++++.+.+.....++.+.......+..++ .+.+|||+|.. .+..+.
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~----------~~~~~~ 75 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE----------KFGGLR 75 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCch----------hhhhhh
Confidence 34457999999999999999998877655444555555554444443333 68899999943 334455
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
..|+... +++++|+|.++..+..+. ..|+. ..+.|+++|+||+|+.+... ..+. ..+.+.
T Consensus 76 ~~~~~~~---~~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~-----~~~~-~~~~~~---- 140 (215)
T PTZ00132 76 DGYYIKG---QCAIIMFDVTSRITYKNV--PNWHRDIVRVCENIPIVLVGNKVDVKDRQV-----KARQ-ITFHRK---- 140 (215)
T ss_pred HHHhccC---CEEEEEEECcCHHHHHHH--HHHHHHHHHhCCCCCEEEEEECccCccccC-----CHHH-HHHHHH----
Confidence 5666544 448999999877665443 22321 24689999999999864321 1121 122221
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
....++++||++|.|++++|.+|.+.+..
T Consensus 141 --~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 141 --KNLQYYDISAKSNYNFEKPFLWLARRLTN 169 (215)
T ss_pred --cCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 13679999999999999999999887643
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-17 Score=141.42 Aligned_cols=173 Identities=20% Similarity=0.229 Sum_probs=110.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCC---ceEEEEEEEeC--CCEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPG---KTQCINHFRIN--DSWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~---~t~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
.+|+++|.+|||||||+|+|++...........+ ++.....+... ..+.+|||||+.+.....+ .+++.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~------~~l~~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPD------DYLEE 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHH------HHHHH
Confidence 5899999999999999999998543211111111 22222233222 3789999999875322111 12222
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCC----CchhhHHHHHHHHHhhhc-
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGK----RPEENLNDFQELIQGFFQ- 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~~~~- 275 (308)
.....+|+++++.| ...+..+..+..++...++|+++|+||||+......... ...+.++++.+.+...+.
T Consensus 76 --~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 151 (197)
T cd04104 76 --MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE 151 (197)
T ss_pred --hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence 11234455666643 345666767777777778999999999999643221000 023445566666655443
Q ss_pred ---CCCCEEEeecC--CCCCHHHHHHHHHHHHHHHHhC
Q 021750 276 ---TAPPWIMTSSV--TNQGRDEILLHMAQLRNYWLKH 308 (308)
Q Consensus 276 ---~~~~~~~vSA~--~g~gi~el~~~i~~~~~~~~~~ 308 (308)
...++|.+|+. .++++..|.+.|...+..+++|
T Consensus 152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 34789999999 6899999999999999887765
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=166.94 Aligned_cols=159 Identities=21% Similarity=0.309 Sum_probs=109.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
....+.|+++|..|+|||||+++|.+.... .....|.|.... .+.+++ .+++|||||+. .|..++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~--~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe----------~F~~m~ 354 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVA--AGEAGGITQHIGAYQVETNGGKITFLDTPGHE----------AFTAMR 354 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc--ccccCceeeeccEEEEEECCEEEEEEECCCCc----------cchhHH
Confidence 345679999999999999999999876532 233455655543 333434 79999999964 333344
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHH--HHHhhhcC
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQE--LIQGFFQT 276 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 276 (308)
. +....+|++++|+|++++...+..+...++...++|+|||+||+|+.... ......++.+ .+.+.+..
T Consensus 355 ~---rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~------~e~V~~eL~~~~~~~e~~g~ 425 (787)
T PRK05306 355 A---RGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGAN------PDRVKQELSEYGLVPEEWGG 425 (787)
T ss_pred H---hhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccC------HHHHHHHHHHhcccHHHhCC
Confidence 3 33455677999999998776666666667777889999999999996532 1111222211 11111223
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
.++++++||++|+|+++++++|...
T Consensus 426 ~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 426 DTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred CceEEEEeCCCCCCchHHHHhhhhh
Confidence 4789999999999999999998754
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.4e-18 Score=162.57 Aligned_cols=158 Identities=25% Similarity=0.341 Sum_probs=121.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEE--EEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH--FRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.+|+++|.||||||||.|+|++.+ ..+...||+|..... +...+ ++.++|+||.-.-.... .-+...++|+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~--q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S----~DE~Var~~l 77 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN--QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYS----EDEKVARDFL 77 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC--ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCC----chHHHHHHHH
Confidence 469999999999999999999985 678999999987643 44444 79999999985422111 1123777777
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
.+ ...|+++.|+|+++-+... .+.-.+.+.++|+++++|++|..+.+. ..-+.+++.+.++ +|+++
T Consensus 78 l~-~~~D~ivnVvDAtnLeRnL--yltlQLlE~g~p~ilaLNm~D~A~~~G-----i~ID~~~L~~~LG------vPVv~ 143 (653)
T COG0370 78 LE-GKPDLIVNVVDATNLERNL--YLTLQLLELGIPMILALNMIDEAKKRG-----IRIDIEKLSKLLG------VPVVP 143 (653)
T ss_pred hc-CCCCEEEEEcccchHHHHH--HHHHHHHHcCCCeEEEeccHhhHHhcC-----CcccHHHHHHHhC------CCEEE
Confidence 64 3458899999999754433 334455578999999999999887654 4556778888886 99999
Q ss_pred eecCCCCCHHHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~~ 303 (308)
+||++|+|++++++.+.+...
T Consensus 144 tvA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 144 TVAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred EEeecCCCHHHHHHHHHHhcc
Confidence 999999999999999886543
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.77 E-value=9e-18 Score=165.21 Aligned_cols=151 Identities=26% Similarity=0.301 Sum_probs=106.0
Q ss_pred cCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCc
Q 021750 132 GRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTL 208 (308)
Q Consensus 132 G~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (308)
|.||||||||+|++++.. ..+.+.+|+|.+.. .+.+++ ++.+|||||......... -....+.|+.. ...
T Consensus 1 G~pNvGKSSL~N~Ltg~~--~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~----~e~v~~~~l~~-~~a 73 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN--QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL----EEEVARDYLLN-EKP 73 (591)
T ss_pred CCCCCCHHHHHHHHhCCC--CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccch----HHHHHHHHHhh-cCC
Confidence 899999999999999975 35778899988653 344444 789999999854221111 11245555443 356
Q ss_pred cEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCC
Q 021750 209 VSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTN 288 (308)
Q Consensus 209 ~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g 288 (308)
|++++|+|+++.... ..+...+.+.++|+++|+||+|+.+... ...+.+.+.+.++ .+++++||++|
T Consensus 74 DvvI~VvDat~ler~--l~l~~ql~~~~~PiIIVlNK~Dl~~~~~-----i~~d~~~L~~~lg------~pvv~tSA~tg 140 (591)
T TIGR00437 74 DLVVNVVDASNLERN--LYLTLQLLELGIPMILALNLVDEAEKKG-----IRIDEEKLEERLG------VPVVPTSATEG 140 (591)
T ss_pred CEEEEEecCCcchhh--HHHHHHHHhcCCCEEEEEehhHHHHhCC-----ChhhHHHHHHHcC------CCEEEEECCCC
Confidence 889999999874332 2333344456899999999999875432 2223444444443 78999999999
Q ss_pred CCHHHHHHHHHHHH
Q 021750 289 QGRDEILLHMAQLR 302 (308)
Q Consensus 289 ~gi~el~~~i~~~~ 302 (308)
+|++++++++.+..
T Consensus 141 ~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 141 RGIERLKDAIRKAI 154 (591)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998764
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.9e-19 Score=139.07 Aligned_cols=156 Identities=21% Similarity=0.269 Sum_probs=117.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC--------C----CEEEecCCCcccCCCchhhhhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN--------D----SWYLVDLPGYGYAAAPRELRTD 193 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~--------~----~~~liDtpG~~~~~~~~~~~~~ 193 (308)
+|...+|.+||||||++.++..+++...--.+.|+....+.+.++ + .+.+|||+| +| +
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG-------QE---R 79 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG-------QE---R 79 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeecccc-------HH---H
Confidence 477889999999999999999886543333333443332222221 1 378999999 44 8
Q ss_pred hHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-------CCCCEEEEeecCCCCCcccCCCCCchhhHHHH
Q 021750 194 WDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDF 266 (308)
Q Consensus 194 ~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~ 266 (308)
|+++.-.|++.+-+ .++++|.++..++.+. ..|+.. .+.-+++++||+||.+.+. +.+++...+
T Consensus 80 FRSLTTAFfRDAMG---FlLiFDlT~eqSFLnv--rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~----Vs~~qa~~L 150 (219)
T KOG0081|consen 80 FRSLTTAFFRDAMG---FLLIFDLTSEQSFLNV--RNWLSQLQTHAYCENPDIVLCGNKADLEDQRV----VSEDQAAAL 150 (219)
T ss_pred HHHHHHHHHHhhcc---ceEEEeccchHHHHHH--HHHHHHHHHhhccCCCCEEEEcCccchhhhhh----hhHHHHHHH
Confidence 89999999998887 6899999987776653 455542 4566899999999998765 567777777
Q ss_pred HHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 267 QELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 267 ~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+.++ .|||++||-+|.|+++..+.+.+++-++.
T Consensus 151 a~kyg------lPYfETSA~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 151 ADKYG------LPYFETSACTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred HHHhC------CCeeeeccccCcCHHHHHHHHHHHHHHHH
Confidence 77775 89999999999999999888887766543
|
|
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=129.87 Aligned_cols=154 Identities=20% Similarity=0.304 Sum_probs=120.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
..++|-.++|.-|||||+|+..+...++++.-..+.|.......+++.+ ++.+|||.| ++ +|+...+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtag-------qe---rfravtr 78 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG-------QE---RFRAVTR 78 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeeccc-------HH---HHHHHHH
Confidence 4568999999999999999999999888766666666666555666655 688999999 44 8899999
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
.||+.+.+ .++|+|.+...+... +..|+.. .+..+++++||.|+...++ +..++.+++.+.-+
T Consensus 79 syyrgaag---almvyditrrstynh--lsswl~dar~ltnpnt~i~lignkadle~qrd----v~yeeak~faeeng-- 147 (215)
T KOG0097|consen 79 SYYRGAAG---ALMVYDITRRSTYNH--LSSWLTDARNLTNPNTVIFLIGNKADLESQRD----VTYEEAKEFAEENG-- 147 (215)
T ss_pred HHhccccc---eeEEEEehhhhhhhh--HHHHHhhhhccCCCceEEEEecchhhhhhccc----CcHHHHHHHHhhcC--
Confidence 99999888 689999987655544 3556643 5667899999999987765 56677777766543
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
..++++||++|+|+++.|-...+.
T Consensus 148 ----l~fle~saktg~nvedafle~akk 171 (215)
T KOG0097|consen 148 ----LMFLEASAKTGQNVEDAFLETAKK 171 (215)
T ss_pred ----eEEEEecccccCcHHHHHHHHHHH
Confidence 779999999999999876554433
|
|
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-17 Score=146.95 Aligned_cols=177 Identities=21% Similarity=0.206 Sum_probs=114.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
....|+++|.||||||||.|.+++.+. ..++..+.||+.. ..+.-+. +++++||||+........ .....++...
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv-~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~-~~l~~s~lq~ 148 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKV-SAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRR-HHLMMSVLQN 148 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCcc-ccccccccceeeeeeEEEecCceEEEEecCCcccccchhhh-HHHHHHhhhC
Confidence 345899999999999999999999854 6677777777753 2333333 899999999986443221 1122234444
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-cCCCCEEEEeecCCCCCcccCC----CCCchhhHHHHHHHHHhhhc
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-QNQIPMTLVFTKCDKRKKKKNG----GKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-~~~~pvivV~NK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 275 (308)
+-.....+|+|+.|+|+++.-......++..+. -..+|-++|.||+|....+..- .......+....-.+.+.|.
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~ 228 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFT 228 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhc
Confidence 555666778899999999654444433344333 2579999999999988654310 00011111111112222221
Q ss_pred -------------C--CCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 276 -------------T--APPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 276 -------------~--~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+ +..+|.+||++|+||+++.+||....
T Consensus 229 ~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 229 DVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred cCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 1 24589999999999999999987653
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-17 Score=164.06 Aligned_cols=160 Identities=21% Similarity=0.310 Sum_probs=108.1
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE----EEEe---CCCEEEecCCCcccCCCchhhhhch
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN----HFRI---NDSWYLVDLPGYGYAAAPRELRTDW 194 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~----~~~~---~~~~~liDtpG~~~~~~~~~~~~~~ 194 (308)
....+.|+++|.+|+|||||+++|.+..+. ....+|.|.... .+.. +..+.+|||||+. .|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~--~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe----------~F 308 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIA--QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE----------AF 308 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCc--cccCCccccccceEEEEEEecCCceEEEEEECCcHH----------HH
Confidence 345679999999999999999999986532 222334443321 1222 1379999999953 44
Q ss_pred HHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHH--HHh
Q 021750 195 DKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQEL--IQG 272 (308)
Q Consensus 195 ~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~ 272 (308)
..++..++. .+|++++|+|++++...+..+...++...++|+++|+||+|+.... .....+.+... +..
T Consensus 309 ~~mr~rg~~---~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~------~e~v~~eL~~~~ll~e 379 (742)
T CHL00189 309 SSMRSRGAN---VTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANAN------TERIKQQLAKYNLIPE 379 (742)
T ss_pred HHHHHHHHH---HCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccC------HHHHHHHHHHhccchH
Confidence 445555443 4566999999998776666666666777789999999999997532 11111222111 111
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.++..++++++||++|+|+++++++|..+.
T Consensus 380 ~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 380 KWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred hhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 122247899999999999999999998764
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-17 Score=161.71 Aligned_cols=159 Identities=18% Similarity=0.234 Sum_probs=111.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEEEEEEe---CC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCINHFRI---ND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~~~~~~---~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
-|+++|.+++|||||+++|++.+... ......|.|.+.....+ ++ .+.+|||||+. + +.+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe----------~---fi~~m 68 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE----------K---FLSNM 68 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH----------H---HHHHH
Confidence 48999999999999999999743111 12233567765533222 23 57899999952 2 55555
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCE
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW 280 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (308)
......+|++++|+|++.+...+..+...++...++| ++||+||+|+.+... .....+++.+.+........++
T Consensus 69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~-----~~~v~~ei~~~l~~~~~~~~~i 143 (614)
T PRK10512 69 LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEAR-----IAEVRRQVKAVLREYGFAEAKL 143 (614)
T ss_pred HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHH-----HHHHHHHHHHHHHhcCCCCCcE
Confidence 5666778889999999988777777777777766777 579999999975321 2222334444443322224789
Q ss_pred EEeecCCCCCHHHHHHHHHHHHH
Q 021750 281 IMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 281 ~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
|++||++|+|+++|+++|.++..
T Consensus 144 i~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 144 FVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred EEEeCCCCCCCHHHHHHHHHhhc
Confidence 99999999999999999987654
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-17 Score=160.26 Aligned_cols=156 Identities=22% Similarity=0.257 Sum_probs=104.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCC-------cceeccC------CCCceEEEEE--EEe---CC---CEEEecCCCccc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRK-------KLALTSK------TPGKTQCINH--FRI---ND---SWYLVDLPGYGY 183 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~-------~~~~~~~------~~~~t~~~~~--~~~---~~---~~~liDtpG~~~ 183 (308)
+.+|+++|.+++|||||+++|+... +...+.+ ..|.|..... +.+ ++ .+.+|||||+.
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~- 81 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV- 81 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH-
Confidence 4589999999999999999998742 1111211 2356654322 222 22 58999999975
Q ss_pred CCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhH
Q 021750 184 AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENL 263 (308)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~ 263 (308)
+|...+..++..+ |++++|+|++++.+.+......+....++|+++|+||+|+.... ..+..
T Consensus 82 ---------dF~~~v~~~l~~a---D~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~------~~~~~ 143 (595)
T TIGR01393 82 ---------DFSYEVSRSLAAC---EGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSAD------PERVK 143 (595)
T ss_pred ---------HHHHHHHHHHHhC---CEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC------HHHHH
Confidence 3444555565554 45899999998877666543333345689999999999986422 22223
Q ss_pred HHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 264 NDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+++.+.++. ....++++||++|.|+++++++|.+.+
T Consensus 144 ~el~~~lg~---~~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 144 KEIEEVIGL---DASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred HHHHHHhCC---CcceEEEeeccCCCCHHHHHHHHHHhC
Confidence 344443321 113589999999999999999998765
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-17 Score=155.35 Aligned_cols=167 Identities=24% Similarity=0.234 Sum_probs=114.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCccc-CCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGY-AAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~-~~~~~~~~~~~~~~~~~~ 201 (308)
++|+|+|+||||||||+|+|.+.+. .++++.+|+|++.. .+++++ .+.+.||+|+.+ ....-| .+ -....
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~dr-sIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE---~~--gI~rA 342 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSREDR-SIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIE---AL--GIERA 342 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCc-eEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhH---HH--hHHHH
Confidence 5999999999999999999999865 89999999999863 455566 899999999987 222222 10 11222
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc------------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHH
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ------------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQEL 269 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~------------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 269 (308)
......+|++++|+|+.......+..+.+.+.. ...|++++.||.|+...-... ....+......
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~---~~~~~~~~~~~ 419 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEM---TKIPVVYPSAE 419 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccc---cCCceeccccc
Confidence 244455678999999976666666655555542 347899999999998652110 00000011111
Q ss_pred HHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 270 IQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 270 ~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.. +......++|+++++|++.|.+.+.+.+..
T Consensus 420 ~~---~~~~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 420 GR---SVFPIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred cC---cccceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 11 122445669999999999999999887654
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.1e-17 Score=159.66 Aligned_cols=163 Identities=21% Similarity=0.270 Sum_probs=103.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCC-ceEEEE--EEE----------------eC---CCEEEecCCCcc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPG-KTQCIN--HFR----------------IN---DSWYLVDLPGYG 182 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~-~t~~~~--~~~----------------~~---~~~~liDtpG~~ 182 (308)
.|-|+++|.+|+|||||+|+|.+... ....+| +|.... .+. +. ..+.+|||||+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v---~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAV---AKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccc---ccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 45799999999999999999998743 222222 222111 000 00 138899999953
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCC-----
Q 021750 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGK----- 257 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~----- 257 (308)
.|..++..++. .+|++++|+|++++...+..+...++...++|+++|+||+|+.........
T Consensus 81 ----------~f~~l~~~~~~---~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e 147 (590)
T TIGR00491 81 ----------AFTNLRKRGGA---LADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFME 147 (590)
T ss_pred ----------hHHHHHHHHHh---hCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHH
Confidence 34445555443 455699999999877766666666777778999999999999742110000
Q ss_pred ---Cchh--------hHHHHHHHHHh------------hhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 258 ---RPEE--------NLNDFQELIQG------------FFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 258 ---~~~~--------~~~~~~~~~~~------------~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.... ....+...+.+ .+....+++++||++|+|+++|+.+|..+..
T Consensus 148 ~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 148 SFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 0000 00111111111 1223479999999999999999999876554
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-17 Score=144.23 Aligned_cols=162 Identities=20% Similarity=0.233 Sum_probs=108.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...+.|++.|.||||||||++.+++.+ +.+.++|.||..+ .++..++ ++.++||||+.+...... .......-
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~Ak--pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~Er--N~IE~qAi 241 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAK--PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEER--NEIERQAI 241 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCC--CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHh--cHHHHHHH
Confidence 466799999999999999999999986 6788999998864 5666665 899999999976432211 11111111
Q ss_pred HHHHhcCCccEEEEEEeCCCC--CChhH-HHHHHHh-ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 200 DYFLNRSTLVSVFLLIDASIP--AKPID-LEYASWL-GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~--~~~~~-~~l~~~~-~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
..+....+ +|+|++|++.. .+... ..+...+ ...+.|+++|+||+|..+. +.+++....+....
T Consensus 242 ~AL~hl~~--~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~---------e~~~~~~~~~~~~~- 309 (346)
T COG1084 242 LALRHLAG--VILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADE---------EKLEEIEASVLEEG- 309 (346)
T ss_pred HHHHHhcC--eEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccch---------hHHHHHHHHHHhhc-
Confidence 22233343 59999999853 33222 1222222 2356899999999998853 33445444443322
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
......+++..+.+++.+...+...
T Consensus 310 -~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 310 -GEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred -cccccceeeeehhhHHHHHHHHHHH
Confidence 2446788999999999888777665
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-17 Score=130.78 Aligned_cols=142 Identities=25% Similarity=0.294 Sum_probs=98.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
.||+++|++|+|||||+++|.+.+. .+.. |..+ .+.+. ++||||--- +.+.+.+..+..+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~--~~~K----Tq~i---~~~~~--~IDTPGEyi---------E~~~~y~aLi~ta 61 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI--RYKK----TQAI---EYYDN--TIDTPGEYI---------ENPRFYHALIVTA 61 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC--CcCc----ccee---Eeccc--EEECChhhe---------eCHHHHHHHHHHH
Confidence 4899999999999999999998642 1222 2222 22233 499999321 2233555666667
Q ss_pred CCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeec
Q 021750 206 STLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSS 285 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA 285 (308)
..+++|++|.|++.+.....-.+... ..+|+|-|+||+|+..+ .++++...+.+.... ...+|++|+
T Consensus 62 ~dad~V~ll~dat~~~~~~pP~fa~~---f~~pvIGVITK~Dl~~~--------~~~i~~a~~~L~~aG--~~~if~vS~ 128 (143)
T PF10662_consen 62 QDADVVLLLQDATEPRSVFPPGFASM---FNKPVIGVITKIDLPSD--------DANIERAKKWLKNAG--VKEIFEVSA 128 (143)
T ss_pred hhCCEEEEEecCCCCCccCCchhhcc---cCCCEEEEEECccCccc--------hhhHHHHHHHHHHcC--CCCeEEEEC
Confidence 77889999999998766544333333 46999999999999842 233555555554432 246799999
Q ss_pred CCCCCHHHHHHHHHH
Q 021750 286 VTNQGRDEILLHMAQ 300 (308)
Q Consensus 286 ~~g~gi~el~~~i~~ 300 (308)
.+|+|+++|.++|.+
T Consensus 129 ~~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 129 VTGEGIEELKDYLEE 143 (143)
T ss_pred CCCcCHHHHHHHHhC
Confidence 999999999999853
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-17 Score=139.50 Aligned_cols=156 Identities=17% Similarity=0.257 Sum_probs=118.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
..||+++|.+|||||+|+.++....+...+.++...+. ...+.+++ .+.++||+|.. ++..+...|
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y-~k~~~v~~~~~~l~ilDt~g~~----------~~~~~~~~~ 71 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSY-RKELTVDGEVCMLEILDTAGQE----------EFSAMRDLY 71 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCccccc-eEEEEECCEEEEEEEEcCCCcc----------cChHHHHHh
Confidence 35899999999999999999999988776666666333 34444444 57799999932 455577777
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHh----ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWL----GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~----~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+...++ .++|++.++..++... .+...+ .....|+++|+||+|+...+. +..++.+.+...+.
T Consensus 72 ~~~~~g---F~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~----V~~eeg~~la~~~~----- 139 (196)
T KOG0395|consen 72 IRNGDG---FLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQ----VSEEEGKALARSWG----- 139 (196)
T ss_pred hccCcE---EEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccc----cCHHHHHHHHHhcC-----
Confidence 777766 6888888887777654 222222 235689999999999998654 56777777755553
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
++++++||+.+.+++++|..+.+.++.
T Consensus 140 -~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 140 -CAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred -CcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 789999999999999999999987765
|
|
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-18 Score=137.54 Aligned_cols=155 Identities=18% Similarity=0.233 Sum_probs=113.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.|||+++|..-||||||+-+++.++|....-.+....+....+.+++ .+.+|||+|.. +|..+-.-|
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQE----------rfHALGPIY 82 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQE----------RFHALGPIY 82 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchH----------hhhccCceE
Confidence 57999999999999999999999876432211111111111222222 68899999943 555566678
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
|+..++ +++|+|.++..+++.. ..|..+ ..+-++||+||+||.+.+. +..++.+.+.+..+
T Consensus 83 YRgSnG---alLVyDITDrdSFqKV--KnWV~Elr~mlGnei~l~IVGNKiDLEeeR~----Vt~qeAe~YAesvG---- 149 (218)
T KOG0088|consen 83 YRGSNG---ALLVYDITDRDSFQKV--KNWVLELRTMLGNEIELLIVGNKIDLEEERQ----VTRQEAEAYAESVG---- 149 (218)
T ss_pred EeCCCc---eEEEEeccchHHHHHH--HHHHHHHHHHhCCeeEEEEecCcccHHHhhh----hhHHHHHHHHHhhc----
Confidence 888777 7999999988777653 445443 5688999999999987765 45666667766665
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..++++||+.+.||.|+|+.+.+.+-+
T Consensus 150 --A~y~eTSAk~N~Gi~elFe~Lt~~MiE 176 (218)
T KOG0088|consen 150 --ALYMETSAKDNVGISELFESLTAKMIE 176 (218)
T ss_pred --hhheecccccccCHHHHHHHHHHHHHH
Confidence 779999999999999999999876544
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-17 Score=128.96 Aligned_cols=113 Identities=34% Similarity=0.475 Sum_probs=83.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
+|+|+|.+|+|||||+|+|++.+ ...++..+++|... ..+.+++ .+.++||||+.+...... +......++.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~-~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~----~~~~~~~~~~ 75 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK-LAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDN----DGKEIRKFLE 75 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST-SSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHH----HHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccc-cccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhH----HHHHHHHHHH
Confidence 69999999999999999999854 35677778877765 3444555 689999999876432221 1123344555
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeec
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTK 245 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK 245 (308)
....++++++|+|++.+....+.++.+++. .++|+++|+||
T Consensus 76 ~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 76 QISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 556778899999988755555667777776 88999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.8e-17 Score=146.88 Aligned_cols=162 Identities=23% Similarity=0.287 Sum_probs=109.4
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEe--CCCEEEecCCCcccCCCchhhhhchHH
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRI--NDSWYLVDLPGYGYAAAPRELRTDWDK 196 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~ 196 (308)
.+.+.+.|+++|++|+|||||+|+|++...+. .+....|.+ ...+.+ +..+.+.||-|++.+- +..+-..|+
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~--~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~L-P~~LV~AFk- 263 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYV--ADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDL-PHPLVEAFK- 263 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeec--cccccccccCceeEEEeCCCceEEEecCccCcccC-ChHHHHHHH-
Confidence 45688999999999999999999999875332 222222222 122333 3479999999998633 233222333
Q ss_pred HHHHHHHhcCCccEEEEEEeCCCCCChhHH----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 197 FTKDYFLNRSTLVSVFLLIDASIPAKPIDL----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 197 ~~~~~~~~~~~~~~vl~viD~~~~~~~~~~----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
..+.+...+|++++|+|++++...... +++.-+.-..+|+|+|.||+|+.... . ....+..
T Consensus 264 ---sTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~--------~----~~~~~~~ 328 (411)
T COG2262 264 ---STLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDE--------E----ILAELER 328 (411)
T ss_pred ---HHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCch--------h----hhhhhhh
Confidence 334556677889999999998443332 23333334679999999999987532 1 1122221
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.. ...+++||++|+|++.|++.|.+.+..
T Consensus 329 ~~---~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 329 GS---PNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred cC---CCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 11 258999999999999999999998764
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.5e-17 Score=155.94 Aligned_cols=157 Identities=20% Similarity=0.240 Sum_probs=99.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcc-----------------------eec------cCCCCceEEEEEEEe--CC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKL-----------------------ALT------SKTPGKTQCINHFRI--ND 171 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~-----------------------~~~------~~~~~~t~~~~~~~~--~~ 171 (308)
+...+|+++|.+|+|||||+++|+..... +.+ ...+|+|.+.....+ ++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 44568999999999999999999853210 000 114678877644433 33
Q ss_pred -CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCC--CCChhHHHHHHHhccCCC-CEEEEeecCC
Q 021750 172 -SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASI--PAKPIDLEYASWLGQNQI-PMTLVFTKCD 247 (308)
Q Consensus 172 -~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~--~~~~~~~~l~~~~~~~~~-pvivV~NK~D 247 (308)
.+.+|||||+.+ +++.++.....+|++++|+|+++ +......+...++...+. |+++|+||+|
T Consensus 84 ~~i~liDtpG~~~-------------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~D 150 (425)
T PRK12317 84 YYFTIVDCPGHRD-------------FVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMD 150 (425)
T ss_pred eEEEEEECCCccc-------------chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccc
Confidence 799999999632 33333444556788999999987 554444444455554554 6899999999
Q ss_pred CCCcccCCCCCchhhHHHHHHHHHhhh-c-CCCCEEEeecCCCCCHHHHH
Q 021750 248 KRKKKKNGGKRPEENLNDFQELIQGFF-Q-TAPPWIMTSSVTNQGRDEIL 295 (308)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~vSA~~g~gi~el~ 295 (308)
+....+. ......+++.+.+.... . ...+++++||++|+|++++.
T Consensus 151 l~~~~~~---~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 151 AVNYDEK---RYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred cccccHH---HHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 9752110 01112233333332211 1 13679999999999998743
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-16 Score=138.07 Aligned_cols=151 Identities=24% Similarity=0.254 Sum_probs=98.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC-CEEEecCCCcccCCC-chhhhhchHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND-SWYLVDLPGYGYAAA-PRELRTDWDKFTKDYF 202 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~-~~~~~~~~~~~~~~~~ 202 (308)
+|+++|.+|+|||||+|+|++.. ..+...+++|.. ...+.+++ .+.+|||||+.+... ..+ +..+++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~--~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~-------~~~~~l 72 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK--SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKG-------RGRQVI 72 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchh-------HHHHHH
Confidence 79999999999999999999875 334556666643 33444555 789999999864321 111 222333
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-------------------------------------------HHHHHhc------
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-------------------------------------------EYASWLG------ 233 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-------------------------------------------~l~~~~~------ 233 (308)
.....++++++|+|+++.....+. .+...+.
T Consensus 73 ~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~ 152 (233)
T cd01896 73 AVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHN 152 (233)
T ss_pred HhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeee
Confidence 334455679999998764321110 0011110
Q ss_pred ---------------------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHH
Q 021750 234 ---------------------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRD 292 (308)
Q Consensus 234 ---------------------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~ 292 (308)
...+|+++|+||+|+... +..+.+ . ...+++++||++|.|++
T Consensus 153 ~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~---------~~~~~~----~----~~~~~~~~SA~~g~gi~ 215 (233)
T cd01896 153 ADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI---------EELDLL----A----RQPNSVVISAEKGLNLD 215 (233)
T ss_pred EEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCH---------HHHHHH----h----cCCCEEEEcCCCCCCHH
Confidence 134699999999998742 223322 1 12569999999999999
Q ss_pred HHHHHHHHHHH
Q 021750 293 EILLHMAQLRN 303 (308)
Q Consensus 293 el~~~i~~~~~ 303 (308)
++++.|.+.+.
T Consensus 216 ~l~~~i~~~L~ 226 (233)
T cd01896 216 ELKERIWDKLG 226 (233)
T ss_pred HHHHHHHHHhC
Confidence 99999988664
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=136.09 Aligned_cols=158 Identities=19% Similarity=0.204 Sum_probs=101.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-----C---CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-----D---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-----~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
||+++|.+|||||||++++++..+.....++.|.+.....+.++ + .+.+|||+|.. ++..+.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e----------~~~~l~ 71 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE----------SVKSTR 71 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch----------hHHHHH
Confidence 89999999999999999999987655444555544444444442 2 47899999953 556677
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-------------------------cCCCCEEEEeecCCCCCccc
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-------------------------QNQIPMTLVFTKCDKRKKKK 253 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-------------------------~~~~pvivV~NK~Dl~~~~~ 253 (308)
..||+.++ ++++|+|.++..++.+. ..|+. ..+.|+++|+||+|+.+.+.
T Consensus 72 ~~~yr~ad---~iIlVyDvtn~~Sf~~l--~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~ 146 (202)
T cd04102 72 AVFYNQVN---GIILVHDLTNRKSSQNL--QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKE 146 (202)
T ss_pred HHHhCcCC---EEEEEEECcChHHHHHH--HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcc
Confidence 77777654 48999999988776554 23321 13689999999999976543
Q ss_pred CCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCC-------CCHHHHHHHHHHHHHHH
Q 021750 254 NGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTN-------QGRDEILLHMAQLRNYW 305 (308)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g-------~gi~el~~~i~~~~~~~ 305 (308)
. ..+....-...+.+.+ +.+.++.++.+. .+-..|...+...++.+
T Consensus 147 ~----~~~~~~~~~~~ia~~~--~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (202)
T cd04102 147 S----SGNLVLTARGFVAEQG--NAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEKR 199 (202)
T ss_pred c----chHHHhhHhhhHHHhc--CCceEEEecCCcccccCCCccHHHHHHHHHHHHHhh
Confidence 2 1111111122222222 367888888754 24455555555555543
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.7e-17 Score=142.12 Aligned_cols=158 Identities=23% Similarity=0.222 Sum_probs=111.7
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC-CEEEecCCCcccCC-CchhhhhchH
Q 021750 120 CPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND-SWYLVDLPGYGYAA-APRELRTDWD 195 (308)
Q Consensus 120 ~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~-~~~~~~~~~~ 195 (308)
.++.|...|++||+|+||||||+|.|++.+ ..+...+.||.. ...+.+++ ++.++|+||+.++. .+.+.+
T Consensus 58 V~KsGda~v~lVGfPsvGKStLL~~LTnt~--seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG---- 131 (365)
T COG1163 58 VKKSGDATVALVGFPSVGKSTLLNKLTNTK--SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRG---- 131 (365)
T ss_pred EeccCCeEEEEEcCCCccHHHHHHHHhCCC--ccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCc----
Confidence 346677899999999999999999999976 456667766664 46677777 89999999998753 333312
Q ss_pred HHHHHHHHhcCCccEEEEEEeCCCCCChhHH-------------------------------------------HHHHHh
Q 021750 196 KFTKDYFLNRSTLVSVFLLIDASIPAKPIDL-------------------------------------------EYASWL 232 (308)
Q Consensus 196 ~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~-------------------------------------------~l~~~~ 232 (308)
++.+.....+|++++|+|+.......+. .+...+
T Consensus 132 ---~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL 208 (365)
T COG1163 132 ---RQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAIL 208 (365)
T ss_pred ---ceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHH
Confidence 2333455667889999999754321110 111111
Q ss_pred cc---------------------------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeec
Q 021750 233 GQ---------------------------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSS 285 (308)
Q Consensus 233 ~~---------------------------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA 285 (308)
.+ ..+|.++|+||+|+.+. +.++.+.+. ..++++||
T Consensus 209 ~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~---------e~~~~l~~~--------~~~v~isa 271 (365)
T COG1163 209 REYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL---------EELERLARK--------PNSVPISA 271 (365)
T ss_pred HHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH---------HHHHHHHhc--------cceEEEec
Confidence 10 46899999999999862 223333332 37999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 021750 286 VTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 286 ~~g~gi~el~~~i~~~~~ 303 (308)
..+.|+++|.+.|.+.+.
T Consensus 272 ~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 272 KKGINLDELKERIWDVLG 289 (365)
T ss_pred ccCCCHHHHHHHHHHhhC
Confidence 999999999999998765
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=151.02 Aligned_cols=160 Identities=21% Similarity=0.253 Sum_probs=101.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEEE----------------EEEe-------------CCCEE
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCIN----------------HFRI-------------NDSWY 174 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~~----------------~~~~-------------~~~~~ 174 (308)
..+|+++|.+++|||||+++|.+..... ......|.|.... .+.. ...+.
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 4589999999999999999997631100 0000112222111 0000 23689
Q ss_pred EecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-ChhHHHHHHHhccCC-CCEEEEeecCCCCCcc
Q 021750 175 LVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-KPIDLEYASWLGQNQ-IPMTLVFTKCDKRKKK 252 (308)
Q Consensus 175 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~-~~~~~~l~~~~~~~~-~pvivV~NK~Dl~~~~ 252 (308)
+|||||.. + +.+.++.....+|++++|+|++.+. ..+..+...++...+ +|+++|+||+|+.+..
T Consensus 84 liDtPGh~----------~---f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~ 150 (406)
T TIGR03680 84 FVDAPGHE----------T---LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKE 150 (406)
T ss_pred EEECCCHH----------H---HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHH
Confidence 99999953 2 4555666666678899999999765 333333344444443 5689999999997532
Q ss_pred cCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 253 KNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
. ..+..+++.+.+...+...++++++||++|+|+++++++|.+.+
T Consensus 151 ~-----~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 151 K-----ALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred H-----HHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 1 12223344443433222357899999999999999999998754
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-16 Score=132.97 Aligned_cols=166 Identities=15% Similarity=0.192 Sum_probs=106.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCch-hhhhchHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPR-ELRTDWDKFTKDYF 202 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~-~~~~~~~~~~~~~~ 202 (308)
+|+|+|.+|||||||+|+|++.+........++.|.... ...+++ ++.++||||+.+..... .+. ..+.+.+.
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~---~~i~~~~~ 78 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLS---KEIVRCLS 78 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHH---HHHHHHHH
Confidence 799999999999999999999763222222345555432 233444 79999999998643322 211 12333344
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCCchhhH----HHHHHHHHhh
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKRPEENL----NDFQELIQGF 273 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~ 273 (308)
....+.+++++|+|+.. .+..+..+.+++.. .-.++++|+|++|...... .++.+ ..++..+...
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~-----~~~~~~~~~~~l~~l~~~c 152 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGT-----LEDYLENSCEALKRLLEKC 152 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCc-----HHHHHHhccHHHHHHHHHh
Confidence 44567788999999987 67666666666643 2368999999999875432 11111 2233333321
Q ss_pred hcCCCCEEEee-----cCCCCCHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTS-----SVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 274 ~~~~~~~~~vS-----A~~g~gi~el~~~i~~~~~~ 304 (308)
...++..+ +..+.++++|++.|.+++.+
T Consensus 153 ---~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 153 ---GGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred ---CCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 12344443 56688999999999999886
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-16 Score=147.63 Aligned_cols=161 Identities=17% Similarity=0.221 Sum_probs=110.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcc---------e-----eccCCCCceEEEEEEEe--CC-CEEEecCCCcccCCC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKL---------A-----LTSKTPGKTQCINHFRI--ND-SWYLVDLPGYGYAAA 186 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~---------~-----~~~~~~~~t~~~~~~~~--~~-~~~liDtpG~~~~~~ 186 (308)
...+|+++|..++|||||+++|++.... . ......|+|.+.....+ ++ ++.++||||+.
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~---- 86 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA---- 86 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH----
Confidence 3468999999999999999999873100 0 01124577776654444 22 68999999953
Q ss_pred chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhH-H
Q 021750 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENL-N 264 (308)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~-~ 264 (308)
++...++.....+|++++|+|+..+...+..++..++...++| +|+|+||+|+.+..+ ..+.+ +
T Consensus 87 ---------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~-----~~~~i~~ 152 (394)
T PRK12736 87 ---------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEE-----LLELVEM 152 (394)
T ss_pred ---------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHH-----HHHHHHH
Confidence 2566666777778899999999988777777777888778898 678899999974321 11111 2
Q ss_pred HHHHHHHhhh--cCCCCEEEeecCCCC--------CHHHHHHHHHHHH
Q 021750 265 DFQELIQGFF--QTAPPWIMTSSVTNQ--------GRDEILLHMAQLR 302 (308)
Q Consensus 265 ~~~~~~~~~~--~~~~~~~~vSA~~g~--------gi~el~~~i~~~~ 302 (308)
++.+.+.... ....+++++||++|. ++.++++.+.+.+
T Consensus 153 ~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 153 EVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred HHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 3333333221 123689999999983 5677777776654
|
|
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.8e-17 Score=132.52 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=119.9
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
.....+|+++|-.|+||||++++|-..+. ++..|.....+..+.+.+ ++.+||..|.. +++.+|++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~---vttvPTiGfnVE~v~ykn~~f~vWDvGGq~----------k~R~lW~~ 80 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEI---VTTVPTIGFNVETVEYKNISFTVWDVGGQE----------KLRPLWKH 80 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCc---ccCCCccccceeEEEEcceEEEEEecCCCc----------ccccchhh
Confidence 34456999999999999999999988753 344777777777777776 89999999953 67779999
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhH--HHHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH--hh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPID--LEYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ--GF 273 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~--~~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~ 273 (308)
||.+.++ +|||+|+++.....+ .++...+.. ...|+++.+||.|+..... ..++.+.++ ..
T Consensus 81 Y~~~t~~---lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als---------~~ei~~~L~l~~l 148 (181)
T KOG0070|consen 81 YFQNTQG---LIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS---------AAEITNKLGLHSL 148 (181)
T ss_pred hccCCcE---EEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC---------HHHHHhHhhhhcc
Confidence 9988876 899999998765433 355555553 4799999999999997653 233333332 11
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
-.....+..|+|.+|+|+.|.++|+.+.+..
T Consensus 149 ~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 149 RSRNWHIQSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred CCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence 2234678889999999999999999988765
|
|
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=139.19 Aligned_cols=148 Identities=18% Similarity=0.199 Sum_probs=91.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcc----e-------------------------eccCCCCceEEEE--EEEeCC-CEE
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKL----A-------------------------LTSKTPGKTQCIN--HFRIND-SWY 174 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~----~-------------------------~~~~~~~~t~~~~--~~~~~~-~~~ 174 (308)
+|+++|.+++|||||+.+|+..... . ......|+|++.. .+.+++ .+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999999742100 0 0011335666543 333444 799
Q ss_pred EecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCC-------CChhHHHHHHHhccCC-CCEEEEeecC
Q 021750 175 LVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIP-------AKPIDLEYASWLGQNQ-IPMTLVFTKC 246 (308)
Q Consensus 175 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~-------~~~~~~~l~~~~~~~~-~pvivV~NK~ 246 (308)
+|||||+.. +...++.....++++++|+|++.+ ...+..+...+....+ +|+++|+||+
T Consensus 81 liDtpG~~~-------------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~ 147 (219)
T cd01883 81 ILDAPGHRD-------------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKM 147 (219)
T ss_pred EEECCChHH-------------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcc
Confidence 999999531 445555555667889999999874 2222233333333344 6899999999
Q ss_pred CCCCcccCCCCCchhhHHHHHHH----HHhhh--cCCCCEEEeecCCCCCHH
Q 021750 247 DKRKKKKNGGKRPEENLNDFQEL----IQGFF--QTAPPWIMTSSVTNQGRD 292 (308)
Q Consensus 247 Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~vSA~~g~gi~ 292 (308)
|+..... .....+++.+. +.... ...++++++||++|+|++
T Consensus 148 Dl~~~~~-----~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 148 DDVTVNW-----SEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccccc-----cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 9984210 11222333333 32211 113789999999999986
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-16 Score=149.24 Aligned_cols=160 Identities=19% Similarity=0.234 Sum_probs=105.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCccee--ccCCCCceEEEEE----------------EEe-------------CCC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLAL--TSKTPGKTQCINH----------------FRI-------------NDS 172 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~--~~~~~~~t~~~~~----------------~~~-------------~~~ 172 (308)
...+|+++|..++|||||+.+|.+.. ... .....|.|..... +.. ...
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~-~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVW-TDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCee-cccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 34689999999999999999997631 100 1112233333210 100 136
Q ss_pred EEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-ChhHHHHHHHhccCC-CCEEEEeecCCCCC
Q 021750 173 WYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-KPIDLEYASWLGQNQ-IPMTLVFTKCDKRK 250 (308)
Q Consensus 173 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~-~~~~~~l~~~~~~~~-~pvivV~NK~Dl~~ 250 (308)
+.+|||||.. .+...++..+..+|++++|+|++.+. .....+...++...+ .|+++|+||+|+.+
T Consensus 87 i~liDtPG~~-------------~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 87 VSFVDAPGHE-------------TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVS 153 (411)
T ss_pred EEEEECCCHH-------------HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecccc
Confidence 8999999942 26677788877788899999999765 444444444444444 46899999999975
Q ss_pred cccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 251 KKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
... ..+..+++.+.+........+++++||++|+|+++|+++|.+.+
T Consensus 154 ~~~-----~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 154 KER-----ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred chh-----HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 321 12223344443332222347899999999999999999998764
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-16 Score=148.75 Aligned_cols=151 Identities=17% Similarity=0.221 Sum_probs=102.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCc------ce--------eccCCCCceEEEEEEEe--CC-CEEEecCCCcccCC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKK------LA--------LTSKTPGKTQCINHFRI--ND-SWYLVDLPGYGYAA 185 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~------~~--------~~~~~~~~t~~~~~~~~--~~-~~~liDtpG~~~~~ 185 (308)
....+|+++|.+++|||||+++|++... .. ......|+|.+.....+ ++ ++.++||||+.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~--- 86 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA--- 86 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH---
Confidence 3446899999999999999999997411 00 01123577776543333 33 68999999953
Q ss_pred CchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhHH
Q 021750 186 APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENLN 264 (308)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~~ 264 (308)
.+.+..+.....+|++++|+|+..+...+..++..++...++| +|+++||+|+.+..+ ..+...+
T Consensus 87 ----------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~----~~~~~~~ 152 (409)
T CHL00071 87 ----------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEE----LLELVEL 152 (409)
T ss_pred ----------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHH----HHHHHHH
Confidence 1455555666677889999999988887777778887778899 778999999975322 0111112
Q ss_pred HHHHHHHhhh--cCCCCEEEeecCCCCC
Q 021750 265 DFQELIQGFF--QTAPPWIMTSSVTNQG 290 (308)
Q Consensus 265 ~~~~~~~~~~--~~~~~~~~vSA~~g~g 290 (308)
++.+.+.... ....+++++||.+|+|
T Consensus 153 ~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 153 EVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 3444443321 1237899999999974
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-16 Score=152.56 Aligned_cols=159 Identities=20% Similarity=0.252 Sum_probs=104.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCc-------ceecc------CCCCceEEEE--EEEe---C---CCEEEecCCCc
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKK-------LALTS------KTPGKTQCIN--HFRI---N---DSWYLVDLPGY 181 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~-------~~~~~------~~~~~t~~~~--~~~~---~---~~~~liDtpG~ 181 (308)
..+.+|+++|..++|||||+.+|+.... ...+. ...|.|.... .+.+ + ..+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 3466999999999999999999986311 00111 1234444321 2222 2 25899999997
Q ss_pred ccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchh
Q 021750 182 GYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEE 261 (308)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~ 261 (308)
. .|...+..++..+ |++++|+|++.+...+......+....++|+++|+||+|+.... ...
T Consensus 85 ~----------dF~~~v~~sl~~a---D~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~------~~~ 145 (600)
T PRK05433 85 V----------DFSYEVSRSLAAC---EGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAAD------PER 145 (600)
T ss_pred H----------HHHHHHHHHHHHC---CEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCccc------HHH
Confidence 5 3444555555544 55899999998877666544444555689999999999986432 122
Q ss_pred hHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 262 NLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++.+.++. ....++++||++|.|+++++++|.+.+.
T Consensus 146 v~~ei~~~lg~---~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 146 VKQEIEDVIGI---DASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred HHHHHHHHhCC---CcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 23333333220 1135899999999999999999987653
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.2e-16 Score=124.33 Aligned_cols=147 Identities=20% Similarity=0.232 Sum_probs=91.9
Q ss_pred EEcCCCCCHHHHHHHHhcCCc-ceeccCCCCceEEEEEEEe---CCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 130 LVGRSNVGKSSLLNSLVRRKK-LALTSKTPGKTQCINHFRI---NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 130 lvG~~~vGKSSLin~l~~~~~-~~~~~~~~~~t~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
++|.+|+|||||++++++... ......+. .......+.. +..+.+||+||... +......++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~--- 66 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQER----------FRSLRRLYY--- 66 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHH----------HHhHHHHHh---
Confidence 589999999999999998753 11111111 2222222332 23689999999653 111222332
Q ss_pred CCccEEEEEEeCCCCCChhHHHH-----HHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCE
Q 021750 206 STLVSVFLLIDASIPAKPIDLEY-----ASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW 280 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~~l-----~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (308)
...+++++|+|.+.+........ .......++|+++|+||+|+..... ..... ...... .....++
T Consensus 67 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~------~~~~~-~~~~~~--~~~~~~~ 137 (157)
T cd00882 67 RGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERV------VSEEE-LAEQLA--KELGVPY 137 (157)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccc------hHHHH-HHHHHH--hhcCCcE
Confidence 34456999999998765544321 2233457899999999999876432 11110 011111 1124899
Q ss_pred EEeecCCCCCHHHHHHHHH
Q 021750 281 IMTSSVTNQGRDEILLHMA 299 (308)
Q Consensus 281 ~~vSA~~g~gi~el~~~i~ 299 (308)
+++|+.++.|+++++++|.
T Consensus 138 ~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 138 FETSAKTGENVEELFEELA 156 (157)
T ss_pred EEEecCCCCChHHHHHHHh
Confidence 9999999999999999975
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=125.31 Aligned_cols=157 Identities=20% Similarity=0.179 Sum_probs=112.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHh
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 204 (308)
..+.++|..++|||||+|.+..+++.....++. ...+..+.-+. .+.+||.||.. +|+.+|..|++.
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~edmiptv--Gfnmrk~tkgnvtiklwD~gGq~----------rfrsmWerycR~ 88 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLEDMIPTV--GFNMRKVTKGNVTIKLWDLGGQP----------RFRSMWERYCRG 88 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchhhhcccc--cceeEEeccCceEEEEEecCCCc----------cHHHHHHHHhhc
Confidence 479999999999999999998866533333333 33333333333 68899999964 678899888876
Q ss_pred cCCccEEEEEEeCCCCCCh--hHHHHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH--hhhcCC
Q 021750 205 RSTLVSVFLLIDASIPAKP--IDLEYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ--GFFQTA 277 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~--~~~~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 277 (308)
.+. ++|++|++++... ...++..++.. .++|+++++||.|+.+.-. -..+.+.++ ......
T Consensus 89 v~a---ivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~---------~~~li~rmgL~sitdRE 156 (186)
T KOG0075|consen 89 VSA---IVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS---------KIALIERMGLSSITDRE 156 (186)
T ss_pred CcE---EEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc---------HHHHHHHhCccccccce
Confidence 654 8999999986543 33455555543 6899999999999987543 223333332 222344
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
+.+|.+||++..|++-+.+||.+.-+..+
T Consensus 157 vcC~siScke~~Nid~~~~Wli~hsk~~~ 185 (186)
T KOG0075|consen 157 VCCFSISCKEKVNIDITLDWLIEHSKSLR 185 (186)
T ss_pred EEEEEEEEcCCccHHHHHHHHHHHhhhhc
Confidence 78999999999999999999999876543
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.8e-16 Score=145.65 Aligned_cols=161 Identities=18% Similarity=0.246 Sum_probs=108.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC------Ccce--------eccCCCCceEEEEEEEe--CC-CEEEecCCCcccCCC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRR------KKLA--------LTSKTPGKTQCINHFRI--ND-SWYLVDLPGYGYAAA 186 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~------~~~~--------~~~~~~~~t~~~~~~~~--~~-~~~liDtpG~~~~~~ 186 (308)
...+|+++|.+++|||||+++|++. .... ......|+|.+.....+ ++ ++.++||||+.
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~---- 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA---- 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH----
Confidence 3458999999999999999999962 1100 01124567766544444 33 68999999963
Q ss_pred chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEE-EEeecCCCCCcccCCCCCchhhH-H
Q 021750 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMT-LVFTKCDKRKKKKNGGKRPEENL-N 264 (308)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvi-vV~NK~Dl~~~~~~~~~~~~~~~-~ 264 (308)
.+..........+|++++|+|+..+...+..++..++...++|.+ +++||+|+.+..+ ..+.+ +
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~-----~~~~~~~ 152 (396)
T PRK12735 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEE-----LLELVEM 152 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHH-----HHHHHHH
Confidence 255666666777889999999998776666666777777788966 5799999974221 11112 2
Q ss_pred HHHHHHHhhhc--CCCCEEEeecCCCC----------CHHHHHHHHHHHH
Q 021750 265 DFQELIQGFFQ--TAPPWIMTSSVTNQ----------GRDEILLHMAQLR 302 (308)
Q Consensus 265 ~~~~~~~~~~~--~~~~~~~vSA~~g~----------gi~el~~~i~~~~ 302 (308)
++.+.+..... ...+++++||++|. ++.+|++.|.+.+
T Consensus 153 ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 153 EVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 33333432211 23789999999984 6778888877653
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-15 Score=131.96 Aligned_cols=111 Identities=20% Similarity=0.244 Sum_probs=77.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcc----ee------cc------CCCCceEE--EEEEEeCC-CEEEecCCCcccCCCc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKL----AL------TS------KTPGKTQC--INHFRIND-SWYLVDLPGYGYAAAP 187 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~----~~------~~------~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~~ 187 (308)
+|+++|.+|+|||||+++|+..... .. .. ...+.+.. ...+.+++ ++.+|||||+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~----- 75 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHM----- 75 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCcc-----
Confidence 4899999999999999999874210 00 00 11122332 23344444 79999999975
Q ss_pred hhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
+|...+..++... |++++|+|++.+.......+..++...++|+++++||+|+..
T Consensus 76 -----~f~~~~~~~l~~a---D~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~ 130 (237)
T cd04168 76 -----DFIAEVERSLSVL---DGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAG 130 (237)
T ss_pred -----chHHHHHHHHHHh---CeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 2333444555544 458999999988776666667777778999999999999875
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-17 Score=126.71 Aligned_cols=152 Identities=23% Similarity=0.305 Sum_probs=113.8
Q ss_pred EEEcCCCCCHHHHHHHHhcCCccee-ccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHHh
Q 021750 129 ALVGRSNVGKSSLLNSLVRRKKLAL-TSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 129 ~lvG~~~vGKSSLin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 204 (308)
.++|.+++|||+|+-++-.+.+.+. .-.+.|.......+..++ ++.+|||.| ++ +|++....||+.
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtag-------qe---rfrsvt~ayyrd 70 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAG-------QE---RFRSVTHAYYRD 70 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccc-------hH---HHhhhhHhhhcc
Confidence 3789999999999888766543221 111234444344455554 688999999 44 788899899987
Q ss_pred cCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 205 RSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
++. +++++|..+..++.+. ..|+. ...+.+++++||||+..++. +..++.+.+.+.++ .
T Consensus 71 a~a---llllydiankasfdn~--~~wlsei~ey~k~~v~l~llgnk~d~a~er~----v~~ddg~kla~~y~------i 135 (192)
T KOG0083|consen 71 ADA---LLLLYDIANKASFDNC--QAWLSEIHEYAKEAVALMLLGNKCDLAHERA----VKRDDGEKLAEAYG------I 135 (192)
T ss_pred cce---eeeeeecccchhHHHH--HHHHHHHHHHHHhhHhHhhhccccccchhhc----cccchHHHHHHHHC------C
Confidence 765 8999999988887764 23332 24677899999999977554 46777888888876 8
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
|++++||++|.|++-.|-.|.+.+.+.
T Consensus 136 pfmetsaktg~nvd~af~~ia~~l~k~ 162 (192)
T KOG0083|consen 136 PFMETSAKTGFNVDLAFLAIAEELKKL 162 (192)
T ss_pred CceeccccccccHhHHHHHHHHHHHHh
Confidence 999999999999999999999887664
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-15 Score=146.44 Aligned_cols=164 Identities=21% Similarity=0.305 Sum_probs=100.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCC-ceEEEEE--EEe-----------C--------CCEEEecCCCc
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPG-KTQCINH--FRI-----------N--------DSWYLVDLPGY 181 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~-~t~~~~~--~~~-----------~--------~~~~liDtpG~ 181 (308)
..|.|+++|.+|+|||||+++|.+... ....+| .|..... ... . ..+.+|||||+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v---~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAV---AAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc---ccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 345899999999999999999987531 222221 2221110 000 0 13789999996
Q ss_pred ccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCC----
Q 021750 182 GYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGK---- 257 (308)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~---- 257 (308)
. .|..++..+ ...+|++++|+|++++...+..+...++...++|+++++||+|+.........
T Consensus 82 e----------~f~~~~~~~---~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~ 148 (586)
T PRK04004 82 E----------AFTNLRKRG---GALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFL 148 (586)
T ss_pred H----------HHHHHHHHh---HhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHH
Confidence 4 333344333 34456799999999876666655566666678999999999998631100000
Q ss_pred --------Cchh----hHHHHHHHHHh------------hhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 258 --------RPEE----NLNDFQELIQG------------FFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 258 --------~~~~----~~~~~~~~~~~------------~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
...+ .+.++...+.. .+....+++++||++|+|++++++.+.....
T Consensus 149 e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~ 218 (586)
T PRK04004 149 ESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQ 218 (586)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHH
Confidence 0000 11111112211 1123478999999999999999998875443
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-15 Score=143.05 Aligned_cols=162 Identities=19% Similarity=0.251 Sum_probs=108.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC------Cc-ce-------eccCCCCceEEEEEEEe--CC-CEEEecCCCcccCC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRR------KK-LA-------LTSKTPGKTQCINHFRI--ND-SWYLVDLPGYGYAA 185 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~------~~-~~-------~~~~~~~~t~~~~~~~~--~~-~~~liDtpG~~~~~ 185 (308)
....+|+++|..++|||||+++|.+. .. .. ......|+|.+.....+ ++ ++.++||||+..
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~-- 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD-- 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc--
Confidence 34468999999999999999999732 10 00 01223677877655444 23 789999999742
Q ss_pred CchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCE-EEEeecCCCCCcccCCCCCchhhHH
Q 021750 186 APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPM-TLVFTKCDKRKKKKNGGKRPEENLN 264 (308)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pv-ivV~NK~Dl~~~~~~~~~~~~~~~~ 264 (308)
++.........+|++++|+|+..+...++.++..++...++|. |+++||+|+.+..+ ..+.++
T Consensus 137 -----------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~-----~~~~i~ 200 (447)
T PLN03127 137 -----------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEE-----LLELVE 200 (447)
T ss_pred -----------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHH-----HHHHHH
Confidence 4444444555678899999999888777778888888888994 78899999975321 112222
Q ss_pred -HHHHHHHhh-h-cCCCCEEEeecC---CCCC-------HHHHHHHHHHHH
Q 021750 265 -DFQELIQGF-F-QTAPPWIMTSSV---TNQG-------RDEILLHMAQLR 302 (308)
Q Consensus 265 -~~~~~~~~~-~-~~~~~~~~vSA~---~g~g-------i~el~~~i~~~~ 302 (308)
++.+.+... + ....+++++||. +|.| +.+|++++.+.+
T Consensus 201 ~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 201 MELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred HHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 333333221 1 124789999886 4555 677888877654
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-15 Score=141.83 Aligned_cols=161 Identities=19% Similarity=0.255 Sum_probs=109.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCc-------c--e-----eccCCCCceEEEEEEEe--CC-CEEEecCCCcccCCC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKK-------L--A-----LTSKTPGKTQCINHFRI--ND-SWYLVDLPGYGYAAA 186 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~-------~--~-----~~~~~~~~t~~~~~~~~--~~-~~~liDtpG~~~~~~ 186 (308)
...+|+++|..++|||||+++|++... . . ......|+|.+.....+ ++ ++.++||||+.
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~---- 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA---- 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH----
Confidence 345899999999999999999997310 0 0 01124577776654444 23 69999999963
Q ss_pred chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEE-EEeecCCCCCcccCCCCCchhhHHH
Q 021750 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMT-LVFTKCDKRKKKKNGGKRPEENLND 265 (308)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvi-vV~NK~Dl~~~~~~~~~~~~~~~~~ 265 (308)
++..........+|++++|+|+..+...+..++..++...++|++ +++||+|+.+..+ ..+...++
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~----~~~~~~~~ 153 (396)
T PRK00049 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEE----LLELVEME 153 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHH----HHHHHHHH
Confidence 255555566677889999999998877777777888887889976 5899999975221 01111123
Q ss_pred HHHHHHhh-h-cCCCCEEEeecCCCC----------CHHHHHHHHHHH
Q 021750 266 FQELIQGF-F-QTAPPWIMTSSVTNQ----------GRDEILLHMAQL 301 (308)
Q Consensus 266 ~~~~~~~~-~-~~~~~~~~vSA~~g~----------gi~el~~~i~~~ 301 (308)
+.+.+... + ....+++++||++|. ++..+++.|.+.
T Consensus 154 i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 154 VRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred HHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 33333321 1 134799999999875 466777777654
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-15 Score=143.60 Aligned_cols=150 Identities=19% Similarity=0.256 Sum_probs=101.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC------Ccc---e-----eccCCCCceEEEEEEEeC--C-CEEEecCCCcccCC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRR------KKL---A-----LTSKTPGKTQCINHFRIN--D-SWYLVDLPGYGYAA 185 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~------~~~---~-----~~~~~~~~t~~~~~~~~~--~-~~~liDtpG~~~~~ 185 (308)
....+|+++|..++|||||+++|++. ... . ......|+|.+.....+. + ++.+|||||+.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~--- 86 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA--- 86 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH---
Confidence 34468999999999999999999842 100 0 011235777766555442 2 69999999963
Q ss_pred CchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEE-EEeecCCCCCcccCCCCCchhhHH
Q 021750 186 APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMT-LVFTKCDKRKKKKNGGKRPEENLN 264 (308)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvi-vV~NK~Dl~~~~~~~~~~~~~~~~ 264 (308)
++...++.....+|++++|+|+..+...+..+...++...++|.+ +|+||+|+.+..+ ..+...+
T Consensus 87 ----------~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~----~~~~~~~ 152 (394)
T TIGR00485 87 ----------DYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEE----LLELVEM 152 (394)
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHH----HHHHHHH
Confidence 255666777777888999999998777777677777777788866 6899999975321 0111112
Q ss_pred HHHHHHHhhhc--CCCCEEEeecCCCC
Q 021750 265 DFQELIQGFFQ--TAPPWIMTSSVTNQ 289 (308)
Q Consensus 265 ~~~~~~~~~~~--~~~~~~~vSA~~g~ 289 (308)
++.+.+..... ..++++++||++|.
T Consensus 153 ~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 153 EVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHHhcCCCccCccEEECcccccc
Confidence 34444433211 22789999999885
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-15 Score=146.57 Aligned_cols=160 Identities=19% Similarity=0.218 Sum_probs=109.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCC--ccee------------ccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRK--KLAL------------TSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAA 186 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~--~~~~------------~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~ 186 (308)
.+.+|+++|..++|||||+++|+... +... .....|.|.... .+.+++ .+.+|||||..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~---- 79 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHA---- 79 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcc----
Confidence 45699999999999999999999731 1110 012345555433 333444 79999999965
Q ss_pred chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHH
Q 021750 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDF 266 (308)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~ 266 (308)
.|...+..++.. +|++++|+|+..+...+......++...++|.++|+||+|+.... ..+.++++
T Consensus 80 ------df~~~v~~~l~~---aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~------~~~vl~ei 144 (607)
T PRK10218 80 ------DFGGEVERVMSM---VDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGAR------PDWVVDQV 144 (607)
T ss_pred ------hhHHHHHHHHHh---CCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCc------hhHHHHHH
Confidence 333345555544 455899999998776666666666667889999999999987543 33445555
Q ss_pred HHHHHhh----hcCCCCEEEeecCCCC----------CHHHHHHHHHHHH
Q 021750 267 QELIQGF----FQTAPPWIMTSSVTNQ----------GRDEILLHMAQLR 302 (308)
Q Consensus 267 ~~~~~~~----~~~~~~~~~vSA~~g~----------gi~el~~~i~~~~ 302 (308)
.+.+... ....+|++++||++|. |+..+++.|.+.+
T Consensus 145 ~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 145 FDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred HHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 5554321 0124789999999998 5788888777654
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-15 Score=147.58 Aligned_cols=158 Identities=20% Similarity=0.245 Sum_probs=107.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCC--cce--ec----------cCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCch
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRK--KLA--LT----------SKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPR 188 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~--~~~--~~----------~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~ 188 (308)
.+|+++|..++|||||+++|+... +.. .+ ....|.|... ..+.+++ ++.+|||||+.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~------ 75 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHA------ 75 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHH------
Confidence 489999999999999999998631 100 00 1123455543 3445555 79999999964
Q ss_pred hhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHH
Q 021750 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQE 268 (308)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 268 (308)
.|...+..++. .+|++++|+|+..+...+...+..++...++|+++|+||+|+...+ ..+..+++.+
T Consensus 76 ----DF~~ev~~~l~---~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~------~~~v~~ei~~ 142 (594)
T TIGR01394 76 ----DFGGEVERVLG---MVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSAR------PDEVVDEVFD 142 (594)
T ss_pred ----HHHHHHHHHHH---hCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcC------HHHHHHHHHH
Confidence 23333344444 4466999999998776666666777777889999999999987532 2233444444
Q ss_pred HHHhhh----cCCCCEEEeecCCCC----------CHHHHHHHHHHHH
Q 021750 269 LIQGFF----QTAPPWIMTSSVTNQ----------GRDEILLHMAQLR 302 (308)
Q Consensus 269 ~~~~~~----~~~~~~~~vSA~~g~----------gi~el~~~i~~~~ 302 (308)
.+.... ...+|++++||++|. |++.+|+.|.+.+
T Consensus 143 l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 143 LFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred HHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 443211 113689999999996 7999999888764
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.4e-17 Score=130.30 Aligned_cols=158 Identities=18% Similarity=0.210 Sum_probs=120.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..+|++++|..+|||||+|.++|.+-|...+..+.|+......+.+.. +..+|||+|. + +|..+.+.
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagq-------e---EfDaItkA 88 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQ-------E---EFDAITKA 88 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccc-------h---hHHHHHHH
Confidence 346999999999999999999998765444555666554433333332 5778999884 3 67779999
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
||+.+.. .++|+..++..++... ..|.. -..+|.++|-||+|+.+... .....++.+.+.+.
T Consensus 89 yyrgaqa---~vLVFSTTDr~SFea~--~~w~~kv~~e~~~IPtV~vqNKIDlveds~----~~~~evE~lak~l~---- 155 (246)
T KOG4252|consen 89 YYRGAQA---SVLVFSTTDRYSFEAT--LEWYNKVQKETERIPTVFVQNKIDLVEDSQ----MDKGEVEGLAKKLH---- 155 (246)
T ss_pred Hhccccc---eEEEEecccHHHHHHH--HHHHHHHHHHhccCCeEEeeccchhhHhhh----cchHHHHHHHHHhh----
Confidence 9998887 6888888877666543 44443 26899999999999997654 35566777777776
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
..++.+|++...|+..+|.++.+.+.+..
T Consensus 156 --~RlyRtSvked~NV~~vF~YLaeK~~q~~ 184 (246)
T KOG4252|consen 156 --KRLYRTSVKEDFNVMHVFAYLAEKLTQQK 184 (246)
T ss_pred --hhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 67899999999999999999998776654
|
|
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=118.30 Aligned_cols=156 Identities=13% Similarity=0.159 Sum_probs=117.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
..+|+.+|..++||||++..|.-++ ..+..|.+.+.+..+.+.+ .+.+||..|.. +++.+|++||.
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~---~~~~ipTvGFnvetVtykN~kfNvwdvGGqd----------~iRplWrhYy~ 83 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQ---SVTTIPTVGFNVETVTYKNVKFNVWDVGGQD----------KIRPLWRHYYT 83 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCC---CcccccccceeEEEEEeeeeEEeeeeccCch----------hhhHHHHhhcc
Confidence 4589999999999999999998874 3455666677777777766 89999999953 67789999998
Q ss_pred hcCCccEEEEEEeCCCCCChh--HHHHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 204 NRSTLVSVFLLIDASIPAKPI--DLEYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~--~~~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
...+ ++||+|+.+..... ..++...+.. ...+++|..||-|+++... ..+++.+.+.-. .-+...
T Consensus 84 gtqg---lIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~------pqei~d~leLe~-~r~~~W 153 (180)
T KOG0071|consen 84 GTQG---LIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK------PQEIQDKLELER-IRDRNW 153 (180)
T ss_pred CCce---EEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC------HHHHHHHhcccc-ccCCcc
Confidence 7776 89999998764332 3355555553 5789999999999998764 222333322221 222346
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.+.+++|.+|+|+.|-+.|+.+..+
T Consensus 154 ~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 154 YVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred EeeccccccchhHHHHHHHHHhhcc
Confidence 7889999999999999999987654
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=144.14 Aligned_cols=155 Identities=19% Similarity=0.230 Sum_probs=95.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCc-ce----------------------e------ccCCCCceEEEEEEEe--CC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKK-LA----------------------L------TSKTPGKTQCINHFRI--ND 171 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~-~~----------------------~------~~~~~~~t~~~~~~~~--~~ 171 (308)
....+|+++|..++|||||+++|+.... +. . .....|.|.+.....+ ++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 4456899999999999999999986210 00 0 0113366666543333 33
Q ss_pred -CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC---ChhHHHHHHHhccCC-CCEEEEeecC
Q 021750 172 -SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA---KPIDLEYASWLGQNQ-IPMTLVFTKC 246 (308)
Q Consensus 172 -~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~---~~~~~~l~~~~~~~~-~pvivV~NK~ 246 (308)
.+.+|||||.. + +++.++.....+|++++|+|++.+. .....+...+....+ .|+++|+||+
T Consensus 85 ~~i~iiDtpGh~----------~---f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~ 151 (426)
T TIGR00483 85 YEVTIVDCPGHR----------D---FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKM 151 (426)
T ss_pred eEEEEEECCCHH----------H---HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEECh
Confidence 79999999953 1 4555555556678899999999873 222222222333333 5789999999
Q ss_pred CCCCcccCCCCCchhhHHHHHHHHHhhh--cCCCCEEEeecCCCCCHHH
Q 021750 247 DKRKKKKNGGKRPEENLNDFQELIQGFF--QTAPPWIMTSSVTNQGRDE 293 (308)
Q Consensus 247 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vSA~~g~gi~e 293 (308)
|+.+..+.. ..+..+++.+.+.... ....+++++||++|+|+++
T Consensus 152 Dl~~~~~~~---~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 152 DSVNYDEEE---FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred hccCccHHH---HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 997422100 1111223333332211 1236899999999999986
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-15 Score=130.71 Aligned_cols=177 Identities=20% Similarity=0.224 Sum_probs=116.1
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCc----eEEEEEEEeCCCEEEecCCCcccCCCchhhhhch
Q 021750 119 DCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGK----TQCINHFRINDSWYLVDLPGYGYAAAPRELRTDW 194 (308)
Q Consensus 119 ~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~----t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~ 194 (308)
+..+....+|.++|.+|+|||||||+|+..+. ..++..+-+ ++....+. ...+++|||||++++..... ++
T Consensus 33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~-~~v~~vg~~t~~~~~~~~~~~-~~~l~lwDtPG~gdg~~~D~---~~ 107 (296)
T COG3596 33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEV-KEVSKVGVGTDITTRLRLSYD-GENLVLWDTPGLGDGKDKDA---EH 107 (296)
T ss_pred hhcccCceeEEEecCCCCcHHHHHHHHHhccC-ceeeecccCCCchhhHHhhcc-ccceEEecCCCcccchhhhH---HH
Confidence 33455556888999999999999999997543 233333322 22222222 24799999999987543332 34
Q ss_pred HHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHh-c-cCCCCEEEEeecCCCCCccc----C---CCCCchhhHHH
Q 021750 195 DKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWL-G-QNQIPMTLVFTKCDKRKKKK----N---GGKRPEENLND 265 (308)
Q Consensus 195 ~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~-~-~~~~pvivV~NK~Dl~~~~~----~---~~~~~~~~~~~ 265 (308)
+...++++... |++++++|+.++.-..+..+.+.+ . ..++++++++|.+|...... . ......+.+++
T Consensus 108 r~~~~d~l~~~---DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~ 184 (296)
T COG3596 108 RQLYRDYLPKL---DLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE 184 (296)
T ss_pred HHHHHHHhhhc---cEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHH
Confidence 44555555444 468999999887554444333332 2 24599999999999876521 0 01112344455
Q ss_pred HHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 266 FQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 266 ~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
-.+.+.+++....|++.+|.+.++|++++..++.+.+-
T Consensus 185 k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 185 KAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 55556666666789999999999999999999988653
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-15 Score=142.05 Aligned_cols=152 Identities=19% Similarity=0.185 Sum_probs=94.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcc-ee------------------------c------cCCCCceEEEE--EEEeCC-
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKL-AL------------------------T------SKTPGKTQCIN--HFRIND- 171 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~-~~------------------------~------~~~~~~t~~~~--~~~~~~- 171 (308)
.+|+++|..++|||||+++|+..... .. + ....|.|.+.. .+..++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 37999999999999999999753210 00 0 00123444432 333333
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCC-CEEEEeecCCCCC
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQI-PMTLVFTKCDKRK 250 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~-pvivV~NK~Dl~~ 250 (308)
++.++||||+. + +.+........+|++++|+|+..+...+..+...++...+. ++++|+||+|+..
T Consensus 81 ~~~liDtPGh~----------~---f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 81 KFIVADTPGHE----------Q---YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVD 147 (406)
T ss_pred EEEEEeCCCHH----------H---HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccccc
Confidence 79999999953 2 44444455567788999999998876665554555544344 5889999999975
Q ss_pred cccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHH
Q 021750 251 KKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDE 293 (308)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~e 293 (308)
.... ...+..+++.+.+........+++++||++|+|+++
T Consensus 148 ~~~~---~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 148 YDEE---VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred chHH---HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 3210 011112222222222111246899999999999986
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.1e-15 Score=141.51 Aligned_cols=152 Identities=18% Similarity=0.241 Sum_probs=102.1
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCc------ce--------eccCCCCceEEEEE--EEeCC-CEEEecCCCcccC
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKK------LA--------LTSKTPGKTQCINH--FRIND-SWYLVDLPGYGYA 184 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~------~~--------~~~~~~~~t~~~~~--~~~~~-~~~liDtpG~~~~ 184 (308)
+....+|+++|.+++|||||+++|++... .. ......|.|.+... +..++ ++.++||||+..
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~- 156 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD- 156 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH-
Confidence 34456899999999999999999996210 00 01223456655433 33333 799999999632
Q ss_pred CCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhH
Q 021750 185 AAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENL 263 (308)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~ 263 (308)
+.+..+.....+|++++|+|+..+...+..+....+...++| +++++||+|+.+..+ ..+...
T Consensus 157 ------------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~----~~~~i~ 220 (478)
T PLN03126 157 ------------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEE----LLELVE 220 (478)
T ss_pred ------------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHH----HHHHHH
Confidence 555556666677889999999988877777777777778898 778999999975321 011112
Q ss_pred HHHHHHHHhh-hc-CCCCEEEeecCCCCC
Q 021750 264 NDFQELIQGF-FQ-TAPPWIMTSSVTNQG 290 (308)
Q Consensus 264 ~~~~~~~~~~-~~-~~~~~~~vSA~~g~g 290 (308)
+++.+.+... +. ...+++++||.+|.+
T Consensus 221 ~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 221 LEVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 2444444332 11 357899999998853
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-14 Score=139.33 Aligned_cols=118 Identities=15% Similarity=0.157 Sum_probs=78.9
Q ss_pred CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCC--CCEEEEeecCCC
Q 021750 171 DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ--IPMTLVFTKCDK 248 (308)
Q Consensus 171 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~--~pvivV~NK~Dl 248 (308)
.+++++||||+...... .+...+... ...+|+|+||+|+.......+..+.+.+...+ .|+++|+||+|+
T Consensus 230 ~QIIFVDTPGIhk~~~~-----~L~k~M~eq---L~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl 301 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQP-----HLQKMLNQQ---LARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQ 301 (741)
T ss_pred CCEEEEECCCCCCccch-----HHHHHHHHH---HhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccC
Confidence 47899999999743211 122233333 33456799999999877777777777777666 499999999998
Q ss_pred CCcccCCCCCchhhHHHHHH-HHHhhhcCCCCEEEeecCCCCCHHHHHHHHHH
Q 021750 249 RKKKKNGGKRPEENLNDFQE-LIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
.+..+. ..+.+..+.+ .+.........+|++||+.|.|++++++.|.+
T Consensus 302 ~dreed----dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 302 QDRNSD----DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCcccc----hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 642210 1223333322 22222223467999999999999999999876
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4e-15 Score=134.46 Aligned_cols=136 Identities=22% Similarity=0.297 Sum_probs=91.9
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC----------------CEEEecCCCccc
Q 021750 120 CPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND----------------SWYLVDLPGYGY 183 (308)
Q Consensus 120 ~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~----------------~~~liDtpG~~~ 183 (308)
.+..+..||+++|..|||||||+++|++..+.....++.|.+.....+.++. .+.+|||+|..
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE- 94 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE- 94 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh-
Confidence 3445567999999999999999999999876555555666655444444421 38899999943
Q ss_pred CCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc---c---------------CCCCEEEEeec
Q 021750 184 AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG---Q---------------NQIPMTLVFTK 245 (308)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~---~---------------~~~pvivV~NK 245 (308)
+++.++..||..++ ++++|+|.++..++.+. ..|+. . .++|++||+||
T Consensus 95 ---------rfrsL~~~yyr~Ad---giILVyDITdr~SFenL--~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK 160 (334)
T PLN00023 95 ---------RYKDCRSLFYSQIN---GVIFVHDLSQRRTKTSL--QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNK 160 (334)
T ss_pred ---------hhhhhhHHhccCCC---EEEEEEeCCCHHHHHHH--HHHHHHHHHhcccccccccccccCCCCcEEEEEEC
Confidence 56667878877654 48999999987665543 23322 1 14799999999
Q ss_pred CCCCCccc--CCCCCchhhHHHHHHHH
Q 021750 246 CDKRKKKK--NGGKRPEENLNDFQELI 270 (308)
Q Consensus 246 ~Dl~~~~~--~~~~~~~~~~~~~~~~~ 270 (308)
+||...+. ....+..+..+++++..
T Consensus 161 ~DL~~~~~~r~~s~~~~e~a~~~A~~~ 187 (334)
T PLN00023 161 ADIAPKEGTRGSSGNLVDAARQWVEKQ 187 (334)
T ss_pred ccccccccccccccccHHHHHHHHHHc
Confidence 99975431 10012345566666554
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-15 Score=149.99 Aligned_cols=153 Identities=20% Similarity=0.207 Sum_probs=95.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceec----------cCCC----------------------CceEEEE--EEEe
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALT----------SKTP----------------------GKTQCIN--HFRI 169 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~----------~~~~----------------------~~t~~~~--~~~~ 169 (308)
...+|+++|.+|+|||||+++|+.... .+. +... |.|.+.. .+..
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~-~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSK-MIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 345899999999999999999997432 111 1112 3343332 2333
Q ss_pred CC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCC-CCEEEEeecCC
Q 021750 170 ND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ-IPMTLVFTKCD 247 (308)
Q Consensus 170 ~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~-~pvivV~NK~D 247 (308)
++ ++.++||||+. + +..........+|++++|+|+..+...+..+...++...+ +++++|+||+|
T Consensus 102 ~~~~~~liDtPG~~----------~---f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D 168 (632)
T PRK05506 102 PKRKFIVADTPGHE----------Q---YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMD 168 (632)
T ss_pred CCceEEEEECCChH----------H---HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecc
Confidence 33 79999999953 1 3334444556778899999998876655544444554444 57889999999
Q ss_pred CCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHH
Q 021750 248 KRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDE 293 (308)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~e 293 (308)
+.+..+. ...+..+++.+.+........+++++||++|.|+++
T Consensus 169 ~~~~~~~---~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 169 LVDYDQE---VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cccchhH---HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 9752210 011112222222222211236799999999999974
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-14 Score=124.47 Aligned_cols=160 Identities=21% Similarity=0.271 Sum_probs=94.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe-----CCCEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI-----NDSWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
++|+++|++|||||||+++|...++....+ .++.....+.. +..+.+|||||.. +++..+..
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~---s~~~~~~~~~~~~~~~~~~~~l~D~pG~~----------~~~~~~~~ 67 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVT---SIEPNVATFILNSEGKGKKFRLVDVPGHP----------KLRDKLLE 67 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCccC---cEeecceEEEeecCCCCceEEEEECCCCH----------HHHHHHHH
Confidence 479999999999999999999875432211 11222222222 2369999999964 34445556
Q ss_pred HHHhcCCccEEEEEEeCCCCC-ChhHH--HHHHHhc-----cCCCCEEEEeecCCCCCcccCCC--CCchhhHHHHHHHH
Q 021750 201 YFLNRSTLVSVFLLIDASIPA-KPIDL--EYASWLG-----QNQIPMTLVFTKCDKRKKKKNGG--KRPEENLNDFQELI 270 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~-~~~~~--~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~ 270 (308)
++... +++++||+|++... ...+. .+..++. ..++|+++|+||+|+........ ...+.++..+....
T Consensus 68 ~~~~~--~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r 145 (203)
T cd04105 68 TLKNS--AKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESR 145 (203)
T ss_pred HHhcc--CCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 66554 35699999998763 22221 1111211 25899999999999876432100 00111122121111
Q ss_pred Hhh-----------------------h---cCCCCEEEeecCCCC-CHHHHHHHHHH
Q 021750 271 QGF-----------------------F---QTAPPWIMTSSVTNQ-GRDEILLHMAQ 300 (308)
Q Consensus 271 ~~~-----------------------~---~~~~~~~~vSA~~g~-gi~el~~~i~~ 300 (308)
... | ...+.++++|++.+. |++++.+||.+
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 146 SKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred hccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 110 0 112577889998776 69999999865
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-14 Score=123.64 Aligned_cols=166 Identities=19% Similarity=0.206 Sum_probs=102.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC---CCEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN---DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||+++|.+..+.....++.+........... -++.+|||+|.. +++.++..|+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~----------~~~~~~~~y~ 75 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE----------EYRSLRPEYY 75 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHH----------HHHHHHHHHh
Confidence 699999999999999999999986543233332222211122111 148899999954 5667888888
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCc-----hhhHHHHHHHHHh
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRP-----EENLNDFQELIQG 272 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~~ 272 (308)
....+ +++++|........+. .+...+.. ...|+++|+||+|+........... .............
T Consensus 76 ~~~~~---~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (219)
T COG1100 76 RGANG---ILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVL 152 (219)
T ss_pred cCCCE---EEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhh
Confidence 87776 7888888864433332 22222221 3699999999999987643110000 0001111111111
Q ss_pred hhcCCCCEEEeecC--CCCCHHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSV--TNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 273 ~~~~~~~~~~vSA~--~g~gi~el~~~i~~~~~~ 304 (308)
.......++++|++ ++.++++++..+.+.+..
T Consensus 153 ~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 153 PEVANPALLETSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred hhhcccceeEeecccCCCcCHHHHHHHHHHHHHH
Confidence 10112349999999 999999999998887753
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-15 Score=142.92 Aligned_cols=152 Identities=19% Similarity=0.178 Sum_probs=95.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcc-ee------------cc------------------CCCCceEEEE--EEEe
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKL-AL------------TS------------------KTPGKTQCIN--HFRI 169 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~-~~------------~~------------------~~~~~t~~~~--~~~~ 169 (308)
....+|+++|.+++|||||+++|+..... .. .. ...|.|.+.. .+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 44579999999999999999999864310 00 00 0123444432 2333
Q ss_pred CC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCC-CCEEEEeecCC
Q 021750 170 ND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ-IPMTLVFTKCD 247 (308)
Q Consensus 170 ~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~-~pvivV~NK~D 247 (308)
++ ++.++||||+. . +.+........+|++++|+|+..+...+..+...++...+ +|+++|+||+|
T Consensus 105 ~~~~i~~iDTPGh~----------~---f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD 171 (474)
T PRK05124 105 EKRKFIIADTPGHE----------Q---YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMD 171 (474)
T ss_pred CCcEEEEEECCCcH----------H---HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeec
Confidence 33 79999999952 2 3334444456778899999998876554433333333333 57899999999
Q ss_pred CCCcccCCCCCchhhHHHHHHHHHh---hh--cCCCCEEEeecCCCCCHHHH
Q 021750 248 KRKKKKNGGKRPEENLNDFQELIQG---FF--QTAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~vSA~~g~gi~el 294 (308)
+.... .+.++++.+.+.. .+ ....+++++||++|+|++++
T Consensus 172 ~~~~~-------~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 172 LVDYS-------EEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred cccch-------hHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 97432 1223333333322 11 12478999999999999864
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.5e-15 Score=140.03 Aligned_cols=162 Identities=17% Similarity=0.242 Sum_probs=105.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCccee-ccCCCCceEEEE------------------------------------
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLAL-TSKTPGKTQCIN------------------------------------ 165 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~-~~~~~~~t~~~~------------------------------------ 165 (308)
.....|+++|.-..|||||+.+|++-.-... .....|.|.+..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 4456899999999999999999997421000 000111111100
Q ss_pred EEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCC-CChhHHHHHHHhccCCC-CEEEEe
Q 021750 166 HFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIP-AKPIDLEYASWLGQNQI-PMTLVF 243 (308)
Q Consensus 166 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~-~~~~~~~l~~~~~~~~~-pvivV~ 243 (308)
.......+.++||||+. .+.+..+.....+|++++|+|+..+ ...+..+....+...++ ++|+|+
T Consensus 112 ~~~~~~~i~~IDtPGH~-------------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvl 178 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHD-------------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQ 178 (460)
T ss_pred cccccceEeeeeCCCHH-------------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEE
Confidence 00112368999999953 2666666777788899999999975 34333333444443444 589999
Q ss_pred ecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 244 TKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 244 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
||+|+.+... ..+..+++.+.+...+....+++++||++|+|+++|+++|.+.+
T Consensus 179 NKiDlv~~~~-----~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 179 NKIDLVKEAQ-----AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred ecccccCHHH-----HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 9999985322 23334455554444334568999999999999999999998644
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.8e-15 Score=131.00 Aligned_cols=140 Identities=13% Similarity=0.136 Sum_probs=91.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC----cceecc------------CCCCceEEE--EEEEeCC-CEEEecCCCcccCCCc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK----KLALTS------------KTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAP 187 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~----~~~~~~------------~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~ 187 (308)
+|+++|.+|+|||||+++|+... ....+. ...|+|... ..+.+++ ++.++||||+.+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d---- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD---- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence 58999999999999999997421 111111 123555542 3445555 799999999642
Q ss_pred hhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHH
Q 021750 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQ 267 (308)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~ 267 (308)
|...+..++ ..+|++++|+|+..+.......+...+...++|+++++||+|+.... ....++++.
T Consensus 77 ------f~~~~~~~l---~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~------~~~~~~~l~ 141 (270)
T cd01886 77 ------FTIEVERSL---RVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGAD------FFRVVEQIR 141 (270)
T ss_pred ------HHHHHHHHH---HHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC------HHHHHHHHH
Confidence 222333333 34456999999998887777777777777889999999999987532 223345555
Q ss_pred HHHHhhhcCCCCEEEeecCC
Q 021750 268 ELIQGFFQTAPPWIMTSSVT 287 (308)
Q Consensus 268 ~~~~~~~~~~~~~~~vSA~~ 287 (308)
+.++.. ....++++|+..
T Consensus 142 ~~l~~~--~~~~~~Pisa~~ 159 (270)
T cd01886 142 EKLGAN--PVPLQLPIGEED 159 (270)
T ss_pred HHhCCC--ceEEEeccccCC
Confidence 544321 224567777763
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.7e-14 Score=132.35 Aligned_cols=166 Identities=20% Similarity=0.256 Sum_probs=123.5
Q ss_pred CCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe----CCCEEEecCCCcccCCCchhhhh
Q 021750 117 TEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI----NDSWYLVDLPGYGYAAAPRELRT 192 (308)
Q Consensus 117 ~~~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtpG~~~~~~~~~~~~ 192 (308)
.|....+..|-|-++|.-.-|||||+.+|-+... .....-|.|..+.-|.+ +.+++|+||||+.
T Consensus 145 ~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~V--AA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHa---------- 212 (683)
T KOG1145|consen 145 DPKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSV--AAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHA---------- 212 (683)
T ss_pred CHhhcCCCCCeEEEeecccCChhhHHHHHhhCce--ehhhcCCccceeceEEEecCCCCEEEEecCCcHH----------
Confidence 3444556778999999999999999999988642 24455677777665554 3389999999953
Q ss_pred chHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHH--H
Q 021750 193 DWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQEL--I 270 (308)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~ 270 (308)
.|..|. -+.+...|++++|+.+.++...+..+-.......+.|++|.+||||.++.. ++...+++... .
T Consensus 213 AF~aMR---aRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~------pekv~~eL~~~gi~ 283 (683)
T KOG1145|consen 213 AFSAMR---ARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGAN------PEKVKRELLSQGIV 283 (683)
T ss_pred HHHHHH---hccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCC------HHHHHHHHHHcCcc
Confidence 333332 267777899999999999999998888889999999999999999988643 23333333221 0
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
-+..+...+++++||++|+|++.|.+.+.-+.+
T Consensus 284 ~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 284 VEDLGGDVQVIPISALTGENLDLLEEAILLLAE 316 (683)
T ss_pred HHHcCCceeEEEeecccCCChHHHHHHHHHHHH
Confidence 112334589999999999999999998776544
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-14 Score=128.35 Aligned_cols=126 Identities=19% Similarity=0.337 Sum_probs=79.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceecc-------CCCCc-eEEE--EEEEeCC---CEEEecCCCcccCCCchhhh
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTS-------KTPGK-TQCI--NHFRIND---SWYLVDLPGYGYAAAPRELR 191 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~-------~~~~~-t~~~--~~~~~~~---~~~liDtpG~~~~~~~~~~~ 191 (308)
.++|+++|.+|+|||||+|+|++........ ....+ .... ..+..++ ++.+|||||+++........
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 4699999999999999999999976432211 11222 1221 2233333 69999999997643322211
Q ss_pred --------hchHHHHHHHH---H----hcCCccEEEEEEeCCC-CCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 192 --------TDWDKFTKDYF---L----NRSTLVSVFLLIDASI-PAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 192 --------~~~~~~~~~~~---~----~~~~~~~vl~viD~~~-~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
.++...+.+.. + .-..+++|+|+++.+. +....+.++++++.. .+|+++|+||+|+...
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCCH
Confidence 11111111111 0 1124578999999874 566777888888875 7999999999999753
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.3e-15 Score=126.58 Aligned_cols=153 Identities=15% Similarity=0.112 Sum_probs=89.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCccee-----------cc------CCCCceEEEE--EEEe----C--CCEEEecCCCc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLAL-----------TS------KTPGKTQCIN--HFRI----N--DSWYLVDLPGY 181 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~-----------~~------~~~~~t~~~~--~~~~----~--~~~~liDtpG~ 181 (308)
+|+++|.+|+|||||+++|+....... .. ...|.+.... .+.+ + ..+.+|||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 699999999999999999997432110 00 1122332211 1111 1 25889999996
Q ss_pred ccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCC-CCCch
Q 021750 182 GYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNG-GKRPE 260 (308)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~-~~~~~ 260 (308)
.+ +......++.. +|++++|+|+..+......++.......++|+++|+||+|+...+... .....
T Consensus 82 ~~----------f~~~~~~~~~~---aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~ 148 (213)
T cd04167 82 VN----------FMDEVAAALRL---SDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAY 148 (213)
T ss_pred cc----------hHHHHHHHHHh---CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHH
Confidence 52 32344444443 455999999998776655554455555679999999999986221100 00011
Q ss_pred hhHHHHHHHHHhhh------------cCCCCEEEeecCCCCCHH
Q 021750 261 ENLNDFQELIQGFF------------QTAPPWIMTSSVTNQGRD 292 (308)
Q Consensus 261 ~~~~~~~~~~~~~~------------~~~~~~~~vSA~~g~gi~ 292 (308)
+.+.+..+.++... +....+++.||+.+++++
T Consensus 149 ~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 149 FKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 22223333332221 112338899999998876
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-14 Score=133.49 Aligned_cols=160 Identities=21% Similarity=0.324 Sum_probs=117.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe--C----CCEEEecCCCcccCCCchhhhhchHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI--N----DSWYLVDLPGYGYAAAPRELRTDWDKF 197 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~--~----~~~~liDtpG~~~~~~~~~~~~~~~~~ 197 (308)
..|-|.++|.-..|||||+..+-+... .....-|.|..+.-+.+ + ..++++||||+. . |
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~V--a~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHe----------A---F 68 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNV--AAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHE----------A---F 68 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcc--ccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHH----------H---H
Confidence 346799999999999999999987642 23344567776644433 2 379999999953 2 3
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHH--HHhhhc
Q 021750 198 TKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQEL--IQGFFQ 275 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 275 (308)
+...-+.+...|++++|+|+.++...+..+-...+...+.|++|++||+|+++.+ +.....++.+. ..+.++
T Consensus 69 t~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~n------p~~v~~el~~~gl~~E~~g 142 (509)
T COG0532 69 TAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEAN------PDKVKQELQEYGLVPEEWG 142 (509)
T ss_pred HHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCC------HHHHHHHHHHcCCCHhhcC
Confidence 3222266777889999999999999998888888889999999999999999543 22222222221 122334
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
....++++||++|+|+++|++.+.-+.+-
T Consensus 143 g~v~~VpvSA~tg~Gi~eLL~~ill~aev 171 (509)
T COG0532 143 GDVIFVPVSAKTGEGIDELLELILLLAEV 171 (509)
T ss_pred CceEEEEeeccCCCCHHHHHHHHHHHHHH
Confidence 45889999999999999999988765543
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-14 Score=143.73 Aligned_cols=117 Identities=16% Similarity=0.179 Sum_probs=85.8
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCC----cceecc------------CCCCceEEE--EEEEeCC-CEEEecCCCc
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRK----KLALTS------------KTPGKTQCI--NHFRIND-SWYLVDLPGY 181 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~----~~~~~~------------~~~~~t~~~--~~~~~~~-~~~liDtpG~ 181 (308)
....+.+|+|+|.+|+|||||+++|+... ....+. ...|+|.+. ..+.+++ ++.++||||+
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~ 85 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGH 85 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCc
Confidence 34557799999999999999999997411 111111 234566543 3444545 8999999996
Q ss_pred ccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 182 GYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
.+ +..+.......+|++++|+|+..+...++..+..++...++|+++++||+|+..
T Consensus 86 ~~-------------f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 86 VD-------------FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTG 141 (693)
T ss_pred HH-------------HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 42 333344455566789999999999888888888888888999999999999874
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.1e-15 Score=131.39 Aligned_cols=112 Identities=19% Similarity=0.287 Sum_probs=74.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcc----eeccC------------CCCceE--EEEEEEeCC-CEEEecCCCcccCCCc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKL----ALTSK------------TPGKTQ--CINHFRIND-SWYLVDLPGYGYAAAP 187 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~----~~~~~------------~~~~t~--~~~~~~~~~-~~~liDtpG~~~~~~~ 187 (308)
+|+++|.+|+|||||+++|+..... ..+.. ..+.+. ....+.+++ ++.+|||||..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~----- 75 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYA----- 75 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHH-----
Confidence 5899999999999999999863210 00000 001111 223444454 78999999964
Q ss_pred hhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
.|...+..++. .+|++++|+|++.+.......+..++...++|+++++||+|+...
T Consensus 76 -----~f~~~~~~~l~---~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 76 -----DFVGETRAALR---AADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA 131 (268)
T ss_pred -----HHHHHHHHHHH---HCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC
Confidence 22223334443 445699999999887766666666777788999999999998754
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.4e-15 Score=118.58 Aligned_cols=162 Identities=17% Similarity=0.203 Sum_probs=112.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCc--ce---eccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKK--LA---LTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~--~~---~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
...|+|+|..|+|||||+.++-.... +. ...-.+.....+..+.+.. .+.+||..|. + ..+++|
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQ-------e---~lrSlw 86 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQ-------E---SLRSLW 86 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCCh-------H---HHHHHH
Confidence 34799999999999999998865321 00 0111222333445555555 7999999883 3 566799
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHH--HHHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDL--EYASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
..||..+.+ ++|+||++++....+. .+.... ...+.|+++.+||-|+.+.. ...+++.........
T Consensus 87 ~~yY~~~H~---ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~------~~~El~~~~~~~e~~ 157 (197)
T KOG0076|consen 87 KKYYWLAHG---IIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM------EAAELDGVFGLAELI 157 (197)
T ss_pred HHHHHHhce---eEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh------hHHHHHHHhhhhhhc
Confidence 999988776 8999999986654432 222222 23789999999999998754 233444444432222
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
-....++.+|||.+|+||++-.+|+...+...
T Consensus 158 ~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 158 PRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred CCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 23458999999999999999999999887654
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-14 Score=142.39 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=83.7
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCCc----ceecc------------CCCCceEEE--EEEEeCC-CEEEecCCC
Q 021750 120 CPSDGLPEFALVGRSNVGKSSLLNSLVRRKK----LALTS------------KTPGKTQCI--NHFRIND-SWYLVDLPG 180 (308)
Q Consensus 120 ~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~----~~~~~------------~~~~~t~~~--~~~~~~~-~~~liDtpG 180 (308)
.....+.+|+|+|.+|+|||||+++|+.... ...+. ...|+|... ..+.+++ ++.+|||||
T Consensus 5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG 84 (689)
T TIGR00484 5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPG 84 (689)
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCC
Confidence 3445677999999999999999999975321 00011 124555543 4455555 899999999
Q ss_pred cccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 181 YGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
+.+ +...+..++.. +|++++|+|+..+.......+..++...++|+++|+||+|+...
T Consensus 85 ~~~----------~~~~~~~~l~~---~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 85 HVD----------FTVEVERSLRV---LDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred Ccc----------hhHHHHHHHHH---hCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 853 21223333333 45699999999888777777777777788999999999998753
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-14 Score=136.23 Aligned_cols=152 Identities=17% Similarity=0.238 Sum_probs=99.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCc-c----------------------eecc------CCCCceEEEEEE--EeCC-
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKK-L----------------------ALTS------KTPGKTQCINHF--RIND- 171 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~-~----------------------~~~~------~~~~~t~~~~~~--~~~~- 171 (308)
...+|+++|..++|||||+.+|+..-. + +... ...|.|.+...+ .+++
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 345899999999999999999986210 0 0011 123556554333 3333
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-------ChhHHHHHHHhccCCCC-EEEEe
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-------KPIDLEYASWLGQNQIP-MTLVF 243 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~-------~~~~~~l~~~~~~~~~p-vivV~ 243 (308)
.+.++||||+.+ |..........+|++++|+|+..+. ..+..+...++...++| +|+++
T Consensus 86 ~i~lIDtPGh~~-------------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~v 152 (446)
T PTZ00141 86 YFTIIDAPGHRD-------------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCI 152 (446)
T ss_pred EEEEEECCChHH-------------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEE
Confidence 789999999542 5666666677888899999999765 23444556666667877 57899
Q ss_pred ecCCCCCcccCCCCCchhhHHHHHHHHHhhhc------CCCCEEEeecCCCCCHHH
Q 021750 244 TKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ------TAPPWIMTSSVTNQGRDE 293 (308)
Q Consensus 244 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~vSA~~g~gi~e 293 (308)
||+|...... .++..+++.+.+...+. ...+++++||.+|+|+.+
T Consensus 153 NKmD~~~~~~-----~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 153 NKMDDKTVNY-----SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred Eccccccchh-----hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 9999542110 12233333333333221 247899999999999964
|
|
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=113.24 Aligned_cols=154 Identities=18% Similarity=0.234 Sum_probs=110.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCccee------ccCCC--CceEE--EEEEEeCC--CEEEecCCCcccCCCchhhhh
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLAL------TSKTP--GKTQC--INHFRIND--SWYLVDLPGYGYAAAPRELRT 192 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~------~~~~~--~~t~~--~~~~~~~~--~~~liDtpG~~~~~~~~~~~~ 192 (308)
..||+++|..++||||++.+++....+.. .+... .+|.. .....+++ .+.++||||..
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~---------- 79 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQE---------- 79 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcH----------
Confidence 45999999999999999999998642111 01111 13332 33344444 79999999954
Q ss_pred chHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCC-CCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH
Q 021750 193 DWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ-IPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ 271 (308)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~-~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 271 (308)
+|.-+|..+.+. ++.+++++|.+.+......++..++.... +|++|.+||.|+.+.. +.+.+.++.+.-.
T Consensus 80 RF~fm~~~l~~g---a~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~------ppe~i~e~l~~~~ 150 (187)
T COG2229 80 RFKFMWEILSRG---AVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDAL------PPEKIREALKLEL 150 (187)
T ss_pred HHHHHHHHHhCC---cceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCC------CHHHHHHHHHhcc
Confidence 566666665555 44589999999998886677777777655 9999999999999765 3444444433321
Q ss_pred hhhcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 272 GFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 272 ~~~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
...++++++|.++++..+.++.+...
T Consensus 151 ----~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 151 ----LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred ----CCCceeeeecccchhHHHHHHHHHhh
Confidence 24899999999999999988877654
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.8e-14 Score=135.92 Aligned_cols=114 Identities=21% Similarity=0.300 Sum_probs=77.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCC-cc---eec----------cC------CCCceEE--EEEEEeCC-CEEEecCCC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRK-KL---ALT----------SK------TPGKTQC--INHFRIND-SWYLVDLPG 180 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~-~~---~~~----------~~------~~~~t~~--~~~~~~~~-~~~liDtpG 180 (308)
...+|+|+|.+|+|||||+++|+... .+ ..+ ++ ..|.+.. ...+.+++ .+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 45699999999999999999997421 00 000 10 1122222 23455555 799999999
Q ss_pred cccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 181 YGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
+. .|......++. .+|++++|+|++.+.......+.......++|+++++||+|+..
T Consensus 89 ~~----------df~~~~~~~l~---~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 89 HE----------DFSEDTYRTLT---AVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDG 145 (526)
T ss_pred ch----------hhHHHHHHHHH---HCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccc
Confidence 64 22223334443 45669999999988766666666777778999999999999865
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-14 Score=130.81 Aligned_cols=83 Identities=23% Similarity=0.242 Sum_probs=55.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEE---------------------eCC----CEEEecCCC
Q 021750 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFR---------------------IND----SWYLVDLPG 180 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~---------------------~~~----~~~liDtpG 180 (308)
|+++|.||||||||+|+|++.+. .+..+|++|.... ... .++ .+.+|||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~--~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV--EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC--cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 58999999999999999999753 4566666654321 111 111 589999999
Q ss_pred cccCC-CchhhhhchHHHHHHHHHhcCCccEEEEEEeCCC
Q 021750 181 YGYAA-APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASI 219 (308)
Q Consensus 181 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~ 219 (308)
+..+. .+.+ +...|+.....+|++++|+|+..
T Consensus 79 lv~ga~~~~g-------lg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 79 LVPGAHEGKG-------LGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCCCccchhh-------HHHHHHHHHHHCCEEEEEEeCCC
Confidence 97542 2222 33444444455667999999973
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.4e-14 Score=141.48 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=83.9
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCC----cceecc------------CCCCceEEE--EEEEeCC-CEEEecCCCcc
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRK----KLALTS------------KTPGKTQCI--NHFRIND-SWYLVDLPGYG 182 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~----~~~~~~------------~~~~~t~~~--~~~~~~~-~~~liDtpG~~ 182 (308)
...+.+|+++|.+|+|||||+++|+... ....+. ...|+|... ..+.+++ ++.++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 3456799999999999999999997521 111111 133555543 3455555 89999999964
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
+ +..+.......+|++++|+|+..+...++..+..++...++|+++++||+|+...
T Consensus 85 ~-------------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 85 D-------------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred H-------------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 2 2223334444556799999999988887778888888889999999999998853
|
|
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-14 Score=133.04 Aligned_cols=168 Identities=17% Similarity=0.175 Sum_probs=109.0
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
.+....++|+|.||||||||+|.++..+ ..+.+++.||.. +.++.+.. +|.++||||+.+....+....++..++
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtrad--vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRAD--DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccc--cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence 3445689999999999999999999876 457778877775 45555554 799999999975332211111222222
Q ss_pred HHHHHhcCCccEEEEEEeCCCCC--ChhH-HHHHHHhc--cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPA--KPID-LEYASWLG--QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~--~~~~-~~l~~~~~--~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
.+.....+ |+|++|.+... +..+ ..+.+-+. -.++|+|+|+||+|+..... ..+.-+++.+.+.+.
T Consensus 243 --ALAHLraa--VLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~ed-----L~~~~~~ll~~~~~~ 313 (620)
T KOG1490|consen 243 --ALAHLRSA--VLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPED-----LDQKNQELLQTIIDD 313 (620)
T ss_pred --HHHHhhhh--heeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccc-----cCHHHHHHHHHHHhc
Confidence 22233333 89999998543 2222 12222222 16899999999999987554 222233333433322
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..++++.+|+.+.+|+-++....++.+
T Consensus 314 --~~v~v~~tS~~~eegVm~Vrt~ACe~L 340 (620)
T KOG1490|consen 314 --GNVKVVQTSCVQEEGVMDVRTTACEAL 340 (620)
T ss_pred --cCceEEEecccchhceeeHHHHHHHHH
Confidence 127899999999999998887777654
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=120.97 Aligned_cols=142 Identities=21% Similarity=0.184 Sum_probs=92.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
..|+++|.+|+|||||++.|.+...........|+ .... ...+.++.++||||.. ...+...
T Consensus 40 ~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~-~~~~~~i~~vDtPg~~----------------~~~l~~a 101 (225)
T cd01882 40 LVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVV-TGKKRRLTFIECPNDI----------------NAMIDIA 101 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEE-ecCCceEEEEeCCchH----------------HHHHHHH
Confidence 47999999999999999999875221222233332 1111 1124489999999832 1112223
Q ss_pred CCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEE-EEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEee
Q 021750 206 STLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMT-LVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTS 284 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvi-vV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS 284 (308)
..+|++++|+|++.+....+..+..++...++|.+ +|+||+|+.+..+ ...+..+++.+.+...+..+.+++++|
T Consensus 102 k~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~----~~~~~~~~l~~~~~~~~~~~~ki~~iS 177 (225)
T cd01882 102 KVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNK----TLRKTKKRLKHRFWTEVYQGAKLFYLS 177 (225)
T ss_pred HhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHH----HHHHHHHHHHHHHHHhhCCCCcEEEEe
Confidence 45677999999998887777777888877788855 5999999874321 012233444443433333468999999
Q ss_pred cCCCC
Q 021750 285 SVTNQ 289 (308)
Q Consensus 285 A~~g~ 289 (308)
|++.-
T Consensus 178 a~~~~ 182 (225)
T cd01882 178 GIVHG 182 (225)
T ss_pred eccCC
Confidence 99873
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-13 Score=123.97 Aligned_cols=113 Identities=22% Similarity=0.308 Sum_probs=75.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCc----ceec----------cCC------CCceEE--EEEEEeCC-CEEEecCCCcc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKK----LALT----------SKT------PGKTQC--INHFRIND-SWYLVDLPGYG 182 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~----~~~~----------~~~------~~~t~~--~~~~~~~~-~~~liDtpG~~ 182 (308)
.+|+++|.+|+|||||+++|+.... ...+ .+. .+.+.. ...+.+++ ++.+|||||..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 5899999999999999999986321 0000 010 122222 23445555 79999999964
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
+|......++. .+|++++|+|++.+.......+..+....++|+++++||+|+...
T Consensus 83 ----------df~~~~~~~l~---~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 ----------DFSEDTYRTLT---AVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred ----------HHHHHHHHHHH---HCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCC
Confidence 22222333444 345689999999876655555566666678999999999998654
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.6e-14 Score=117.32 Aligned_cols=128 Identities=13% Similarity=0.074 Sum_probs=84.6
Q ss_pred ccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHH--HH
Q 021750 154 TSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL--EY 228 (308)
Q Consensus 154 ~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~--~l 228 (308)
+.++.|.......+.+++ .+.+|||||.. ++..++..|++. ++++++|+|.++..++.+. .+
T Consensus 9 ~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e----------~~~~~~~~~~~~---ad~~ilv~D~t~~~sf~~~~~w~ 75 (176)
T PTZ00099 9 YQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE----------RFRSLIPSYIRD---SAAAIVVYDITNRQSFENTTKWI 75 (176)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEECCChH----------HhhhccHHHhCC---CcEEEEEEECCCHHHHHHHHHHH
Confidence 444555554444455544 68899999953 455566677654 4559999999987665543 11
Q ss_pred HHHhc--cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 229 ASWLG--QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 229 ~~~~~--~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..... ....|+++|+||+|+..... +..+....+.+.+ ...++++||++|+|++++|++|.+.+.+
T Consensus 76 ~~i~~~~~~~~piilVgNK~DL~~~~~----v~~~e~~~~~~~~------~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 76 QDILNERGKDVIIALVGNKTDLGDLRK----VTYEEGMQKAQEY------NTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred HHHHHhcCCCCeEEEEEECcccccccC----CCHHHHHHHHHHc------CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 12222 24688999999999975332 2333333333322 2578999999999999999999988754
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=138.60 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=80.4
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCc-c---e------eccC------CCCceEE--EEEEEeCC-CEEEecCCCcc
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKK-L---A------LTSK------TPGKTQC--INHFRIND-SWYLVDLPGYG 182 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~-~---~------~~~~------~~~~t~~--~~~~~~~~-~~~liDtpG~~ 182 (308)
.....+|+++|..|+|||||+++|+.... . . ...+ ..+.|.. ...+.+++ .+.+|||||..
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 34567999999999999999999986321 0 0 0010 1222322 23444544 79999999974
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
+|...+..++... |++++|+|++.+.......+...+...++|+++|+||+|+...
T Consensus 85 ----------df~~~~~~~l~~a---D~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 ----------DFTGEVERSLRVL---DGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred ----------HHHHHHHHHHHhC---CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC
Confidence 2333444555444 5589999999887776666666777778999999999998854
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=119.65 Aligned_cols=110 Identities=16% Similarity=0.164 Sum_probs=73.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcc-e-------ec------cCCCCceEEE--EEEEeC----------C-CEEEecCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKL-A-------LT------SKTPGKTQCI--NHFRIN----------D-SWYLVDLP 179 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~-~-------~~------~~~~~~t~~~--~~~~~~----------~-~~~liDtp 179 (308)
+|+++|..++|||||+.+|+..... . .. ....|.|... ..+.+. + .+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 7999999999999999999864210 0 00 0011222221 111221 2 58899999
Q ss_pred CcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCC
Q 021750 180 GYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249 (308)
Q Consensus 180 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~ 249 (308)
|.. .|......++..+ |++++|+|+..+......++.+.....++|+++|+||+|+.
T Consensus 82 G~~----------~f~~~~~~~l~~a---D~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHV----------DFSSEVTAALRLC---DGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred Ccc----------ccHHHHHHHHHhc---CeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 975 2333444444444 45899999999887777666666666789999999999986
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-14 Score=121.83 Aligned_cols=158 Identities=20% Similarity=0.216 Sum_probs=111.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-C---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-D---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..|+++||+.++|||+|+..+..+.+...+.++..-.+ ...+.++ + .+.+|||.|..+ +..+. .
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~LwDTAGqed----------YDrlR-p 71 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLWDTAGQED----------YDRLR-P 71 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeeeecCCCcc----------ccccc-c
Confidence 35899999999999999999988866544444433222 2334453 4 588999999542 22222 1
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-----CCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHH
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-----NQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQ 267 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-----~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~ 267 (308)
..-...|+++++++..++.+..+.. .+|+.+ .+.|+|+|++|.||.++.. ....+..++...++
T Consensus 72 --lsY~~tdvfl~cfsv~~p~S~~nv~-~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA 148 (198)
T KOG0393|consen 72 --LSYPQTDVFLLCFSVVSPESFENVK-SKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELA 148 (198)
T ss_pred --cCCCCCCEEEEEEEcCChhhHHHHH-hhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHH
Confidence 1333446678889998888877642 455543 6899999999999985321 12235667777787
Q ss_pred HHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 268 ELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 268 ~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+.++ ...|++|||++..|++++|+......
T Consensus 149 ~~ig-----a~~y~EcSa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 149 KEIG-----AVKYLECSALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred HHhC-----cceeeeehhhhhCCcHHHHHHHHHHH
Confidence 7776 37899999999999999999877654
|
|
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.3e-15 Score=115.64 Aligned_cols=158 Identities=16% Similarity=0.201 Sum_probs=110.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
...+|.++|-.|+||++++.++--.+ .++..|.....+..+.+.+ ++.+||..|.. .++..|+.||
T Consensus 17 ~e~rililgldGaGkttIlyrlqvge---vvttkPtigfnve~v~yKNLk~~vwdLggqt----------SirPyWRcYy 83 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGE---VVTTKPTIGFNVETVPYKNLKFQVWDLGGQT----------SIRPYWRCYY 83 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCc---ccccCCCCCcCccccccccccceeeEccCcc----------cccHHHHHHh
Confidence 34589999999999999998886653 3445555555566666655 89999998843 4566999999
Q ss_pred HhcCCccEEEEEEeCCCCCC--hhHHHHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHH-HHHHHhhhcC
Q 021750 203 LNRSTLVSVFLLIDASIPAK--PIDLEYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDF-QELIQGFFQT 276 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~--~~~~~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 276 (308)
.+.+. ++||+|.++... ....++...+.+ .+..+++++||.|...... ..+....+ ...++ ..
T Consensus 84 ~dt~a---vIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t-----~~E~~~~L~l~~Lk---~r 152 (182)
T KOG0072|consen 84 ADTDA---VIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALT-----RSEVLKMLGLQKLK---DR 152 (182)
T ss_pred cccce---EEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhh-----HHHHHHHhChHHHh---hh
Confidence 87765 899999987543 333345555543 5677889999999876432 11111111 11111 12
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.+.+|..||.+|+|+++.++|+.+-+++.
T Consensus 153 ~~~Iv~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 153 IWQIVKTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred eeEEEeeccccccCCcHHHHHHHHHHhcc
Confidence 37899999999999999999999988753
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-13 Score=128.01 Aligned_cols=84 Identities=25% Similarity=0.265 Sum_probs=57.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEE--EE---------------------eC----CCEEEecC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH--FR---------------------IN----DSWYLVDL 178 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~--~~---------------------~~----~~~~liDt 178 (308)
++|+|+|.||||||||+|+|++.+. .+...|++|..... .. .+ -.+.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~--~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV--EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc--cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 5899999999999999999998753 34566666654321 11 11 14789999
Q ss_pred CCcccCC-CchhhhhchHHHHHHHHHhcCCccEEEEEEeCC
Q 021750 179 PGYGYAA-APRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS 218 (308)
Q Consensus 179 pG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~ 218 (308)
||+..+. .+.+ +...|+.....+|++++|+|+.
T Consensus 80 aGl~~ga~~g~g-------lg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRG-------LGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhh-------HHHHHHHHHHHCCEEEEEEeCC
Confidence 9997642 2233 3334444455567799999996
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.7e-13 Score=130.84 Aligned_cols=115 Identities=18% Similarity=0.280 Sum_probs=75.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCC-cce---ec----------cC------CCCceEE--EEEEEeCC-CEEEecCC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRK-KLA---LT----------SK------TPGKTQC--INHFRIND-SWYLVDLP 179 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~-~~~---~~----------~~------~~~~t~~--~~~~~~~~-~~~liDtp 179 (308)
....+|+|+|.+|+|||||+++|+... .+. .+ ++ ..|.+.. ...+.+++ ++.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 345699999999999999999986421 110 01 00 1123332 23344544 79999999
Q ss_pred CcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 180 GYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 180 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
|+. .|......++ ..+|++++|+|++.+.......+...+...++|+++++||+|+..
T Consensus 89 G~~----------df~~~~~~~l---~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHE----------DFSEDTYRTL---TAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred Chh----------hHHHHHHHHH---HhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccC
Confidence 963 2222223333 345669999999987665555566666667899999999999864
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.4e-14 Score=109.58 Aligned_cols=108 Identities=25% Similarity=0.340 Sum_probs=67.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcc--eeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKL--ALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~--~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
||+++|.+|||||||+++|++.... .......+.+.......... .+.+||++|... +...+..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~----------~~~~~~~~ 70 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEE----------FYSQHQFF 70 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHC----------HHCTSHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccce----------ecccccch
Confidence 7999999999999999999997643 12233334444333333322 478999999632 11111222
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHhcc-----CCCCEEEEeecCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWLGQ-----NQIPMTLVFTKCD 247 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~~-----~~~pvivV~NK~D 247 (308)
+.. ++++++|+|.+++.+.... ++..|+.. .+.|+++|+||.|
T Consensus 71 ~~~---~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 71 LKK---ADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHH---SCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred hhc---CcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 333 3459999999987655553 34444442 4699999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.4e-13 Score=119.78 Aligned_cols=121 Identities=25% Similarity=0.242 Sum_probs=75.9
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecC
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKC 246 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~ 246 (308)
.+.++||||..+...... .+..+.+. +.... .+++++|+|++...+..+.....++. ..++|+++|+||+
T Consensus 98 ~~~~~d~~g~~~~~~~~~---~~~~~~~~-l~~~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~ 172 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRE---SGRKLVER-LSGSS-KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKA 172 (253)
T ss_pred CEEEEeCCcHHHHHhhhH---HHHHHHHH-HHhcC-CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhH
Confidence 689999999754221122 12223322 22211 56799999998776666654444432 4689999999999
Q ss_pred CCCCcccCCCCCchhhHHH------------------------HHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 247 DKRKKKKNGGKRPEENLND------------------------FQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 247 Dl~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
|+.+..+ .....+. +.+.+.+. ....+++++||++++|+++++++|.+.+
T Consensus 173 D~~~~~~-----~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~-~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 173 DLLSEEE-----LERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEET-GLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred hhcCchh-----HHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHH-CCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 9986543 1111111 11112221 2235899999999999999999998876
Q ss_pred H
Q 021750 303 N 303 (308)
Q Consensus 303 ~ 303 (308)
.
T Consensus 247 ~ 247 (253)
T PRK13768 247 C 247 (253)
T ss_pred C
Confidence 4
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-13 Score=127.23 Aligned_cols=159 Identities=17% Similarity=0.204 Sum_probs=112.3
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCc-ce------------eccCCCCceEEEE---EEEeCC---CEEEecCCCc
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKK-LA------------LTSKTPGKTQCIN---HFRIND---SWYLVDLPGY 181 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~-~~------------~~~~~~~~t~~~~---~~~~~~---~~~liDtpG~ 181 (308)
|.+...+++||-.-.-|||||..+|+.-.. +. .+....|.|...+ .+..++ .+.++||||+
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 456678999999999999999999986321 00 1223446665432 111222 5889999998
Q ss_pred ccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchh
Q 021750 182 GYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEE 261 (308)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~ 261 (308)
.+.... .-+....++++++|+|++.+...+...-....-+.+..+|.|+||+|++..+
T Consensus 136 vDFs~E-------------VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~ad--------- 193 (650)
T KOG0462|consen 136 VDFSGE-------------VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSAD--------- 193 (650)
T ss_pred ccccce-------------ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCC---------
Confidence 753321 1133344566999999999988877654555557889999999999998765
Q ss_pred hHHHHHHHHHhhhc-CCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 262 NLNDFQELIQGFFQ-TAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 262 ~~~~~~~~~~~~~~-~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.++....+.+.|. ...+++.+||++|.|+++++++|++.+
T Consensus 194 -pe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 194 -PERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred -HHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhC
Confidence 4445555555444 346899999999999999999998864
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.2e-13 Score=127.07 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=94.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCc-c----------------------eec------cCCCCceEEEEEEEe--CC-
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKK-L----------------------ALT------SKTPGKTQCINHFRI--ND- 171 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~-~----------------------~~~------~~~~~~t~~~~~~~~--~~- 171 (308)
...+|+++|..++|||||+.+|+..-. + +.. ....|.|.+.....+ ++
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 345899999999999999999975210 0 000 112255555433333 33
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCC-------hhHHHHHHHhccCCCC-EEEEe
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAK-------PIDLEYASWLGQNQIP-MTLVF 243 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~-------~~~~~l~~~~~~~~~p-vivV~ 243 (308)
.+.++||||+. + |.+........+|++++|+|+..+.- .+-.+...++...++| +|+++
T Consensus 86 ~i~liDtPGh~----------d---f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~v 152 (447)
T PLN00043 86 YCTVIDAPGHR----------D---FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCC 152 (447)
T ss_pred EEEEEECCCHH----------H---HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEE
Confidence 69999999954 2 55555555667788999999987521 2223344445556775 68899
Q ss_pred ecCCCCCcccCCCCCchhhHHHHHHHHHhhh--cCCCCEEEeecCCCCCHHH
Q 021750 244 TKCDKRKKKKNGGKRPEENLNDFQELIQGFF--QTAPPWIMTSSVTNQGRDE 293 (308)
Q Consensus 244 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vSA~~g~gi~e 293 (308)
||+|+..... ......+..+++...+.+.. ....+++++||++|+|+.+
T Consensus 153 NKmD~~~~~~-~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 153 NKMDATTPKY-SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EcccCCchhh-hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 9999862110 00002222334444443221 1237899999999999854
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-12 Score=113.61 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=80.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEE--EeCC-CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHF--RIND-SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+|+|.+|||||||+|+|++... ..++...+.|.....+ ..++ .+.+|||||+.+................
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~-~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERK-AATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 4456999999999999999999999754 3445555555544333 2334 7999999999864322211122222334
Q ss_pred HHHHhcCCccEEEEEEeCCC-CCChhHHHHHHHhcc-----CCCCEEEEeecCCCCCccc
Q 021750 200 DYFLNRSTLVSVFLLIDASI-PAKPIDLEYASWLGQ-----NQIPMTLVFTKCDKRKKKK 253 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~-~~~~~~~~l~~~~~~-----~~~pvivV~NK~Dl~~~~~ 253 (308)
.|+. ....++++||...+. .....+..+.+.+.+ .-.++++|+||+|......
T Consensus 108 ~~l~-~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 108 RYLK-KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHh-ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 4443 334566777765543 234444455554442 2367999999999875543
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-12 Score=120.12 Aligned_cols=86 Identities=20% Similarity=0.279 Sum_probs=60.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeC------------------CCEEEecCCCccc
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIN------------------DSWYLVDLPGYGY 183 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~------------------~~~~liDtpG~~~ 183 (308)
.-.+|+|||.||||||||+|+|++.+ ..+.+.|++|.... .+.+. .++.++||||+..
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~--~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ--VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc--ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 34599999999999999999998865 56788888886532 22222 1489999999986
Q ss_pred CCC-chhhhhchHHHHHHHHHhcCCccEEEEEEeCC
Q 021750 184 AAA-PRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS 218 (308)
Q Consensus 184 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~ 218 (308)
+.. +..+ ...++.....+|++++|+|+.
T Consensus 98 ga~~g~gL-------g~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGL-------GNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHH-------HHHHHHHHHHCCEEEEEEeCC
Confidence 432 2332 233444445567799999984
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-12 Score=111.18 Aligned_cols=168 Identities=20% Similarity=0.200 Sum_probs=99.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceE--EEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQ--CINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~--~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
+|+|+|.+|+||||++|.|++.+...........|. ......+++ .+.++||||+.+.....+ .....+.+....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~--~~~~~i~~~l~~ 79 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDE--EIIREIKRCLSL 79 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHH--HHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHH--HHHHHHHHHHHh
Confidence 799999999999999999999764222211122222 223334555 799999999865433222 011223332334
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCCchhhHH-----HHHHHHHhh
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKRPEENLN-----DFQELIQGF 273 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~ 273 (308)
...+.+++++|+... ..+..+....+++.. .-.-++||++.+|...... ..+.++ .+.+.++..
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~-----~~~~l~~~~~~~l~~li~~c 153 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDS-----LEDYLKKESNEALQELIEKC 153 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT-----HHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccccc-----HHHHHhccCchhHhHHhhhc
Confidence 566788899999998 566666554544432 3456899999999776442 222232 123333322
Q ss_pred hcCCCCEEEeecC------CCCCHHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSV------TNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 274 ~~~~~~~~~vSA~------~g~gi~el~~~i~~~~~~~ 305 (308)
.-.++.++.+ ....+.+|++.|.+++.+.
T Consensus 154 ---~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 154 ---GGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp ---TTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---CCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 3467777666 3467889999998887764
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.6e-13 Score=121.59 Aligned_cols=152 Identities=18% Similarity=0.233 Sum_probs=99.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCc-----------------------ceec------cCCCCceEEEEEEEe--CC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKK-----------------------LALT------SKTPGKTQCINHFRI--ND 171 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~-----------------------~~~~------~~~~~~t~~~~~~~~--~~ 171 (308)
+...+++++|...+|||||+.+|+..-. .+.+ ....|.|.+.....+ +.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 3445899999999999999999986310 0111 112366666544443 33
Q ss_pred -CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-------ChhHHHHHHHhccCC-CCEEEE
Q 021750 172 -SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-------KPIDLEYASWLGQNQ-IPMTLV 242 (308)
Q Consensus 172 -~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~-------~~~~~~l~~~~~~~~-~pvivV 242 (308)
.++++|+||+.+ |.+..+..+..+|+.++|+|+..+. ..+..+..-+....+ ..+||+
T Consensus 85 ~~~tIiDaPGHrd-------------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVa 151 (428)
T COG5256 85 YNFTIIDAPGHRD-------------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVA 151 (428)
T ss_pred ceEEEeeCCchHH-------------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEE
Confidence 699999999642 7777777888889999999998762 223333222333233 457899
Q ss_pred eecCCCCCcccCCCCCchhhHHHHHHHHHh---hhc---CCCCEEEeecCCCCCHHHH
Q 021750 243 FTKCDKRKKKKNGGKRPEENLNDFQELIQG---FFQ---TAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 243 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~vSA~~g~gi~el 294 (308)
+||+|+.+-. ++..+++...+.. .++ ...+|++|||..|+|+.+.
T Consensus 152 vNKMD~v~wd-------e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 152 VNKMDLVSWD-------EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred EEcccccccC-------HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 9999999743 2333333333322 222 2478999999999998653
|
|
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-13 Score=106.74 Aligned_cols=154 Identities=15% Similarity=0.159 Sum_probs=107.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC--CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND--SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
....+|+++|-.|+|||||+..|.+.+. ...+++.|. ....+.+++ ++.+||..|.. .++..|..
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GF--n~k~v~~~g~f~LnvwDiGGqr----------~IRpyWsN 81 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGF--NTKKVEYDGTFHLNVWDIGGQR----------GIRPYWSN 81 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCc--ceEEEeecCcEEEEEEecCCcc----------ccchhhhh
Confidence 4456999999999999999999988742 334444443 344455555 78999999953 45568999
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhH--HHHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh--h
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPID--LEYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG--F 273 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~--~~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~ 273 (308)
||.+.+. ++||+|+++.-.+.+ .++.+++. ....|+.|-.||-|+.-... .++....++- .
T Consensus 82 Yyenvd~---lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~---------~eeia~klnl~~l 149 (185)
T KOG0074|consen 82 YYENVDG---LIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK---------VEEIALKLNLAGL 149 (185)
T ss_pred hhhccce---EEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc---------hHHHHHhcchhhh
Confidence 9988766 899999776543333 24444444 36799999999999885443 2222222211 0
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
-...+.+-+|||.+++|+.+-.+|++.-
T Consensus 150 rdRswhIq~csals~eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 150 RDRSWHIQECSALSLEGSTDGSDWVQSN 177 (185)
T ss_pred hhceEEeeeCccccccCccCcchhhhcC
Confidence 1123678899999999999988888754
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-12 Score=125.57 Aligned_cols=195 Identities=14% Similarity=0.134 Sum_probs=119.6
Q ss_pred CCCCCCchHHHHhhcCeEEcCCCCCcCCCchhhHHHHhCCCeEEEeecccchhhhhHHHhhcccCCCC------CCCCCC
Q 021750 52 HAVEPEPEPHVAISLEKLFVPPETEVSIDDSSLSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTED------CPSDGL 125 (308)
Q Consensus 52 ~~~~~~~~~~~~~~~~~i~v~~gt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~------~~~~~~ 125 (308)
+.+..++.+.++....+++...-+.+...++.+++..+++-.++ .++... ....|......+.+ .+-.-.
T Consensus 43 ~~~~~~~~~k~~~~rvkflrl~~Rlg~s~~~~vvaqVlyrl~l~--~~~~~~--~~~s~d~a~~~a~~~ea~g~~~Ldfs 118 (763)
T TIGR00993 43 SEEHKEKLEKLQLIRVKFLRLAQRLGQTPENSIAAQVLYRLGLL--AGRQGG--GAFSLDAAKAMAEQLEAEGQDPLDFS 118 (763)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHh--hccCcc--ccccchhhHHHHhhhhhhhccccCcc
Confidence 66778889999999989888888999998888889999886653 333322 11122211111111 111223
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEE-EEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH-FRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
.+|+|+|.+||||||++|+|++.+........+++|..... ...++ .+.++||||+.+....+.....+......++.
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Ls 198 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIK 198 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHh
Confidence 48999999999999999999997643333334566654322 23344 79999999998754332222232223333333
Q ss_pred hcCCccEEEEEEeCCCCCC-hhHHHHHHHhc-----cCCCCEEEEeecCCCCCc
Q 021750 204 NRSTLVSVFLLIDASIPAK-PIDLEYASWLG-----QNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~-~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~ 251 (308)
....++|+||+..+.... ..+....+.+. ..-.-+|||+|.+|....
T Consensus 199 -k~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 199 -KNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred -cCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 335677888876653322 23333333332 244678999999998863
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.2e-12 Score=100.34 Aligned_cols=156 Identities=14% Similarity=0.195 Sum_probs=110.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCce-EEEEEEEeCC----CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT-QCINHFRIND----SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t-~~~~~~~~~~----~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
-||+++|.-+||||+++..|+..+........|... .....++.++ .+.+.||.|+... .++ +-++
T Consensus 10 ~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~--~~e-------Lprh 80 (198)
T KOG3883|consen 10 CKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG--QQE-------LPRH 80 (198)
T ss_pred eEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCc--hhh-------hhHh
Confidence 389999999999999999999876433333333221 1122333322 5899999998643 233 6678
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHH-HHHhc----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEY-ASWLG----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l-~~~~~----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
|+...++ .++|++..++.+++..++ ..|+. ...+|+++++||+|+.+..+ +..+..+.|++.-+
T Consensus 81 y~q~aDa---fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~----vd~d~A~~Wa~rEk---- 149 (198)
T KOG3883|consen 81 YFQFADA---FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE----VDMDVAQIWAKREK---- 149 (198)
T ss_pred HhccCce---EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchh----cCHHHHHHHHhhhh----
Confidence 8776665 789999998888776543 33444 36789999999999976544 34455555655543
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+..++++|.+...+-|.|.++...+.
T Consensus 150 --vkl~eVta~dR~sL~epf~~l~~rl~ 175 (198)
T KOG3883|consen 150 --VKLWEVTAMDRPSLYEPFTYLASRLH 175 (198)
T ss_pred --eeEEEEEeccchhhhhHHHHHHHhcc
Confidence 78999999999999999999887553
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-12 Score=129.24 Aligned_cols=108 Identities=17% Similarity=0.168 Sum_probs=72.8
Q ss_pred EcCCCCCHHHHHHHHhcCCcc----e------eccC------CCCceEE--EEEEEeCC-CEEEecCCCcccCCCchhhh
Q 021750 131 VGRSNVGKSSLLNSLVRRKKL----A------LTSK------TPGKTQC--INHFRIND-SWYLVDLPGYGYAAAPRELR 191 (308)
Q Consensus 131 vG~~~vGKSSLin~l~~~~~~----~------~~~~------~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~~~~~~ 191 (308)
+|.+|+|||||+++|+..... . .+.+ ..|.|.. ...+.+++ .+.+|||||..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~-------- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD-------- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH--------
Confidence 699999999999999653210 0 0111 1233333 23445555 799999999642
Q ss_pred hchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 192 TDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
|...+..++. .+|++++|+|++.+.......+...+...++|+++|+||+|+...
T Consensus 73 --~~~~~~~~l~---~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 73 --FTGEVERALR---VLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGA 127 (668)
T ss_pred --HHHHHHHHHH---HhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 2223333333 456699999999887777666666676778999999999998753
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.9e-12 Score=97.84 Aligned_cols=143 Identities=24% Similarity=0.290 Sum_probs=95.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
.|+++||..|+|||||.++|-+... ....+. -++++++ ..+||||--..+ +......+...
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~--lykKTQ-------Ave~~d~-~~IDTPGEy~~~---------~~~Y~aL~tt~ 62 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQ-------AVEFNDK-GDIDTPGEYFEH---------PRWYHALITTL 62 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchh--hhcccc-------eeeccCc-cccCCchhhhhh---------hHHHHHHHHHh
Confidence 4899999999999999999998742 122221 2223222 248999943211 11222233445
Q ss_pred CCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeec
Q 021750 206 STLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSS 285 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA 285 (308)
+.++++++|-.++++.+...-. +..-..+|+|-|++|.|+.+.. ++....+.+.+.. ..++|.+|+
T Consensus 63 ~dadvi~~v~~and~~s~f~p~---f~~~~~k~vIgvVTK~DLaed~---------dI~~~~~~L~eaG--a~~IF~~s~ 128 (148)
T COG4917 63 QDADVIIYVHAANDPESRFPPG---FLDIGVKKVIGVVTKADLAEDA---------DISLVKRWLREAG--AEPIFETSA 128 (148)
T ss_pred hccceeeeeecccCccccCCcc---cccccccceEEEEecccccchH---------hHHHHHHHHHHcC--CcceEEEec
Confidence 6678899999988876654432 2223457799999999998532 3555555554432 378999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 021750 286 VTNQGRDEILLHMAQL 301 (308)
Q Consensus 286 ~~g~gi~el~~~i~~~ 301 (308)
.++.|++++++++...
T Consensus 129 ~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 129 VDNQGVEELVDYLASL 144 (148)
T ss_pred cCcccHHHHHHHHHhh
Confidence 9999999999998753
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-11 Score=106.62 Aligned_cols=126 Identities=24% Similarity=0.352 Sum_probs=85.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcce----eccCCCC----------------------------------------
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLA----LTSKTPG---------------------------------------- 159 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~----~~~~~~~---------------------------------------- 159 (308)
..|.|+++|..|+||||+++++++..+.+ ..+..|.
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 45689999999999999999999864211 1111110
Q ss_pred -----ceEEEEEEEeC----CCEEEecCCCcccC---CCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhH-H
Q 021750 160 -----KTQCINHFRIN----DSWYLVDLPGYGYA---AAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPID-L 226 (308)
Q Consensus 160 -----~t~~~~~~~~~----~~~~liDtpG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~-~ 226 (308)
...+...+.+. -.++++||||+... .....+...+..+...|+...+. ++++|+|+.......+ .
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~--IIL~Vvda~~d~~~~d~l 182 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEEC--LILAVTPANVDLANSDAL 182 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccC--eEEEEEECCCCCCchhHH
Confidence 00000111121 16899999999642 11233444667788888776554 4899999987766655 5
Q ss_pred HHHHHhccCCCCEEEEeecCCCCCc
Q 021750 227 EYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 227 ~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
++.+++...++|+++|+||+|..+.
T Consensus 183 ~ia~~ld~~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 183 KLAKEVDPQGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHHHcCCcEEEEEECCCCCCc
Confidence 8888888889999999999999864
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=113.73 Aligned_cols=84 Identities=24% Similarity=0.295 Sum_probs=61.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC------------------CEEEecCCCcccCC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND------------------SWYLVDLPGYGYAA 185 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~------------------~~~liDtpG~~~~~ 185 (308)
.+|+|||.||||||||+|+|++.+ +.+...|++|.... .+.+.+ ++.++|+||+..+.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~--~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 489999999999999999999976 56777888886532 233222 48999999998643
Q ss_pred -CchhhhhchHHHHHHHHHhcCCccEEEEEEeCC
Q 021750 186 -APRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS 218 (308)
Q Consensus 186 -~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~ 218 (308)
.+.+ +...++.....+|++++|+|+.
T Consensus 81 ~~g~g-------lg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEG-------LGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ChHHH-------HHHHHHHHHHhCCEEEEEEeCC
Confidence 2223 3344555555677899999985
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.6e-12 Score=114.55 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=66.8
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
.++++||+|++.... . + ...+|+++++++...+...+... ...+ ...-++|+||+|+...
T Consensus 150 d~viieT~Gv~qs~~----------~----i--~~~aD~vlvv~~p~~gd~iq~~k-~gi~---E~aDIiVVNKaDl~~~ 209 (332)
T PRK09435 150 DVILVETVGVGQSET----------A----V--AGMVDFFLLLQLPGAGDELQGIK-KGIM---ELADLIVINKADGDNK 209 (332)
T ss_pred CEEEEECCCCccchh----------H----H--HHhCCEEEEEecCCchHHHHHHH-hhhh---hhhheEEeehhcccch
Confidence 689999999873110 1 1 12356688887754443332211 1111 2334899999998864
Q ss_pred ccCCCCCchhhHHHHHHHHHhhh----cCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 252 KKNGGKRPEENLNDFQELIQGFF----QTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.. ......++.+.+.... .+..|++.+||++|.|+++|++.|.+.+..+
T Consensus 210 ~~-----a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 210 TA-----ARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred hH-----HHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 32 2233344444443211 1337899999999999999999999987654
|
|
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.8e-12 Score=108.68 Aligned_cols=157 Identities=20% Similarity=0.235 Sum_probs=104.1
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCce--EEEEEEEeCC-CEEEecCCCcccC-CCchhhhhchHH
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT--QCINHFRIND-SWYLVDLPGYGYA-AAPRELRTDWDK 196 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t--~~~~~~~~~~-~~~liDtpG~~~~-~~~~~~~~~~~~ 196 (308)
...|..+|+++|.|.||||||+..++.... .......+| .....+.+++ .+.++|.||++++ +.+.+.+
T Consensus 58 ~KsGdaRValIGfPSVGKStlLs~iT~T~S--eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRG----- 130 (364)
T KOG1486|consen 58 LKSGDARVALIGFPSVGKSTLLSKITSTHS--EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRG----- 130 (364)
T ss_pred eccCCeEEEEecCCCccHHHHHHHhhcchh--hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCC-----
Confidence 456677999999999999999999998542 222233333 3345677777 8999999999885 3344422
Q ss_pred HHHHHHHhcCCccEEEEEEeCCCCCChhH---HHH----------------------------------------HHHhc
Q 021750 197 FTKDYFLNRSTLVSVFLLIDASIPAKPID---LEY----------------------------------------ASWLG 233 (308)
Q Consensus 197 ~~~~~~~~~~~~~~vl~viD~~~~~~~~~---~~l----------------------------------------~~~~~ 233 (308)
++.+..+..+|++++|+|++....... .++ ...+.
T Consensus 131 --RQviavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILh 208 (364)
T KOG1486|consen 131 --RQVIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILH 208 (364)
T ss_pred --ceEEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHH
Confidence 233455666788999999975431110 000 00000
Q ss_pred ---------------------------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecC
Q 021750 234 ---------------------------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSV 286 (308)
Q Consensus 234 ---------------------------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~ 286 (308)
...++++.|.||+|... ++++-+..+ .+.-+-+|+.
T Consensus 209 eykI~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs------------~eevdrlAr-----~PnsvViSC~ 271 (364)
T KOG1486|consen 209 EYKIHNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVS------------IEEVDRLAR-----QPNSVVISCN 271 (364)
T ss_pred HHeeccceEEEecCCChHHHHHHHhccceEEEEEEEeeccceec------------HHHHHHHhc-----CCCcEEEEec
Confidence 03467889999999874 333322222 2567889999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 021750 287 TNQGRDEILLHMAQLRN 303 (308)
Q Consensus 287 ~g~gi~el~~~i~~~~~ 303 (308)
.+.|++.+++.|++.+.
T Consensus 272 m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 272 MKLNLDRLLERIWEELN 288 (364)
T ss_pred cccCHHHHHHHHHHHhc
Confidence 99999999999988764
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-12 Score=114.05 Aligned_cols=161 Identities=19% Similarity=0.269 Sum_probs=110.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCc----------cee---cc-----CCCCceE------------EEEEEEeCCC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKK----------LAL---TS-----KTPGKTQ------------CINHFRINDS 172 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~----------~~~---~~-----~~~~~t~------------~~~~~~~~~~ 172 (308)
+...+|+.+|.-.-|||||..+|++--- +.+ +. ..+.+.. .-...++-++
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 3456999999999999999999998310 000 00 0000000 0000012235
Q ss_pred EEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC----ChhHHHHHHHhccCCCCEEEEeecCCC
Q 021750 173 WYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA----KPIDLEYASWLGQNQIPMTLVFTKCDK 248 (308)
Q Consensus 173 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~----~~~~~~l~~~~~~~~~pvivV~NK~Dl 248 (308)
+.++|.||+. -++...+..+..+|+.++|++++.+. +..++..++.+. -+.++||-||+|+
T Consensus 88 VSfVDaPGHe-------------~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDl 152 (415)
T COG5257 88 VSFVDAPGHE-------------TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDL 152 (415)
T ss_pred EEEeeCCchH-------------HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccce
Confidence 7899999953 15555667777788999999998653 333333333443 3678999999999
Q ss_pred CCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 249 RKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
...++ ..++.++++++++.......|++++||..+.|||-|+++|.+.+.
T Consensus 153 V~~E~-----AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 153 VSRER-----ALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred ecHHH-----HHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 97654 566677777777766677899999999999999999999988753
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-11 Score=110.49 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+||||||++|+|++.+. ..++...+.+... .....++ ++.+|||||+.+..... .......+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v-~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~---e~~~~~ik 111 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERI-ATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYIN---DQAVNIIK 111 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCc-ccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHH---HHHHHHHH
Confidence 4456999999999999999999998753 4455555443322 2222344 89999999997642211 12334555
Q ss_pred HHHHhcCCccEEEEEEeCCC-CCChhHHHHHHHhcc-----CCCCEEEEeecCCCCCc
Q 021750 200 DYFLNRSTLVSVFLLIDASI-PAKPIDLEYASWLGQ-----NQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~-~~~~~~~~l~~~~~~-----~~~pvivV~NK~Dl~~~ 251 (308)
.|+.. ...|+++||...+. .....+..+.+.+.. ...++|||+|++|....
T Consensus 112 ~~l~~-~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 112 RFLLG-KTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHhhc-CCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 55443 45788899955432 244444444443332 34679999999997743
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=126.49 Aligned_cols=153 Identities=21% Similarity=0.264 Sum_probs=95.6
Q ss_pred CCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe--C-------------------CCEEEecCCCcccCCCchhhhhch
Q 021750 136 VGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI--N-------------------DSWYLVDLPGYGYAAAPRELRTDW 194 (308)
Q Consensus 136 vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-------------------~~~~liDtpG~~~~~~~~~~~~~~ 194 (308)
++||||+.+|.+... .....-|.|+.+..+.+ + ..+.+|||||+. .|
T Consensus 472 ~~KTtLLD~iR~t~v--~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe----------~F 539 (1049)
T PRK14845 472 VHNTTLLDKIRKTRV--AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHE----------AF 539 (1049)
T ss_pred cccccHHHHHhCCCc--ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcH----------HH
Confidence 349999999998642 22333455554432221 1 038999999953 33
Q ss_pred HHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCC--C-------CchhhHHH
Q 021750 195 DKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGG--K-------RPEENLND 265 (308)
Q Consensus 195 ~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~--~-------~~~~~~~~ 265 (308)
..+.. .....+|++++|+|++++...+..+...++...++|+++|+||+|+........ . ..+...++
T Consensus 540 ~~lr~---~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~e 616 (1049)
T PRK14845 540 TSLRK---RGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTE 616 (1049)
T ss_pred HHHHH---hhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHH
Confidence 22322 233456789999999987777776667777777899999999999964211000 0 00111222
Q ss_pred HHHH-------HHh------------hhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 266 FQEL-------IQG------------FFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 266 ~~~~-------~~~------------~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+... +.+ .+....+++++||++|+|+++|+.+|..+..
T Consensus 617 l~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 617 LEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 2111 111 1234579999999999999999998876544
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=110.47 Aligned_cols=159 Identities=16% Similarity=0.195 Sum_probs=105.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCccee-----ccCCCCceEEEE--EEEe--------CC--CEEEecCCCcccCCCch
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLAL-----TSKTPGKTQCIN--HFRI--------ND--SWYLVDLPGYGYAAAPR 188 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~-----~~~~~~~t~~~~--~~~~--------~~--~~~liDtpG~~~~~~~~ 188 (308)
++++++|.-.+|||||..+|..-...+. .+...|.|.+.. .+.. .. ++.++|+||..
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa------ 81 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA------ 81 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH------
Confidence 6899999999999999999986321111 122234444432 1111 11 57999999953
Q ss_pred hhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHH
Q 021750 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQE 268 (308)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 268 (308)
.+.+..+..+..+|+.++|+|+..+...+..+.+-+-...-+..+||+||+|+..+.+ ....+++..+
T Consensus 82 -------sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~q-----r~ski~k~~k 149 (522)
T KOG0461|consen 82 -------SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQ-----RASKIEKSAK 149 (522)
T ss_pred -------HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchh-----hhhHHHHHHH
Confidence 2667777788888999999999987665554433333334567888999999876543 2333444444
Q ss_pred HHHhh-----hcCCCCEEEeecCCC----CCHHHHHHHHHHHH
Q 021750 269 LIQGF-----FQTAPPWIMTSSVTN----QGRDEILLHMAQLR 302 (308)
Q Consensus 269 ~~~~~-----~~~~~~~~~vSA~~g----~gi~el~~~i~~~~ 302 (308)
.+++. |....|++++||+.| +++.||.+.|...+
T Consensus 150 k~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 150 KVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred HHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 44432 444589999999999 67777776666544
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-12 Score=121.49 Aligned_cols=156 Identities=17% Similarity=0.165 Sum_probs=98.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCC-ceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPG-KTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~-~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
..+|+++|..||||||||-+|+..++...+-+... ++. ...+.-+. ...++||+--. +. +..+++
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~I-PadvtPe~vpt~ivD~ss~~-----~~-----~~~l~~-- 75 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILI-PADVTPENVPTSIVDTSSDS-----DD-----RLCLRK-- 75 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhccccccccCCcccc-CCccCcCcCceEEEeccccc-----ch-----hHHHHH--
Confidence 45999999999999999999999877544333221 111 11111122 47899996321 11 012223
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhcc--------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ--------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~--------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
+...+++++++++.+++.+..... ..|+.. .++|+|+|+||+|.......+ .+..+..+...+.
T Consensus 76 -EirkA~vi~lvyavd~~~T~D~is-t~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s---~e~~~~pim~~f~--- 147 (625)
T KOG1707|consen 76 -EIRKADVICLVYAVDDESTVDRIS-TKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNS---DEVNTLPIMIAFA--- 147 (625)
T ss_pred -HHhhcCEEEEEEecCChHHhhhhh-hhhhhhhhcccCCCccCCEEEEeeccCCccccccc---hhHHHHHHHHHhH---
Confidence 233455688888888765554432 445532 579999999999998765421 1112333443333
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
....+|+|||++-.++.|+|.+..+.+
T Consensus 148 -EiEtciecSA~~~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 148 -EIETCIECSALTLANVSELFYYAQKAV 174 (625)
T ss_pred -HHHHHHhhhhhhhhhhHhhhhhhhhee
Confidence 336799999999999999999877643
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-12 Score=108.14 Aligned_cols=112 Identities=26% Similarity=0.376 Sum_probs=60.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe----CCCEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI----NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
+.|.|+|++|+|||+|...|..+.....++... . .. .+.. ...+.++|+||+.+ ++..+..+
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e--~-n~-~~~~~~~~~~~~~lvD~PGH~r----------lr~~~~~~ 69 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSME--N-NI-AYNVNNSKGKKLRLVDIPGHPR----------LRSKLLDE 69 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---SS--E-EE-ECCGSSTCGTCECEEEETT-HC----------CCHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeecccc--C-Cc-eEEeecCCCCEEEEEECCCcHH----------HHHHHHHh
Confidence 479999999999999999999985433322221 1 11 1222 23799999999753 11112222
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHh---------ccCCCCEEEEeecCCCCCcc
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWL---------GQNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~---------~~~~~pvivV~NK~Dl~~~~ 252 (308)
+.....+.+|+||+|++...... .+..+++ .....|++|++||.|+....
T Consensus 70 ~~~~~~~k~IIfvvDSs~~~~~~-~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 70 LKYLSNAKGIIFVVDSSTDQKEL-RDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp HHHHGGEEEEEEEEETTTHHHHH-HHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred hhchhhCCEEEEEEeCccchhhH-HHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 11223344599999997422111 1112221 13689999999999998654
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-12 Score=117.30 Aligned_cols=169 Identities=19% Similarity=0.126 Sum_probs=91.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCC----cceeccCCCCceEEEEEEEeCC--CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRK----KLALTSKTPGKTQCINHFRIND--SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~----~~~~~~~~~~~t~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
..+|+|+|.+|+|||||||+|.|-. ..+.+. ...+|.....|.... .+++||+||++...- -.
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tG-v~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f----------~~ 103 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTG-VVETTMEPTPYPHPKFPNVTLWDLPGIGTPNF----------PP 103 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SS-SHSCCTS-EEEE-SS-TTEEEEEE--GGGSS------------H
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCC-CCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCC----------CH
Confidence 4599999999999999999997721 111111 123444455555443 799999999864321 11
Q ss_pred HHHHH--hcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCC-Ccc-cCC--CCCchhhHHHHHHHHHh
Q 021750 199 KDYFL--NRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR-KKK-KNG--GKRPEENLNDFQELIQG 272 (308)
Q Consensus 199 ~~~~~--~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~-~~~-~~~--~~~~~~~~~~~~~~~~~ 272 (308)
..|+. ....+|.++++.+ ...+..+..+...+...++|+++|-+|+|.. ... ... ....++.++++++.+.+
T Consensus 104 ~~Yl~~~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~ 181 (376)
T PF05049_consen 104 EEYLKEVKFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLE 181 (376)
T ss_dssp HHHHHHTTGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHH
T ss_pred HHHHHHccccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHH
Confidence 23332 3344565555443 3466777888888888999999999999961 111 000 00122334555444433
Q ss_pred hhc----CCCCEEEeecCCC--CCHHHHHHHHHHHHHHHH
Q 021750 273 FFQ----TAPPWIMTSSVTN--QGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 273 ~~~----~~~~~~~vSA~~g--~gi~el~~~i~~~~~~~~ 306 (308)
.+. ..+++|-+|+.+- .....|.+.|.+-+...+
T Consensus 182 ~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 182 NLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp HHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred HHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 322 3478999999864 457777777776554433
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.4e-12 Score=117.00 Aligned_cols=159 Identities=18% Similarity=0.233 Sum_probs=107.1
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcc-------e------eccCCCCceEEEEE----EEe-CC---CEEEecCC
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKL-------A------LTSKTPGKTQCINH----FRI-ND---SWYLVDLP 179 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~-------~------~~~~~~~~t~~~~~----~~~-~~---~~~liDtp 179 (308)
+...+.+..++-.-.-|||||..+|+..... . ......|.|...+. |.. ++ .+.++|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 3455678999999999999999999863210 0 12233466664332 222 22 47899999
Q ss_pred CcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCc
Q 021750 180 GYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRP 259 (308)
Q Consensus 180 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~ 259 (308)
|+.+.+- +.-+....+.++++|+|++.+...+...-....-+.+.-++-|+||+||+..+
T Consensus 85 GHVDFsY-------------EVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Ad------- 144 (603)
T COG0481 85 GHVDFSY-------------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAAD------- 144 (603)
T ss_pred CccceEE-------------EehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCC-------
Confidence 9865221 11122223344899999999987776544444456788899999999998754
Q ss_pred hhhHHHHHHHHHhhhc-CCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 260 EENLNDFQELIQGFFQ-TAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 260 ~~~~~~~~~~~~~~~~-~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.++..+.+.+.++ .....+.+||++|.||+++++.|.+.+
T Consensus 145 ---pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 145 ---PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred ---HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhC
Confidence 3444444444433 235789999999999999999998764
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.1e-11 Score=104.26 Aligned_cols=124 Identities=19% Similarity=0.225 Sum_probs=77.6
Q ss_pred CEEEecCCCccc----CCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCC---CChhHH--HHHHHhccCCCCEEEE
Q 021750 172 SWYLVDLPGYGY----AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIP---AKPIDL--EYASWLGQNQIPMTLV 242 (308)
Q Consensus 172 ~~~liDtpG~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~---~~~~~~--~l~~~~~~~~~pvivV 242 (308)
+++++||||.++ ...+. ++-+.+... .-.+|+||+|.... .++... ....++-....|+|+|
T Consensus 117 ~~~liDTPGQIE~FtWSAsGs--------IIte~lass-~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivv 187 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSASGS--------IITETLASS-FPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVV 187 (366)
T ss_pred CEEEEcCCCceEEEEecCCcc--------chHhhHhhc-CCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEE
Confidence 589999999875 23332 222222222 22358999998643 233221 1122333578999999
Q ss_pred eecCCCCCcccCCCCCchhhHHHHHHHHHh------------------hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 243 FTKCDKRKKKKNGGKRPEENLNDFQELIQG------------------FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 243 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+||+|+.+..-.. ....+.+.|++.+++ .|......+.|||.+|+|.+++|..+.+.+++
T Consensus 188 fNK~Dv~d~~fa~--eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 188 FNKTDVSDSEFAL--EWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred EecccccccHHHH--HHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 9999998754200 012223344444432 23345789999999999999999999998887
Q ss_pred HH
Q 021750 305 WL 306 (308)
Q Consensus 305 ~~ 306 (308)
+.
T Consensus 266 y~ 267 (366)
T KOG1532|consen 266 YE 267 (366)
T ss_pred HH
Confidence 65
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.1e-12 Score=111.24 Aligned_cols=82 Identities=23% Similarity=0.288 Sum_probs=58.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC------------------CEEEecCCCcccCC-C
Q 021750 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND------------------SWYLVDLPGYGYAA-A 186 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~------------------~~~liDtpG~~~~~-~ 186 (308)
|+|+|.||||||||+|+|++.+ ..+...|++|.... .+.+.+ .+.++|+||+..+. .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~--~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCC--CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 5899999999999999999976 35677788876532 233322 38999999998643 2
Q ss_pred chhhhhchHHHHHHHHHhcCCccEEEEEEeCC
Q 021750 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS 218 (308)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~ 218 (308)
+.+ +...++.....+|++++|+|+.
T Consensus 79 ~~g-------lg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 79 GEG-------LGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hhH-------HHHHHHHHHHhCCEEEEEEeCc
Confidence 333 3334444555667899999974
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-11 Score=101.76 Aligned_cols=161 Identities=21% Similarity=0.293 Sum_probs=97.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
..|.++|..++|||+|.-.|..+.... .++..|. ...+.++. ...++|.||.. +.+.-+.+|+.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn----~a~~r~gs~~~~LVD~PGH~----------rlR~kl~e~~~ 104 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPN----EATYRLGSENVTLVDLPGHS----------RLRRKLLEYLK 104 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeeeccc----eeeEeecCcceEEEeCCCcH----------HHHHHHHHHcc
Confidence 479999999999999999998864322 2222222 22333333 67999999964 34445556666
Q ss_pred hcCCccEEEEEEeCCCCCChhHH--H-HHHHh-----ccCCCCEEEEeecCCCCCcccCCC--CCchhhHHHHHHHHH--
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL--E-YASWL-----GQNQIPMTLVFTKCDKRKKKKNGG--KRPEENLNDFQELIQ-- 271 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~--~-l~~~~-----~~~~~pvivV~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~-- 271 (308)
....+..++||+|+......... + +...+ .....|++|++||.|+.-...... ...+.++..+.+.-.
T Consensus 105 ~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~ 184 (238)
T KOG0090|consen 105 HNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSAL 184 (238)
T ss_pred ccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 54455569999999865443221 1 11111 136789999999999976542100 001111222221111
Q ss_pred -h----------------------hhc-CCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 272 -G----------------------FFQ-TAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 272 -~----------------------~~~-~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
. ... ..+.+.++|++++ +++++-+||.+.
T Consensus 185 ~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 185 RSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred hccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 0 000 1256888999998 899999999875
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-11 Score=104.26 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=51.5
Q ss_pred EEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCC
Q 021750 211 VFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQG 290 (308)
Q Consensus 211 vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~g 290 (308)
.+.|+|......... ........|.++++||+|+.+.. .....++.+.+++.. ...+++++||++|+|
T Consensus 127 ~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~~~-------~~~~~~~~~~l~~~~-~~~~i~~~Sa~~g~g 194 (207)
T TIGR00073 127 RVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAEAV-------GFDVEKMKADAKKIN-PEAEIILMSLKTGEG 194 (207)
T ss_pred EEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHccccc-------hhhHHHHHHHHHHhC-CCCCEEEEECCCCCC
Confidence 345677665433221 11122357889999999997532 112334444444332 347899999999999
Q ss_pred HHHHHHHHHHHH
Q 021750 291 RDEILLHMAQLR 302 (308)
Q Consensus 291 i~el~~~i~~~~ 302 (308)
++++++++.+..
T Consensus 195 v~~l~~~i~~~~ 206 (207)
T TIGR00073 195 LDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.1e-11 Score=123.82 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=81.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcc-e-------eccC------CCCceEEE--EEEEeC----------------
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKL-A-------LTSK------TPGKTQCI--NHFRIN---------------- 170 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~-~-------~~~~------~~~~t~~~--~~~~~~---------------- 170 (308)
..+.+|+|+|..++|||||+++|+..... . .+.+ ..|.|... ..+.+.
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 45679999999999999999999864321 0 0000 11223221 112221
Q ss_pred C-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCC
Q 021750 171 D-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249 (308)
Q Consensus 171 ~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~ 249 (308)
+ .+.++||||+.+ |..+.......+|++++|+|+..+...+...+.+++...++|+++++||+|+.
T Consensus 97 ~~~inliDtPGh~d-------------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVD-------------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHH-------------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 2 578999999742 55555666677788999999999988777777888888899999999999987
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.6e-11 Score=110.40 Aligned_cols=156 Identities=19% Similarity=0.208 Sum_probs=117.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCc-ceeccCCCCceEEEEEEEeC---CCEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKK-LALTSKTPGKTQCINHFRIN---DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~-~~~~~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
-|+..|.---|||||+.++.+..- ...-...-|+|.+...+..+ +.+.++|.||+. ++.+..+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~-------------~~i~~mi 68 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHP-------------DFISNLL 68 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcH-------------HHHHHHH
Confidence 378889999999999999998531 11223455888887665542 379999999964 2777777
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCE-EEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPM-TLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pv-ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
.....+|.+++|+|++++...+..+.+..+...+++- ++|+||+|+.+... .++.++++...+. -...++|
T Consensus 69 ag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r-----~e~~i~~Il~~l~---l~~~~i~ 140 (447)
T COG3276 69 AGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEAR-----IEQKIKQILADLS---LANAKIF 140 (447)
T ss_pred hhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHH-----HHHHHHHHHhhcc---ccccccc
Confidence 7888889999999999888888777777777666665 99999999986432 2333333333333 1347889
Q ss_pred EeecCCCCCHHHHHHHHHHHHH
Q 021750 282 MTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.+|+.+|+||++|.+.|.++.+
T Consensus 141 ~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 141 KTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred ccccccCCCHHHHHHHHHHhhh
Confidence 9999999999999999999984
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.5e-11 Score=122.44 Aligned_cols=113 Identities=20% Similarity=0.212 Sum_probs=80.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCC---------------CCceEEE--EEEEeC----------C-CEE
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKT---------------PGKTQCI--NHFRIN----------D-SWY 174 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~---------------~~~t~~~--~~~~~~----------~-~~~ 174 (308)
+.+.+|+++|..++|||||+++|+..... ..... .|.|... ..+.+. + .+.
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~-i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGI-ISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCC-cccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 44569999999999999999999974211 11111 1223221 122222 2 489
Q ss_pred EecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCC
Q 021750 175 LVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249 (308)
Q Consensus 175 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~ 249 (308)
++||||+.+ +..+.......+|++++|+|+..+...+...+.+.+...++|+++++||+|+.
T Consensus 96 liDtPG~~~-------------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVD-------------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHh-------------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 999999753 44445556667788999999999888877777888877889999999999987
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-11 Score=109.43 Aligned_cols=153 Identities=18% Similarity=0.149 Sum_probs=100.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcce---------ec----------------------cCCCCceEEEEEEEe---
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLA---------LT----------------------SKTPGKTQCINHFRI--- 169 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~---------~~----------------------~~~~~~t~~~~~~~~--- 169 (308)
...+++-+|...-||||||-+|+...+.- .. ....|.|.++....+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 45689999999999999999998753210 01 112366776533222
Q ss_pred CCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCC-CCEEEEeecCCC
Q 021750 170 NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ-IPMTLVFTKCDK 248 (308)
Q Consensus 170 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~-~pvivV~NK~Dl 248 (308)
.++|++.||||+. + +++.....+..+++.++++|+..+...+.....-+....+ +-+++.+||+||
T Consensus 85 KRkFIiADTPGHe----------Q---YTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDL 151 (431)
T COG2895 85 KRKFIIADTPGHE----------Q---YTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDL 151 (431)
T ss_pred cceEEEecCCcHH----------H---HhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecc
Confidence 3489999999953 1 5666666777788999999998876655543222222233 457889999999
Q ss_pred CCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHH
Q 021750 249 RKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRD 292 (308)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~ 292 (308)
.+..+.. .++...++.....+..-....++++||+.|+|+-
T Consensus 152 vdy~e~~---F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 152 VDYSEEV---FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred cccCHHH---HHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 9864321 2222333333333332344689999999999974
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.9e-11 Score=121.54 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=75.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcc-e-------eccC------CCCceEEE--EEE--EeC---CCEEEecCCCc
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKL-A-------LTSK------TPGKTQCI--NHF--RIN---DSWYLVDLPGY 181 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~-~-------~~~~------~~~~t~~~--~~~--~~~---~~~~liDtpG~ 181 (308)
..+.+|+++|..++|||||+.+|+..... . .+.+ ..|.|... ..+ .++ ..+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 35669999999999999999999863211 0 0000 01222221 112 222 26889999997
Q ss_pred ccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 182 GYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
.+ +..........+|++++|+|+..+...+...+.......+.|.|+++||+|+..
T Consensus 98 ~d-------------f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VD-------------FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLI 153 (731)
T ss_pred cC-------------hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhc
Confidence 53 222333344455779999999988777666666665556789999999999864
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.4e-11 Score=108.29 Aligned_cols=151 Identities=15% Similarity=0.176 Sum_probs=90.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCC---cce-----------eccCCCC---ceEEEEE-------EEeC----CCEE
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRK---KLA-----------LTSKTPG---KTQCINH-------FRIN----DSWY 174 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~---~~~-----------~~~~~~~---~t~~~~~-------~~~~----~~~~ 174 (308)
.|..-|+++|+.|+|||||||+|.+.- .++ .++..+| +|.+... +... +++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 567789999999999999999999861 112 4556667 5544332 2223 4799
Q ss_pred EecCCCcccCCC-chhhhhc--------------hHH----HHHHHHHhcCCccEEEEEE-eCC------CCCChhHHHH
Q 021750 175 LVDLPGYGYAAA-PRELRTD--------------WDK----FTKDYFLNRSTLVSVFLLI-DAS------IPAKPIDLEY 228 (308)
Q Consensus 175 liDtpG~~~~~~-~~~~~~~--------------~~~----~~~~~~~~~~~~~~vl~vi-D~~------~~~~~~~~~l 228 (308)
++||+|+....+ +.....+ |.. -++..+.. ..++.++|. |.+ ......+.++
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~d--hstIgivVtTDgsi~dI~Re~y~~aEe~~ 172 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQE--HSTIGVVVTTDGTITDIPREDYVEAEERV 172 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHh--cCcEEEEEEcCCCccccccccchHHHHHH
Confidence 999999965322 2211111 000 02333332 234456666 885 2334445567
Q ss_pred HHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCC
Q 021750 229 ASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVT 287 (308)
Q Consensus 229 ~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~ 287 (308)
...+.+.++|+++|+||+|-.... ...+.+.+.+.+ ..+++.+|+..
T Consensus 173 i~eLk~~~kPfiivlN~~dp~~~e----------t~~l~~~l~eky--~vpvl~v~c~~ 219 (492)
T TIGR02836 173 IEELKELNKPFIILLNSTHPYHPE----------TEALRQELEEKY--DVPVLAMDVES 219 (492)
T ss_pred HHHHHhcCCCEEEEEECcCCCCch----------hHHHHHHHHHHh--CCceEEEEHHH
Confidence 777888899999999999943211 122222333222 26788888754
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-11 Score=98.64 Aligned_cols=155 Identities=23% Similarity=0.231 Sum_probs=104.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHh
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 204 (308)
-|++++|-.|+|||||++.|-... .....|+-..| ...+.+++ .++.+|..|.. .-+..++.|+..
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDr-l~qhvPTlHPT--SE~l~Ig~m~ftt~DLGGH~----------qArr~wkdyf~~ 87 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPT--SEELSIGGMTFTTFDLGGHL----------QARRVWKDYFPQ 87 (193)
T ss_pred ceEEEEeecCCchhhHHHHHcccc-ccccCCCcCCC--hHHheecCceEEEEccccHH----------HHHHHHHHHHhh
Confidence 389999999999999999997753 34444443332 23445555 79999999964 334588888887
Q ss_pred cCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc----
Q 021750 205 RSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ---- 275 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 275 (308)
+++ +++++|+.+.....+. ++...+. ....|+++.+||+|.+... .++++.......+....
T Consensus 88 v~~---iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~------se~~l~~~l~l~~~t~~~~~v 158 (193)
T KOG0077|consen 88 VDA---IVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA------SEDELRFHLGLSNFTTGKGKV 158 (193)
T ss_pred hce---eEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc------cHHHHHHHHHHHHHhcccccc
Confidence 766 8999999876554432 2222222 2689999999999998754 33334333333322111
Q ss_pred -------CCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 276 -------TAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 276 -------~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
....+|.||...+.|.-+.|.|+.+.+
T Consensus 159 ~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 159 NLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred cccCCCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence 124678899999999888888887653
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-10 Score=105.68 Aligned_cols=85 Identities=22% Similarity=0.240 Sum_probs=60.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEE--EE------------eC-------CCEEEecCCCcccC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH--FR------------IN-------DSWYLVDLPGYGYA 184 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~--~~------------~~-------~~~~liDtpG~~~~ 184 (308)
++++|||.||||||||.|+++... +....+|.+|.+.+. .. +. -.+.++|.+|+..+
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~--a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAG--AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCC--ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 589999999999999999999975 445666666654321 11 11 13789999999874
Q ss_pred -CCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCC
Q 021750 185 -AAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASI 219 (308)
Q Consensus 185 -~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~ 219 (308)
+.+.+++.+| +.+.+.+|+++.|+|+..
T Consensus 81 As~GeGLGNkF-------L~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 81 ASKGEGLGNKF-------LDNIREVDAIIHVVRCFG 109 (372)
T ss_pred cccCCCcchHH-------HHhhhhcCeEEEEEEecC
Confidence 6777877653 333445667999999863
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-10 Score=103.47 Aligned_cols=137 Identities=20% Similarity=0.382 Sum_probs=77.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccC--------CCCceEEEEE--EEeCC---CEEEecCCCcccCCCchh---
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSK--------TPGKTQCINH--FRIND---SWYLVDLPGYGYAAAPRE--- 189 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~--------~~~~t~~~~~--~~~~~---~~~liDtpG~~~~~~~~~--- 189 (308)
++|+++|.+|+|||||||.|++......... .......... +..++ .+.++||||++.......
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 6899999999999999999999753222111 1111122222 22233 688999999976433221
Q ss_pred -----hhhchHHHHHHHHH------hcCCccEEEEEEeCC-CCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCC
Q 021750 190 -----LRTDWDKFTKDYFL------NRSTLVSVFLLIDAS-IPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGK 257 (308)
Q Consensus 190 -----~~~~~~~~~~~~~~------~~~~~~~vl~viD~~-~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~ 257 (308)
+..+|...+.+-.. .-..+++|+|+++++ .+.+..|.+.++.+.. ..++|-|+.|+|....
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKaD~lt~------ 157 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKADTLTP------ 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTGGGS-H------
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEecccccCH------
Confidence 11122222211100 012346999999986 4677888777777664 6889999999999853
Q ss_pred CchhhHHHHHHHHHh
Q 021750 258 RPEENLNDFQELIQG 272 (308)
Q Consensus 258 ~~~~~~~~~~~~~~~ 272 (308)
+++..+.+.+..
T Consensus 158 ---~el~~~k~~i~~ 169 (281)
T PF00735_consen 158 ---EELQAFKQRIRE 169 (281)
T ss_dssp ---HHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHH
Confidence 345555555543
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-11 Score=105.72 Aligned_cols=152 Identities=19% Similarity=0.286 Sum_probs=86.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC-----Cccee-----ccCCCCc----------------eEEEEEEE----------
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR-----KKLAL-----TSKTPGK----------------TQCINHFR---------- 168 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~-----~~~~~-----~~~~~~~----------------t~~~~~~~---------- 168 (308)
-..|+|.|.||+|||||+++|... ..++. .++..|- ...+....
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls~ 108 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLSR 108 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHHH
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCccH
Confidence 358999999999999999999762 22221 1222210 00111111
Q ss_pred -----------eCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChh--HHHHHHHhccC
Q 021750 169 -----------INDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPI--DLEYASWLGQN 235 (308)
Q Consensus 169 -----------~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~--~~~l~~~~~~~ 235 (308)
.+..++++.|.|++. . + . .-...+|.+++|+-+..+...+ ...++++
T Consensus 109 ~t~~~v~ll~aaG~D~IiiETVGvGQ-----s---E---~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---- 168 (266)
T PF03308_consen 109 ATRDAVRLLDAAGFDVIIIETVGVGQ-----S---E---V-----DIADMADTVVLVLVPGLGDEIQAIKAGIMEI---- 168 (266)
T ss_dssp HHHHHHHHHHHTT-SEEEEEEESSST-----H---H---H-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH----
T ss_pred hHHHHHHHHHHcCCCEEEEeCCCCCc-----c---H---H-----HHHHhcCeEEEEecCCCccHHHHHhhhhhhh----
Confidence 123578888888652 1 0 1 1123456677887776554433 2233433
Q ss_pred CCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh----hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 236 QIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG----FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 236 ~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.-++|+||+|+... .....++...+.- .-.+.+|++.+||.+++|+++|++.|.+..+...
T Consensus 169 --aDi~vVNKaD~~gA--------~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~ 233 (266)
T PF03308_consen 169 --ADIFVVNKADRPGA--------DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLK 233 (266)
T ss_dssp ---SEEEEE--SHHHH--------HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred --ccEEEEeCCChHHH--------HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 44899999996643 2334444444431 1124579999999999999999999998876544
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-10 Score=94.04 Aligned_cols=60 Identities=42% Similarity=0.583 Sum_probs=51.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCccc
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGY 183 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~ 183 (308)
.+..+++++|.+|||||||+|+|++.+. ..++..+|+|+....+.+++.+.+|||||+.+
T Consensus 81 ~~~~~~~~~G~~~vGKstlin~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 140 (141)
T cd01857 81 KENATIGLVGYPNVGKSSLINALVGKKK-VSVSATPGKTKHFQTIFLTPTITLCDCPGLVF 140 (141)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-eeeCCCCCcccceEEEEeCCCEEEEECCCcCC
Confidence 3444899999999999999999999865 35777889988888888888899999999753
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-11 Score=101.70 Aligned_cols=152 Identities=16% Similarity=0.207 Sum_probs=103.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-C--CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-D--SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++++++|..|.||||++++.+.+++...+..+.|.......+..+ + ++..|||.|... +.....-
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk----------~gglrdg 78 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEK----------KGGLRDG 78 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeeccccee----------ecccccc
Confidence 35799999999999999999999988765566666665544333333 2 688899999532 2123334
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
||..+.+ .++++|..+..+..+. .+|.. ..++|+++++||.|........ +.+.-...
T Consensus 79 yyI~~qc---AiimFdVtsr~t~~n~--~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~------------k~v~~~rk 141 (216)
T KOG0096|consen 79 YYIQGQC---AIIMFDVTSRFTYKNV--PRWHRDLVRVRENIPIVLCGNKVDIKARKVKA------------KPVSFHRK 141 (216)
T ss_pred cEEecce---eEEEeeeeehhhhhcc--hHHHHHHHHHhcCCCeeeeccceecccccccc------------ccceeeec
Confidence 5566655 6889999876655432 22222 2469999999999976543110 11110111
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+.++++||+++.|.+.-|.|+.+.+
T Consensus 142 knl~y~~iSaksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 142 KNLQYYEISAKSNYNFERPFLWLARKL 168 (216)
T ss_pred ccceeEEeecccccccccchHHHhhhh
Confidence 247899999999999999999998765
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.21 E-value=3e-10 Score=103.44 Aligned_cols=64 Identities=22% Similarity=0.177 Sum_probs=41.2
Q ss_pred CCCCEEEEeecCCCCCcccCCCCCchhhHHHHH---HHHHhh-hcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 235 NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQ---ELIQGF-FQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 235 ~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.++|.++|+||+|+..... .......+. ..+... ..+..+++++||++++|+++++++|.+...
T Consensus 171 ~~~~~ivv~NK~Dl~~~~~-----~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 171 MEIADIYVVNKADGEGATN-----VTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred hhhccEEEEEcccccchhH-----HHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 4688999999999985431 000001110 111111 122357999999999999999999998765
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.8e-10 Score=104.00 Aligned_cols=160 Identities=19% Similarity=0.207 Sum_probs=108.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcc--e------------eccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKL--A------------LTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAA 186 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~--~------------~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~ 186 (308)
...+|+|+-...-|||||+..|+..... . ......|.|.-. ..+.+++ ++.++||||+.+...
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 3568999999999999999999974310 0 011233555532 3445555 899999999864322
Q ss_pred chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHH
Q 021750 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDF 266 (308)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~ 266 (308)
..| +-..-+|.|++++|+..+...+.....+-.-..+.+-|+|+||+|.+..+ +++.+++.
T Consensus 84 EVE-------------Rvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Ar------p~~Vvd~v 144 (603)
T COG1217 84 EVE-------------RVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDAR------PDEVVDEV 144 (603)
T ss_pred hhh-------------hhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCC------HHHHHHHH
Confidence 111 22234567999999998877666544454445677788999999999875 56666666
Q ss_pred HHHHHhhhc----CCCCEEEeecCCCC----------CHHHHHHHHHHHH
Q 021750 267 QELIQGFFQ----TAPPWIMTSSVTNQ----------GRDEILLHMAQLR 302 (308)
Q Consensus 267 ~~~~~~~~~----~~~~~~~vSA~~g~----------gi~el~~~i~~~~ 302 (308)
.+.+-.... -..|+++.||+.|. ++..||+.|.+.+
T Consensus 145 fDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 145 FDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred HHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 665543321 24799999999874 6788888887754
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.7e-11 Score=120.10 Aligned_cols=114 Identities=16% Similarity=0.151 Sum_probs=74.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcc--------eeccC------CCCceEEEE------EEEeCC-CEEEecCCCcc
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKL--------ALTSK------TPGKTQCIN------HFRIND-SWYLVDLPGYG 182 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~--------~~~~~------~~~~t~~~~------~~~~~~-~~~liDtpG~~ 182 (308)
...+|+++|..++|||||+++|+..... ....+ ..+.|.... .+..++ ++.++||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 4579999999999999999999752100 00001 123333211 122233 68999999975
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
+ |.......+. .+|++++|+|+..+.......+...+...++|+++++||+|...
T Consensus 98 ~----------f~~~~~~al~---~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 D----------FGGDVTRAMR---AVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLI 152 (720)
T ss_pred c----------cHHHHHHHHH---hcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhccc
Confidence 3 2223333333 44569999999988776666666666567789999999999874
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.6e-13 Score=108.41 Aligned_cols=159 Identities=20% Similarity=0.323 Sum_probs=109.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC----CEEEecCCCcccCCCchhhhhchHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND----SWYLVDLPGYGYAAAPRELRTDWDKF 197 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~liDtpG~~~~~~~~~~~~~~~~~ 197 (308)
+...+++.++|.-|+||||++.+.+...+...+..+.|..+......+++ +..+||..|.. +|..+
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQe----------rfg~m 91 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQE----------RFGNM 91 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhh----------hhcce
Confidence 45568999999999999999999988655434444555554434444444 57889998843 44456
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc----------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHH
Q 021750 198 TKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ----------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQ 267 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~----------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~ 267 (308)
.+-||+.+.+ .++|||.++..++... ..|..+ .-.|+++..||||..+... .+....+.
T Consensus 92 trVyykea~~---~~iVfdvt~s~tfe~~--skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~------~~~~~~~d 160 (229)
T KOG4423|consen 92 TRVYYKEAHG---AFIVFDVTRSLTFEPV--SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK------NEATRQFD 160 (229)
T ss_pred EEEEecCCcc---eEEEEEccccccccHH--HHHHHhccCcccCCCCCcchheeccchhccChHhh------hhhHHHHH
Confidence 6677777666 7999999988776653 344432 3467899999999876432 12122222
Q ss_pred HHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 268 ELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 268 ~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+..++ .....++++|++.+.|++|.-..+.+.+-
T Consensus 161 ~f~ke--ngf~gwtets~Kenkni~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 161 NFKKE--NGFEGWTETSAKENKNIPEAQRELVEKIL 194 (229)
T ss_pred HHHhc--cCccceeeeccccccChhHHHHHHHHHHH
Confidence 22222 12478999999999999999998887653
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-10 Score=99.74 Aligned_cols=159 Identities=17% Similarity=0.190 Sum_probs=85.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe--CC--CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI--ND--SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
||+++|..++||||+.+.+..+. .+.-+..-+.|..+..-.+ .+ .+.+||+||........ +.......+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~-~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~-----~~~~~~~if 74 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKY-SPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY-----FNSQREEIF 74 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT-----HTCCHHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCC-CchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc-----ccccHHHHH
Confidence 79999999999999999999863 2444455555554443333 33 78999999975322110 000122333
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH-HHHHh---c--cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc-
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE-YASWL---G--QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ- 275 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~-l~~~~---~--~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~- 275 (308)
+.. .+++||+|+.+.....+.. +...+ . ..+..+.|.+.|+|+..... ..+..+...+.+.+...
T Consensus 75 ~~v---~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~-----r~~~~~~~~~~i~~~~~~ 146 (232)
T PF04670_consen 75 SNV---GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDE-----REEIFRDIQQRIRDELED 146 (232)
T ss_dssp CTE---SEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHH-----HHHHHHHHHHHHHHHHHH
T ss_pred hcc---CEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHH-----HHHHHHHHHHHHHHHhhh
Confidence 333 3599999998554433331 11111 1 36788999999999986543 22333333333333222
Q ss_pred ---CCCCEEEeecCCCCCHHHHHHHHHH
Q 021750 276 ---TAPPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 276 ---~~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
....++.+|-.+ +.+-+.+..+.+
T Consensus 147 ~~~~~~~~~~TSI~D-~Sly~A~S~Ivq 173 (232)
T PF04670_consen 147 LGIEDITFFLTSIWD-ESLYEAWSKIVQ 173 (232)
T ss_dssp TT-TSEEEEEE-TTS-THHHHHHHHHHH
T ss_pred ccccceEEEeccCcC-cHHHHHHHHHHH
Confidence 226788888877 456666665554
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.8e-10 Score=100.67 Aligned_cols=65 Identities=23% Similarity=0.361 Sum_probs=44.6
Q ss_pred CCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH---hhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 237 IPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ---GFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 237 ~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
+.-++|+||.|....+. ...++....+... ....|.+|++.+||.+|+|+++|++.|.+..+...
T Consensus 190 iaDi~vINKaD~~~A~~-----a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~ 257 (323)
T COG1703 190 IADIIVINKADRKGAEK-----AARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLT 257 (323)
T ss_pred hhheeeEeccChhhHHH-----HHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHH
Confidence 45589999999655321 2222222222221 22346689999999999999999999999887654
|
|
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-10 Score=102.93 Aligned_cols=157 Identities=21% Similarity=0.192 Sum_probs=99.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCC--ceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPG--KTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
...+-|++||++|+||||||++|++....+....+.. .|.....+.-+..+.+.||-|+..+-. ..+-..|+..
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP-~~LvaAF~AT--- 251 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLP-IQLVAAFQAT--- 251 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCc-HHHHHHHHHH---
Confidence 3456899999999999999999997543322211211 122223333344788999999875322 2222233333
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhccCCCC-------EEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLGQNQIP-------MTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~~~~~p-------vivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
+.....+|+++.|+|.++|.-+... ....-+...+.| ++=|-||+|..+... ..+
T Consensus 252 -LeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-----e~E----------- 314 (410)
T KOG0410|consen 252 -LEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-----EEE----------- 314 (410)
T ss_pred -HHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-----ccc-----------
Confidence 3445566789999999998655432 344444444443 566788888765331 000
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.-..+.+||++|+|++++++.+...+..
T Consensus 315 ----~n~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 315 ----KNLDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred ----cCCccccccccCccHHHHHHHHHHHhhh
Confidence 0125789999999999999998877654
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-10 Score=102.38 Aligned_cols=127 Identities=20% Similarity=0.201 Sum_probs=59.7
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHH---HHHH--HhccCCCCEEEEeecC
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL---EYAS--WLGQNQIPMTLVFTKC 246 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~---~l~~--~~~~~~~pvivV~NK~ 246 (308)
.+.++||||..+--.... ....+.+ .+.. ....++++++|+......... .+.. .....+.|.+.|+||+
T Consensus 92 ~y~l~DtPGQiElf~~~~---~~~~i~~-~L~~-~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~ 166 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSD---SGRKIVE-RLQK-NGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKI 166 (238)
T ss_dssp SEEEEE--SSHHHHHHSH---HHHHHHH-TSSS-----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--G
T ss_pred cEEEEeCCCCEEEEEech---hHHHHHH-HHhh-hcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeecc
Confidence 689999999764111011 1111221 1111 333468999999865443221 1111 1123589999999999
Q ss_pred CCCCcccCCCCCchhh-----------HHHHHHHHHhhhc---CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 247 DKRKKKKNGGKRPEEN-----------LNDFQELIQGFFQ---TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 247 Dl~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~---~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
|+.+...........+ .+.+.+.+...+. ...+++++|+.+++|+++++..+.+.+.
T Consensus 167 Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~~ 237 (238)
T PF03029_consen 167 DLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKANQ 237 (238)
T ss_dssp GGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHHH
T ss_pred CcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHhc
Confidence 9987220000000000 1223333333322 2238999999999999999999988764
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-10 Score=109.44 Aligned_cols=151 Identities=19% Similarity=0.236 Sum_probs=100.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCc-----------------------cee------ccCCCCceEEEEEEEeC--C-
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKK-----------------------LAL------TSKTPGKTQCINHFRIN--D- 171 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~-----------------------~~~------~~~~~~~t~~~~~~~~~--~- 171 (308)
....++++|..++|||||+.+|+..-. ++. .....|.|.++....++ .
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 345899999999999999999976310 000 11123566665444333 2
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCC-------hhHHHHHHHhccCC-CCEEEEe
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAK-------PIDLEYASWLGQNQ-IPMTLVF 243 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~-------~~~~~l~~~~~~~~-~pvivV~ 243 (308)
.++++|+||+.+ |....+.....+|+.++|+|++.+.- .+-.+....+...+ .-+||++
T Consensus 256 ~~tliDaPGhkd-------------Fi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivai 322 (603)
T KOG0458|consen 256 IVTLIDAPGHKD-------------FIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAI 322 (603)
T ss_pred eEEEecCCCccc-------------cchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEe
Confidence 699999999653 66666677788889999999985421 12234444444434 4578999
Q ss_pred ecCCCCCcccCCCCCchhhHHHHHHHHHhhh-------cCCCCEEEeecCCCCCHHHH
Q 021750 244 TKCDKRKKKKNGGKRPEENLNDFQELIQGFF-------QTAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 244 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~vSA~~g~gi~el 294 (308)
||+|+++- .++..+++...+..++ ...+.|++||+.+|+|+...
T Consensus 323 NKmD~V~W-------sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 323 NKMDLVSW-------SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ecccccCc-------cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 99999974 3445555555555443 23468999999999998654
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.1e-11 Score=97.28 Aligned_cols=56 Identities=32% Similarity=0.541 Sum_probs=49.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGY 181 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~ 181 (308)
..+|+++|.||||||||+|+|.+.+. ..+++.+|+|+....+..+..+.++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~-~~~~~~~g~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKV-CKVAPIPGETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCc-eeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence 45799999999999999999999754 678899999998887777778999999995
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-10 Score=101.86 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=45.0
Q ss_pred CCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 236 QIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 236 ~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
..+-++|+||+|+.+. ...+++.+.+.++... ...+++++||++|+|++++++||.+.
T Consensus 230 ~~ADIVVLNKiDLl~~-------~~~dle~~~~~lr~ln-p~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPY-------LNFDVEKCIACAREVN-PEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcc-------cHHHHHHHHHHHHhhC-CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4677999999999753 2334666666665543 35899999999999999999999874
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.4e-10 Score=96.28 Aligned_cols=82 Identities=17% Similarity=0.124 Sum_probs=54.2
Q ss_pred cEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCC
Q 021750 209 VSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTN 288 (308)
Q Consensus 209 ~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g 288 (308)
+.++.|+|+.+....... ........-++++||+|+.+.. ...++.+.+.++.. ....+++++||++|
T Consensus 114 ~~~i~vvD~~~~~~~~~~----~~~qi~~ad~~~~~k~d~~~~~-------~~~~~~~~~~~~~~-~~~~~i~~~Sa~~g 181 (199)
T TIGR00101 114 DLTIFVIDVAAGDKIPRK----GGPGITRSDLLVINKIDLAPMV-------GADLGVMERDAKKM-RGEKPFIFTNLKTK 181 (199)
T ss_pred CcEEEEEEcchhhhhhhh----hHhHhhhccEEEEEhhhccccc-------cccHHHHHHHHHHh-CCCCCEEEEECCCC
Confidence 348999999865543221 1111123348999999998531 12244444444443 33589999999999
Q ss_pred CCHHHHHHHHHHHH
Q 021750 289 QGRDEILLHMAQLR 302 (308)
Q Consensus 289 ~gi~el~~~i~~~~ 302 (308)
+|+++++++|.+.+
T Consensus 182 ~gi~el~~~i~~~~ 195 (199)
T TIGR00101 182 EGLDTVIDWIEHYA 195 (199)
T ss_pred CCHHHHHHHHHhhc
Confidence 99999999998754
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.3e-11 Score=98.07 Aligned_cols=58 Identities=36% Similarity=0.525 Sum_probs=50.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCc
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGY 181 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~ 181 (308)
.+..+++++|.||||||||+|+|.+.+. ..++..||+|+....+..+.++.++||||+
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~-~~~~~~pg~T~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRA-CNVGATPGVTKSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCccc-ceecCCCCeEcceEEEEeCCCEEEEECcCC
Confidence 3346999999999999999999999754 578899999998888888889999999995
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.3e-10 Score=90.40 Aligned_cols=156 Identities=18% Similarity=0.207 Sum_probs=100.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
..||+++|++..|||||+-.+.++++......+.|....-..+.+.+ .+.+||..|.. ++..++.
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~----------~~~n~lP-- 87 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQR----------EFINMLP-- 87 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcH----------hhhccCc--
Confidence 35999999999999999999999865444555556554444444544 58899999853 2222222
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
..+.+..++++++|.+++.+... +..|... .-+| |+|++|.|+.-.-.. ..++.+..-...+.+.
T Consensus 88 -iac~dsvaIlFmFDLt~r~TLnS--i~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~---e~Q~~I~~qar~YAk~-- 158 (205)
T KOG1673|consen 88 -IACKDSVAILFMFDLTRRSTLNS--IKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPP---ELQETISRQARKYAKV-- 158 (205)
T ss_pred -eeecCcEEEEEEEecCchHHHHH--HHHHHHHHhccCCccce-EEeccchHhhhcCCH---HHHHHHHHHHHHHHHH--
Confidence 33445567999999998766544 3555543 2345 678999996532210 0122222222222222
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
...+.|+||+....|++++|..+...
T Consensus 159 mnAsL~F~Sts~sINv~KIFK~vlAk 184 (205)
T KOG1673|consen 159 MNASLFFCSTSHSINVQKIFKIVLAK 184 (205)
T ss_pred hCCcEEEeeccccccHHHHHHHHHHH
Confidence 23789999999999999999886543
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.12 E-value=9e-10 Score=91.32 Aligned_cols=66 Identities=21% Similarity=0.345 Sum_probs=44.3
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhccCCCCEEEEeecC
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLGQNQIPMTLVFTKC 246 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~~~~~pvivV~NK~ 246 (308)
.+.++||||+....... ..++.+|+ ..+|++++|+++.......+. .+.+........+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~------~~~~~~~~---~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEH------TEITEEYL---PKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTT------SHHHHHHH---STTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhh------HHHHHHhh---ccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 58999999986532211 13677776 344679999999987765554 34444555566699999995
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-10 Score=109.03 Aligned_cols=123 Identities=22% Similarity=0.263 Sum_probs=81.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCc----ceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKK----LALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~----~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++.++|.+|||||||+|+|++... ...++..||+|.....+..++.+.++||||+.....-.. .+..-...+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~~~~~~---~l~~~~l~~ 231 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINSHQMAH---YLDKKDLKY 231 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCChhHhhh---hcCHHHHhh
Confidence 3899999999999999999998532 346888999999988888877889999999975321111 110011112
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
+.....+..+.+.+|..............++......+.+.++|.+..+.
T Consensus 232 ~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~ 281 (360)
T TIGR03597 232 ITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHR 281 (360)
T ss_pred cCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeEe
Confidence 23334445578888876544333322233444445667888888877654
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.7e-10 Score=104.56 Aligned_cols=59 Identities=41% Similarity=0.619 Sum_probs=54.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAA 185 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~ 185 (308)
.+++++|.||||||||||+|.+... +.++..||+|.....+..+..+.++||||+.+..
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~~~ 191 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIPPK 191 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCCeEEecCCCcCCCC
Confidence 5899999999999999999999865 7899999999999999999999999999998754
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.3e-10 Score=98.85 Aligned_cols=159 Identities=23% Similarity=0.228 Sum_probs=102.6
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceE--EEEEEEeCC-CEEEecCCCcccC-CCchhhhhchH
Q 021750 120 CPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQ--CINHFRIND-SWYLVDLPGYGYA-AAPRELRTDWD 195 (308)
Q Consensus 120 ~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~--~~~~~~~~~-~~~liDtpG~~~~-~~~~~~~~~~~ 195 (308)
..+-+..+++++|.|.+||||++..|.+.. ..+....++|. ......+++ ++.+.|.||++++ ..+.+.+.
T Consensus 54 V~ktg~a~vg~vgFPSvGksTl~~~l~g~~--s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~--- 128 (358)
T KOG1487|consen 54 VAKTGDARVGFVGFPSVGKSTLLSKLTGTF--SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGK--- 128 (358)
T ss_pred ceeecceeeeEEecCccchhhhhhhhcCCC--CccccccceeEEEecceEeccccceeeecCcchhcccccCCCCcc---
Confidence 345566799999999999999999999863 22333344433 234444555 8999999999884 33344222
Q ss_pred HHHHHHHHhcCCccEEEEEEeCCCCCChh--------------------------------------HHHHHH-Hhc---
Q 021750 196 KFTKDYFLNRSTLVSVFLLIDASIPAKPI--------------------------------------DLEYAS-WLG--- 233 (308)
Q Consensus 196 ~~~~~~~~~~~~~~~vl~viD~~~~~~~~--------------------------------------~~~l~~-~~~--- 233 (308)
+.+..++.+.++++|+|+-.+.+.. +.++.+ .+.
T Consensus 129 ----qviavartcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR 204 (358)
T KOG1487|consen 129 ----QVIAVARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYR 204 (358)
T ss_pred ----EEEEEeecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhh
Confidence 3334445556788999986653211 000000 000
Q ss_pred ----------------------c--CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCC
Q 021750 234 ----------------------Q--NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQ 289 (308)
Q Consensus 234 ----------------------~--~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~ 289 (308)
. ..+|.+.++||+|-..-++ ++- .......+++||-+++
T Consensus 205 ~hsAdi~Lr~DaT~DdLIdvVegnr~yVp~iyvLNkIdsISiEE---------Ldi--------i~~iphavpISA~~~w 267 (358)
T KOG1487|consen 205 IHSADIALRFDATADDLIDVVEGNRIYVPCIYVLNKIDSISIEE---------LDI--------IYTIPHAVPISAHTGW 267 (358)
T ss_pred hcchheeeecCcchhhhhhhhccCceeeeeeeeecccceeeeec---------cce--------eeeccceeeccccccc
Confidence 0 2578999999999775221 111 1123778999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 021750 290 GRDEILLHMAQLRNY 304 (308)
Q Consensus 290 gi~el~~~i~~~~~~ 304 (308)
|++++++.+.+.++-
T Consensus 268 n~d~lL~~mweyL~L 282 (358)
T KOG1487|consen 268 NFDKLLEKMWEYLKL 282 (358)
T ss_pred chHHHHHHHhhcchh
Confidence 999999999887654
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-09 Score=104.32 Aligned_cols=166 Identities=21% Similarity=0.310 Sum_probs=108.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEe------------------CC-CEEEecCCCccc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRI------------------ND-SWYLVDLPGYGY 183 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~------------------~~-~~~liDtpG~~~ 183 (308)
-|-++|+|....|||-|+..+.+.+. .-....|+|..+. .+.. .- .+.+|||||..
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNV--qegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE- 551 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNV--QEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE- 551 (1064)
T ss_pred CceEEEeecccccchHHHHHhhcccc--ccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch-
Confidence 35699999999999999999987542 1222233333221 1111 11 37899999953
Q ss_pred CCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCC-------
Q 021750 184 AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGG------- 256 (308)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~------- 256 (308)
.|. -++. +....+++.|+|+|..+++..+..+-+.++...+.|+||.+||+|....-....
T Consensus 552 ---------sFt-nlRs--rgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~ 619 (1064)
T KOG1144|consen 552 ---------SFT-NLRS--RGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEA 619 (1064)
T ss_pred ---------hhh-hhhh--ccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHH
Confidence 222 2223 444556779999999999888888888888889999999999999764321100
Q ss_pred --CCchhhHHHHHHHHHhh-------------------hcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 257 --KRPEENLNDFQELIQGF-------------------FQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 257 --~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
........+|..++... .+..+.++++||.+|+||.+|+-+|.++....
T Consensus 620 lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 620 LKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence 01112223333333211 12347889999999999999999999876543
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-09 Score=98.87 Aligned_cols=127 Identities=25% Similarity=0.390 Sum_probs=95.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCC-cc--e-----------e------ccCCCC--ceEEEEEEEeCC-CEEEecCCCcc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRK-KL--A-----------L------TSKTPG--KTQCINHFRIND-SWYLVDLPGYG 182 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~-~~--~-----------~------~~~~~~--~t~~~~~~~~~~-~~~liDtpG~~ 182 (308)
...+||-.|.+|||||...|+--- .+ + . .....| .|..+-.+.+++ .+.++||||+.
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 468999999999999999987410 00 0 0 011122 333455666666 68999999975
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhh
Q 021750 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEEN 262 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~ 262 (308)
+ |....|+...++|.+++|+|+..+...+..++.+.+...++|++-.+||+|..... +-+.
T Consensus 93 D-------------FSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rd------P~EL 153 (528)
T COG4108 93 D-------------FSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRD------PLEL 153 (528)
T ss_pred c-------------cchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCC------hHHH
Confidence 3 44566677777788999999999999999899999999999999999999987654 5667
Q ss_pred HHHHHHHHH
Q 021750 263 LNDFQELIQ 271 (308)
Q Consensus 263 ~~~~~~~~~ 271 (308)
+.++.+.++
T Consensus 154 LdEiE~~L~ 162 (528)
T COG4108 154 LDEIEEELG 162 (528)
T ss_pred HHHHHHHhC
Confidence 777777765
|
|
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.7e-09 Score=91.79 Aligned_cols=162 Identities=21% Similarity=0.241 Sum_probs=98.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-----CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-----SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.|.++|..++||||||.+|-+.+ .+.+..|..+....+..+. ++.+|-.-|-.+ ...+++..
T Consensus 54 ~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~----------h~~LLk~a 120 (473)
T KOG3905|consen 54 NVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLY----------HKGLLKFA 120 (473)
T ss_pred eEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchh----------hhhHHhhc
Confidence 89999999999999999998864 2334444444333332221 455554444110 11133332
Q ss_pred HHhcCCc-cEEEEEEeCCCCCChhHHHHHHHhc--------------------------------c--------------
Q 021750 202 FLNRSTL-VSVFLLIDASIPAKPIDLEYASWLG--------------------------------Q-------------- 234 (308)
Q Consensus 202 ~~~~~~~-~~vl~viD~~~~~~~~~~~l~~~~~--------------------------------~-------------- 234 (308)
+....-. -+|++++|.+.++...+. +.+|.. .
T Consensus 121 l~ats~aetlviltasms~Pw~~les-LqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~ 199 (473)
T KOG3905|consen 121 LPATSLAETLVILTASMSNPWTLLES-LQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTV 199 (473)
T ss_pred ccccCccceEEEEEEecCCcHHHHHH-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCccccccc
Confidence 2222111 258889999988643321 111111 0
Q ss_pred ---------------------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh-hcCCCCEEEeecCCCCCHH
Q 021750 235 ---------------------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF-FQTAPPWIMTSSVTNQGRD 292 (308)
Q Consensus 235 ---------------------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vSA~~g~gi~ 292 (308)
.++|++||++|||....-+...+..++....++..++++ +..+...|++|+++..|++
T Consensus 200 ~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNid 279 (473)
T KOG3905|consen 200 VGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNID 279 (473)
T ss_pred ccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchH
Confidence 579999999999985433322223455566666666554 2345789999999999999
Q ss_pred HHHHHHHHHH
Q 021750 293 EILLHMAQLR 302 (308)
Q Consensus 293 el~~~i~~~~ 302 (308)
-|..+|....
T Consensus 280 llyKYivhr~ 289 (473)
T KOG3905|consen 280 LLYKYIVHRS 289 (473)
T ss_pred HHHHHHHHHh
Confidence 9999987643
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-09 Score=87.58 Aligned_cols=95 Identities=15% Similarity=0.243 Sum_probs=67.4
Q ss_pred hHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 194 WDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 194 ~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
|++++++.+..+ |++++|+|++.+....+.++..++...++|+++|+||+|+.... ..+.+..... .
T Consensus 2 ~~~~~~~i~~~a---D~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~---------~~~~~~~~~~-~ 68 (156)
T cd01859 2 WKRLVRRIIKES---DVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKE---------VLEKWKSIKE-S 68 (156)
T ss_pred HHHHHHHHHhhC---CEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHH---------HHHHHHHHHH-h
Confidence 455777766544 45899999988766555566666666689999999999986421 1222221111 1
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
...+++++||+++.|++++++.+.+.+.
T Consensus 69 --~~~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 69 --EGIPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred --CCCcEEEEEccccccHHHHHHHHHHHHh
Confidence 2367999999999999999999988764
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-09 Score=98.00 Aligned_cols=61 Identities=31% Similarity=0.474 Sum_probs=53.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAA 185 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~ 185 (308)
...+++++|.||||||||+|+|.+.+. ..++..||+|+....+..+..+.++||||+....
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~-~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKI-AKTGNRPGVTKAQQWIKLGKGLELLDTPGILWPK 180 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCc-cccCCCCCeEEEEEEEEeCCcEEEEECCCcCCCC
Confidence 345899999999999999999999754 5678899999998888888899999999997643
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.3e-09 Score=102.44 Aligned_cols=118 Identities=17% Similarity=0.186 Sum_probs=86.7
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCc-c---eecc------------CCCCceEE--EEEEEeC--CCEEEecCCCc
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKK-L---ALTS------------KTPGKTQC--INHFRIN--DSWYLVDLPGY 181 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~-~---~~~~------------~~~~~t~~--~~~~~~~--~~~~liDtpG~ 181 (308)
.....+|+|+|+..+|||||..+|+.... + ..+. ...|.|.. ...+.+. ..+.++||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 45567999999999999999999986321 0 0111 11244443 2344444 48999999998
Q ss_pred ccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcc
Q 021750 182 GYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~ 252 (308)
.+ |..+..+....+|+++.|+|+..+...+...+.+.+...++|.++++||+|....+
T Consensus 87 VD-------------Ft~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 87 VD-------------FTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGAD 144 (697)
T ss_pred cc-------------cHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccC
Confidence 75 44444455556677999999999988888888888888999999999999988654
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.8e-09 Score=90.39 Aligned_cols=145 Identities=21% Similarity=0.291 Sum_probs=95.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC---C------cceecc-----CCCCceEEEEEEEe---CCCEEEecCCCcccCCCch
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR---K------KLALTS-----KTPGKTQCINHFRI---NDSWYLVDLPGYGYAAAPR 188 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~---~------~~~~~~-----~~~~~t~~~~~~~~---~~~~~liDtpG~~~~~~~~ 188 (308)
.+|+.+|.-+-|||||..+|+.. . .+.... ...|.|....++.+ ++.+-.+|+||..+
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD----- 87 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD----- 87 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH-----
Confidence 48999999999999999999762 1 011112 22367776555554 23788999999642
Q ss_pred hhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhHHHHH
Q 021750 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENLNDFQ 267 (308)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~~~~~ 267 (308)
..+..+..+..+|..++|+.++++...+..+...+....+.| +++.+||+|+.+..+ ..+..-.++.
T Consensus 88 --------YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~e----llelVemEvr 155 (394)
T COG0050 88 --------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEE----LLELVEMEVR 155 (394)
T ss_pred --------HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHH----HHHHHHHHHH
Confidence 566666777778889999999988766665555555566776 567889999997443 1112222333
Q ss_pred HHHHhh-hc-CCCCEEEeecCC
Q 021750 268 ELIQGF-FQ-TAPPWIMTSSVT 287 (308)
Q Consensus 268 ~~~~~~-~~-~~~~~~~vSA~~ 287 (308)
+.+..+ |+ ...|++.-||+.
T Consensus 156 eLLs~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 156 ELLSEYGFPGDDTPIIRGSALK 177 (394)
T ss_pred HHHHHcCCCCCCcceeechhhh
Confidence 444333 22 457888888764
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-08 Score=90.89 Aligned_cols=139 Identities=21% Similarity=0.345 Sum_probs=84.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceec---cC-----CCCceEEEEEEEe--CC---CEEEecCCCcccCCCchh--
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALT---SK-----TPGKTQCINHFRI--ND---SWYLVDLPGYGYAAAPRE-- 189 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~---~~-----~~~~t~~~~~~~~--~~---~~~liDtpG~~~~~~~~~-- 189 (308)
.+.|+++|.+|.|||||+|.|++....... .. .+++........+ ++ +++++||||+++.-....
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~w 102 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCW 102 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccH
Confidence 479999999999999999999996321111 11 1112122211222 23 689999999987433222
Q ss_pred --hhhchHHHHHHHHHh-----------cCCccEEEEEEeCC-CCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCC
Q 021750 190 --LRTDWDKFTKDYFLN-----------RSTLVSVFLLIDAS-IPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNG 255 (308)
Q Consensus 190 --~~~~~~~~~~~~~~~-----------~~~~~~vl~viD~~-~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~ 255 (308)
+..-+.....+|+.. -..+++|+|.+-++ ++.+..+.+.++.+.. .+.+|-|+-|+|...
T Consensus 103 e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD~lT----- 176 (373)
T COG5019 103 EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKADTLT----- 176 (373)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeeeccccCC-----
Confidence 111112222333322 12346899999875 5678888777666653 577888999999884
Q ss_pred CCCchhhHHHHHHHHHhh
Q 021750 256 GKRPEENLNDFQELIQGF 273 (308)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~ 273 (308)
.+++..+.+.+.+.
T Consensus 177 ----~~El~~~K~~I~~~ 190 (373)
T COG5019 177 ----DDELAEFKERIRED 190 (373)
T ss_pred ----HHHHHHHHHHHHHH
Confidence 34456666555543
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-09 Score=92.72 Aligned_cols=56 Identities=36% Similarity=0.562 Sum_probs=47.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCc-------ceeccCCCCceEEEEEEEeCCCEEEecCCCc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKK-------LALTSKTPGKTQCINHFRINDSWYLVDLPGY 181 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~-------~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~ 181 (308)
..++++|.+|||||||+|+|.+... ...++..||+|+....+..+..+.++||||+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcCC
Confidence 4799999999999999999998542 1356788899999888888778999999995
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.6e-09 Score=88.31 Aligned_cols=80 Identities=19% Similarity=0.098 Sum_probs=52.8
Q ss_pred EEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCC
Q 021750 210 SVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQ 289 (308)
Q Consensus 210 ~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~ 289 (308)
.-++|+|.+.+.....+-.-. ..+.-++|+||.|+.+.-. ..++.+.+..++. ....+++++|+++|+
T Consensus 120 ~~v~VidvteGe~~P~K~gP~----i~~aDllVInK~DLa~~v~-------~dlevm~~da~~~-np~~~ii~~n~ktg~ 187 (202)
T COG0378 120 LRVVVIDVTEGEDIPRKGGPG----IFKADLLVINKTDLAPYVG-------ADLEVMARDAKEV-NPEAPIIFTNLKTGE 187 (202)
T ss_pred eEEEEEECCCCCCCcccCCCc----eeEeeEEEEehHHhHHHhC-------ccHHHHHHHHHHh-CCCCCEEEEeCCCCc
Confidence 467888888765443320000 1124589999999987643 2244444444332 245899999999999
Q ss_pred CHHHHHHHHHHH
Q 021750 290 GRDEILLHMAQL 301 (308)
Q Consensus 290 gi~el~~~i~~~ 301 (308)
|++++++|+...
T Consensus 188 G~~~~~~~i~~~ 199 (202)
T COG0378 188 GLDEWLRFIEPQ 199 (202)
T ss_pred CHHHHHHHHHhh
Confidence 999999998764
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-09 Score=96.06 Aligned_cols=60 Identities=33% Similarity=0.484 Sum_probs=51.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAA 185 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~ 185 (308)
..+++++|.||||||||+|+|.+... ..++..||+|+....+..+..+.++||||+....
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~~~~ 177 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKV-AKVGNRPGVTKGQQWIKLSDGLELLDTPGILWPK 177 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeecceEEEEeCCCEEEEECCCcccCC
Confidence 35899999999999999999998754 5678899999988888887889999999996543
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.9e-09 Score=87.52 Aligned_cols=57 Identities=30% Similarity=0.518 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCc
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGY 181 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~ 181 (308)
...+++++|.||+|||||+|+|.+... ..++..+++|+....+..+..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLK-LKVGNVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccc-ccccCCCCcccceEEEEecCCEEEEECCCC
Confidence 456899999999999999999999754 347778899998877777778999999995
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.2e-09 Score=100.81 Aligned_cols=59 Identities=42% Similarity=0.585 Sum_probs=53.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAA 185 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~ 185 (308)
..|++||.|||||||+||+|.|.++ .-++.+||.|+..+++.+...+.+.|+||+...+
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~Kk-VsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfPS 373 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKK-VSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFPS 373 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCce-eeeecCCCCcceeEEEEcCCCceecCCCCccccC
Confidence 5899999999999999999999976 4589999999999999999999999999997643
|
|
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-09 Score=95.93 Aligned_cols=161 Identities=16% Similarity=0.213 Sum_probs=108.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCccee-------------------------ccCCCCceEE-------------
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLAL-------------------------TSKTPGKTQC------------- 163 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~-------------------------~~~~~~~t~~------------- 163 (308)
+....+|+-+|...-||||++.++++-.-..+ .-+.|++-+.
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 45567999999999999999999987421110 0011111100
Q ss_pred ---EEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCC----CChhHHHHHHHhccCC
Q 021750 164 ---INHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIP----AKPIDLEYASWLGQNQ 236 (308)
Q Consensus 164 ---~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~----~~~~~~~l~~~~~~~~ 236 (308)
...+..-+++.++|+||..- ++...+..+..+|.+++++.++.+ .+.+++...+.+. -
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDi-------------LMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--L 179 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDI-------------LMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--L 179 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHH-------------HHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--h
Confidence 01122223477899999642 344444555566778888877643 3334433333443 3
Q ss_pred CCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 237 IPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 237 ~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+.++++-||+|+..+.+ ..++.+++++.+......+.|++++||.-++|++-+.++|.+.+
T Consensus 180 khiiilQNKiDli~e~~-----A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 180 KHIIILQNKIDLIKESQ-----ALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred ceEEEEechhhhhhHHH-----HHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 67899999999997654 56777788888877777789999999999999999999998754
|
|
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-07 Score=86.61 Aligned_cols=139 Identities=24% Similarity=0.352 Sum_probs=85.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCccee-----ccCCCCceEEE----EEEEeCC---CEEEecCCCcccCCCchh---
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLAL-----TSKTPGKTQCI----NHFRIND---SWYLVDLPGYGYAAAPRE--- 189 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~-----~~~~~~~t~~~----~~~~~~~---~~~liDtpG~~~~~~~~~--- 189 (308)
.+.+.++|.+|.|||||||.|+....... ....+..|..+ ..+.-++ +++++||||+++.-....
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 47999999999999999999998643221 11112112221 1222233 689999999987433222
Q ss_pred -hhhchHHHHHHHHHhc----------CCccEEEEEEeCC-CCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCC
Q 021750 190 -LRTDWDKFTKDYFLNR----------STLVSVFLLIDAS-IPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGK 257 (308)
Q Consensus 190 -~~~~~~~~~~~~~~~~----------~~~~~vl~viD~~-~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~ 257 (308)
+..-...-..+|+..- ..+++|+|.+.++ ++....|.++++-+.. .+.+|-|+-|.|....
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~lT~------ 173 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADTLTK------ 173 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeeccccCCH------
Confidence 1111222333444321 1346899999886 4578888776666653 6788889999998854
Q ss_pred CchhhHHHHHHHHHhh
Q 021750 258 RPEENLNDFQELIQGF 273 (308)
Q Consensus 258 ~~~~~~~~~~~~~~~~ 273 (308)
+++..+.+.+.+.
T Consensus 174 ---~El~~~K~~I~~~ 186 (366)
T KOG2655|consen 174 ---DELNQFKKRIRQD 186 (366)
T ss_pred ---HHHHHHHHHHHHH
Confidence 3455665555443
|
|
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-08 Score=90.20 Aligned_cols=85 Identities=26% Similarity=0.294 Sum_probs=61.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe----------------CC----CEEEecCCCccc-
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI----------------ND----SWYLVDLPGYGY- 183 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~----------------~~----~~~liDtpG~~~- 183 (308)
-++++|||.||||||||.|+|++.. .....+|.+|.+.+.-.+ .+ .+.++|++|+..
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~--a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSK--AGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCC--CCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 3599999999999999999999975 336777777776543221 11 388999999987
Q ss_pred CCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCC
Q 021750 184 AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS 218 (308)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~ 218 (308)
++.+++++..| + ...+.+|.++.|+++.
T Consensus 98 As~G~GLGN~F---L----s~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKF---L----SHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHH---H----HhhhhccceeEEEEec
Confidence 47788877653 3 3334456688888874
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.7e-09 Score=86.40 Aligned_cols=56 Identities=39% Similarity=0.557 Sum_probs=48.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGY 181 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~ 181 (308)
.++++++|.+|+|||||+|++.+..+ ..+...+++|+....+..+..+.++||||+
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~-~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~ 170 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKV-AKVGNKPGVTKGIQWIKISPGIYLLDTPGI 170 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCEEeeeEEEEecCCEEEEECCCC
Confidence 35899999999999999999999765 467888899998887777778999999996
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.3e-08 Score=84.91 Aligned_cols=99 Identities=16% Similarity=0.081 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHH--Hh
Q 021750 195 DKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELI--QG 272 (308)
Q Consensus 195 ~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~ 272 (308)
..++..++. .++++++|+|++++......++ +....++|+++|+||+|+..... ..+..+.+.+.. ..
T Consensus 25 ~~~l~~~~~---~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~~~-----~~~~~~~~~~~~~~~~ 94 (190)
T cd01855 25 LNLLSSISP---KKALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILVGNKIDLLPKDK-----NLVRIKNWLRAKAAAG 94 (190)
T ss_pred HHHHHhccc---CCcEEEEEEECccCCCccchhH--HHhcCCCcEEEEEEchhcCCCCC-----CHHHHHHHHHHHHHhh
Confidence 344544433 3456999999987654444333 22235789999999999975322 223333333111 11
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
......+++++||++|+|+++++++|.+.+.
T Consensus 95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 95 LGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 1111236899999999999999999988653
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.6e-09 Score=97.10 Aligned_cols=58 Identities=33% Similarity=0.501 Sum_probs=49.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCC----cceeccCCCCceEEEEEEEeCCCEEEecCCCccc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRK----KLALTSKTPGKTQCINHFRINDSWYLVDLPGYGY 183 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~----~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~ 183 (308)
.++.++|.+|||||||||+|++.. ....++..||+|.....+.+++...++||||+..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~~ 222 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGIIH 222 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCccc
Confidence 379999999999999999999642 2345789999999988888877789999999964
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-08 Score=81.77 Aligned_cols=89 Identities=13% Similarity=0.149 Sum_probs=63.3
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhcc--CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLGQ--NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~--~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
....+|++++|+|++.+....+..+.+++.. .++|+++|+||+|+.+. +.+..+.+.+.+.+. ..++
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~---------~~~~~~~~~~~~~~~--~~~~ 73 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT---------WVTARWVKILSKEYP--TIAF 73 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH---------HHHHHHHHHHhcCCc--EEEE
Confidence 3445678999999998765555555666543 35899999999999742 224445555544322 2258
Q ss_pred EeecCCCCCHHHHHHHHHHHHH
Q 021750 282 MTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++||+.+.|++++++++.+..+
T Consensus 74 ~iSa~~~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 74 HASINNPFGKGSLIQLLRQFSK 95 (157)
T ss_pred EeeccccccHHHHHHHHHHHHh
Confidence 8999999999999999987654
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.1e-08 Score=91.60 Aligned_cols=67 Identities=22% Similarity=0.285 Sum_probs=47.9
Q ss_pred CCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh-hcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 236 QIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF-FQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 236 ~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
++|++||++|+|....-+......++.++.++..++.+ +..+...|++|++...+++-|+++|...+
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l 263 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRL 263 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHh
Confidence 58999999999987543322222345555666666543 23468899999999999999999977654
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.2e-08 Score=79.98 Aligned_cols=83 Identities=16% Similarity=0.168 Sum_probs=60.1
Q ss_pred cEEEEEEeCCCCCChhHHHHH-HHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCC
Q 021750 209 VSVFLLIDASIPAKPIDLEYA-SWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVT 287 (308)
Q Consensus 209 ~~vl~viD~~~~~~~~~~~l~-~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~ 287 (308)
|++++|+|+..+....+..+. .++...++|+++|+||+|+... +....+...+.... ..+++.+||++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~---------~~~~~~~~~~~~~~--~~~ii~vSa~~ 69 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK---------EVLRKWLAYLRHSY--PTIPFKISATN 69 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH---------HHHHHHHHHHHhhC--CceEEEEeccC
Confidence 568999999887766555544 4556678999999999999642 22333333333221 35689999999
Q ss_pred CCCHHHHHHHHHHHH
Q 021750 288 NQGRDEILLHMAQLR 302 (308)
Q Consensus 288 g~gi~el~~~i~~~~ 302 (308)
|.|++++++.+.+..
T Consensus 70 ~~gi~~L~~~i~~~~ 84 (155)
T cd01849 70 GQGIEKKESAFTKQT 84 (155)
T ss_pred CcChhhHHHHHHHHh
Confidence 999999999987654
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.5e-08 Score=81.90 Aligned_cols=56 Identities=41% Similarity=0.575 Sum_probs=46.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGY 181 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~ 181 (308)
..+++++|.+|+|||||+|++.+.. ...+.+.+|+|.....+..+..+.+|||||+
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence 4589999999999999999999864 3556788888877666666678999999995
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-07 Score=81.40 Aligned_cols=124 Identities=19% Similarity=0.385 Sum_probs=73.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCccee------ccCCCCceEE-E-E-EEEeCC---CEEEecCCCcccCCCchh----
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLAL------TSKTPGKTQC-I-N-HFRIND---SWYLVDLPGYGYAAAPRE---- 189 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~------~~~~~~~t~~-~-~-~~~~~~---~~~liDtpG~~~~~~~~~---- 189 (308)
|+|++||.+|.|||||+|.++....... ..+.|.++.- . . .+..++ +++++||||+++.-....
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWeP 126 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEP 126 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHH
Confidence 5999999999999999999987542211 1133333321 1 1 122233 689999999986432211
Q ss_pred ----hhhchHHHHHHHHH---h----cCCccEEEEEEeCC-CCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 190 ----LRTDWDKFTKDYFL---N----RSTLVSVFLLIDAS-IPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 190 ----~~~~~~~~~~~~~~---~----~~~~~~vl~viD~~-~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
+++++..++++-+. . -..+++|+|.+.++ ......+.++++.+.+ -..++-|+-|.|...
T Consensus 127 I~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 127 IEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-hheeeeeEeeccccc
Confidence 22233333332221 1 12345788888876 4466677776666653 356777889999764
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=3e-08 Score=91.80 Aligned_cols=56 Identities=30% Similarity=0.405 Sum_probs=43.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCC-------CceEEEEEEEeCCCEEEecCCCccc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTP-------GKTQCINHFRINDSWYLVDLPGYGY 183 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~liDtpG~~~ 183 (308)
-++|+|.||||||||||+|++... ..+...+ .||+....+.+.+...++||||+.+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~-~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~ 269 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAE-ILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVRE 269 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccc-eeeccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCc
Confidence 489999999999999999998753 2233333 3677777777766667999999976
|
|
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2e-07 Score=90.46 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=64.5
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
.+.++|.||+.-+.... .... ..+-.+|++++|+.+.+-.+..+.++.....+.+..++|+.||||....
T Consensus 207 DivliDsPGld~~se~t-------swid---~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELT-------SWID---SFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFILNNKWDASAS 276 (749)
T ss_pred cceeccCCCCCCchhhh-------HHHH---HHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEEEechhhhhcc
Confidence 58899999986533211 1222 2333567799999998888888877777776665667888899998765
Q ss_pred ccCCCCCchhhHHHHHHHHHhhh-----cCCCCEEEeecCC
Q 021750 252 KKNGGKRPEENLNDFQELIQGFF-----QTAPPWIMTSSVT 287 (308)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~vSA~~ 287 (308)
+ .+..+.+.+++.+.- .....+|+|||+.
T Consensus 277 e-------~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 277 E-------PECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred c-------HHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 3 344555555543221 1235789999653
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.5e-08 Score=92.38 Aligned_cols=57 Identities=32% Similarity=0.496 Sum_probs=45.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCC-------ceEEEEEEEeCCCEEEecCCCcccC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPG-------KTQCINHFRINDSWYLVDLPGYGYA 184 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~-------~t~~~~~~~~~~~~~liDtpG~~~~ 184 (308)
.++|+|.||||||||||+|++... ..+...++ ||+....+...+...++||||+...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~-~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE-LRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc-cccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCcccc
Confidence 489999999999999999998653 33455555 7787777777655689999999763
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-07 Score=78.52 Aligned_cols=93 Identities=15% Similarity=0.171 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 196 KFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 196 ~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
+.+.+.......+|++++|+|++.+....+..+...+ .++|+++|+||+|+... +....+.+.+...
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~---------~~~~~~~~~~~~~-- 74 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADP---------KKTKKWLKYFESK-- 74 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCCh---------HHHHHHHHHHHhc--
Confidence 3445555566677889999999877665544444444 35899999999999642 1122333333321
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
...++.+||+++.|++++.+.+.+.+
T Consensus 75 -~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 75 -GEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred -CCeEEEEECCCcccHHHHHHHHHHHH
Confidence 24689999999999999999998875
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.8e-07 Score=77.62 Aligned_cols=144 Identities=17% Similarity=0.109 Sum_probs=79.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC--CcceeccCCCCceEEEEEEEe------CCCEEEecCCCcccCCCch-hhhhch
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRR--KKLALTSKTPGKTQCINHFRI------NDSWYLVDLPGYGYAAAPR-ELRTDW 194 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~--~~~~~~~~~~~~t~~~~~~~~------~~~~~liDtpG~~~~~~~~-~~~~~~ 194 (308)
...-|+++|.+++|||+|+|.|++. .+ ........+|+.+..+.. +..++++||||+....... .. +
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f-~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~--~- 81 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGF-DVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFED--D- 81 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCe-EecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhh--h-
Confidence 3457999999999999999999998 43 444455666665433322 2379999999987543322 10 0
Q ss_pred HHHHHHHHHhcCCccEEEEEEeCCCCCChhHH--HHHHH------------hccCCCCEEEEeecCCCCCcccCC-----
Q 021750 195 DKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL--EYASW------------LGQNQIPMTLVFTKCDKRKKKKNG----- 255 (308)
Q Consensus 195 ~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~------------~~~~~~pvivV~NK~Dl~~~~~~~----- 255 (308)
.. .+....-..++++|.++........+. .+.+. .......++.|+..+++....+..
T Consensus 82 --~~-~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~~~~~~~~~~~~~ 158 (224)
T cd01851 82 --AR-LFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSLDTPLENLDITEG 158 (224)
T ss_pred --hH-HHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcCCccccccccccc
Confidence 11 111111123457788777643222211 11110 111334467777777764333221
Q ss_pred CCCchhhHHHHHHHHHhhh
Q 021750 256 GKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~ 274 (308)
.....+..+++.+.+...+
T Consensus 159 ~~~~~~~~~~ir~~l~~~f 177 (224)
T cd01851 159 RETLIEDLNKIWSSIRKPF 177 (224)
T ss_pred cchhHHHHHHHHHHHHhhc
Confidence 1224455666677776665
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-07 Score=84.18 Aligned_cols=97 Identities=14% Similarity=0.152 Sum_probs=70.6
Q ss_pred hHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 194 WDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 194 ~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
+.+.+++.......+|++++|+|+..+.+..+..+.+++. ++|+++|+||+|+.+. +..+.+.+.+..
T Consensus 8 m~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~---------~~~~~~~~~~~~- 75 (276)
T TIGR03596 8 MAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG--NKPRLIVLNKADLADP---------AVTKQWLKYFEE- 75 (276)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC--CCCEEEEEEccccCCH---------HHHHHHHHHHHH-
Confidence 3445556666667778899999998887766655666553 6899999999998642 123344444432
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
...+++.+||+++.|+++|.+.+.+.+..
T Consensus 76 --~~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 76 --KGIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred --cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 12578999999999999999999887754
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-07 Score=88.19 Aligned_cols=138 Identities=23% Similarity=0.229 Sum_probs=91.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCC-ceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPG-KTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
..+-|+++|+||+||||||..|++.-.-.......| .|.... -.++++++.+|. . +..++
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsg---K~RRiTflEcp~------------D----l~~mi 128 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSG---KTRRITFLECPS------------D----LHQMI 128 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeec---ceeEEEEEeChH------------H----HHHHH
Confidence 345678999999999999999998521111222222 221110 123789999985 1 22333
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhHHHHHHHHH----hhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ----GFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 277 (308)
.-+..+|+|++++|++-+.....++++.++...+.| ++-|++..|+.... ..+....+.+. .....+
T Consensus 129 DvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~--------stLr~~KKrlkhRfWtEiyqG 200 (1077)
T COG5192 129 DVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNP--------STLRSIKKRLKHRFWTEIYQG 200 (1077)
T ss_pred hHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccCh--------HHHHHHHHHHhhhHHHHHcCC
Confidence 445556789999999988887888888888888888 56699999998743 34555544433 333356
Q ss_pred CCEEEeecCCC
Q 021750 278 PPWIMTSSVTN 288 (308)
Q Consensus 278 ~~~~~vSA~~g 288 (308)
..+|.+|...+
T Consensus 201 aKlFylsgV~n 211 (1077)
T COG5192 201 AKLFYLSGVEN 211 (1077)
T ss_pred ceEEEeccccc
Confidence 88999987754
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.8e-08 Score=81.57 Aligned_cols=57 Identities=35% Similarity=0.507 Sum_probs=38.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcce--eccC----CCCceEEEEEEEeCCCEEEecCCCccc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLA--LTSK----TPGKTQCINHFRINDSWYLVDLPGYGY 183 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~--~~~~----~~~~t~~~~~~~~~~~~~liDtpG~~~ 183 (308)
.++++|.+|||||||+|+|.+..... .++. -..||+....+.......++||||+..
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~ 99 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRS 99 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSEEEECSHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCc
Confidence 79999999999999999999974221 1222 224555666777777889999999865
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-07 Score=75.61 Aligned_cols=76 Identities=13% Similarity=0.093 Sum_probs=55.1
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccC--CCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQN--QIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW 280 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~--~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (308)
.....+|++++|+|+..+....+..+.+++... ++|+++|+||+|+... +....+.+.+... ...+
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~---------~~~~~~~~~~~~~---~~~i 74 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTE---------EQRKAWAEYFKKE---GIVV 74 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCH---------HHHHHHHHHHHhc---CCeE
Confidence 444556779999999988877776777777654 8999999999998642 2234444444432 2579
Q ss_pred EEeecCCCCC
Q 021750 281 IMTSSVTNQG 290 (308)
Q Consensus 281 ~~vSA~~g~g 290 (308)
+++||+++.+
T Consensus 75 i~iSa~~~~~ 84 (141)
T cd01857 75 VFFSALKENA 84 (141)
T ss_pred EEEEecCCCc
Confidence 9999998764
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-07 Score=83.98 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=60.9
Q ss_pred chHHHHHHHHHhcCCccEEEEEEeCCCCC-ChhHH-HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHH
Q 021750 193 DWDKFTKDYFLNRSTLVSVFLLIDASIPA-KPIDL-EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELI 270 (308)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~vl~viD~~~~~-~~~~~-~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 270 (308)
++..+.+.++.+. |.+++|+|+.++. +.... .+..++...++|+++|+||+||.+... ...++.+.+
T Consensus 25 R~~~L~r~~~~n~---D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~--------~~~~~~~~~ 93 (245)
T TIGR00157 25 RKNELTRPIVANI---DQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDED--------MEKEQLDIY 93 (245)
T ss_pred ccceEECcccccC---CEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHH--------HHHHHHHHH
Confidence 3444555554444 4589999998766 44332 222333347899999999999975321 111223333
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
.. .+.+++++||++|+|++++++.+.+
T Consensus 94 ~~---~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 94 RN---IGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HH---CCCeEEEEecCCchhHHHHHhhhcC
Confidence 32 2468999999999999999988753
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.9e-08 Score=85.37 Aligned_cols=56 Identities=30% Similarity=0.377 Sum_probs=41.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcce--eccC----CCCceEEEEEEEeCCCEEEecCCCccc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLA--LTSK----TPGKTQCINHFRINDSWYLVDLPGYGY 183 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~--~~~~----~~~~t~~~~~~~~~~~~~liDtpG~~~ 183 (308)
.++++|.+|||||||+|+|.+..... .++. -..||+....+.. ....++||||+.+
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HGGLIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CCcEEEeCCCccc
Confidence 78999999999999999999864321 1222 2347777777776 3458999999976
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.9e-07 Score=80.78 Aligned_cols=126 Identities=21% Similarity=0.269 Sum_probs=78.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEEEEEE---------------------------------
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCINHFR--------------------------------- 168 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~~~~~--------------------------------- 168 (308)
...|-|.++|.-..||||+|+.|+..++.. .+.+.|.+.+.+....
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 455679999999999999999999976532 2333343332211110
Q ss_pred ---------eCCCEEEecCCCcccCCCc-hhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-ChhHHHHHHHhccCCC
Q 021750 169 ---------INDSWYLVDLPGYGYAAAP-RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-KPIDLEYASWLGQNQI 237 (308)
Q Consensus 169 ---------~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~-~~~~~~l~~~~~~~~~ 237 (308)
+-.++.++||||+...... ...+-.|...+ +|+..+. |.+++++|+..-. +..-.+++..+....-
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~-~WFaeR~--D~IiLlfD~hKLDIsdEf~~vi~aLkG~Ed 212 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVL-EWFAERV--DRIILLFDAHKLDISDEFKRVIDALKGHED 212 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHH-HHHHHhc--cEEEEEechhhccccHHHHHHHHHhhCCcc
Confidence 0114889999999753211 11122343333 4555544 5599999997543 3333455666666667
Q ss_pred CEEEEeecCCCCCc
Q 021750 238 PMTLVFTKCDKRKK 251 (308)
Q Consensus 238 pvivV~NK~Dl~~~ 251 (308)
.+-||+||.|.++.
T Consensus 213 kiRVVLNKADqVdt 226 (532)
T KOG1954|consen 213 KIRVVLNKADQVDT 226 (532)
T ss_pred eeEEEeccccccCH
Confidence 78899999999874
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.9e-07 Score=81.89 Aligned_cols=97 Identities=20% Similarity=0.188 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 195 DKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 195 ~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
.+.+++.......+|++++|+|+..+.+..+..+...+. ++|+++|+||+|+.+. ...+.+.+.+.+.
T Consensus 12 ~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~---------~~~~~~~~~~~~~- 79 (287)
T PRK09563 12 AKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADP---------EVTKKWIEYFEEQ- 79 (287)
T ss_pred HHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCH---------HHHHHHHHHHHHc-
Confidence 345555556667778899999998887766555555554 6999999999998642 2233444444321
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
..+++.+||+++.|++++.+.+.+.+...
T Consensus 80 --~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 80 --GIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred --CCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 35789999999999999999998887543
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.2e-08 Score=91.33 Aligned_cols=63 Identities=29% Similarity=0.534 Sum_probs=54.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAA 186 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~ 186 (308)
...+.|++||.||+||||+||.|-..+ ++.+.+.||.|.....+..-.++.++|+||+.+.+.
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~Kk-VCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKKK-VCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPSS 367 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhcc-cccccCCCCcchHHHHHHHHhceeEecCCCccCCCC
Confidence 345689999999999999999998764 588999999998777777778999999999987654
|
|
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.7e-07 Score=89.09 Aligned_cols=113 Identities=19% Similarity=0.273 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceec---------c------CCCCceEEEE--EEEe---CC---CEEEecCCC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALT---------S------KTPGKTQCIN--HFRI---ND---SWYLVDLPG 180 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~---------~------~~~~~t~~~~--~~~~---~~---~~~liDtpG 180 (308)
.+.+|+++|.-..|||+|+..|.......+. + ...|++.... .+-. ++ -+.++||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 3459999999999999999999875422110 0 0112222211 1111 11 378999999
Q ss_pred cccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCC
Q 021750 181 YGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249 (308)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~ 249 (308)
+.. |..+........|++++|+|+..+.......+++...+.+.|+++|+||+|..
T Consensus 207 HVn-------------F~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVN-------------FSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred ccc-------------chHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 763 33333344445677999999999988887778888888899999999999965
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.7e-07 Score=84.12 Aligned_cols=162 Identities=19% Similarity=0.178 Sum_probs=98.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcce----------ec--cCCCCceEE----EEEEEe-------------------
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLA----------LT--SKTPGKTQC----INHFRI------------------- 169 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~----------~~--~~~~~~t~~----~~~~~~------------------- 169 (308)
...|+..|.-+.|||||+-.|....... .. .-..|.+.+ +.-|..
T Consensus 117 hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv 196 (527)
T COG5258 117 HVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVV 196 (527)
T ss_pred eEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhh
Confidence 3489999999999999999887643100 00 000111111 111110
Q ss_pred ---CCCEEEecCCCcccCCCchhhhhchHHHHHHHHH--hcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEee
Q 021750 170 ---NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL--NRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFT 244 (308)
Q Consensus 170 ---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~N 244 (308)
++-+.++||.|.. .| ++..++ -....|..++++-++++.+....+.+..+...+.|+|+|++
T Consensus 197 ~~aDklVsfVDtvGHE----------pw---LrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvT 263 (527)
T COG5258 197 KRADKLVSFVDTVGHE----------PW---LRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVT 263 (527)
T ss_pred hhcccEEEEEecCCcc----------HH---HHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEE
Confidence 1126789998853 32 222222 23345779999999999888777777777777899999999
Q ss_pred cCCCCCcccCCCCCchhhHHHHHHHHHhh------------------hcC-CCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 245 KCDKRKKKKNGGKRPEENLNDFQELIQGF------------------FQT-APPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 245 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~-~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
|+|+..+.... -..+++..+.+..+.. .+. ..|+|.+|+.+|+|++-|.+.+..+
T Consensus 264 K~D~~~ddr~~--~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~L 337 (527)
T COG5258 264 KIDMVPDDRFQ--GVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLL 337 (527)
T ss_pred ecccCcHHHHH--HHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhC
Confidence 99998754310 0122222332222210 111 3799999999999998776665543
|
|
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.4e-07 Score=79.08 Aligned_cols=113 Identities=20% Similarity=0.283 Sum_probs=75.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe--CC--CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI--ND--SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.||.++|.+|+||||+=..+..+ ..+.....+|-|.++.+-.. -+ -+.+||+.|... ++..|
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~n-y~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~-------------fmen~ 70 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFAN-YIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEE-------------FMENY 70 (295)
T ss_pred ceEEEeccCCCCccccchhhhhh-hhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHH-------------HHHHH
Confidence 48999999999999987777654 34666777888777654333 22 467899988421 45555
Q ss_pred HH-hc----CCccEEEEEEeCCCCCChhHHHHHH-----Hhc-cCCCCEEEEeecCCCCCcc
Q 021750 202 FL-NR----STLVSVFLLIDASIPAKPIDLEYAS-----WLG-QNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 202 ~~-~~----~~~~~vl~viD~~~~~~~~~~~l~~-----~~~-~~~~pvivV~NK~Dl~~~~ 252 (308)
+. .. +..+++++|+|++..+-..|....+ ++. .....+++.+.|+|+....
T Consensus 71 ~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 71 LSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred HhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccc
Confidence 44 11 2235799999998765444432211 111 2566789999999998754
|
|
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-06 Score=78.39 Aligned_cols=144 Identities=19% Similarity=0.230 Sum_probs=96.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC-------Cc--ceecc-----CCCCceEEEEEEEeC---CCEEEecCCCcccCCCc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR-------KK--LALTS-----KTPGKTQCINHFRIN---DSWYLVDLPGYGYAAAP 187 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~-------~~--~~~~~-----~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~ 187 (308)
-.+|+-+|.-.-|||||..+++.- ++ +.... ...|.|....++.+. +++-=+|+||..+
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD---- 129 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD---- 129 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH----
Confidence 348999999999999999999761 11 11122 233777776666663 3688899999642
Q ss_pred hhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhH-HH
Q 021750 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENL-ND 265 (308)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~-~~ 265 (308)
+.+..+..+...|+.++|+.++++...+..+.+-+....+++ +++.+||.|+.++.+ ..+-+ -+
T Consensus 130 ---------YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e-----~leLVEmE 195 (449)
T KOG0460|consen 130 ---------YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPE-----MLELVEME 195 (449)
T ss_pred ---------HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHH-----HHHHHHHH
Confidence 677777888888999999999998777766655555555655 667789999996432 11111 12
Q ss_pred HHHHHHhh--hcCCCCEEEeecC
Q 021750 266 FQELIQGF--FQTAPPWIMTSSV 286 (308)
Q Consensus 266 ~~~~~~~~--~~~~~~~~~vSA~ 286 (308)
+++.+.++ -+...|++.=||+
T Consensus 196 ~RElLse~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 196 IRELLSEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred HHHHHHHcCCCCCCCCeeecchh
Confidence 23333322 2245899987765
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.6e-07 Score=83.58 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=65.3
Q ss_pred chHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 193 DWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
.|.+++..++... +++++|+|+.+.......++.+.+. ++|+++|+||+|+..... ..+.+..+.+....
T Consensus 52 ~f~~~l~~~~~~~---~~Il~VvD~~d~~~s~~~~l~~~~~--~~piilV~NK~DLl~k~~-----~~~~~~~~l~~~~k 121 (360)
T TIGR03597 52 DFLNLLNSLGDSN---ALIVYVVDIFDFEGSLIPELKRFVG--GNPVLLVGNKIDLLPKSV-----NLSKIKEWMKKRAK 121 (360)
T ss_pred HHHHHHhhcccCC---cEEEEEEECcCCCCCccHHHHHHhC--CCCEEEEEEchhhCCCCC-----CHHHHHHHHHHHHH
Confidence 5666666654433 4599999998776555555555543 689999999999975321 23334443322222
Q ss_pred hhcC-CCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 273 FFQT-APPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 273 ~~~~-~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
..+. ...++++||++|+|++++++.|.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 2121 1358999999999999999998764
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.1e-07 Score=86.13 Aligned_cols=85 Identities=20% Similarity=0.155 Sum_probs=55.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC------------------CEEEecCCCcccC-
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND------------------SWYLVDLPGYGYA- 184 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~------------------~~~liDtpG~~~~- 184 (308)
.+++|+|.||+|||||.|+|++... ......|.+|... ..+.+.+ .+.++|.||+..+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~-~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLG-NEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCc-cccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 4899999999999999999999752 1344445554432 2222211 4789999999874
Q ss_pred CCchhhhhchHHHHHHHHHhcCCccEEEEEEeCC
Q 021750 185 AAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS 218 (308)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~ 218 (308)
+.+.+++.+ |+ .....+|++++|+|+.
T Consensus 82 s~g~Glgn~---fL----~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQ---FL----ANIREVDIIQHVVRCF 108 (368)
T ss_pred hcccCcchH---HH----HHHHhCCEEEEEEeCC
Confidence 344454443 33 3344456689999985
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.2e-07 Score=83.53 Aligned_cols=56 Identities=30% Similarity=0.458 Sum_probs=41.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCC-------CceEEEEEEEeCCCEEEecCCCccc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTP-------GKTQCINHFRINDSWYLVDLPGYGY 183 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~liDtpG~~~ 183 (308)
.++++|.+|||||||+|+|++... ..+...+ .+|+....+...+...++||||+..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~-~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~ 228 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLE-LKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSS 228 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcC-CCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCc
Confidence 689999999999999999998643 2222222 3566666666666678999999974
|
|
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.4e-07 Score=81.45 Aligned_cols=158 Identities=21% Similarity=0.234 Sum_probs=95.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcc-----ee-------ccCCCCceEEE-----------EEEEeC------------
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKL-----AL-------TSKTPGKTQCI-----------NHFRIN------------ 170 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~-----~~-------~~~~~~~t~~~-----------~~~~~~------------ 170 (308)
.+++++|...+|||||+..|...+.. +. ..-..|.|..+ +.+.+.
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence 49999999999999999988865311 00 00011211111 011110
Q ss_pred -CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCC
Q 021750 171 -DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249 (308)
Q Consensus 171 -~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~ 249 (308)
.-++++|.+|... |.+...+-+...+ -+..++|+.+..+......+.+.++...++|++++++|+|+.
T Consensus 248 SKlvTfiDLAGh~k----------Y~~TTi~gLtgY~-Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~ 316 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAK----------YQKTTIHGLTGYT-PHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLV 316 (591)
T ss_pred cceEEEeecccchh----------hheeeeeecccCC-CceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccc
Confidence 1278999999642 1111111111111 244788999988887766666677777789999999999998
Q ss_pred CcccCCCCCchhhHHHHHHHHHh-----------------------hhcCCCCEEEeecCCCCCHHHHHHHHH
Q 021750 250 KKKKNGGKRPEENLNDFQELIQG-----------------------FFQTAPPWIMTSSVTNQGRDEILLHMA 299 (308)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~vSA~~g~gi~el~~~i~ 299 (308)
+... .+..++++...+.+ ..+...|+|.+|+.+|+|++-+...+.
T Consensus 317 ~~~~-----~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn 384 (591)
T KOG1143|consen 317 DRQG-----LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLN 384 (591)
T ss_pred cchh-----HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHh
Confidence 7643 23333333333321 122357999999999999987665543
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-07 Score=87.17 Aligned_cols=58 Identities=34% Similarity=0.545 Sum_probs=52.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYA 184 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~ 184 (308)
.+++|+|.|||||||+||+|...+ ...+...||.|+....+..+..+.++|.||+...
T Consensus 253 IrvGViG~PNVGKSSvINsL~~~k-~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~~ 310 (435)
T KOG2484|consen 253 IRVGIIGYPNVGKSSVINSLKRRK-ACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVPP 310 (435)
T ss_pred eEeeeecCCCCChhHHHHHHHHhc-cccCCCCccchhhhhheeccCCceeccCCceeec
Confidence 489999999999999999999975 4788999999999999999999999999998753
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.4e-07 Score=72.25 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKK 150 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~ 150 (308)
.||+++|..|+|||+|+.++....+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~ 25 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPF 25 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCc
Confidence 3899999999999999999976543
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.8e-06 Score=80.10 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=56.1
Q ss_pred CccEEEEEEeCCCCC-ChhH-HHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEee
Q 021750 207 TLVSVFLLIDASIPA-KPID-LEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTS 284 (308)
Q Consensus 207 ~~~~vl~viD~~~~~-~~~~-~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS 284 (308)
.+|.+++|+|..++. .... ..++..+...++|+++|+||+||... +..+.+.+.+.. .+.+++++|
T Consensus 89 NvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~---------~~~~~~~~~~~~---~g~~v~~iS 156 (352)
T PRK12289 89 NADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP---------TEQQQWQDRLQQ---WGYQPLFIS 156 (352)
T ss_pred cCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh---------HHHHHHHHHHHh---cCCeEEEEE
Confidence 456699999998654 2211 12233334468999999999999742 223444444432 246799999
Q ss_pred cCCCCCHHHHHHHHHH
Q 021750 285 SVTNQGRDEILLHMAQ 300 (308)
Q Consensus 285 A~~g~gi~el~~~i~~ 300 (308)
|+++.|+++|++++..
T Consensus 157 A~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 157 VETGIGLEALLEQLRN 172 (352)
T ss_pred cCCCCCHHHHhhhhcc
Confidence 9999999999988764
|
|
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.6e-06 Score=89.70 Aligned_cols=125 Identities=23% Similarity=0.287 Sum_probs=75.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceecc-------CCCCceEEEEEEEeCCCEEEecCCCcccCCC--chhhhhch
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTS-------KTPGKTQCINHFRINDSWYLVDLPGYGYAAA--PRELRTDW 194 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~ 194 (308)
..|=.+++|++|+||||+|+.- +-++ +... ...+-|..+..+ +.++.+++||+|..-... ...-...|
T Consensus 110 ~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~~~~~~~~~~~~~~t~~c~ww-f~~~avliDtaG~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQNS-GLKF-PLAERLGAAALRGVGGTRNCDWW-FTDEAVLIDTAGRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred cCCCEEEECCCCCchhHHHHhC-CCCC-cCchhhccccccCCCCCcccceE-ecCCEEEEcCCCccccCCCcccccHHHH
Confidence 3456899999999999999987 4333 2111 112233333333 456788999999532211 11112245
Q ss_pred HHHHHHH--HHhcCCccEEEEEEeCCCCCChhHH-------HHHHHhc------cCCCCEEEEeecCCCCCc
Q 021750 195 DKFTKDY--FLNRSTLVSVFLLIDASIPAKPIDL-------EYASWLG------QNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 195 ~~~~~~~--~~~~~~~~~vl~viD~~~~~~~~~~-------~l~~~~~------~~~~pvivV~NK~Dl~~~ 251 (308)
..++... ++.+..+++||+++|..+-...... .+...+. ....||.||+||||+...
T Consensus 187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 5555533 2445678899999999765432111 1111111 268999999999998864
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.7e-06 Score=78.77 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=57.2
Q ss_pred cCCccEEEEEEeCCCCCChhHH--HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 205 RSTLVSVFLLIDASIPAKPIDL--EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
+..+|.+++|+|+.++...... .+...+...++|+++|+||+|+.+. .+..+.+.+.+.. .+.++++
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~--------~~~~~~~~~~~~~---~g~~v~~ 146 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDD--------LEEARELLALYRA---IGYDVLE 146 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCC--------HHHHHHHHHHHHH---CCCeEEE
Confidence 3556789999999876443321 2333344578999999999999632 1223334333332 2368999
Q ss_pred eecCCCCCHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMA 299 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~ 299 (308)
+||++++|++++++.+.
T Consensus 147 vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 147 LSAKEGEGLDELKPLLA 163 (298)
T ss_pred EeCCCCccHHHHHhhcc
Confidence 99999999999998764
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1e-06 Score=78.98 Aligned_cols=125 Identities=24% Similarity=0.279 Sum_probs=71.3
Q ss_pred chHHHHhhcCeEEcCCCCCcCCCchh----hHHHHhCCCe--EEEeecccchhhhhH-----HHhh--------cccCCC
Q 021750 58 PEPHVAISLEKLFVPPETEVSIDDSS----LSTRILKGSN--IVLSKYARDAQVAQA-----EFVK--------SSVRTE 118 (308)
Q Consensus 58 ~~~~~~~~~~~i~v~~gt~~~~~~~~----~~~~~~~~~~--i~~~~~~~~~~~~~~-----~f~~--------s~~~~~ 118 (308)
.+.-++.+.+.++|+.+.....+.+. ++.....|.+ |+++|.+.-...... ..+. .+....
T Consensus 73 ~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~ 152 (301)
T COG1162 73 IRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNG 152 (301)
T ss_pred eCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCc
Confidence 33344445555878777776655443 3334444555 778887653211111 1111 000000
Q ss_pred C-C-----CCCCCCeEEEEcCCCCCHHHHHHHHhcCCc--ceeccC----CCCceEEEEEEEeCCCEEEecCCCccc
Q 021750 119 D-C-----PSDGLPEFALVGRSNVGKSSLLNSLVRRKK--LALTSK----TPGKTQCINHFRINDSWYLVDLPGYGY 183 (308)
Q Consensus 119 ~-~-----~~~~~~~I~lvG~~~vGKSSLin~l~~~~~--~~~~~~----~~~~t~~~~~~~~~~~~~liDtpG~~~ 183 (308)
. . .-.+. -.+++|.+|||||||+|+|..... ...++. -..||+....+...+.-.++||||+.+
T Consensus 153 ~~~~~l~~~l~~~-~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~ 228 (301)
T COG1162 153 DGLEELAELLAGK-ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRS 228 (301)
T ss_pred ccHHHHHHHhcCC-eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCc
Confidence 0 0 01122 689999999999999999998432 112222 235677777888866667899999865
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.5e-06 Score=77.05 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=58.3
Q ss_pred EEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC-CCCEEEeecCCC
Q 021750 210 SVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT-APPWIMTSSVTN 288 (308)
Q Consensus 210 ~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vSA~~g 288 (308)
+|++|+|+.+.......++.++.. ++|+++|+||+|+..... ..+.++.+.+...+..+. ...++.+||+++
T Consensus 72 lIv~VVD~~D~~~s~~~~L~~~~~--~kpviLViNK~DLl~~~~-----~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g 144 (365)
T PRK13796 72 LVVNVVDIFDFNGSWIPGLHRFVG--NNPVLLVGNKADLLPKSV-----KKNKVKNWLRQEAKELGLRPVDVVLISAQKG 144 (365)
T ss_pred EEEEEEECccCCCchhHHHHHHhC--CCCEEEEEEchhhCCCcc-----CHHHHHHHHHHHHHhcCCCcCcEEEEECCCC
Confidence 699999998766554445555443 689999999999975321 233444443333222221 136899999999
Q ss_pred CCHHHHHHHHHHH
Q 021750 289 QGRDEILLHMAQL 301 (308)
Q Consensus 289 ~gi~el~~~i~~~ 301 (308)
.|++++++.|.+.
T Consensus 145 ~gI~eL~~~I~~~ 157 (365)
T PRK13796 145 HGIDELLEAIEKY 157 (365)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999765
|
|
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2e-05 Score=75.06 Aligned_cols=131 Identities=22% Similarity=0.337 Sum_probs=82.3
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCCccee------------ccC-------------------------------
Q 021750 120 CPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLAL------------TSK------------------------------- 156 (308)
Q Consensus 120 ~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~------------~~~------------------------------- 156 (308)
...+..|+|++||...+||||.+..+......+. ++.
T Consensus 303 nt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e 382 (980)
T KOG0447|consen 303 NTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHE 382 (980)
T ss_pred cccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHH
Confidence 3457789999999999999999999976531110 000
Q ss_pred ---------CCCceEEE--EEEEeCC----CEEEecCCCcccC---CCchhhhhchHHHHHHHHHhcCCccEEEEEEeCC
Q 021750 157 ---------TPGKTQCI--NHFRIND----SWYLVDLPGYGYA---AAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS 218 (308)
Q Consensus 157 ---------~~~~t~~~--~~~~~~~----~~~liDtpG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~ 218 (308)
..|.|... ....+.+ +++++|.||++.. ....+....+..+.++|+.+-.++ ++++-|.+
T Consensus 383 ~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAI--ILCIQDGS 460 (980)
T KOG0447|consen 383 IELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAI--ILCIQDGS 460 (980)
T ss_pred HHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeE--EEEeccCC
Confidence 11233322 2223333 6999999999752 112233445667888888776663 44444555
Q ss_pred CC-CChhHHHHHHHhccCCCCEEEEeecCCCCCcc
Q 021750 219 IP-AKPIDLEYASWLGQNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 219 ~~-~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~ 252 (308)
-. ....-..+...+...++..|+|++|.|+.+..
T Consensus 461 VDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEkn 495 (980)
T KOG0447|consen 461 VDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKN 495 (980)
T ss_pred cchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhc
Confidence 32 11222345555666889999999999998754
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.9e-06 Score=78.06 Aligned_cols=58 Identities=34% Similarity=0.457 Sum_probs=42.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcce--ecc----CCCCceEEEEEEEeCCCEEEecCCCccc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLA--LTS----KTPGKTQCINHFRINDSWYLVDLPGYGY 183 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~--~~~----~~~~~t~~~~~~~~~~~~~liDtpG~~~ 183 (308)
..++++|.+|||||||+|+|++..... .++ ...++|.....+...+...++||||+.+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCc
Confidence 379999999999999999999864321 111 2234666666777765668999999954
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-05 Score=73.16 Aligned_cols=153 Identities=17% Similarity=0.209 Sum_probs=79.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCC-----cceecc-CC---------------CCceEEEEE---------E-------
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRK-----KLALTS-KT---------------PGKTQCINH---------F------- 167 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~-----~~~~~~-~~---------------~~~t~~~~~---------~------- 167 (308)
..-|+++|++|+||||++..|...- .+.... +. .+....... +
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 3479999999999999999887621 111111 11 111111000 0
Q ss_pred EeCCCEEEecCCCcccCCCchhhhhchHHHHHHHH-HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecC
Q 021750 168 RINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYF-LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKC 246 (308)
Q Consensus 168 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~ 246 (308)
.-+..++++||||..... ..+-.++..+.+-.- ......+.+++|+|++.+..... +...+.. .-.+.-+|+||.
T Consensus 194 ~~~~D~ViIDTaGr~~~~--~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~a~~f~~-~~~~~giIlTKl 269 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNK--TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-QAKAFHE-AVGLTGIILTKL 269 (318)
T ss_pred hCCCCEEEEeCCCCCcCC--HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-HHHHHHh-hCCCCEEEEECC
Confidence 011269999999964321 111112222221100 01123355899999996544333 2222222 123457899999
Q ss_pred CCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHH
Q 021750 247 DKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLH 297 (308)
Q Consensus 247 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~ 297 (308)
|...... .+-.+.... ..|+.+++ +|++++++...
T Consensus 270 D~t~~~G--------~~l~~~~~~------~~Pi~~v~--~Gq~~~Dl~~~ 304 (318)
T PRK10416 270 DGTAKGG--------VVFAIADEL------GIPIKFIG--VGEGIDDLQPF 304 (318)
T ss_pred CCCCCcc--------HHHHHHHHH------CCCEEEEe--CCCChhhCccC
Confidence 9553211 122222222 37899998 78888877543
|
|
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.9e-06 Score=81.22 Aligned_cols=114 Identities=23% Similarity=0.231 Sum_probs=75.6
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccC---------------CCCceEEEEEEEe--CC-CEEEecCCCcc
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSK---------------TPGKTQCINHFRI--ND-SWYLVDLPGYG 182 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~---------------~~~~t~~~~~~~~--~~-~~~liDtpG~~ 182 (308)
...+..+|+++..-.-|||||...|+..+. -+.+. +.|.|.....+.. .+ .+.++|+||+.
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asng-vis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNG-VISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhcc-EechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 456677999999999999999999987642 11111 2244443222222 22 68999999987
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCC
Q 021750 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDK 248 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl 248 (308)
+ |.+......+- .|..+.++|+..+...+...+.+..-..+...++|+||+|.
T Consensus 84 d----------f~sevssas~l---~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 84 D----------FSSEVSSASRL---SDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred c----------hhhhhhhhhhh---cCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhh
Confidence 4 22222222233 34578899999988887777777333346788999999993
|
|
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.3e-06 Score=76.37 Aligned_cols=63 Identities=38% Similarity=0.536 Sum_probs=49.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC----CcceeccCCCCceEEEEE-EEeCC--CEEEecCCCcccCC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRR----KKLALTSKTPGKTQCINH-FRIND--SWYLVDLPGYGYAA 185 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~----~~~~~~~~~~~~t~~~~~-~~~~~--~~~liDtpG~~~~~ 185 (308)
.....+.++|-||+|||||||++... ...+.+...||.|+.+.. +.+.. .++++||||+.-+.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~ 210 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPS 210 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCC
Confidence 34569999999999999999998762 244678899999998744 55533 69999999997653
|
|
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.1e-06 Score=74.83 Aligned_cols=155 Identities=21% Similarity=0.256 Sum_probs=94.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcc-----e-------eccCCCCceEE------------------------EEEEEe
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKL-----A-------LTSKTPGKTQC------------------------INHFRI 169 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~-----~-------~~~~~~~~t~~------------------------~~~~~~ 169 (308)
.+|+++|...+|||||+..|+..+.. + ......|.|.. ..+..+
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkI 213 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKI 213 (641)
T ss_pred EEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccceee
Confidence 49999999999999999888764310 0 00001111110 011111
Q ss_pred CC----CEEEecCCCcccCCCchhhhhchHHHHHHHH--HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEe
Q 021750 170 ND----SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF--LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVF 243 (308)
Q Consensus 170 ~~----~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~ 243 (308)
.. -++++|.+|... .++... .....-|..++++-++.+.--...+.+.+.....+|+++|+
T Consensus 214 ce~saKviTFIDLAGHEk-------------YLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVV 280 (641)
T KOG0463|consen 214 CEDSAKVITFIDLAGHEK-------------YLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVV 280 (641)
T ss_pred ccccceeEEEEeccchhh-------------hhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEE
Confidence 11 378899988531 111111 12223356888998887654444444555555689999999
Q ss_pred ecCCCCCcccCCCCCchhhHHHHHHHHHhh---------------------hc--CCCCEEEeecCCCCCHHHHHHHH
Q 021750 244 TKCDKRKKKKNGGKRPEENLNDFQELIQGF---------------------FQ--TAPPWIMTSSVTNQGRDEILLHM 298 (308)
Q Consensus 244 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~--~~~~~~~vSA~~g~gi~el~~~i 298 (308)
+|+|+...+ +.++.++.+.+.++.. |. ..+|+|.+|..+|+|++-|..++
T Consensus 281 TKIDMCPAN-----iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 281 TKIDMCPAN-----ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred EeeccCcHH-----HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 999998755 2556666666665531 11 24899999999999998665554
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.3e-05 Score=75.27 Aligned_cols=158 Identities=22% Similarity=0.272 Sum_probs=92.8
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHH
Q 021750 120 CPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDK 196 (308)
Q Consensus 120 ~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~ 196 (308)
......+..-++|..|+|||.|+++++++...............++.+...+ .+++-|.+-. . +.
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~----~~------- 487 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-D----QD------- 487 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-c----cc-------
Confidence 3445567899999999999999999999753221111111111222222222 3455555322 1 00
Q ss_pred HHHHHHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 197 FTKDYFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 197 ~~~~~~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
++.. .+ ..+|++++++|.+.+.++... .+..+......|+++|+.|+|+.+..+.. .-...+++..++
T Consensus 488 ~l~~--ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~----~iqpde~~~~~~--- 557 (625)
T KOG1707|consen 488 FLTS--KE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRY----SIQPDEFCRQLG--- 557 (625)
T ss_pred cccC--cc-ceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhhhcc----CCChHHHHHhcC---
Confidence 1111 11 456789999999977665543 12223334789999999999998765432 122256666654
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+.+.+|.++... .++|..|....
T Consensus 558 --i~~P~~~S~~~~~s-~~lf~kL~~~A 582 (625)
T KOG1707|consen 558 --LPPPIHISSKTLSS-NELFIKLATMA 582 (625)
T ss_pred --CCCCeeeccCCCCC-chHHHHHHHhh
Confidence 24566677775333 77887776653
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=9e-06 Score=75.42 Aligned_cols=85 Identities=14% Similarity=0.115 Sum_probs=55.9
Q ss_pred CccEEEEEEeCCCCCChhHH-HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeec
Q 021750 207 TLVSVFLLIDASIPAKPIDL-EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSS 285 (308)
Q Consensus 207 ~~~~vl~viD~~~~~~~~~~-~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA 285 (308)
.+|.+++|++.....+.... .++..+...++|+++|+||+|+....+ .+....+.+.+.. .+.+++++||
T Consensus 120 NvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~------~~~~~~~~~~y~~---~g~~v~~vSA 190 (347)
T PRK12288 120 NIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEG------RAFVNEQLDIYRN---IGYRVLMVSS 190 (347)
T ss_pred EccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHH------HHHHHHHHHHHHh---CCCeEEEEeC
Confidence 35678888887644443322 222234457899999999999975321 1223333333322 2468999999
Q ss_pred CCCCCHHHHHHHHHH
Q 021750 286 VTNQGRDEILLHMAQ 300 (308)
Q Consensus 286 ~~g~gi~el~~~i~~ 300 (308)
++++|+++|+++|..
T Consensus 191 ~tg~GideL~~~L~~ 205 (347)
T PRK12288 191 HTGEGLEELEAALTG 205 (347)
T ss_pred CCCcCHHHHHHHHhh
Confidence 999999999998864
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.7e-05 Score=67.81 Aligned_cols=152 Identities=17% Similarity=0.193 Sum_probs=78.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC-----CcceeccCC----------------CCceEEEE-------E--E-------
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR-----KKLALTSKT----------------PGKTQCIN-------H--F------- 167 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~-----~~~~~~~~~----------------~~~t~~~~-------~--~------- 167 (308)
...|+++|.+|+||||++..|... ..+...+-. .+...... . +
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~ 151 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAK 151 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 347899999999999988888641 111111111 11111000 0 0
Q ss_pred EeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHH--hcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeec
Q 021750 168 RINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL--NRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTK 245 (308)
Q Consensus 168 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK 245 (308)
.-+..++++||||..... ..+..++..+.+. .. .....+.+++|+|++.+..... ....+.... .+.-+|+||
T Consensus 152 ~~~~D~ViIDT~G~~~~d--~~~~~el~~~~~~-~~~~~~~~~~~~~LVl~a~~~~~~~~-~~~~f~~~~-~~~g~IlTK 226 (272)
T TIGR00064 152 ARNIDVVLIDTAGRLQNK--VNLMDELKKIKRV-IKKVDKDAPDEVLLVLDATTGQNALE-QAKVFNEAV-GLTGIILTK 226 (272)
T ss_pred HCCCCEEEEeCCCCCcch--HHHHHHHHHHHHH-HhcccCCCCceEEEEEECCCCHHHHH-HHHHHHhhC-CCCEEEEEc
Confidence 012378999999965321 1111122222211 11 0122456899999985432222 222222222 346789999
Q ss_pred CCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHH
Q 021750 246 CDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLH 297 (308)
Q Consensus 246 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~ 297 (308)
+|...... .+-.+.... ..|+.+++ +|++++++..+
T Consensus 227 lDe~~~~G--------~~l~~~~~~------~~Pi~~~~--~Gq~~~dl~~~ 262 (272)
T TIGR00064 227 LDGTAKGG--------IILSIAYEL------KLPIKFIG--VGEKIDDLAPF 262 (272)
T ss_pred cCCCCCcc--------HHHHHHHHH------CcCEEEEe--CCCChHhCccC
Confidence 99765321 122222222 37888888 78888877544
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.8e-05 Score=72.09 Aligned_cols=116 Identities=16% Similarity=0.057 Sum_probs=63.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc-----CCcceeccCC----------------CCceEEEEEE--E--------------
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR-----RKKLALTSKT----------------PGKTQCINHF--R-------------- 168 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~-----~~~~~~~~~~----------------~~~t~~~~~~--~-------------- 168 (308)
.-|+++|.+||||||++..|.. +..+..++.. .+........ .
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~ 180 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK 180 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh
Confidence 3689999999999999999873 1122222111 1111111000 0
Q ss_pred eCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCC
Q 021750 169 INDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDK 248 (308)
Q Consensus 169 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl 248 (308)
.+..++++||||... ....+ ..-+..+. .....+.+++|+|+..+....+ ....+.+.-.+--+|+||.|-
T Consensus 181 ~~~DvViIDTaGr~~--~d~~l----m~El~~i~-~~~~p~e~lLVlda~~Gq~a~~--~a~~F~~~~~~~g~IlTKlD~ 251 (429)
T TIGR01425 181 ENFDIIIVDTSGRHK--QEDSL----FEEMLQVA-EAIQPDNIIFVMDGSIGQAAEA--QAKAFKDSVDVGSVIITKLDG 251 (429)
T ss_pred CCCCEEEEECCCCCc--chHHH----HHHHHHHh-hhcCCcEEEEEeccccChhHHH--HHHHHHhccCCcEEEEECccC
Confidence 023789999999532 11111 11222222 2223456899999987654432 234443333467789999997
Q ss_pred CC
Q 021750 249 RK 250 (308)
Q Consensus 249 ~~ 250 (308)
..
T Consensus 252 ~a 253 (429)
T TIGR01425 252 HA 253 (429)
T ss_pred CC
Confidence 64
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.7e-05 Score=73.04 Aligned_cols=101 Identities=19% Similarity=0.139 Sum_probs=55.4
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
.++++||+|..... ..+.. -++...... ..+.+++|+|+..+.... +....+...-..--+|+||.|....
T Consensus 224 DvVLIDTaGr~~~~--~~lm~----eL~~i~~~~-~pd~~iLVl~a~~g~d~~--~~a~~f~~~~~~~giIlTKlD~~~~ 294 (336)
T PRK14974 224 DVVLIDTAGRMHTD--ANLMD----ELKKIVRVT-KPDLVIFVGDALAGNDAV--EQAREFNEAVGIDGVILTKVDADAK 294 (336)
T ss_pred CEEEEECCCccCCc--HHHHH----HHHHHHHhh-CCceEEEeeccccchhHH--HHHHHHHhcCCCCEEEEeeecCCCC
Confidence 68999999965311 12111 122222222 235588999997654322 2233332222345678999998653
Q ss_pred ccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHH
Q 021750 252 KKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLH 297 (308)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~ 297 (308)
.. . +-.+.... ..|+.+++ +|++++++..+
T Consensus 295 ~G-------~-~ls~~~~~------~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 295 GG-------A-ALSIAYVI------GKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred cc-------H-HHHHHHHH------CcCEEEEe--CCCChhhcccC
Confidence 21 1 11222222 37888888 79999887644
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.6e-06 Score=74.11 Aligned_cols=83 Identities=19% Similarity=0.166 Sum_probs=55.4
Q ss_pred CCccEEEEEEeCCCCC-ChhHH-HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEe
Q 021750 206 STLVSVFLLIDASIPA-KPIDL-EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~-~~~~~-~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 283 (308)
..+|.+++|+|+..+. +.... .+...+...++|+++|+||+|+.+.. + ...+...... .+.+++++
T Consensus 77 anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~--------~-~~~~~~~~~~---~g~~v~~v 144 (287)
T cd01854 77 ANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDE--------E-EELELVEALA---LGYPVLAV 144 (287)
T ss_pred EeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChH--------H-HHHHHHHHHh---CCCeEEEE
Confidence 3457799999998876 43322 22333345789999999999997531 1 1111222211 24689999
Q ss_pred ecCCCCCHHHHHHHHHH
Q 021750 284 SSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 284 SA~~g~gi~el~~~i~~ 300 (308)
||+++.|+++|+.+|..
T Consensus 145 SA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 145 SAKTGEGLDELREYLKG 161 (287)
T ss_pred ECCCCccHHHHHhhhcc
Confidence 99999999999988753
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.9e-05 Score=63.23 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++++|..|+|||||++.++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4789999999999999999875
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.9e-05 Score=64.45 Aligned_cols=128 Identities=15% Similarity=0.207 Sum_probs=66.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc----CCcceeccCCCC-c----------eEEEEEEE---------------------eC
Q 021750 127 EFALVGRSNVGKSSLLNSLVR----RKKLALTSKTPG-K----------TQCINHFR---------------------IN 170 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~----~~~~~~~~~~~~-~----------t~~~~~~~---------------------~~ 170 (308)
-+++.|..|+|||||++.++. ..+.+......| . ......+. ..
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~ 81 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREY 81 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhc
Confidence 478999999999999999993 222222222111 0 00011110 11
Q ss_pred --C-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhH--HHHHHHhccCCCCEEEEeec
Q 021750 171 --D-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPID--LEYASWLGQNQIPMTLVFTK 245 (308)
Q Consensus 171 --~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~--~~l~~~~~~~~~pvivV~NK 245 (308)
. ...++.+.|......- .+....+...-..+.++.|+|+.......+ ..+...+. ..-++|+||
T Consensus 82 ~~~~d~IiIE~sG~a~p~~l--------~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~---~ADvIvlnK 150 (178)
T PF02492_consen 82 EERPDRIIIETSGLADPAPL--------ILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA---FADVIVLNK 150 (178)
T ss_dssp HGC-SEEEEEEECSSGGGGH--------HHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC---T-SEEEEE-
T ss_pred CCCcCEEEECCccccccchh--------hhccccccccccccceeEEeccccccccccchhhhhhcch---hcCEEEEec
Confidence 2 5788899886532211 011222333344566999999965421111 12333333 334889999
Q ss_pred CCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 246 CDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 246 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
+|+.+.. +.++.+.+.+++.
T Consensus 151 ~D~~~~~--------~~i~~~~~~ir~l 170 (178)
T PF02492_consen 151 IDLVSDE--------QKIERVREMIREL 170 (178)
T ss_dssp GGGHHHH----------HHHHHHHHHHH
T ss_pred cccCChh--------hHHHHHHHHHHHH
Confidence 9998632 1245566555544
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.6e-06 Score=78.06 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=81.9
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCc-ce---ec------------cCCCCceEE--EEEEEeCC-CEEEecCCCcc
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKK-LA---LT------------SKTPGKTQC--INHFRIND-SWYLVDLPGYG 182 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~-~~---~~------------~~~~~~t~~--~~~~~~~~-~~~liDtpG~~ 182 (308)
.....+|+++-.-.+||||+.++++.... .. .+ ....|+|.. ...+.+.+ ++.++||||+.
T Consensus 36 ~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHv 115 (721)
T KOG0465|consen 36 LNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHV 115 (721)
T ss_pred hhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCce
Confidence 34566899999999999999999886321 00 00 011233332 23344444 89999999987
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcc
Q 021750 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~ 252 (308)
+.. .+.-+.....|++++|+|+..+...+.....+.+...++|.+..+||+|.....
T Consensus 116 DFT-------------~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 116 DFT-------------FEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGAS 172 (721)
T ss_pred eEE-------------EEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCC
Confidence 533 222244445566899999998887777766777777899999999999988754
|
|
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2e-06 Score=79.25 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=80.3
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcc----------eec------cCCCCceEEE--EEEEeCC-CEEEecCCCc
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKL----------ALT------SKTPGKTQCI--NHFRIND-SWYLVDLPGY 181 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~----------~~~------~~~~~~t~~~--~~~~~~~-~~~liDtpG~ 181 (308)
+...+.+|+++..-.+||||...+++.-... ..+ ....|.|... ..+.|.+ ++.++||||.
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpgh 112 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGH 112 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCc
Confidence 3345668999999999999999998752100 011 1123555543 3455555 8999999998
Q ss_pred ccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 182 GYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
.+.....+ +.....|+++.|+|++.+...+.....+.....++|-++.+||+|....
T Consensus 113 vdf~leve-------------rclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 113 VDFRLEVE-------------RCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred ceEEEEHH-------------HHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhh
Confidence 64322111 2223345589999999988777765556666788999999999998754
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00012 Score=68.44 Aligned_cols=117 Identities=22% Similarity=0.259 Sum_probs=62.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC-------cceeccCCC----------------CceEEEEE---------EEe-CCCE
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK-------KLALTSKTP----------------GKTQCINH---------FRI-NDSW 173 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~-------~~~~~~~~~----------------~~t~~~~~---------~~~-~~~~ 173 (308)
.++|+|++||||||++..|.... .+..++... +....... ..+ +..+
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~Dl 218 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHM 218 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCE
Confidence 79999999999999999997531 111111111 11111000 001 2379
Q ss_pred EEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCC-------CEEEEeecC
Q 021750 174 YLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQI-------PMTLVFTKC 246 (308)
Q Consensus 174 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~-------pvivV~NK~ 246 (308)
+++||+|..... .. ....+.. +......+-.++|++++.........+..+....++ .-=+|+||.
T Consensus 219 VLIDTaG~~~~d--~~----l~e~La~-L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKl 291 (374)
T PRK14722 219 VLIDTIGMSQRD--RT----VSDQIAM-LHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKL 291 (374)
T ss_pred EEEcCCCCCccc--HH----HHHHHHH-HhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecc
Confidence 999999965211 11 1112222 122233334789999987655444323333322222 235788999
Q ss_pred CCCC
Q 021750 247 DKRK 250 (308)
Q Consensus 247 Dl~~ 250 (308)
|-..
T Consensus 292 DEt~ 295 (374)
T PRK14722 292 DEAS 295 (374)
T ss_pred ccCC
Confidence 9764
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.1e-05 Score=69.86 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=56.1
Q ss_pred CCccEEEEEEeCCCCCChhH-HHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEee
Q 021750 206 STLVSVFLLIDASIPAKPID-LEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTS 284 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~-~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS 284 (308)
..+|.+++|+++........ ..++..+...+++.+||+||+||.+.. .+..+.+... ..+.+++.+|
T Consensus 111 ANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~-------~~~~~~~~~~-----~~g~~Vi~vS 178 (356)
T PRK01889 111 ANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCEDA-------EEKIAEVEAL-----APGVPVLAVS 178 (356)
T ss_pred EeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCH-------HHHHHHHHHh-----CCCCcEEEEE
Confidence 44677999999874444322 234444556788999999999997531 1222233222 2357899999
Q ss_pred cCCCCCHHHHHHHHH
Q 021750 285 SVTNQGRDEILLHMA 299 (308)
Q Consensus 285 A~~g~gi~el~~~i~ 299 (308)
|+++.|+++|..++.
T Consensus 179 a~~g~gl~~L~~~L~ 193 (356)
T PRK01889 179 ALDGEGLDVLAAWLS 193 (356)
T ss_pred CCCCccHHHHHHHhh
Confidence 999999999998874
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.1e-05 Score=72.24 Aligned_cols=125 Identities=25% Similarity=0.279 Sum_probs=65.9
Q ss_pred chHHHHhhcCeEEcCCCCCcCCCch---h-hHHHHhCCCe--EEEeecccchhhh--hHHHhhc----------ccCCCC
Q 021750 58 PEPHVAISLEKLFVPPETEVSIDDS---S-LSTRILKGSN--IVLSKYARDAQVA--QAEFVKS----------SVRTED 119 (308)
Q Consensus 58 ~~~~~~~~~~~i~v~~gt~~~~~~~---~-~~~~~~~~~~--i~~~~~~~~~~~~--~~~f~~s----------~~~~~~ 119 (308)
..+.+++|+|.++|+....-..+.. + ++.....+.. |+++|.+...... ...+..- ......
T Consensus 105 ~~q~iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~g 184 (356)
T PRK01889 105 EEQLIAANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEG 184 (356)
T ss_pred cceeEEEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCcc
Confidence 3466789999988877775322221 2 2222233444 6777776532111 1111111 000000
Q ss_pred ------CCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcce--ecc----CCCCceEEEEEEEeCCCEEEecCCCccc
Q 021750 120 ------CPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLA--LTS----KTPGKTQCINHFRINDSWYLVDLPGYGY 183 (308)
Q Consensus 120 ------~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~--~~~----~~~~~t~~~~~~~~~~~~~liDtpG~~~ 183 (308)
....+ -.++++|.+|+|||||+|.|++..... .+. ....+|.....+.+.....++||||+.+
T Consensus 185 l~~L~~~L~~g-~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~ 259 (356)
T PRK01889 185 LDVLAAWLSGG-KTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRE 259 (356)
T ss_pred HHHHHHHhhcC-CEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhh
Confidence 00112 279999999999999999999854211 111 1112333333444445567889999854
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00012 Score=67.15 Aligned_cols=149 Identities=18% Similarity=0.187 Sum_probs=83.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCC---cceec-cCCCCceEE------------------EEEEE---------------
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRK---KLALT-SKTPGKTQC------------------INHFR--------------- 168 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~---~~~~~-~~~~~~t~~------------------~~~~~--------------- 168 (308)
|-.+|-|.=|+|||||+|.++... +++.. ..+-....+ +....
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 456788999999999999999853 22211 110000000 00111
Q ss_pred eCC-CEEEecCCCcccCCCchhhhhchHHHHH-HHHHhcCCccEEEEEEeCCCCCChhH---HHHHHHhccCCCCEEEEe
Q 021750 169 IND-SWYLVDLPGYGYAAAPRELRTDWDKFTK-DYFLNRSTLVSVFLLIDASIPAKPID---LEYASWLGQNQIPMTLVF 243 (308)
Q Consensus 169 ~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vl~viD~~~~~~~~~---~~l~~~~~~~~~pvivV~ 243 (308)
.++ ...++.|.|+.....- ...+.. .-+......+.++-|+|+........ ..+...+. ..-+||+
T Consensus 82 ~~~~D~ivIEtTGlA~P~pv------~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia---~AD~ivl 152 (323)
T COG0523 82 RDRPDRLVIETTGLADPAPV------IQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA---FADVIVL 152 (323)
T ss_pred cCCCCEEEEeCCCCCCCHHH------HHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH---hCcEEEE
Confidence 011 4778999998653211 111222 23344555678999999987654332 12233333 3348899
Q ss_pred ecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHH
Q 021750 244 TKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 244 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el 294 (308)
||.|+.+.. .++.+.+.+++..+ ..+++.+|. .+....++
T Consensus 153 NK~Dlv~~~---------~l~~l~~~l~~lnp-~A~i~~~~~-~~~~~~~l 192 (323)
T COG0523 153 NKTDLVDAE---------ELEALEARLRKLNP-RARIIETSY-GDVDLAEL 192 (323)
T ss_pred ecccCCCHH---------HHHHHHHHHHHhCC-CCeEEEccc-cCCCHHHh
Confidence 999999632 36666666665443 478888887 33344333
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00014 Score=62.18 Aligned_cols=115 Identities=27% Similarity=0.356 Sum_probs=59.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC-----Ccceecc-C--CC-------------CceEEEEE---------------EEeC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR-----KKLALTS-K--TP-------------GKTQCINH---------------FRIN 170 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~-----~~~~~~~-~--~~-------------~~t~~~~~---------------~~~~ 170 (308)
.|+++|++||||||.+-.|... ..+...+ + .. +....... ...+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 5899999999999999888752 1112111 1 11 11111000 0001
Q ss_pred -CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCC
Q 021750 171 -DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249 (308)
Q Consensus 171 -~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~ 249 (308)
..++++||||... ...+...++ +.++... ..+-+++|+|++......+ .+..+....+. -=++++|.|..
T Consensus 83 ~~D~vlIDT~Gr~~--~d~~~~~el----~~~~~~~-~~~~~~LVlsa~~~~~~~~-~~~~~~~~~~~-~~lIlTKlDet 153 (196)
T PF00448_consen 83 GYDLVLIDTAGRSP--RDEELLEEL----KKLLEAL-NPDEVHLVLSATMGQEDLE-QALAFYEAFGI-DGLILTKLDET 153 (196)
T ss_dssp TSSEEEEEE-SSSS--THHHHHHHH----HHHHHHH-SSSEEEEEEEGGGGGHHHH-HHHHHHHHSST-CEEEEESTTSS
T ss_pred CCCEEEEecCCcch--hhHHHHHHH----HHHhhhc-CCccceEEEecccChHHHH-HHHHHhhcccC-ceEEEEeecCC
Confidence 2699999999642 112211222 2333222 2234899999987644333 33344333333 35668999976
Q ss_pred C
Q 021750 250 K 250 (308)
Q Consensus 250 ~ 250 (308)
.
T Consensus 154 ~ 154 (196)
T PF00448_consen 154 A 154 (196)
T ss_dssp S
T ss_pred C
Confidence 4
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.1e-05 Score=66.77 Aligned_cols=126 Identities=20% Similarity=0.324 Sum_probs=73.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCccee--ccCCCCceEEEEEEEeC-----CCEEEecCCCcccCCCchh--------
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLAL--TSKTPGKTQCINHFRIN-----DSWYLVDLPGYGYAAAPRE-------- 189 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~--~~~~~~~t~~~~~~~~~-----~~~~liDtpG~~~~~~~~~-------- 189 (308)
.++|..||.+|.|||||+..|.+..+... ....|+.......+... -+++++||.|+++.-...+
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 46999999999999999999999764321 12233333333333332 1689999999976322111
Q ss_pred hhhchHHHHHHHH--------HhcCCccEEEEEEeCC-CCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 190 LRTDWDKFTKDYF--------LNRSTLVSVFLLIDAS-IPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 190 ~~~~~~~~~~~~~--------~~~~~~~~vl~viD~~-~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
+..+|...+.+-+ ..-..+++|+|.|.++ .+....++-.++.+. ....+|-|+-|.|....
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-skVNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SKVNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh-hhhhhHHHHHHhhhhhH
Confidence 1112222222111 1223456788888876 344444443333332 35677888899998754
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.91 E-value=7.7e-05 Score=62.34 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=34.0
Q ss_pred cEEEEEEeCCCCCChhHHHHHHH--hccCCCCEEEEeecCCCCC
Q 021750 209 VSVFLLIDASIPAKPIDLEYASW--LGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 209 ~~vl~viD~~~~~~~~~~~l~~~--~~~~~~pvivV~NK~Dl~~ 250 (308)
|+|++|+|+..+....+.++.+. +...++|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 57999999998877666666666 4456799999999999975
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00041 Score=67.19 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
-.|+|+|.+|+||||++..|..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988875
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0002 Score=66.47 Aligned_cols=134 Identities=12% Similarity=0.058 Sum_probs=78.8
Q ss_pred CCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCC---------hhH--
Q 021750 158 PGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAK---------PID-- 225 (308)
Q Consensus 158 ~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~---------~~~-- 225 (308)
|.++.....+.+++ .+.+||.+|.. ..++.|.+|+... ++|+||+|.++... ...
T Consensus 170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr----------~~R~kW~~~f~~v---~~IiFvvdlSd~d~~~~Ed~~~nrl~es 236 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQR----------SERKKWIHCFDNV---TAIIFCVALSEYDQVLEEDESTNRMQES 236 (342)
T ss_pred CccceEEEEEEECCeEEEEEecCCch----------hhhhhHHHHhCCC---CEEEEEEECcccccchhccCcchHHHHH
Confidence 33444445566665 78999999953 3445777877654 45999999986421 111
Q ss_pred H-HHHHHhc---cCCCCEEEEeecCCCCCcccCCC-----------C-CchhhHHHHHHHHHhhhc----CCCCEEEeec
Q 021750 226 L-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGG-----------K-RPEENLNDFQELIQGFFQ----TAPPWIMTSS 285 (308)
Q Consensus 226 ~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~----~~~~~~~vSA 285 (308)
. .+..++. -.+.|+++++||.|+....-... . ......+.+.+.+..... ..+-++.++|
T Consensus 237 l~~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a 316 (342)
T smart00275 237 LNLFESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCA 316 (342)
T ss_pred HHHHHHHHcCccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeee
Confidence 1 1222222 15799999999999865331110 0 011222223333322211 1244567889
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 021750 286 VTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 286 ~~g~gi~el~~~i~~~~~~ 304 (308)
.+-.++..+|+.+.+.+-.
T Consensus 317 ~Dt~~~~~v~~~v~~~I~~ 335 (342)
T smart00275 317 TDTRNIRVVFDAVKDIILQ 335 (342)
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 9999999999998887654
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00023 Score=65.46 Aligned_cols=135 Identities=12% Similarity=0.076 Sum_probs=79.3
Q ss_pred CCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCC---------hhH--
Q 021750 158 PGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAK---------PID-- 225 (308)
Q Consensus 158 ~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~---------~~~-- 225 (308)
+.++.....+.+++ .+.+||++|.. ..++.|.+|+.. +++|+||+|.++... ...
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~----------~~R~kW~~~f~~---v~~iifvv~lsd~d~~~~e~~~~nrl~es 213 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQR----------SERKKWIHCFED---VTAIIFVVALSEYDQVLFEDESTNRMQES 213 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCc----------ccchhHHHHhCC---CCEEEEEEEchhcccccccCCcchHHHHH
Confidence 33344444555555 79999999953 234477777764 445999999986421 111
Q ss_pred H-HHHHHhcc---CCCCEEEEeecCCCCCcccCC-------------CCCchhhHHHHHHHHHhhhc---CCCCEEEeec
Q 021750 226 L-EYASWLGQ---NQIPMTLVFTKCDKRKKKKNG-------------GKRPEENLNDFQELIQGFFQ---TAPPWIMTSS 285 (308)
Q Consensus 226 ~-~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~vSA 285 (308)
. .+..++.. .++|+++++||.|+....-.. ........+.+.+.+..... ..+-+..++|
T Consensus 214 l~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a 293 (317)
T cd00066 214 LNLFDSICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCA 293 (317)
T ss_pred HHHHHHHHhCccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccc
Confidence 1 11222221 579999999999976432110 00112222233333322211 2345567899
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 021750 286 VTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 286 ~~g~gi~el~~~i~~~~~~~ 305 (308)
.+-.++..+|+.+.+.+-..
T Consensus 294 ~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 294 TDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 99999999999998877553
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00011 Score=77.10 Aligned_cols=125 Identities=26% Similarity=0.329 Sum_probs=74.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcc-e-----eccCCCCceEEEEEEEeCCCEEEecCCCcccCC--Cchhhhhch
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKL-A-----LTSKTPGKTQCINHFRINDSWYLVDLPGYGYAA--APRELRTDW 194 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~-~-----~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~--~~~~~~~~~ 194 (308)
.+.|=-++||+||+||||++..- +.+|. . .....+| |+.+. .-+.++-+++||.|--... .+..-+..|
T Consensus 123 yeLPWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~cd-wwf~deaVlIDtaGry~~q~s~~~~~~~~W 199 (1188)
T COG3523 123 YELPWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNCD-WWFTDEAVLIDTAGRYITQDSADEVDRAEW 199 (1188)
T ss_pred hcCCceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC-CcccC-cccccceEEEcCCcceecccCcchhhHHHH
Confidence 44566789999999999987643 22221 1 1122334 44444 3346688999999953322 222222334
Q ss_pred HHH---HHHHHHhcCCccEEEEEEeCCCCCChhHHHH---H----HHhc------cCCCCEEEEeecCCCCCc
Q 021750 195 DKF---TKDYFLNRSTLVSVFLLIDASIPAKPIDLEY---A----SWLG------QNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 195 ~~~---~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l---~----~~~~------~~~~pvivV~NK~Dl~~~ 251 (308)
..+ ++. ++.+..+++|++.+|..+-.+....+. . ..+. ....|+++++||.|+...
T Consensus 200 ~~fL~lLkk-~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 200 LGFLGLLKK-YRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHHHHH-hccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 433 222 366677888999999875443222111 1 1111 268999999999999864
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00035 Score=64.80 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
++-.+|.|.-|+|||||+|+++..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 4 IPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 456789999999999999999864
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00019 Score=60.90 Aligned_cols=129 Identities=16% Similarity=0.154 Sum_probs=68.2
Q ss_pred CCCEEEecCCCcccC--CCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHH------HHHhccCCCCEEE
Q 021750 170 NDSWYLVDLPGYGYA--AAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEY------ASWLGQNQIPMTL 241 (308)
Q Consensus 170 ~~~~~liDtpG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l------~~~~~~~~~pviv 241 (308)
++.+.++|+||.++- +.+ -+..+.++.-. ..--..++|++|+.--. ...+.+ +..+.....|.|=
T Consensus 97 eddylifDcPGQIELytH~p-----Vm~~iv~hl~~-~~F~~c~Vylldsqf~v-D~~KfiSG~lsAlsAMi~lE~P~IN 169 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLP-----VMPQIVEHLKQ-WNFNVCVVYLLDSQFLV-DSTKFISGCLSALSAMISLEVPHIN 169 (273)
T ss_pred cCCEEEEeCCCeeEEeecCh-----hHHHHHHHHhc-ccCceeEEEEeccchhh-hHHHHHHHHHHHHHHHHHhcCcchh
Confidence 447999999998762 221 12223333211 11112478888875211 111111 1111235799999
Q ss_pred EeecCCCCCcccCCC----------------CC--chhhHHHHHHHHHhhhcC--CCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 242 VFTKCDKRKKKKNGG----------------KR--PEENLNDFQELIQGFFQT--APPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 242 V~NK~Dl~~~~~~~~----------------~~--~~~~~~~~~~~~~~~~~~--~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
|++|+||.+...... .. ......++.+.+...... -+.+++.-....+.++.++.+|...
T Consensus 170 vlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~a 249 (273)
T KOG1534|consen 170 VLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDA 249 (273)
T ss_pred hhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHH
Confidence 999999987632000 00 000122233333322221 2677888888888888888888776
Q ss_pred HHHH
Q 021750 302 RNYW 305 (308)
Q Consensus 302 ~~~~ 305 (308)
+...
T Consensus 250 iQy~ 253 (273)
T KOG1534|consen 250 IQYG 253 (273)
T ss_pred HHhc
Confidence 6543
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00025 Score=66.37 Aligned_cols=117 Identities=22% Similarity=0.320 Sum_probs=61.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC-----CcceeccCCC----------------CceEEEE-----------EEEe--C
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR-----KKLALTSKTP----------------GKTQCIN-----------HFRI--N 170 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~-----~~~~~~~~~~----------------~~t~~~~-----------~~~~--~ 170 (308)
...|+|+|++||||||++..|... ......+..+ +...... .+.. +
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 458999999999999999999742 1112111111 1111100 0000 1
Q ss_pred CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 171 DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 171 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
..++++||+|..... .+ .+..+ ..++... ..+.+++|+|++...... .++...+...+ .-=+|++|.|-..
T Consensus 321 ~DvVLIDTaGRs~kd--~~---lm~EL-~~~lk~~-~PdevlLVLsATtk~~d~-~~i~~~F~~~~-idglI~TKLDET~ 391 (436)
T PRK11889 321 VDYILIDTAGKNYRA--SE---TVEEM-IETMGQV-EPDYICLTLSASMKSKDM-IEIITNFKDIH-IDGIVFTKFDETA 391 (436)
T ss_pred CCEEEEeCccccCcC--HH---HHHHH-HHHHhhc-CCCeEEEEECCccChHHH-HHHHHHhcCCC-CCEEEEEcccCCC
Confidence 278999999964311 12 11112 2222222 234578999987543322 23344444322 3457889999765
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00052 Score=65.10 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
-.|+|+|++||||||++..|.+
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998865
|
|
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00073 Score=62.22 Aligned_cols=128 Identities=15% Similarity=0.093 Sum_probs=71.0
Q ss_pred EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCCh--hH---------HHHHHHh
Q 021750 165 NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP--ID---------LEYASWL 232 (308)
Q Consensus 165 ~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~--~~---------~~l~~~~ 232 (308)
..+.+.+ .+.++|.+|.. ..++-|.+.+.. +++|+||++.+.-... .+ +.+.+.+
T Consensus 188 ~~F~~k~~~f~~~DvGGQR----------seRrKWihcFe~---v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI 254 (354)
T KOG0082|consen 188 VEFTIKGLKFRMFDVGGQR----------SERKKWIHCFED---VTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESI 254 (354)
T ss_pred EEEEeCCCceEEEeCCCcH----------HHhhhHHHhhcC---CCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHH
Confidence 3444444 78999999953 112244455544 4459999998753221 11 1222211
Q ss_pred cc----CCCCEEEEeecCCCCCcccCC-----------CC-CchhhHHHHHHHHHhhhc---CCCCEEEeecCCCCCHHH
Q 021750 233 GQ----NQIPMTLVFTKCDKRKKKKNG-----------GK-RPEENLNDFQELIQGFFQ---TAPPWIMTSSVTNQGRDE 293 (308)
Q Consensus 233 ~~----~~~pvivV~NK~Dl~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~~---~~~~~~~vSA~~g~gi~e 293 (308)
-. .+.++|+.+||.|+....-.. +. ..++....+...+..... ...-+..+.|.+-.+|+.
T Consensus 255 ~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~ 334 (354)
T KOG0082|consen 255 CNNKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQF 334 (354)
T ss_pred hcCcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHH
Confidence 11 578999999999987543210 00 111222222222222211 123345568888899999
Q ss_pred HHHHHHHHHHHH
Q 021750 294 ILLHMAQLRNYW 305 (308)
Q Consensus 294 l~~~i~~~~~~~ 305 (308)
+|+++.+.+.+.
T Consensus 335 vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 335 VFDAVTDTIIQN 346 (354)
T ss_pred HHHHHHHHHHHH
Confidence 999998877653
|
|
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00016 Score=66.77 Aligned_cols=155 Identities=17% Similarity=0.203 Sum_probs=90.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcc-----------------------eecc------CCCCceEEE--EEEEeC-C
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKL-----------------------ALTS------KTPGKTQCI--NHFRIN-D 171 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~-----------------------~~~~------~~~~~t~~~--~~~~~~-~ 171 (308)
...+++++|.-.+||||+-..|.....+ ...- ..-|.|..+ ..+... .
T Consensus 78 ~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~ 157 (501)
T KOG0459|consen 78 EHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENK 157 (501)
T ss_pred CCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecce
Confidence 3459999999999999988777642100 0000 111233332 233333 3
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCCh-------hHHHHHHHhcc-CCCCEEEEe
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP-------IDLEYASWLGQ-NQIPMTLVF 243 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~-------~~~~l~~~~~~-~~~pvivV~ 243 (308)
++++.|+||.-. +...++..+..+|+-++|+.+..+... +..+...+... .-...|+++
T Consensus 158 ~ftiLDApGHk~-------------fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~v 224 (501)
T KOG0459|consen 158 RFTILDAPGHKS-------------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLI 224 (501)
T ss_pred eEEeeccCcccc-------------cchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEE
Confidence 799999999642 455666677777878888888543211 11121222222 235678999
Q ss_pred ecCCCCCcccCCCCCchhhHHHHHHHHHhhhc-------CCCCEEEeecCCCCCHHHHHH
Q 021750 244 TKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ-------TAPPWIMTSSVTNQGRDEILL 296 (308)
Q Consensus 244 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~vSA~~g~gi~el~~ 296 (308)
||+|-+..+= ..+..++..+.+..++. ....++++|..+|.++.+...
T Consensus 225 NKMddPtvnW-----s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 225 NKMDDPTVNW-----SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred EeccCCccCc-----chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 9999775331 23333333333332221 447899999999999987653
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0015 Score=53.32 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..+|++.|+|||||||++.++.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH
Confidence 35999999999999999999885
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00052 Score=63.18 Aligned_cols=93 Identities=20% Similarity=0.181 Sum_probs=69.8
Q ss_pred HHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 196 KFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 196 ~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
+++++........|+|+.|+|+..+.......+.++... +|.++|+||+|+.+. ...+.|.+.+....
T Consensus 23 k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~--k~~i~vlNK~DL~~~---------~~~~~W~~~~~~~~- 90 (322)
T COG1161 23 KAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKE--KPKLLVLNKADLAPK---------EVTKKWKKYFKKEE- 90 (322)
T ss_pred HHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHcc--CCcEEEEehhhcCCH---------HHHHHHHHHHHhcC-
Confidence 455666666677788999999999988887777777764 556999999999863 33667777666543
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
....+.++++.+.+...+...+..+
T Consensus 91 -~~~~~~v~~~~~~~~~~i~~~~~~~ 115 (322)
T COG1161 91 -GIKPIFVSAKSRQGGKKIRKALEKL 115 (322)
T ss_pred -CCccEEEEeecccCccchHHHHHHH
Confidence 3567889999998888877555433
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00028 Score=57.48 Aligned_cols=20 Identities=30% Similarity=0.672 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 021750 128 FALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~ 147 (308)
|+++|.+|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999998876
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0011 Score=66.95 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-|+|+|+.||||||++..|.+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 689999999999999999986
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0033 Score=59.16 Aligned_cols=118 Identities=18% Similarity=0.142 Sum_probs=60.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC---------CcceeccCC----------------CCceEEEEEE---------Ee-
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR---------KKLALTSKT----------------PGKTQCINHF---------RI- 169 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~---------~~~~~~~~~----------------~~~t~~~~~~---------~~- 169 (308)
...|+++|++||||||.+..|... ..+..++-. .+........ ..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 347999999999999999888642 111111111 1111111000 01
Q ss_pred CCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCC
Q 021750 170 NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249 (308)
Q Consensus 170 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~ 249 (308)
+..++++||+|.... ... .+. -+..++.....-.-+++|+|++....... ++...+... .+-=+|+||.|-.
T Consensus 254 ~~DlVLIDTaGr~~~--~~~---~l~-el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~-~~~~~I~TKlDet 325 (388)
T PRK12723 254 DFDLVLVDTIGKSPK--DFM---KLA-EMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPF-SYKTVIFTKLDET 325 (388)
T ss_pred CCCEEEEcCCCCCcc--CHH---HHH-HHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCC-CCCEEEEEeccCC
Confidence 226999999996421 111 111 12233332222224899999987643333 222222211 2345788999976
Q ss_pred C
Q 021750 250 K 250 (308)
Q Consensus 250 ~ 250 (308)
.
T Consensus 326 ~ 326 (388)
T PRK12723 326 T 326 (388)
T ss_pred C
Confidence 4
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00076 Score=64.43 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
....|+++|.+|+||||++..|..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999988864
|
|
| >PF01018 GTP1_OBG: GTP1/OBG; InterPro: IPR006169 Several proteins have recently been shown to contain the 5 structural motifs characteristic of GTP-binding proteins [] | Back alignment and domain information |
|---|
Probab=97.49 E-value=1.5e-05 Score=65.15 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=32.5
Q ss_pred hhcCe-EEcCCCCCcCCCchh--hHHHHhCCCeEEEeecccchhhhhHHHhhcccCCCCCCCCC
Q 021750 64 ISLEK-LFVPPETEVSIDDSS--LSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDG 124 (308)
Q Consensus 64 ~~~~~-i~v~~gt~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~ 124 (308)
..-|. |.||+||.+.+.++. +.++..+++++++|+|+.++ .+|..|.++.++.|..+..+
T Consensus 80 ~G~dl~i~VP~GT~V~~~~~~~~l~Dl~~~g~~~lvArGG~GG-~GN~~f~s~~~~~P~~~~~G 142 (156)
T PF01018_consen 80 NGKDLIIKVPVGTVVYDADTGELLADLTEPGQRFLVARGGRGG-LGNAHFKSSTNRAPRFATPG 142 (156)
T ss_dssp ----EEEEE-TTEEEEETTT--EEEEE-STT-EEEEE---------GGGC-BTTCSS--EEE--
T ss_pred CCCccEeeecCCcEEEeeccccchheeecccceeEEecCCCCc-cccccccCCCCCCCCccCCC
Confidence 33344 999999999985554 55667778899999999986 99999999999888765544
|
These include murine DRG protein; GTP1 protein from Schizosaccharomyces pombe; OBG protein from Bacillus subtilis; and several others. Although the proteins contain GTP-binding motifs and are similar to each other, they do not share sequence similarity to other GTP-binding proteins, and have thus been classed as a novel group, the GTP1/OBG family. As yet, the functions of these proteins is uncertain, but they have been shown to be important in development and normal cell metabolism [, ].; GO: 0005525 GTP binding; PDB: 1LNZ_A 1UDX_A. |
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.003 Score=60.30 Aligned_cols=117 Identities=23% Similarity=0.259 Sum_probs=59.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC-------CcceeccCCCC----------------ceEEE-EEE--------E-eCCC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR-------KKLALTSKTPG----------------KTQCI-NHF--------R-INDS 172 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~-------~~~~~~~~~~~----------------~t~~~-~~~--------~-~~~~ 172 (308)
..++|+|++||||||++..|... ..+..++..+. ..... ... . .+..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 37999999999999988777531 12222222111 01100 000 0 1236
Q ss_pred EEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 173 WYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 173 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
++++||||..... .... ..+..++.....-+-+++|++++....... ++...+...+ +--+|+||+|-..
T Consensus 302 lVlIDt~G~~~~d--~~~~----~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~-~~~~~f~~~~-~~~vI~TKlDet~ 371 (424)
T PRK05703 302 VILIDTAGRSQRD--KRLI----EELKALIEFSGEPIDVYLVLSATTKYEDLK-DIYKHFSRLP-LDGLIFTKLDETS 371 (424)
T ss_pred EEEEeCCCCCCCC--HHHH----HHHHHHHhccCCCCeEEEEEECCCCHHHHH-HHHHHhCCCC-CCEEEEecccccc
Confidence 8999999974311 1111 122333331111134788899875432222 3333343322 2358899999754
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00062 Score=62.53 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+|-.+|.|.-|+|||||+|+++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 3567889999999999999999864
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.002 Score=62.19 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-++|+|++||||||++..|..
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 699999999999999999986
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0011 Score=62.68 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=60.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC------cceeccC----------------CCCceEEEE--------EEE-eCCCEEE
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK------KLALTSK----------------TPGKTQCIN--------HFR-INDSWYL 175 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~------~~~~~~~----------------~~~~t~~~~--------~~~-~~~~~~l 175 (308)
-++++|++||||||++..|.... .+..++- ..+...... .+. .+..+++
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~VL 304 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELIL 304 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEEE
Confidence 58899999999999999997521 1111111 111111100 000 1237899
Q ss_pred ecCCCcccCCCchhhhhchHHHHHHHHHhc--CCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 176 VDLPGYGYAAAPRELRTDWDKFTKDYFLNR--STLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 176 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
+||||..... ...-..+ ..++... ....-+++|+|++....... ++...+...+ +-=+|++|.|-..
T Consensus 305 IDTaGr~~rd--~~~l~eL----~~~~~~~~~~~~~e~~LVLsAt~~~~~~~-~~~~~f~~~~-~~glIlTKLDEt~ 373 (432)
T PRK12724 305 IDTAGYSHRN--LEQLERM----QSFYSCFGEKDSVENLLVLSSTSSYHHTL-TVLKAYESLN-YRRILLTKLDEAD 373 (432)
T ss_pred EeCCCCCccC--HHHHHHH----HHHHHhhcCCCCCeEEEEEeCCCCHHHHH-HHHHHhcCCC-CCEEEEEcccCCC
Confidence 9999974211 1111122 2222221 11124789999987643332 2333333322 3457889999764
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0062 Score=50.73 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
+|+|+|.+|+|||||+..+.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999765
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00084 Score=64.03 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=18.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..-|+++|.+|+||||++..|..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHH
Confidence 34789999999999997666653
|
|
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0014 Score=61.39 Aligned_cols=153 Identities=18% Similarity=0.239 Sum_probs=81.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceec----------c----CCCCceE----------EEEEEEeCC----CEE
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALT----------S----KTPGKTQ----------CINHFRIND----SWY 174 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~----------~----~~~~~t~----------~~~~~~~~~----~~~ 174 (308)
.|..-|++||+--+||||||.+|...-..+.. . ...|.|. ....+.+++ ++.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 56678999999999999999999863111110 0 0112111 112233332 688
Q ss_pred EecCCCcccC-CCchhhh-------hchH----HHHHHHHHh------cCCccEEEEEEeCCCCCC------hhHHHHHH
Q 021750 175 LVDLPGYGYA-AAPRELR-------TDWD----KFTKDYFLN------RSTLVSVFLLIDASIPAK------PIDLEYAS 230 (308)
Q Consensus 175 liDtpG~~~~-~~~~~~~-------~~~~----~~~~~~~~~------~~~~~~vl~viD~~~~~~------~~~~~l~~ 230 (308)
++|+-|+.-. ..+.... ..|. .|....-.. -..-.+++.-.|.+-..- ..+.+...
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 9999997432 2221100 0010 011110000 111236777778774321 11224455
Q ss_pred HhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCC
Q 021750 231 WLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVT 287 (308)
Q Consensus 231 ~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~ 287 (308)
.+...++|+++++|-.+=.. +...++++.+.+.+ .++++++++..
T Consensus 175 ELk~igKPFvillNs~~P~s----------~et~~L~~eL~ekY--~vpVlpvnc~~ 219 (492)
T PF09547_consen 175 ELKEIGKPFVILLNSTKPYS----------EETQELAEELEEKY--DVPVLPVNCEQ 219 (492)
T ss_pred HHHHhCCCEEEEEeCCCCCC----------HHHHHHHHHHHHHh--CCcEEEeehHH
Confidence 66678999999999887432 22445555555443 37888888753
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00067 Score=63.31 Aligned_cols=117 Identities=26% Similarity=0.291 Sum_probs=62.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCC-------cceecc-CC---------------CCceEEEEE----EE------eCC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRK-------KLALTS-KT---------------PGKTQCINH----FR------IND 171 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~-------~~~~~~-~~---------------~~~t~~~~~----~~------~~~ 171 (308)
...|+|||++||||||-+-.|.... .+++.+ ++ -+....+.. +. -+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 3479999999999999888776531 122211 11 111111100 00 123
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
+++++||.|..... .. ..+-++.|+..... .-+++|++++....... ++...+...+.. =+++||.|-..
T Consensus 283 d~ILVDTaGrs~~D--~~----~i~el~~~~~~~~~-i~~~Lvlsat~K~~dlk-ei~~~f~~~~i~-~~I~TKlDET~ 352 (407)
T COG1419 283 DVILVDTAGRSQYD--KE----KIEELKELIDVSHS-IEVYLVLSATTKYEDLK-EIIKQFSLFPID-GLIFTKLDETT 352 (407)
T ss_pred CEEEEeCCCCCccC--HH----HHHHHHHHHhcccc-ceEEEEEecCcchHHHH-HHHHHhccCCcc-eeEEEcccccC
Confidence 79999999964311 11 12234455554433 34789999886433322 334444332222 46789999664
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0023 Score=53.22 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=37.3
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
.++++||||.... ..+ +...+..+ ......+.+++|+|+.......+ ....+....+ ..-+|+||+|....
T Consensus 84 d~viiDt~g~~~~--~~~----~l~~l~~l-~~~~~~~~~~lVv~~~~~~~~~~-~~~~~~~~~~-~~~viltk~D~~~~ 154 (173)
T cd03115 84 DVVIVDTAGRLQI--DEN----LMEELKKI-KRVVKPDEVLLVVDAMTGQDAVN-QAKAFNEALG-ITGVILTKLDGDAR 154 (173)
T ss_pred CEEEEECcccchh--hHH----HHHHHHHH-HhhcCCCeEEEEEECCCChHHHH-HHHHHHhhCC-CCEEEEECCcCCCC
Confidence 5899999996421 111 11111222 11222456899999865433222 2222222333 35678899997754
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00072 Score=64.74 Aligned_cols=154 Identities=12% Similarity=0.132 Sum_probs=89.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC--C-EEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND--S-WYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~-~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.|++|||..++|||+|+.+++...+...-++.. .+....+..++ + +.+-|-.|.. ..+|.
T Consensus 31 lk~givg~~~sgktalvhr~ltgty~~~e~~e~--~~~kkE~vv~gqs~lLlirdeg~~~---------------~aQft 93 (749)
T KOG0705|consen 31 LKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG--GRFKKEVVVDGQSHLLLIRDEGGHP---------------DAQFC 93 (749)
T ss_pred hheeeeecccCCceeeeeeeccceeccccCCcC--ccceeeEEeeccceEeeeecccCCc---------------hhhhh
Confidence 489999999999999999998876543333332 23333333333 2 3444554411 11232
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHH-----HHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEY-----ASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l-----~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
.. +|.+++|+...+..+++..+. ..+.....+|+++++++- ........ .+.+.....+.... ..
T Consensus 94 ~w---vdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd-~iS~~~~r-v~~da~~r~l~~~~-----kr 163 (749)
T KOG0705|consen 94 QW---VDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQD-HISAKRPR-VITDDRARQLSAQM-----KR 163 (749)
T ss_pred hh---ccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcc-hhhccccc-ccchHHHHHHHHhc-----Cc
Confidence 33 334788887776666554322 222234678888888873 33222111 01222222222222 13
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
+.+|+.+|.+|-++...|+.++..+...+
T Consensus 164 csy~et~atyGlnv~rvf~~~~~k~i~~~ 192 (749)
T KOG0705|consen 164 CSYYETCATYGLNVERVFQEVAQKIVQLR 192 (749)
T ss_pred cceeecchhhhhhHHHHHHHHHHHHHHHH
Confidence 78999999999999999999887765443
|
|
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00037 Score=60.12 Aligned_cols=79 Identities=24% Similarity=0.249 Sum_probs=41.5
Q ss_pred CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCC---CCCChhHHHHHHH--hccCCCCEEEEeec
Q 021750 171 DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS---IPAKPIDLEYASW--LGQNQIPMTLVFTK 245 (308)
Q Consensus 171 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~---~~~~~~~~~l~~~--~~~~~~pvivV~NK 245 (308)
+.+.++|+||..+--..+. ...++.+. +...+--.+++-++|+- ++......-+... +-....|-+=|+.|
T Consensus 97 ~~Y~lFDcPGQVELft~h~---~l~~I~~~-Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK 172 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHD---SLNKIFRK-LEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSK 172 (290)
T ss_pred CcEEEEeCCCcEEEEeccc---hHHHHHHH-HHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhH
Confidence 4799999999876211111 12223322 22222223467778874 3322222111111 11256888999999
Q ss_pred CCCCCccc
Q 021750 246 CDKRKKKK 253 (308)
Q Consensus 246 ~Dl~~~~~ 253 (308)
+|+...-.
T Consensus 173 ~Dl~~~yg 180 (290)
T KOG1533|consen 173 ADLLKKYG 180 (290)
T ss_pred hHHHHhhc
Confidence 99986543
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0038 Score=58.30 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
...++++|++||||||++..|..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999875
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.006 Score=58.23 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=18.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..-|+++|.+|+||||++..|..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHH
Confidence 34788999999999999665543
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0051 Score=55.11 Aligned_cols=117 Identities=22% Similarity=0.290 Sum_probs=61.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC-----CcceeccCCC----------------CceEEEEE-----------E-Ee-C
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR-----KKLALTSKTP----------------GKTQCINH-----------F-RI-N 170 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~-----~~~~~~~~~~----------------~~t~~~~~-----------~-~~-~ 170 (308)
..+++++|.+|+||||++..+... .....++..+ +....... . .. +
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 359999999999999999888653 1111111100 11111000 0 00 1
Q ss_pred CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 171 DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 171 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
..++++||||..... .+.-.+ + ..++... ..+.+++|+|++....... ++.+.+.. -.+-=+++||.|-..
T Consensus 155 ~D~ViIDt~Gr~~~~--~~~l~e---l-~~~~~~~-~~~~~~LVl~a~~~~~d~~-~~~~~f~~-~~~~~~I~TKlDet~ 225 (270)
T PRK06731 155 VDYILIDTAGKNYRA--SETVEE---M-IETMGQV-EPDYICLTLSASMKSKDMI-EIITNFKD-IHIDGIVFTKFDETA 225 (270)
T ss_pred CCEEEEECCCCCcCC--HHHHHH---H-HHHHhhh-CCCeEEEEEcCccCHHHHH-HHHHHhCC-CCCCEEEEEeecCCC
Confidence 278999999964211 221112 2 2222222 2234899999875433222 23333333 233457889999765
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0018 Score=59.88 Aligned_cols=68 Identities=18% Similarity=0.109 Sum_probs=51.8
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc--cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG--QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~--~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
+++.......|+|+.|+|+.++......+..+++. ..++..|+|+||+|++ +.+.++.|...++..++
T Consensus 138 ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLV---------PrEv~e~Wl~YLr~~~p 207 (435)
T KOG2484|consen 138 KEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLV---------PREVVEKWLVYLRREGP 207 (435)
T ss_pred HHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccC---------CHHHHHHHHHHHHhhCC
Confidence 33334455667899999999998877666666663 2348999999999998 56678999999987654
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0017 Score=61.86 Aligned_cols=79 Identities=14% Similarity=0.125 Sum_probs=58.7
Q ss_pred HHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc--CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 197 FTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ--NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 197 ~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~--~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
+|++..+.....|+|+.++|+.++.-+....+..++.+ ..+..++++||.||.. .+....|.+.+.+.
T Consensus 164 ~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~---------~~qr~aWa~YF~~~- 233 (562)
T KOG1424|consen 164 IWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLP---------PEQRVAWAEYFRQN- 233 (562)
T ss_pred HHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCC---------HHHHHHHHHHHHhc-
Confidence 56665566666678999999999977666666677764 4577899999999985 34456666666543
Q ss_pred cCCCCEEEeecCC
Q 021750 275 QTAPPWIMTSSVT 287 (308)
Q Consensus 275 ~~~~~~~~vSA~~ 287 (308)
.+++++.||..
T Consensus 234 --ni~~vf~SA~~ 244 (562)
T KOG1424|consen 234 --NIPVVFFSALA 244 (562)
T ss_pred --CceEEEEeccc
Confidence 48999999987
|
|
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0024 Score=55.43 Aligned_cols=116 Identities=19% Similarity=0.188 Sum_probs=60.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-C--CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-D--SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.|+|.++|..-+||||+-.....+- .+.-+.....|.....-.+. . .+.+||.||....-.+.- .+. ..
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkM-sPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~---D~e----~i 98 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKM-SPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSF---DYE----MI 98 (347)
T ss_pred CceEEEEeecccCcchhhheeeecc-CCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCcc---CHH----HH
Confidence 3689999999999999766555431 11111111111111000111 1 588999999754221111 111 11
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCc
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~ 251 (308)
++. .++ ++||+|+.+.....-..+..... ..++.+=+.+.|.|-...
T Consensus 99 F~~-~gA--LifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 99 FRG-VGA--LIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred Hhc-cCe--EEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 222 333 89999997532221112222221 256778889999997654
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0078 Score=55.81 Aligned_cols=98 Identities=11% Similarity=0.093 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc--CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 195 DKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ--NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 195 ~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~--~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
.++|.+.|...+..|+++-|+|+.++.......+..++.. ..+-+|+|+|||||+.. -....|...+..
T Consensus 201 kRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPt---------wvt~~Wv~~lSk 271 (572)
T KOG2423|consen 201 KRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPT---------WVTAKWVRHLSK 271 (572)
T ss_pred hHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccH---------HHHHHHHHHHhh
Confidence 4588888888899999999999999887666666666653 56789999999999853 334555555554
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+ .-.|..|-....|-..|++.+.++..
T Consensus 272 eyP--TiAfHAsi~nsfGKgalI~llRQf~k 300 (572)
T KOG2423|consen 272 EYP--TIAFHASINNSFGKGALIQLLRQFAK 300 (572)
T ss_pred hCc--ceeeehhhcCccchhHHHHHHHHHHh
Confidence 322 22344555556677767766666543
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.008 Score=48.20 Aligned_cols=99 Identities=14% Similarity=0.220 Sum_probs=52.4
Q ss_pred EEcCCCCCHHHHHHHHhcCC-----cceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHh
Q 021750 130 LVGRSNVGKSSLLNSLVRRK-----KLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 130 lvG~~~vGKSSLin~l~~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 204 (308)
.-|.+|+|||++.-.+...- ........++.. ..+..++++|+|+... ......+..
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~------~~~yd~VIiD~p~~~~------------~~~~~~l~~ 66 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLA------NLDYDYIIIDTGAGIS------------DNVLDFFLA 66 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCC------CCCCCEEEEECCCCCC------------HHHHHHHHh
Confidence 44789999999877775421 111111111100 0124789999987421 022233333
Q ss_pred cCCccEEEEEEeCCCCCChhHHHHHHHhcc--CCCCEEEEeecCCCC
Q 021750 205 RSTLVSVFLLIDASIPAKPIDLEYASWLGQ--NQIPMTLVFTKCDKR 249 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~~~~~l~~~~~~--~~~pvivV~NK~Dl~ 249 (308)
+ |.++++++.+...-..-....+++.. ...++.+|+|+++..
T Consensus 67 a---D~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 67 A---DEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred C---CeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 3 44888888874322111223333322 345778999999743
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0043 Score=53.76 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=32.8
Q ss_pred CCccEEEEEEeCCCCCChhHHHHHHHhccCC-CCEEEEeecCCCC
Q 021750 206 STLVSVFLLIDASIPAKPIDLEYASWLGQNQ-IPMTLVFTKCDKR 249 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~-~pvivV~NK~Dl~ 249 (308)
..+|.++.|+|++...-....++.++..+.+ +++.+|+||+|-.
T Consensus 154 ~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 154 EGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 4567899999998644344445666777777 9999999999954
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0035 Score=57.06 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=78.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCC-----ccee----------------ccCCCCceEE-------EEEEEe------
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRK-----KLAL----------------TSKTPGKTQC-------INHFRI------ 169 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~-----~~~~----------------~~~~~~~t~~-------~~~~~~------ 169 (308)
.+.-|.++|-.|+||||-|..|...- .... .....|.... ...+-+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 35688999999999999998887521 1000 0001111111 000000
Q ss_pred ---CCCEEEecCCCcccCCCchhhhhchHHHHHHHHHh-cCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeec
Q 021750 170 ---NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN-RSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTK 245 (308)
Q Consensus 170 ---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK 245 (308)
+-.++++||+|-. +....+-.++.++.+-.-.. ....+-+++++|++.+...... .+.+.+.-.--=++++|
T Consensus 218 kar~~DvvliDTAGRL--hnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~Q--Ak~F~eav~l~GiIlTK 293 (340)
T COG0552 218 KARGIDVVLIDTAGRL--HNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQ--AKIFNEAVGLDGIILTK 293 (340)
T ss_pred HHcCCCEEEEeCcccc--cCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHH--HHHHHHhcCCceEEEEe
Confidence 2269999999943 32233333333333221000 0111237888899987655442 23333211123468899
Q ss_pred CCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHH
Q 021750 246 CDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLH 297 (308)
Q Consensus 246 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~ 297 (308)
+|-..... .+-.+...++ .|+.++-. |+++++|...
T Consensus 294 lDgtAKGG--------~il~I~~~l~------~PI~fiGv--GE~~~DL~~F 329 (340)
T COG0552 294 LDGTAKGG--------IILSIAYELG------IPIKFIGV--GEGYDDLRPF 329 (340)
T ss_pred cccCCCcc--------eeeeHHHHhC------CCEEEEeC--CCChhhcccc
Confidence 99443221 1223333443 67777754 7888877543
|
|
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0025 Score=42.67 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=20.9
Q ss_pred cEEEEEEeCCCCCC--hhH-HHHHHHhc-c-CCCCEEEEeecCC
Q 021750 209 VSVFLLIDASIPAK--PID-LEYASWLG-Q-NQIPMTLVFTKCD 247 (308)
Q Consensus 209 ~~vl~viD~~~~~~--~~~-~~l~~~~~-~-~~~pvivV~NK~D 247 (308)
++|+|++|.+.... ..+ ..+.+.+. . .++|+++|+||+|
T Consensus 15 ~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 15 DAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred ceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 35999999986433 222 12223222 2 3899999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0088 Score=53.94 Aligned_cols=80 Identities=15% Similarity=0.222 Sum_probs=51.8
Q ss_pred EEEEEeCCCCCChhHH--HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCC
Q 021750 211 VFLLIDASIPAKPIDL--EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTN 288 (308)
Q Consensus 211 vl~viD~~~~~~~~~~--~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g 288 (308)
+++|+.+..+.-.... .++-.+...++.-+||+||+||....+ ... +++...+. ..+.+++.+|++++
T Consensus 83 ~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~------~~~-~~~~~~y~---~~gy~v~~~s~~~~ 152 (301)
T COG1162 83 AIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEE------AAV-KELLREYE---DIGYPVLFVSAKNG 152 (301)
T ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchH------HHH-HHHHHHHH---hCCeeEEEecCcCc
Confidence 5666666555332221 334444567888889999999997542 111 23333333 23588999999999
Q ss_pred CCHHHHHHHHHH
Q 021750 289 QGRDEILLHMAQ 300 (308)
Q Consensus 289 ~gi~el~~~i~~ 300 (308)
+|++++.+++..
T Consensus 153 ~~~~~l~~~l~~ 164 (301)
T COG1162 153 DGLEELAELLAG 164 (301)
T ss_pred ccHHHHHHHhcC
Confidence 999999988753
|
|
| >PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II [] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0027 Score=56.94 Aligned_cols=159 Identities=16% Similarity=0.223 Sum_probs=74.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
|=|++.|.|++||||+.+.|... + . . .+.. +..+. +..+. ++---+.........+..+.......+ ..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~-~-~--~--~~~~--v~~i~-~~~~~-~~~~~y~~~~~Ek~~R~~l~s~v~r~l-s~ 70 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY-L-E--E--KGKE--VVIIS-DDSLG-IDRNDYADSKKEKEARGSLKSAVERAL-SK 70 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH-H-H--H--TT----EEEE--THHHH--TTSSS--GGGHHHHHHHHHHHHHHHH-TT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH-H-H--h--cCCE--EEEEc-ccccc-cchhhhhchhhhHHHHHHHHHHHHHhh-cc
Confidence 45899999999999999999873 1 1 1 1111 11111 00010 111111111111112222222333322 22
Q ss_pred CCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCccc------CCCCCchhhHHHHHHHHHhh---hcC
Q 021750 206 STLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKK------NGGKRPEENLNDFQELIQGF---FQT 276 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~---~~~ 276 (308)
+ -++++|...-......++.......+.+..+|..++++..... ....+.++.++.+...+..- ..|
T Consensus 71 ~----~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P~~~nrW 146 (270)
T PF08433_consen 71 D----TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEEPDPKNRW 146 (270)
T ss_dssp -----SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---TTSS-GG
T ss_pred C----eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcCCCCCCCc
Confidence 2 3567899887877888888888889999999999988643211 11125667777777666432 123
Q ss_pred CCCEEEee-cCCCCCHHHHHHHHH
Q 021750 277 APPWIMTS-SVTNQGRDEILLHMA 299 (308)
Q Consensus 277 ~~~~~~vS-A~~g~gi~el~~~i~ 299 (308)
..|.|.+. .-....++++++.|.
T Consensus 147 D~plf~i~~~~~~~~~~~I~~~l~ 170 (270)
T PF08433_consen 147 DSPLFTIDSSDEELPLEEIWNALF 170 (270)
T ss_dssp GS-SEEEE-TTS---HHHHHHHHH
T ss_pred cCCeEEEecCCCCCCHHHHHHHHH
Confidence 45677766 566667788887774
|
The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A. |
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.031 Score=46.24 Aligned_cols=64 Identities=11% Similarity=0.026 Sum_probs=36.8
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCC-CEEEEeecCCCCC
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQI-PMTLVFTKCDKRK 250 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~-pvivV~NK~Dl~~ 250 (308)
.++++|||+-.. ......+.. +|.++++++++...-..-..+.+++...+. ...+|+|++|...
T Consensus 64 d~viiD~p~~~~------------~~~~~~l~~---ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIE------------RGFITAIAP---ADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCc------------HHHHHHHHh---CCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 799999987321 012222333 344888888875432222244455544333 4678999998653
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0013 Score=52.80 Aligned_cols=21 Identities=48% Similarity=0.706 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999985
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0057 Score=54.73 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=23.8
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCC
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
+....|--.+.|.-|+|||||+|.++.++
T Consensus 53 ~~~rIPvtIITGyLGaGKtTLLn~Il~~~ 81 (391)
T KOG2743|consen 53 LGARIPVTIITGYLGAGKTTLLNYILTGQ 81 (391)
T ss_pred CCCccceEEEEecccCChHHHHHHHHccC
Confidence 34456677899999999999999999753
|
|
| >KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0021 Score=64.43 Aligned_cols=127 Identities=26% Similarity=0.299 Sum_probs=75.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcce----eccCCCCc----------------e-EE------------------
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLA----LTSKTPGK----------------T-QC------------------ 163 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~----~~~~~~~~----------------t-~~------------------ 163 (308)
-..|.|++||..++||||.++.+.+..+.+ +++..|-. . ..
T Consensus 27 i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e 106 (657)
T KOG0446|consen 27 IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE 106 (657)
T ss_pred ccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence 446799999999999999999999965432 11111100 0 00
Q ss_pred --------------EEEEEeC----CCEEEecCCCccc---CCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCC--C
Q 021750 164 --------------INHFRIN----DSWYLVDLPGYGY---AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASI--P 220 (308)
Q Consensus 164 --------------~~~~~~~----~~~~liDtpG~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~--~ 220 (308)
.....+. ..++++|+||+.. +..+..+..++..+...|+..-.. +++.+.+.+ -
T Consensus 107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~---iILav~~an~d~ 183 (657)
T KOG0446|consen 107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNR---IILAVTPANSDI 183 (657)
T ss_pred HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccch---hhhhccchhhhh
Confidence 0001111 1478999999965 233444555677777777655444 344444432 1
Q ss_pred CChhHHHHHHHhccCCCCEEEEeecCCCCCcc
Q 021750 221 AKPIDLEYASWLGQNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 221 ~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~ 252 (308)
.+.....+.+.....+...+-|++|+|+.+..
T Consensus 184 ats~alkiarevDp~g~RTigvitK~DlmdkG 215 (657)
T KOG0446|consen 184 ATSPALVVAREVDPGGSRTLEVITKFDFMDKG 215 (657)
T ss_pred hcCHHHHHHHhhCCCccchhHHhhhHHhhhcC
Confidence 23333455555555677788888888887654
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0014 Score=50.88 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|.|.|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
|
... |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0013 Score=57.42 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
=|+|+|++|||||||+|.+.+-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999853
|
|
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0016 Score=55.03 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
=|+|+|++|||||||+++|+...
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48999999999999999998853
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0023 Score=53.17 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+|.|+|.+|+|||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999875
|
|
| >COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0014 Score=54.85 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
=++|.|++|||||||+++|....
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999875
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0026 Score=50.48 Aligned_cols=23 Identities=39% Similarity=0.497 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
.++|+|..|+|||||++.|++..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 69999999999999999999863
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0025 Score=53.09 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+|+|+|.+|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999999764
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0035 Score=42.92 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
..+|.|+.|+|||||+.++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998864
|
|
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0024 Score=54.92 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|++|||||||++.|...
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhc
Confidence 5788999999999999999764
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0029 Score=54.90 Aligned_cols=22 Identities=50% Similarity=0.498 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|++|+|||||+|-+-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5999999999999999999774
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0036 Score=43.85 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|++.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999874
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0033 Score=52.52 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||+|-+.+-
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhc
Confidence 7999999999999999999874
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0033 Score=52.81 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+|+|+|.|||||||+...|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999876
|
|
| >TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.026 Score=49.84 Aligned_cols=92 Identities=13% Similarity=0.156 Sum_probs=47.8
Q ss_pred EEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCccc----CCCCCchhhHHHHHHHHHhhh---cCCCCEEEee
Q 021750 212 FLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKK----NGGKRPEENLNDFQELIQGFF---QTAPPWIMTS 284 (308)
Q Consensus 212 l~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~vS 284 (308)
.+++|..........++..++...+.+.++|.-.++.....+ .......+.++.+...+..-. .+..+.+.+.
T Consensus 70 ~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd 149 (249)
T TIGR03574 70 SVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEKIPNEVIKDMYEKFDEPGTKYSWDLPDLTID 149 (249)
T ss_pred eEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCCCCHHHHHHHHHhhCCCCCCCCccCceEEec
Confidence 477787654433334555555566778877776666321111 111123333444443332211 1124667776
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 021750 285 SVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 285 A~~g~gi~el~~~i~~~~~ 303 (308)
......++++.+.|.+.+.
T Consensus 150 ~~~~~~~~ei~~~i~~~~~ 168 (249)
T TIGR03574 150 TTKKIDYNEILEEILEISE 168 (249)
T ss_pred CCCCCCHHHHHHHHHHHhh
Confidence 6444577888888877543
|
Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity. |
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0036 Score=50.00 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|+++|.||+|||||+..+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
|
... |
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.004 Score=50.15 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+.|+++|..|+|||||+..|++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999874
|
|
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0029 Score=52.02 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=17.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999865
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.05 Score=39.63 Aligned_cols=44 Identities=30% Similarity=0.443 Sum_probs=29.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcc
Q 021750 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYG 182 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~ 182 (308)
+++.|..|+||||+...+...- .. .|.. +.. .+ .+.++|++|..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l--~~----~g~~--v~~--~~-d~iivD~~~~~ 45 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAAL--AK----RGKR--VLL--ID-DYVLIDTPPGL 45 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHH--HH----CCCe--EEE--EC-CEEEEeCCCCc
Confidence 6788999999999999988641 11 1111 111 11 78999999854
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0082 Score=55.55 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
--|.++|..|+||||.+..|..
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~ 123 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAY 123 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHH
Confidence 3688999999999998887764
|
|
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0092 Score=56.91 Aligned_cols=112 Identities=17% Similarity=0.236 Sum_probs=63.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCC---------------CceEEEEEEE----e------------CC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTP---------------GKTQCINHFR----I------------ND 171 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~---------------~~t~~~~~~~----~------------~~ 171 (308)
.++.++.++....-|||||...|.....+ +..... |.|.....+. . ++
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgI-is~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGI-ISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhce-eeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 44568899999999999999999874321 111111 2232211111 1 11
Q ss_pred ---CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHH-hccCCCCEEEEeecCC
Q 021750 172 ---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASW-LGQNQIPMTLVFTKCD 247 (308)
Q Consensus 172 ---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~-~~~~~~pvivV~NK~D 247 (308)
-+.++|.||..+.+. -.-..++ .-|+.+.|+|.-++.-.+....++. +.+.-+| +++.||+|
T Consensus 96 ~~FLiNLIDSPGHVDFSS----------EVTAALR---VTDGALVVVDcv~GvCVQTETVLrQA~~ERIkP-vlv~NK~D 161 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSS----------EVTAALR---VTDGALVVVDCVSGVCVQTETVLRQAIAERIKP-VLVMNKMD 161 (842)
T ss_pred cceeEEeccCCCcccchh----------hhhheeE---eccCcEEEEEccCceEechHHHHHHHHHhhccc-eEEeehhh
Confidence 277899999864221 1112223 3345788888877755444333333 3343455 56789999
Q ss_pred CC
Q 021750 248 KR 249 (308)
Q Consensus 248 l~ 249 (308)
..
T Consensus 162 RA 163 (842)
T KOG0469|consen 162 RA 163 (842)
T ss_pred HH
Confidence 54
|
|
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.04 Score=41.98 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=48.1
Q ss_pred EcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEE--EeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCc
Q 021750 131 VGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHF--RINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTL 208 (308)
Q Consensus 131 vG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (308)
=+..|+||||+...|...- .... |...-.... .....++++|||+... ......+..+
T Consensus 6 ~~kgg~gkt~~~~~la~~~--~~~~---~~~~~l~d~d~~~~~D~IIiDtpp~~~------------~~~~~~l~~a--- 65 (106)
T cd03111 6 GAKGGVGATTLAANLAVAL--AKEA---GRRVLLVDLDLQFGDDYVVVDLGRSLD------------EVSLAALDQA--- 65 (106)
T ss_pred CCCCCCcHHHHHHHHHHHH--HhcC---CCcEEEEECCCCCCCCEEEEeCCCCcC------------HHHHHHHHHc---
Confidence 3678899999877776521 0000 111111000 0112799999998431 1222333333
Q ss_pred cEEEEEEeCCCCCChhHHHHHHHhccC----CCCEEEEeec
Q 021750 209 VSVFLLIDASIPAKPIDLEYASWLGQN----QIPMTLVFTK 245 (308)
Q Consensus 209 ~~vl~viD~~~~~~~~~~~l~~~~~~~----~~pvivV~NK 245 (308)
|.++++++.+......-..+.+++.+. ...+.+|+|+
T Consensus 66 D~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 66 DRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 448888887654322223344444332 3456678875
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.041 Score=49.67 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=41.2
Q ss_pred HHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcc
Q 021750 197 FTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 197 ~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~ 252 (308)
-++..-......|+++=|-|+..+.+..+..+.+.+. .+|-|||.||+||.+..
T Consensus 36 alr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~--~k~riiVlNK~DLad~~ 89 (335)
T KOG2485|consen 36 ALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP--PKPRIIVLNKMDLADPK 89 (335)
T ss_pred HHHHHHhhcccccEEEEeeccccCCccccHHHHHhcC--CCceEEEEecccccCch
Confidence 3433334445567899999999999888776666666 68999999999999743
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0057 Score=51.59 Aligned_cols=22 Identities=45% Similarity=0.561 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999775
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.006 Score=46.66 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 021750 127 EFALVGRSNVGKSSLLNSLV 146 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~ 146 (308)
-++|+|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 58999999999999999986
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0056 Score=51.12 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999774
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0054 Score=56.44 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
=++++|++|||||||++.+.+-+
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999999854
|
|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0063 Score=47.34 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999875
|
... |
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.05 Score=51.32 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=20.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhc
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
.....|.++|--|+||||..-.|..
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~ 122 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAK 122 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHH
Confidence 3445799999999999998877764
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.0061 Score=51.82 Aligned_cols=21 Identities=19% Similarity=0.539 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|+|.|.+|+|||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999999874
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0064 Score=52.17 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
.++|+|++|+|||||++.+-+-+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 79999999999999999997754
|
|
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.0069 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+|+|+|.+|+|||||..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999875
|
|
| >smart00072 GuKc Guanylate kinase homologues | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0062 Score=51.29 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
=|+|+|++||||+||++.|+...
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 38999999999999999999873
|
Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0068 Score=52.01 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0071 Score=50.44 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|++|+|||||++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999985
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.02 Score=54.18 Aligned_cols=125 Identities=15% Similarity=0.200 Sum_probs=69.7
Q ss_pred EEEEe-CC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCC---------hhH--HHHHH-
Q 021750 165 NHFRI-ND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAK---------PID--LEYAS- 230 (308)
Q Consensus 165 ~~~~~-~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~---------~~~--~~l~~- 230 (308)
..+.+ ++ .+.++|+.|... + ++-|.+++. .+.+|+||++.++... ... +.+..
T Consensus 228 ~~f~~~~~~~~~~~DvGGqr~-----e-----RkKW~~~F~---~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~ 294 (389)
T PF00503_consen 228 IDFNFSGSRKFRLIDVGGQRS-----E-----RKKWIHCFE---DVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFES 294 (389)
T ss_dssp EEEEE-TTEEEEEEEETSSGG-----G-----GGGGGGGGT---TESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHH
T ss_pred EEEEeecccccceecCCCCch-----h-----hhhHHHHhc---cccEEEEeecccchhhhhcccchHHHHHHHHHHHHH
Confidence 34555 44 799999999642 1 113334443 4556999999874321 111 12211
Q ss_pred Hhc---cCCCCEEEEeecCCCCCcccCCCC-----C----ch--hhHHHHHHHHHhhhc---------CCCCEEEeecCC
Q 021750 231 WLG---QNQIPMTLVFTKCDKRKKKKNGGK-----R----PE--ENLNDFQELIQGFFQ---------TAPPWIMTSSVT 287 (308)
Q Consensus 231 ~~~---~~~~pvivV~NK~Dl~~~~~~~~~-----~----~~--~~~~~~~~~~~~~~~---------~~~~~~~vSA~~ 287 (308)
++. -.+.|+||++||+|+....-.... . .. ...+...+.+...|. ..+-+..++|.+
T Consensus 295 i~~~~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d 374 (389)
T PF00503_consen 295 ICNNPWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATD 374 (389)
T ss_dssp HHTSGGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTS
T ss_pred HHhCcccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecc
Confidence 111 157999999999997643221111 0 11 233444444443322 122455789999
Q ss_pred CCCHHHHHHHHHHHH
Q 021750 288 NQGRDEILLHMAQLR 302 (308)
Q Consensus 288 g~gi~el~~~i~~~~ 302 (308)
.+++..+|+.+.+.+
T Consensus 375 ~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 375 TENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCcC
Confidence 999999999888754
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.0073 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
++|+|+|.||+||||+.+.|...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999764
|
|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.0075 Score=50.16 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+|.|.|.||+|||||+++++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 5899999999999999998863
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.0074 Score=50.64 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 7999999999999999999985
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.0073 Score=52.43 Aligned_cols=21 Identities=48% Similarity=0.629 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-|+|+|++|+|||||+..+-+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 599999999999999999987
|
|
| >KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.0075 Score=48.65 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
...|+|.+.|-||+|||||..++...
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHH
Confidence 55689999999999999999999864
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.0079 Score=51.90 Aligned_cols=22 Identities=50% Similarity=0.502 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|++.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.0076 Score=50.89 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.0087 Score=46.50 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||+++..+...
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhc
Confidence 6899999999999999999885
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.0071 Score=51.90 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|.+|+|||||++.|.+.
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999874
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.0083 Score=50.27 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.++|+|++|+|||||++.+..
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 799999999999999999864
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.0077 Score=51.72 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.0082 Score=51.74 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.0077 Score=52.67 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2 | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.0019 Score=54.29 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
=|+|+|++|+||+||.++|+..
T Consensus 4 ~ivl~Gpsg~GK~~l~~~L~~~ 25 (183)
T PF00625_consen 4 PIVLVGPSGSGKSTLAKRLIQE 25 (183)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3889999999999999999874
|
7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A .... |
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.0096 Score=49.84 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
.+-|+++|.||+||||+++.|..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.14 Score=43.87 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=76.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHH-HHHHHHHh
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDK-FTKDYFLN 204 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~-~~~~~~~~ 204 (308)
+=|.+.|.||+|||||.+-|...-. ...-..+..+.+. ....+||-.--.+ .+ .++. +.+..++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~-~~i~~vi~l~kdy------~~~i~~DEslpi~----ke---~yres~~ks~~rl 67 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR-QEIWRVIHLEKDY------LRGILWDESLPIL----KE---VYRESFLKSVERL 67 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH-Hhhhhccccchhh------hhheecccccchH----HH---HHHHHHHHHHHHH
Confidence 4588999999999999998876311 1111111111110 1234455311100 11 1111 11111111
Q ss_pred cCC-ccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCC----CcccCCCCCchhhHHHHHHHHHhhhc---C
Q 021750 205 RST-LVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR----KKKKNGGKRPEENLNDFQELIQGFFQ---T 276 (308)
Q Consensus 205 ~~~-~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 276 (308)
... ++--+.++|..+-......++.....+..++..|+-.++-+. .+.++....+.+.++++.+.+.+-.+ +
T Consensus 68 ldSalkn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~ergepip~Evl~qly~RfEePn~~~rW 147 (261)
T COG4088 68 LDSALKNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGEPIPEEVLRQLYDRFEEPNPDRRW 147 (261)
T ss_pred HHHHhcceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCCCCCHHHHHHHHHhhcCCCCCccc
Confidence 110 111467788887777777777777777888888888887542 12233344567777777777654222 3
Q ss_pred CCCEEEee
Q 021750 277 APPWIMTS 284 (308)
Q Consensus 277 ~~~~~~vS 284 (308)
..|.+.+-
T Consensus 148 Dspll~id 155 (261)
T COG4088 148 DSPLLVID 155 (261)
T ss_pred cCceEEEe
Confidence 45666654
|
|
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.0076 Score=50.28 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+-++|+|.+|+|||||+++++..
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 346899999999999999999874
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.0089 Score=46.68 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|.+.|+||+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999875
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.009 Score=51.09 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|++-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.0086 Score=51.50 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.+.+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.0093 Score=50.93 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.+.+.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999985
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.0089 Score=50.00 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+|+|+|.||+||||+..+|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.0095 Score=51.54 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.009 Score=51.24 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.009 Score=51.67 Aligned_cols=22 Identities=45% Similarity=0.516 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|.+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.0093 Score=48.17 Aligned_cols=22 Identities=41% Similarity=0.675 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999999986
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.0097 Score=51.13 Aligned_cols=22 Identities=41% Similarity=0.526 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999985
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.0099 Score=50.15 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++++|++|+|||||++.|++.
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7999999999999999999874
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.0093 Score=51.51 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.+.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 308 | ||||
| 3pqc_A | 195 | Crystal Structure Of Thermotoga Maritima Ribosome B | 2e-33 | ||
| 1sul_A | 195 | Crystal Structure Of The Apo-Ysxc Length = 195 | 2e-29 | ||
| 1pui_A | 210 | Structure Of Engb Gtpase Length = 210 | 5e-28 | ||
| 4dhe_A | 223 | Crystal Structure Of A Probable Gtp-Binding Protein | 3e-25 | ||
| 2cxx_A | 190 | Crystal Structure Of A Probable Gtp-binding Protein | 8e-05 | ||
| 4dcs_A | 456 | Crystal Structure Of B. Subtilis Enga In Complex Wi | 2e-04 | ||
| 2dyk_A | 161 | Crystal Structure Of N-Terminal Gtp-Binding Domain | 3e-04 |
| >pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN COMPLEX WITH GDP Length = 195 | Back alignment and structure |
|
| >pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc Length = 195 | Back alignment and structure |
|
| >pdb|1PUI|A Chain A, Structure Of Engb Gtpase Length = 210 | Back alignment and structure |
|
| >pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb From Burkholderia Thailandensis Length = 223 | Back alignment and structure |
|
| >pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb Length = 190 | Back alignment and structure |
|
| >pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Sulfate Ion And Gdp Length = 456 | Back alignment and structure |
|
| >pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga From Thermus Thermophilus Hb8 Length = 161 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* Length = 195 | Back alignment and structure |
|---|
Score = 281 bits (721), Expect = 4e-96
Identities = 72/200 (36%), Positives = 108/200 (54%), Gaps = 7/200 (3%)
Query: 104 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC 163
+V ++E V S+V+ E P GLPE AL GRSNVGKSS +NSL+ RK LA TS PGKTQ
Sbjct: 2 KVTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQT 61
Query: 164 INHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP 223
+N + IND + VD+PGYG+A + R W + + Y R L +V ++D
Sbjct: 62 LNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSN 121
Query: 224 IDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283
D++ +L IP+ ++ TK DK K K +++ ++ + I+
Sbjct: 122 DDVQMYEFLKYYGIPVIVIATKADKIPKGKW-----DKHAKVVRQTLN--IDPEDELILF 174
Query: 284 SSVTNQGRDEILLHMAQLRN 303
SS T +G+DE + ++ N
Sbjct: 175 SSETKKGKDEAWGAIKKMIN 194
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 Length = 210 | Back alignment and structure |
|---|
Score = 275 bits (705), Expect = 1e-93
Identities = 71/198 (35%), Positives = 97/198 (48%), Gaps = 6/198 (3%)
Query: 104 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC 163
Q FV S+ PSD E A GRSN GKSS LN+L +K LA TSKTPG+TQ
Sbjct: 5 NYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64
Query: 164 INHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP 223
IN F + D LVDLPGYGYA P E++ W + +Y R +L + +L+D P K
Sbjct: 65 INLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD 124
Query: 224 IDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283
+D + W + I + ++ TK DK + LN +E + F
Sbjct: 125 LDQQMIEWAVDSNIAVLVLLTKADKLASGAR-----KAQLNMVREAVLA-FNGDVQVETF 178
Query: 284 SSVTNQGRDEILLHMAQL 301
SS+ QG D++ +
Sbjct: 179 SSLKKQGVDKLRQKLDTW 196
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} Length = 223 | Back alignment and structure |
|---|
Score = 273 bits (701), Expect = 7e-93
Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 9/209 (4%)
Query: 99 YARDAQVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTP 158
+ + QA F + D P PE A GRSN GKS+ +N L +K+LA SKTP
Sbjct: 3 GSMAFLLHQARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTP 62
Query: 159 GKTQCINHFRINDSW----YLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLL 214
G+TQ IN+F + + +LVDLPGYGYA P + W++ Y R L + L+
Sbjct: 63 GRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILM 122
Query: 215 IDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDK--RKKKKNGGKRPEENLNDFQELIQG 272
+DA P +D W P+ + TKCDK R++ N + +++L+ +++
Sbjct: 123 MDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAG-- 180
Query: 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQL 301
+ + S++ G D+ +
Sbjct: 181 -YAGKLTVQLFSALKRTGLDDAHALIESW 208
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A Length = 195 | Back alignment and structure |
|---|
Score = 269 bits (690), Expect = 1e-91
Identities = 82/195 (42%), Positives = 108/195 (55%), Gaps = 8/195 (4%)
Query: 107 QAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH 166
E VK + D P E A VGRSNVGKSSLLN+L RK +A SKTPGKT+ IN
Sbjct: 5 DVELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINF 63
Query: 167 FRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL 226
+ +N +Y VDLPGYGYA ++ R W + +DYF NR +L VFLL+D IP + DL
Sbjct: 64 YLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDL 123
Query: 227 EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSV 286
W+ IP T+V TK DK K + + L + +++ I TSSV
Sbjct: 124 MMVEWMKSLNIPFTIVLTKMDKVKMSER-----AKKLEEHRKVFS--KYGEYTIIPTSSV 176
Query: 287 TNQGRDEILLHMAQL 301
T +G E+L ++ L
Sbjct: 177 TGEGISELLDLISTL 191
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 1e-53
Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 24/185 (12%)
Query: 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYA 184
+ GRSNVGKS+L+ L +K K PG T+ I + ++D+PG+G+
Sbjct: 1 MATIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWKN-HKIIDMPGFGFM 57
Query: 185 AA-PRELRTDWDKFTKDYFLNRS-TLVSVFLLIDASIPA-----------KPIDLEYASW 231
P+E++ + + + + L++D PID+E+ +
Sbjct: 58 MGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQF 117
Query: 232 LGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQE-LIQGFFQTAPPWIMTSSVTNQG 290
L + IP + K DK K +E +N E + +I S+
Sbjct: 118 LRELDIPTIVAVNKLDKIKNV-------QEVINFLAEKFEVPLSEIDKVFIPISAKFGDN 170
Query: 291 RDEIL 295
+ +
Sbjct: 171 IERLK 175
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 94.8 bits (235), Expect = 4e-22
Identities = 30/187 (16%), Positives = 58/187 (31%), Gaps = 23/187 (12%)
Query: 119 DCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC---INHFRIND--SW 173
+ A+ G + GKSS +N+L + G + + ++ + +
Sbjct: 63 KEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNV 122
Query: 174 YLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG 233
DLPG G P + Y F +I ++ K D++ A +
Sbjct: 123 VFWDLPGIGSTNFPPD----------TYLEKMKFYEYDFFIIISATRFKKNDIDIAKAIS 172
Query: 234 QNQIPMTLVFTKCDK--------RKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSS 285
+ V TK D + + K ++ + + PP + S+
Sbjct: 173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSN 232
Query: 286 VTNQGRD 292
D
Sbjct: 233 KNVCHYD 239
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 2e-12
Identities = 37/187 (19%), Positives = 60/187 (32%), Gaps = 57/187 (30%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT--------------QCINHFRINDSWY 174
+ GR NVGKSS +N+LV + +++ S G T
Sbjct: 38 VVAGRRNVGKSSFMNALV-GQNVSIVSDYAGTTTDPVYKSMELHPIGPVT---------- 86
Query: 175 LVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVS------VFLLIDASIPAKPIDLEY 228
LVD PG LR L+ D++ P + +
Sbjct: 87 LVDTPGLDDVGELGRLR------------VEKARRVFYRADCGILVTDSAPT--PYEDDV 132
Query: 229 ASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTN 288
+ + +IP +V K D +K E L E ++ S++
Sbjct: 133 VNLFKEMEIPFVVVVNKIDVLGEK-------AEELKGLYESRYEA-----KVLLVSALQK 180
Query: 289 QGRDEIL 295
+G D+I
Sbjct: 181 KGFDDIG 187
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 7e-10
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 131 VGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPG 180
+G NVGKS+L+N L +K +A T PG T ++ L+D PG
Sbjct: 126 IGIPNVGKSTLINRL-AKKNIAKTGDRPGITTSQQWVKVGKELELLDTPG 174
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 6e-09
Identities = 42/199 (21%), Positives = 74/199 (37%), Gaps = 58/199 (29%)
Query: 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT-----QCIN----HFRINDSW 173
GL +VG+ NVGKS+LLN L+ + A+ + PG T + I FRI
Sbjct: 242 RGLR-MVIVGKPNVGKSTLLNRLLNEDR-AIVTDIPGTTRDVISEEIVIRGILFRI---- 295
Query: 174 YLVDLPGYGYAAAPRELRTDWDKFTKDY-----------FLNRSTLVSVFLLIDASIPAK 222
VD G +R++ T D + ++ + V ++DAS P
Sbjct: 296 --VDTAG---------VRSE----TNDLVERLGIERTLQEIEKADI--VLFVLDASSPLD 338
Query: 223 PIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282
D + + +V K D +K +E I+ T +
Sbjct: 339 EEDRKILERI--KNKRYLVVINKVDVVEKIN-------------EEEIKNKLGTDRHMVK 383
Query: 283 TSSVTNQGRDEILLHMAQL 301
S++ +G +++ + +
Sbjct: 384 ISALKGEGLEKLEESIYRE 402
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 9e-09
Identities = 41/182 (22%), Positives = 72/182 (39%), Gaps = 37/182 (20%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT----QCINHFRINDSWY-LVDLPGYGY 183
A+VG+ NVGKS+LLN+L+ K+++ S G T + + N++ +D PG
Sbjct: 14 AIVGKPNVGKSTLLNNLLGT-KVSIISPKAGTTRMRVLGVKN-IPNEAQIIFLDTPGIYE 71
Query: 184 AAAPRELRTDWDKFTKDYFLNR---STLVSV---FLLIDASIPAKPIDLE-YASWLGQNQ 236
L + + +L +IDA+ +P D E Y +++
Sbjct: 72 PKKSDVL---------GHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLN 122
Query: 237 IPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW---IMTSSVTNQGRDE 293
P+ +V K DK K + LI + P + S++ DE
Sbjct: 123 KPVIVVINKIDKIGPAK-----------NVLPLIDEIHKKHPELTEIVPISALKGANLDE 171
Query: 294 IL 295
++
Sbjct: 172 LV 173
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-08
Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 19/155 (12%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT-QCINHFRIND--SWYLVDLPGYGYAA 185
++G+ VGKSS +NSL+ + S + + + R + ++D PG
Sbjct: 40 LVLGKGGVGKSSTVNSLIGEQV-VRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGL---- 94
Query: 186 APRELRTDWDKFTKDY--FLNRSTLVSVFLLIDASIPA-----KPIDLEYASWLGQN-QI 237
E + + FL T+ + + + A K + + G+
Sbjct: 95 --VEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWC 152
Query: 238 PMTLVFTKCDK-RKKKKNGGKRPEENLNDFQELIQ 271
LV T + + + + + I+
Sbjct: 153 KTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIR 187
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 2e-08
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 130 LVGRSNVGKSSLLNSLVR----RKKLALTSKTPGKTQCINHFRINDSWYLVDLPG 180
+VG +NVGKS+ +N ++ + + TS PG T + + L D PG
Sbjct: 167 VVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPG 221
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 5e-08
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 131 VGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPG 180
VG N GKS+++N L + K+ + PG T+ I F + + ++D PG
Sbjct: 105 VGVPNTGKSTIINKL-KGKRASSVGAQPGITKGIQWFSLENGVKILDTPG 153
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 5e-08
Identities = 53/334 (15%), Positives = 92/334 (27%), Gaps = 105/334 (31%)
Query: 41 TLSTTEPIPISHAVEPEPEPHVAIS-LEKLFVPPETE------VSIDDSSLSTRILKGSN 93
L TT ++ + H+++ P E + + L +L +
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 94 IVLS-------------KYARDAQV-AQAEFVKSSVRT----------EDC---PSD-GL 125
LS + ++SS+ + P +
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 126 PEFAL------VGRSNVG-------KSSLLNSLVRRKK----------LALTSKTPGKTQ 162
P L V +S+V K SL+ ++ K L L K +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVE---KQPKESTISIPSIYLELKVKLENEYA 444
Query: 163 ----CINHFRIN---DSWYLVDLP--GY-----GYAAAPRELRTDWDKFTKDYFLNRSTL 208
++H+ I DS L+ Y G+ E F FL+
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM-VFLDFR-- 501
Query: 209 VSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKK---NGGKRPEENLND 265
F + K I + +W I TL + K + + E +N
Sbjct: 502 ---F------LEQK-IRHDSTAWNASGSILNTLQ----QLKFYKPYICDNDPKYERLVNA 547
Query: 266 FQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMA 299
I F ++ S T+ LL +A
Sbjct: 548 ----ILDFLPKIEENLICSKYTD------LLRIA 571
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 1e-07
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 130 LVGRSNVGKSSLLNSLVRR-----KKLALTSKTPGKTQCINHFRINDSWYLVDLPGY 181
+VG +NVGKS+ +N +++ + + TS PG T + +++ L D PG
Sbjct: 165 VVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGI 221
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-07
Identities = 38/201 (18%), Positives = 63/201 (31%), Gaps = 59/201 (29%)
Query: 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT-----QCIN----HFRINDSW 173
+G+ + G+ N GKS+LLN+L+ +++ A+ S PG T +C FR+ D+
Sbjct: 232 EGVS-TVIAGKPNAGKSTLLNTLLGQER-AIVSHMPGTTRDYIEECFIHDKTMFRLTDT- 288
Query: 174 YLVDLPGYGYAAAPRELRTD-----------WDKFTKDYFLNRSTLVSVFLLIDASIPAK 222
A RE K + + L + L+D
Sbjct: 289 -----------AGLRE--AGEEIEHEGIRRSRMK------MAEADL--ILYLLDLGTERL 327
Query: 223 PIDLEYASWLGQN--QIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW 280
+L L V K D+ + +
Sbjct: 328 DDELTEIRELKAAHPAAKFLTVANKLDRAANADALIRAIADGTG-------------TEV 374
Query: 281 IMTSSVTNQGRDEILLHMAQL 301
I S++ G D + HM L
Sbjct: 375 IGISALNGDGIDTLKQHMGDL 395
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-07
Identities = 40/193 (20%), Positives = 65/193 (33%), Gaps = 59/193 (30%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT-----QCINH----FRINDSWYLVDLP 179
A+VGR NVGKSSLLN+ + + A+ + PG T + ++ D+
Sbjct: 228 AIVGRPNVGKSSLLNAWSQSDR-AIVTDLPGTTRDVVESQLVVGGIPVQVLDT------- 279
Query: 180 GYGYAAAPRELRTD-----------WDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEY 228
A RE T N + L V L IDA+ D E
Sbjct: 280 -----AGIRE--TSDQVEKIGVERSRQA------ANTADL--VLLTIDAATGWTTGDQEI 324
Query: 229 ASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTN 288
+ P+ LV K D ++ + + + T++
Sbjct: 325 YEQV--KHRPLILVMNKID---------LVEKQLITSLEYPENI-----TQIVHTAAAQK 368
Query: 289 QGRDEILLHMAQL 301
QG D + + ++
Sbjct: 369 QGIDSLETAILEI 381
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301 | Back alignment and structure |
|---|
Score = 50.1 bits (121), Expect = 3e-07
Identities = 41/188 (21%), Positives = 67/188 (35%), Gaps = 54/188 (28%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTS-------------KTPGKTQCINHFRINDSWYL 175
A+VGR NVGKS+LLN L+ +K+++TS T G Q I
Sbjct: 12 AIVGRPNVGKSTLLNKLL-GQKISITSRKAQTTRHRIVGIHTEGAYQAI----------Y 60
Query: 176 VDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVS------VFLLIDASIPAKPIDLEYA 229
VD PG + R + + +N++ S V +++ + D
Sbjct: 61 VDTPGL-HMEEKRAI---------NRLMNKAASSSIGDVELVIFVVEGTRWTPD-DEMVL 109
Query: 230 SWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW--IMTSSVT 287
+ L + + P+ L K D ++K D +Q + S+ T
Sbjct: 110 NKLREGKAPVILAVNKVDNVQEK-----------ADLLPHLQFLASQMNFLDIVPISAET 158
Query: 288 NQGRDEIL 295
D I
Sbjct: 159 GLNVDTIA 166
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Length = 161 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 3e-07
Identities = 38/165 (23%), Positives = 56/165 (33%), Gaps = 52/165 (31%)
Query: 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND------SW----- 173
+ + +VGR NVGKSSL N L+++ + A+ + PG T R D
Sbjct: 1 MHKVVIVGRPNVGKSSLFNRLLKK-RSAVVADVPGVT------R--DLKEGVVETDRGRF 51
Query: 174 YLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR---STLVS------VFLLIDASIPAKPI 224
LVD G + D + + + V +D
Sbjct: 52 LLVDTGGLW---------------SGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQA 96
Query: 225 DLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQEL 269
D E A +L + P+ LV TK D + E L L
Sbjct: 97 DYEVAEYLRRKGKPVILVATKVD--------DPKHELYLGPLYGL 133
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-07
Identities = 37/196 (18%), Positives = 62/196 (31%), Gaps = 63/196 (32%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT-----QCINH----FRINDSWYLVDLP 179
+ GR N GKSSLLN+L R+ A+ + G T + I+ I D+
Sbjct: 8 VIAGRPNAGKSSLLNALAGREA-AIVTDIAGTTRDVLREHIHIDGMPLHIIDT------- 59
Query: 180 GYGYAAAPRELRTD-----------WDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEY 228
A RE W + + ++ V ++D + E
Sbjct: 60 -----AGLRE--ASDEVERIGIERAWQE------IEQADR--VLFMVDGTTTDAVDPAEI 104
Query: 229 ASWLGQN---QIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSS 285
++P+T+V K D + + I S+
Sbjct: 105 WPEFIARLPAKLPITVVRNKAD---------------ITGETLGMSEV--NGHALIRLSA 147
Query: 286 VTNQGRDEILLHMAQL 301
T +G D + H+ Q
Sbjct: 148 RTGEGVDVLRNHLKQS 163
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Length = 301 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 5e-07
Identities = 34/150 (22%), Positives = 55/150 (36%), Gaps = 28/150 (18%)
Query: 130 LVGRSNVGKSSLLNSLVRRK------------KLALTSKTPGKTQCINHFRINDSWYLVD 177
+VG S +GKS+L+NSL K+ T + T I + +VD
Sbjct: 23 VVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVD 82
Query: 178 LPGYGYAAAPRELRTDWDKFTKDYF---------LNRSTL------VSVFLLIDASIPAK 222
PGYG A R+ + + F LNR + + + K
Sbjct: 83 TPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLK 142
Query: 223 PIDLEYASWLGQNQIPMTLVFTKCDKRKKK 252
P+D+ + + N++ + V K D K
Sbjct: 143 PLDVAFMKAI-HNKVNIVPVIAKADTLTLK 171
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* Length = 274 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 5e-07
Identities = 28/148 (18%), Positives = 50/148 (33%), Gaps = 27/148 (18%)
Query: 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGK-----------TQCINHFRINDSWYLVDL 178
+VG S +GKS+L+NSL + P I + +VD
Sbjct: 13 VVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDT 72
Query: 179 PGYGYAAAPRELRTDWDKFTKDYF---------LNRSTL------VSVFLLIDASIPAKP 223
PG+G A + F +NR + ++ + + KP
Sbjct: 73 PGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKP 132
Query: 224 IDLEYASWLGQNQIPMTLVFTKCDKRKK 251
+D+E+ L ++ + + K D
Sbjct: 133 LDIEFMKRL-HEKVNIIPLIAKADTLTP 159
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 6e-07
Identities = 38/165 (23%), Positives = 54/165 (32%), Gaps = 48/165 (29%)
Query: 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND------SW----- 173
+ +VGR NVGKS+L N LV++KK A+ G T R D W
Sbjct: 1 MATVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVT------R--DPVQDTVEWYGKTF 51
Query: 174 YLVDLPGYGYAAAPRELRTDWDKFTKDYFLN---RSTLVS------VFLLIDASIPAKPI 224
LVD G +D TL V ++D
Sbjct: 52 KLVDTCG-------------VFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKE 98
Query: 225 DLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQEL 269
D A +L ++ + LV K + N + E + L
Sbjct: 99 DESLADFLRKSTVDTILVANKAE------NLREFEREVKPELYSL 137
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 7e-06
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 112 KSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLV---RRKKLALTSKTPGKT 161
K + A+VGR NVGKS+L N+++ R AL S PG T
Sbjct: 167 KGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKER----ALVSPIPGTT 215
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301 | Back alignment and structure |
|---|
Score = 47.8 bits (115), Expect = 1e-06
Identities = 44/186 (23%), Positives = 66/186 (35%), Gaps = 51/186 (27%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT----QCINHFRINDSWY---LVDLPGY 181
A+VG+ NVGKS+LLN+L+ K+A S P T + I + + VD PG
Sbjct: 11 AIVGKPNVGKSTLLNNLLGV-KVAPISPRPQTTRKRLRGI----LTEGRRQIVFVDTPGL 65
Query: 182 GYAAAPRELRTDWDKFTKDYFLNR-------STLVSV---FLLIDASIPAKPIDLEYASW 231
L L V ++D P P D A
Sbjct: 66 ---------------HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARA 110
Query: 232 LGQ--NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQ 289
L ++P+ LV K D K EE + + EL+ + M S++ +
Sbjct: 111 LKPLVGKVPILLVGNKLDAAKYP-------EEAMKAYHELLP-EAEP----RMLSALDER 158
Query: 290 GRDEIL 295
E+
Sbjct: 159 QVAELK 164
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 3e-06
Identities = 24/188 (12%), Positives = 63/188 (33%), Gaps = 15/188 (7%)
Query: 99 YARDAQVAQAEFVKSSVRTEDCPSDGLPEF--ALVGRSNVGKSSLLNSLVRRKKLALTSK 156
++ A A K + + + ++G+ VGKSS +NS++ + ++++
Sbjct: 11 WSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPF 70
Query: 157 TPGKTQCINHFRIND--SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLL 214
+ + R + ++D PG + K + L+++ V +++
Sbjct: 71 QSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIND---MALNIIKSFLLDKTIDVLLYVD 127
Query: 215 IDASIPAKPIDLEYASWLGQNQIP-----MTLVFTKCDKRKKKKNGGKRPEENLNDFQEL 269
+ +D A + + + T G +E + E
Sbjct: 128 RLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD---GLPYDEFFSKRSEA 184
Query: 270 IQGFFQTA 277
+ ++
Sbjct: 185 LLQVVRSG 192
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 4e-06
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT 161
G P A+VGR NVGKS++ N + + ++ TPG T
Sbjct: 2 GKPVVAIVGRPNVGKSTIFNRIAGERI-SIVEDTPGVT 38
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 5e-06
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 117 TEDCPSDGLPEFALVGRSNVGKSSLLNSLV 146
E ++ + +F L+GR NVGKSSL+N+++
Sbjct: 167 PETKYNEEVIQFCLIGRPNVGKSSLVNAML 196
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 361 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 4e-06
Identities = 37/198 (18%), Positives = 65/198 (32%), Gaps = 37/198 (18%)
Query: 130 LVGRSNVGKSSLLNSLVRRK------------KLALTSKTPGKTQCINHFRINDSWYLVD 177
+VG S +GKS+L+NSL K+ T + T I + +VD
Sbjct: 42 VVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVD 101
Query: 178 LPGYGYA----AAPRELRTDWDKFTKDYF-----LNRSTL------VSVFLLIDASIPAK 222
PGYG A + + + D+ + Y LNR + + + K
Sbjct: 102 TPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLK 161
Query: 223 PIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282
P+D+ + + N++ + V K D + ++ I + I
Sbjct: 162 PLDVAFMKAI-HNKVNIVPVIAKADTLTL---------KERERLKKRILDEIEEHNIKIY 211
Query: 283 TSSVTNQGRDEILLHMAQ 300
DE +
Sbjct: 212 HLPDAESDEDEDFKEQTR 229
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 6e-06
Identities = 29/167 (17%), Positives = 47/167 (28%), Gaps = 17/167 (10%)
Query: 98 KYARDAQVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKT 157
+ + P + LVG++ GKS+ NS++ RK +
Sbjct: 2 HHHHHHSSGRENLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAA 61
Query: 158 PGKTQCINHFRIN---DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLL 214
T+ + +VD PG P + K L S LL
Sbjct: 62 KSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNA---ETSKEIIRCILLTSPGPHALLL 118
Query: 215 IDASIPAKPIDLEYASWLGQNQ--------IPMTLVFTKCDKRKKKK 253
+ +P E + M L+FT+ D
Sbjct: 119 V---VPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTN 162
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-05
Identities = 40/192 (20%), Positives = 65/192 (33%), Gaps = 33/192 (17%)
Query: 125 LPEFALVGRSNVGKSSLLNSLVRRK----KLALTSKTPGKTQCINHFRIND-SWYLVDLP 179
L G NVGKSS +N + R + T+K + HF + ++D P
Sbjct: 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLY----VGHFDHKLNKYQIIDTP 84
Query: 180 GYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASI-----PAKPIDL--EYASWL 232
G E R + T L V +F +ID S + I+L S
Sbjct: 85 --GLLDRAFENRNTIEMTTIT-ALAHINGVILF-IIDISEQCGLTIKEQINLFYSIKSVF 140
Query: 233 GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP---PWIMTSSVTNQ 289
+ + F K DK + D + LI+ + S++T
Sbjct: 141 S--NKSIVIGFNKIDK--------CNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGV 190
Query: 290 GRDEILLHMAQL 301
G ++ + +L
Sbjct: 191 GVEQAKITACEL 202
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 4e-05
Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 11/152 (7%)
Query: 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQ-CINHFRIND--SWYLVDLPGYGYAAA 186
LVG++ GKS+ NS++R++ + T+ C ++D P
Sbjct: 27 LVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKD 86
Query: 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWL----GQNQIP-MTL 241
E K + +L + V LL+ D + A + G++ + +
Sbjct: 87 HCE---ALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIV 143
Query: 242 VFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273
+FT + + + +L+
Sbjct: 144 LFTHKEDLNGGSLMDYMHDSDNKALSKLVAAC 175
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 7e-05
Identities = 36/190 (18%), Positives = 67/190 (35%), Gaps = 32/190 (16%)
Query: 125 LPEFALVGRSNVGKSSLLNSLVRRK----KLALTSKTPGKTQCINHFRIND-SWYLVDLP 179
+P + G NVGKS+LL +L K T++ + F + ++D P
Sbjct: 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGIN----VGQFEDGYFRYQIIDTP 222
Query: 180 GYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFL-LIDAS----IPAKPIDLEYASWLGQ 234
G P R + K L L ++ + + D S P + + G+
Sbjct: 223 --GLLDRPISERNE---IEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGE 277
Query: 235 -NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDE 293
+P +V K D EEN+ ++ ++ + I S++ G D
Sbjct: 278 FKDLPFLVVINKID---------VADEENIKRLEKFVK---EKGLNPIKISALKGTGIDL 325
Query: 294 ILLHMAQLRN 303
+ + +
Sbjct: 326 VKEEIIKTLR 335
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 308 | |||
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.96 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.96 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.95 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.95 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.92 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.91 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.91 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.91 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.91 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.91 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.91 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.9 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.9 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.9 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.9 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.9 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.9 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.9 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.9 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.9 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.9 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.9 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.9 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.9 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.9 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.9 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.9 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.89 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.89 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.89 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.89 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.89 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.89 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.89 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.89 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.89 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.89 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.89 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.89 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.89 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.89 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.89 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.89 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.89 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.89 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.89 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.89 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.89 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.89 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.89 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.89 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.89 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.89 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.89 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.89 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.89 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.89 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.88 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.88 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.88 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.88 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.88 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.88 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.88 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.88 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.88 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.88 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.88 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.88 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.88 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.88 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.88 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.88 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.88 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.88 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.88 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.87 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.87 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.87 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.87 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.87 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.87 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.87 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.87 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.87 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.87 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.87 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.87 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.87 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.87 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.87 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.87 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.87 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.87 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.86 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.86 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.86 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.86 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.86 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.86 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.86 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.86 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.86 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.86 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.86 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.86 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.86 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.86 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.86 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.85 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.85 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.85 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.85 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.85 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.85 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.85 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.85 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.84 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.84 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.84 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.84 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.84 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.84 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.83 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.83 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.82 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.82 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.82 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.71 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.81 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.81 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.81 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.8 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.8 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.8 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.8 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.8 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.8 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.8 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.79 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.79 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.79 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.78 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.78 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.78 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.77 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.77 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.76 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.76 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.75 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.74 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.74 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.74 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.74 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.73 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.73 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.73 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.73 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.72 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.72 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.72 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.72 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.72 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.71 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.71 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.7 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.7 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.69 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.68 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.68 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.68 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.67 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.67 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.66 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.65 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.65 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.65 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.64 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.64 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.63 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.62 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.62 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.62 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.6 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.59 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.58 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.58 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.56 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.56 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.55 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.55 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.54 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.53 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.46 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.46 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.46 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.45 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.43 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.43 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.42 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.39 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.36 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.3 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.19 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.16 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.15 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.11 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 99.1 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.09 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.07 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.06 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.04 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.0 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 98.96 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 98.86 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 98.84 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 98.83 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.83 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.8 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.67 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.65 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.64 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 98.62 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.56 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.52 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.51 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.47 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.33 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.25 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.97 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.95 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.81 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 97.76 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.58 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.57 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.48 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.45 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.41 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 97.38 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.33 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.28 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.05 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.05 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.84 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.78 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 96.72 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 96.65 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 96.61 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 96.45 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 96.44 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 96.44 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 96.4 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 96.36 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 96.28 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 96.24 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 96.2 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 96.19 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 96.17 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 96.14 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 96.11 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 96.1 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 96.1 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 96.08 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.06 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 96.02 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 96.01 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 95.99 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 95.98 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 95.97 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 95.96 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.95 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 95.94 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 95.93 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 95.93 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.92 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 95.92 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.92 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 95.91 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 95.9 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 95.89 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 95.87 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 95.86 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 95.86 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 95.85 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 95.84 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.84 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 95.84 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 95.81 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 95.79 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 95.79 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 95.78 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 95.78 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 95.77 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 95.75 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 95.75 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.74 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 95.74 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.72 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 95.72 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 95.71 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 95.68 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 95.68 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 95.67 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.67 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 95.65 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 95.64 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 95.62 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.61 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 95.58 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 95.53 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 95.52 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.49 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.49 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 95.49 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 95.48 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 95.48 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 95.45 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 95.43 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.4 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 95.38 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 95.35 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 95.35 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 95.33 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 95.32 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.31 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 95.26 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.26 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.26 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 95.26 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 95.26 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 95.25 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 95.22 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.2 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.2 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.19 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.18 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 95.18 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.15 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 95.15 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.14 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.14 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.13 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 95.11 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 95.08 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 95.08 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 95.06 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 95.06 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 95.06 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 95.04 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 95.01 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 94.97 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 94.94 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 94.9 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 94.88 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 94.87 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 94.87 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 94.85 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 94.83 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 94.82 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 94.8 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 94.79 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 94.79 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 94.78 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 94.78 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 94.77 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 94.77 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 94.77 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 94.77 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 94.76 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 94.75 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 94.75 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 94.73 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 94.71 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 94.7 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 94.69 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 94.66 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 94.65 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 94.65 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 94.62 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 94.62 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 94.57 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 94.55 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 94.55 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 94.55 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 94.52 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 94.49 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 94.48 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 94.48 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 94.48 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 94.47 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 94.46 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 94.44 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 94.44 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 94.41 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 94.39 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 94.36 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 94.36 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 94.36 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 94.3 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 94.29 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 94.24 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 94.22 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 94.2 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 94.19 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 94.16 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 94.15 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 94.11 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 94.09 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 94.03 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 94.03 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 94.03 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 94.0 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 93.99 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 93.94 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 93.93 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 93.91 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 93.84 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 93.81 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 93.81 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 93.81 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 93.76 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 93.71 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 93.65 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 93.63 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 93.62 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 93.62 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 93.57 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 93.54 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 93.52 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 93.5 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 93.47 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 93.42 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 93.33 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 93.31 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 93.25 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 93.25 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 93.23 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 93.14 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 93.13 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 93.12 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 93.03 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 93.0 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 92.97 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 92.94 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 92.86 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 92.81 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 92.72 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 92.69 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 92.69 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 92.68 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 92.62 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 92.57 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 92.56 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 92.54 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 92.48 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 92.45 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 92.39 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 92.37 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 92.37 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 92.36 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 92.24 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 92.23 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 92.23 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 92.17 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 92.15 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 92.14 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 92.07 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 91.96 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 91.78 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 91.72 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 91.59 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 91.59 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 91.57 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 91.57 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 91.56 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 91.53 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 91.45 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 91.39 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 91.36 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 91.31 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 91.22 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 91.18 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 91.05 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 91.05 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 90.88 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 90.88 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 90.87 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 90.87 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 90.86 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 90.85 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 90.84 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 90.83 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 90.82 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 90.82 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 90.78 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 90.73 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 90.72 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 90.71 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 90.64 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 90.63 |
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-29 Score=232.14 Aligned_cols=214 Identities=24% Similarity=0.308 Sum_probs=155.2
Q ss_pred EEcCCCCCcCCCchh--hHHHHhCCCeEEEeecccchhhhhHHHhhcccCCCCCCCCC--------------CCeEEEEc
Q 021750 69 LFVPPETEVSIDDSS--LSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDG--------------LPEFALVG 132 (308)
Q Consensus 69 i~v~~gt~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~--------------~~~I~lvG 132 (308)
|.||+||.+.+.++. +.+...+++++++++||.|| .+|.+|.++.+++|+.++.+ .++|+|+|
T Consensus 87 ~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG-~Gn~~f~~~~~~~p~~~~~g~~g~~~~~~leLk~la~V~lvG 165 (342)
T 1lnz_A 87 IKVPPGTVVTDDDTKQVIADLTEHGQRAVIARGGRGG-RGNSRFATPANPAPQLSENGEPGKERYIVLELKVLADVGLVG 165 (342)
T ss_dssp EEECTTEEEEETTTCCEEEEECSTTCEEEEECCCCCC-CCGGGSCBTTBSSCCCCCCCCCCCEEEEEEEEECCCCEEEES
T ss_pred EEcCCccEEEeCCCCcEehhhhcCCcEEEEeCCCCCc-cCccccccccccccccccCCCCcchhhHhhhhhhcCeeeeeC
Confidence 999999999987665 45566779999999999885 99999999999999988776 35899999
Q ss_pred CCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeC--CCEEEecCCCcccC-CCchhhhhchHHHHHHHHHhcCC
Q 021750 133 RSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIN--DSWYLVDLPGYGYA-AAPRELRTDWDKFTKDYFLNRST 207 (308)
Q Consensus 133 ~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~--~~~~liDtpG~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 207 (308)
.+|||||||+|+|++.+ ..+...+.+|.. ...+.++ ..+.+|||||+.+. ..... +...|+.....
T Consensus 166 ~~nvGKSTLln~L~~~~--~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~-------l~~~fl~~i~~ 236 (342)
T 1lnz_A 166 FPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVG-------LGHQFLRHIER 236 (342)
T ss_dssp STTSSHHHHHHHSEEEC--CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTT-------THHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHcCC--CccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccch-------hHHHHHHHHHh
Confidence 99999999999999875 234555555543 2344454 37999999998652 22222 33344444444
Q ss_pred ccEEEEEEeCCC---CCChhHH-HHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 208 LVSVFLLIDASI---PAKPIDL-EYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 208 ~~~vl~viD~~~---~~~~~~~-~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
++++++|+|+++ .....+. .+...+. ..++|+++|+||+|+... .+.++++.+.+. ...
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--------~e~~~~l~~~l~----~~~ 304 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--------AENLEAFKEKLT----DDY 304 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--------HHHHHHHHHHCC----SCC
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--------HHHHHHHHHHhh----cCC
Confidence 567999999987 3333322 1222222 147999999999999752 233444444332 226
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+++++||++++|+++++++|.+.+.+
T Consensus 305 ~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 305 PVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp CBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 89999999999999999999988764
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-28 Score=202.89 Aligned_cols=188 Identities=38% Similarity=0.584 Sum_probs=137.5
Q ss_pred HHhhcccCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCch
Q 021750 109 EFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPR 188 (308)
Q Consensus 109 ~f~~s~~~~~~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~ 188 (308)
+|..+.....+.+....++|+++|.+|||||||+|+|++..+...+.+.+++|.....+..++++.+|||||+.......
T Consensus 7 ~~~~s~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 86 (195)
T 1svi_A 7 EIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSK 86 (195)
T ss_dssp EEEEEESSGGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCH
T ss_pred EEEEecCChhhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccccCH
Confidence 45555555556677788999999999999999999999987666778888888877777777899999999987654433
Q ss_pred hhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHH
Q 021750 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQE 268 (308)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 268 (308)
.....+..++..|+.....++++++|+|++++.+..+.++..|+...+.|+++|+||+|+....+ .....+++.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~-----~~~~~~~~~~ 161 (195)
T 1svi_A 87 SEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGK-----WDKHAKVVRQ 161 (195)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGG-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHH-----HHHHHHHHHH
Confidence 33446777888888888777889999999998888887778888888999999999999986442 2222334443
Q ss_pred HHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 269 LIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 269 ~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.+.. ....+++++||++|+|+++++++|.+.+.
T Consensus 162 ~~~~--~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 162 TLNI--DPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp HHTC--CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHcc--cCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 3331 13478999999999999999999988763
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-27 Score=197.26 Aligned_cols=187 Identities=43% Similarity=0.686 Sum_probs=144.8
Q ss_pred HhhcccCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchh
Q 021750 110 FVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRE 189 (308)
Q Consensus 110 f~~s~~~~~~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~ 189 (308)
|..+.....+.+....++|+++|.+|||||||+|+|++.. ...+.+.++++........+.++.+|||||+........
T Consensus 8 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 86 (195)
T 3pqc_A 8 LVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKK 86 (195)
T ss_dssp EEEEECSTTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHH
T ss_pred HHHHhcChhhCCCCCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEECCcEEEEECCCCccccCChh
Confidence 3444455556667788899999999999999999999986 456778888888777777778999999999765433333
Q ss_pred hhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHH
Q 021750 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQEL 269 (308)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 269 (308)
....+..++..|+.....++++++|+|++......+..+..|+...++|+++|+||+|+.+..+ .....+++.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~-----~~~~~~~~~~~ 161 (195)
T 3pqc_A 87 ERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSE-----RAKKLEEHRKV 161 (195)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGG-----HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHH-----HHHHHHHHHHH
Confidence 3346777888999999888999999999988888777788888888999999999999985432 22223333333
Q ss_pred HHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 270 IQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 270 ~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.... ...+++++||++|+|+++++++|.+.+.+
T Consensus 162 ~~~~--~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 162 FSKY--GEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp HHSS--CCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred Hhhc--CCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 3321 23689999999999999999999988753
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=205.90 Aligned_cols=191 Identities=31% Similarity=0.548 Sum_probs=148.3
Q ss_pred HHhhcccCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC----CCEEEecCCCcccC
Q 021750 109 EFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN----DSWYLVDLPGYGYA 184 (308)
Q Consensus 109 ~f~~s~~~~~~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~----~~~~liDtpG~~~~ 184 (308)
+|..+.....+.+....++|+++|.+|||||||+|+|++.++...+...+++|.....+... ..+.+|||||+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 92 (223)
T 4dhe_A 13 RFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYA 92 (223)
T ss_dssp EEEEEECSGGGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSS
T ss_pred hHHhcccchhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcc
Confidence 34445555556667778899999999999999999999987556788888888876666654 48999999998765
Q ss_pred CCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHH
Q 021750 185 AAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLN 264 (308)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~ 264 (308)
....+....|..++..|+.....++++++|+|++++.+..+..+..++...++|+++|+||+|+....+ .....+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~-----~~~~~~ 167 (223)
T 4dhe_A 93 EVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQE-----SINALR 167 (223)
T ss_dssp CCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHH-----HHHHHH
T ss_pred cCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhh-----HHHHHH
Confidence 444444456778888999998888999999999988888887888888888899999999999986432 223344
Q ss_pred HHHHHHHhhh----cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 265 DFQELIQGFF----QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 265 ~~~~~~~~~~----~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.+.+.+.... ....+++++||++|+|+++++++|.+.+..
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 168 ATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 4444444321 245789999999999999999999988754
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-25 Score=189.76 Aligned_cols=154 Identities=16% Similarity=0.199 Sum_probs=113.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+|+|.+|||||||+++|+.+.+...+.++.|.......+..++ .+.+|||+|.. +|..+...|
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe----------~~~~l~~~~ 82 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE----------RFRSLIPSY 82 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTT----------TCGGGHHHH
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCch----------hhhhHHHHH
Confidence 46999999999999999999999877666666666555555555555 57899999953 455677888
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
++.++. +++|+|.++..++.+. ..|+. ..+.|++||+||+|+.+.+. +..++.+++.+.++
T Consensus 83 ~~~a~~---~ilv~di~~~~Sf~~i--~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~----V~~~e~~~~a~~~~---- 149 (216)
T 4dkx_A 83 IRDSAA---AVVVYDITNVNSFQQT--TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----VSIEEGERKAKELN---- 149 (216)
T ss_dssp HTTCSE---EEEEEETTCHHHHHTH--HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----SCHHHHHHHHHHHT----
T ss_pred hccccE---EEEEeecchhHHHHHH--HHHHHHHHHhcCCCCeEEEEeeccchHhcCc----ccHHHHhhHHHHhC----
Confidence 876655 8999999987666543 22222 36789999999999987654 46677778777765
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++|+++||++|+||+++|+.|.+.+.
T Consensus 150 --~~~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 150 --VMFIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp --CEEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred --CeeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 78999999999999999999987764
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=200.34 Aligned_cols=174 Identities=21% Similarity=0.326 Sum_probs=123.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+|+|++.+. ..++..+++|.+. ..+..++ .+.+|||||+.+.....+..+.+..+..
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTT-EEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCc-cccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 4567999999999999999999998754 5677888888764 3455555 7999999998754322221124443333
Q ss_pred H-HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc--C
Q 021750 200 D-YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ--T 276 (308)
Q Consensus 200 ~-~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 276 (308)
. ++.. ++++++|+|++.+....+..+..++.+.++|+++|+||||+.+... ...+++.+.+...+. .
T Consensus 272 ~~~~~~---ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~ 341 (456)
T 4dcu_A 272 LKAIDR---SEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDE-------STMKEFEENIRDHFQFLD 341 (456)
T ss_dssp HHHHHH---CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCS-------SHHHHHHHHHHHHCGGGT
T ss_pred HHHHhh---CCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCch-------HHHHHHHHHHHHhcccCC
Confidence 2 3333 3559999999999888888888888888999999999999986432 123333444433322 3
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYWLK 307 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~~~ 307 (308)
..+++++||++|+|++++|+++.+.+..+.+
T Consensus 342 ~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 342 YAPILFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp TSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred CCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 4799999999999999999999999877654
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=199.06 Aligned_cols=173 Identities=21% Similarity=0.341 Sum_probs=118.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+|+|++.++ ..++..+|+|.+. ..+.+++ .+.+|||||+.+.....+.-+.+..+..
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~-~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTT-EEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCc-eeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence 3567999999999999999999999764 4577888888764 3445555 7999999998653322111123332322
Q ss_pred -HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc--C
Q 021750 200 -DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ--T 276 (308)
Q Consensus 200 -~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 276 (308)
.++.. ++++++|+|++++.+.++..+...+...++|+++|+||+|+.+... ...+++.+.+...+. .
T Consensus 252 ~~~~~~---ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~-------~~~~~~~~~~~~~l~~~~ 321 (436)
T 2hjg_A 252 LKAIDR---SEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDE-------STMKEFEENIRDHFQFLD 321 (436)
T ss_dssp HHHHHH---CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCT-------THHHHHHHHHHHHCGGGT
T ss_pred HHHHHh---CCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcch-------HHHHHHHHHHHHhcccCC
Confidence 23343 3569999999999998888777777778999999999999986432 112233333333222 3
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
..+++++||++|+|++++++.+.+.+..+.
T Consensus 322 ~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 322 YAPILFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp TSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred CCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence 479999999999999999999999888764
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-24 Score=200.76 Aligned_cols=214 Identities=19% Similarity=0.264 Sum_probs=149.9
Q ss_pred EEcCCCCCcCCCchh--hHHHHhCCCeEEEeecccchhhhhHHHhhcccCCCCCCCCCC--------------CeEEEEc
Q 021750 69 LFVPPETEVSIDDSS--LSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDGL--------------PEFALVG 132 (308)
Q Consensus 69 i~v~~gt~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~~--------------~~I~lvG 132 (308)
|.||+||.+.+.++. +.+...+++++++++||.|| .+|.+|.++.+++|+.++.+. ..|+|+|
T Consensus 86 ~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG-~Gn~~f~~~~~~~p~~~~~g~~g~~~~i~lelk~g~~VgLVG 164 (416)
T 1udx_A 86 IEVPRGTRVFDADTGELLADLTEEGQTVLVARGGAGG-RGNMHFVSPTRQAPRFAEAGEEGEKRRLRLELMLIADVGLVG 164 (416)
T ss_dssp EEECSSEEEEETTTCCEEEEECSTTCEEEEECCCCCC-CCGGGGCCSSCSSCCEEECCCCCCEEEEEEEECCSCSEEEEC
T ss_pred EecCCccEEEecCCCcEEeeccCCCceEEEecCCCCC-cccceeecccccCcccccCCCCceEeeeeeEEcCCCEEEEEC
Confidence 999999999987665 45566779999999999885 999999999999998665553 4799999
Q ss_pred CCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeC--CCEEEecCCCcccCC-CchhhhhchHHHHHHHHHhcCC
Q 021750 133 RSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIN--DSWYLVDLPGYGYAA-APRELRTDWDKFTKDYFLNRST 207 (308)
Q Consensus 133 ~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~--~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 207 (308)
.+|||||||+++|++... .+...+.+|.. ...+..+ ..++++|+||+.+.. ....+. ..++.....
T Consensus 165 ~~gAGKSTLL~~Lsg~~~--~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~-------~~fl~~~er 235 (416)
T 1udx_A 165 YPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLG-------LEFLRHIAR 235 (416)
T ss_dssp CGGGCHHHHHHHHCSSCC--EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSC-------HHHHHHHTS
T ss_pred CCCCcHHHHHHHHHcCCc--cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhh-------HHHHHHHHH
Confidence 999999999999998742 33444444432 3344444 368999999986531 111111 122333344
Q ss_pred ccEEEEEEeCCCCCChhHH-----HHHHHhc-cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021750 208 LVSVFLLIDASIPAKPIDL-----EYASWLG-QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 208 ~~~vl~viD~~~~~~~~~~-----~l~~~~~-~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
++.+++++|.+ .....+. ++..+.. ...+|.++|+||+|+... +.++.+.+.+.. ...+++
T Consensus 236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---------~~~~~l~~~l~~---~g~~vi 302 (416)
T 1udx_A 236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---------EAVKALADALAR---EGLAVL 302 (416)
T ss_dssp SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---------HHHHHHHHHHHT---TTSCEE
T ss_pred HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---------HHHHHHHHHHHh---cCCeEE
Confidence 56799999997 2222111 1222211 136899999999998742 334455444432 246899
Q ss_pred EeecCCCCCHHHHHHHHHHHHHHH
Q 021750 282 MTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
++||++++|+++++++|.+.+.+.
T Consensus 303 ~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 303 PVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred EEECCCccCHHHHHHHHHHHHHhc
Confidence 999999999999999999988653
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=172.14 Aligned_cols=160 Identities=15% Similarity=0.122 Sum_probs=105.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++..+ ....+.++.+.....+.+++ .+.+|||||.... .+..+...+
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~ 74 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQE-RDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL--------DKSWSQESC 74 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC---------------CHHHHHT
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCC-ccccCccccceeEEEEEECCEEEEEEEEecCCCCcc--------chhhhHHhh
Confidence 46999999999999999999999765 34455677776666666665 5789999996421 012233343
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+.. ++++++|+|.++..+.... .+...+. ..++|+++|+||+|+.+.++ +..+..+.+....+
T Consensus 75 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~----v~~~~~~~~~~~~~----- 142 (175)
T 2nzj_A 75 LQG---GSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCRE----VSVEEGRACAVVFD----- 142 (175)
T ss_dssp TTS---CSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCC----SCHHHHHHHHHHHT-----
T ss_pred ccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccc----cCHHHHHHHHHHcC-----
Confidence 333 4568999999876554432 1222222 24799999999999986543 23444444444432
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+++++||++|+|+++++++|.+.+...+
T Consensus 143 -~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 143 -CKFIETSATLQHNVAELFEGVVRQLRLRR 171 (175)
T ss_dssp -SEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred -CeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999887654
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-23 Score=188.23 Aligned_cols=166 Identities=23% Similarity=0.291 Sum_probs=122.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeC-C-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIN-D-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~-~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
.-.|+++|.+|||||||+|+|++.+. ..++..+++|+.. ..+..+ + ++.+|||||+........++..+......
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~-~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~ 88 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKV-SIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQ 88 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCC-SCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCc-cccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHH
Confidence 34899999999999999999999864 5677888887653 334444 4 79999999997644223344455555666
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHH-HHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCC
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEY-ASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPP 279 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l-~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (308)
++.. +|++++|+|++++.+..+..+ ...+...++|+++|+||+|+..... ......+.+.+.+....+
T Consensus 89 ~l~~---aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~--------~~~~~~~~l~~~~~~~~~ 157 (308)
T 3iev_A 89 SLEE---ADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAK--------NVLPLIDEIHKKHPELTE 157 (308)
T ss_dssp HHHH---CSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGG--------GGHHHHHHHHHHCTTCCC
T ss_pred Hhhc---CCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHH--------HHHHHHHHHHHhccCCCe
Confidence 6654 455999999999888877766 6777777899999999999983221 123333334444334578
Q ss_pred EEEeecCCCCCHHHHHHHHHHHH
Q 021750 280 WIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 280 ~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
++++||++|.|+++++++|.+.+
T Consensus 158 i~~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 158 IVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHS
T ss_pred EEEEeCCCCCCHHHHHHHHHHhC
Confidence 99999999999999999998865
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=176.62 Aligned_cols=160 Identities=19% Similarity=0.236 Sum_probs=110.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.. .+..++.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~~ 93 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE----------RFNSITS 93 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH----------HHHHHHH
Confidence 3456999999999999999999999866545556666666666666665 68999999953 4555777
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHH---HhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYAS---WLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~---~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++..++ ++++|+|++++.+..+. .+.. .....++|+++|+||+|+.+.++ +..+..+.+.+.+
T Consensus 94 ~~~~~~d---~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~----v~~~~~~~~~~~~----- 161 (192)
T 2il1_A 94 AYYRSAK---GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDRE----ITRQQGEKFAQQI----- 161 (192)
T ss_dssp HHHHHCS---EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----SCHHHHHHHHHTS-----
T ss_pred HHhcCCC---EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc----cCHHHHHHHHHhc-----
Confidence 7776654 48999999976554432 1111 12235799999999999976433 2334444443322
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
...+++++||++|+|+++++++|.+.+.+
T Consensus 162 ~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 162 TGMRFCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 13789999999999999999999987653
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=171.69 Aligned_cols=156 Identities=13% Similarity=0.120 Sum_probs=96.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||+++|++... ....+.++++.. ..+.+++ .+.+|||||.. .+..+...+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~~~ 69 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD----------GGRWLPGHC 69 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEE-EEEEETTEEEEEEEEECC----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccc-cCCCCccccceE-EEEEECCEEEEEEEEECCCCc----------cchhhhhhh
Confidence 46999999999999999999998654 455666777664 3334444 58899999964 233355566
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHh----ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWL----GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~----~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+..+ +++++|+|.+++.+.... .+...+ ...++|+++|+||+|+.+... +..+..+.+....
T Consensus 70 ~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~------ 136 (166)
T 3q72_A 70 MAMG---DAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE----VSVDEGRACAVVF------ 136 (166)
T ss_dssp ---C---CEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCC----SCHHHHHHHHHHT------
T ss_pred hhhC---CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccc----cCHHHHHHHHHHh------
Confidence 5544 458999999976554332 111111 125799999999999986543 2344444444443
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
..+++++||++|+|++++|++|.+.+..+
T Consensus 137 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 137 DCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp TCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999999999999988765
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-23 Score=168.18 Aligned_cols=155 Identities=17% Similarity=0.222 Sum_probs=109.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+++|++..+.....++.+.. ....+.+++ .+.+|||||.. .+..++..++
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~~ 72 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTE----------QFASMRDLYI 72 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTT----------CCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCch----------hhHHHHHHHh
Confidence 589999999999999999999876543333333322 234445554 48899999953 3445666776
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..++ ++++|+|.+++.+.... ++..+....++|+++|+||+|+.+..+ +..+..+.+.+..+
T Consensus 73 ~~~~---~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~------ 139 (167)
T 1kao_A 73 KNGQ---GFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESERE----VSSSEGRALAEEWG------ 139 (167)
T ss_dssp HHCS---EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC----SCHHHHHHHHHHHT------
T ss_pred ccCC---EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccccc----CCHHHHHHHHHHhC------
Confidence 6654 48999999876543332 222333335899999999999975433 23444555554443
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.+++++||++|.|+++++++|.+.+.+
T Consensus 140 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 140 CPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp SCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 689999999999999999999988765
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-23 Score=175.11 Aligned_cols=164 Identities=15% Similarity=0.209 Sum_probs=108.1
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHH
Q 021750 119 DCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDK 196 (308)
Q Consensus 119 ~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~ 196 (308)
..+....++|+++|.+|||||||+++|++..+.. ...++.+. ....+...+ .+.+|||||.. .+..
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~Dt~G~~----------~~~~ 78 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGY--NVETFEKGRVAFTVFDMGGAK----------KFRG 78 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSE--EEEEEEETTEEEEEEEECCSG----------GGGG
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccce--eEEEEEeCCEEEEEEECCCCH----------hHHH
Confidence 3445566799999999999999999999987543 33455553 333444444 79999999964 2333
Q ss_pred HHHHHHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc----------CCCCEEEEeecCCCCCcccCCCCCchhhHH
Q 021750 197 FTKDYFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ----------NQIPMTLVFTKCDKRKKKKNGGKRPEENLN 264 (308)
Q Consensus 197 ~~~~~~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~----------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~ 264 (308)
++..|+. .++++++|+|++++.+.... .+..++.. .++|+++|+||+|+..... .+
T Consensus 79 ~~~~~~~---~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---------~~ 146 (199)
T 4bas_A 79 LWETYYD---NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT---------AA 146 (199)
T ss_dssp GGGGGCT---TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC---------HH
T ss_pred HHHHHHh---cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC---------HH
Confidence 4444443 45569999999987665443 22223222 2899999999999986532 22
Q ss_pred HHHHHHHhh---hcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 265 DFQELIQGF---FQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 265 ~~~~~~~~~---~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
++.+.+... -...++++++||++|+|++++|++|.+.+....
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 147 ELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp HHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 232222211 123478999999999999999999999887654
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-23 Score=170.50 Aligned_cols=162 Identities=14% Similarity=0.193 Sum_probs=110.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
....++|+++|.+|||||||+++|++..+.....++.+.... ..+.+++ .+.+|||||... +..++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~----------~~~~~ 74 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEE----------FGAMR 74 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTT----------TSCCH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchh----------hHHHH
Confidence 345679999999999999999999997543333333333222 3444554 588999999642 22245
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
..++..++ ++++|+|.++..+.... ++.......++|+++|+||+|+.+.+. +..+..+.+....
T Consensus 75 ~~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----v~~~~~~~~~~~~--- 144 (181)
T 2fn4_A 75 EQYMRAGH---GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ----VPRSEASAFGASH--- 144 (181)
T ss_dssp HHHHHHCS---EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC----SCHHHHHHHHHHT---
T ss_pred HHHHhhCC---EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccc----cCHHHHHHHHHHc---
Confidence 56666544 48999999876544332 122222346899999999999976443 2334444443332
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWLK 307 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~~ 307 (308)
..+++++||++|.|+++++++|.+.+.++.+
T Consensus 145 ---~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 145 ---HVAYFEASAKLRLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp ---TCEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred ---CCeEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 3789999999999999999999998876553
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-23 Score=173.64 Aligned_cols=161 Identities=17% Similarity=0.204 Sum_probs=111.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...+||+++|.+|||||||+++|++.++.....++.+.+.....+.+++ .+.+|||||... +..++.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 88 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES----------FRSITR 88 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGG----------TSCCCH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchh----------hhhhHH
Confidence 3456999999999999999999999876444455556666666666665 689999999542 222344
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++.. ++++++|+|+++..+..+. .+...+. ..++|+++|+||+|+.+.+. +..+..+.+.+..+
T Consensus 89 ~~~~~---~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----v~~~~~~~~~~~~~---- 157 (191)
T 2a5j_A 89 SYYRG---AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRD----VKREEGEAFAREHG---- 157 (191)
T ss_dssp HHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----SCHHHHHHHHHHHT----
T ss_pred HHhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccc----cCHHHHHHHHHHcC----
Confidence 55554 4559999999876544332 1111121 25799999999999975433 23445555554443
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+++++||++|+|++++|++|.+.+.+..
T Consensus 158 --~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 158 --LIFMETSAKTACNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp --CEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred --CEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999988776543
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-23 Score=174.29 Aligned_cols=161 Identities=17% Similarity=0.215 Sum_probs=113.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
+..++|+++|.+|||||||+++|++..+.....++.+.+.....+..++ .+.+|||||..... ..+.
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~ 89 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYR----------TITT 89 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSC----------CSGG
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHh----------hhHH
Confidence 3457999999999999999999999876545556667666655555544 68999999964311 1233
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++. .++++++|+|++++.+.... .+...+. ..++|+++|+||+|+.+.+. +..+..+++.+.++
T Consensus 90 ~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~---- 158 (189)
T 2gf9_A 90 AYYR---GAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERV----VPAEDGRRLADDLG---- 158 (189)
T ss_dssp GGGT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----SCHHHHHHHHHHHT----
T ss_pred Hhcc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccC----CCHHHHHHHHHHcC----
Confidence 3333 34569999999876544332 1222222 24799999999999976433 23455566655543
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+++++||++|.|+++++++|.+.+.+..
T Consensus 159 --~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 187 (189)
T 2gf9_A 159 --FEFFEASAKENINVKQVFERLVDVICEKM 187 (189)
T ss_dssp --CEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred --CeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999876654
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-23 Score=169.79 Aligned_cols=158 Identities=13% Similarity=0.128 Sum_probs=100.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHH-HHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDK-FTKD 200 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~-~~~~ 200 (308)
.+||+++|.+|||||||+++|++..........++.......+.+++ .+.+|||||... +.. +...
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~ 71 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD----------AGGWLQDH 71 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC------------------CH
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccc----------cchhhhhh
Confidence 46999999999999999999997654333333333333344455555 578999999642 211 3334
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
++..+ +++++|+|.+++.+.... .+..... ..++|+++|+||+|+.+... +..+..+.+.+..+
T Consensus 72 ~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~~---- 140 (169)
T 3q85_A 72 CLQTG---DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSRE----VSLEEGRHLAGTLS---- 140 (169)
T ss_dssp HHHHC---SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCC----SCHHHHHHHHHHTT----
T ss_pred hhccC---CEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhccc----CCHHHHHHHHHHcC----
Confidence 44443 458999999876544332 1111111 24799999999999975443 34455555554443
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.+++++||++|+|++++|+++.+.+...
T Consensus 141 --~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 141 --CKHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp --CEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred --CcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999999887653
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-23 Score=169.20 Aligned_cols=158 Identities=18% Similarity=0.249 Sum_probs=113.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
+..++|+++|.+|||||||+++|++..+.....++.+.+.....+..++ .+.+|||||.. .+...+.
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~ 82 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE----------RFRAVTR 82 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG----------GTCHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCCh----------HhhhhHH
Confidence 3457999999999999999999999876544555666666555666654 68999999953 3444666
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHH-HHH---HhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLE-YAS---WLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~-l~~---~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++..++ ++++|+|++++.+..+.. +.. .....++|+++|+||+|+.+... +..+.++++.+..
T Consensus 83 ~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~----- 150 (179)
T 1z0f_A 83 SYYRGAA---GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRD----VTYEEAKQFAEEN----- 150 (179)
T ss_dssp HHHHTCS---EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----SCHHHHHHHHHHT-----
T ss_pred HHhccCC---EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc----cCHHHHHHHHHHc-----
Confidence 7766554 589999998765443321 111 11236799999999999975433 2334444444433
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++++||++|+|++++|++|.+.+.
T Consensus 151 -~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 151 -GLLFLEASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp -TCEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred -CCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 378999999999999999999988763
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-23 Score=174.77 Aligned_cols=160 Identities=18% Similarity=0.183 Sum_probs=109.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
+..++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.. ++..++.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 96 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE----------RFRTITQ 96 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCG----------GGHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcH----------hHHHHHH
Confidence 3457999999999999999999998765433444444444455566655 68999999953 4555777
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.|+..+ +++++|+|+++..+.... .+...+. ..++|+++|+||+|+.+.+. +..+.++++.+.++
T Consensus 97 ~~~~~~---d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----v~~~~~~~~~~~~~---- 165 (201)
T 2hup_A 97 SYYRSA---NGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELRE----VSLAEAQSLAEHYD---- 165 (201)
T ss_dssp HHHTTC---SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----SCHHHHHHHHHHTT----
T ss_pred HHHhhC---CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccc----cCHHHHHHHHHHcC----
Confidence 777654 458999999876544332 1111121 25799999999999976432 23444555544432
Q ss_pred CCC-CEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 276 TAP-PWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 276 ~~~-~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
. +++++||++|+|++++|++|.+.+...
T Consensus 166 --~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 166 --ILCAIETSAKDSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp --CSEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred --CCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 5 899999999999999999999887654
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=169.37 Aligned_cols=171 Identities=23% Similarity=0.360 Sum_probs=119.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCC-chhhhhchHHHHHHHHHh
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAA-PRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~-~~~~~~~~~~~~~~~~~~ 204 (308)
++|+++|.+|||||||+++|++..+. ....++++.....+.++ .+.+|||||+..... .......+..++..|+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR--RGKRPGVTRKIIEIEWK-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED 78 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS--SSSSTTCTTSCEEEEET-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc--cCCCCCccceeEEEecC-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999997642 44556666655555554 899999999754211 111123566778888887
Q ss_pred -cCCccEEEEEEeCCCCCCh-----------hHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 205 -RSTLVSVFLLIDASIPAKP-----------IDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 205 -~~~~~~vl~viD~~~~~~~-----------~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
.+.++++++|+|..+.... .+.++...+...++|+++|+||+|+.... .+..+++.+.++.
T Consensus 79 ~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------~~~~~~~~~~~~~ 151 (190)
T 2cxx_A 79 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-------QEVINFLAEKFEV 151 (190)
T ss_dssp HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-------HHHHHHHHHHHTC
T ss_pred hhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-------HHHHHHHHHHhhh
Confidence 8888889999998643211 12233444445689999999999997632 3345556555542
Q ss_pred hhc-CCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 273 FFQ-TAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 273 ~~~-~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+. ...+++++||++|+|+++++++|.+.+.+.+
T Consensus 152 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 152 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred hhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 110 0135899999999999999999999886644
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=7e-23 Score=172.33 Aligned_cols=161 Identities=20% Similarity=0.264 Sum_probs=114.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
+..++|+++|.+|||||||+++|++..+.....+..+.+.....+.+++ .+.+|||||.. .+..++.
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 83 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE----------RFRTITS 83 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG----------GGCTTHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcH----------hhhhhHH
Confidence 3457999999999999999999999765444445555555556666665 58899999953 2333555
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++..+ +++++|+|+++..+.... .+...+ ...++|+++|+||+|+.+... +..+..+.+.+.++
T Consensus 84 ~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~~---- 152 (196)
T 3tkl_A 84 SYYRGA---HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKV----VDYTTAKEFADSLG---- 152 (196)
T ss_dssp HHHTTC---SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----SCHHHHHHHHHHTT----
T ss_pred HHHhhC---CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccc----cCHHHHHHHHHHcC----
Confidence 666544 459999999976543332 111111 124789999999999986543 23344555554443
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+++++||++|.|++++|++|.+.+....
T Consensus 153 --~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 153 --IPFLETSAKNATNVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp --CCEEEECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred --CcEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999887653
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=172.69 Aligned_cols=158 Identities=16% Similarity=0.211 Sum_probs=114.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++..+.....++.+.+.....+..++ .+.+|||||.. .+..++..+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~~ 77 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE----------RYRTITTAY 77 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch----------hhcchHHHh
Confidence 46999999999999999999999876444555666666555555554 68999999963 344566666
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+..+ +++++|+|++++.+.... .+...+. ..++|+++|+||+|+.+... +..+..+.+.+.++
T Consensus 78 ~~~~---d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~------ 144 (203)
T 1zbd_A 78 YRGA---MGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----VSSERGRQLADHLG------ 144 (203)
T ss_dssp GGGC---SEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCC----SCHHHHHHHHHHHT------
T ss_pred hcCC---CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccc----cCHHHHHHHHHHCC------
Confidence 5544 459999999876544332 1111221 25799999999999976443 24455566655543
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.+++++||++|.|++++|++|.+.+.+.
T Consensus 145 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 145 FEFFEASAKDNINVKQTFERLVDVICEK 172 (203)
T ss_dssp CEEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999877543
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=168.41 Aligned_cols=158 Identities=16% Similarity=0.210 Sum_probs=111.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...+||+++|.+|||||||+++|++..+.....++.+... ...+..++ .+.+|||||.. .+..++.
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 84 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQE----------EFSAMRE 84 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCG----------GGCSSHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCch----------hhHHHHH
Confidence 4457999999999999999999998755433334333333 34444554 36679999954 2233555
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
.++..++ ++++|+|.+++.+.... .+.......++|+++|+||+|+.+.+. +..+..+.+.+.++
T Consensus 85 ~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----v~~~~~~~~~~~~~--- 154 (183)
T 3kkq_A 85 QYMRTGD---GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK----VTRDQGKEMATKYN--- 154 (183)
T ss_dssp HHHHHCS---EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC----SCHHHHHHHHHHHT---
T ss_pred HHHhcCC---EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccC----cCHHHHHHHHHHhC---
Confidence 6666654 48999999976444332 222333346899999999999976443 34555666666554
Q ss_pred cCCCCEEEeecC-CCCCHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSV-TNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 275 ~~~~~~~~vSA~-~g~gi~el~~~i~~~~~~ 304 (308)
.+++++||+ +|+|++++|++|.+.+.+
T Consensus 155 ---~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 155 ---IPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp ---CCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred ---CeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 789999999 999999999999988754
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=6e-23 Score=174.92 Aligned_cols=160 Identities=20% Similarity=0.240 Sum_probs=112.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
+..++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.. .+..++.
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~~ 93 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE----------RFRSITQ 93 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHHG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHH
Confidence 3357999999999999999999999765444444555555555666665 68999999953 3444555
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++.. ++++++|+|+++..+.... .+...+ ...++|+++|+||+|+.+.++ +..+..+.+.+..+
T Consensus 94 ~~~~~---~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----v~~~~~~~~~~~~~---- 162 (201)
T 2ew1_A 94 SYYRS---ANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERRE----VSQQRAEEFSEAQD---- 162 (201)
T ss_dssp GGSTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----SCHHHHHHHHHHHT----
T ss_pred HHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc----cCHHHHHHHHHHcC----
Confidence 55543 4569999999876544332 111111 235789999999999975433 23445555554432
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.+++++||++|+|++++|++|.+.+...
T Consensus 163 --~~~~~~Sa~~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 163 --MYYLETSAKESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp --CCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred --CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 7899999999999999999999877654
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-23 Score=172.47 Aligned_cols=159 Identities=23% Similarity=0.235 Sum_probs=110.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
+..++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||..... .++.
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~ 76 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFR----------TITS 76 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCS----------SCCG
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhh----------hhHH
Confidence 4557999999999999999999999865433444444445555666665 58999999954211 1223
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
.++. .++++++|+|++++.+.... ..|+. ..++|+++|+||+|+.+... +..+....+....+
T Consensus 77 ~~~~---~~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~~--- 144 (181)
T 3tw8_B 77 TYYR---GTHGVIVVYDVTSAESFVNV--KRWLHEINQNCDDVCRILVGNKNDDPERKV----VETEDAYKFAGQMG--- 144 (181)
T ss_dssp GGGT---TCSEEEEEEETTCHHHHHHH--HHHHHHHHHHCTTSEEEEEEECTTCGGGCC----SCHHHHHHHHHHHT---
T ss_pred HHhc---cCCEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCEEEEEECCCCchhcc----cCHHHHHHHHHHcC---
Confidence 3333 34569999999986544432 22332 24689999999999876543 23344555554443
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+++++||++|.|+++++++|.+.+...+
T Consensus 145 ---~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (181)
T 3tw8_B 145 ---IQLFETSAKENVNVEEMFNCITELVLRAK 173 (181)
T ss_dssp ---CCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred ---CeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999887654
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-22 Score=171.16 Aligned_cols=161 Identities=17% Similarity=0.201 Sum_probs=112.2
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHH
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKF 197 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 197 (308)
+....++|+++|.+|||||||+++|++..+.....++.+... ...+.+++ .+.+|||||.. .+..+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~ 78 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQE----------DYAAI 78 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTT----------CCHHH
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChh----------hhHHH
Confidence 344567999999999999999999998765333333333332 23444554 68899999953 34556
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 198 TKDYFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
+..|+...+. +++|+|+++..+.... .+..+....++|+++|+||+|+.+..+ +..+.+..+.+.++
T Consensus 79 ~~~~~~~~~~---~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~- 150 (206)
T 2bov_A 79 RDNYFRSGEG---FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----VSVEEAKNRAEQWN- 150 (206)
T ss_dssp HHHHHHHCSE---EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCC----SCHHHHHHHHHHHT-
T ss_pred HHHHHhhCCE---EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccccc----ccHHHHHHHHHHhC-
Confidence 7777776554 8999999876544332 122222234899999999999976443 23444555554432
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.+++++||++|.|++++|++|.+.+.+.
T Consensus 151 -----~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 151 -----VNYVETSAKTRANVDKVFFDLMREIRAR 178 (206)
T ss_dssp -----CEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred -----CeEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 6899999999999999999999887654
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-23 Score=172.99 Aligned_cols=160 Identities=24% Similarity=0.287 Sum_probs=109.4
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchH-HH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWD-KF 197 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~-~~ 197 (308)
....++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.. ++. .+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 86 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE----------RFRKSM 86 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH----------HHHTTT
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCch----------hhhhhh
Confidence 34457999999999999999999998766444555566665555666655 68999999953 233 35
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 198 TKDYFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
+..|+.. ++++++|+|+++..+.... ++.......++|+++|+||+|+.+.++ +..+..+.+.+..
T Consensus 87 ~~~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----v~~~~~~~~~~~~-- 157 (189)
T 1z06_A 87 VQHYYRN---VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----VPTDLAQKFADTH-- 157 (189)
T ss_dssp HHHHHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC----SCHHHHHHHHHHT--
T ss_pred hHHHhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccce----eCHHHHHHHHHHc--
Confidence 5566554 4559999999876443332 222233246899999999999976433 2344444444433
Q ss_pred hhcCCCCEEEeecCCC---CCHHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTN---QGRDEILLHMAQLRNY 304 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g---~gi~el~~~i~~~~~~ 304 (308)
..+++++||++| +|++++|++|.+.+.+
T Consensus 158 ----~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 158 ----SMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp ----TCCEEECCSSSGGGGSCHHHHHHHHC-----
T ss_pred ----CCEEEEEeCCcCCcccCHHHHHHHHHHHHhh
Confidence 368999999999 9999999999877643
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.2e-23 Score=172.26 Aligned_cols=161 Identities=19% Similarity=0.192 Sum_probs=111.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+++|++..+.....++.+.+.....+..++ .+.+|||||... +..++.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 92 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER----------YRAITS 92 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCT----------TCTTHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchh----------hhhhhH
Confidence 3347999999999999999999999865444445556655555555543 688999999742 223555
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++..+ +++++|+|++++.+.... .+...+. ..++|+++|+||+|+...+. +..+..+.+.+..
T Consensus 93 ~~~~~~---d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~----- 160 (193)
T 2oil_A 93 AYYRGA---VGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQARE----VPTEEARMFAENN----- 160 (193)
T ss_dssp HHHTTC---CEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCC----SCHHHHHHHHHHT-----
T ss_pred HHhccC---CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccc----cCHHHHHHHHHHc-----
Confidence 665544 458999999876543322 1122221 24789999999999976432 2334444444332
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.++++++||++|+|+++++++|.+.+.+..
T Consensus 161 -~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 161 -GLLFLETSALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp -TCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 368999999999999999999998776543
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=168.90 Aligned_cols=161 Identities=20% Similarity=0.227 Sum_probs=112.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE-EEEEEeCC------------CEEEecCCCcccCCCchh
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC-INHFRIND------------SWYLVDLPGYGYAAAPRE 189 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~-~~~~~~~~------------~~~liDtpG~~~~~~~~~ 189 (308)
+..++|+++|.+|||||||+++|++..+.....++.+.+.. ...+..++ .+.+|||||..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~------- 81 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE------- 81 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG-------
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH-------
Confidence 34579999999999999999999987654444444454443 33444432 58899999963
Q ss_pred hhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc----cCCCCEEEEeecCCCCCcccCCCCCchhhHH
Q 021750 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLN 264 (308)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~ 264 (308)
.+...+..++.. ++++++|+|++++.+..+. .+...+. ..++|+++|+||+|+.+... +..+.++
T Consensus 82 ---~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~ 151 (195)
T 3bc1_A 82 ---RFRSLTTAFFRD---AMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRA----VKEEEAR 151 (195)
T ss_dssp ---GGHHHHHHTTTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCC----SCHHHHH
T ss_pred ---HHHHHHHHHHcC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccc----cCHHHHH
Confidence 344566565544 4569999999876554432 1122121 15899999999999976432 2345555
Q ss_pred HHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 265 DFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
++.+..+ .+++++||++|.|+++++++|.+.+.+..
T Consensus 152 ~~~~~~~------~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 152 ELAEKYG------IPYFETSAANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp HHHHHHT------CCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHcC------CCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 5555443 68999999999999999999998876544
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-23 Score=175.67 Aligned_cols=159 Identities=18% Similarity=0.265 Sum_probs=113.6
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHH
Q 021750 120 CPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDK 196 (308)
Q Consensus 120 ~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~ 196 (308)
......++|+++|.+|||||||+++|++..+...+.++.+.+.....+..++ .+.+|||||.. .+..
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~ 87 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE----------RFHS 87 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG----------GGGG
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch----------hhHh
Confidence 3334557999999999999999999999876556677788777666666554 68999999953 2333
Q ss_pred HHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHH
Q 021750 197 FTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELI 270 (308)
Q Consensus 197 ~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 270 (308)
.+..++..+ +++++|+|++++.+.... ..|+. ..++|+++|+||+|+.+.+. +..+.++++.+.+
T Consensus 88 ~~~~~~~~~---d~iilV~d~~~~~s~~~~--~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----v~~~~~~~~~~~~ 158 (192)
T 2fg5_A 88 LAPMYYRGS---AAAVIVYDITKQDSFYTL--KKWVKELKEHGPENIVMAIAGNKCDLSDIRE----VPLKDAKEYAESI 158 (192)
T ss_dssp GTHHHHTTC---SEEEEEEETTCTHHHHHH--HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----SCHHHHHHHHHTT
T ss_pred hhHHhhccC---CEEEEEEeCCCHHHHHHH--HHHHHHHHHhCCCCCcEEEEEECcccccccc----cCHHHHHHHHHHc
Confidence 455565544 459999999876554432 22322 24799999999999975332 2334444444332
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++++||++|.|+++++++|.+.+.
T Consensus 159 ------~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 159 ------GAIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp ------TCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred ------CCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 378999999999999999999988654
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=165.30 Aligned_cols=155 Identities=16% Similarity=0.223 Sum_probs=107.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++..+.....++.+... ...+..++ .+.+|||||.. ++..++..+
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~ 72 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQE----------DYAAIRDNY 72 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-------------CHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcc----------hhHHHHHHH
Confidence 36999999999999999999999765333333333332 23344444 68899999953 344567777
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+..++ ++++|+|+++..+.... ++.......++|+++|+||+|+.+..+ +..+....+.+..+
T Consensus 73 ~~~~d---~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~----- 140 (168)
T 1u8z_A 73 FRSGE---GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----VSVEEAKNRADQWN----- 140 (168)
T ss_dssp HHHCS---EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC----SCHHHHHHHHHHHT-----
T ss_pred hhcCC---EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCc----cCHHHHHHHHHHcC-----
Confidence 76655 48999999976544332 122222235899999999999976443 23444555544432
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.+++++||++|.|+++++++|.+.+.
T Consensus 141 -~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 141 -VNYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp -CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -CeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999998764
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-22 Score=172.50 Aligned_cols=163 Identities=22% Similarity=0.274 Sum_probs=106.5
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
....++|+++|.+|||||||+++|++..+...+.++.+.+.....+.+++ .+.+|||||.. .+...+
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~ 94 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE----------RFRSIA 94 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCT----------TCHHHH
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCc----------chhhhH
Confidence 44567999999999999999999999876555566666666555666655 58899999953 344567
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHHH-HHHHh---ccCCCCEEEEeecCCCCCccc--CCCCCchhhHHHHHHHHHh
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDLE-YASWL---GQNQIPMTLVFTKCDKRKKKK--NGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~~-l~~~~---~~~~~pvivV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~ 272 (308)
..++..++ ++++|+|++++.+..+.. +...+ ...++|+++|+||+|+..... ....+..+..+.+.+..+
T Consensus 95 ~~~~~~~d---~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~- 170 (199)
T 2p5s_A 95 KSYFRKAD---GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG- 170 (199)
T ss_dssp HHHHHHCS---EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-
T ss_pred HHHHhhCC---EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcC-
Confidence 77776654 489999998765544321 11112 124799999999999963211 111134455555555443
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++++++||++|+|++++|++|.+.+.
T Consensus 171 -----~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 171 -----ALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp -----CEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred -----CeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999988764
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-23 Score=174.99 Aligned_cols=161 Identities=17% Similarity=0.206 Sum_probs=116.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
+..+||+|+|.+|||||||+++|++..+.....++.+.+.....+..++ .+.+|||||.. .+..++.
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 90 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE----------RYRTITT 90 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHH----------HCHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH----------HHHHHHH
Confidence 4467999999999999999999998765444555556666665665544 58999999942 4555666
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++..+ +++++|+|+++..+.... .+...+. ..++|+++|+||+|+.+.+. +..+..+.+.+.++
T Consensus 91 ~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~---- 159 (191)
T 3dz8_A 91 AYYRGA---MGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERV----VPTEKGQLLAEQLG---- 159 (191)
T ss_dssp HHHTTC---CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----SCHHHHHHHHHHHT----
T ss_pred HHHccC---CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc----cCHHHHHHHHHHcC----
Confidence 766654 458999999876544332 1222222 25899999999999976543 24455566655553
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+++++||++|.|++++|++|.+.+.+..
T Consensus 160 --~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 160 --FDFFEASAKENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp --CEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred --CeEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999876543
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-23 Score=167.92 Aligned_cols=155 Identities=17% Similarity=0.284 Sum_probs=112.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.. .+..++..+
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~~~ 75 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE----------RFRALAPMY 75 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGTHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch----------hhhcccHhh
Confidence 36999999999999999999999876555667777777666666654 68899999963 233345555
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+..+ +++++|+|++++.+.... .+...+ .....|+++|+||+|+.+..+ +..+..+.+.+.. .
T Consensus 76 ~~~~---~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~----v~~~~~~~~~~~~------~ 142 (170)
T 1z0j_A 76 YRGS---AAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----VMERDAKDYADSI------H 142 (170)
T ss_dssp HTTC---SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----SCHHHHHHHHHHT------T
T ss_pred CcCC---CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccc----cCHHHHHHHHHHc------C
Confidence 5544 458999999876554432 122222 235789999999999986443 2344455544433 3
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+++++||++|.|+++++++|.+.+
T Consensus 143 ~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 143 AIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 7899999999999999999998764
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-22 Score=167.51 Aligned_cols=160 Identities=16% Similarity=0.201 Sum_probs=111.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+... ...+..++ .+.+|||||.. .+..++..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~ 85 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQE----------DYAAIRDN 85 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTT----------CCHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCc----------ccHHHHHH
Confidence 346999999999999999999998765333333333322 23344444 58899999953 34456777
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
++..++ ++++|+|+++..+.... ++..+....++|+++|+||+|+.+... +..+.+..+.+.+
T Consensus 86 ~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~----- 153 (187)
T 2a9k_A 86 YFRSGE---GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----VSVEEAKNRAEQW----- 153 (187)
T ss_dssp HHHHCS---EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC----SCHHHHHHHHHHT-----
T ss_pred HhccCC---EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc----cCHHHHHHHHHHc-----
Confidence 777655 48999999876543332 222222335899999999999976433 2334444444333
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYWLK 307 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~~ 307 (308)
..+++++||++|.|+++++++|.+.+.+.+.
T Consensus 154 -~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 184 (187)
T 2a9k_A 154 -NVNYVETSAKTRANVDKVFFDLMREIRARKM 184 (187)
T ss_dssp -TCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred -CCeEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 3689999999999999999999998876543
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=167.73 Aligned_cols=157 Identities=19% Similarity=0.247 Sum_probs=108.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+|+|++..+.....++.+ +.....+..++ .+.+|||||... +..++..|
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~ 72 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEE----------YSAMRDQY 72 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC-------------CTTHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHH----------HHHHHHHH
Confidence 46999999999999999999998764333333322 22233444444 477899999542 23355666
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+..++ ++++|+|.++..+.... .+..+....+.|+++|+||+|+.+.. +..+..+.+.+.++
T Consensus 73 ~~~~~---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----~~~~~~~~~~~~~~----- 139 (189)
T 4dsu_A 73 MRTGE---GFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-----VDTKQAQDLARSYG----- 139 (189)
T ss_dssp HHHCS---EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCS-----SCHHHHHHHHHHHT-----
T ss_pred HhcCC---EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccc-----cCHHHHHHHHHHcC-----
Confidence 66654 48999999876544332 12222233689999999999998543 24555666665553
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+++++||++|.|+++++++|.+.+....
T Consensus 140 -~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 168 (189)
T 4dsu_A 140 -IPFIETSAKTRQGVDDAFYTLVREIRKHK 168 (189)
T ss_dssp -CCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred -CeEEEEeCCCCCCHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999887654
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=167.90 Aligned_cols=159 Identities=18% Similarity=0.176 Sum_probs=109.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
...++|+++|.+|||||||+++|++..+ ..+.++.|.+. ..+.+++ .+.+|||||.. .+...+..|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~ 80 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNI--KSVQSQGFKLNVWDIGGQR----------KIRPYWRSY 80 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEE--EEEEETTEEEEEEECSSCG----------GGHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEE--EEEEECCEEEEEEECCCCH----------HHHHHHHHH
Confidence 3457999999999999999999998754 45566666443 3444445 78999999953 455567777
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--h
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--F 274 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~ 274 (308)
+..+ +++++|+|+++..+.... .+..++. ..++|+++|+||+|+..... .+++.+.++.. .
T Consensus 81 ~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---------~~~~~~~~~~~~~~ 148 (181)
T 1fzq_A 81 FENT---DILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP---------ASEIAEGLNLHTIR 148 (181)
T ss_dssp HTTC---SEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC---------HHHHHHHTTGGGCC
T ss_pred hCCC---CEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC---------HHHHHHHhCchhcc
Confidence 7654 458999999987655442 2223332 25799999999999976432 23333333211 1
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
....+++++||++|+|++++|++|.+.+.+.+
T Consensus 149 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 180 (181)
T 1fzq_A 149 DRVWQIQSCSALTGEGVQDGMNWVCKNVNAKK 180 (181)
T ss_dssp SSCEEEEECCTTTCTTHHHHHHHHHHTC----
T ss_pred CCceEEEEccCCCCCCHHHHHHHHHHHHHhcc
Confidence 12357999999999999999999998876543
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-23 Score=168.27 Aligned_cols=157 Identities=21% Similarity=0.276 Sum_probs=106.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++.++.....++.+.+.....+.+++ .+.+|||||... +...+..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~ 72 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER----------FRTITTAY 72 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGG----------TSCCCHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChh----------hhhhHHHH
Confidence 46999999999999999999998765443444445445455566554 588999999642 12233445
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+.. ++++++|+|++++.+.... .+...+. ..++|+++|+||+|+.... +..+..+.+.+.++
T Consensus 73 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~------ 138 (170)
T 1g16_A 73 YRG---AMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-----VTADQGEALAKELG------ 138 (170)
T ss_dssp HTT---EEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC-----SCHHHHHHHHHHHT------
T ss_pred hcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCc-----cCHHHHHHHHHHcC------
Confidence 443 4569999999876543332 1111111 2479999999999994322 24455555555443
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.+++++||++|.|+++++++|.+.+.+.
T Consensus 139 ~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 139 IPFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988654
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=168.08 Aligned_cols=160 Identities=20% Similarity=0.207 Sum_probs=106.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
..++|+++|.+|||||||+++|++..+.. ...++.+.+.....+..++ .+.+|||||.. .+...+.
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~ 78 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE----------RFRSVTH 78 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHHH
Confidence 34699999999999999999999976521 2333444444444445555 68999999953 2333444
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++.. ++++++|+|++++.+..+. .+...+. ..++|+++|+||+|+.+... +..+..+.+.+..+
T Consensus 79 ~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~---- 147 (180)
T 2g6b_A 79 AYYRD---AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERV----VKREDGEKLAKEYG---- 147 (180)
T ss_dssp CCGGG---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----SCHHHHHHHHHHHT----
T ss_pred HHccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccc----cCHHHHHHHHHHcC----
Confidence 55544 4569999999876544332 1111111 26799999999999986443 23445555554443
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+++++||++|.|+++++++|.+.+.+..
T Consensus 148 --~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 148 --LPFMETSAKTGLNVDLAFTAIAKELKRRS 176 (180)
T ss_dssp --CCEEECCTTTCTTHHHHHHHHHHHHHC--
T ss_pred --CeEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 68999999999999999999998876543
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-23 Score=166.98 Aligned_cols=157 Identities=26% Similarity=0.332 Sum_probs=104.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
+++|+++|.+|||||||+++|++... ......++++... ..+..++ .+.+|||||...... ....+...+..+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~ 76 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRS-AVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK---WEKKIQEKVDRA 76 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEETTEEEEEEECGGGCSSSS---CCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCe-eeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc---hHHHHHHHHHHH
Confidence 36899999999999999999998753 3455566665432 3344444 799999999764321 111223333344
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
+ ..++++++|+|++++.+..+..+..++...+.|+++|+||+|+.+.. +.++++. .+ + ..+++
T Consensus 77 ~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------~~~~~~~-~~----~-~~~~~ 139 (161)
T 2dyk_A 77 L---EDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE--------LYLGPLY-GL----G-FGDPI 139 (161)
T ss_dssp T---TTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG--------GGCGGGG-GG----S-SCSCE
T ss_pred H---HhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch--------HhHHHHH-hC----C-CCCeE
Confidence 3 34556999999998877777677777777789999999999997642 1122222 11 1 13799
Q ss_pred EeecCCCCCHHHHHHHHHHHH
Q 021750 282 MTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~~ 302 (308)
++||++|+|+++++++|.+.+
T Consensus 140 ~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 140 PTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp ECBTTTTBSHHHHHHHHHHHC
T ss_pred EEecccCCChHHHHHHHHHhC
Confidence 999999999999999998753
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-23 Score=174.58 Aligned_cols=158 Identities=20% Similarity=0.206 Sum_probs=109.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+.+. ...+..++ .+.+|||||..... .++..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~ 73 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYS----------IFPQT 73 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTC----------CCCGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhh----------HHHHH
Confidence 456999999999999999999998766555555655554 44445554 57899999975321 12223
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
++.. ++++++|+|.++..+.... ++.......++|+++|+||+|+.+.+. +..+..+.+.+.++
T Consensus 74 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~~---- 142 (181)
T 3t5g_A 74 YSID---INGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----ISYEEGKALAESWN---- 142 (181)
T ss_dssp GTTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCC----SCHHHHHHHHHHTT----
T ss_pred HHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcce----ecHHHHHHHHHHhC----
Confidence 3333 4569999999976544332 222223345899999999999976443 34555555555543
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.+++++||++|+|++++|++|.+.+..+
T Consensus 143 --~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 143 --AAFLESSAKENQTAVDVFRRIILEAEKM 170 (181)
T ss_dssp --CEEEECCTTSHHHHHHHHHHHHHHHHTC
T ss_pred --CcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999999887653
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.5e-23 Score=167.28 Aligned_cols=155 Identities=19% Similarity=0.236 Sum_probs=108.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++..+.....++.+.+.....+..++ .+.+|||||.. .+...+..+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~~ 75 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE----------RYHSLAPMY 75 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH----------HhhhhhHHh
Confidence 36999999999999999999998765444556666666555565554 68999999953 233355566
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHh-c--cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWL-G--QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~-~--~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+..+ +++++|+|++++.+.... .+...+ . ..+.|+++|+||+|+.+... +..+....+.+.. .
T Consensus 76 ~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----~~~~~~~~~~~~~------~ 142 (170)
T 1r2q_A 76 YRGA---QAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRA----VDFQEAQSYADDN------S 142 (170)
T ss_dssp HTTC---SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----SCHHHHHHHHHHT------T
T ss_pred ccCC---CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccc----cCHHHHHHHHHHc------C
Confidence 5544 458999999876544332 111111 1 25789999999999975432 2333444443332 3
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+++++||++|+|+++++++|.+.+
T Consensus 143 ~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 143 LLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998754
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-22 Score=165.95 Aligned_cols=161 Identities=16% Similarity=0.215 Sum_probs=109.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
...++|+++|.+|||||||+++|++..+.....+..+.+.....+.+++ .+.+|||||...... ++.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~-- 73 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTT----------MRA-- 73 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSC----------SCC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHH----------HHH--
Confidence 4567999999999999999999999764322222222222223344454 788999999643211 111
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--hc----
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--FQ---- 275 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~---- 275 (308)
.....++++++|+|++++......+....+...++|+++|+||+|+.... .+++...+... +.
T Consensus 74 -~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~ 142 (178)
T 2lkc_A 74 -RGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN----------PDRVMQELMEYNLVPEEWG 142 (178)
T ss_dssp -SSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC----------HHHHHHHHTTTTCCBTTTT
T ss_pred -HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC----------HHHHHHHHHhcCcChhHcC
Confidence 22345677999999988776666666666666789999999999997532 12222222211 11
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
...+++++||++|+|+++++++|.+.+..++
T Consensus 143 ~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 143 GDTIFCKLSAKTKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp SSEEEEECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred CcccEEEEecCCCCCHHHHHHHHHHhhhhhc
Confidence 1258999999999999999999999887654
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=166.46 Aligned_cols=155 Identities=21% Similarity=0.298 Sum_probs=110.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.. .+...+..++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~~~ 73 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE----------RFASLAPXYY 73 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCCh----------hhhhhhhhhh
Confidence 5899999999999999999999875444556666666666666655 68999999953 2333556666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
..+ +++++|+|++++.+..+. ..|+. ..+.|+++|+||+|+...... ..+..+..+.+.+..+
T Consensus 74 ~~~---d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~v~~~~~~~~~~~~~----- 142 (170)
T 1ek0_A 74 RNA---QAALVVYDVTKPQSFIKA--RHWVKELHEQASKDIIIALVGNKIDXLQEGGE-RKVAREEGEKLAEEKG----- 142 (170)
T ss_dssp TTC---SEEEEEEETTCHHHHHHH--HHHHHHHHHHSCTTCEEEEEEECGGGGGSSCC-CCSCHHHHHHHHHHHT-----
T ss_pred ccC---cEEEEEEecCChHHHHHH--HHHHHHHHHhcCCCCcEEEEEECCCccccccc-cCCCHHHHHHHHHHcC-----
Confidence 544 458999999976554332 22221 257899999999999764221 1134444555544433
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+++++||++|.|+++++++|.+.+
T Consensus 143 -~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 143 -LLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp -CEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred -CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998654
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=168.91 Aligned_cols=159 Identities=18% Similarity=0.211 Sum_probs=109.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+.+.....+..++ .+.+|||||.. .+...+..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~ 78 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE----------RFRSVTRS 78 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHHHT
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHHHH
Confidence 357999999999999999999998765333333334344445555555 68899999953 34445555
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHH-HH---HHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLE-YA---SWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~-l~---~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
++.. ++++++|+|++++.+..... +. ......++|+++|+||+|+..... +..+....+.+..
T Consensus 79 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~------ 145 (186)
T 2bme_A 79 YYRG---AAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADRE----VTFLEASRFAQEN------ 145 (186)
T ss_dssp TSTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----SCHHHHHHHHHHT------
T ss_pred HHhc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc----cCHHHHHHHHHHc------
Confidence 5543 45699999998765443321 11 112236799999999999975432 2334444443332
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.++++++||++|+|++++|++|.+.+...
T Consensus 146 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 146 ELMFLETSALTGENVEEAFVQCARKILNK 174 (186)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 37899999999999999999999877543
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.9e-23 Score=180.17 Aligned_cols=161 Identities=19% Similarity=0.211 Sum_probs=115.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
+++|+++|.+|||||||+|+|++.. ..+...||+|.. ...+.+++ .+.+|||||+...............+.+.|
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~--~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNAN--QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTS--EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC--CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 3689999999999999999999985 456777888755 34555555 799999999864332100000122355566
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
+.. ..+|++++|+|+++. .....+..++.+.++|+++|+||+|+..... .....+.+.+.++ ++++
T Consensus 79 ~~~-~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~-----~~~~~~~l~~~lg------~~vi 144 (256)
T 3iby_A 79 VID-LEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHRG-----ISIDTEKLESLLG------CSVI 144 (256)
T ss_dssp HHH-SCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHTT-----CEECHHHHHHHHC------SCEE
T ss_pred Hhh-CCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcCC-----cHHHHHHHHHHcC------CCEE
Confidence 543 446789999999873 3334566777778999999999999876543 2233555655553 7999
Q ss_pred EeecCCCCCHHHHHHHHHHH
Q 021750 282 MTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~ 301 (308)
++||++|+|+++++++|.+.
T Consensus 145 ~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 145 PIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ECBGGGTBSHHHHHHHHHTC
T ss_pred EEECCCCCCHHHHHHHHHhh
Confidence 99999999999999999764
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=165.06 Aligned_cols=154 Identities=17% Similarity=0.216 Sum_probs=105.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+++|++..+.....++.+... ...+..++ .+.+|||||... +..++..++
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~ 72 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQ----------FTAMRDLYM 72 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCS----------STTHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHH----------HHHHHHHHh
Confidence 5899999999999999999998764333333332222 23334443 588999999642 233566666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..++ ++++|+|.+++.+.... .+.......++|+++|+||+|+.+.+. +..+..+.+.+.+. .
T Consensus 73 ~~~d---~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~-----~ 140 (167)
T 1c1y_A 73 KNGQ---GFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV----VGKEQGQNLARQWC-----N 140 (167)
T ss_dssp HHCS---EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC----SCHHHHHHHHHHTT-----S
T ss_pred ccCC---EEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccccc----CCHHHHHHHHHHcc-----C
Confidence 6654 48999999876443332 122222335899999999999976433 23444555444331 3
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+++++||++|.|+++++++|.+.+
T Consensus 141 ~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 141 CAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CcEEEecCCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998865
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=166.12 Aligned_cols=158 Identities=16% Similarity=0.186 Sum_probs=108.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.. .+..++..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 75 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE----------RFRSLRTP 75 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCG----------GGHHHHGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCch----------hhhhhHHH
Confidence 456999999999999999999998765444555556555556666665 68999999953 34445555
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
++.. ++++++|+|.+++.+.... ++..... ..++|+++|+||+|+.... +..+.++.+.+..
T Consensus 76 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----~~~~~~~~~~~~~-- 145 (177)
T 1wms_A 76 FYRG---SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-----VSTEEAQAWCRDN-- 145 (177)
T ss_dssp GGTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-----SCHHHHHHHHHHT--
T ss_pred HHhc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc-----cCHHHHHHHHHhc--
Confidence 5443 4569999999876544332 1111111 1678999999999997322 2344444444321
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
...+++++||++|+|+++++++|.+.+.+
T Consensus 146 ---~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 146 ---GDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp ---TCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ---CCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 24789999999999999999999887643
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.2e-23 Score=169.29 Aligned_cols=158 Identities=19% Similarity=0.244 Sum_probs=110.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++.++.....++.+.+.....+.+++ .+.+|||||.. .+...+..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 80 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE----------RYHSLAPM 80 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSG----------GGGGGTHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCCh----------hhhhhhHH
Confidence 346999999999999999999999865444445556555555555554 68999999953 23334555
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
++..+ +++++|+|++++.+.... .+...+. ..++|+++|+||+|+.+... +..+.++++.+..
T Consensus 81 ~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~----~~~~~~~~~~~~~------ 147 (181)
T 2efe_B 81 YYRGA---AAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARK----VTAEDAQTYAQEN------ 147 (181)
T ss_dssp HHTTC---SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----SCHHHHHHHHHHT------
T ss_pred HhccC---CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccccc----CCHHHHHHHHHHc------
Confidence 55544 458999999876554332 1222222 24789999999999976433 2344455544433
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..+++++||++|+|+++++++|.+.+..
T Consensus 148 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 148 GLFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp TCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3689999999999999999999887644
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=168.47 Aligned_cols=157 Identities=16% Similarity=0.119 Sum_probs=109.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC----CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND----SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
..++|+++|.+|||||||+++|++..+.....++.+.......+.+++ .+.+|||||... +..++.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~~~ 74 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTI----------GGKMLD 74 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCT----------TCTTHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcc----------ccchhh
Confidence 346999999999999999999998765444455555555555555543 689999999642 223455
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhcc-----CCCC-EEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLGQ-----NQIP-MTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~~-----~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
.|+..+ +++++|+|++++.+..+. .+...+.. ...| +++|+||+|+.+.+. +..+..+.+.+..+
T Consensus 75 ~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~----~~~~~~~~~~~~~~- 146 (178)
T 2hxs_A 75 KYIYGA---QGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT----IKPEKHLRFCQENG- 146 (178)
T ss_dssp HHHTTC---SEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS----SCHHHHHHHHHHHT-
T ss_pred HHHhhC---CEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccc----cCHHHHHHHHHHcC-
Confidence 666544 459999999876554332 11121211 2566 899999999976432 23455555555443
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.+++++||++|+|++++|++|.+.+.
T Consensus 147 -----~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 147 -----FSSHFVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp -----CEEEEECTTTCTTHHHHHHHHHHHHT
T ss_pred -----CcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999988764
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=170.20 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=105.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHH-H
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDK-F 197 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~-~ 197 (308)
....++|+++|.+|||||||+++|++........+..+.+.....+.+++ .+.+|||||... +.. +
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~----------~~~~~ 89 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD----------AGGWL 89 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSG----------GGHHH
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCcc----------chhhh
Confidence 34567999999999999999999986432111122223233334455555 578899999642 222 4
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHH
Q 021750 198 TKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELI 270 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 270 (308)
...|+..+ +++++|+|.++..+.... ..|+. ..++|+++|+||+|+.+.+. +..+..+.+.+.+
T Consensus 90 ~~~~~~~~---d~~ilv~d~~~~~s~~~~--~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----v~~~~~~~~a~~~ 160 (195)
T 3cbq_A 90 RDHCLQTG---DAFLIVFSVTDRRSFSKV--PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----VSLEEGRHLAGTL 160 (195)
T ss_dssp HHHHHHHC---SEEEEEEETTCHHHHHTH--HHHHHHHHHHSTTSCCCEEEEEECTTCTTTCC----SCHHHHHHHHHHT
T ss_pred HHHhhccC---CEEEEEEECCCHHHHHHH--HHHHHHHHHhcCCCCCCEEEEeechhccccCC----cCHHHHHHHHHHh
Confidence 55566554 458999999876544332 22221 14799999999999976443 2344455554433
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..+++++||++|.|++++|++|.+.+..
T Consensus 161 ------~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 161 ------SCKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp ------TCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred ------CCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 2689999999999999999999987754
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-21 Score=168.73 Aligned_cols=172 Identities=17% Similarity=0.148 Sum_probs=106.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+|+|++..+. ....+++|... ..+..++ .+.+|||||.............+. .+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~-~~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD--VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMT-TIT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE--EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHH-HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHH-HHH
Confidence 45679999999999999999999998643 45556655543 3334444 799999999854221110000011 222
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhH---HHHHHHhccC--CCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPID---LEYASWLGQN--QIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~---~~l~~~~~~~--~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
.++ ...+++++|+|+++..+... ..+...+... ++|+++|+||+|+....+ +..+..+.+.+... ..
T Consensus 104 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~-~~ 175 (228)
T 2qu8_A 104 ALA---HINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDS----LSIDNKLLIKQILD-NV 175 (228)
T ss_dssp HHH---TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--C----CCHHHHHHHHHHHH-HC
T ss_pred Hhh---ccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchh----hHHHHHHHHHHHHH-hc
Confidence 332 33456999999998766432 2333334333 899999999999986543 12222222333222 21
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
....+++++||++|+|++++|++|.+.+...
T Consensus 176 ~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 176 KNPIKFSSFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp CSCEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEecccCCCHHHHHHHHHHHHHHH
Confidence 1126899999999999999999999887654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=9.7e-22 Score=186.74 Aligned_cols=172 Identities=23% Similarity=0.335 Sum_probs=115.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCch-hhhhchHHH-H
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPR-ELRTDWDKF-T 198 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~-~~~~~~~~~-~ 198 (308)
..++|+|+|++|||||||+|+|++..+ ..+++.+|+|++. ..+.+++ .+.+|||||+....... +....+... .
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~-~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKER-ALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTT-EEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcc-cccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 457999999999999999999999764 5688899988764 4455666 78999999985422110 000111111 1
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc--C
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ--T 276 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 276 (308)
..++.. ++++++|+|++.+.+..+..+..++...++|+++|+||||+.+... ...+++.+.+...+. .
T Consensus 258 ~~~i~~---ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~ 327 (439)
T 1mky_A 258 VDSIEK---ADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHRE-------KRYDEFTKLFREKLYFID 327 (439)
T ss_dssp HHHHHH---CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGG-------GCHHHHHHHHHHHCGGGT
T ss_pred HHHHhh---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchh-------hHHHHHHHHHHHHhccCC
Confidence 233333 3558999999988888777777777778999999999999976432 112333333322221 3
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
..+++++||++|.|++++++.+.+.+..+.
T Consensus 328 ~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 328 YSPLIFTSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp TSCEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 478999999999999999999999887764
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-22 Score=168.77 Aligned_cols=160 Identities=19% Similarity=0.186 Sum_probs=107.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC--------------------------------
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-------------------------------- 170 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-------------------------------- 170 (308)
+..++|+++|.+|||||||+++|++..+.....++.+.......+.++
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 345799999999999999999999986543344444444433333332
Q ss_pred --------CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHH-HH-HHhccCCCCEE
Q 021750 171 --------DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLE-YA-SWLGQNQIPMT 240 (308)
Q Consensus 171 --------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~-l~-~~~~~~~~pvi 240 (308)
..+.+|||||... +...+..++..+ +++++|+|++++.+..+.. +. .+....+.|++
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~~---d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~pii 151 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQER----------YASIVPLYYRGA---TCAIVVFDISNSNTLDRAKTWVNQLKISSNYIII 151 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGG----------CTTTHHHHHTTC---SEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEE
T ss_pred cccCccceeEEEEEECCCcHH----------HHHHHHHHhcCC---CEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEE
Confidence 3578999999532 223455655544 4599999999875544421 11 22222459999
Q ss_pred EEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 241 LVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 241 vV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
+|+||+| ..... +..+.++++.+.. ..+++++||++|.|+++++++|.+.+.+..
T Consensus 152 lv~NK~D-~~~~~----~~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 152 LVANKID-KNKFQ----VDILEVQKYAQDN------NLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp EEEECTT-CC-CC----SCHHHHHHHHHHT------TCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEEECCC-ccccc----CCHHHHHHHHHHc------CCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999 32221 2334444444332 368999999999999999999998876654
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=173.52 Aligned_cols=158 Identities=20% Similarity=0.265 Sum_probs=110.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-------------CCEEEecCCCcccCCCchh
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-------------DSWYLVDLPGYGYAAAPRE 189 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-------------~~~~liDtpG~~~~~~~~~ 189 (308)
+..++|+|+|.+|||||||+++|++..+.....++.+.+.....+.++ ..+.+|||||..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~------- 95 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE------- 95 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH-------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH-------
Confidence 345799999999999999999999876533333333322222333332 258999999942
Q ss_pred hhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-------CCCCEEEEeecCCCCCcccCCCCCchhh
Q 021750 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-------NQIPMTLVFTKCDKRKKKKNGGKRPEEN 262 (308)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-------~~~pvivV~NK~Dl~~~~~~~~~~~~~~ 262 (308)
.+..++..++..+ +++++|+|+++..+..+. ..|+.. .++|+++|+||+|+..... +..+.
T Consensus 96 ---~~~~~~~~~~~~~---d~iilV~D~~~~~s~~~~--~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----v~~~~ 163 (217)
T 2f7s_A 96 ---RFRSLTTAFFRDA---MGFLLMFDLTSQQSFLNV--RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----VNERQ 163 (217)
T ss_dssp ---HHHHHHHHHHTTC---CEEEEEEETTCHHHHHHH--HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----SCHHH
T ss_pred ---hHHhHHHHHhcCC---CEEEEEEECcCHHHHHHH--HHHHHHHHHhcCcCCCCEEEEEECCccccccc----cCHHH
Confidence 4555666666544 459999999876554432 344432 5789999999999976433 23445
Q ss_pred HHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 263 LNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
++++.+.+ ..+++++||++|+|+++++++|.+.+.+.
T Consensus 164 ~~~~~~~~------~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 164 ARELADKY------GIPYFETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp HHHHHHHT------TCCEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC------CCcEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 55555443 37899999999999999999999887654
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=170.80 Aligned_cols=160 Identities=18% Similarity=0.246 Sum_probs=104.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCC-cceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRK-KLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
...++|+++|.+|||||||+++|++.. +.....++.+ .....+.+++ .+.+|||||... +..++..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~ 86 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSSLSFTVFDMSGQGR----------YRNLWEH 86 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSSCEEEEEEECCSTT----------TGGGGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECCEEEEEEECCCCHH----------HHHHHHH
Confidence 445799999999999999999999875 2333333333 3444555555 799999999642 2224444
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH-h
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ-G 272 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~ 272 (308)
++..+ +++++|+|++++.+..+. .+..++.. .++|+++|+||+|+.... . .+++.+.+. .
T Consensus 87 ~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~---~~~~~~~~~~~ 154 (190)
T 2h57_A 87 YYKEG---QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAV------T---SVKVSQLLCLE 154 (190)
T ss_dssp GGGGC---SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCC------C---HHHHHHHHTGG
T ss_pred HHhcC---CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCC------C---HHHHHHHhChh
Confidence 54443 569999999876444332 22233322 579999999999997532 2 233333332 1
Q ss_pred hh-cCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 273 FF-QTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 273 ~~-~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+ ....+++++||++|+|+++++++|.+.++++.
T Consensus 155 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~k 189 (190)
T 2h57_A 155 NIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTVK 189 (190)
T ss_dssp GCCSSCEEEEECBTTTTBTHHHHHHHHHHHC----
T ss_pred hccCCceEEEEccCCCCcCHHHHHHHHHHHHHHhc
Confidence 11 23468999999999999999999999887654
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.4e-23 Score=166.87 Aligned_cols=155 Identities=21% Similarity=0.245 Sum_probs=109.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+.+.....+..++ .+.+|||||... +..++..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~ 73 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE----------FDAITKA 73 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGG----------TTCCCHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHh----------HHHHHHH
Confidence 346999999999999999999999765444455555555555555554 689999999542 2223445
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
++.. ++++++|+|++++.+.... ..|+. ..+.|+++|+||+|+.+.+. +..+.++.+.+..+
T Consensus 74 ~~~~---~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~---- 140 (168)
T 1z2a_A 74 YYRG---AQACVLVFSTTDRESFEAI--SSWREKVVAEVGDIPTALVQNKIDLLDDSC----IKNEEAEGLAKRLK---- 140 (168)
T ss_dssp HHTT---CCEEEEEEETTCHHHHHTH--HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----SCHHHHHHHHHHHT----
T ss_pred HhcC---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhCCCCCEEEEEECcccCcccc----cCHHHHHHHHHHcC----
Confidence 5544 3559999999876543332 22222 15799999999999976433 23455555555443
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.+++++||++|.|+++++++|.+.+.
T Consensus 141 --~~~~~~Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 141 --LRFYRTSVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp --CEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred --CeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 68999999999999999999988764
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=169.76 Aligned_cols=156 Identities=21% Similarity=0.210 Sum_probs=110.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||... +..++..+
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~ 84 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER----------FRTLTPSY 84 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG----------GCCSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchh----------hhhhhHHH
Confidence 46999999999999999999999876545556666666666666654 589999999642 22345566
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+..+ +++++|+|++++.+.... .+...+. ..++|+++|+||+|+.... +..+....+.+..
T Consensus 85 ~~~~---d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~------ 150 (195)
T 1x3s_A 85 YRGA---QGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE-----VDRNEGLKFARKH------ 150 (195)
T ss_dssp HTTC---CEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-----SCHHHHHHHHHHT------
T ss_pred hccC---CEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccc-----cCHHHHHHHHHHc------
Confidence 5544 459999999876544332 1122222 2478999999999995422 2334444444332
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..+++++||++|.|+++++++|.+.+.+
T Consensus 151 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 151 SMLFIEASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 3689999999999999999999987754
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.5e-22 Score=162.92 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=107.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
..++|+++|.+|||||||+++|++..+. ...++.+ .....+.+++ .+.+|||||... +..++..++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~~~~~~ 72 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTYKNLKFQVWDLGGLTS----------IRPYWRCYY 72 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSS--EEEEEEEETTEEEEEEEECCCGG----------GGGGGGGGC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCc--cceEEEEECCEEEEEEECCCChh----------hhHHHHHHh
Confidence 3469999999999999999999987642 2333333 3344455555 799999999642 222344444
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--hc
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--FQ 275 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 275 (308)
. .++++++|+|++++.+.... .+..++.. .++|+++|+||+|+.+... .+++.+.+... ..
T Consensus 73 ~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~ 140 (171)
T 1upt_A 73 S---NTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT---------SSEMANSLGLPALKD 140 (171)
T ss_dssp T---TCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---------HHHHHHHHTGGGCTT
T ss_pred c---cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC---------HHHHHHHhCchhccC
Confidence 3 45669999999988665442 23333332 6899999999999976432 23333333221 11
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
...+++++||++|+|+++++++|.+.+.+
T Consensus 141 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 141 RKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp SCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 23579999999999999999999988753
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-22 Score=168.72 Aligned_cols=158 Identities=17% Similarity=0.119 Sum_probs=107.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
.++|+++|.+|||||||+++|++.++.....++.+.+. ..+..++ .+.+|||||.. ++..++..++.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~~~~ 89 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM--RKITKGNVTIKLWDIGGQP----------RFRSMWERYCR 89 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE--EEEEETTEEEEEEEECCSH----------HHHTTHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeE--EEEEeCCEEEEEEECCCCH----------hHHHHHHHHHc
Confidence 46999999999999999999998765433444444433 3344444 78999999953 34445666664
Q ss_pred hcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh--cC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF--QT 276 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 276 (308)
. ++++++|+|+++..+.... .+..++. ..++|+++|+||+|+..... .+++.+.+.... ..
T Consensus 90 ~---~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~~ 157 (188)
T 1zd9_A 90 G---VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD---------EKELIEKMNLSAIQDR 157 (188)
T ss_dssp T---CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC---------HHHHHHHTTGGGCCSS
T ss_pred c---CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCC---------HHHHHHHhChhhhccC
Confidence 4 4559999999886555442 2233333 26899999999999976421 233333332211 13
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
..+++++||++|.|+++++++|.+.+.+++
T Consensus 158 ~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 187 (188)
T 1zd9_A 158 EICCYSISCKEKDNIDITLQWLIQHSKSRR 187 (188)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHTCC---
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 467999999999999999999998776543
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=166.78 Aligned_cols=154 Identities=19% Similarity=0.252 Sum_probs=105.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||... +..+...+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~ 75 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER----------FHALGPIY 75 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------CCS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHh----------hhhhHHHH
Confidence 46999999999999999999998765444445555555455566554 588999999532 22233333
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
+. .++++++|+|++++.+.... ..|+. ..++|+++|+||+|+.+.+. +..+..+.+.+..
T Consensus 76 ~~---~~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~----- 141 (170)
T 1z08_A 76 YR---DSNGAILVYDITDEDSFQKV--KNWVKELRKMLGNEICLCIVGNKIDLEKERH----VSIQEAESYAESV----- 141 (170)
T ss_dssp ST---TCSEEEEEEETTCHHHHHHH--HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----SCHHHHHHHHHHT-----
T ss_pred hc---cCCEEEEEEECcCHHHHHHH--HHHHHHHHHhcCCCCeEEEEEECcccccccc----cCHHHHHHHHHHc-----
Confidence 33 44669999999876544332 22221 25799999999999976433 2344455554433
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++++||++|+|+++++++|.+.+.
T Consensus 142 -~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 142 -GAKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp -TCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred -CCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 378999999999999999999988764
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=7.9e-22 Score=165.35 Aligned_cols=160 Identities=13% Similarity=0.095 Sum_probs=109.5
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHH
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKF 197 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 197 (308)
++...+||+++|.+|||||||+++|++..+.....++ .......+.+++ .+.+|||||.. .+.
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~-- 81 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE--GGRFKKEIVVDGQSYLLLIRDEGGPP----------ELQ-- 81 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT--CEEEEEEEEETTEEEEEEEEECSSSC----------CHH--
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC--cceEEEEEEECCEEEEEEEEECCCCh----------hhh--
Confidence 3445679999999999999999999998754333333 222234555555 57789999963 222
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhcc----CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 198 TKDYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLGQ----NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~~----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
|+..+ +++++|+|.++..+..+. .+...+.. .+.|+++|+||+|+...... .+..+.++++.+.++
T Consensus 82 ---~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~v~~~~~~~~~~~~~- 152 (184)
T 3ihw_A 82 ---FAAWV---DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPR--VIDDSRARKLSTDLK- 152 (184)
T ss_dssp ---HHHHC---SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCC--CSCHHHHHHHHHHTT-
T ss_pred ---eecCC---CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccc--ccCHHHHHHHHHHcC-
Confidence 44544 458999999987655542 22222221 47899999999999632221 134455555555442
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWLK 307 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~~ 307 (308)
..+++++||++|+|++++|++|.+.+.+.++
T Consensus 153 ----~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 153 ----RCTYYETCATYGLNVERVFQDVAQKVVALRK 183 (184)
T ss_dssp ----TCEEEEEBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred ----CCeEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence 3689999999999999999999998877654
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-22 Score=167.16 Aligned_cols=164 Identities=17% Similarity=0.236 Sum_probs=105.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-C---CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-D---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
...++|+++|.+|||||||+++|++..+.....++.+.+.....+.++ + .+.+|||||.. .+...+
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 75 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE----------RFQSLG 75 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCCh----------Hhhhhh
Confidence 445799999999999999999999976544444555555555555554 2 58999999953 233344
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHH
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELI 270 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 270 (308)
..++. .++++++|+|++++.+.... ++..... ..++|+++|+||+|+..... .+..+....+.+..
T Consensus 76 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---~v~~~~~~~~~~~~ 149 (182)
T 1ky3_A 76 VAFYR---GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK---IVSEKSAQELAKSL 149 (182)
T ss_dssp -CCST---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC---CSCHHHHHHHHHHT
T ss_pred HHHhh---cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccc---cCCHHHHHHHHHhc
Confidence 44443 44669999999876544332 1111111 16789999999999964322 12344444444321
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWLK 307 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~~ 307 (308)
...+++++||++|+|+++++++|.+.+.+.++
T Consensus 150 -----~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 181 (182)
T 1ky3_A 150 -----GDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 181 (182)
T ss_dssp -----TSCCEEEEBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred -----CCCeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Confidence 24789999999999999999999998876554
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.1e-22 Score=169.34 Aligned_cols=159 Identities=22% Similarity=0.288 Sum_probs=110.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||... +...+.
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~ 87 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER----------FRTITT 87 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG----------GTCCCH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHH----------HHHHHH
Confidence 4457999999999999999999998765444445555555555666665 689999999642 222344
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++.. ++++++|+|++++.+.... .+...+. ..++|+++|+||+|+.... +..+..+.+.+.++
T Consensus 88 ~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~---- 155 (213)
T 3cph_A 88 AYYRG---AMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-----VTADQGEALAKELG---- 155 (213)
T ss_dssp HHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCC-----SCHHHHHHHHHHHT----
T ss_pred HHhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-----cCHHHHHHHHHHcC----
Confidence 55544 4559999999876543332 1111111 2478999999999994322 24455555555443
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
++++++||++|.|+++++++|.+.+.+.
T Consensus 156 --~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 156 --IPFIESSAKNDDNVNEIFFTLAKLIQEK 183 (213)
T ss_dssp --CCEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred --CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999887654
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-22 Score=171.38 Aligned_cols=159 Identities=19% Similarity=0.230 Sum_probs=110.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.... ..++..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~ 76 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF----------RTITSS 76 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTT----------TCCCGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHH----------HHHHHH
Confidence 357999999999999999999999865444445555555555666655 6899999996431 112333
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHH-HHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLE-YASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~-l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
++. .++++++|+|++++.+..... +...+ ...+.|+++|+||+|+.+.+. +..+....+.+..
T Consensus 77 ~~~---~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~------ 143 (206)
T 2bcg_Y 77 YYR---GSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----VEYDVAKEFADAN------ 143 (206)
T ss_dssp GGT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----SCHHHHHHHHHHT------
T ss_pred hcc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc----cCHHHHHHHHHHc------
Confidence 443 345699999999765544321 11111 125789999999999986433 2334444444332
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
..+++++||++|.|++++|++|.+.+.+.
T Consensus 144 ~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 144 KMPFLETSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 37899999999999999999999887654
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.7e-23 Score=171.69 Aligned_cols=157 Identities=17% Similarity=0.228 Sum_probs=87.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||... +..++..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~ 76 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTITTA 76 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------CCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh----------hhhhHHH
Confidence 346999999999999999999998754333333334444444555554 689999999642 2223334
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
++. .++++++|+|++++.+.... ..|+. ..+.|+++|+||+|+.+.+. +..+.++.+.+.++
T Consensus 77 ~~~---~~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----v~~~~~~~~~~~~~--- 144 (183)
T 2fu5_C 77 YYR---GAMGIMLVYDITNEKSFDNI--RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----VSKERGEKLALDYG--- 144 (183)
T ss_dssp TTT---TCSEEEEEEETTCHHHHHHH--HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----SCHHHHHHHHHHHT---
T ss_pred HHh---cCCEEEEEEECcCHHHHHHH--HHHHHHHHHhcCCCCCEEEEEECccCCccCc----CCHHHHHHHHHHcC---
Confidence 443 34569999999976544332 22322 24789999999999976433 24455666655543
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.+++++||++|+|++++|++|.+.+...
T Consensus 145 ---~~~~~~Sa~~~~~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 145 ---IKFMETSAKANINVENAFFTLARDIKAK 172 (183)
T ss_dssp ---CEEEECCC---CCHHHHHHHHHHHHHHH
T ss_pred ---CeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999877654
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-22 Score=162.00 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=104.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHh
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 204 (308)
+||+++|.+|||||||+++|++..+.. ..++.+ .....+..++ .+.+|||||.. .+..++..++..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~~~ 67 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKNISFTVWDVGGQD----------KIRPLWRHYFQN 67 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSSCEEEEEECCCCG----------GGHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECCEEEEEEEcCCCh----------hhHHHHHHHhcc
Confidence 489999999999999999999876432 223333 3333444444 79999999963 455566666654
Q ss_pred cCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh--cCC
Q 021750 205 RSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF--QTA 277 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 277 (308)
+ +++++|+|++++.+.... .+..++. ..+.|+++|+||+|+.+... .+++.+.+.... ...
T Consensus 68 ~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~ 135 (164)
T 1r8s_A 68 T---QGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRHRN 135 (164)
T ss_dssp C---SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---------HHHHHHHTTGGGCSSCC
T ss_pred C---CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC---------HHHHHHHhCcccccCcc
Confidence 4 558999999987655432 2222222 24799999999999975421 233333332211 123
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.+++++||++|.|+++++++|.+.+.+
T Consensus 136 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 136 WYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred EEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 579999999999999999999987654
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-22 Score=166.34 Aligned_cols=156 Identities=15% Similarity=0.154 Sum_probs=107.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.. .+...+..++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~~~~ 84 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSLIPSYI 84 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGSHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcH----------HHHHHHHHHh
Confidence 6999999999999999999998765433344444444445555555 68999999953 2333455666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HHHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EYASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
..+ +++++|+|++++.+.... .+...+ ...++|+++|+||+|+.+.+. +..+....+.+.. ..
T Consensus 85 ~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~------~~ 151 (179)
T 2y8e_A 85 RDS---TVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----VSTEEGERKAKEL------NV 151 (179)
T ss_dssp HTC---SEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCC----SCHHHHHHHHHHH------TC
T ss_pred cCC---CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCc----CCHHHHHHHHHHc------CC
Confidence 554 458999999875443322 111111 125799999999999976443 2334444444443 27
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+++++||++|+|+++++++|.+.+..
T Consensus 152 ~~~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 152 MFIETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 89999999999999999999886543
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=165.32 Aligned_cols=159 Identities=16% Similarity=0.150 Sum_probs=111.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+++|++.++.....++.+... ...+.+++ .+.+|||||... ..++.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~~~ 93 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-----------TIQRE 93 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-----------CHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-----------ccchh
Confidence 3457999999999999999999999865433344444332 23344444 588999999753 12555
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
.++..++ ++++|+|++++.+..+. .+.......++|+++|+||+|+.+.+. +..+....+.+.++
T Consensus 94 ~~~~~~d---~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----v~~~~~~~~~~~~~--- 163 (196)
T 2atv_A 94 GHMRWGE---GFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQ----VSTEEGEKLATELA--- 163 (196)
T ss_dssp HHHHHCS---EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC----SCHHHHHHHHHHHT---
T ss_pred hhhccCC---EEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccc----cCHHHHHHHHHHhC---
Confidence 6666654 48999999876544332 112222236899999999999976433 24455555555442
Q ss_pred cCCCCEEEeecCCCC-CHHHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQ-GRDEILLHMAQLRNYWL 306 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~-gi~el~~~i~~~~~~~~ 306 (308)
.+++++||++|. |++++|++|.+.+.+.+
T Consensus 164 ---~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 164 ---CAFYECSACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp ---SEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred ---CeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence 789999999999 99999999998876543
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=163.79 Aligned_cols=157 Identities=24% Similarity=0.296 Sum_probs=103.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+++|++..+ .....+++|.. ...+.+++ .+.+|||||........ ....+...|+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----~~~~~~~~~~ 77 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV--YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS----IDEIIARDYI 77 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS--SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSS----HHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe--eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcc----hhHHHHHHHH
Confidence 5899999999999999999998753 23445555443 33455544 78999999976422111 1123555666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
... .++++++|+|+++... ...+...+...++|+++|+||+|+...... . ...+.+.+.++ .++++
T Consensus 78 ~~~-~~~~~i~v~D~~~~~~--~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----~-~~~~~~~~~~~------~~~~~ 143 (165)
T 2wji_A 78 INE-KPDLVVNIVDATALER--NLYLTLQLMEMGANLLLALNKMDLAKSLGI----E-IDVDKLEKILG------VKVVP 143 (165)
T ss_dssp HHH-CCSEEEEEEETTCHHH--HHHHHHHHHHTTCCEEEEEECHHHHHHTTC----C-CCHHHHHHHHT------SCEEE
T ss_pred hcC-CCCEEEEEecCCchhH--hHHHHHHHHhcCCCEEEEEEchHhccccCh----h-hHHHHHHHHhC------CCEEE
Confidence 532 3467999999986321 122333334468999999999998754321 1 23455555553 68999
Q ss_pred eecCCCCCHHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~ 302 (308)
+||++|+|++++|++|.+.+
T Consensus 144 ~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 144 LSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp CBGGGTBSHHHHHHHHHHHT
T ss_pred EEcCCCCCHHHHHHHHHHHh
Confidence 99999999999999998765
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-22 Score=163.23 Aligned_cols=156 Identities=17% Similarity=0.199 Sum_probs=105.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+|+|++..+.....++.+.+.. ..+..++ .+.+|||||.. .+..++..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~~~ 71 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH----------QFPAMQRLS 71 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCS----------SCHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCch----------hhHHHHHHh
Confidence 368999999999999999999987643333333333222 2233333 58899999964 344466666
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
+..++ ++++|+|++++.+.... .+...+.. .++|+++|+||+|+.+.++ +..+..+.+.+..
T Consensus 72 ~~~~~---~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~----v~~~~~~~~~~~~----- 139 (172)
T 2erx_A 72 ISKGH---AFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----VQSSEAEALARTW----- 139 (172)
T ss_dssp HHHCS---EEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----SCHHHHHHHHHHH-----
T ss_pred cccCC---EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccc----cCHHHHHHHHHHh-----
Confidence 66644 48999999875443321 12222221 4799999999999976543 2334444444443
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..+++++||++|.|+++++++|.+.+..
T Consensus 140 -~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 140 -KCAFMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp -TCEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred -CCeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 2689999999999999999999887643
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=9.5e-22 Score=164.67 Aligned_cols=157 Identities=17% Similarity=0.169 Sum_probs=107.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
...++|+++|.+|||||||+++|+++++. .+.++.+.+. ..+.+++ .+.+|||||... +..++..+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~ 80 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVINNTRFLMWDIGGQES----------LRSSWNTY 80 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEETTEEEEEEECCC--------------CGGGHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEECCEEEEEEECCCCHh----------HHHHHHHH
Confidence 34579999999999999999999987664 4555555432 3344455 799999999642 22345555
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--h
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--F 274 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~ 274 (308)
+.. ++++++|+|++++.+.... .+..+.. ..++|+++|+||+|+.+.. . .+++.+.+... .
T Consensus 81 ~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~---~~~i~~~~~~~~~~ 148 (187)
T 1zj6_A 81 YTN---TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM------T---VAEISQFLKLTSIK 148 (187)
T ss_dssp HTT---CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC------C---HHHHHHHHTGGGCC
T ss_pred hcC---CCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC------C---HHHHHHHhChhhhc
Confidence 544 4569999999988665543 2223332 2689999999999997532 1 22333333221 1
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
....+++++||++|+|+++++++|.+.+..
T Consensus 149 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 149 DHQWHIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp SSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred CCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 234689999999999999999999987643
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=158.25 Aligned_cols=153 Identities=18% Similarity=0.262 Sum_probs=105.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+++|++..+.....++.+.. ....+..++ .+.+|||||.. ++..++..++
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~~~ 72 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQE----------EYSAMRDQYM 72 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCS----------SCCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCch----------hhhHHHHHhh
Confidence 589999999999999999999876433333333322 223344444 47899999954 2334666666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-H----HHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-E----YASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~----l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..++ ++++|+|+++..+..+. . +.......++|+++|+||+|+.... ...+..+++.+..+
T Consensus 73 ~~~~---~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~-----~~~~~~~~~~~~~~------ 138 (166)
T 2ce2_X 73 RTGE---GFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAART-----VESRQAQDLARSYG------ 138 (166)
T ss_dssp HHCS---EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----SCHHHHHHHHHHHT------
T ss_pred ccCC---EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcc-----cCHHHHHHHHHHcC------
Confidence 6554 48999999875443332 1 1112222479999999999998632 24455566655543
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.+++++||++|.|+++++++|.+.+.
T Consensus 139 ~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 139 IPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp CCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999998764
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=161.73 Aligned_cols=155 Identities=12% Similarity=0.075 Sum_probs=107.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||+++|++..+.. ..++.+... ...+.+++ .+.+|||||... ..|
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~---------------~~~ 69 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD---------------AKF 69 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC---------------HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch---------------hHH
Confidence 4699999999999999999999987643 445555433 34445554 578999999532 234
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHH-HHHHhcc------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLE-YASWLGQ------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~-l~~~~~~------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
+..+ +++++|+|.+++.+..+.. +..++.. .++|+++|+||+|+...... .+..+.++.+.+.+.
T Consensus 70 ~~~~---d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~--~v~~~~~~~~~~~~~--- 141 (178)
T 2iwr_A 70 SGWA---DAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPR--VVGDARARALXADMK--- 141 (178)
T ss_dssp HHHC---SEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCC--CSCHHHHHHHHHHHS---
T ss_pred HHhC---CEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccC--cCCHHHHHHHHHhhc---
Confidence 5544 4589999999876555432 2223321 47899999999999532211 134455555554442
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
..+++++||++|+|++++|++|.+.+....
T Consensus 142 --~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 142 --RCSYYETXATYGLNVDRVFQEVAQKVVTLR 171 (178)
T ss_dssp --SEEEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred --CCeEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence 368999999999999999999998776544
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-22 Score=169.95 Aligned_cols=157 Identities=20% Similarity=0.242 Sum_probs=103.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.. .+..++..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~~~ 93 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE----------RFRSVTRS 93 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHH----------HHSCCCHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcH----------hHHHHHHH
Confidence 346999999999999999999998765444444445555555555655 68999999953 22223445
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHh------ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWL------GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~------~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
++.. ++++++|+|++++.+.... ..|+ ...++|+++|+||+|+..... +..+....+.+..
T Consensus 94 ~~~~---~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----v~~~~~~~~~~~~---- 160 (200)
T 2o52_A 94 YYRG---AAGALLVYDITSRETYNSL--AAWLTDARTLASPNIVVILCGNKKDLDPERE----VTFLEASRFAQEN---- 160 (200)
T ss_dssp HHTT---CSEEEEEEETTCHHHHHTH--HHHHHHHHHHTCTTCEEEEEEECGGGGGGCC----SCHHHHHHHHHHT----
T ss_pred Hhcc---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhcCCCCcEEEEEECCCcccccc----cCHHHHHHHHHHc----
Confidence 5554 3559999999876544332 2222 125799999999999975432 2334444444332
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
..+++++||++|.|++++|++|.+.+...
T Consensus 161 --~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 189 (200)
T 2o52_A 161 --ELMFLETSALTGENVEEAFLKCARTILNK 189 (200)
T ss_dssp --TCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred --CCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 37899999999999999999999877554
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.3e-23 Score=173.34 Aligned_cols=160 Identities=16% Similarity=0.128 Sum_probs=105.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
....++|+++|.+|||||||+++|++..+.....++.+... ...+..++ .+.+|||||..... .++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~ 89 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYS----------ILP 89 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTC----------CCC
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchH----------HHH
Confidence 34567999999999999999999999865433333333222 22233322 57899999964321 122
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
..++.. ++++++|+|+++..+.... .+...+. ..++|+++|+||+|+..... +..+..+.+.+.++
T Consensus 90 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----v~~~~~~~~~~~~~-- 160 (201)
T 3oes_A 90 YSFIIG---VHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPERE----VQAVEGKKLAESWG-- 160 (201)
T ss_dssp GGGTTT---CCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCC----SCHHHHHHHHHHHT--
T ss_pred HHHHhc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccc----cCHHHHHHHHHHhC--
Confidence 333333 4569999999976544332 1111121 24789999999999986543 34455556655553
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.+++++||++|.|++++|++|.+.+.+.
T Consensus 161 ----~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 161 ----ATFMESSARENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp ----CEEEECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred ----CeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 6899999999999999999999887653
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=163.52 Aligned_cols=157 Identities=18% Similarity=0.260 Sum_probs=102.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++..+......+.+... ...+..++ .+.+|||||.. .+..++..+
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~~ 89 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE----------EYSAMRDQY 89 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChH----------HHHHHHHHh
Confidence 36999999999999999999998764332233322222 23444444 48899999953 233355555
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+.. ++++++|+|.++..+..+. .+..+....++|+++|+||+|+.... +..+.++++.+.++
T Consensus 90 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~~----- 156 (190)
T 3con_A 90 MRT---GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRT-----VDTKQAHELAKSYG----- 156 (190)
T ss_dssp CTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----SCHHHHHHHHHHHT-----
T ss_pred hCc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCccc-----CCHHHHHHHHHHcC-----
Confidence 544 4458999999876544332 11112222579999999999997632 24455666655543
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
++++++||++|.|+++++++|.+.+.+.+
T Consensus 157 -~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 185 (190)
T 3con_A 157 -IPFIETSAKTRQGVEDAFYTLVREIRQYR 185 (190)
T ss_dssp -CCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred -CeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999887654
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-22 Score=165.59 Aligned_cols=155 Identities=16% Similarity=0.166 Sum_probs=106.0
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
....++|+++|.+|||||||+++|++.++ ..+.++.+.+. ..+.+++ .+.+|||||... +..++..
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 84 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINNTRFLMWDIGGQES----------LRSSWNT 84 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETTEEEEEEEESSSGG----------GTCGGGG
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECCEEEEEEECCCCHh----------HHHHHHH
Confidence 34457999999999999999999999876 55666666543 3344455 799999999642 2223444
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF-- 273 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-- 273 (308)
++. .++++++|+|+++..+.... .+..++. ..++|+++|+||+|+.... . .+++.+.+...
T Consensus 85 ~~~---~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~---~~~i~~~~~~~~~ 152 (181)
T 2h17_A 85 YYT---NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM------T---VAEISQFLKLTSI 152 (181)
T ss_dssp GGT---TCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------C---HHHHHHHTTGGGC
T ss_pred Hhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCC------C---HHHHHHHhCcccc
Confidence 444 34569999999988666543 2233333 2689999999999997632 1 22333333211
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
....++++++||++|+|+++++++|.+.
T Consensus 153 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 153 KDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp CSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred cCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 1123589999999999999999998753
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=164.14 Aligned_cols=157 Identities=17% Similarity=0.127 Sum_probs=106.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
...++|+++|.+|||||||+++|++.+ .....++.+. ....+.+++ .+.+|||||.. ++...+..+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~--~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~~~ 82 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGF--NIKTLEHRGFKLNIWDVGGQK----------SLRSYWRNY 82 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSE--EEEEEEETTEEEEEEEECCSH----------HHHTTGGGG
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCcc--ceEEEEECCEEEEEEECCCCH----------hHHHHHHHH
Confidence 456799999999999999999999876 3344444443 334445555 79999999963 222233333
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--h
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--F 274 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~ 274 (308)
+ ..++++++|+|++++.+..+. .+...+. ..++|+++|+||+|+.+... .+++.+.+... .
T Consensus 83 ~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---------~~~~~~~~~~~~~~ 150 (186)
T 1ksh_A 83 F---ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS---------CNAIQEALELDSIR 150 (186)
T ss_dssp C---TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---------HHHHHHHTTGGGCC
T ss_pred h---cCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC---------HHHHHHHhChhhcc
Confidence 3 345669999999987665442 2222322 25799999999999976432 23333333211 1
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
....+++++||++|+|+++++++|.+.+.+
T Consensus 151 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 151 SHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp SSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 234689999999999999999999987753
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=184.80 Aligned_cols=162 Identities=23% Similarity=0.259 Sum_probs=107.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+|+|.||||||||+|+|++.+. +.+.+.||+|++. ..+.+++ .+.+|||||+..... ..+...+......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~-~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ-DIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGG-GCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-ceecCCCCCccceeeEEEEECCeEEEEEECCCcccccc-chHHHHHHHHHHHHH
Confidence 6899999999999999999999753 5678899998763 4455555 799999999864221 111223444455555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
.. +|++++|+|++.+.+..+..+..|+...++|+++|+||+|+.+.. .... ..+.. . ++ ..++++
T Consensus 80 ~~---ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~-------~~~~--~~~~~-~-lg-~~~~~~ 144 (439)
T 1mky_A 80 RE---ADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREF-------EREV--KPELY-S-LG-FGEPIP 144 (439)
T ss_dssp TT---CSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHH-------HHHT--HHHHG-G-GS-SCSCEE
T ss_pred Hh---CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc-------HHHH--HHHHH-h-cC-CCCEEE
Confidence 44 456999999999888888788888877789999999999975310 1111 01111 1 11 136899
Q ss_pred eecCCCCCHHHHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+||++|.|+++++++|.+.+.+
T Consensus 145 iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 145 VSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EeccCCCCHHHHHHHHHHhccc
Confidence 9999999999999999887754
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-22 Score=168.27 Aligned_cols=160 Identities=17% Similarity=0.155 Sum_probs=108.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+++|++..+.....++.+.+.. ..+..++ .+.+|||||... +..++.
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 89 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEE----------YDRLRP 89 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGG----------GTTTGG
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHH----------HHHHhH
Confidence 34469999999999999999999998653333333333222 2333444 468999999532 222333
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc--cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG--QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~--~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++. .++++++|+|++++.+..+. .+...+. ..++|+++|+||+|+.+.... .+..+.++++.+.++
T Consensus 90 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~---- 160 (194)
T 3reg_A 90 LSYA---DSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSD--DVTKQEGDDLCQKLG---- 160 (194)
T ss_dssp GGCT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTT--CCCHHHHHHHHHHHT----
T ss_pred hhcc---CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCC--cccHHHHHHHHHhcC----
Confidence 4443 34569999999987555442 2222222 247999999999999854221 134556666666654
Q ss_pred CCCC-EEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 276 TAPP-WIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 276 ~~~~-~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.+ ++++||++|+|++++|++|.+.+..
T Consensus 161 --~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 161 --CVAYIEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp --CSCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred --CCEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence 45 9999999999999999999987754
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-22 Score=174.52 Aligned_cols=160 Identities=16% Similarity=0.204 Sum_probs=107.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC----CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND----SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
...+||+++|.+|||||||+|+|++..+......+.+.+.....+...+ .+.+|||||..... .+.
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~ 78 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKA----------VLK 78 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTS----------CCC
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhc----------hHH
Confidence 3457999999999999999999998776556667777665544444332 48899999964311 133
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHH-HH---HHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDL-EY---ASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~-~l---~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
..++.. ++++++|+|++++.+..+. .+ .......++|+++|+||+|+.+... +..+....+.+.
T Consensus 79 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~----- 146 (218)
T 4djt_A 79 DVYYIG---ASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQK----ISKKLVMEVLKG----- 146 (218)
T ss_dssp HHHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC--------CCHHHHHHHTTT-----
T ss_pred HHHhhc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc----cCHHHHHHHHHH-----
Confidence 344444 4559999999987554443 11 1111234689999999999976432 122222222221
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
...+++++||++|.|+++++++|.+.+..+
T Consensus 147 -~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 147 -KNYEYFEISAKTAHNFGLPFLHLARIFTGR 176 (218)
T ss_dssp -CCCEEEEEBTTTTBTTTHHHHHHHHHHHCC
T ss_pred -cCCcEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 247899999999999999999999987654
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=164.59 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=107.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+++|++..+.....++.+.+.. ..+..++ .+.+|||||.. .+..++.
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~ 74 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSH----------QFPAMQR 74 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGG----------SCHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChH----------HhHHHHH
Confidence 45579999999999999999999987653333333333322 2233333 68899999953 3445666
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
.++..++ ++++|+|.+++.+.... .+..++. ..++|+++|+||+|+.... +..+....+.+.++
T Consensus 75 ~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~-- 144 (199)
T 2gf0_A 75 LSISKGH---AFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-----VDTREAQAVAQEWK-- 144 (199)
T ss_dssp HHHHHCS---EEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-----SCHHHHHHHHHHHT--
T ss_pred HhhccCC---EEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc-----cCHHHHHHHHHHhC--
Confidence 7766654 48999999875443322 1222221 1478999999999997532 23444555544443
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.+++++||++|.|+++++++|.+.+.+
T Consensus 145 ----~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 145 ----CAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp ----CEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred ----CeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 689999999999999999999987643
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-22 Score=176.26 Aligned_cols=158 Identities=23% Similarity=0.317 Sum_probs=113.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC--CCEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN--DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.++|+++|.+|||||||+|+|++.. ..+...||+|.......++ ..+.+|||||........ ....+.+.|+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~--~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~----~~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN--QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYS----PEAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC--CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSS----HHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCC----hHHHHHHHHH
Confidence 4689999999999999999999975 3467778887754433333 389999999975422111 1123566676
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
.. ..+|++++|+|+++.. ....+..++.+.++|+++|+||+|+..... .....+.+.+.++ +++++
T Consensus 77 ~~-~~~d~vi~V~D~t~~e--~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~l~~~lg------~~vi~ 142 (272)
T 3b1v_A 77 LS-QRADSILNVVDATNLE--RNLYLTTQLIETGIPVTIALNMIDVLDGQG-----KKINVDKLSYHLG------VPVVA 142 (272)
T ss_dssp HT-TCCSEEEEEEEGGGHH--HHHHHHHHHHHTCSCEEEEEECHHHHHHTT-----CCCCHHHHHHHHT------SCEEE
T ss_pred hc-CCCCEEEEEecCCchH--hHHHHHHHHHhcCCCEEEEEEChhhCCcCC-----cHHHHHHHHHHcC------CCEEE
Confidence 54 3467799999998632 222334444557899999999999875432 1234566666654 78999
Q ss_pred eecCCCCCHHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~ 302 (308)
+||++|+|+++++++|.+.+
T Consensus 143 ~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 143 TSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp CBTTTTBSHHHHHHHHHHSC
T ss_pred EEccCCCCHHHHHHHHHHHH
Confidence 99999999999999998754
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-22 Score=168.68 Aligned_cols=152 Identities=22% Similarity=0.288 Sum_probs=99.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
..+|+++|.+|||||||+++|++.++ ..+.++.+.+. ..+.+++ .+.+|||||... ++.++..|+.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~t~~~~~--~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~ 91 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTS--EELTIAGMTFTTFDLGGHIQ----------ARRVWKNYLP 91 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETTEEEEEEEECC--------------CCGGGGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC-CccCCCCCcee--EEEEECCEEEEEEECCCcHh----------hHHHHHHHHh
Confidence 45999999999999999999998764 34445555442 3455555 789999999642 2224445555
Q ss_pred hcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh----
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF---- 274 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---- 274 (308)
. ++++++|+|++++.+..+. .+..++. ..++|+++|+||+|+.... ..+.+. +.++...
T Consensus 92 ~---~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~~~~~~---~~~~~~~~~~~ 159 (198)
T 1f6b_A 92 A---INGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI------SEERLR---EMFGLYGQTTG 159 (198)
T ss_dssp G---CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC------CHHHHH---HHHTCTTTCCC
T ss_pred c---CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccC------CHHHHH---HHhCccccccc
Confidence 4 4559999999987655432 2222222 2589999999999997521 333333 3332110
Q ss_pred ----------cCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 275 ----------QTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 275 ----------~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
....++++|||++|+|++++|++|.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 160 KGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp SSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 123679999999999999999999764
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.7e-22 Score=165.67 Aligned_cols=156 Identities=12% Similarity=0.109 Sum_probs=105.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...+||+++|.+|||||||+++|++..+...+.++.+... ...+.+++ .+.+|||||..... .+ .
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~-~ 86 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPR----------NC-E 86 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CC----------CT-H
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcch----------hH-H
Confidence 3446999999999999999999999865444444444333 22334444 57899999964211 12 3
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHH-HHHHhcc------CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLE-YASWLGQ------NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~-l~~~~~~------~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
.|+..+ +++++|+|.++..+..... +...+.. .++|+++|+||+|+.+.+. +..+..+++.+.++
T Consensus 87 ~~~~~~---~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----v~~~~~~~~~~~~~- 158 (187)
T 3c5c_A 87 RYLNWA---HAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ----VTKAEGVALAGRFG- 158 (187)
T ss_dssp HHHTTC---SEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS----SCHHHHHHHHHHHT-
T ss_pred HHHhhC---CEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc----cCHHHHHHHHHHcC-
Confidence 455443 5589999999765544321 1111111 5899999999999976443 34455666665553
Q ss_pred hhcCCCCEEEeec-CCCCCHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSS-VTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 273 ~~~~~~~~~~vSA-~~g~gi~el~~~i~~~~~ 303 (308)
++++++|| ++|+|++++|++|.+.+.
T Consensus 159 -----~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 159 -----CLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp -----CEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred -----CcEEEEeecCccccHHHHHHHHHHHHh
Confidence 68999999 899999999999988764
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=167.70 Aligned_cols=159 Identities=15% Similarity=0.156 Sum_probs=103.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceecc--CCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTS--KTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKF 197 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~--~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 197 (308)
...+||+|+|.+|||||||+|+|++.+. .+.. +..|.+.....+.+++ .+.+|||+|... .+..+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~-~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~---------~~~~l 104 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHD-SMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG---------ENEWL 104 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCC-TTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH---------HHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC-CCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc---------hhhhH
Confidence 4457999999999999999999997532 1222 2234443344555555 467899998431 11122
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCCChhHHH-HHHHhc----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 198 TKDYFLNRSTLVSVFLLIDASIPAKPIDLE-YASWLG----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~viD~~~~~~~~~~~-l~~~~~----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
...|+ ...+++++|+|.++..++.... +...+. ..++|+++|+||+|+.+.+. +..+..+.+...+
T Consensus 105 ~~~~~---~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~----v~~~e~~~~a~~~-- 175 (211)
T 2g3y_A 105 HDHCM---QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCRE----VSVSEGRACAVVF-- 175 (211)
T ss_dssp HHCCC---CCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC----SCHHHHHHHHHHH--
T ss_pred HHHHH---hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCce----EeHHHHHHHHHHc--
Confidence 22222 2345689999998765554431 222222 24799999999999975433 2334444444333
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.++++++||++|+||+++|++|.+.+..
T Consensus 176 ----~~~~~e~SAk~g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 176 ----DCKFIETSAAVQHNVKELFEGIVRQVRL 203 (211)
T ss_dssp ----TCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ----CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2689999999999999999999988754
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=176.52 Aligned_cols=159 Identities=26% Similarity=0.244 Sum_probs=112.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.+|+++|.||||||||+|+|++.+. ..++..+++|+.. ..+..++ ++.+|||||+..... .+...+......+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~-~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~--~l~~~~~~~~~~~- 83 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKV-APISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD--ALGEFMDQEVYEA- 83 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCC-SCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS--HHHHHHHHHHHHH-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCce-eeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh--HHHHHHHHHHHHH-
Confidence 3799999999999999999999764 5567777777642 2233334 799999999875321 2222233333343
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccC--CCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQN--QIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW 280 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~--~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (308)
...+|++++|+|++++.+..+..+...+... ++|+++|+||+|+.... ..+.+ .+... ....++
T Consensus 84 --l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~--------~~~~~---~~~~~-~~~~~~ 149 (301)
T 1wf3_A 84 --LADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYP--------EEAMK---AYHEL-LPEAEP 149 (301)
T ss_dssp --TSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSH--------HHHHH---HHHHT-STTSEE
T ss_pred --HhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCch--------HHHHH---HHHHh-cCcCcE
Confidence 3456779999999988777766666666655 89999999999997532 10222 22222 223579
Q ss_pred EEeecCCCCCHHHHHHHHHHHH
Q 021750 281 IMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 281 ~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+++||++|.|+++++++|.+.+
T Consensus 150 ~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 150 RMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp EECCTTCHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCCHHHHHHHHHHhc
Confidence 9999999999999999997643
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.8e-21 Score=169.48 Aligned_cols=159 Identities=28% Similarity=0.351 Sum_probs=114.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+|+|++..+ .+...||+|.... .+..++ .+.+|||||........ ....+.+.|
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~--~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~----~~e~v~~~~ 78 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQ--YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSS----IDEKIARDY 78 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCE--EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSS----HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC--cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCC----HHHHHHHHH
Confidence 36899999999999999999999763 3566778877643 344444 79999999975422211 011245566
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
+.. ..++++++|+|+++..+ ...+...+.+.++|+++|+||+|+..... .....+.+.+.++ ++++
T Consensus 79 ~~~-~~~d~ii~V~D~t~~~~--~~~~~~~l~~~~~pvilv~NK~Dl~~~~~-----i~~~~~~l~~~lg------~~vi 144 (258)
T 3a1s_A 79 LLK-GDADLVILVADSVNPEQ--SLYLLLEILEMEKKVILAMTAIDEAKKTG-----MKIDRYELQKHLG------IPVV 144 (258)
T ss_dssp HHH-SCCSEEEEEEETTSCHH--HHHHHHHHHTTTCCEEEEEECHHHHHHTT-----CCBCHHHHHHHHC------SCEE
T ss_pred Hhh-cCCCEEEEEeCCCchhh--HHHHHHHHHhcCCCEEEEEECcCCCCccc-----hHHHHHHHHHHcC------CCEE
Confidence 544 44578999999987532 23344455567899999999999875443 1223566666654 7999
Q ss_pred EeecCCCCCHHHHHHHHHHHHH
Q 021750 282 MTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++||++|.|+++++++|.+.+.
T Consensus 145 ~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 145 FTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEeeCCcCHHHHHHHHHHHhh
Confidence 9999999999999999988764
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-22 Score=172.00 Aligned_cols=158 Identities=20% Similarity=0.247 Sum_probs=104.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
+..++|+|+|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||... +..++.
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 80 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER----------YRAITS 80 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTT----------TTCCCG
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccc----------hhhhHH
Confidence 3457999999999999999999999876444455556656555666665 689999999642 112333
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++. .++++++|+|++++.+..+. .+...+. ..++|+++|+||+|+..... +..+....+.+..
T Consensus 81 ~~~~---~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----v~~~~~~~~~~~~----- 148 (223)
T 3cpj_B 81 AYYR---GAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRA----VPTEESKTFAQEN----- 148 (223)
T ss_dssp GGTT---TCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCC----SCHHHHHHHHHHT-----
T ss_pred HHhc---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc----cCHHHHHHHHHHc-----
Confidence 3433 34569999999876554442 1111111 24789999999999976433 2334444444332
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+++++||++|+|++++|++|.+.+.
T Consensus 149 -~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 149 -QLLFTETSALNSENVDKAFEELINTIY 175 (223)
T ss_dssp -TCEEEECCCC-CCCHHHHHHHHHHHHT
T ss_pred -CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999988764
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.6e-22 Score=167.53 Aligned_cols=158 Identities=18% Similarity=0.214 Sum_probs=106.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.... ..++..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~ 76 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF----------QSLGVA 76 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGG----------SCSCCG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH----------HHhHHH
Confidence 457999999999999999999999865444444555555555555554 5899999996421 112223
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
++. .++++++|+|++++.+.... ++..... ..++|+++|+||+|+.... +..+....+.+..
T Consensus 77 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~-- 146 (207)
T 1vg8_A 77 FYR---GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-----VATKRAQAWCYSK-- 146 (207)
T ss_dssp GGT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-----SCHHHHHHHHHHT--
T ss_pred HHh---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-----cCHHHHHHHHHhc--
Confidence 333 34569999999876544332 1111111 1478999999999997422 2334444443321
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
...+++++||++|.|+++++++|.+.+..
T Consensus 147 ---~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 147 ---NNIPYFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp ---TSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ---CCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 24789999999999999999999987754
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-22 Score=166.02 Aligned_cols=161 Identities=18% Similarity=0.129 Sum_probs=106.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+++|++..+.....++.+... ...+.+++ .+.+|||||.... ..++.
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~----------~~~~~ 84 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDY----------DRLRP 84 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSS----------TTTGG
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcch----------hHHHH
Confidence 3457999999999999999999998765333333333332 23344444 5789999996431 12333
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc--CCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHH
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ--NQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQ 267 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~--~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~ 267 (308)
.++. .++++++|+|++++.+.... .+...+.. .++|+++|+||+|+..... ....+..++...+.
T Consensus 85 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (194)
T 2atx_A 85 LSYP---MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA 161 (194)
T ss_dssp GGCT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH
T ss_pred HhcC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHH
Confidence 3433 34569999999876554433 12222222 3899999999999976421 00113445555555
Q ss_pred HHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 268 ELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 268 ~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+.++ ..+++++||++|+|++++|++|.+.+
T Consensus 162 ~~~~-----~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 162 KEIG-----ACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHT-----CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcC-----CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 5543 24899999999999999999998765
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-22 Score=171.85 Aligned_cols=162 Identities=17% Similarity=0.124 Sum_probs=108.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...+||+++|.+|||||||+++|++..+.....++.+.+.. ..+.+++ .+.+|||||.. .+..++.
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 93 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSP----------YYDNVRP 93 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSG----------GGTTTGG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCH----------hHHHHHH
Confidence 44579999999999999999999998654333444433332 2233333 58899999964 2223444
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhH-H-HHHHHhc--cCCCCEEEEeecCCCCCcc--------cCCCCCchhhHHHHH
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPID-L-EYASWLG--QNQIPMTLVFTKCDKRKKK--------KNGGKRPEENLNDFQ 267 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~-~-~l~~~~~--~~~~pvivV~NK~Dl~~~~--------~~~~~~~~~~~~~~~ 267 (308)
.|+.. ++++++|+|+++..+..+ . .+...+. ..+.|+++|+||+|+.+.. .....+..+..+.+.
T Consensus 94 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 170 (214)
T 3q3j_B 94 LCYSD---SDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA 170 (214)
T ss_dssp GGCTT---CSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHcCC---CeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHH
Confidence 44444 456999999998765554 1 2222222 2479999999999997531 001123556666666
Q ss_pred HHHHhhhcCCC-CEEEeecCCCCC-HHHHHHHHHHHHHH
Q 021750 268 ELIQGFFQTAP-PWIMTSSVTNQG-RDEILLHMAQLRNY 304 (308)
Q Consensus 268 ~~~~~~~~~~~-~~~~vSA~~g~g-i~el~~~i~~~~~~ 304 (308)
+.++ + ++++|||++|.| ++++|++|.+.+..
T Consensus 171 ~~~~------~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 171 KQLG------AEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp HHHT------CSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred HHcC------CCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 6654 5 899999999998 99999999987754
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.4e-22 Score=176.24 Aligned_cols=162 Identities=21% Similarity=0.240 Sum_probs=114.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+|+|++.. ..+...+|+|... ..+..++ .+.+|||||+...............+.+.|
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~--~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC--EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 4689999999999999999999986 4567788877654 3444433 799999999865331111011112244555
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
+. ...+|++++|+|+++. .....+..++.+.++|+++|+||+|+.+... .....+.+.+.++ ++++
T Consensus 81 ~~-~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~-----~~~~~~~l~~~lg------~~~i 146 (274)
T 3i8s_A 81 IL-SGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQN-----IRIEIDALSARLG------CPVI 146 (274)
T ss_dssp HH-HTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHHHHHTT-----EEECHHHHHHHHT------SCEE
T ss_pred Hh-hcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccchhhhh-----HHHHHHHHHHhcC------CCEE
Confidence 43 3455779999999873 2333455566667899999999999875432 2334566666554 7999
Q ss_pred EeecCCCCCHHHHHHHHHHHH
Q 021750 282 MTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~~ 302 (308)
++||++|+|+++++++|.+.+
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCC
T ss_pred EEEcCCCCCHHHHHHHHHHHH
Confidence 999999999999999997654
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.7e-22 Score=166.18 Aligned_cols=152 Identities=22% Similarity=0.285 Sum_probs=103.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
..+|+++|.+|||||||+++|++.++ ..+.++.+.+ ...+.+++ .+.+|||||... ++.++..|+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~-~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~ 89 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRL-ATLQPTWHPT--SEELAIGNIKFTTFDLGGHIQ----------ARRLWKDYFP 89 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCC-CCCCCCCSCE--EEEEEETTEEEEEEECCCSGG----------GTTSGGGGCT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCC-CccccCCCCC--eEEEEECCEEEEEEECCCCHH----------HHHHHHHHHh
Confidence 45999999999999999999998764 3444555543 34555665 789999999643 2223334443
Q ss_pred hcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh----
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF---- 274 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---- 274 (308)
.++++++|+|++++.+.... .+...+. ..++|+++|+||+|+.+.. .. +++.+.++...
T Consensus 90 ---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~~---~~~~~~~~~~~~~~~ 157 (190)
T 1m2o_B 90 ---EVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV------SE---AELRSALGLLNTTGS 157 (190)
T ss_dssp ---TCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC------CH---HHHHHHTTCSSCCC-
T ss_pred ---cCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCC------CH---HHHHHHhCCcccccc
Confidence 34669999999987665443 1222222 3689999999999997621 22 23333332211
Q ss_pred -----cCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 275 -----QTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 275 -----~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
...++++++||++|+|++++|++|.+.
T Consensus 158 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 158 QRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp --CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 123679999999999999999998753
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=166.38 Aligned_cols=157 Identities=15% Similarity=0.178 Sum_probs=100.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC----CEEEecCCCcccCCCchhhhhchHH-HH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND----SWYLVDLPGYGYAAAPRELRTDWDK-FT 198 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~liDtpG~~~~~~~~~~~~~~~~-~~ 198 (308)
..++|+++|.+|||||||+++|++..+.. ..++++.....+.+++ .+.+|||||.. .+.. ++
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 72 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRD---TQTSITDSSAIYKVNNNRGNSLTLIDLPGHE----------SLRFQLL 72 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCC---BCCCCSCEEEEEECSSTTCCEEEEEECCCCH----------HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc---ccCCcceeeEEEEecCCCccEEEEEECCCCh----------hHHHHHH
Confidence 45799999999999999999999876432 2333333333455552 59999999963 3444 55
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHH---HHHHHh-----ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHH
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDL---EYASWL-----GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELI 270 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~---~l~~~~-----~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 270 (308)
..|+.. ++++++|+|+++....... .+..++ ...++|+++|+||+|+..... .....+.+.+.+
T Consensus 73 ~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----~~~~~~~l~~~l 144 (214)
T 2fh5_B 73 DRFKSS---ARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS-----AKLIQQQLEKEL 144 (214)
T ss_dssp HHHGGG---EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC-----HHHHHHHHHHHH
T ss_pred HHHHhh---CCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc-----HHHHHHHHHHHH
Confidence 566544 4569999999863211111 111111 134789999999999986543 333344444443
Q ss_pred H-------------------h-hhc------------CCCCEEEeecCCC------CCHHHHHHHHHHH
Q 021750 271 Q-------------------G-FFQ------------TAPPWIMTSSVTN------QGRDEILLHMAQL 301 (308)
Q Consensus 271 ~-------------------~-~~~------------~~~~~~~vSA~~g------~gi~el~~~i~~~ 301 (308)
. . ... ..++|++|||++| +|++++|++|.+.
T Consensus 145 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 145 NTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp HHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred HHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 3 1 111 1567999999999 9999999999875
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.3e-22 Score=166.70 Aligned_cols=158 Identities=13% Similarity=0.139 Sum_probs=104.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCC-------CCceEEEEE----E-EeCC---CEEEecCCCcccCCCc
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKT-------PGKTQCINH----F-RIND---SWYLVDLPGYGYAAAP 187 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~-------~~~t~~~~~----~-~~~~---~~~liDtpG~~~~~~~ 187 (308)
...+||+++|.+|||||||++.+.+.. ....... ...|..... + ..++ .+.+|||||..
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----- 85 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV----- 85 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCC-----
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChH-----
Confidence 345799999999999999998887653 2222111 111221111 1 1222 58899999964
Q ss_pred hhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhH----HHHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCC
Q 021750 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPID----LEYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKR 258 (308)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~----~~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~ 258 (308)
.+..++..++..+ +++++|+|++.+....+ ..+..|+.. .++|+++|+||+|+.+..
T Consensus 86 -----~~~~~~~~~~~~~---d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~------ 151 (198)
T 3t1o_A 86 -----FYNASRKLILRGV---DGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDAL------ 151 (198)
T ss_dssp -----SCSHHHHHHTTTC---CEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCC------
T ss_pred -----HHHHHHHHHHhcC---CEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccccc------
Confidence 3444666666554 45899999985433222 134455543 589999999999997642
Q ss_pred chhhHHHHHHHHHhhhcCCC-CEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 259 PEENLNDFQELIQGFFQTAP-PWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~-~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
..+.++++.+.. .. +++++||++|+|++++|++|.+.+.+..
T Consensus 152 ~~~~~~~~~~~~------~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 152 PVEMVRAVVDPE------GKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp CHHHHHHHHCTT------CCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhc------CCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 334444433322 35 8999999999999999999999887654
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=164.30 Aligned_cols=158 Identities=14% Similarity=0.136 Sum_probs=104.9
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
.....++|+++|.+|||||||+++|++.++. ...++.+ .....+..++ .+.+|||||... +..++.
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 91 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKNICFTVWDVGGQDK----------IRPLWR 91 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETTEEEEEEECC---------------CTTHH
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECCEEEEEEECCCCHh----------HHHHHH
Confidence 3455679999999999999999999987653 2333333 3334455555 799999999642 233555
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
.++..+ +++++|+|++++.+.... .+..++. ..++|+++|+||+|+..... .+++.+.+....
T Consensus 92 ~~~~~~---d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~---------~~~i~~~~~~~~ 159 (192)
T 2b6h_A 92 HYFQNT---QGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP---------VSELTDKLGLQH 159 (192)
T ss_dssp HHHHTC---CEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---------HHHHHHHTTGGG
T ss_pred HHhccC---CEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC---------HHHHHHHhCccc
Confidence 666554 458999999987655432 2222222 24799999999999975421 334444433221
Q ss_pred --cCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 275 --QTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 275 --~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
....+++++||++|.|+++++++|.+.+.
T Consensus 160 ~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 160 LRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp CSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred ccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 12357999999999999999999987653
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=163.24 Aligned_cols=159 Identities=14% Similarity=0.157 Sum_probs=106.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
...++|+++|.+|||||||+++|+++++ ..+.++.+.. ...+.+++ .+.+|||||..... ..+..+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 82 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKNLKLNVWDLGGQTSIR----------PYWRCY 82 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETTEEEEEEEEC----CC----------TTGGGT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECCEEEEEEECCCCHhHH----------HHHHHH
Confidence 4457999999999999999999998765 4555565543 33445544 78999999975311 123333
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--h
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--F 274 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~ 274 (308)
+ ..++++++|+|++++.+.... .+...+. ..++|+++|+||+|+.+.. . .+++.+.+... .
T Consensus 83 ~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~---~~~i~~~~~~~~~~ 150 (183)
T 1moz_A 83 Y---ADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL------S---ASEVSKELNLVELK 150 (183)
T ss_dssp T---TTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC------C---HHHHHHHTTTTTCC
T ss_pred h---ccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC------C---HHHHHHHhCccccc
Confidence 3 345679999999987665543 2223332 2679999999999997532 1 23333333211 1
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
....+++++||++|+|+++++++|.+.+.+..
T Consensus 151 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~q 182 (183)
T 1moz_A 151 DRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ 182 (183)
T ss_dssp SSCEEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEccCCCCcCHHHHHHHHHHHHHhcc
Confidence 12357999999999999999999999887643
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=165.90 Aligned_cols=165 Identities=21% Similarity=0.175 Sum_probs=104.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+++|++..+.....++.+... ...+..++ .+.+|||||..... .++.
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~ 86 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFD----------KLRP 86 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCS----------SSGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHH----------HHhH
Confidence 4457999999999999999999998764333333333222 23344554 57799999974321 1333
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHH--HHHHhcc--CCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHH
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLE--YASWLGQ--NQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQ 267 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~~--~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~ 267 (308)
.++.. ++++++|+|++++.+..+.. +...+.. .++|+++|+||+|+..... ....+..+....+.
T Consensus 87 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 163 (201)
T 2q3h_A 87 LCYTN---TDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLA 163 (201)
T ss_dssp GGGTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred hhcCC---CcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHH
Confidence 34433 45699999999766554431 2222221 4899999999999975321 01113444555555
Q ss_pred HHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 268 ELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 268 ~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
+.++ ..+++++||++|+|++++|++|.+.+.+..
T Consensus 164 ~~~~-----~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 164 EEIK-----AASYIECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp HHHT-----CSEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HhcC-----CcEEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 5543 248999999999999999999998876554
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-21 Score=160.16 Aligned_cols=161 Identities=24% Similarity=0.271 Sum_probs=111.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++..+ .....++++.. ...+.+++ .+.+|||||........ ....+...|
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----~~~~~~~~~ 80 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENV--YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS----IDEIIARDY 80 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCE--EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSS----HHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc--cccCCCCeeccceEEEEEeCCcEEEEEECCCcCcccccc----HHHHHHHHH
Confidence 36999999999999999999998753 34555665543 34455555 79999999975432111 112355566
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
+... .++++++|+|.++.. ....+...+...+.|+++|+||+|+..... .....+.+.+.++ .+++
T Consensus 81 ~~~~-~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~------~~~~ 146 (188)
T 2wjg_A 81 IINE-KPDLVVNIVDATALE--RNLYLTLQLMEMGANLLLALNKMDLAKSLG-----IEIDVDKLEKILG------VKVV 146 (188)
T ss_dssp HHHH-CCSEEEEEEEGGGHH--HHHHHHHHHHTTTCCEEEEEECHHHHHHTT-----CCCCHHHHHHHHT------SCEE
T ss_pred Hhcc-CCCEEEEEecchhHH--HHHHHHHHHHhcCCCEEEEEEhhhcccccc-----chHHHHHHHHHhC------CCeE
Confidence 5542 246799999987521 112233344457899999999999875432 1234556655553 6899
Q ss_pred EeecCCCCCHHHHHHHHHHHHHHH
Q 021750 282 MTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
++||++|+|+++++++|.+.+...
T Consensus 147 ~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 147 PLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp ECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred EEEecCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999887543
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=168.04 Aligned_cols=163 Identities=16% Similarity=0.176 Sum_probs=96.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+... ...+.+++ .+.+|||||.. .+..++..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~~~ 101 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQD----------DYDRLRPL 101 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC----------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCch----------hhhHHHHH
Confidence 457999999999999999999998765333333333222 23344444 58899999953 33335555
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCcccC--------CCCCchhhHHHHHH
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKKN--------GGKRPEENLNDFQE 268 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~~--------~~~~~~~~~~~~~~ 268 (308)
++. .++++++|+|++++.+..... +...+. ..++|+++|+||+|+...... ...+..+....+.+
T Consensus 102 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 178 (214)
T 2j1l_A 102 FYP---DASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMAR 178 (214)
T ss_dssp ------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred Hhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHH
Confidence 554 345699999998765544321 222222 147999999999999864310 00123333444444
Q ss_pred HHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 269 LIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 269 ~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.++ ..+++++||++|.|++++|++|.+.+.+.
T Consensus 179 ~~~-----~~~~~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 179 SVG-----AVAYLECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp HTT-----CSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred hcC-----CCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 332 24899999999999999999999887654
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-22 Score=172.47 Aligned_cols=156 Identities=16% Similarity=0.206 Sum_probs=112.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
....+||+++|.+|||||||+++|+.+.+...+.+++|++.....+..++ .+.+|||||... +..++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~ 81 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK----------FGGLR 81 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGG----------TSCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHH----------HhHHH
Confidence 34457999999999999999999777666567788888888776666654 689999999542 22244
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
..++.. ++++++|+|++++.+..+. ..|+. ..++|+++|+||+|+.+... ......+.+..
T Consensus 82 ~~~~~~---~~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------~~~~~~~~~~~--- 147 (221)
T 3gj0_A 82 DGYYIQ---AQCAIIMFDVTSRVTYKNV--PNWHRDLVRVCENIPIVLCGNKVDIKDRKV------KAKSIVFHRKK--- 147 (221)
T ss_dssp HHHHTT---CCEEEEEEETTCHHHHHTH--HHHHHHHHHHSTTCCEEEEEECTTSSSCSS------CGGGCCHHHHH---
T ss_pred HHHHhc---CCEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCEEEEEECCccccccc------cHHHHHHHHHc---
Confidence 455554 4459999999976554432 22222 14799999999999976432 12233333333
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..+++++||++|.|++++|++|.+.+..
T Consensus 148 ---~~~~~~~Sa~~~~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 148 ---NLQYYDISAKSNYNFEKPFLWLARKLIG 175 (221)
T ss_dssp ---TCEEEECBGGGTBTTTHHHHHHHHHHHT
T ss_pred ---CCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 2789999999999999999999987643
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=9.2e-21 Score=161.42 Aligned_cols=176 Identities=37% Similarity=0.559 Sum_probs=116.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
....+|+++|.+|||||||+|+|++..+...+.+++|++.....+.+++.+.+|||||+.......+....|......|+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 103 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYL 103 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHHHHH
Confidence 34458999999999999999999997655566778888876666666668999999998643222222224555566666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
.....++.+++++|.+.+.+..+.++..|+...+.|+++|+||+|+....+ .......+...+.+ ......+++
T Consensus 104 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~-----~~~~~~~~~~~~~~-~~~~~~~~~ 177 (210)
T 1pui_A 104 EKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGA-----RKAQLNMVREAVLA-FNGDVQVET 177 (210)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHH-----HHHHHHHHHHHHGG-GCSCEEEEE
T ss_pred HhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchh-----HHHHHHHHHHHHHh-cCCCCceEE
Confidence 666677889999999988777666677777778899999999999875321 11113333333332 222357899
Q ss_pred eecCCCCCHHHHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+||+++.|+++++++|.+.+.+
T Consensus 178 ~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 178 FSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp CBTTTTBSHHHHHHHHHHHHC-
T ss_pred EeecCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999887643
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-22 Score=168.92 Aligned_cols=158 Identities=20% Similarity=0.222 Sum_probs=76.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC--CcceeccCCCCceEEEEEEEeCC-----CEEEecCCCcccCCCchhhhhchHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRR--KKLALTSKTPGKTQCINHFRIND-----SWYLVDLPGYGYAAAPRELRTDWDK 196 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~--~~~~~~~~~~~~t~~~~~~~~~~-----~~~liDtpG~~~~~~~~~~~~~~~~ 196 (308)
..++|+++|.+|||||||+++|++. .+.....++.+.......+.+++ .+.+|||||.. .+..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~ 88 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD----------LYKE 88 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH----------HHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH----------HHHH
Confidence 3469999999999999999999987 44323333333223334555554 48999999963 3334
Q ss_pred HHHHHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhcc------CCCCEEEEeecCCCCC-cccCCCCCchhhHHHHHH
Q 021750 197 FTKDYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLGQ------NQIPMTLVFTKCDKRK-KKKNGGKRPEENLNDFQE 268 (308)
Q Consensus 197 ~~~~~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~~------~~~pvivV~NK~Dl~~-~~~~~~~~~~~~~~~~~~ 268 (308)
++..++ ..++++++|+|++++.+.... .+...+.. .++|+++|+||+|+.. ... +..+.++++.+
T Consensus 89 ~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~----v~~~~~~~~~~ 161 (208)
T 2yc2_C 89 QISQYW---NGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ----VRLDMAQDWAT 161 (208)
T ss_dssp HHSTTC---CCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------C----CCHHHHHHHHH
T ss_pred HHHHHH---hhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhcc----CCHHHHHHHHH
Confidence 444443 345679999999876554332 11222211 4789999999999986 332 23455555554
Q ss_pred HHHhhhcCCCCEEEeecCC-CCCHHHHHHHHHHHHHH
Q 021750 269 LIQGFFQTAPPWIMTSSVT-NQGRDEILLHMAQLRNY 304 (308)
Q Consensus 269 ~~~~~~~~~~~~~~vSA~~-g~gi~el~~~i~~~~~~ 304 (308)
.++ .+++++||++ |.|++++|++|.+.+.+
T Consensus 162 ~~~------~~~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 162 TNT------LDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp HTT------CEEEECCC-------CHHHHHHHHHHHH
T ss_pred HcC------CEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 432 7899999999 99999999999987654
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=161.75 Aligned_cols=157 Identities=24% Similarity=0.276 Sum_probs=103.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.+|+++|.+|||||||+|+|++... ..++..+++|.+ ...+.+++ .+.+|||||+.......+ ...+... ..++
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-~~~~~~~-~~~~ 81 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREA-AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVE-RIGIERA-WQEI 81 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC-SCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHH-HHHHHHH-HHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-ceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHH-HHHHHHH-HHHH
Confidence 5899999999999999999998753 345667777653 34555665 789999999854221111 0001111 1233
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPP 279 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (308)
. .++++++|+|+++..+..+..+...+. ..++|+++|+||+|+.+... ... . ....+
T Consensus 82 ~---~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~----------~--~~~~~ 141 (172)
T 2gj8_A 82 E---QADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL-----GMS----------E--VNGHA 141 (172)
T ss_dssp H---TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----EEE----------E--ETTEE
T ss_pred H---hCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh-----hhh----------h--ccCCc
Confidence 3 345699999999877655443333222 24699999999999864211 000 0 01367
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 280 WIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 280 ~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
++++||++|+|++++|++|.+.+...
T Consensus 142 ~~~~SA~~g~gv~~l~~~l~~~~~~~ 167 (172)
T 2gj8_A 142 LIRLSARTGEGVDVLRNHLKQSMGFD 167 (172)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHC---
T ss_pred eEEEeCCCCCCHHHHHHHHHHHhhhc
Confidence 99999999999999999999877543
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=163.72 Aligned_cols=158 Identities=18% Similarity=0.159 Sum_probs=107.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
...++|+++|.+|||||||+++|++.++. ...++.+.. ...+.+++ .+.+|||||..... ..+..+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~--~~~~~~~~~~~~~~Dt~G~~~~~----------~~~~~~ 86 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVN--LETLQYKNISFEVWDLGGQTGVR----------PYWRCY 86 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCC--EEEEEETTEEEEEEEECCSSSSC----------CCCSSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceE--EEEEEECCEEEEEEECCCCHhHH----------HHHHHH
Confidence 34579999999999999999999987653 334444433 33444555 79999999975321 122233
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--h
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--F 274 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~ 274 (308)
+. .++++++|+|++++.+.... .+..++.. .++|+++|+||+|+.+... .+++.+.+... .
T Consensus 87 ~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---------~~~~~~~~~~~~~~ 154 (189)
T 2x77_A 87 FS---DTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS---------EAEIAEQLGVSSIM 154 (189)
T ss_dssp ST---TCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC---------HHHHHHHTTGGGCC
T ss_pred hh---cCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC---------HHHHHHHhChhhcc
Confidence 33 45669999999988665543 23333332 5799999999999976431 23333333211 1
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
....+++++||++|+|+++++++|.+.+.+.
T Consensus 155 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 155 NRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp SSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred CCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 1235799999999999999999999988653
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=162.96 Aligned_cols=160 Identities=18% Similarity=0.120 Sum_probs=103.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++..+.....++.+... ...+.+++ .+.+|||||... +..++..+
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~ 73 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQED----------YDRLRPLS 73 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGG----------GTTTGGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHh----------HHHHHHHh
Confidence 35999999999999999999998765433333333322 22334444 577999999742 22233333
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHH--HHHHhcc--CCCCEEEEeecCCCCCcccC--------CCCCchhhHHHHHHH
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLE--YASWLGQ--NQIPMTLVFTKCDKRKKKKN--------GGKRPEENLNDFQEL 269 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~~--~~~pvivV~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~ 269 (308)
+. .++++++|+|++++.+..+.. +...+.. .++|+++|+||+|+.+.... ...+..+....+.+.
T Consensus 74 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 150 (186)
T 1mh1_A 74 YP---QTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 150 (186)
T ss_dssp CT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred cc---CCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHh
Confidence 33 446699999998765554431 2222222 38999999999999754210 001223333334333
Q ss_pred HHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 270 IQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 270 ~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++ ..+++++||++|+|+++++++|.+.+.
T Consensus 151 ~~-----~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 151 IG-----AVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp TT-----CSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred cC-----CcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 22 248999999999999999999988763
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-21 Score=164.73 Aligned_cols=160 Identities=16% Similarity=0.205 Sum_probs=104.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||+++|++..+.....++.+.... ..+.+++ .+.+|||||... +..++..+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~ 93 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQED----------YDRLRPLS 93 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGG----------GTTTGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchh----------HHHHHHHh
Confidence 469999999999999999999997654333333333322 2344444 688999999542 22233333
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc--CCCCEEEEeecCCCCCcccC--------CCCCchhhHHHHHHH
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ--NQIPMTLVFTKCDKRKKKKN--------GGKRPEENLNDFQEL 269 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~--~~~pvivV~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~ 269 (308)
+. .++++++|+|+++..+.... .+...+.. .++|+++|+||+|+...... ...+..+....+.+.
T Consensus 94 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 170 (201)
T 2gco_A 94 YP---DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANR 170 (201)
T ss_dssp CT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred cC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHh
Confidence 33 34569999999876544432 22223322 48999999999999864210 001233334444333
Q ss_pred HHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 270 IQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 270 ~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++ ..+++++||++|+|+++++++|.+.+-
T Consensus 171 ~~-----~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 171 IS-----AFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TT-----CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CC-----CcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 32 237999999999999999999988653
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.85 E-value=5.6e-22 Score=164.67 Aligned_cols=161 Identities=19% Similarity=0.163 Sum_probs=97.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||++++++..+.....++.+.... ..+..++ .+.+|||||... +..++.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 74 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQED----------YNRLRP 74 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CT----------TTTTGG
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChh----------hhhhHH
Confidence 34579999999999999999999987643222222221111 1112222 567999999642 222333
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHH--HHHHhcc--CCCCEEEEeecCCCCCcccC------CCCCchhhHHHHHHH
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLE--YASWLGQ--NQIPMTLVFTKCDKRKKKKN------GGKRPEENLNDFQEL 269 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~~--~~~pvivV~NK~Dl~~~~~~------~~~~~~~~~~~~~~~ 269 (308)
.++. .++++++|+|++++.+..+.. +...+.. .++|+++|+||+|+.+.... ...+..+..+++.+.
T Consensus 75 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~ 151 (182)
T 3bwd_D 75 LSYR---GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKL 151 (182)
T ss_dssp GGGT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHH
T ss_pred hhcc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHH
Confidence 4443 345699999998765544431 2222222 47999999999999764320 011233444555544
Q ss_pred HHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 270 IQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 270 ~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
++ ..+++++||++|+|++++|++|.+.+
T Consensus 152 ~~-----~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 152 IG-----APAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HT-----CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cC-----CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 43 24899999999999999999998764
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-21 Score=164.87 Aligned_cols=160 Identities=16% Similarity=0.190 Sum_probs=100.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+++|++..+.....++.+.... ..+..++ .+.+|||||.... ..++..+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~ 93 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDY----------DRLRPLS 93 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTC----------TTTGGGG
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHH----------HHHHHhh
Confidence 359999999999999999999998654333344343332 2344554 6889999996431 1123333
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc--CCCCEEEEeecCCCCCcccC--------CCCCchhhHHHHHHH
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ--NQIPMTLVFTKCDKRKKKKN--------GGKRPEENLNDFQEL 269 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~--~~~pvivV~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~ 269 (308)
+ ..++++++|+|+++..+.... .+...+.. .++|+++|+||+|+...... ...+..+....+.+.
T Consensus 94 ~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 170 (207)
T 2fv8_A 94 Y---PDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVR 170 (207)
T ss_dssp C---TTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred c---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHh
Confidence 3 334669999999876544332 22222322 47999999999999764210 001222333333333
Q ss_pred HHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 270 IQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 270 ~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++ ..+++++||++|+|+++++++|.+.+-
T Consensus 171 ~~-----~~~~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 171 IQ-----AYDYLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp TT-----CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cC-----CCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22 237999999999999999999998764
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-21 Score=167.64 Aligned_cols=162 Identities=18% Similarity=0.133 Sum_probs=106.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+++|++..+.....++.+... ...+.+++ .+.+|||||... +..++..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 76 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQED----------YSRLRPL 76 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCC----------CCC--CG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHH----------HHHHHHh
Confidence 457999999999999999999998765433334444332 22344444 688999999743 2223444
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc--CCCCEEEEeecCCCCCcccC----CCCCchhhHHHHHHHHHh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ--NQIPMTLVFTKCDKRKKKKN----GGKRPEENLNDFQELIQG 272 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~--~~~pvivV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~ 272 (308)
++.. ++++++|+|.+++.+..+. .+...+.. .+.|+++|+||+|+.+.... ...+..+..+++.+.++
T Consensus 77 ~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~- 152 (212)
T 2j0v_A 77 SYRG---ADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG- 152 (212)
T ss_dssp GGTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT-
T ss_pred hccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC-
Confidence 4443 4569999999876554432 12222222 37999999999999764320 00123444555555443
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..+++++||++|+|++++|++|.+.+.+
T Consensus 153 ----~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 153 ----AAAYIECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp ----CSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred ----CceEEEccCCCCCCHHHHHHHHHHHHhh
Confidence 2489999999999999999999987653
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.4e-21 Score=180.11 Aligned_cols=159 Identities=21% Similarity=0.262 Sum_probs=101.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe--CC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI--ND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.||||||||+|+|++... +.+.+.+|+|++...... ++ .+.+|||||+..... ++...+...+..+
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~--~~~~~~~~~~~~~ 79 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE--PFLAQIRQQAEIA 79 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEEC-C-----------CEEEECTTCSSCCEEEC-----------CHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCCccceEEEEEEECCceEEEEECCCCCCcch--hHHHHHHHHHHHH
Confidence 36899999999999999999998754 678889999987554443 33 799999999864321 1233455556666
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
+..+ |++++|+|+..+.+..+.++..++...++|+++|+||+|+...... ..++ +. ++ ..+++
T Consensus 80 ~~~a---d~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~--------~~~~---~~--lg-~~~~~ 142 (436)
T 2hjg_A 80 MDEA---DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRAN--------IYDF---YS--LG-FGEPY 142 (436)
T ss_dssp HHHC---SEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----C--------CCSS---GG--GS-SCCCE
T ss_pred HHhC---CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhh--------HHHH---HH--cC-CCCeE
Confidence 6554 4599999999998888888888888889999999999998753210 0111 11 11 13789
Q ss_pred EeecCCCCCHHHHHHHHHHHHH
Q 021750 282 MTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++||++|.|++++++++.+.+.
T Consensus 143 ~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 143 PISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp ECBTTTTBTHHHHHHHHHHTGG
T ss_pred EEeCcCCCChHHHHHHHHHhcC
Confidence 9999999999999999987664
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-21 Score=162.11 Aligned_cols=161 Identities=19% Similarity=0.178 Sum_probs=105.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
...+|+++|.+|||||||+++|++..+.....++.+... ...+.+++ .+.+|||||... +..+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 74 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY----------YDNVRPL 74 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGG----------GTTTGGG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChh----------hhhhHHh
Confidence 346999999999999999999999765433333333322 22334443 588999999642 2223333
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc--CCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHHH
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ--NQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQE 268 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~--~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~~ 268 (308)
++. .++++++|+|.+++.+..+. .+...+.. .+.|+++|+||+|+..... ....+..+..+++.+
T Consensus 75 ~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 151 (184)
T 1m7b_A 75 SYP---DSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK 151 (184)
T ss_dssp GCT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred hcC---CCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHH
Confidence 333 34569999999976554432 12222221 4799999999999975310 011234455556655
Q ss_pred HHHhhhcCCCCEEEeecC-CCCCHHHHHHHHHHHHH
Q 021750 269 LIQGFFQTAPPWIMTSSV-TNQGRDEILLHMAQLRN 303 (308)
Q Consensus 269 ~~~~~~~~~~~~~~vSA~-~g~gi~el~~~i~~~~~ 303 (308)
.++ ..+++++||+ +|.|++++|++|.+.+-
T Consensus 152 ~~~-----~~~~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 152 QIG-----AATYIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp HHT-----CSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred HcC-----CcEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence 543 3689999999 68999999999988753
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.8e-21 Score=160.97 Aligned_cols=168 Identities=14% Similarity=0.069 Sum_probs=98.7
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEe--C--CCEEEecCCCcccCCCchhhhhch
Q 021750 119 DCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI--N--DSWYLVDLPGYGYAAAPRELRTDW 194 (308)
Q Consensus 119 ~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~--~--~~~~liDtpG~~~~~~~~~~~~~~ 194 (308)
..+....+||+++|.+|||||||++++.+... ...+.....+.......+ + ..+.+|||||... +
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~ 82 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMD----------F 82 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSCCC-GGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCC----------T
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhcCC-CcceeeeccccceeeeeccCCCeeEEEEEECCCCHH----------H
Confidence 34456678999999999999999999988532 222211111211122222 2 2799999999642 1
Q ss_pred HHHH---HHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-----CCCCEEEEeecCCCCCcccCCCCCchhhHHHH
Q 021750 195 DKFT---KDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-----NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDF 266 (308)
Q Consensus 195 ~~~~---~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-----~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~ 266 (308)
.... ..|+..+ +++++|+|+++........+..|+.. .+.|+++|+||+|+........ .......+.
T Consensus 83 ~~~~~~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~v~~~~ 158 (196)
T 3llu_A 83 FDPTFDYEMIFRGT---GALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIE-TQRDIHQRA 158 (196)
T ss_dssp TCTTCCHHHHHHTC---SEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHH-HHHHHHHHH
T ss_pred HhhhhhcccccccC---CEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhH-HHhHHHHHH
Confidence 1122 4666654 45899999998622222344455443 5899999999999876321000 000111111
Q ss_pred HHHHHhhh--cCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 267 QELIQGFF--QTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 267 ~~~~~~~~--~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+.+.... ...++++++||++ +|++++|+.|.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 159 NDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred HHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 22222211 2347899999999 99999999998753
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=166.97 Aligned_cols=160 Identities=23% Similarity=0.301 Sum_probs=112.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|.+|||||||+|+|++..+ .+...+++|... ..+.+++ .+.+|||||+........ ...+.+.|
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~--~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----~~~~~~~~ 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ--HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSI----DELIARNF 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE--EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCH----HHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc--ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCH----HHHHHHHh
Confidence 46999999999999999999999754 456677776654 3445555 799999999864222111 11244455
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCC-CCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCE
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ-IPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW 280 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~-~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (308)
+. ...+|++++|+|+++.. ....+...+.+.+ +|+++|+||+|+.+... .....+.+.+.++ +++
T Consensus 77 ~~-~~~~d~vi~v~D~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~l~~~lg------~~~ 142 (271)
T 3k53_A 77 IL-DGNADVIVDIVDSTCLM--RNLFLTLELFEMEVKNIILVLNKFDLLKKKG-----AKIDIKKMRKELG------VPV 142 (271)
T ss_dssp HH-TTCCSEEEEEEEGGGHH--HHHHHHHHHHHTTCCSEEEEEECHHHHHHHT-----CCCCHHHHHHHHS------SCE
T ss_pred hh-ccCCcEEEEEecCCcch--hhHHHHHHHHhcCCCCEEEEEEChhcCcccc-----cHHHHHHHHHHcC------CcE
Confidence 43 34567899999998742 2223333334455 99999999999876443 1223556666554 789
Q ss_pred EEeecCCCCCHHHHHHHHHHHHHH
Q 021750 281 IMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 281 ~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+++||++|.|++++++++.+.+..
T Consensus 143 ~~~Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 143 IPTNAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp EECBGGGTBTHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999988754
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=159.02 Aligned_cols=159 Identities=16% Similarity=0.178 Sum_probs=100.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccC--CCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSK--TPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~--~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
..+||+++|.+|||||||+|+|++... .+... ..+.+.....+.+++ .+.+|||+|.... + . .+.
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~----~---~--~~~ 74 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHD-SMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE----N---E--WLH 74 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSC-CC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-----------C--TTG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcC-CcCccccccceeEEEEEEEECCeEEEEEEEEeccCcch----h---h--hHH
Confidence 346999999999999999999997432 12222 233333334455555 4678999985321 1 1 123
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHh----ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWL----GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~----~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
..|+..++ ++++|+|.++..++... .+...+ ...++|+++|+||+|+...+. +..+..+.+....
T Consensus 75 ~~~~~~~~---~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~----v~~~~~~~~a~~~--- 144 (192)
T 2cjw_A 75 DHCMQVGD---AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXRE----VSVSEGRAXAVVF--- 144 (192)
T ss_dssp GGHHHHCS---EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCC----SCHHHHHHHHHHT---
T ss_pred HhhcccCC---EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhcccc----ccHHHHHHHHHHh---
Confidence 34555444 48999999876555442 111212 224799999999999975432 2233333333222
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
.++++++||++|.|++++|++|.+.+...
T Consensus 145 ---~~~~~e~SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 145 ---DXKFIETSAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp ---TCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ---CCceEEeccccCCCHHHHHHHHHHHHHhh
Confidence 36899999999999999999999877543
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=180.46 Aligned_cols=157 Identities=21% Similarity=0.232 Sum_probs=91.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+|+|++.+. ..+++.+++|++. ..+.+++ .+.+|||||+.......+ .+ ......
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~-a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve---~~--gi~~~~ 307 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQER-AIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIE---HE--GIRRSR 307 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC-------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHH---HH--HHHHHH
Confidence 3799999999999999999999754 5688889988875 4455565 799999999864221111 10 112223
Q ss_pred HhcCCccEEEEEEeCCCCCCh----hHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKP----IDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~----~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
.....+|++++|+|++++.+. ...++...+. ++|+++|+||+|+..... ...+.+.+. . ..
T Consensus 308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~-------~~~~~l~~~-~-----~~ 372 (476)
T 3gee_A 308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANAD-------ALIRAIADG-T-----GT 372 (476)
T ss_dssp CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTH-------HHHHHHHHH-H-----TS
T ss_pred hhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccc-------hhHHHHHhc-C-----CC
Confidence 345567889999999998876 3334444443 799999999999986432 111222222 1 26
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+++++||++|+|+++++++|.+.+.
T Consensus 373 ~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 373 EVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp CEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999998875
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-21 Score=184.22 Aligned_cols=173 Identities=19% Similarity=0.202 Sum_probs=103.4
Q ss_pred HhhcccCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC---CCEEEecCCCcccCCC
Q 021750 110 FVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN---DSWYLVDLPGYGYAAA 186 (308)
Q Consensus 110 f~~s~~~~~~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~ 186 (308)
...++...|....-..++|+|+|.+|||||||+|+|++.+. +.+...+|+|++....... ..+.+|||||+....
T Consensus 8 ~~~~~~~~~~~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~- 85 (456)
T 4dcu_A 8 HHHSSGLVPRGSHMGKPVVAIVGRPNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD- 85 (456)
T ss_dssp ---------------CCEEEEECSSSSSHHHHHHHHEEEEE-C-----------CEEEECTTCSSCCEEECCCC------
T ss_pred ccccCCCCCChhhcCCCEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcc-
Confidence 34556666777777788999999999999999999999754 5678899999876554442 379999999986322
Q ss_pred chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHH
Q 021750 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDF 266 (308)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~ 266 (308)
.....++......++..+ |++++|+|+..+.+..+.++..++...++|+++|+||+|+.+... ..
T Consensus 86 -~~~~~~~~~~~~~~~~~a---d~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~-----------~~ 150 (456)
T 4dcu_A 86 -EPFLAQIRQQAEIAMDEA---DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA-----------NI 150 (456)
T ss_dssp --CCHHHHHHHHHHHHHHC---SEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC--------------------
T ss_pred -hHHHHHHHHHHHhhHhhC---CEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhh-----------hH
Confidence 122235555666666654 459999999998888888889999888999999999999874321 11
Q ss_pred HHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 267 QELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 267 ~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+.+.. . ...++++||++|.|++++++++.+.+
T Consensus 151 ~e~~~l--g-~~~~~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 151 YDFYSL--G-FGEPYPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp CCSGGG--S-SSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred HHHHHc--C-CCceEEeecccccchHHHHHHHHhhc
Confidence 111111 1 23578999999999999999987755
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=7e-21 Score=182.13 Aligned_cols=157 Identities=22% Similarity=0.303 Sum_probs=113.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcc-cCCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYG-YAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~-~~~~~~~~~~~~~~~~~~~ 201 (308)
++|+|+|.||||||||+|+|++.++ +++++.+++|++. ..+.+++ .+.+|||||+. +.....+ ...+ .....+
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~-a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve-~~gi-~~~~~~ 320 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDR-AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVE-RLGI-ERTLQE 320 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTB-CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCC-CCCH-HHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCC-CccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHH-HHHH-HHHHHH
Confidence 5899999999999999999999754 5678888888764 4455555 79999999987 4322111 0001 123344
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
+..+ |++++|+|++++.+..+.++...+ .++|+++|+||+|+.... . .+++.+.. ....+++
T Consensus 321 ~~~a---D~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~------~---~~~~~~~~----~~~~~~i 382 (482)
T 1xzp_A 321 IEKA---DIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKI------N---EEEIKNKL----GTDRHMV 382 (482)
T ss_dssp HHHC---SEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCC------C---HHHHHHHH----TCSTTEE
T ss_pred hhcc---cEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECccccccc------C---HHHHHHHh----cCCCcEE
Confidence 4444 559999999988887776666555 479999999999997531 1 22332222 2236899
Q ss_pred EeecCCCCCHHHHHHHHHHHHH
Q 021750 282 MTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++||++|+|+++++++|.+.+.
T Consensus 383 ~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 383 KISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp EEEGGGTCCHHHHHHHHHHHTH
T ss_pred EEECCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998654
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-21 Score=165.83 Aligned_cols=160 Identities=18% Similarity=0.137 Sum_probs=100.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...+||+++|.+|||||||+++|++..+.....++.+.. ....+.+++ .+.+|||||... +..++.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~ 96 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGLED----------YDRLRP 96 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEE-EEEEEECC-CEEEEEEEEECCSGG----------GTTTGG
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecce-eEEEEEECCEEEEEEEEECCCchh----------hHHHHH
Confidence 345799999999999999999999875432222222211 122333443 466999999642 222333
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHH--HHHHhcc--CCCCEEEEeecCCCCCcccC--------CCCCchhhHHHHH
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLE--YASWLGQ--NQIPMTLVFTKCDKRKKKKN--------GGKRPEENLNDFQ 267 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~~--~~~pvivV~NK~Dl~~~~~~--------~~~~~~~~~~~~~ 267 (308)
.++. .++++++|+|++++.+..+.. +...+.. .++|+++|+||+|+...... ...+..+....+.
T Consensus 97 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 173 (204)
T 4gzl_A 97 LSYP---QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 173 (204)
T ss_dssp GGCT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHH
Confidence 3333 446699999999876555432 2223322 48999999999999764320 0001223333333
Q ss_pred HHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 268 ELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 268 ~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
+.++ ..+++++||++|+|++++|++|.+.
T Consensus 174 ~~~~-----~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 174 KEIG-----AVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HHTT-----CSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred HhcC-----CcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 3332 2469999999999999999999874
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.1e-21 Score=163.93 Aligned_cols=162 Identities=19% Similarity=0.182 Sum_probs=105.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...+||+++|.+|||||||+++|++..+.....++.+... ...+.+++ .+.+|||||... +..++.
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~ 94 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY----------YDNVRP 94 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGG----------GTTTGG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHh----------hhHHHH
Confidence 3456999999999999999999999865433333333322 22344443 588999999642 222333
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc--CCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHH
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ--NQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQ 267 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~--~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~ 267 (308)
.++. .++++++|+|.++..+..+. .+...+.. .+.|+++|+||+|+..... ....+..+..+.+.
T Consensus 95 ~~~~---~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 171 (205)
T 1gwn_A 95 LSYP---DSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA 171 (205)
T ss_dssp GGCT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred hhcc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHH
Confidence 3333 34569999999976554432 12222221 4799999999999975310 01123445555555
Q ss_pred HHHHhhhcCCCCEEEeecC-CCCCHHHHHHHHHHHHH
Q 021750 268 ELIQGFFQTAPPWIMTSSV-TNQGRDEILLHMAQLRN 303 (308)
Q Consensus 268 ~~~~~~~~~~~~~~~vSA~-~g~gi~el~~~i~~~~~ 303 (308)
+.++ ..++++|||+ +|+|++++|++|.+.+-
T Consensus 172 ~~~~-----~~~~~e~SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 172 KQIG-----AATYIECSALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp HHHT-----CSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred HHcC-----CCEEEEeeeccCCcCHHHHHHHHHHHHh
Confidence 5543 2589999999 68999999999988754
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-20 Score=171.56 Aligned_cols=156 Identities=14% Similarity=0.146 Sum_probs=105.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
..++|+|+|.+|||||||+++|++..+... .|+.......+...+ .+.+|||||.. .+..++..++
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~---~pT~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~ 230 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQD----------KIRPLWRHYF 230 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE---EEETTEEEEEEEETTEEEEEEECC---------------CCSHHHHH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc---ccccceEEEEEecCcEEEEEEECCCCH----------hHHHHHHHHh
Confidence 345999999999999999999998765322 232333334444454 79999999943 2333455555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHhcc---CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh--c
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQ---NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF--Q 275 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~---~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 275 (308)
.. ++++++|+|+++..+.... .+..++.. .++|+++|+||+|+.+... .+++.+.+.... .
T Consensus 231 ~~---ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~---------~~~i~~~~~~~~~~~ 298 (329)
T 3o47_A 231 QN---TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRH 298 (329)
T ss_dssp TT---EEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---------HHHHHHHHTCTTCCS
T ss_pred cc---CCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC---------HHHHHHHhchhhhhc
Confidence 44 4569999999987776543 22333332 4899999999999986432 344444444322 1
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
..++++++||++|.|++++|++|.+.+.+
T Consensus 299 ~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 299 RNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred CCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 34679999999999999999999987753
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.3e-23 Score=173.08 Aligned_cols=158 Identities=20% Similarity=0.253 Sum_probs=101.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
+..++|+++|.+|||||||+|+|++..+.....++.+.+.....+.+++ .+.+|||||..... .++.
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~ 100 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR----------TITS 100 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCC----------CCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHH----------HHHH
Confidence 3457999999999999999999998765444444445555556666655 58999999964321 1222
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
.++. .++++++|+|+++..+.... .+...+. ..++|+++|+||+|+.+.+. +..+..+.+.+.+
T Consensus 101 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----v~~~~~~~~~~~~----- 168 (199)
T 3l0i_B 101 SYYR---GAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKV----VDYTTAKEFADSL----- 168 (199)
T ss_dssp C--C---CCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CC----CCSCC-CHHHHTT-----
T ss_pred HHhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCcccc----CCHHHHHHHHHHc-----
Confidence 3333 34569999999986654443 1122222 24789999999999976543 1223344444443
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.++++++||++|.|++++|++|.+.+.
T Consensus 169 -~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 169 -GIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp -TCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred -CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 278999999999999999999987654
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-20 Score=167.26 Aligned_cols=176 Identities=19% Similarity=0.237 Sum_probs=112.6
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcce----eccCCCC----------------------ceEE-----------
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKLA----LTSKTPG----------------------KTQC----------- 163 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~----~~~~~~~----------------------~t~~----------- 163 (308)
+....++|+++|.+|||||||+|+|++.++.+ .++..|+ +++.
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 101 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 34556899999999999999999999976532 2334443 2211
Q ss_pred ---------------EEEEEe-CCCEEEecCCCcccCCC---chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChh
Q 021750 164 ---------------INHFRI-NDSWYLVDLPGYGYAAA---PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPI 224 (308)
Q Consensus 164 ---------------~~~~~~-~~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~ 224 (308)
...... ...+.+|||||+..... ...+...+..++..|+...+. ++++|+|++......
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~il~v~d~~~~~~~~ 179 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENC--LILAVSPANSDLANS 179 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTE--EEEEEEESSSCGGGC
T ss_pred HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCe--EEEEEecCCcchhhh
Confidence 000111 24799999999875321 122222456677777765443 366899998876655
Q ss_pred HH-HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 225 DL-EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 225 ~~-~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+. .+..++...++|+++|+||+|+.+.... . .+.+...+........+++++||++|.|+++++++|.+...
T Consensus 180 ~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~----~---~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 180 DALKIAKEVDPQGQRTIGVITKLDLMDEGTD----A---RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp HHHHHHHHHCTTCSSEEEEEECGGGSCTTCC----C---HHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEEEEccccCCCCch----H---HHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence 53 4677777778999999999999864320 1 11111110000001246889999999999999999987554
Q ss_pred HH
Q 021750 304 YW 305 (308)
Q Consensus 304 ~~ 305 (308)
.+
T Consensus 253 ~~ 254 (299)
T 2aka_B 253 FF 254 (299)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.6e-20 Score=163.93 Aligned_cols=164 Identities=18% Similarity=0.274 Sum_probs=94.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceecc------CCCCceEEE--EEEEeCC---CEEEecCCCcccCCCchhhhhc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTS------KTPGKTQCI--NHFRIND---SWYLVDLPGYGYAAAPRELRTD 193 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~------~~~~~t~~~--~~~~~~~---~~~liDtpG~~~~~~~~~~~~~ 193 (308)
.++|+++|.+|+|||||+|+|++.+...... ..++++... ..+..++ .+.+|||||+.+.....+ .
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~---~ 84 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN---C 84 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTT---T
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchh---h
Confidence 4799999999999999999998865322111 023333332 2333333 689999999875433222 3
Q ss_pred hHHHH-------HHHHHhc----------CCccEEEEEEeCCC-CCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCC
Q 021750 194 WDKFT-------KDYFLNR----------STLVSVFLLIDASI-PAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNG 255 (308)
Q Consensus 194 ~~~~~-------~~~~~~~----------~~~~~vl~viD~~~-~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~ 255 (308)
|..+. ..|+... ..+|++++++|.+. +....+.++..++.. ++|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~--- 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPE--- 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHH---
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHH---
Confidence 33343 4555441 12356788886654 677777777887776 89999999999987533
Q ss_pred CCCchhhHHHHHHHHHhhh-cCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 256 GKRPEENLNDFQELIQGFF-QTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
....+.+.+.+.+ ...++++++||++++|+++++++|.+.
T Consensus 161 ------e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 161 ------ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp ------HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred ------HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 2333333332222 235789999999999999999998764
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=7e-22 Score=167.90 Aligned_cols=161 Identities=18% Similarity=0.152 Sum_probs=101.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
...++|+++|.+|||||||+++|++..+.....++.+... ...+..++ .+.+|||||.. ++..++.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 96 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE----------DYDRLRP 96 (204)
Confidence 4457999999999999999999998754322222222111 11222222 56699999964 3334555
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhccC--CCCEEEEeecCCCCCcccCCC--------CCchhhHHHHH
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQN--QIPMTLVFTKCDKRKKKKNGG--------KRPEENLNDFQ 267 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~~~--~~pvivV~NK~Dl~~~~~~~~--------~~~~~~~~~~~ 267 (308)
.++..+ +++++|+|++++.+..+. .+...+... ++|+++|+||+|+.+...... .+..+....+.
T Consensus 97 ~~~~~~---d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 173 (204)
T 3th5_A 97 LSYPQT---DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 173 (204)
Confidence 555544 458999999887665543 222223222 799999999999976432100 01122222333
Q ss_pred HHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 268 ELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 268 ~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+.++ ..+++++||++|+|+++++++|.+.+
T Consensus 174 ~~~~-----~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 174 KEIG-----AVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 2222 13899999999999999999988653
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-20 Score=175.44 Aligned_cols=157 Identities=24% Similarity=0.293 Sum_probs=105.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+++|.+|||||||+|+|++.++ .+++..+++|++. ..+.+++ .+.+|||||+.......+ .+ ......
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~-a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve---~~--gi~~~~ 298 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDR-AIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVE---KI--GVERSR 298 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHB-SCCSCCTTCCHHHHHHEEEETTEEEEECC-------------------------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCc-ccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHH---HH--HHHHHh
Confidence 3899999999999999999999754 5677788888754 3445555 799999999854221111 10 112223
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
.....+|++++|+|++++.+..+.++...+. .+|+++|+||+|+....... . +. .+....++++
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~------~-------~~-~~~~~~~~i~ 362 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLIT------S-------LE-YPENITQIVH 362 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGST------T-------CC-CCTTCCCEEE
T ss_pred hhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhH------H-------HH-HhccCCcEEE
Confidence 3455678899999999988887766666654 47999999999998654311 0 00 1112478999
Q ss_pred eecCCCCCHHHHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+||++|+|+++++++|.+.+..
T Consensus 363 iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 363 TAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp EBTTTTBSHHHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999987753
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-19 Score=161.46 Aligned_cols=160 Identities=23% Similarity=0.250 Sum_probs=109.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcc-cCCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYG-YAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~-~~~~~~~~~~~~~~~~~~~ 201 (308)
.+|+|+|++|||||||+|+|++.+. ..++..+++|+.. ..+..++ ++.++||||+. ... ..+.. .+....
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~-~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~--~~l~~---~~~~~~ 82 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKI-SITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK--RAINR---LMNKAA 82 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSE-EECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH--HHHHH---HHTCCT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc-cccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccch--hhHHH---HHHHHH
Confidence 3799999999999999999999754 5567777777632 2334444 79999999975 110 00000 011111
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
......+|++++|+|++. .+..+..+...+...+.|+++|+||+|+... ...+....+.+.+.++ ...++
T Consensus 83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~--------~~~~~~~l~~l~~~~~-~~~~i 152 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQE--------KADLLPHLQFLASQMN-FLDIV 152 (301)
T ss_dssp TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCC--------HHHHHHHHHHHHTTSC-CSEEE
T ss_pred HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCcc--------HHHHHHHHHHHHHhcC-cCceE
Confidence 123456688999999987 7766666666666678999999999998752 1223333333433322 23699
Q ss_pred EeecCCCCCHHHHHHHHHHH
Q 021750 282 MTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~ 301 (308)
++||++|.|++++++++.+.
T Consensus 153 ~iSA~~g~~v~~l~~~i~~~ 172 (301)
T 1ega_A 153 PISAETGLNVDTIAAIVRKH 172 (301)
T ss_dssp ECCTTTTTTHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998764
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=159.70 Aligned_cols=172 Identities=16% Similarity=0.117 Sum_probs=106.0
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCC-ceEE--EEEEEeCC-CEEEecCCCcccCCCchhhhhchHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPG-KTQC--INHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKF 197 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~-~t~~--~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~ 197 (308)
....++|+|+|.+|||||||+|+|++... ......++ +|.. ...+.+++ ++.+|||||+.......+ .....+
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~--~~~~~i 95 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQA-FESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCE--ALYKEV 95 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCC-SCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCH--HHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHH--HHHHHH
Confidence 34567999999999999999999998752 12222232 3332 23444555 799999999875432211 011112
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccC-----CCCEEEEee-cCCCCCcccCCCCCchh--------hH
Q 021750 198 TKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQN-----QIPMTLVFT-KCDKRKKKKNGGKRPEE--------NL 263 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~-----~~pvivV~N-K~Dl~~~~~~~~~~~~~--------~~ 263 (308)
.+.+......+|++++|+|++. ....+..+..++... ..|.++|+| |+|+.... ... .+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~------~~~~i~~~~~~~~ 168 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS------LMDYMHDSDNKAL 168 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC------HHHHHHHCCCHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc------HHHHHHhcchHHH
Confidence 2222234456678999999985 454444444555432 567777777 99997431 111 12
Q ss_pred HHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 264 NDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+.+.+.++..+....+ +++||++|.|++++|++|.+.+..
T Consensus 169 ~~~~~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 169 SKLVAACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHHHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHh
Confidence 2343333322110112 889999999999999999998865
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.1e-20 Score=152.77 Aligned_cols=157 Identities=17% Similarity=0.221 Sum_probs=94.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCC--cceeccCCCCceEEEEEEEe------CCCEEEecCCCcccCCCchhhhhchHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRK--KLALTSKTPGKTQCINHFRI------NDSWYLVDLPGYGYAAAPRELRTDWDKF 197 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~--~~~~~~~~~~~t~~~~~~~~------~~~~~liDtpG~~~~~~~~~~~~~~~~~ 197 (308)
+||+++|.+|||||||+++|++.. +.....++.|.......+.. ...+.+|||+|.. ++..+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~ 72 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE----------EFYST 72 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHH----------HHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH----------HHHHh
Confidence 599999999999999999999853 21222233333322222221 1268899999953 33334
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCC-ChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH
Q 021750 198 TKDYFLNRSTLVSVFLLIDASIPA-KPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ 271 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~viD~~~~~-~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 271 (308)
...|+..++ ++++|+|.+++. +... +..|+. ..+.|+++|+||+|+.+... .........+.+.
T Consensus 73 ~~~~~~~~~---~~i~v~d~~~~~~s~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~ 142 (184)
T 2zej_A 73 HPHFMTQRA---LYLAVYDLSKGQAEVDA--MKPWLFNIKARASSSPVILVGTHLDVSDEKQ-----RKACMSKITKELL 142 (184)
T ss_dssp SHHHHHHSE---EEEEEEEGGGCHHHHHT--HHHHHHHHHHHCTTCEEEEEEECGGGCCHHH-----HHHHHHHHHHHTT
T ss_pred hHHHccCCc---EEEEEEeCCcchhHHHH--HHHHHHHHHhhCCCCcEEEEEECCCcccchh-----hHHHHHHHHHHHH
Confidence 555665543 478899998763 2222 233332 14799999999999975321 1111122222222
Q ss_pred hhhcCCCC----EEEeecCCCC-CHHHHHHHHHHHHHH
Q 021750 272 GFFQTAPP----WIMTSSVTNQ-GRDEILLHMAQLRNY 304 (308)
Q Consensus 272 ~~~~~~~~----~~~vSA~~g~-gi~el~~~i~~~~~~ 304 (308)
... ..+ ++++||++|. |++++++.|.+.+.+
T Consensus 143 ~~~--~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 143 NKR--GFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp TCT--TSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred Hhc--CCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 211 244 9999999997 999999999887653
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-19 Score=170.87 Aligned_cols=161 Identities=22% Similarity=0.241 Sum_probs=109.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcce-----eccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLA-----LTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDK 196 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~-----~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~ 196 (308)
.++|+++|.+|+|||||+++|++..... .....+|+|.+. ..+.+++ .+.+|||||+. .
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~----------~--- 85 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA----------D--- 85 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH----------H---
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH----------H---
Confidence 4699999999999999999999865111 123344555543 2344455 79999999953 2
Q ss_pred HHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh-hc
Q 021750 197 FTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF-FQ 275 (308)
Q Consensus 197 ~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 275 (308)
+.+........+|++++|+|++++...+..+...++...++|+++|+||+|+.+... .++..+++.+.+... ..
T Consensus 86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~-----~~~~~~~l~~~l~~~~~~ 160 (482)
T 1wb1_A 86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEE-----IKRTEMIMKSILQSTHNL 160 (482)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHH-----HHHHHHHHHHHHHHSSSG
T ss_pred HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchh-----HHHHHHHHHHHHhhhccc
Confidence 444444555667889999999988777766666677777899999999999985321 222233444444332 11
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
...+++++||++|+|+++|+++|.+.+.
T Consensus 161 ~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 161 KNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp GGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 2478999999999999999999998765
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-19 Score=167.31 Aligned_cols=163 Identities=15% Similarity=0.196 Sum_probs=103.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcc---eeccCC---------C-CceE-------EEEE-EEeCCCEEEecCCC
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKL---ALTSKT---------P-GKTQ-------CINH-FRINDSWYLVDLPG 180 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~---~~~~~~---------~-~~t~-------~~~~-~~~~~~~~liDtpG 180 (308)
....++|+++|.+|+|||||+|+|++.... ...... + +.+. .... ......+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 345679999999999999999999984211 000000 0 0000 0000 00013688999999
Q ss_pred cccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-ChhHHHHHHHhcc-CCCCEEEEeecCCCCCcccCCCCC
Q 021750 181 YGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-KPIDLEYASWLGQ-NQIPMTLVFTKCDKRKKKKNGGKR 258 (308)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~-~~~~~~l~~~~~~-~~~pvivV~NK~Dl~~~~~~~~~~ 258 (308)
.. .|...+.. ....+|++++|+|++.+. ..+..+...++.. ..+|+++|+||+|+.+..+
T Consensus 85 h~----------~~~~~~~~---~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~----- 146 (403)
T 3sjy_A 85 HE----------VLMATMLS---GAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEE----- 146 (403)
T ss_dssp CG----------GGHHHHHH---HHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHH-----
T ss_pred cH----------HHHHHHHH---HHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHH-----
Confidence 53 33333333 344567799999999876 4444444444443 2358999999999986432
Q ss_pred chhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 259 PEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+..+++.+.+........+++++||++|+|+++|+++|.+.+
T Consensus 147 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 147 ALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 22334444444443333457999999999999999999998754
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.6e-19 Score=166.68 Aligned_cols=158 Identities=16% Similarity=0.204 Sum_probs=101.0
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcc-----------------------e------eccCCCCceEEEEE--EEe
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKL-----------------------A------LTSKTPGKTQCINH--FRI 169 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~-----------------------~------~~~~~~~~t~~~~~--~~~ 169 (308)
+.....+|+++|.+|+|||||+++|++.... + .....+|+|.+... +..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 3455679999999999999999999654210 0 01123567776543 333
Q ss_pred CC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCC-------hhHHHHHHHhccCCCC-EE
Q 021750 170 ND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAK-------PIDLEYASWLGQNQIP-MT 240 (308)
Q Consensus 170 ~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~-------~~~~~l~~~~~~~~~p-vi 240 (308)
++ .+.+|||||+. +|...+.. ....+|++++|+|++.+.. .+..+....+...++| ++
T Consensus 93 ~~~~~~iiDTPGh~----------~f~~~~~~---~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iI 159 (439)
T 3j2k_7 93 EKKHFTILDAPGHK----------SFVPNMIG---GASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLI 159 (439)
T ss_pred CCeEEEEEECCChH----------HHHHHHHh---hHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEE
Confidence 33 79999999964 33333333 3445677999999998754 2444445555556788 99
Q ss_pred EEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh---c----CCCCEEEeecCCCCCHHHHHH
Q 021750 241 LVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF---Q----TAPPWIMTSSVTNQGRDEILL 296 (308)
Q Consensus 241 vV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~vSA~~g~gi~el~~ 296 (308)
+|+||+|+..... ..+..+++.+.+..++ + ...+++++||++|+|++++.+
T Consensus 160 vviNK~Dl~~~~~-----~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 160 VLINKMDDPTVNW-----SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EEeecCCCcccch-----HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 9999999964221 1222222222222211 1 146899999999999999655
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-20 Score=174.85 Aligned_cols=163 Identities=21% Similarity=0.306 Sum_probs=105.1
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC--CEEEecCCCcccCCCchhhhhch
Q 021750 119 DCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND--SWYLVDLPGYGYAAAPRELRTDW 194 (308)
Q Consensus 119 ~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~ 194 (308)
..+....++|+++|.+|+|||||+|+|++..+ ...+..+++|... ..+.+.+ .+.+|||||+.+...... ..+
T Consensus 28 ~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~-~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~--~~~ 104 (423)
T 3qq5_A 28 LPDAGFRRYIVVAGRRNVGKSSFMNALVGQNV-SIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGR--LRV 104 (423)
T ss_dssp C---CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCC--CCH
T ss_pred cCCCCCCEEEEEECCCCCCHHHHHHHHHcCCC-CccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhH--HHH
Confidence 34556678999999999999999999998754 4456677776543 3344443 799999999865322111 011
Q ss_pred HHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 195 DKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 195 ~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
. ....++. .+|++++|+|+ .......++..++.+.++|+++|+||+|+..... . +..+.+.+.+
T Consensus 105 ~-~~~~~l~---~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~------~----~~~~~l~~~~ 168 (423)
T 3qq5_A 105 E-KARRVFY---RADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKA------E----ELKGLYESRY 168 (423)
T ss_dssp H-HHHHHHT---SCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCC------T----HHHHHSSCCT
T ss_pred H-HHHHHHh---cCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccH------H----HHHHHHHHHc
Confidence 1 2334443 35569999999 4555566677777778999999999999987542 1 2222222222
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+++++||++|+|+++++++|.+.+
T Consensus 169 --g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 169 --EAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp --TCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred --CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 37899999999999999999998876
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.3e-19 Score=148.42 Aligned_cols=157 Identities=22% Similarity=0.278 Sum_probs=105.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+++|++|||||||+++|++..+.....++.+.......+.+++ .+.+|||||... +..+...+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~----------~~~~~~~~ 74 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER----------YRRITSAY 74 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGG----------TTCCCHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchh----------hhhhhHHH
Confidence 46999999999999999999999865444455556655556666666 467899999542 11233344
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+.. .+++++|+|.....+..+. .+...+ ...+.|+++|+||+|+.+... +..+....+.... .
T Consensus 75 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----~~~~~a~~l~~~~------~ 141 (199)
T 2f9l_A 75 YRG---AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA----VPTDEARAFAEKN------N 141 (199)
T ss_dssp HTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----SCHHHHHHHHHHT------T
T ss_pred Hhc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccC----cCHHHHHHHHHHc------C
Confidence 443 3458999999876544332 111111 125789999999999976433 1233333333322 3
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+.++++||+++.|+++++++|.+.+..
T Consensus 142 ~~~~d~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 142 LSFIETSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999999987754
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-18 Score=161.49 Aligned_cols=163 Identities=21% Similarity=0.233 Sum_probs=102.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEEE----EE---------Ee-------------CCCEE
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCIN----HF---------RI-------------NDSWY 174 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~~----~~---------~~-------------~~~~~ 174 (308)
+...++|+++|.+++|||||+++|++..... .....+|.|.... .+ .. ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 3456799999999999999999999643111 1112233333211 11 00 13589
Q ss_pred EecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-ChhHHHHHHHhccCC-CCEEEEeecCCCCCcc
Q 021750 175 LVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-KPIDLEYASWLGQNQ-IPMTLVFTKCDKRKKK 252 (308)
Q Consensus 175 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~-~~~~~~l~~~~~~~~-~pvivV~NK~Dl~~~~ 252 (308)
+|||||+. .+.+.++.....+|++++|+|++++. ..+..+....+...+ .|+++|+||+|+.+..
T Consensus 85 iiDtPGh~-------------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 85 FVDSPGHE-------------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp EEECSSHH-------------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT
T ss_pred EEECCCHH-------------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH
Confidence 99999952 25566667777889999999999875 444444333333333 5899999999998643
Q ss_pred cCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 253 KNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
. ..+..+++.+.+........+++++||++|+|+++|+++|.+.+
T Consensus 152 ~-----~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 152 Q-----AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp T-----TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred H-----HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 2 22344555555554333458999999999999999999998754
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=151.27 Aligned_cols=175 Identities=16% Similarity=0.188 Sum_probs=101.2
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC-CEEEecCCCcccCCC-chhhhhchH
Q 021750 120 CPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND-SWYLVDLPGYGYAAA-PRELRTDWD 195 (308)
Q Consensus 120 ~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~-~~~~~~~~~ 195 (308)
.+....++|+|+|.+|||||||+|+|++........+..++|.. ...+.+++ .+.+|||||+.+... ..+.. .
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~---~ 100 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETS---K 100 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHH---H
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHH---H
Confidence 34456689999999999999999999997642211121134433 23445555 799999999876432 22211 2
Q ss_pred HHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCc--hhhHHHHHH
Q 021750 196 KFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRP--EENLNDFQE 268 (308)
Q Consensus 196 ~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~--~~~~~~~~~ 268 (308)
.+.+.+......++++++|+|++.... .+.....++. ...+|+++|+||+|+.........+. .+.++.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 101 EIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence 344444455566788999999975443 3333333332 23469999999999976543110000 123344433
Q ss_pred HHHhhhcCCCCEEEeecCCC-----CCHHHHHHHHHHHHHH
Q 021750 269 LIQGFFQTAPPWIMTSSVTN-----QGRDEILLHMAQLRNY 304 (308)
Q Consensus 269 ~~~~~~~~~~~~~~vSA~~g-----~gi~el~~~i~~~~~~ 304 (308)
.++ ..++.+++..+ .|+.+|++.+.+++.+
T Consensus 180 ~~~------~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 180 IFG------DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHS------SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcC------CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 332 46777777654 7899999999888754
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.1e-18 Score=156.35 Aligned_cols=164 Identities=20% Similarity=0.255 Sum_probs=105.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
.+.++|+++|.+|||||||+|+|++... .....+++|... ..+..++ .+.+|||||+.+.... +.. . +..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~-~---~~~ 237 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP--EIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPIS-ERN-E---IEK 237 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC--EEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCST-TSC-H---HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchh-hhh-H---HHH
Confidence 4567999999999999999999999752 344455555433 3333333 6899999998653211 100 0 111
Q ss_pred HHH-HhcCCccEEEEEEeCCCCC--ChhH-HHHHHHhcc--CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 200 DYF-LNRSTLVSVFLLIDASIPA--KPID-LEYASWLGQ--NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 200 ~~~-~~~~~~~~vl~viD~~~~~--~~~~-~~l~~~~~~--~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
..+ .....++++++|+|++... +... ..+...+.. .++|+++|+||+|+.... .+++..+.+..
T Consensus 238 ~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~---------~~~~~~~~~~~- 307 (357)
T 2e87_A 238 QAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEE---------NIKRLEKFVKE- 307 (357)
T ss_dssp HHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHH---------HHHHHHHHHHH-
T ss_pred HHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChH---------HHHHHHHHHHh-
Confidence 111 1122356799999988754 3332 122222221 289999999999997532 13333333322
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
...+++++||++|+|+++++++|.+.+...
T Consensus 308 --~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 308 --KGLNPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp --TTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred --cCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 247899999999999999999999988654
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-19 Score=163.19 Aligned_cols=161 Identities=18% Similarity=0.132 Sum_probs=102.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||++++++..+.....++.+... ...+..++ .+.+|||||... +...+..
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~ 222 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLED----------YDRLRPL 222 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGG----------GTTTGGG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchh----------hhHHHHH
Confidence 346999999999999999999998754332222222111 22334444 466999999642 2223333
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHH--HHHHhcc--CCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHHH
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLE--YASWLGQ--NQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQE 268 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~~--~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~~ 268 (308)
++. .++++++|+|++++.+..+.. +...+.. .++|+++|+||+|+..... ....+..+....+.+
T Consensus 223 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 299 (332)
T 2wkq_A 223 SYP---QTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 299 (332)
T ss_dssp GCT---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred hcc---CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHH
Confidence 333 345699999999866554431 2222222 3899999999999975321 001123344444444
Q ss_pred HHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 269 LIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 269 ~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..+ ..+++++||++|+|++++|++|.+.+-
T Consensus 300 ~~~-----~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 300 EIG-----AVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HTT-----CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HcC-----CcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 332 238999999999999999999988653
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.7e-19 Score=158.82 Aligned_cols=159 Identities=19% Similarity=0.198 Sum_probs=100.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC--CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND--SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.||+++|.+|||||||+++|++... ...+..+++|... ..+.+++ .+.+|||||.... ....+...+..+
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~-~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~~~~~~~ 77 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYS-AFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-----MENYFTKQKDHI 77 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCC-TGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-----HHHHHTTTHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH-----hhhhhhhHHHHH
Confidence 5999999999999999999998732 3445555555543 3333333 7899999996321 000002244455
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHH-HHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCch----hhHHHHHHHHH
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLE-YASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPE----ENLNDFQELIQ 271 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~-l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~----~~~~~~~~~~~ 271 (308)
+.. ++++++|+|+++..+..+.. +..++. ..++|+++|+||+|+.+... .. ...++..+...
T Consensus 78 ~~~---ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~-----r~~~~~v~~~~~~~~~~ 149 (307)
T 3r7w_A 78 FQM---VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDK-----REELFQIMMKNLSETSS 149 (307)
T ss_dssp HTT---CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHH-----HHHHHHHHHHHHHHHHH
T ss_pred hcc---CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhh-----hhHHHHHHHHHHHHHHH
Confidence 543 45699999999887666542 233332 24799999999999986221 11 01122222222
Q ss_pred hhhcC-CCCEEEeecCCCCCHHHHHHHHHH
Q 021750 272 GFFQT-APPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 272 ~~~~~-~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
.++. .++++++||++ .|+.++|..+.+
T Consensus 150 -~~g~~~~~~~~tSa~~-~~i~e~~~~iv~ 177 (307)
T 3r7w_A 150 -EFGFPNLIGFPTSIWD-ESLYKAWSQIVC 177 (307)
T ss_dssp -TTTCCSCEEEECCTTS-SHHHHHHHHHHH
T ss_pred -HcCCCCeEEEEeeecC-ChHHHHHHHHHH
Confidence 2221 37899999999 889888887765
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-18 Score=161.36 Aligned_cols=163 Identities=21% Similarity=0.243 Sum_probs=107.5
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEE----EEEEe----------------------CCCEE
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCI----NHFRI----------------------NDSWY 174 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~----~~~~~----------------------~~~~~ 174 (308)
+...++|+++|.+|+|||||+++|++..... .....+|.|... ..+.. ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 3445799999999999999999999642111 111223333321 11100 13589
Q ss_pred EecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-ChhHHHHHHHhcc-CCCCEEEEeecCCCCCcc
Q 021750 175 LVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-KPIDLEYASWLGQ-NQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 175 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~-~~~~~~l~~~~~~-~~~pvivV~NK~Dl~~~~ 252 (308)
+|||||+. .+...++.....+|++++|+|++++. ..+..+....+.. ...|+++|+||+|+.+..
T Consensus 87 iiDtPGh~-------------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 87 FIDAPGHE-------------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE 153 (410)
T ss_dssp EEECSSHH-------------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH
T ss_pred EEECCChH-------------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHH
Confidence 99999953 25566667777788899999999875 4444333333332 235899999999998643
Q ss_pred cCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 253 KNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
. ..+..+++.+.+........+++++||++|+|+++|+++|.+.+
T Consensus 154 ~-----~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 154 K-----ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp H-----HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred H-----HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 1 22334445555443333457999999999999999999998754
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.77 E-value=7.7e-18 Score=155.87 Aligned_cols=171 Identities=20% Similarity=0.220 Sum_probs=101.4
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
+.+.+.|+|+|.+|||||||+|+|++... .+...+++|.+ ...+.+++ .+.++||||+..... ..+...|...
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~~~--~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp-~~lve~f~~t- 251 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQ--KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIP-PQIVDAFFVT- 251 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEEEEEECCCBCSSCC-GGGHHHHHHH-
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCCCc--cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCC-HHHHHHHHHH-
Confidence 34566699999999999999999999753 34556666644 34555655 789999999865322 1211223222
Q ss_pred HHHHHhcCCccEEEEEEeCCCCC--ChhHH----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPA--KPIDL----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~--~~~~~----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
+.....+|++++|+|++++. ..... ++...+...++|+++|+||+|+.+.. .........+....
T Consensus 252 ---l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~------~~~~~~~~~~l~~~ 322 (364)
T 2qtf_A 252 ---LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD------LYKKLDLVEKLSKE 322 (364)
T ss_dssp ---HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC------HHHHHHHHHHHHHH
T ss_pred ---HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch------HHHHHHHHHHHHHH
Confidence 23345567799999998764 12111 22222333678999999999997532 11111111111111
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
......+++++||++|+|+++++++|.+.+...
T Consensus 323 l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 323 LYSPIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp HCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 101124689999999999999999999987654
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-18 Score=144.72 Aligned_cols=155 Identities=22% Similarity=0.272 Sum_probs=105.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.++|+|+|++|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||+|..... .++..+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~----------~~~~~~ 98 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYR----------AITSAY 98 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSS----------CCCHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchh----------hhhHHH
Confidence 46999999999999999999999865444555666655556666666 35679999974311 133445
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHH-HHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLE-YASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~-l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+... +++++|+|..+..+..+.. +...+ ...+.|+++|+||+|+.+... +..+....+.... .
T Consensus 99 ~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----~~~~~a~~l~~~~------~ 165 (191)
T 1oix_A 99 YRGA---VGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA----VPTDEARAFAEKN------G 165 (191)
T ss_dssp HTTC---CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----SCHHHHHHHHHHT------T
T ss_pred hhcC---CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc----cCHHHHHHHHHHc------C
Confidence 4433 3488999988654433321 11111 134789999999999976432 1233333333322 3
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..++++||+++.|+++++++|.+.+
T Consensus 166 ~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 166 LSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999998754
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-19 Score=162.66 Aligned_cols=169 Identities=21% Similarity=0.241 Sum_probs=109.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcce----eccCCCCce----------------------EE-------------
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLA----LTSKTPGKT----------------------QC------------- 163 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~----~~~~~~~~t----------------------~~------------- 163 (308)
...++|+++|.+|||||||+|+|++.++.+ .++..|+.+ +.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 345799999999999999999999976532 333344411 11
Q ss_pred -------------EEEEEe-CCCEEEecCCCcccCCC---chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHH
Q 021750 164 -------------INHFRI-NDSWYLVDLPGYGYAAA---PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL 226 (308)
Q Consensus 164 -------------~~~~~~-~~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~ 226 (308)
...+.. ...+++|||||+..... ...+...+..+...|+.... +++++|+|++......+.
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~iiL~v~~a~~~~~~~~~ 186 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKEN--CLILAVSPANSDLANSDA 186 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTT--EEEEEEEETTSCGGGCHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCC--eEEEEEecCCCccchhHH
Confidence 000111 23799999999875321 22222356667778776544 357888888765554443
Q ss_pred -HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc---CCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 227 -EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ---TAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 227 -~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+.+.+...+.|+++|+||+|+.+.... ...+.+ ...+. ...+++++||+++.|++++++++.+.-
T Consensus 187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~--------~~~~~~--~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e~ 256 (353)
T 2x2e_A 187 LKVAKEVDPQGQRTIGVITKLDLMDEGTD--------ARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 256 (353)
T ss_dssp HHHHHHHCTTCTTEEEEEECGGGSCTTCC--------CHHHHT--TCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHhCcCCCceEEEeccccccCcchh--------HHHHHh--CCcccccCCceEEEeCCcccccccccHHHHHHHHH
Confidence 3666776778999999999999864320 111111 11111 124678899999999999999998744
Q ss_pred H
Q 021750 303 N 303 (308)
Q Consensus 303 ~ 303 (308)
.
T Consensus 257 ~ 257 (353)
T 2x2e_A 257 K 257 (353)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-18 Score=165.83 Aligned_cols=115 Identities=21% Similarity=0.304 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcc--------------eec------cCCCCceEE--EEEEEeCC-CEEEecCCC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKL--------------ALT------SKTPGKTQC--INHFRIND-SWYLVDLPG 180 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~--------------~~~------~~~~~~t~~--~~~~~~~~-~~~liDtpG 180 (308)
..++|+|+|.+|||||||+++|+..... ... ...+|.|.. ...+.+++ .+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 3469999999999999999999721100 000 001233322 23444554 799999999
Q ss_pred cccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 181 YGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
+.+ |...+..++ ..+|++++|+|++.+.......+...+...++|+++|+||+|+...
T Consensus 92 ~~d----------f~~~~~~~l---~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HAD----------FTEDTYRTL---TAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp STT----------CCHHHHHGG---GGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred chh----------HHHHHHHHH---HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 753 222333443 3456799999999998888887777787889999999999999753
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-18 Score=158.25 Aligned_cols=148 Identities=16% Similarity=0.108 Sum_probs=100.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
+|+++|.+|+|||||+++|+.. |.|.+ ...+..++ .+.+|||||+.+ |...+..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~----------giTi~~~~~~~~~~~~~i~iiDtPGh~~----------f~~~~~~--- 79 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK----------GTSSDITMYNNDKEGRNMVFVDAHSYPK----------TLKSLIT--- 79 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE----------EEESSSEEEEECSSSSEEEEEECTTTTT----------CHHHHHH---
T ss_pred EEEEECCCCCCHHHHHHHHHhC----------CEEEEeeEEEEecCCeEEEEEECCChHH----------HHHHHHH---
Confidence 8999999999999999999821 12221 12233333 799999999742 2222223
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCE-EEEee-cCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPM-TLVFT-KCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pv-ivV~N-K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
....+|++++|+| +.+...+..+....+...++|. ++|+| |+|+ +... ..+..+++.+.+........+++
T Consensus 80 ~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~-----~~~~~~~i~~~l~~~~~~~~~ii 152 (370)
T 2elf_A 80 ALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHA-----IDELKAKLKVITSGTVLQDWECI 152 (370)
T ss_dssp HHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHH-----HHHHHHHHHHHTTTSTTTTCEEE
T ss_pred HHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHH-----HHHHHHHHHHHHHhcCCCceEEE
Confidence 3345667999999 7776666666666666678888 99999 9999 4321 11222333333332211347899
Q ss_pred E--eecCC---CCCHHHHHHHHHHHHHH
Q 021750 282 M--TSSVT---NQGRDEILLHMAQLRNY 304 (308)
Q Consensus 282 ~--vSA~~---g~gi~el~~~i~~~~~~ 304 (308)
+ +||++ ++|+++++++|.+.+..
T Consensus 153 ~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 153 SLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp ECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred ecccccccCcCCCCHHHHHHHHHhhccc
Confidence 9 99999 99999999999988754
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.6e-18 Score=163.26 Aligned_cols=150 Identities=18% Similarity=0.254 Sum_probs=93.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcc-----------------------------eeccCCCCceEEEEE--EEeCC-
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKL-----------------------------ALTSKTPGKTQCINH--FRIND- 171 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~--~~~~~- 171 (308)
...+|+++|.+|+|||||+++|++.... ......+|+|.+... +..++
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 3469999999999999999999864110 011123455554333 33333
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-------ChhHHHHHHHhccCC-CCEEEEe
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-------KPIDLEYASWLGQNQ-IPMTLVF 243 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~-------~~~~~~l~~~~~~~~-~pvivV~ 243 (308)
.+.+|||||+. +|...+..++ ..+|++++|+|++.+. ..+..+...++...+ .|+++|+
T Consensus 112 ~~~iiDTPG~~----------~f~~~~~~~~---~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvvi 178 (483)
T 3p26_A 112 NFTIVDAPGHR----------DFVPNAIMGI---SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAM 178 (483)
T ss_dssp EEEEECCCCCG----------GGHHHHHHHH---TTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred eEEEEECCCcH----------HHHHHHHHhh---hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEE
Confidence 79999999974 3444444444 4456799999999863 234444455555445 5699999
Q ss_pred ecCCCCCcccCCCCCchhhHHHHHHHHHhhh---c---CCCCEEEeecCCCCCHHH
Q 021750 244 TKCDKRKKKKNGGKRPEENLNDFQELIQGFF---Q---TAPPWIMTSSVTNQGRDE 293 (308)
Q Consensus 244 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~vSA~~g~gi~e 293 (308)
||+|+.+.. ....+++.+.+...+ + ...+++++||++|+|+++
T Consensus 179 NK~Dl~~~~-------~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 179 NKMDNVDWS-------QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp ECGGGGTTC-------HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred ECcCcccch-------HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 999998632 122222222222211 1 146899999999999985
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-19 Score=172.47 Aligned_cols=161 Identities=17% Similarity=0.253 Sum_probs=109.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEE--EEe--CCCEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINH--FRI--NDSWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~--~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
..++|+++|.+|+|||||+++|.+..+. ....+++|.+... +.. +..+.+|||||+.... .++.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~--~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~----------~~~~ 70 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVA--AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS----------AMRA 70 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHH--HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT----------TSBB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--cccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH----------HHHH
Confidence 3568999999999999999999986532 2345566554322 222 2379999999964311 1222
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCC
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPP 279 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (308)
. ....+|++++|+|++++...+..+...++...++|+++|+||+|+.+..... ....+..+.. ....+....+
T Consensus 71 ~---~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~---v~~~l~~~~~-~~e~~~~~~~ 143 (537)
T 3izy_P 71 R---GTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEK---VKKELLAYDV-VCEDYGGDVQ 143 (537)
T ss_dssp S---SSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCS---SSSHHHHTTS-CCCCSSSSEE
T ss_pred H---HHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHH---HHHHHHhhhh-hHHhcCCCce
Confidence 2 2344566999999999888888877777777899999999999997543211 1111211100 0011122358
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHH
Q 021750 280 WIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 280 ~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++++||++|+|+++++++|..++.
T Consensus 144 iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 144 AVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp ECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCchhHHHHHHHhhh
Confidence 999999999999999999988764
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.7e-19 Score=170.04 Aligned_cols=157 Identities=15% Similarity=0.162 Sum_probs=92.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE------EEEe-----CCCEEEecCCCcccCCCchhhh
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN------HFRI-----NDSWYLVDLPGYGYAAAPRELR 191 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~------~~~~-----~~~~~liDtpG~~~~~~~~~~~ 191 (308)
...+||+++|.+|||||||+++|++..+.....++.+.+.... .+.. ...+.+|||||...
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~-------- 110 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEI-------- 110 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCT--------
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHH--------
Confidence 4457999999999999999999999865444444444443321 1111 12699999999532
Q ss_pred hchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc--CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHH
Q 021750 192 TDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ--NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQEL 269 (308)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~--~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 269 (308)
+..+...|+.. .+++++|+|+++... ...+...+.. .++|+++|+||+|+.+..+ +.. +.+.+.
T Consensus 111 --~~~~~~~~l~~---~d~ii~V~D~s~~~~--~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~----v~~---~~~~~~ 176 (535)
T 3dpu_A 111 --MHASHQFFMTR---SSVYMLLLDSRTDSN--KHYWLRHIEKYGGKSPVIVVMNKIDENPSYN----IEQ---KKINER 176 (535)
T ss_dssp --TTTTCHHHHHS---SEEEEEEECGGGGGG--HHHHHHHHHHHSSSCCEEEEECCTTTCTTCC----CCH---HHHHHH
T ss_pred --HHHHHHHHccC---CcEEEEEEeCCCchh--HHHHHHHHHHhCCCCCEEEEEECCCcccccc----cCH---HHHHHH
Confidence 11233344444 456999999986522 1222333332 4699999999999986543 122 223333
Q ss_pred HHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 270 IQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 270 ~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
... ...+++++||++|.|+++++++|.+.+..
T Consensus 177 ~~~---~~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 177 FPA---IENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp CGG---GTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred HHh---cCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 322 13689999999999999999999987653
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.4e-18 Score=147.99 Aligned_cols=86 Identities=23% Similarity=0.250 Sum_probs=57.7
Q ss_pred CccEEEEEEeCCCC--CChhHHH-HHHHh----ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCC
Q 021750 207 TLVSVFLLIDASIP--AKPIDLE-YASWL----GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPP 279 (308)
Q Consensus 207 ~~~~vl~viD~~~~--~~~~~~~-l~~~~----~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (308)
.++++++|+|++++ .+..... +...+ ...++|+++|+||+|+..... +++..+..... ...+
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~---------v~~~~~~~~~~--~~~~ 230 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY---------IRDAHTFALSK--KNLQ 230 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH---------HHHHHHHHHTS--SSCC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH---------HHHHHHHHHhc--CCCe
Confidence 35779999999987 6654431 11111 235799999999999965321 23333332221 2478
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHH
Q 021750 280 WIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 280 ~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++++||++|.|++++|++|.+.+.
T Consensus 231 ~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 231 VVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 999999999999999999988764
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=4.3e-18 Score=159.95 Aligned_cols=161 Identities=17% Similarity=0.173 Sum_probs=104.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC--------Cccee-cc------CCCCceEEEEE--EEeC-CCEEEecCCCcccCC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRR--------KKLAL-TS------KTPGKTQCINH--FRIN-DSWYLVDLPGYGYAA 185 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~--------~~~~~-~~------~~~~~t~~~~~--~~~~-~~~~liDtpG~~~~~ 185 (308)
..++|+++|.+|+|||||+++|++. .+... .. ...|.|..... +..+ ..+.+|||||+.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~--- 86 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA--- 86 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG---
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH---
Confidence 4469999999999999999999973 11110 00 12344544333 3333 379999999964
Q ss_pred CchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhHH
Q 021750 186 APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENLN 264 (308)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~~ 264 (308)
+|...+..++. .+|++++|+|++++...+..+...++...++| +++|+||+|+....+ ..+...+
T Consensus 87 -------~f~~~~~~~~~---~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~----~~~~~~~ 152 (405)
T 2c78_A 87 -------DYIKNMITGAA---QMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPE----LLDLVEM 152 (405)
T ss_dssp -------GGHHHHHHHHT---TCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHH----HHHHHHH
T ss_pred -------HHHHHHHHHHH---HCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHH----HHHHHHH
Confidence 33334444443 45569999999988877776666666667889 889999999985211 0111122
Q ss_pred HHHHHHHhhhc--CCCCEEEeecCCCCC------------------HHHHHHHHHHH
Q 021750 265 DFQELIQGFFQ--TAPPWIMTSSVTNQG------------------RDEILLHMAQL 301 (308)
Q Consensus 265 ~~~~~~~~~~~--~~~~~~~vSA~~g~g------------------i~el~~~i~~~ 301 (308)
++.+.+..... ...+++++||++|.| +++|+++|.+.
T Consensus 153 ~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 209 (405)
T 2c78_A 153 EVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEY 209 (405)
T ss_dssp HHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhh
Confidence 33333332211 237899999999987 67777777654
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=151.38 Aligned_cols=169 Identities=19% Similarity=0.239 Sum_probs=100.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcc----eeccCCCC---ceEE-------------------------------
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKL----ALTSKTPG---KTQC------------------------------- 163 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~----~~~~~~~~---~t~~------------------------------- 163 (308)
....++|+|+|.+|||||||+|+|++..+. ..++..|+ ++..
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 345679999999999999999999997642 22333442 1111
Q ss_pred -------------------EEE---EEeC-CCEEEecCCCcccCCC---chhhhhchHHHHHHHHHhcCCccEEEEEEeC
Q 021750 164 -------------------INH---FRIN-DSWYLVDLPGYGYAAA---PRELRTDWDKFTKDYFLNRSTLVSVFLLIDA 217 (308)
Q Consensus 164 -------------------~~~---~~~~-~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~ 217 (308)
... +..+ .++.+|||||+..... ...+...+......|+..+ |++++|+|+
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~iilvvd~ 177 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQ---NAIIVAVTP 177 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHST---TEEEEEEEE
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCC---CeEEEEEEe
Confidence 000 1112 3799999999864211 1122234555666666554 458899987
Q ss_pred -CCCCChh-HHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecC---C---CC
Q 021750 218 -SIPAKPI-DLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSV---T---NQ 289 (308)
Q Consensus 218 -~~~~~~~-~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~---~---g~ 289 (308)
+...... ...+..++...++|+++|+||+|+..... ...+.+.. ........++++|+. + +.
T Consensus 178 ~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~-------~~~~~~~~---~~~~~~~~~~~v~~~sa~~~~~~~ 247 (315)
T 1jwy_B 178 ANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGT-------DAMEVLTG---RVIPLTLGFIGVINRSQEDIIAKK 247 (315)
T ss_dssp SSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSC-------CCHHHHTT---SSSCCTTCEEECCCCCHHHHSSSC
T ss_pred cCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcch-------HHHHHHhC---CCccCCCCeEEEecCChhhhccCC
Confidence 4443323 34677788778899999999999986432 11222211 111111456666554 4 78
Q ss_pred CHHHHHHHHHHHHH
Q 021750 290 GRDEILLHMAQLRN 303 (308)
Q Consensus 290 gi~el~~~i~~~~~ 303 (308)
|++++++.+.+.+.
T Consensus 248 gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 248 SIRESLKSEILYFK 261 (315)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999887765
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=156.65 Aligned_cols=160 Identities=18% Similarity=0.209 Sum_probs=106.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCC-------ccee-------ccCCCCceEEEEEEEe--C-CCEEEecCCCcccCCCch
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRK-------KLAL-------TSKTPGKTQCINHFRI--N-DSWYLVDLPGYGYAAAPR 188 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~-------~~~~-------~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~ 188 (308)
.+|+++|.+|+|||||+++|++.. +... .....|.|.......+ + ..+.+|||||+.
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~------ 77 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA------ 77 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH------
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH------
Confidence 589999999999999999999731 1000 0113466665443333 3 379999999953
Q ss_pred hhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhHHHHH
Q 021750 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENLNDFQ 267 (308)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~~~~~ 267 (308)
+ +..........+|++++|+|++.+...+..+...++...++| +++|+||+|+.+..+ ..+...+++.
T Consensus 78 ----~---f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~----~~~~~~~~~~ 146 (397)
T 1d2e_A 78 ----D---YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSE----MVELVELEIR 146 (397)
T ss_dssp ----H---HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHH----HHHHHHHHHH
T ss_pred ----H---HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHH----HHHHHHHHHH
Confidence 2 333444555677889999999998777766666666667889 689999999975211 0111122333
Q ss_pred HHHHhhh--cCCCCEEEeecCCCCC----------HHHHHHHHHHHH
Q 021750 268 ELIQGFF--QTAPPWIMTSSVTNQG----------RDEILLHMAQLR 302 (308)
Q Consensus 268 ~~~~~~~--~~~~~~~~vSA~~g~g----------i~el~~~i~~~~ 302 (308)
+.+.... ....+++++||++|.| +++|+++|.+.+
T Consensus 147 ~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 147 ELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp HHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 3333221 1237999999999775 888998887654
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=150.27 Aligned_cols=153 Identities=16% Similarity=0.171 Sum_probs=95.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceec----cCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHH---HHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALT----SKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDK---FTK 199 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~----~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~---~~~ 199 (308)
||+++|.+|||||||++++.+..+ +.. .++.|... ..+...-++.+|||+|..+ |+. ...
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~-~~~~~~~~~Tig~~~--~~v~~~v~LqIWDTAGQEr----------f~~~~l~~~ 67 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQ-PLDTLYLESTSNPSL--EHFSTLIDLAVMELPGQLN----------YFEPSYDSE 67 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCC-SGGGTTCCCCCSCCC--EEECSSSCEEEEECCSCSS----------SCCCSHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCC-CCccceecCeeeeee--EEEccEEEEEEEECCCchh----------ccchhhhhh
Confidence 689999999999999999887532 221 22223222 2222123799999999643 221 356
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
.||+.+. ++++|+|.++........+..|+. ..+.|+++|+||+|+....+ ..+..+.+.....+.+
T Consensus 68 ~yyr~a~---~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~-----R~~~~R~V~~~~~~~l 139 (331)
T 3r7w_B 68 RLFKSVG---ALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDF-----KVDAQRDIMQRTGEEL 139 (331)
T ss_dssp HHHTTCS---EEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHH-----HHHHHHHHHHHHHHTT
T ss_pred hhccCCC---EEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhh-----hhhHHHHhhHHHHHHH
Confidence 7776655 489999999862221123333332 25799999999999985421 0111122333222222
Q ss_pred c------CCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 275 Q------TAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 275 ~------~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
. ..++|+++||++ .||.+.|..+.+.
T Consensus 140 a~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~ 171 (331)
T 3r7w_B 140 LELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQK 171 (331)
T ss_dssp SSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTT
T ss_pred HhhcccccCceEEEeccCC-CcHHHHHHHHHHH
Confidence 2 247899999998 5899999888764
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-17 Score=161.11 Aligned_cols=164 Identities=19% Similarity=0.264 Sum_probs=104.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCC-CceEE--EEEEEe-----------CC--------CEEEecCCCcc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTP-GKTQC--INHFRI-----------ND--------SWYLVDLPGYG 182 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~-~~t~~--~~~~~~-----------~~--------~~~liDtpG~~ 182 (308)
.++|+++|.+|+|||||+++|++... ....+ +.|.. ...+.. ++ .+.+|||||+.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v---~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAV---ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH---SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccC---ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 46999999999999999999997532 11111 22211 111111 01 38999999975
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCC--C---
Q 021750 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGG--K--- 257 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~--~--- 257 (308)
.... ++. +....+|++++|+|++++...+..+...++...++|+++|+||+|+........ .
T Consensus 82 ~F~~----------~~~---r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e 148 (594)
T 1g7s_A 82 AFTT----------LRK---RGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFME 148 (594)
T ss_dssp CCTT----------SBC---SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHH
T ss_pred HHHH----------HHH---HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHH
Confidence 3221 111 223456789999999998877777667777778999999999999975321000 0
Q ss_pred ----Cch---hh----HHHHHHHHHhh-h-----------cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 258 ----RPE---EN----LNDFQELIQGF-F-----------QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 258 ----~~~---~~----~~~~~~~~~~~-~-----------~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
... +. +.++.+.+.+. + ....+++++||++|.|+++|+++|.+.+..
T Consensus 149 ~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 149 TFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 001 11 11222222211 1 123589999999999999999999987754
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-17 Score=161.49 Aligned_cols=157 Identities=17% Similarity=0.240 Sum_probs=98.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCc-c------eec------cCCCCceEEEE--EEEe---CC---CEEEecCCCcc
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKK-L------ALT------SKTPGKTQCIN--HFRI---ND---SWYLVDLPGYG 182 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~-~------~~~------~~~~~~t~~~~--~~~~---~~---~~~liDtpG~~ 182 (308)
...+|+++|.+|+|||||+++|+.... . ..+ ....|.|.... .+.+ ++ .+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 356999999999999999999986311 0 001 11234444321 2222 22 58899999974
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhh
Q 021750 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEEN 262 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~ 262 (308)
+|...+..++..+ |++++|+|++++...+...........++|+++|+||+|+.... ..+.
T Consensus 83 ----------dF~~ev~~~l~~a---D~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~------~~~v 143 (599)
T 3cb4_D 83 ----------DFSYEVSRSLAAC---EGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD------PERV 143 (599)
T ss_dssp ----------GGHHHHHHHHHHC---SEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC------HHHH
T ss_pred ----------HHHHHHHHHHHHC---CEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc------HHHH
Confidence 3444555555554 55899999999888777655555556789999999999998642 2233
Q ss_pred HHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 263 LNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+++.+.++ ....+++++||++|.|+++++++|.+.+
T Consensus 144 ~~ei~~~lg---~~~~~vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 144 AEEIEDIVG---IDATDAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp HHHHHHHTC---CCCTTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred HHHHHHHhC---CCcceEEEeecccCCCchhHHHHHhhcC
Confidence 344433332 1124699999999999999999998764
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.9e-17 Score=161.17 Aligned_cols=169 Identities=16% Similarity=0.249 Sum_probs=109.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCc--------------eEEE------E------------------
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGK--------------TQCI------N------------------ 165 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~--------------t~~~------~------------------ 165 (308)
..++|+|+|.+|+|||||+|+|++.+. ..++..|++ +... .
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~-~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENL-LPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSC-SCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 346999999999999999999998754 344555555 2211 0
Q ss_pred -----------------EEEeC-----CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCCh
Q 021750 166 -----------------HFRIN-----DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP 223 (308)
Q Consensus 166 -----------------~~~~~-----~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~ 223 (308)
.+.+. ..+.+|||||+..... ....+..|+.. +|++++|+|++.+.+.
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~-------~~~~~~~~i~~---aD~vL~Vvda~~~~s~ 216 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA-------RNELSLGYVNN---CHAILFVMRASQPCTL 216 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT-------CHHHHTHHHHS---SSEEEEEEETTSTTCH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh-------HHHHHHHHHHh---CCEEEEEEeCCCccch
Confidence 00000 3689999999864221 12355566654 4569999999988887
Q ss_pred hHHHHH-HHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHH----HH----HHHHhhhc------CCCCEEEeecC--
Q 021750 224 IDLEYA-SWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLND----FQ----ELIQGFFQ------TAPPWIMTSSV-- 286 (308)
Q Consensus 224 ~~~~l~-~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~----~~----~~~~~~~~------~~~~~~~vSA~-- 286 (308)
.+.++. ..+...++|+++|+||+|+......... ..+.++. +. +.+..... ...++++|||+
T Consensus 217 ~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~e-e~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~a 295 (695)
T 2j69_A 217 GERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPD-DVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQA 295 (695)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTT-CHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHH
T ss_pred hHHHHHHHHHHhhCCCEEEEEECcccccccccChh-hHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHH
Confidence 776544 3455568899999999999754311000 0011211 21 22222211 23579999999
Q ss_pred ------------CCCCHHHHHHHHHHHHHH
Q 021750 287 ------------TNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 287 ------------~g~gi~el~~~i~~~~~~ 304 (308)
++.|+++++++|.+.+..
T Consensus 296 l~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 296 LRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred HHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887643
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-17 Score=152.36 Aligned_cols=166 Identities=21% Similarity=0.261 Sum_probs=84.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCccee-ccC------CCCceEEEEEE--EeCC---CEEEecCCCcccCCCchhhhh
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLAL-TSK------TPGKTQCINHF--RIND---SWYLVDLPGYGYAAAPRELRT 192 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~-~~~------~~~~t~~~~~~--~~~~---~~~liDtpG~~~~~~~~~~~~ 192 (308)
.++|+|+|.+|+|||||+|+|++...... ..+ .++.+.....+ ..++ .+.+|||||+.+.....+
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e--- 113 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD--- 113 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC---------------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH---
Confidence 36899999999999999999887542111 100 12222222222 2222 589999999865322111
Q ss_pred chHHHH-------HHHHHhcCCc----------cEEEEEEeC-CCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccC
Q 021750 193 DWDKFT-------KDYFLNRSTL----------VSVFLLIDA-SIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKN 254 (308)
Q Consensus 193 ~~~~~~-------~~~~~~~~~~----------~~vl~viD~-~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~ 254 (308)
.|..+. ..|+....++ ++++|+++. ..+....+.++...+. .++|+|+|+||+|+....
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~-- 190 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLK-- 190 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHH--
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHH--
Confidence 122222 2666655443 367788876 5556666666666664 579999999999998533
Q ss_pred CCCCchhhHHHHHHHHHhhhc-CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 255 GGKRPEENLNDFQELIQGFFQ-TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.+..+.+.+..... .+++++++||+++.| ++.|.++.+.+..
T Consensus 191 -------ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 191 -------ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp -------HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 23333333332222 347899999999999 8887777766543
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=156.06 Aligned_cols=156 Identities=19% Similarity=0.214 Sum_probs=96.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcc---------eeccCC----------------------CCceEEE--EEEEeC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKL---------ALTSKT----------------------PGKTQCI--NHFRIN 170 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~---------~~~~~~----------------------~~~t~~~--~~~~~~ 170 (308)
..++|+++|.+|+|||||+++|++.... ...+.. .|.|.+. ..+..+
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 4469999999999999999999875310 001111 1233322 223333
Q ss_pred C-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCC-CEEEEeecCCC
Q 021750 171 D-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQI-PMTLVFTKCDK 248 (308)
Q Consensus 171 ~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~-pvivV~NK~Dl 248 (308)
+ ++.+|||||+. +|...+..++ ..+|++++|+|++.+...+..+...++...+. |+++|+||+|+
T Consensus 103 ~~~~~iiDtpGh~----------~f~~~~~~~~---~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl 169 (434)
T 1zun_B 103 KRKFIIADTPGHE----------QYTRNMATGA---STCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDL 169 (434)
T ss_dssp SEEEEEEECCCSG----------GGHHHHHHHH---TTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTT
T ss_pred CceEEEEECCChH----------HHHHHHHHHH---hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcC
Confidence 3 69999999964 3433444444 45567999999998877666555555555565 59999999999
Q ss_pred CCcccCCCCCchhhHHHHHHHHHhhh--cCCCCEEEeecCCCCCHHHHH
Q 021750 249 RKKKKNGGKRPEENLNDFQELIQGFF--QTAPPWIMTSSVTNQGRDEIL 295 (308)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vSA~~g~gi~el~ 295 (308)
.+.... ...+..+++.+.+.... ....+++++||++|+|+++++
T Consensus 170 ~~~~~~---~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 170 NGFDER---VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp TTSCHH---HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred CcccHH---HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 853110 01112233333333221 123689999999999998843
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-17 Score=141.06 Aligned_cols=117 Identities=22% Similarity=0.270 Sum_probs=76.1
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCccee-ccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLAL-TSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
....++|+++|.+|||||||+++|++..+... .+..++++... ....+.+|||||.. .++..+..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~----------~~~~~~~~ 74 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHV----------KLRYKLSD 74 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----GGSSCEEEECCCCG----------GGTHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----eCceEEEEECCCcH----------HHHHHHHH
Confidence 34567999999999999999999999764221 12222221111 22379999999974 34446666
Q ss_pred HHHhc-CCccEEEEEEeCC-CCCChhH--HHHHHHhc------cCCCCEEEEeecCCCCCcc
Q 021750 201 YFLNR-STLVSVFLLIDAS-IPAKPID--LEYASWLG------QNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 201 ~~~~~-~~~~~vl~viD~~-~~~~~~~--~~l~~~~~------~~~~pvivV~NK~Dl~~~~ 252 (308)
|+... ..++++++|+|++ +..+... ..+..++. ..++|+++|+||+|+....
T Consensus 75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 66542 2246699999998 5444332 22222222 2589999999999998654
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-18 Score=165.76 Aligned_cols=158 Identities=20% Similarity=0.301 Sum_probs=102.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|+|||||+++|.+.... ....+|+|.... .+.+++ .+.+|||||+..... ++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~--~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~----------~~-- 68 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA--SGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTS----------MR-- 68 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS--BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTT----------SB--
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc--cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHH----------HH--
Confidence 4568999999999999999999875321 222344444332 222333 799999999753211 11
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCE
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW 280 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (308)
.+....+|++++|+|++++...+..+....+...++|+++++||+|+....... ....+.+. ..+.+.+....++
T Consensus 69 -~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~---v~~~l~~~-~~~~~~~~~~~~~ 143 (501)
T 1zo1_I 69 -ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDR---VKNELSQY-GILPEEWGGESQF 143 (501)
T ss_dssp -CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCC---TTCCCCCC-CCCTTCCSSSCEE
T ss_pred -HHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHH---HHHHHHHh-hhhHHHhCCCccE
Confidence 133455677999999998766665555666666789999999999997532111 00000000 0001111223689
Q ss_pred EEeecCCCCCHHHHHHHHHH
Q 021750 281 IMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 281 ~~vSA~~g~gi~el~~~i~~ 300 (308)
+++||++|+|+++++++|..
T Consensus 144 v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 144 VHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp EECCTTTCTTCTTHHHHTTT
T ss_pred EEEeeeeccCcchhhhhhhh
Confidence 99999999999999999864
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-17 Score=162.80 Aligned_cols=155 Identities=21% Similarity=0.270 Sum_probs=97.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceecc------------------------------CCCCceEEEE--EEEeC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTS------------------------------KTPGKTQCIN--HFRIN 170 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~------------------------------~~~~~t~~~~--~~~~~ 170 (308)
...++|+++|.+|+|||||+++|++... .+.. ..+|+|.+.. .+...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~-~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLN-IVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSS-CSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcC-CccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 4467999999999999999999997532 1111 0246665432 23333
Q ss_pred C-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCC-------CChhHHHHHHHhccCCCC-EEE
Q 021750 171 D-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIP-------AKPIDLEYASWLGQNQIP-MTL 241 (308)
Q Consensus 171 ~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~-------~~~~~~~l~~~~~~~~~p-viv 241 (308)
+ ++.+|||||+.. +.+........+|++++|+|++.+ ...+..+...++...+.| +++
T Consensus 244 ~~~~~iiDTPG~e~-------------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIV 310 (611)
T 3izq_1 244 RANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLII 310 (611)
T ss_dssp SCEEEEEECCSSSC-------------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEECCCCcc-------------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEE
Confidence 3 799999999742 444555556677889999999864 122333444444445554 999
Q ss_pred EeecCCCCCcccCCCCCchhhHHHHHHHHHhhh--cCCCCEEEeecCCCCCHHHH
Q 021750 242 VFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF--QTAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 242 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vSA~~g~gi~el 294 (308)
|+||+|+.+..+. ...+..+++...+.... ...++++++||++|.|++++
T Consensus 311 VvNKiDl~~~~~~---~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 311 AMNKMDNVDWSQQ---RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEECTTTTTTCHH---HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred EEecccccchhHH---HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 9999999863210 01111222222222111 11378999999999999875
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.4e-17 Score=158.58 Aligned_cols=156 Identities=19% Similarity=0.209 Sum_probs=100.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCc-c------eecc------CCCCceEEE--EEEEe---CC---CEEEecCCCcc
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKK-L------ALTS------KTPGKTQCI--NHFRI---ND---SWYLVDLPGYG 182 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~-~------~~~~------~~~~~t~~~--~~~~~---~~---~~~liDtpG~~ 182 (308)
..++|+++|.+|+|||||+++|+.... . ..+. ...|.|... ..+.+ ++ .+.+|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 456999999999999999999986311 0 0000 112333321 11222 22 57899999975
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhh
Q 021750 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEEN 262 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~ 262 (308)
.|...+..++. .+|++++|+|++++...+..+........++|+++|+||+|+.... .
T Consensus 85 ----------dF~~ev~r~l~---~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~------~--- 142 (600)
T 2ywe_A 85 ----------DFSYEVSRALA---ACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD------V--- 142 (600)
T ss_dssp ----------GGHHHHHHHHH---TCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC------H---
T ss_pred ----------hHHHHHHHHHH---hCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC------H---
Confidence 33334445444 3456999999999888777655555556789999999999997532 2
Q ss_pred HHHHHHHHHhhhcC-CCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 263 LNDFQELIQGFFQT-APPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 263 ~~~~~~~~~~~~~~-~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
++..+.+.+.+.. ..+++++||++|.|+++++++|.+.+
T Consensus 143 -~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 143 -DRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp -HHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred -HHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhc
Confidence 2233333333321 13589999999999999999998764
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=9e-17 Score=152.30 Aligned_cols=158 Identities=15% Similarity=0.212 Sum_probs=92.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCC--ccee---------------------------ccCCCCceEEEE--EEEeCC-
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRK--KLAL---------------------------TSKTPGKTQCIN--HFRIND- 171 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~--~~~~---------------------------~~~~~~~t~~~~--~~~~~~- 171 (308)
..++|+++|.+|+|||||+++|++.. .... .....|+|.+.. .+...+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 45699999999999999999998641 1000 011345555443 333333
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCC-------CChhHHHHHHHhccCCC-CEEEEe
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIP-------AKPIDLEYASWLGQNQI-PMTLVF 243 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~-------~~~~~~~l~~~~~~~~~-pvivV~ 243 (308)
.+.+|||||+. +| ..........+|++++|+|++++ ...+..+...++...+. |+++|+
T Consensus 85 ~~~iiDtpG~~----------~f---~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivvi 151 (435)
T 1jny_A 85 FFTIIDAPGHR----------DF---VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAV 151 (435)
T ss_dssp EEEECCCSSST----------TH---HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEE
T ss_pred EEEEEECCCcH----------HH---HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEE
Confidence 79999999964 23 33333455667789999999985 33333444444444555 699999
Q ss_pred ecCCCCCcccCCCCCchhhHHHHHHHHHhhh--cCCCCEEEeecCCCCCHHHHH
Q 021750 244 TKCDKRKKKKNGGKRPEENLNDFQELIQGFF--QTAPPWIMTSSVTNQGRDEIL 295 (308)
Q Consensus 244 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vSA~~g~gi~el~ 295 (308)
||+|+.+..... .......+++.+.+.... ...++++++||++|+|+.+++
T Consensus 152 NK~Dl~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 152 NKMDLTEPPYDE-KRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp ECGGGSSSTTCH-HHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred EcccCCCccccH-HHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 999998631000 001122233333333221 113789999999999997543
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-18 Score=168.12 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=87.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcc-----------------------e------eccCCCCceEEEEEEE--eC-
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKL-----------------------A------LTSKTPGKTQCINHFR--IN- 170 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~-----------------------~------~~~~~~~~t~~~~~~~--~~- 170 (308)
...++|+++|.+|+|||||+++|++.... . .....+|+|.+..... .+
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 34568999999999999999999752100 0 0011346666543322 23
Q ss_pred CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-------ChhHHHHHHHhccCCCC-EEEE
Q 021750 171 DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-------KPIDLEYASWLGQNQIP-MTLV 242 (308)
Q Consensus 171 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~-------~~~~~~l~~~~~~~~~p-vivV 242 (308)
..+.+|||||+..... .+. .....+|++++|+|++.+. ..+..+...++...++| +|+|
T Consensus 255 ~~i~iiDTPGh~~f~~----------~~~---~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvv 321 (592)
T 3mca_A 255 KIYEIGDAPGHRDFIS----------GMI---AGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVS 321 (592)
T ss_dssp ----CCEEESSSEEEE----------ECC---C-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEE
T ss_pred eEEEEEECCChHHHHH----------HHH---HHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEE
Confidence 3799999999753110 111 2223456689999998643 44445555566666776 9999
Q ss_pred eecCCCCCcccCCCCCchhhHHHHHHHHHhhh----c---CCCCEEEeecCCCCCHH--------------HHHHHHHH
Q 021750 243 FTKCDKRKKKKNGGKRPEENLNDFQELIQGFF----Q---TAPPWIMTSSVTNQGRD--------------EILLHMAQ 300 (308)
Q Consensus 243 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~vSA~~g~gi~--------------el~~~i~~ 300 (308)
+||+|+.+.. .+..+.+.+.+...+ + ..++++++||++|.|++ +|++.|.+
T Consensus 322 iNKiDl~~~~-------~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~ 393 (592)
T 3mca_A 322 VNKLDLMSWS-------EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQ 393 (592)
T ss_dssp EECGGGGTTC-------HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHT
T ss_pred Eecccccccc-------HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHh
Confidence 9999997521 223333444443333 1 12579999999999998 67777654
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.68 E-value=8.6e-17 Score=160.19 Aligned_cols=167 Identities=22% Similarity=0.240 Sum_probs=112.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCccee----ccCCC----------------------------------------
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLAL----TSKTP---------------------------------------- 158 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~----~~~~~---------------------------------------- 158 (308)
-..|+|+++|.+|+|||||+|+|++..+.+. ++..|
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3567999999999999999999999764221 11110
Q ss_pred -----CceEEEEEEE--e--CCCEEEecCCCcccCCC---chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHH
Q 021750 159 -----GKTQCINHFR--I--NDSWYLVDLPGYGYAAA---PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL 226 (308)
Q Consensus 159 -----~~t~~~~~~~--~--~~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~ 226 (308)
+.+.....+. . ..+++++||||+..... ..++...+..+...|+. ...|++++|+|++.+....+.
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~--~~aDlIL~VVDAs~~~~~~d~ 206 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLANSDA 206 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT--STTEEEEEEEETTSCSSSCHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh--cCCcEEEEEEcCCCCcchhHH
Confidence 0010111111 1 12689999999986321 22333456677777776 455779999999987776665
Q ss_pred -HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc---CCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 227 -EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ---TAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 227 -~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
.+..++...++|+++|+||+|+.+... . ...+.. ..... .+.+++++||++|.|+++|++.+.+.
T Consensus 207 l~ll~~L~~~g~pvIlVlNKiDlv~~~~-----~---~~~il~--~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 207 LKIAKEVDPQGQRTIGVITKLDLMDEGT-----D---ARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHHCTTCSSEEEEEECTTSSCTTC-----C---SHHHHT--TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEeCcccCCcch-----h---hHHHHH--HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 678888888999999999999986432 1 111111 11111 12467889999999999999999874
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-16 Score=144.57 Aligned_cols=156 Identities=17% Similarity=0.210 Sum_probs=94.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC-----CcceeccCCCCceEEE------------------EE--------------
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRR-----KKLALTSKTPGKTQCI------------------NH-------------- 166 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~-----~~~~~~~~~~~~t~~~------------------~~-------------- 166 (308)
..+.|+++|.+|||||||+++|... .........|+.+... ..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 4568999999999999999999742 1222222222211100 00
Q ss_pred ---------EEeC-CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCC
Q 021750 167 ---------FRIN-DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ 236 (308)
Q Consensus 167 ---------~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~ 236 (308)
+... ..++++||||+.. .... ....+|++++|+|+......... ...+ ..
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~-------------~~~~---~~~~aD~vl~V~d~~~~~~~~~l--~~~~--~~ 217 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQ-------------SEVA---VANMVDTFVLLTLARTGDQLQGI--KKGV--LE 217 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSS-------------HHHH---HHTTCSEEEEEEESSTTCTTTTC--CTTS--GG
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCc-------------HHHH---HHHhCCEEEEEECCCCCccHHHH--HHhH--hh
Confidence 0112 3799999999753 0111 12456779999998765433221 1111 24
Q ss_pred CCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh----cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 237 IPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF----QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 237 ~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+|+++|+||+|+..... .....+++.+.+.... .+..+++++||++|+|+++++++|.+.+..
T Consensus 218 ~p~ivVlNK~Dl~~~~~-----~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 218 LADIVVVNKADGEHHKE-----ARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GCSEEEEECCCGGGHHH-----HHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCcChhH-----HHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 69999999999875322 1222333333332211 224789999999999999999999988765
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-17 Score=157.56 Aligned_cols=154 Identities=19% Similarity=0.203 Sum_probs=94.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCC--cc---------------------eec------cCCCCceEEEE--EEEeCC-C
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRK--KL---------------------ALT------SKTPGKTQCIN--HFRIND-S 172 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~--~~---------------------~~~------~~~~~~t~~~~--~~~~~~-~ 172 (308)
.++|+++|.+|+|||||+++|++.. .. +.+ ....|.|.+.. .+..++ +
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 4699999999999999999998641 00 000 01245554432 333333 7
Q ss_pred EEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCCh-------hHHHHHHHhccCCCC-EEEEee
Q 021750 173 WYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP-------IDLEYASWLGQNQIP-MTLVFT 244 (308)
Q Consensus 173 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~-------~~~~l~~~~~~~~~p-vivV~N 244 (308)
+.+|||||+. + +.+........+|++++|+|++++... +..+...++...++| +++|+|
T Consensus 87 ~~iiDtPGh~----------~---f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviN 153 (458)
T 1f60_A 87 VTVIDAPGHR----------D---FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVN 153 (458)
T ss_dssp EEEEECCCCT----------T---HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEECCCcH----------H---HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEE
Confidence 9999999964 2 344444556677889999999865322 333444444456776 999999
Q ss_pred cCCCCCcccCCCCCchhhHHHHHHHHHhhhc--CCCCEEEeecCCCCCHHHH
Q 021750 245 KCDKRKKKKNGGKRPEENLNDFQELIQGFFQ--TAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 245 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vSA~~g~gi~el 294 (308)
|+|+.+..+. ...+..+++.+.+....- ...+++++||++|+|++++
T Consensus 154 K~Dl~~~~~~---~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 154 KMDSVKWDES---RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CGGGGTTCHH---HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred ccccccCCHH---HHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 9999842110 011122233333322210 1378999999999999754
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-16 Score=161.64 Aligned_cols=162 Identities=19% Similarity=0.239 Sum_probs=103.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCC-------ccee-------ccCCCCceEEEEEEEe--C-CCEEEecCCCcccCC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRK-------KLAL-------TSKTPGKTQCINHFRI--N-DSWYLVDLPGYGYAA 185 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~-------~~~~-------~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~ 185 (308)
....+|+++|.+|+|||||+++|++.. +... .....|.|.....+.+ + ..+.+|||||+.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe--- 370 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA--- 370 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH---
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH---
Confidence 445799999999999999999998731 0000 1123455554332233 2 379999999953
Q ss_pred CchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhHH
Q 021750 186 APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENLN 264 (308)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~~ 264 (308)
+ +..........+|++++|+|++++...+..+....+...++| +|+|+||+|+.+..+ ..+...+
T Consensus 371 -------d---F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e----~le~i~e 436 (1289)
T 3avx_A 371 -------D---YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEE----LLELVEM 436 (1289)
T ss_dssp -------H---HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHH----HHHHHHH
T ss_pred -------H---HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchh----hHHHHHH
Confidence 2 444455566677889999999988776666655566566888 789999999985221 0111122
Q ss_pred HHHHHHHhhh--cCCCCEEEeecCCC--------CCHHHHHHHHHHH
Q 021750 265 DFQELIQGFF--QTAPPWIMTSSVTN--------QGRDEILLHMAQL 301 (308)
Q Consensus 265 ~~~~~~~~~~--~~~~~~~~vSA~~g--------~gi~el~~~i~~~ 301 (308)
++.+.+.... ....+++++||++| .|+++++++|.+.
T Consensus 437 Ei~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 437 EVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp HHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence 3333333221 12479999999999 4688888888764
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-16 Score=144.84 Aligned_cols=121 Identities=23% Similarity=0.290 Sum_probs=83.8
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCC-CchhhhhchH
Q 021750 120 CPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAA-APRELRTDWD 195 (308)
Q Consensus 120 ~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~-~~~~~~~~~~ 195 (308)
..+.|..+|+|||.||||||||+|+|++.+ +.+.+.|++|.+. ..+.+.+ ++.++||||+.... .+.+
T Consensus 67 v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~--~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~------ 138 (376)
T 4a9a_A 67 VARTGVASVGFVGFPSVGKSTLLSKLTGTE--SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRG------ 138 (376)
T ss_dssp BCBCSSEEEEEECCCCHHHHHHHHHHHSBC--CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----C------
T ss_pred EeecCCCeEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhH------
Confidence 346778899999999999999999999975 5678889988864 4556666 89999999998642 2233
Q ss_pred HHHHHHHHhcCCccEEEEEEeCCCCCChhHH---HHHHHh-ccCCCCEEEEeecCCCC
Q 021750 196 KFTKDYFLNRSTLVSVFLLIDASIPAKPIDL---EYASWL-GQNQIPMTLVFTKCDKR 249 (308)
Q Consensus 196 ~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~---~l~~~~-~~~~~pvivV~NK~Dl~ 249 (308)
+...++.....+|++++|+|++++....+. ++..+- ....+|.++++||+|..
T Consensus 139 -~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 139 -RGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp -HHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred -HHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 223333444456779999999876433221 222221 12567888899999864
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-16 Score=152.62 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=86.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCC--cc---------------------eeccC------CCCceEEEE--EEEeCC-C
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRK--KL---------------------ALTSK------TPGKTQCIN--HFRIND-S 172 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~--~~---------------------~~~~~------~~~~t~~~~--~~~~~~-~ 172 (308)
.++|+++|.+|+|||||+++|+... .. +...+ ..|.|.... .+..++ .
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 4699999999999999999997521 10 01111 234555432 344444 7
Q ss_pred EEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCC-------hhHHHHHHHhccCCCC-EEEEee
Q 021750 173 WYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAK-------PIDLEYASWLGQNQIP-MTLVFT 244 (308)
Q Consensus 173 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~-------~~~~~l~~~~~~~~~p-vivV~N 244 (308)
+.+|||||+.+ +.+........+|++++|+|++++.. .+..+....+...++| +++|+|
T Consensus 123 ~~iiDtPGh~~-------------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviN 189 (467)
T 1r5b_A 123 FSLLDAPGHKG-------------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVIN 189 (467)
T ss_dssp EEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEE
T ss_pred EEEEECCCcHH-------------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEE
Confidence 99999999642 33333444566778999999997631 2233334444556787 999999
Q ss_pred cCCCCCcccCCCCCchhhHHHHHHHHHhhhc----CCCCEEEeecCCCCCHHHHH
Q 021750 245 KCDKRKKKKNGGKRPEENLNDFQELIQGFFQ----TAPPWIMTSSVTNQGRDEIL 295 (308)
Q Consensus 245 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~vSA~~g~gi~el~ 295 (308)
|+|+...... ........+++.+.+....+ ...+++++||++|.|+++++
T Consensus 190 K~Dl~~~~~~-~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 190 KMDEPSVQWS-EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CTTSTTCSSC-HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccCCCcccc-HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 9999642100 00011122233333332201 13679999999999998755
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=6.3e-17 Score=151.34 Aligned_cols=87 Identities=21% Similarity=0.198 Sum_probs=45.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--E--EE-------------------eC----CCEEEecC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--H--FR-------------------IN----DSWYLVDL 178 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~--~~-------------------~~----~~~~liDt 178 (308)
++|+++|.||||||||+|+|++.+ ..++..|++|.... . +. ++ .++.+|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~--~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 379999999999999999999975 45667777765421 1 11 11 15889999
Q ss_pred CCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCC
Q 021750 179 PGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIP 220 (308)
Q Consensus 179 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~ 220 (308)
||+..... ....+...++.....+|++++|+|++..
T Consensus 79 pG~~~~a~------~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAH------EGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C---------------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchh------hhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 99864221 1112334444555677889999999875
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-16 Score=144.39 Aligned_cols=164 Identities=22% Similarity=0.288 Sum_probs=100.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccC----CCC----------------------------------------
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSK----TPG---------------------------------------- 159 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~----~~~---------------------------------------- 159 (308)
..+.|+|+|.+|||||||+|+|++..+.+.... .|.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 456999999999999999999999764221111 000
Q ss_pred --------ceEEEEEEEe----CCCEEEecCCCcccCCC---chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC--C
Q 021750 160 --------KTQCINHFRI----NDSWYLVDLPGYGYAAA---PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA--K 222 (308)
Q Consensus 160 --------~t~~~~~~~~----~~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~--~ 222 (308)
.......+.+ ...+.+|||||+..... .......+..+...|+...+. +++++|+.... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~---iilvv~~~~~~~~~ 189 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNC---IILAISPANQDLAT 189 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSE---EEEEEEETTSCGGG
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCe---EEEEeecccCCcCC
Confidence 0000001111 12689999999876321 223334556677777765543 77778765432 2
Q ss_pred hhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHH
Q 021750 223 PIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 223 ~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
.....+...+...++|+++|+||+|+.+.... . .+.+.. .......+|+++|++++.++++.+.++..
T Consensus 190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~----~---~~~~~~---~~~~~~~~~~~v~~~s~~~i~~~~~~~~~ 257 (360)
T 3t34_A 190 SDAIKISREVDPSGDRTFGVLTKIDLMDKGTD----A---VEILEG---RSFKLKYPWVGVVNRSQADINKNVDMIAA 257 (360)
T ss_dssp CHHHHHHHHSCTTCTTEEEEEECGGGCCTTCC----S---HHHHTT---SSSCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred HHHHHHHHHhcccCCCEEEEEeCCccCCCccc----H---HHHHcC---ccccccCCeEEEEECChHHhccCCCHHHH
Confidence 23345666666678999999999999864321 1 111111 11223478999999999888876655443
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-15 Score=146.66 Aligned_cols=114 Identities=18% Similarity=0.269 Sum_probs=77.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCc-ce-------------ecc------CCCCceEE--EEEEEeCC-CEEEecCCCc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKK-LA-------------LTS------KTPGKTQC--INHFRIND-SWYLVDLPGY 181 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~-~~-------------~~~------~~~~~t~~--~~~~~~~~-~~~liDtpG~ 181 (308)
..+|+++|.+|+|||||+++|+.... +. .+. ...|.|.. ...+.+++ .+.+|||||+
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 46999999999999999999996321 10 000 12233322 22344444 7999999997
Q ss_pred ccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 182 GYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
.+ |...+..++ ..+|++++|+|++.+...+..++..++...++|+++|+||+|+...
T Consensus 93 ~d----------f~~~~~~~l---~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 93 ED----------FSEDTYRTL---TAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp TT----------CCHHHHHGG---GGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred hh----------HHHHHHHHH---HHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence 42 222333444 3456699999999988777777777777789999999999999754
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-16 Score=144.64 Aligned_cols=156 Identities=16% Similarity=0.153 Sum_probs=88.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC-----CcceeccCCCC-------------------------------------ce
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRR-----KKLALTSKTPG-------------------------------------KT 161 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~-----~~~~~~~~~~~-------------------------------------~t 161 (308)
..+.|+|+|.||||||||+|+|++. ..+.+....|+ ++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 3568999999999999999999962 11122222221 11
Q ss_pred EEE----EEEEeC-CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCC
Q 021750 162 QCI----NHFRIN-DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ 236 (308)
Q Consensus 162 ~~~----~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~ 236 (308)
... ..+... ..++++||||+... + . .. ...+|++++|+|++.+..... +...+ ..
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~----~-------~--~l---~~~~d~vl~V~d~~~~~~~~~--i~~~i--l~ 212 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQS----E-------F--AV---ADMVDMFVLLLPPAGGDELQG--IKRGI--IE 212 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--C----H-------H--HH---HTTCSEEEEEECCC----------------CC
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchh----h-------h--hH---HhhCCEEEEEEcCCcchhHHH--hHHHH--Hh
Confidence 100 000112 37899999997521 0 0 11 234577999999986543221 11111 25
Q ss_pred CCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh----cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 237 IPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF----QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 237 ~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.|.++|+||+|+.+... .......+...+.... .+..+++++||++|+|+++++++|.+.+..
T Consensus 213 ~~~ivVlNK~Dl~~~~~-----~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 213 MADLVAVTKSDGDLIVP-----ARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp SCSEEEECCCSGGGHHH-----HHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCEEEEeeecCCCchh-----HHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 68999999999874211 1112333333332111 123678999999999999999999987654
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=135.28 Aligned_cols=124 Identities=14% Similarity=0.093 Sum_probs=79.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|+|||||+|+|++..+ ..++..+++|.... .+..++ .+.+|||||+.+...... .+...+..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~---~~~~~i~~ 113 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERV-VSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIND---MALNIIKS 113 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCC-SCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECH---HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc-ccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchH---HHHHHHHH
Confidence 357999999999999999999998754 34556666665432 233344 799999999865322111 12222333
Q ss_pred HHHhcCCccEEEEEEeCCC-CCChhHHHHHHHhcc-----CCCCEEEEeecCCCCCcc
Q 021750 201 YFLNRSTLVSVFLLIDASI-PAKPIDLEYASWLGQ-----NQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~-~~~~~~~~l~~~~~~-----~~~pvivV~NK~Dl~~~~ 252 (308)
|+ ....++++++|+|.+. .....+.++...+.. ..+|+++|+||+|+....
T Consensus 114 ~~-~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 114 FL-LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HT-TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred Hh-hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 32 2345678999988764 334444444444432 126999999999997543
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.7e-15 Score=147.94 Aligned_cols=117 Identities=13% Similarity=0.100 Sum_probs=79.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCC--cc--e------eccC------CCCceEE--EEEEEeCC-CEEEecCCCcc
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRK--KL--A------LTSK------TPGKTQC--INHFRIND-SWYLVDLPGYG 182 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~--~~--~------~~~~------~~~~t~~--~~~~~~~~-~~~liDtpG~~ 182 (308)
.....+|+|+|.+|+|||||+|+|+... .. . .+.+ .+++|.. ...+.+++ .+.+|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 3456799999999999999999999521 10 0 0111 2233332 22344444 79999999975
Q ss_pred cCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
+ |...+..++.. +|++++|+|++.+.......+...+...++|+++|+||+|+...
T Consensus 87 d----------f~~~~~~~l~~---aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 D----------FTVEVERSLRV---LDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp S----------CCHHHHHHHHH---CSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred c----------hHHHHHHHHHH---CCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 3 22244455554 45699999999988887777677777789999999999999764
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-15 Score=148.64 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=78.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCc-c---ee------ccC------CCCceEE--EEEEEeCC-CEEEecCCCccc
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKK-L---AL------TSK------TPGKTQC--INHFRIND-SWYLVDLPGYGY 183 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~-~---~~------~~~------~~~~t~~--~~~~~~~~-~~~liDtpG~~~ 183 (308)
....+|+|+|.+|+|||||+++|+.... . .. +.+ ..+.|.. ...+.+++ .+.+|||||+.
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~- 88 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV- 88 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST-
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc-
Confidence 3457999999999999999999984210 0 00 000 2233332 23344444 79999999974
Q ss_pred CCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 184 AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
.|...+..++..+ |++++|+|++.+...........+...++|+++|+||+|+...
T Consensus 89 ---------df~~~~~~~l~~a---D~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 89 ---------DFTIEVERSMRVL---DGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp ---------TCHHHHHHHHHHC---SEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred ---------chHHHHHHHHHHC---CEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 2334555555544 4599999999988887776666677789999999999999764
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-15 Score=131.71 Aligned_cols=123 Identities=17% Similarity=0.149 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+++|.+|||||||+|+|++.+. ..+...+++|... ..+..++ .+.+|||||+.+.....+ .+...+..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~---~~~~~i~~ 110 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQV-VRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNH---QALELIKG 110 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCC-SCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECH---HHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchH---HHHHHHHH
Confidence 346999999999999999999999764 3456666665532 3344455 799999999865332221 22223334
Q ss_pred HHHhcCCccEEEEEEeCCCC-CChhHHHHHHHhcc-----CCCCEEEEeecCCCCCc
Q 021750 201 YFLNRSTLVSVFLLIDASIP-AKPIDLEYASWLGQ-----NQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~-~~~~~~~l~~~~~~-----~~~pvivV~NK~Dl~~~ 251 (308)
++ ....++++++|+|.+.. ....+..+..++.. ...|+++|+||+|+...
T Consensus 111 ~l-~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 111 FL-VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HT-TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HH-hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 33 33456789999887653 33344344444432 13599999999999643
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=143.79 Aligned_cols=113 Identities=21% Similarity=0.263 Sum_probs=78.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcc----ee------ccC------CCCceEE--EEEEEeCC-CEEEecCCCcccC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKL----AL------TSK------TPGKTQC--INHFRIND-SWYLVDLPGYGYA 184 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~----~~------~~~------~~~~t~~--~~~~~~~~-~~~liDtpG~~~~ 184 (308)
...+|+|+|.+|+|||||+++|++.... .. ... ..+.+.. ...+.... .+.+|||||..
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~-- 85 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG-- 85 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG--
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc--
Confidence 3458999999999999999999953211 00 000 1123322 22333333 78999999964
Q ss_pred CCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCC
Q 021750 185 AAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249 (308)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~ 249 (308)
.|...+..++..+ +++++|+|++.+......++...+...++|+++|+||+|+.
T Consensus 86 --------~f~~~~~~~l~~a---d~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 --------DFVGEIRGALEAA---DAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp --------GGHHHHHHHHHHC---SEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred --------chHHHHHHHHhhc---CcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 3444555565554 45899999998888777777777777899999999999987
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-14 Score=142.77 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCc-ce---------eccC------CCCceEEE--EEEEeC--------CCEEEe
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKK-LA---------LTSK------TPGKTQCI--NHFRIN--------DSWYLV 176 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~-~~---------~~~~------~~~~t~~~--~~~~~~--------~~~~li 176 (308)
...++|+|+|..|+|||||+++|+.... .. ...+ ..+.|... ..+.++ ..+.+|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 4567999999999999999999975310 00 0111 23444432 223332 368999
Q ss_pred cCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 177 DLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 177 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
||||.. .|...+..+++. +|++++|+|++.+...+...+...+...++|+++|+||+|+...
T Consensus 88 DTPG~~----------df~~~~~~~l~~---aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHV----------DFTIEVERSMRV---LDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCcc----------chHHHHHHHHHH---CCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 999975 233344555544 45699999999887776666666666678999999999998754
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-15 Score=125.07 Aligned_cols=116 Identities=22% Similarity=0.260 Sum_probs=69.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
...++|+++|.+|||||||+++|++..+.. ..+..++++... ....+.+|||||..... ..+..|
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~~----------~~~~~~ 111 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKLR----------YKLSDY 111 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTCSEEEETTCCBSS----------CCHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECCCCchHH----------HHHHHH
Confidence 456799999999999999999999976422 112233332211 23378999999975321 122333
Q ss_pred HHh-cCCccEEEEEEeCC-CCCChhHH--HHHHHhc------cCCCCEEEEeecCCCCCcc
Q 021750 202 FLN-RSTLVSVFLLIDAS-IPAKPIDL--EYASWLG------QNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 202 ~~~-~~~~~~vl~viD~~-~~~~~~~~--~l~~~~~------~~~~pvivV~NK~Dl~~~~ 252 (308)
+.. ...++++++|+|++ +..+.... .+..++. ..+.|+++|+||+|+....
T Consensus 112 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 112 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp HHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 322 23356699999998 43322221 1222221 2489999999999998654
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7e-15 Score=132.70 Aligned_cols=170 Identities=21% Similarity=0.227 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC-CcceeccC------CCCceEEEEEEEe--CC---CEEEecCCCcccCCCc----
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRR-KKLALTSK------TPGKTQCINHFRI--ND---SWYLVDLPGYGYAAAP---- 187 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~-~~~~~~~~------~~~~t~~~~~~~~--~~---~~~liDtpG~~~~~~~---- 187 (308)
-.++|+|+|++|||||||+++|++. .+...... .++.......+.. ++ .+.+|||+|+......
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 3469999999999999999999875 22111000 1111111111111 22 5899999998532111
Q ss_pred hhhhhchHHHHHHHHHhcCC----------ccEEEEEEeCCC-CCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCC
Q 021750 188 RELRTDWDKFTKDYFLNRST----------LVSVFLLIDASI-PAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGG 256 (308)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~----------~~~vl~viD~~~-~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~ 256 (308)
..+...+......|+....+ +++++|+++++. +....+.++...+. ...++++|+||+|+....+
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~e--- 172 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKE--- 172 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHHH---
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHHH---
Confidence 11111111112255544332 234667766654 36555555555543 3679999999999975321
Q ss_pred CCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 257 KRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.....++..+.+... .++++++||+++ |++++|.++.+.+.
T Consensus 173 --~~~~~~~~~~~~~~~---~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 173 --RERLKKRILDEIEEH---NIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp --HHHHHHHHHHHHHHT---TCCCCCCC----------CHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHc---CCeEEecCCccc-cccHHHHHHHHHhh
Confidence 111112223333222 478999999999 99999999887764
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=140.05 Aligned_cols=115 Identities=21% Similarity=0.296 Sum_probs=82.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCc-c-------------eeccC------CCCceE--EEEEEEeCC-CEEEecCCCc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKK-L-------------ALTSK------TPGKTQ--CINHFRIND-SWYLVDLPGY 181 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~-~-------------~~~~~------~~~~t~--~~~~~~~~~-~~~liDtpG~ 181 (308)
..+|+|+|..++|||||..+|+.... + ..+.+ ..|.|. ....+.+++ .+.++||||+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 45899999999999999999973210 0 00111 113332 134556666 7999999998
Q ss_pred ccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcc
Q 021750 182 GYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~ 252 (308)
.+ |..+..+....+|.+++|+|+..+...+...+.+.+...++|.++++||+|....+
T Consensus 111 vD-------------F~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 111 QD-------------FSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALH 168 (548)
T ss_dssp GG-------------CSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCC
T ss_pred HH-------------HHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcc
Confidence 64 33344455556777999999999999988888888888999999999999987543
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.56 E-value=9.4e-15 Score=134.11 Aligned_cols=156 Identities=15% Similarity=0.163 Sum_probs=90.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC-----CcceeccCCCCceEE---------------------EEE-----------
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRR-----KKLALTSKTPGKTQC---------------------INH----------- 166 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~-----~~~~~~~~~~~~t~~---------------------~~~----------- 166 (308)
....|+++|.+|+|||||++.|.+. .....+...++++.. +..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~ 134 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 134 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhH
Confidence 3458999999999999999999742 122333333322210 000
Q ss_pred ---------EEe-CCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCC
Q 021750 167 ---------FRI-NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ 236 (308)
Q Consensus 167 ---------~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~ 236 (308)
+.. +..++++||||+... .... ...+|++++|+|++.+....... .. ..+
T Consensus 135 ~~~~~~~~~~~~~~~~i~liDTpG~~~~-------------~~~~---~~~aD~vl~Vvd~~~~~~~~~l~--~~--~~~ 194 (341)
T 2p67_A 135 QRARELMLLCEAAGYDVVIVETVGVGQS-------------ETEV---ARMVDCFISLQIAGGGDDLQGIK--KG--LME 194 (341)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTH-------------HHHH---HTTCSEEEEEECC------CCCC--HH--HHH
T ss_pred HHHHHHHHHhhccCCCEEEEeCCCccch-------------HHHH---HHhCCEEEEEEeCCccHHHHHHH--Hh--hhc
Confidence 002 237999999997531 1111 24567799999997543211110 00 124
Q ss_pred CCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc----CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 237 IPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ----TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 237 ~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+|.++|+||+|+..... .....+++.+.+..... +..+++++||++|+|+++++++|.+.+..
T Consensus 195 ~p~ivv~NK~Dl~~~~~-----~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~ 261 (341)
T 2p67_A 195 VADLIVINKDDGDNHTN-----VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA 261 (341)
T ss_dssp HCSEEEECCCCTTCHHH-----HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred ccCEEEEECCCCCChHH-----HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 78999999999975321 11122233333322110 13678999999999999999999987653
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-14 Score=126.28 Aligned_cols=170 Identities=15% Similarity=0.145 Sum_probs=96.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHh-----cCCcceeccCCCCceE-------------EEE---------------------
Q 021750 125 LPEFALVGRSNVGKSSLLNSLV-----RRKKLALTSKTPGKTQ-------------CIN--------------------- 165 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~-----~~~~~~~~~~~~~~t~-------------~~~--------------------- 165 (308)
...++++|.+|||||||++.|. +. ....+...++.+. ...
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~-~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNY-KVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLM 92 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTS-CEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCC-eEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHh
Confidence 4578999999999999999998 43 2333333332100 000
Q ss_pred -----------EEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHH-H----H
Q 021750 166 -----------HFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLE-Y----A 229 (308)
Q Consensus 166 -----------~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~-l----~ 229 (308)
.+..+..+++|||||...... +..+.......... +++++++|+.......+.. . .
T Consensus 93 ~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~-------~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~ 164 (262)
T 1yrb_A 93 EKFNEYLNKILRLEKENDYVLIDTPGQMETFL-------FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFAL 164 (262)
T ss_dssp TTHHHHHHHHHHHHHHCSEEEEECCSSHHHHH-------HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCEEEEeCCCccchhh-------hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHH
Confidence 000012799999999743110 00011111122234 6799999987655544321 1 1
Q ss_pred HHhccCCCCEEEEeecCCCCCcccCCCCCchh---hHHHHHHHH-----------------HhhhcCCCCEEEeecCCCC
Q 021750 230 SWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEE---NLNDFQELI-----------------QGFFQTAPPWIMTSSVTNQ 289 (308)
Q Consensus 230 ~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~-----------------~~~~~~~~~~~~vSA~~g~ 289 (308)
......++|+++|+||+|+....+.. ...+ ..+.+.+.+ ...+....+++++||++|+
T Consensus 165 ~~~~~~~~p~~iv~NK~D~~~~~~~~--~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~ 242 (262)
T 1yrb_A 165 LIDLRLGATTIPALNKVDLLSEEEKE--RHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTRE 242 (262)
T ss_dssp HHHHHHTSCEEEEECCGGGCCHHHHH--HHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCT
T ss_pred HHhcccCCCeEEEEecccccccccHH--HHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcc
Confidence 12223478999999999987542100 0001 111111111 0122233589999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 021750 290 GRDEILLHMAQLRNYW 305 (308)
Q Consensus 290 gi~el~~~i~~~~~~~ 305 (308)
|+++++++|.+.+...
T Consensus 243 gi~~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 243 GFEDLETLAYEHYCTC 258 (262)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccc
Confidence 9999999999988654
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-15 Score=127.86 Aligned_cols=155 Identities=11% Similarity=0.081 Sum_probs=92.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCC----cceeccCCCCceEE----------EEEE------------------EeC-
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRK----KLALTSKTPGKTQC----------INHF------------------RIN- 170 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~----~~~~~~~~~~~t~~----------~~~~------------------~~~- 170 (308)
..++|+++|.+|||||||+++|++.. ..+.+...++.+.+ ...+ ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 45699999999999999999998741 12333333332110 0000 011
Q ss_pred CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 171 DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 171 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
..+.+|||+|..... .++. . ..+.+++|+|+..+..... .+....+.|+++|+||+|+.+
T Consensus 109 ~d~iiidt~G~~~~~--------------~~~~-~-~~~~~i~vvd~~~~~~~~~----~~~~~~~~~~iiv~NK~Dl~~ 168 (221)
T 2wsm_A 109 CDLLLIENVGNLICP--------------VDFD-L-GENYRVVMVSVTEGDDVVE----KHPEIFRVADLIVINKVALAE 168 (221)
T ss_dssp CSEEEEEEEEBSSGG--------------GGCC-C-SCSEEEEEEEGGGCTTHHH----HCHHHHHTCSEEEEECGGGHH
T ss_pred CCEEEEeCCCCCCCC--------------chhc-c-ccCcEEEEEeCCCcchhhh----hhhhhhhcCCEEEEecccCCc
Confidence 257788888842100 0010 1 1245899999987643221 112223589999999999864
Q ss_pred cccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 251 KKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
... ...+++.+.+... ....+++++||++|+|+++++++|.+.+..+.
T Consensus 169 ~~~-------~~~~~~~~~~~~~-~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 169 AVG-------ADVEKMKADAKLI-NPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHT-------CCHHHHHHHHHHH-CTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred chh-------hHHHHHHHHHHHh-CCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 321 1133444444332 23478999999999999999999998876554
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.8e-14 Score=136.02 Aligned_cols=128 Identities=19% Similarity=0.202 Sum_probs=84.4
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEEEEE--------------------------------
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCINHF-------------------------------- 167 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~~~~-------------------------------- 167 (308)
...+.++|+|+|.+|||||||+|+|++.+... .++..+++++.....
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 34567899999999999999999999976421 355555554321110
Q ss_pred ------EeC----CCEEEecCCCcccCCC-chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCC-CChhHHHHHHHhccC
Q 021750 168 ------RIN----DSWYLVDLPGYGYAAA-PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIP-AKPIDLEYASWLGQN 235 (308)
Q Consensus 168 ------~~~----~~~~liDtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~-~~~~~~~l~~~~~~~ 235 (308)
.+. .++.+|||||+..... .......|......++..+ |++++|+|++.. .......+...+...
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~a---D~il~VvDa~~~~~~~~~~~~l~~l~~~ 217 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERV---DLIILLFDAHKLEISDEFSEAIGALRGH 217 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHC---SEEEEEEETTSCCCCHHHHHHHHHTTTC
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhC---CEEEEEEeCCcCCCCHHHHHHHHHHHhc
Confidence 011 2589999999875211 1110112445666665544 559999999874 555556666777767
Q ss_pred CCCEEEEeecCCCCCc
Q 021750 236 QIPMTLVFTKCDKRKK 251 (308)
Q Consensus 236 ~~pvivV~NK~Dl~~~ 251 (308)
+.|+++|+||+|+...
T Consensus 218 ~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 218 EDKIRVVLNKADMVET 233 (550)
T ss_dssp GGGEEEEEECGGGSCH
T ss_pred CCCEEEEEECCCccCH
Confidence 7899999999999854
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-14 Score=133.84 Aligned_cols=166 Identities=18% Similarity=0.258 Sum_probs=78.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccC------CCCceEEEEEE--EeCC---CEEEecCCCcccCCCchhhhh
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSK------TPGKTQCINHF--RIND---SWYLVDLPGYGYAAAPRELRT 192 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~------~~~~t~~~~~~--~~~~---~~~liDtpG~~~~~~~~~~~~ 192 (308)
-.++|+|+|++|||||||+|+|++..+...... .+........+ ...+ .+.+|||+|+........
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~--- 106 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN--- 106 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-------------
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh---
Confidence 346899999999999999999998754211100 11111111111 1112 588999999865321111
Q ss_pred chHHH-------HHHHHHh----------cCCccEEEEEEeCC-CCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccC
Q 021750 193 DWDKF-------TKDYFLN----------RSTLVSVFLLIDAS-IPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKN 254 (308)
Q Consensus 193 ~~~~~-------~~~~~~~----------~~~~~~vl~viD~~-~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~ 254 (308)
.|..+ ...|+.. ...+++|+|+++++ .+....+.++...+.. ++|+|+|+||+|+....+
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~e- 184 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEE- 184 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHH-
Confidence 11111 2223211 12234577777776 5677776666666654 899999999999975432
Q ss_pred CCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 255 GGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
.....+.+.+.+... +++++++||+++.++++++..+.+.
T Consensus 185 ----v~~~k~~i~~~~~~~---~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 185 ----CQQFKKQIMKEIQEH---KIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp ----HHHHHHHHHHHHHHH---TCCCCCCC-----------------
T ss_pred ----HHHHHHHHHHHHHHc---CCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 111112333333322 4789999999999999888776653
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-15 Score=139.26 Aligned_cols=124 Identities=18% Similarity=0.208 Sum_probs=81.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCC-----cceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCc-hhhhhchHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRK-----KLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAP-RELRTDWDKFTK 199 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~ 199 (308)
.+|+++|.+|+|||||+|+|++.. ....++..||+|.....+.++..+.++||||+.+...- ..+. ...+.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~---~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVG---KQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSC---HHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhh---HHHHH
Confidence 489999999999999999999852 23457889999998888888778999999999764321 1111 12333
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCccc
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKK 253 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~ 253 (308)
.++ .....+.++|++|+.............++...+.|+++++||+|..+..+
T Consensus 238 ~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~ 290 (368)
T 3h2y_A 238 LIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTK 290 (368)
T ss_dssp HHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEE
T ss_pred Hhc-cccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcccccccc
Confidence 332 23455668999998432111122223445556789999999999986543
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4e-14 Score=121.67 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=44.3
Q ss_pred CCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 236 QIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 236 ~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
..|.++|+||+|+.+... ...+++.+.+... ....+++++||++|+|++++|++|.+.+..+
T Consensus 164 ~~~~iiv~NK~Dl~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVG-------ADIKKMENDAKRI-NPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp TTCSEEEEECGGGHHHHT-------CCHHHHHHHHHHH-CTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred hcCCEEEEeccccCchhH-------HHHHHHHHHHHHh-CCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 478899999999875321 1133333333322 2347899999999999999999999887654
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.7e-15 Score=137.54 Aligned_cols=124 Identities=16% Similarity=0.149 Sum_probs=86.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC----CcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCC-chhhhhchHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR----KKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAA-PRELRTDWDKFTKD 200 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~----~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~-~~~~~~~~~~~~~~ 200 (308)
.+|+++|.+|+|||||+|+|++. .....++..||+|.....+.++..+.++||||+..... ...+..+ .+..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~---~l~~ 239 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVDAR---DLKI 239 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSCTT---THHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHhHH---HHHH
Confidence 47999999999999999999985 12356788999999888888888899999999976432 2222211 3333
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCccc
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKK 253 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~ 253 (308)
++ .....+.++|++|+.............++...+.|+++++||+|..+..+
T Consensus 240 ~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~ 291 (369)
T 3ec1_A 240 IT-PKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTK 291 (369)
T ss_dssp HS-CSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEE
T ss_pred Hh-cccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCccccccc
Confidence 32 23445679999998532111121123445556789999999999986543
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.6e-14 Score=138.05 Aligned_cols=115 Identities=21% Similarity=0.280 Sum_probs=84.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCc-c---e------eccCCC------CceEE--EEEEEeCC-CEEEecCCCcccCC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKK-L---A------LTSKTP------GKTQC--INHFRIND-SWYLVDLPGYGYAA 185 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~-~---~------~~~~~~------~~t~~--~~~~~~~~-~~~liDtpG~~~~~ 185 (308)
+.+|+|+|..++|||||..+|+.... + . .+.+.- |.|.. ...+.+++ .+.++||||+.+
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~D-- 79 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMD-- 79 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSS--
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHH--
Confidence 46899999999999999999974210 0 0 011111 33322 22344444 799999999864
Q ss_pred CchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcc
Q 021750 186 APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~ 252 (308)
|..+..+....+|++++|+|+..+...+...+.+.+...++|.++++||+|....+
T Consensus 80 -----------F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 80 -----------FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGID 135 (638)
T ss_dssp -----------THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCC
T ss_pred -----------HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCC
Confidence 55566667777888999999999998888888888888899999999999987543
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.43 E-value=8.9e-13 Score=121.29 Aligned_cols=85 Identities=21% Similarity=0.187 Sum_probs=53.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeC------------------CCEEEecCCCcccCC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIN------------------DSWYLVDLPGYGYAA 185 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~------------------~~~~liDtpG~~~~~ 185 (308)
.+|+|+|.||||||||+|+|++.. ..+...|++|... ..+.+. ..+.+|||||+....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~--~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 489999999999999999999975 3455556555432 123332 258999999987532
Q ss_pred -CchhhhhchHHHHHHHHHhcCCccEEEEEEeCCC
Q 021750 186 -APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASI 219 (308)
Q Consensus 186 -~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~ 219 (308)
.+..++.. ++. +++ .+|++++|+|+++
T Consensus 81 ~~~~gl~~~---fl~-~ir---~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNK---FLA-NIR---ETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCC---HHH-HHH---TCSEEEEEEECSC
T ss_pred cccchHHHH---HHH-HHH---hcCeEEEEEecCC
Confidence 12233322 222 233 4456999999985
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-13 Score=124.17 Aligned_cols=85 Identities=25% Similarity=0.298 Sum_probs=53.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEe----------------------CCCEEEecCCCc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRI----------------------NDSWYLVDLPGY 181 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~----------------------~~~~~liDtpG~ 181 (308)
++|+++|.||||||||+|+|++.. +.+...|++|.. .....+ ...+.+|||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~--~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN--ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH--TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 589999999999999999999863 223334433321 111111 235899999999
Q ss_pred ccCC-CchhhhhchHHHHHHHHHhcCCccEEEEEEeCCC
Q 021750 182 GYAA-APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASI 219 (308)
Q Consensus 182 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~ 219 (308)
.... .+..++.. ++. +++ .+|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~---fl~-~ir---~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQ---FLA-HIR---EVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHH---HHH-HHH---TCSEEEEEEECCC
T ss_pred cccccccchHHHH---HHH-HHH---hCCEEEEEEECCC
Confidence 7643 22232222 322 233 4456999999975
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=6.8e-13 Score=121.50 Aligned_cols=110 Identities=13% Similarity=0.168 Sum_probs=63.5
Q ss_pred CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 171 DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 171 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
..++++||||+.... . . -...+|++++|+|+..+..... +...+ ...+.++|+||+|+..
T Consensus 148 ~~~iliDT~Gi~~~~-----------~--~---v~~~~d~vl~v~d~~~~~~~~~--i~~~i--~~~~~ivvlNK~Dl~~ 207 (337)
T 2qm8_A 148 FDVILVETVGVGQSE-----------T--A---VADLTDFFLVLMLPGAGDELQG--IKKGI--FELADMIAVNKADDGD 207 (337)
T ss_dssp CCEEEEEECSSSSCH-----------H--H---HHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEECCSTTC
T ss_pred CCEEEEECCCCCcch-----------h--h---HHhhCCEEEEEEcCCCcccHHH--HHHHH--hccccEEEEEchhccC
Confidence 389999999986411 0 0 1134577999999864322110 00011 1246688889999764
Q ss_pred cccCCCCCchhhHHHHHHHHHhhh----cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 251 KKKNGGKRPEENLNDFQELIQGFF----QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
... ......+++...+.... .+..+++.+||+++.|+++|++.|.+.+..
T Consensus 208 ~~~----~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~~ 261 (337)
T 2qm8_A 208 GER----RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK 261 (337)
T ss_dssp CHH----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred chh----HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 211 01112233332221111 113689999999999999999999988763
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=5e-13 Score=135.96 Aligned_cols=114 Identities=17% Similarity=0.129 Sum_probs=76.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcce--------ecc------CCCCceEE--EE--EEEe---------------C
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLA--------LTS------KTPGKTQC--IN--HFRI---------------N 170 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~--------~~~------~~~~~t~~--~~--~~~~---------------~ 170 (308)
..++|+|+|.+|+|||||+++|+...... ... ...|.|.. .. .+.. +
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 34699999999999999999998742100 000 01222221 11 2221 1
Q ss_pred CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 171 DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 171 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
..+.+|||||+.+ |...+..+++.+ |++++|+|++++.+.+...+..++...++|+++|+||+|+..
T Consensus 98 ~~i~liDTPG~~d----------f~~~~~~~l~~a---D~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 98 FLINLIDSPGHVD----------FSSEVTAALRVT---DGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEECCCCCCS----------SCHHHHHHHHTC---SEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred ceEEEEECcCchh----------hHHHHHHHHHhC---CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcch
Confidence 2689999999753 333455555544 459999999999888877665666667899999999999873
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.6e-12 Score=126.82 Aligned_cols=117 Identities=13% Similarity=0.128 Sum_probs=79.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcc----e------eccC------CCCceEE--EEEEEeC-------C-CEEE
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKL----A------LTSK------TPGKTQC--INHFRIN-------D-SWYL 175 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~----~------~~~~------~~~~t~~--~~~~~~~-------~-~~~l 175 (308)
-+.+.+|+|+|..++|||||..+|+..... . .+.+ ..|.|.. ...+.+. + .+.+
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 355679999999999999999999742100 0 0111 1233332 1233332 2 5899
Q ss_pred ecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 176 VDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 176 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
+||||+.+ |..+..+....+|++++|+|+..+...+...+.+.+...++|.++++||+|....
T Consensus 90 IDTPGHvD-------------F~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 90 IDTPGHVD-------------FTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp ECCCSCTT-------------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred EeCCCCcc-------------cHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc
Confidence 99999864 3334444455566799999999999998888888888889999999999998643
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=114.66 Aligned_cols=151 Identities=17% Similarity=0.311 Sum_probs=87.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcce--eccCCCCceEEEEEEEeC--C---CEEEecCCCcccCCCchh--------
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLA--LTSKTPGKTQCINHFRIN--D---SWYLVDLPGYGYAAAPRE-------- 189 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~--~~~~~~~~t~~~~~~~~~--~---~~~liDtpG~~~~~~~~~-------- 189 (308)
.++++|+|++|+|||||+|.|++..... .....++.+.....+... . .++++|++|++.......
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 4579999999999999999999964211 112234444432222221 2 588999999875322111
Q ss_pred hhhchHHHHHHHHHhcC------C--cc-EEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCch
Q 021750 190 LRTDWDKFTKDYFLNRS------T--LV-SVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPE 260 (308)
Q Consensus 190 ~~~~~~~~~~~~~~~~~------~--~~-~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~ 260 (308)
+...+..++..+..... . ++ ++++++|+..+.+..+.++.+++. .++|+|+|+||+|....
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~--------- 191 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISK--------- 191 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCH---------
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccch---------
Confidence 11122223322211110 1 12 477788888888888888888887 68999999999998853
Q ss_pred hhHHHHHHHHHh-hhcCCCCEEEeec
Q 021750 261 ENLNDFQELIQG-FFQTAPPWIMTSS 285 (308)
Q Consensus 261 ~~~~~~~~~~~~-~~~~~~~~~~vSA 285 (308)
..+..+.+.+.. .-..+++++++|.
T Consensus 192 ~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 192 SELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 335555555554 2223466666664
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-11 Score=111.41 Aligned_cols=127 Identities=13% Similarity=0.127 Sum_probs=76.7
Q ss_pred EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCC----------CCCChhHH--HHHHH
Q 021750 165 NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS----------IPAKPIDL--EYASW 231 (308)
Q Consensus 165 ~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~----------~~~~~~~~--~l~~~ 231 (308)
..+..++ .+.+|||+|.. .++..|.+||....+ +++|+|.+ +..+..+. .+...
T Consensus 160 ~~~~~~~v~l~iwDtgGQe----------~~R~~w~~yf~~~~~---iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i 226 (327)
T 3ohm_A 160 YPFDLQSVIFRMVDVGGQR----------SERRKWIHCFENVTS---IMFLVALSEYDQVLVESDNENRMEESKALFRTI 226 (327)
T ss_dssp EEEEETTEEEEEEEECCSH----------HHHTTGGGGCSSCSE---EEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHH
T ss_pred EEEEeeceeeEEEEcCCch----------hHHHHHHHHhCCCCE---EEEEEECccccccccccccHhHHHHHHHHHHHH
Confidence 3444555 78999999943 566678888876554 89999765 22111111 11222
Q ss_pred hc---cCCCCEEEEeecCCCCCcccCC-----------C-CCchhhHHHH-HHHHHhhh---cCCCCEEEeecCCCCCHH
Q 021750 232 LG---QNQIPMTLVFTKCDKRKKKKNG-----------G-KRPEENLNDF-QELIQGFF---QTAPPWIMTSSVTNQGRD 292 (308)
Q Consensus 232 ~~---~~~~pvivV~NK~Dl~~~~~~~-----------~-~~~~~~~~~~-~~~~~~~~---~~~~~~~~vSA~~g~gi~ 292 (308)
.. ..+.|+++++||+|+...+-.. . .+..+....+ .+.+.... ...+.++++||+++.||+
T Consensus 227 ~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~ 306 (327)
T 3ohm_A 227 ITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIR 306 (327)
T ss_dssp HTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHH
T ss_pred hhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHH
Confidence 22 1579999999999987543100 0 1122223222 22222111 123567899999999999
Q ss_pred HHHHHHHHHHHH
Q 021750 293 EILLHMAQLRNY 304 (308)
Q Consensus 293 el~~~i~~~~~~ 304 (308)
++|..+.+.+-+
T Consensus 307 ~vF~~v~~~Il~ 318 (327)
T 3ohm_A 307 FVFAAVKDTILQ 318 (327)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-10 Score=102.93 Aligned_cols=126 Identities=21% Similarity=0.405 Sum_probs=72.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceec------cCCCCce--EEEEE----EEeCCCEEEecCCCcccCCCchhhhhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALT------SKTPGKT--QCINH----FRINDSWYLVDLPGYGYAAAPRELRTD 193 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~------~~~~~~t--~~~~~----~~~~~~~~liDtpG~~~~~~~~~~~~~ 193 (308)
++++|+|++|+|||||+|.|++....... .+.+.+. ..+.. ......++++|++|+............
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 58999999999999999999984321100 0111111 11111 111225899999998753322111111
Q ss_pred hHHHH----HHHHHh-----------cCCccEEEEEEeCC-CCCChhHHHHHHHhccCCCCEEEEeecCCCCCcc
Q 021750 194 WDKFT----KDYFLN-----------RSTLVSVFLLIDAS-IPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 194 ~~~~~----~~~~~~-----------~~~~~~vl~viD~~-~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~ 252 (308)
...+. ..++.. ...++++++++|.. .+....+.++..++... +++++|+||+|.....
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCHH
Confidence 11111 111111 11235688888865 77888888888888766 9999999999988643
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.6e-11 Score=108.92 Aligned_cols=126 Identities=12% Similarity=0.114 Sum_probs=78.2
Q ss_pred EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCC----------CCChhHH--HHHHHh
Q 021750 166 HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASI----------PAKPIDL--EYASWL 232 (308)
Q Consensus 166 ~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~----------~~~~~~~--~l~~~~ 232 (308)
.+.+++ .+.+|||+|. + .++.+|.+||..+.+ +++|+|.++ ..+..+. .+...+
T Consensus 155 ~~~~~~v~l~iwDtaGQ-------e---~~R~~w~~yy~~a~~---iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~ 221 (340)
T 4fid_A 155 DFVVKDIPFHLIDVGGQ-------R---SERKXWVSFFSDVDC---AIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIM 221 (340)
T ss_dssp EEESSSCEEEEEECCSC-------H---HHHHHHHTTSCSCSE---EEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHH
T ss_pred EEEeeeeeeccccCCCc-------c---cccccHHHHhccCCE---EEEEEECCccccccccccccchHHHHHHHHHHHh
Confidence 344444 7899999994 2 677889888876554 899999982 2222111 111122
Q ss_pred c---cCCCCEEEEeecCCCCCcccCCC--------CCchhhHHHHHHHHHhhh-----------c-------------CC
Q 021750 233 G---QNQIPMTLVFTKCDKRKKKKNGG--------KRPEENLNDFQELIQGFF-----------Q-------------TA 277 (308)
Q Consensus 233 ~---~~~~pvivV~NK~Dl~~~~~~~~--------~~~~~~~~~~~~~~~~~~-----------~-------------~~ 277 (308)
. ..+.|+++++||+|+...+.... .......++..+.+...| . ..
T Consensus 222 ~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (340)
T 4fid_A 222 TNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEK 301 (340)
T ss_dssp HCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CE
T ss_pred hhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcc
Confidence 1 25789999999999875321000 000012334434443333 0 13
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+.++++||++..||+.+|..+.+.+-+
T Consensus 302 iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 302 VYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 668899999999999999999887644
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-11 Score=110.28 Aligned_cols=132 Identities=17% Similarity=0.172 Sum_probs=83.8
Q ss_pred HHHHHHhcCCcc-eeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCC
Q 021750 140 SLLNSLVRRKKL-ALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS 218 (308)
Q Consensus 140 SLin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~ 218 (308)
+|+.+++.+.+. ..+.++.|.... ..+..++++.+||| .. +++.+++.|+..+ |++++|+|++
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qe----------r~~~l~~~~~~~a---d~vilV~D~~ 95 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LH----------RKNLLTKPHVANV---DQVILVVTVK 95 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CC----------CSCEETTTTEESC---CEEEEEECSS
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--cc----------ccceeeccccccC---CEEEEEEeCC
Confidence 577777766554 344555663332 22223447999999 21 2333555555544 5599999999
Q ss_pred CCC-ChhHHHHHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHH
Q 021750 219 IPA-KPIDLEYASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 219 ~~~-~~~~~~l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el 294 (308)
++. +... +..|+ ...++|+++|+||+|+.+... .+..+++.+.+.. . .+++++||++|+|++++
T Consensus 96 ~~~~s~~~--l~~~l~~~~~~~~piilv~NK~DL~~~~~------v~~~~~~~~~~~~---~-~~~~~~SAktg~gv~~l 163 (301)
T 1u0l_A 96 MPETSTYI--IDKFLVLAEKNELETVMVINKMDLYDEDD------LRKVRELEEIYSG---L-YPIVKTSAKTGMGIEEL 163 (301)
T ss_dssp TTCCCHHH--HHHHHHHHHHTTCEEEEEECCGGGCCHHH------HHHHHHHHHHHTT---T-SCEEECCTTTCTTHHHH
T ss_pred CCCCCHHH--HHHHHHHHHHCCCCEEEEEeHHHcCCchh------HHHHHHHHHHHhh---h-CcEEEEECCCCcCHHHH
Confidence 876 3332 23343 346899999999999975321 1224444444432 1 68999999999999999
Q ss_pred HHHHH
Q 021750 295 LLHMA 299 (308)
Q Consensus 295 ~~~i~ 299 (308)
|.++.
T Consensus 164 f~~l~ 168 (301)
T 1u0l_A 164 KEYLK 168 (301)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 98764
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.6e-10 Score=100.79 Aligned_cols=60 Identities=30% Similarity=0.473 Sum_probs=41.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAA 185 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~ 185 (308)
..+|+++|.||||||||+|+|.+.+. ..++..||+|+....+..+..+.++||||+.+..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~-~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI-AKTGDRPGITTSQQWVKVGKELELLDTPGILWPK 179 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC-C------------CCEEETTTEEEEECCCCCCSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce-eecCCCCCeeeeeEEEEeCCCEEEEECcCcCCCC
Confidence 45899999999999999999998753 5688899999887777777799999999998654
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-09 Score=102.00 Aligned_cols=168 Identities=18% Similarity=0.146 Sum_probs=94.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcce---eccCCCCceEEEEEEEeC--CCEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLA---LTSKTPGKTQCINHFRIN--DSWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~---~~~~~~~~t~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..++|+|++|||||||+|.|++-.... .......+++....+... ..++++|+||+..... .....+..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~------~~~~~L~~ 143 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNF------PPDTYLEK 143 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSC------CHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHH------HHHHHHHH
Confidence 379999999999999999999943211 111111111111112222 2689999999864211 22223333
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCccc--CCCC-CchhhHH-HHHHHH----Hh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKK--NGGK-RPEENLN-DFQELI----QG 272 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~--~~~~-~~~~~~~-~~~~~~----~~ 272 (308)
+ .....+..++ ++... ...++..+...+...++|+++|.||.|+.--++ ...+ ...+.+. .+.+.. .+
T Consensus 144 ~--~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 144 M--KFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp T--TGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred c--CCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 2 1122233343 77654 456667777887778899999999999752110 0000 1122222 222222 11
Q ss_pred hhcCCCCEEEeec--CCCCCHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSS--VTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 273 ~~~~~~~~~~vSA--~~g~gi~el~~~i~~~~~ 303 (308)
.......+|.+|+ ..+.|++++.+.+.+.+.
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 1012357899999 677789999999987653
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-09 Score=100.91 Aligned_cols=86 Identities=19% Similarity=0.235 Sum_probs=57.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC------------------CEEEecCCCcccCC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND------------------SWYLVDLPGYGYAA 185 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~------------------~~~liDtpG~~~~~ 185 (308)
.+|+|+|.+|||||||+|+|++... +.++..|++|.. ...+.+.+ .+.++|+||+....
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~~~-a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKSVL-GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTT-TSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc-ccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 4899999999999999999999652 356777776654 23344432 47899999987643
Q ss_pred Cc-hhhhhchHHHHHHHHHhcCCccEEEEEEeCCC
Q 021750 186 AP-RELRTDWDKFTKDYFLNRSTLVSVFLLIDASI 219 (308)
Q Consensus 186 ~~-~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~ 219 (308)
.. ..++.. ++ .+ ...++.+++|+|+..
T Consensus 100 s~~e~L~~~---fl-~~---ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNA---FL-SH---VRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHH---HH-HH---HTTCSEEEEEEECCC
T ss_pred cHHHHHHHH---HH-HH---HHHHHHHHHHHhccc
Confidence 22 222222 22 22 234566999999864
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-10 Score=107.12 Aligned_cols=86 Identities=22% Similarity=0.178 Sum_probs=43.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeC------------------CCEEEecCCCcccCC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIN------------------DSWYLVDLPGYGYAA 185 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~------------------~~~~liDtpG~~~~~ 185 (308)
.+|+|+|.||||||||+|+|++.+. .++..|++|... ..+.+. ..+.+|||||+....
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~--~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQA--SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc--cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 5899999999999999999999753 456666666532 223322 248999999997633
Q ss_pred C-chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCC
Q 021750 186 A-PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIP 220 (308)
Q Consensus 186 ~-~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~ 220 (308)
. +..++. .+..+++.+ |++++|+|+++.
T Consensus 101 s~~~glg~----~~l~~ir~a---D~Il~VvD~~~~ 129 (396)
T 2ohf_A 101 HNGQGLGN----AFLSHISAC---DGIFHLTRAFED 129 (396)
T ss_dssp ------CC----HHHHHHHTS---SSEEEEEEC---
T ss_pred chhhHHHH----HHHHHHHhc---CeEEEEEecCCC
Confidence 2 222222 222344444 448999999753
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-10 Score=105.39 Aligned_cols=131 Identities=12% Similarity=0.078 Sum_probs=81.2
Q ss_pred eEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCC-------hhH-HHHHHH
Q 021750 161 TQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAK-------PID-LEYASW 231 (308)
Q Consensus 161 t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~-------~~~-~~l~~~ 231 (308)
+.....+.+++ .+.+|||+|.. .++..|.+||...+ ++++|+|.++..+ ... .+...|
T Consensus 182 Gi~~~~~~~~~~~l~iwDt~GQe----------~~r~~w~~yf~~a~---~iIfV~dls~~d~~l~ed~~~nr~~e~~~~ 248 (353)
T 1cip_A 182 GIVETHFTFKDLHFKMFDVGGQR----------SERKKWIHCFEGVT---AIIFCVALSDYDLVLAEDEEMNRMHESMKL 248 (353)
T ss_dssp SEEEEEEEETTEEEEEEEECCSG----------GGGGGGGGGCTTCS---EEEEEEEGGGGGCEETTEEEEEHHHHHHHH
T ss_pred ceEEEEEeeCCeeEEEEeCCCch----------hhhHHHHHHHhcCC---EEEEEEECccccccccccchhhhHHHHHHH
Confidence 33444555555 79999999953 45557778776654 4999999987432 111 112222
Q ss_pred hc-------cCCCCEEEEeecCCCCCcccC-----------CCCCchhhHHHHHHH-HHhhh----cCCCCEEEeecCCC
Q 021750 232 LG-------QNQIPMTLVFTKCDKRKKKKN-----------GGKRPEENLNDFQEL-IQGFF----QTAPPWIMTSSVTN 288 (308)
Q Consensus 232 ~~-------~~~~pvivV~NK~Dl~~~~~~-----------~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~vSA~~g 288 (308)
+. ..+.|+++|+||+|+...... ...+..+....+... +.... ...+.++++||+++
T Consensus 249 ~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~ 328 (353)
T 1cip_A 249 FDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT 328 (353)
T ss_dssp HHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH
T ss_pred HHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCc
Confidence 21 157999999999998643210 001223334333331 11111 23467899999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 021750 289 QGRDEILLHMAQLRNY 304 (308)
Q Consensus 289 ~gi~el~~~i~~~~~~ 304 (308)
+||+++|+++.+.+..
T Consensus 329 ~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 329 KNVQFVFDAVTDVIIK 344 (353)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999999987754
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.00 E-value=4.9e-10 Score=107.32 Aligned_cols=159 Identities=16% Similarity=0.134 Sum_probs=88.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHh------cCCcceeccCCC----------------CceEEEE---------------E
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLV------RRKKLALTSKTP----------------GKTQCIN---------------H 166 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~------~~~~~~~~~~~~----------------~~t~~~~---------------~ 166 (308)
....|+++|.+||||||++++|. +.+ ...++..+ +...... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~k-VllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWK-TCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCC-EEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe-EEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 34589999999999999999999 432 22222211 0111000 0
Q ss_pred EE-eCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCE-EEEee
Q 021750 167 FR-INDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPM-TLVFT 244 (308)
Q Consensus 167 ~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pv-ivV~N 244 (308)
+. .+..++++||||..... ..+......+. . ....+.+++|+|+..+... ......+.+ ..|+ .+|+|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~--~~l~~el~~~~----~-~i~pd~vllVvDa~~g~~~--~~~a~~~~~-~~~i~gvVlN 248 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQE--DSLFEEMLQVA----N-AIQPDNIVYVMDASIGQAC--EAQAKAFKD-KVDVASVIVT 248 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTC--HHHHHHHHHHH----H-HHCCSEEEEEEETTCCTTH--HHHHHHHHH-HHCCCCEEEE
T ss_pred HHHCCCcEEEEeCCCCcccc--hhHHHHHHHHH----h-hhcCceEEEEEeccccccH--HHHHHHHHh-hcCceEEEEe
Confidence 01 12379999999975311 11111111111 1 1134668999999876542 233333333 2675 89999
Q ss_pred cCCCCCcccCCCCCchhhHHHHHHHHHh---------h---hcCCCCEEEeecCCCCC-HHHHHHHHHHH
Q 021750 245 KCDKRKKKKNGGKRPEENLNDFQELIQG---------F---FQTAPPWIMTSSVTNQG-RDEILLHMAQL 301 (308)
Q Consensus 245 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~vSA~~g~g-i~el~~~i~~~ 301 (308)
|+|...... . .-.+...++. . +....+.+++|+..|.| +++|++++.+.
T Consensus 249 K~D~~~~~g-------~-~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 249 KLDGHAKGG-------G-ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CTTSCCCCT-------H-HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred CCccccchH-------H-HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 999874321 1 1122222210 0 01123445689999999 99999998765
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=8.8e-10 Score=101.60 Aligned_cols=131 Identities=15% Similarity=0.176 Sum_probs=75.4
Q ss_pred eEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC----------ChhHH--H
Q 021750 161 TQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA----------KPIDL--E 227 (308)
Q Consensus 161 t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~----------~~~~~--~ 227 (308)
+.....+.+++ .+.+|||+|.. .++..+.+||... +++++|+|.++.. +..+. .
T Consensus 190 Gi~~~~~~~~~~~l~i~Dt~Gq~----------~~r~~w~~~f~~~---~~iIfv~dls~~dq~l~ed~~~n~~~es~~~ 256 (362)
T 1zcb_A 190 GIHEYDFEIKNVPFKMVDVGGQR----------SERKRWFECFDSV---TSILFLVSSSEFDQVLMEDRQTNRLTESLNI 256 (362)
T ss_dssp SEEEEEEEETTEEEEEEEECC-----------------CTTSCTTC---CEEEEEEETTCTTCEETTEEEEEHHHHHHHH
T ss_pred ceEEEEeeeCCeEEEEEeccchh----------hhhhhHHHHhCCC---CEEEEEEECccccccccccccccHHHHHHHH
Confidence 33344555555 79999999953 4555677777654 4599999999732 22211 1
Q ss_pred HHHHhc---cCCCCEEEEeecCCCCCcccC-----------CCC-CchhhHHHHH-HHHHhhh----cCCCCEEEeecCC
Q 021750 228 YASWLG---QNQIPMTLVFTKCDKRKKKKN-----------GGK-RPEENLNDFQ-ELIQGFF----QTAPPWIMTSSVT 287 (308)
Q Consensus 228 l~~~~~---~~~~pvivV~NK~Dl~~~~~~-----------~~~-~~~~~~~~~~-~~~~~~~----~~~~~~~~vSA~~ 287 (308)
+..+.. ..+.|+|+++||+|+...+.. ... +..+....+. +.+.... ...+.++++||++
T Consensus 257 ~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d 336 (362)
T 1zcb_A 257 FETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAIN 336 (362)
T ss_dssp HHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTC
T ss_pred HHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCC
Confidence 112222 157899999999998643210 000 1223333322 1211111 1246789999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 021750 288 NQGRDEILLHMAQLRNY 304 (308)
Q Consensus 288 g~gi~el~~~i~~~~~~ 304 (308)
++||+++|+++.+.+..
T Consensus 337 ~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 337 TENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH
Confidence 99999999999887654
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.3e-09 Score=97.45 Aligned_cols=118 Identities=12% Similarity=0.084 Sum_probs=71.7
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCC----------CCCChhHHHHHHHh----c---c
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS----------IPAKPIDLEYASWL----G---Q 234 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~----------~~~~~~~~~l~~~~----~---~ 234 (308)
.+.+|||+|.. .++.++.+||...+ ++++|+|.+ +..+..+ ...|+ . .
T Consensus 184 ~l~iwDtaGQe----------~~r~~~~~y~~~~~---~iI~v~dis~ydq~l~e~~~~~s~~~--~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 184 VYRLFDVGGQR----------NERRKWIHLFEGVT---AVIFCAAISEYDQTLFEDEQKNRMME--TKELFDWVLKQPCF 248 (354)
T ss_dssp EEEEEEECCST----------TGGGGTGGGCTTEE---EEEEEEEGGGTTCBCSSCTTSBHHHH--HHHHHHHHHTCGGG
T ss_pred eeEEEECCCch----------hhhHHHHHHhCCCC---EEEEEEECcccccccccccchhHHHH--HHHHHHHHHhcccc
Confidence 58999999953 45567777776554 589999987 2222222 22222 1 2
Q ss_pred CCCCEEEEeecCCCCCcccCCCC-----------------CchhhHHHH-HHHHHhh---h------cCCCCEEEeecCC
Q 021750 235 NQIPMTLVFTKCDKRKKKKNGGK-----------------RPEENLNDF-QELIQGF---F------QTAPPWIMTSSVT 287 (308)
Q Consensus 235 ~~~pvivV~NK~Dl~~~~~~~~~-----------------~~~~~~~~~-~~~~~~~---~------~~~~~~~~vSA~~ 287 (308)
.+.|+++|+||+|+...+..... ...+....+ .+.+... . .....++++||++
T Consensus 249 ~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d 328 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALD 328 (354)
T ss_dssp SSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTC
T ss_pred CCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeec
Confidence 57899999999998643221000 001222222 2221111 0 1123468999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 021750 288 NQGRDEILLHMAQLRNY 304 (308)
Q Consensus 288 g~gi~el~~~i~~~~~~ 304 (308)
++||+++|+++.+.+.+
T Consensus 329 ~~nV~~vF~~v~~~I~~ 345 (354)
T 2xtz_A 329 QKLVKKTFKLVDETLRR 345 (354)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH
Confidence 99999999999887654
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=6.2e-09 Score=96.93 Aligned_cols=126 Identities=12% Similarity=0.141 Sum_probs=77.9
Q ss_pred EEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCC----------CCChhHHHHHHHh
Q 021750 164 INHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASI----------PAKPIDLEYASWL 232 (308)
Q Consensus 164 ~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~----------~~~~~~~~l~~~~ 232 (308)
...+.+++ .+.+|||+|.. .++..+.+||..++ ++++|+|.++ ..+..+ ...|+
T Consensus 209 ~~~~~~~~v~l~iwDtaGQe----------~~r~~w~~yf~~a~---~iIfV~dis~ydq~l~ed~~~ns~~e--~~~~~ 273 (402)
T 1azs_C 209 ETKFQVDKVNFHMFDVGGQR----------DERRKWIQCFNDVT---AIIFVVASSSYNMVIREDNQTNRLQE--ALNLF 273 (402)
T ss_dssp EEEEEETTEEEEEEEECCSG----------GGGGGGGGGTTTCC---EEEEEEETTGGGCBCTTTSCSBHHHH--HHHHH
T ss_pred EEEeecCCccceecccchhh----------hhhhhhHhhccCCC---EEEEEEECcccccccccccccchHHH--HHHHH
Confidence 34455555 78999999953 55667888887655 4899999987 322222 22332
Q ss_pred c-------cCCCCEEEEeecCCCCCccc---CC----------------------CC-CchhhHHHHH-HHHHhhh----
Q 021750 233 G-------QNQIPMTLVFTKCDKRKKKK---NG----------------------GK-RPEENLNDFQ-ELIQGFF---- 274 (308)
Q Consensus 233 ~-------~~~~pvivV~NK~Dl~~~~~---~~----------------------~~-~~~~~~~~~~-~~~~~~~---- 274 (308)
. ..+.|++||+||+|+...+. .. .. ...+....+. +.+....
T Consensus 274 ~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~ 353 (402)
T 1azs_C 274 KSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASG 353 (402)
T ss_dssp HHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhcccc
Confidence 2 14689999999999864321 00 00 0012233331 1111111
Q ss_pred --cCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 275 --QTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 275 --~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
...+.++++||++++||+++|.++.+.+.+
T Consensus 354 ~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 354 DGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp TTSSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCcccEEEEEEeecCcCHHHHHHHHHHHHHH
Confidence 013457899999999999999999887654
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.4e-09 Score=88.75 Aligned_cols=116 Identities=9% Similarity=-0.061 Sum_probs=66.9
Q ss_pred EEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhH-HHH---HHHhcc----CCCCEEEEee
Q 021750 173 WYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPID-LEY---ASWLGQ----NQIPMTLVFT 244 (308)
Q Consensus 173 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~-~~l---~~~~~~----~~~pvivV~N 244 (308)
+....+|| .+...+++ .++.+|++||.+.++ +|||+|+++...... .++ ...+.+ .+.|++|.+|
T Consensus 98 ~~~~~~~~-~~~~GGQ~---klRplWr~Yy~~Tdg---lIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlAN 170 (227)
T 3l82_B 98 MFSRHNEG-DDQQGSRY---SVIPQIQKVCEVVDG---FIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSC 170 (227)
T ss_dssp -----------------------CCHHHHHHHCSE---EEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEE
T ss_pred cccccCCC-ccccCcHH---HHHHHHHHHhcCCCE---EEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeC
Confidence 44455665 22233444 677899999988766 899999987643222 233 333432 5789999999
Q ss_pred cC-CCCCcccCCCCCchhhHHHHHHHHHh-hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 245 KC-DKRKKKKNGGKRPEENLNDFQELIQG-FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 245 K~-Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
|. |+.... . ..++.+.++- .....+.+..|||++|+|+.|-++||.+.+..
T Consensus 171 KqqDlp~Am------s---~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 171 ISQGDVKRM------P---CFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp ESSTTSCBC------C---HHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred CCcCccCCC------C---HHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 95 676543 2 2333333321 12345788999999999999999999876643
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.8e-09 Score=95.20 Aligned_cols=59 Identities=29% Similarity=0.529 Sum_probs=42.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAA 185 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~ 185 (308)
.+++++|.||||||||+|+|.+... ..+...+|+|+....+..+..+.+|||||+.+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA-SSVGAQPGITKGIQWFSLENGVKILDTPGILYKN 158 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTTSCEEESSCEECCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc-cccCCCCCCccceEEEEeCCCEEEEECCCcccCc
Confidence 5999999999999999999998754 4567888888876666667789999999998643
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.80 E-value=3.2e-08 Score=88.13 Aligned_cols=94 Identities=18% Similarity=0.235 Sum_probs=71.5
Q ss_pred HHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 197 FTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 197 ~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
..++.......+|+|+.|+|+..+.+..+..+.+++ .++|+++|+||+|+.+. +..+.+.+.+.. .
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~---------~~~~~~~~~~~~---~ 78 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADA---------AVTQQWKEHFEN---Q 78 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCH---------HHHHHHHHHHHT---T
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCH---------HHHHHHHHHHHh---c
Confidence 445555556667889999999998877665666776 47999999999999852 234455555532 2
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+.+++++||+++.|++++++.+.+.+..
T Consensus 79 g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 79 GIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp TCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred CCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 3689999999999999999999888764
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.8e-08 Score=90.26 Aligned_cols=100 Identities=13% Similarity=0.072 Sum_probs=66.0
Q ss_pred chHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 193 DWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
+|.+++++++...+ ++++|+|++++......++.+++ .++|+++|+||+|+.+... ..+.++++......
T Consensus 58 ~f~~~l~~i~~~~~---~il~VvD~~d~~~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~-----~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 58 DFLRILNGIGKSDA---LVVKIVDIFDFNGSWLPGLHRFV--GNNKVLLVGNKADLIPKSV-----KHDKVKHWMRYSAK 127 (368)
T ss_dssp HHHHHHHHHHHSCC---EEEEEEETTSHHHHCCTTHHHHS--SSSCEEEEEECGGGSCTTS-----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCc---EEEEEEECCCCcccHHHHHHHHh--CCCcEEEEEEChhcCCccc-----CHHHHHHHHHHHHH
Confidence 67888888776543 48999999875322222333333 3799999999999975431 23344444333222
Q ss_pred hhc-CCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 273 FFQ-TAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 273 ~~~-~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+ ...+++++||++|+|++++++.|.+..
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 211 113789999999999999999997654
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.65 E-value=8.8e-08 Score=88.49 Aligned_cols=100 Identities=12% Similarity=0.062 Sum_probs=68.4
Q ss_pred chHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHH-HH
Q 021750 193 DWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQEL-IQ 271 (308)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~ 271 (308)
.|.+++.+++...+ ++++|+|++++......++.+++. ++|+++|+||+|+.+... ..+.++++... +.
T Consensus 60 ~f~~~L~~~~~~~~---lil~VvD~~d~~~s~~~~l~~~l~--~~piilV~NK~DLl~~~~-----~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 60 DFLSMLHRIGESKA---LVVNIVDIFDFNGSFIPGLPRFAA--DNPILLVGNKADLLPRSV-----KYPKLLRWMRRMAE 129 (369)
T ss_dssp HHHHHHHHHHHHCC---EEEEEEETTCSGGGCCSSHHHHCT--TSCEEEEEECGGGSCTTC-----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCc---EEEEEEECCCCCCchhhHHHHHhC--CCCEEEEEEChhcCCCcc-----CHHHHHHHHHHHHH
Confidence 67788888765543 499999999876544444455543 799999999999986431 23334444332 32
Q ss_pred hhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 272 GFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 272 ~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.......+++.+||++|+|++++++.+.+..
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 2211113689999999999999999997754
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.64 E-value=2.9e-07 Score=90.41 Aligned_cols=79 Identities=20% Similarity=0.293 Sum_probs=48.9
Q ss_pred CEEEecCCCcccC-CC--chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCC-CChhHHHHHHHhccCCCCEEEEeecCC
Q 021750 172 SWYLVDLPGYGYA-AA--PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIP-AKPIDLEYASWLGQNQIPMTLVFTKCD 247 (308)
Q Consensus 172 ~~~liDtpG~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~-~~~~~~~l~~~~~~~~~pvivV~NK~D 247 (308)
.+.++|.||+... .. .......+..++..|+.....+ ++.+++.+.. .......+...+...+.+.|+|+||+|
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~i--il~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETI--SLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCC--EEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCC--ceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 5899999998753 11 2222335556777766555443 6666665533 233345667777777899999999999
Q ss_pred CCCcc
Q 021750 248 KRKKK 252 (308)
Q Consensus 248 l~~~~ 252 (308)
+....
T Consensus 226 lv~~g 230 (608)
T 3szr_A 226 LVDKG 230 (608)
T ss_dssp GSSSS
T ss_pred hcCcc
Confidence 98643
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=7.2e-08 Score=85.20 Aligned_cols=100 Identities=7% Similarity=-0.136 Sum_probs=69.8
Q ss_pred chHHHHHHHHHhcCCccEEEEEEeCCCCCChhH-HH---HHHHhc----cCCCCEEEEeec-CCCCCcccCCCCCchhhH
Q 021750 193 DWDKFTKDYFLNRSTLVSVFLLIDASIPAKPID-LE---YASWLG----QNQIPMTLVFTK-CDKRKKKKNGGKRPEENL 263 (308)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~-~~---l~~~~~----~~~~pvivV~NK-~Dl~~~~~~~~~~~~~~~ 263 (308)
.++.+|++||.+.++ +|||+|+++...... .+ +...+. ..+.|++|.+|| -|+..... .
T Consensus 199 ~lRplWr~Yy~~tdg---lIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams---------~ 266 (312)
T 3l2o_B 199 SVIPQIQKVCEVVDG---FIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP---------C 266 (312)
T ss_dssp CCCHHHHHHHHHCSE---EEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC---------H
T ss_pred HHHHHHHHHhcCCCE---EEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCC---------H
Confidence 678899999988766 899999987754322 12 223332 158999999997 58865432 2
Q ss_pred HHHHHHHHh-hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 264 NDFQELIQG-FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 264 ~~~~~~~~~-~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.++.+.++- .....+.+..|||++|+|+.|-++||.+.+..
T Consensus 267 ~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 267 FYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp HHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred HHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 333333321 12345778999999999999999999987654
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=7.2e-08 Score=93.89 Aligned_cols=101 Identities=23% Similarity=0.214 Sum_probs=55.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcc-eeccCCCCceEEEEEEE------eCCCEEEecCCCcccCCCchhhhhchH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKL-ALTSKTPGKTQCINHFR------INDSWYLVDLPGYGYAAAPRELRTDWD 195 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~-~~~~~~~~~t~~~~~~~------~~~~~~liDtpG~~~~~~~~~~~~~~~ 195 (308)
.....|+|+|.||||||||+|+|++.... .....+.++|.....+. .+..+.++||||+.+...+.. .....
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~-~~~~~ 114 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDN-QNDSW 114 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCC-TTHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccch-hHHHH
Confidence 34568999999999999999999997531 11111123333332221 123799999999975322111 00111
Q ss_pred HHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHH
Q 021750 196 KFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYAS 230 (308)
Q Consensus 196 ~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~ 230 (308)
.+....+. . -++|+|+....+..+..+..
T Consensus 115 ~fala~ll--s----s~lv~n~~~~i~~~dl~~l~ 143 (592)
T 1f5n_A 115 IFALAVLL--S----STFVYNSIGTINQQAMDQLY 143 (592)
T ss_dssp HHHHHHHH--C----SEEEEEEESCSSHHHHHTTH
T ss_pred HHHHHHHh--c----CeEEEECCCCccHHHHHHHH
Confidence 11111111 1 15677777777776654433
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.6e-07 Score=82.99 Aligned_cols=85 Identities=15% Similarity=0.214 Sum_probs=57.5
Q ss_pred CCccEEEEEEeCCCCC-ChhHH-HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEe
Q 021750 206 STLVSVFLLIDASIPA-KPIDL-EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~-~~~~~-~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 283 (308)
..+|++++|+|++++. +.... .+...+...++|+++|+||+|+.+..+ .+..+++.+.+... +.+++++
T Consensus 78 ~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~------v~~~~~~~~~~~~~---g~~~~~~ 148 (302)
T 2yv5_A 78 ANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEE------KKELERWISIYRDA---GYDVLKV 148 (302)
T ss_dssp ESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHH------HHHHHHHHHHHHHT---TCEEEEC
T ss_pred HhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccc------cHHHHHHHHHHHHC---CCeEEEE
Confidence 4456799999999875 44321 233334457899999999999975320 01133444444322 3689999
Q ss_pred ecCCCCCHHHHHHHHH
Q 021750 284 SSVTNQGRDEILLHMA 299 (308)
Q Consensus 284 SA~~g~gi~el~~~i~ 299 (308)
||++|+|++++++.+.
T Consensus 149 SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 149 SAKTGEGIDELVDYLE 164 (302)
T ss_dssp CTTTCTTHHHHHHHTT
T ss_pred ECCCCCCHHHHHhhcc
Confidence 9999999999998764
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.1e-07 Score=85.55 Aligned_cols=144 Identities=19% Similarity=0.193 Sum_probs=77.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc-----CCcceeccCC----------------CCceEEEE---------------EEE
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVR-----RKKLALTSKT----------------PGKTQCIN---------------HFR 168 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~-----~~~~~~~~~~----------------~~~t~~~~---------------~~~ 168 (308)
...|+++|.+||||||++..|.. +..+..+... .+...... ...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999974 1122211111 11111100 000
Q ss_pred e-CCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCC
Q 021750 169 I-NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCD 247 (308)
Q Consensus 169 ~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~D 247 (308)
. +..++++||||.... ..++-.++..+ ......+.+++|+|+..+... ......+.+.-.+..+|+||+|
T Consensus 180 ~~~~DvVIIDTaGrl~~--d~~lm~el~~i-----~~~~~pd~vlLVvDA~~gq~a--~~~a~~f~~~~~i~gVIlTKlD 250 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKE--DKALIEEMKQI-----SNVIHPHEVILVIDGTIGQQA--YNQALAFKEATPIGSIIVTKLD 250 (443)
T ss_dssp HTTCSEEEEECCCCSSC--CHHHHHHHHHH-----HHHHCCSEEEEEEEGGGGGGH--HHHHHHHHHSCTTEEEEEECCS
T ss_pred hCCCCEEEEECCCcccc--hHHHHHHHHHH-----HHhhcCceEEEEEeCCCchhH--HHHHHHHHhhCCCeEEEEECCC
Confidence 0 137999999996431 12211111111 111223569999999875332 2334444444456679999999
Q ss_pred CCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHH
Q 021750 248 KRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDE 293 (308)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~e 293 (308)
..... ......... .+.|+.+++. |+++++
T Consensus 251 ~~~~g-----------G~~ls~~~~---~g~PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 251 GSAKG-----------GGALSAVAA---TGAPIKFIGT--GEKIDD 280 (443)
T ss_dssp SCSSH-----------HHHHHHHHT---TCCCEEEEEC--SSSTTC
T ss_pred Ccccc-----------cHHHHHHHH---HCCCEEEEEc--CCChHH
Confidence 86432 112222221 2478888886 666543
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.47 E-value=1.8e-07 Score=88.13 Aligned_cols=115 Identities=20% Similarity=0.205 Sum_probs=64.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC-----CcceeccCCC------------------------CceEEE--------EEE
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR-----KKLALTSKTP------------------------GKTQCI--------NHF 167 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~-----~~~~~~~~~~------------------------~~t~~~--------~~~ 167 (308)
...|+++|.+||||||+++.|... .....++..+ +++.+. ..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 347999999999999999999873 1111111110 011110 001
Q ss_pred EeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCC-C-EEEEeec
Q 021750 168 RINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQI-P-MTLVFTK 245 (308)
Q Consensus 168 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~-p-vivV~NK 245 (308)
.+..++++||||.... ... +...+.. +......+.+++|+|+..+.. .......+.. .. | ..+|+||
T Consensus 179 -~~~D~vIIDT~G~~~~--~~~----l~~~l~~-i~~~~~~d~vllVvda~~g~~--~~~~~~~~~~-~~~~i~gvVlnK 247 (432)
T 2v3c_C 179 -KKADVLIIDTAGRHKE--EKG----LLEEMKQ-IKEITNPDEIILVIDGTIGQQ--AGIQAKAFKE-AVGEIGSIIVTK 247 (432)
T ss_dssp -SSCSEEEEECCCSCSS--HHH----HHHHHHH-TTSSSCCSEEEEEEEGGGGGG--HHHHHHHHHT-TSCSCEEEEEEC
T ss_pred -hCCCEEEEcCCCCccc--cHH----HHHHHHH-HHHHhcCcceeEEeeccccHH--HHHHHHHHhh-cccCCeEEEEeC
Confidence 1237999999997531 111 1111111 222234577999999976542 2222333332 35 5 8899999
Q ss_pred CCCCC
Q 021750 246 CDKRK 250 (308)
Q Consensus 246 ~Dl~~ 250 (308)
+|...
T Consensus 248 ~D~~~ 252 (432)
T 2v3c_C 248 LDGSA 252 (432)
T ss_dssp SSSCS
T ss_pred CCCcc
Confidence 99763
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.8e-07 Score=81.08 Aligned_cols=81 Identities=10% Similarity=0.040 Sum_probs=58.5
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
.....+|+|+.|+|+..+....+..+. ++ ++|.++|+||+|+.+. +..+.+.+.+... +.++ .
T Consensus 17 ~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~---------~~~~~~~~~~~~~---g~~v-~ 79 (262)
T 3cnl_A 17 DLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIADE---------KTTKKWVEFFKKQ---GKRV-I 79 (262)
T ss_dssp HHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSCH---------HHHHHHHHHHHHT---TCCE-E
T ss_pred HHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCCH---------HHHHHHHHHHHHc---CCeE-E
Confidence 444566789999999988766543333 33 8999999999999853 2244555555432 3567 9
Q ss_pred eecCCCCCHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~ 300 (308)
+||+++.|++++++.+.+
T Consensus 80 iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 80 TTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ECCTTSCHHHHHHHHCCC
T ss_pred EECCCCcCHHHHHHHHHH
Confidence 999999999999887654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.25 E-value=2.3e-06 Score=80.35 Aligned_cols=145 Identities=21% Similarity=0.126 Sum_probs=75.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC-----Ccceecc----------------CCCCceEEEE---------------EEE
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR-----KKLALTS----------------KTPGKTQCIN---------------HFR 168 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~-----~~~~~~~----------------~~~~~t~~~~---------------~~~ 168 (308)
..-|+++|.+||||||++..|... ..+..+. ...+...... ...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 347899999999999999999731 1111111 1111111100 000
Q ss_pred e-CCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCC
Q 021750 169 I-NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCD 247 (308)
Q Consensus 169 ~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~D 247 (308)
. +..++++||||.........+..+...+. ... ..+.+++|+|+..+... ......+.+.-.+..||+||+|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~----~~~-~pd~vlLVlDa~~gq~a--~~~a~~f~~~~~~~gVIlTKlD 249 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMY----DVL-KPDDVILVIDASIGQKA--YDLASRFHQASPIGSVIITKMD 249 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHH----HHH-CCSEEEEEEEGGGGGGG--HHHHHHHHHHCSSEEEEEECGG
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHH----Hhh-CCcceEEEEeCccchHH--HHHHHHHhcccCCcEEEEeccc
Confidence 0 23689999999532001111111211121 111 22458999999865332 2334444433456789999999
Q ss_pred CCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHH
Q 021750 248 KRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRD 292 (308)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~ 292 (308)
..... ...-.+.... +.|+.+++. |++++
T Consensus 250 ~~a~~--------G~als~~~~~------g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 250 GTAKG--------GGALSAVVAT------GATIKFIGT--GEKID 278 (433)
T ss_dssp GCSCH--------HHHHHHHHHH------TCEEEEEEC--CSSSS
T ss_pred ccccc--------hHHHHHHHHH------CCCEEEEEC--CCChH
Confidence 76421 1122222222 378888886 66653
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.97 E-value=1e-05 Score=72.32 Aligned_cols=145 Identities=23% Similarity=0.178 Sum_probs=73.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC-----CcceeccCCC----------------CceEEE---------------EEEE-
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR-----KKLALTSKTP----------------GKTQCI---------------NHFR- 168 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~-----~~~~~~~~~~----------------~~t~~~---------------~~~~- 168 (308)
..|+++|.+|+||||++..|... .........+ +..... ....
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~ 178 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLS 178 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 36889999999999999999741 1111111110 110000 0001
Q ss_pred eCCCEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCC
Q 021750 169 INDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCD 247 (308)
Q Consensus 169 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~D 247 (308)
.+..++++||||.........+-.+ +... ......+.+++|+|+..+. ...+....+.. ..+ ..+|+||+|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~e----l~~i-~~~~~~d~vllVvda~~g~--~~~~~~~~~~~-~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEE----MKNI-YEAIKPDEVTLVIDASIGQ--KAYDLASKFNQ-ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHH----HHHH-HHHHCCSEEEEEEEGGGGG--GHHHHHHHHHH-TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHH----HHHH-HHHhcCCEEEEEeeCCchH--HHHHHHHHHHh-hCCCCEEEEeCCC
Confidence 1227999999996530011111001 1111 1112345689999997542 22223333333 356 778999999
Q ss_pred CCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHH
Q 021750 248 KRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el 294 (308)
.... ......... . ...|+.+++ +|++++++
T Consensus 251 ~~~~-----------~g~~~~~~~-~--~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 251 GTAK-----------GGGALSAVA-A--TGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp GCTT-----------HHHHHHHHH-T--TTCCEEEEE--CSSSTTCE
T ss_pred CCcc-----------hHHHHHHHH-H--HCcCEEEEe--CCCChhhc
Confidence 7532 112222222 1 237788877 57777654
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.95 E-value=9.9e-06 Score=74.18 Aligned_cols=121 Identities=21% Similarity=0.263 Sum_probs=62.0
Q ss_pred HHHhhcCeEEcCCCCCcCCCchhhHHHHh-----CCCe--EEEeecccchhhh-------hHHHhhcccCC-CCCCC---
Q 021750 61 HVAISLEKLFVPPETEVSIDDSSLSTRIL-----KGSN--IVLSKYARDAQVA-------QAEFVKSSVRT-EDCPS--- 122 (308)
Q Consensus 61 ~~~~~~~~i~v~~gt~~~~~~~~~~~~~~-----~~~~--i~~~~~~~~~~~~-------~~~f~~s~~~~-~~~~~--- 122 (308)
.+++++|.+++++...-....+ .++..+ .+.. |+++|.+...... ...|....... .-.+.
T Consensus 126 ~i~anvD~v~iv~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~ 204 (358)
T 2rcn_A 126 PIAANIDQIVIVSAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQD 204 (358)
T ss_dssp EEEECCCEEEEEEESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTB
T ss_pred HHHhcCCEEEEEEeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCc
Confidence 4579999988888765333322 344433 3444 6667766422111 11222111110 00001
Q ss_pred ---------CCCCeEEEEcCCCCCHHHHHHHHhcCCc-ce--eccCCCC----ceEEEEEEEeCCCEEEecCCCccc
Q 021750 123 ---------DGLPEFALVGRSNVGKSSLLNSLVRRKK-LA--LTSKTPG----KTQCINHFRINDSWYLVDLPGYGY 183 (308)
Q Consensus 123 ---------~~~~~I~lvG~~~vGKSSLin~l~~~~~-~~--~~~~~~~----~t~~~~~~~~~~~~~liDtpG~~~ 183 (308)
.+ -.++|+|++|||||||+|.|++... .. .+....| ++.......+.....++|+||+.+
T Consensus 205 gl~~L~~~~~G-~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEALTG-RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHHHTT-SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHhcCC-CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 12 2799999999999999999998643 11 1111112 222222333444556899999754
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.81 E-value=1.2e-05 Score=72.15 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=59.2
Q ss_pred cCCccEEEEEEeCCCCCChhHHHHHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021750 205 RSTLVSVFLLIDASIPAKPIDLEYASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~~~~~l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
...+|.+++|+|+..+....+ .+.+++ ...++|.++|+||+|+.+... ..+.++.+.+.+... +.+++
T Consensus 84 ~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~-----~~~~~~~~~~~y~~~---g~~v~ 154 (307)
T 1t9h_A 84 ICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQD-----TEDTIQAYAEDYRNI---GYDVY 154 (307)
T ss_dssp EECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHH-----HHHHHHHHHHHHHHH---TCCEE
T ss_pred HHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhh-----hHHHHHHHHHHHHhC---CCeEE
Confidence 455678999999997766555 445554 357899999999999986320 002355565555432 36899
Q ss_pred EeecCCCCCHHHHHHH
Q 021750 282 MTSSVTNQGRDEILLH 297 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~ 297 (308)
.+||.++.|+++|++.
T Consensus 155 ~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 155 LTSSKDQDSLADIIPH 170 (307)
T ss_dssp ECCHHHHTTCTTTGGG
T ss_pred EEecCCCCCHHHHHhh
Confidence 9999999998887654
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00013 Score=66.13 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
.-|+++|++||||||+++.|.+
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999987
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00015 Score=68.17 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
...-|+|+|.+++|||+|+|+|++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhh
Confidence 345799999999999999999986
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.57 E-value=1.9e-05 Score=70.82 Aligned_cols=124 Identities=21% Similarity=0.237 Sum_probs=62.6
Q ss_pred CCchHHHHhhcCeEEcC-CCCCcCCCchhhHHHHh-----CCCe--EEEeecccchh-h-----hh-HHHhhc-ccC---
Q 021750 56 PEPEPHVAISLEKLFVP-PETEVSIDDSSLSTRIL-----KGSN--IVLSKYARDAQ-V-----AQ-AEFVKS-SVR--- 116 (308)
Q Consensus 56 ~~~~~~~~~~~~~i~v~-~gt~~~~~~~~~~~~~~-----~~~~--i~~~~~~~~~~-~-----~~-~~f~~s-~~~--- 116 (308)
..+..+.++++|.++++ +........+ .+++.+ .+.. |+++|.+.... . .+ ..++.. ...
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~ 155 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL 155 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence 34556689999995554 4444444444 344433 3444 66777664221 1 11 222211 110
Q ss_pred --------CCCC--CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCC-------CceEEEEEEEeCCCEEEecCC
Q 021750 117 --------TEDC--PSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTP-------GKTQCINHFRINDSWYLVDLP 179 (308)
Q Consensus 117 --------~~~~--~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~liDtp 179 (308)
.... ...+. .++|+|++|||||||+|.|.+.... .+.... ++|.....+... ...++|||
T Consensus 156 ~sa~~~~g~~~L~~~~~G~-~~~lvG~sG~GKSTLln~L~g~~~~-~~G~I~~~~~~G~~tt~~~~~~~~~-~g~v~dtp 232 (307)
T 1t9h_A 156 TSSKDQDSLADIIPHFQDK-TTVFAGQSGVGKSSLLNAISPELGL-RTNEISEHLGRGKHTTRHVELIHTS-GGLVADTP 232 (307)
T ss_dssp CCHHHHTTCTTTGGGGTTS-EEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEET-TEEEESSC
T ss_pred EecCCCCCHHHHHhhcCCC-EEEEECCCCCCHHHHHHHhcccccc-cccceeeecCCCcccccHHHHhhcC-CEEEecCC
Confidence 0000 01232 7999999999999999999985421 111111 233222223333 45789999
Q ss_pred Cccc
Q 021750 180 GYGY 183 (308)
Q Consensus 180 G~~~ 183 (308)
|+..
T Consensus 233 g~~~ 236 (307)
T 1t9h_A 233 GFSS 236 (307)
T ss_dssp SCSS
T ss_pred Cccc
Confidence 9864
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0005 Score=64.58 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHh
Q 021750 125 LPEFALVGRSNVGKSSLLNSLV 146 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~ 146 (308)
...|+++|.+||||||++..|.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4478899999999999999987
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00019 Score=64.23 Aligned_cols=54 Identities=28% Similarity=0.409 Sum_probs=34.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCC-------CceEEEEEEEeCCCEEEecCCCcc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTP-------GKTQCINHFRINDSWYLVDLPGYG 182 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~liDtpG~~ 182 (308)
.++++|++|||||||+|.|. ... +...... .+|.....+.....-.++|+||+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~-~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEE-LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS 227 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCC-CCCSCC---------CCCCEEEEEETTTEEEESSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHH-Hhh-CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcC
Confidence 68999999999999999999 542 2111111 123222333333456789999975
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0007 Score=61.87 Aligned_cols=82 Identities=16% Similarity=0.237 Sum_probs=52.3
Q ss_pred CCccEEEEEEeCCCCCChhHHHHHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 206 STLVSVFLLIDASIPAKPIDLEYASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~~l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
..+|.+++| |+..+..... .+.+++ ...++|.+||+||+|+.+.. ..+.++.+...+. ..+.+++.
T Consensus 129 anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~------~~~~~~~~~~~y~---~~G~~v~~ 197 (358)
T 2rcn_A 129 ANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDE------GMDFVNEQMDIYR---NIGYRVLM 197 (358)
T ss_dssp ECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHH------HHHHHHHHHHHHH---TTTCCEEE
T ss_pred hcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCch------hHHHHHHHHHHHH---hCCCcEEE
Confidence 345656655 5555544333 344444 34678999999999998532 1112444444443 23578999
Q ss_pred eecCCCCCHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHM 298 (308)
Q Consensus 283 vSA~~g~gi~el~~~i 298 (308)
+||.++.|++++...+
T Consensus 198 ~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 198 VSSHTQDGLKPLEEAL 213 (358)
T ss_dssp CBTTTTBTHHHHHHHH
T ss_pred EecCCCcCHHHHHHhc
Confidence 9999999999987653
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00098 Score=63.33 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-|+|+|.+|||||||++.|.+
T Consensus 295 VI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHH
Confidence 699999999999999999986
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00085 Score=60.06 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-|+++|.+|+||||++..|.+
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHH
Confidence 689999999999999999876
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00018 Score=64.26 Aligned_cols=56 Identities=34% Similarity=0.452 Sum_probs=34.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCC-------CceEEEEEEEeCCCEEEecCCCccc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTP-------GKTQCINHFRINDSWYLVDLPGYGY 183 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~liDtpG~~~ 183 (308)
.++++|++|||||||+|.|.+..... ..... .+|.....+.......++|+||+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~~-~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~ 233 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKLR-VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN 233 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC--------------CCCSCCEEECTTSCEEESSCSSTT
T ss_pred eEEEECCCCCcHHHHHHHhccccccc-ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCc
Confidence 68999999999999999999864321 11111 1222112233333457889999753
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00017 Score=60.36 Aligned_cols=22 Identities=36% Similarity=0.684 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|++|||||||++.|.+.
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 6899999999999999999974
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.011 Score=52.98 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
.-|+++|.+|+||||++..|.+
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998875
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00024 Score=58.99 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|+|+|++|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999864
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.01 Score=55.46 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+++|.+|+||||++..|.+
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999998875
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00079 Score=55.29 Aligned_cols=22 Identities=32% Similarity=0.700 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+++|+|++|+|||||++.+++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999885
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00087 Score=54.86 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999874
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00096 Score=55.59 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|||||||++.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6999999999999999999873
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0014 Score=54.84 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|++|||||||++.|.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999884
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0014 Score=54.30 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0016 Score=53.28 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|++|+|||||++.|.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999875
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0017 Score=55.01 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|||||||++.|.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999999884
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.002 Score=54.77 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|++|||||||++.|.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999985
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0019 Score=54.06 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+|+|++|+|||||++.|.+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999874
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0023 Score=51.89 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-++++|++|+|||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 589999999999999998664
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0024 Score=54.84 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6999999999999999999985
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.002 Score=61.04 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
...|+++|.+|+||||+.++|...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0098 Score=49.01 Aligned_cols=62 Identities=11% Similarity=-0.015 Sum_probs=38.9
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-----CCCCEEEEeecC
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-----NQIPMTLVFTKC 246 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-----~~~pvivV~NK~ 246 (308)
.++++|+|+... ......+.. +|.++++++.+... ..-..+...+.. .+.++.+|+|++
T Consensus 77 D~viiD~~~~~~------------~~~~~~l~~---ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 77 DFAIVDGAGSLS------------VITSAAVMV---SDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp SEEEEECCSSSS------------HHHHHHHHH---CSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CEEEEECCCCCC------------HHHHHHHHH---CCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 689999998431 122233333 34588888887655 444445555543 246779999999
Q ss_pred CCC
Q 021750 247 DKR 249 (308)
Q Consensus 247 Dl~ 249 (308)
|..
T Consensus 141 ~~~ 143 (206)
T 4dzz_A 141 IEM 143 (206)
T ss_dssp CTT
T ss_pred CCC
Confidence 954
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0027 Score=53.18 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|++|||||||++.|.+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999875
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0027 Score=54.08 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999985
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0029 Score=50.83 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|.+.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999985
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.024 Score=53.18 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHh
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLV 146 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~ 146 (308)
....-|+|+|..++|||+|+|.|+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 345578899999999999999665
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.003 Score=50.73 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|.+|+||||+.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999874
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0032 Score=52.09 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|.+||||||+++.|.+.
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999875
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0034 Score=54.04 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0034 Score=51.39 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-++|+|++|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0033 Score=52.40 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|.+|+|||||++.|.+.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999874
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0035 Score=53.84 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
.++|+|++|+|||||++.|.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999999853
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0035 Score=54.70 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|++|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.004 Score=49.77 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|.+||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0036 Score=55.09 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999985
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0037 Score=52.84 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|++-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0036 Score=54.75 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999984
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0037 Score=52.02 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|.+|||||||++.|...
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999864
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0037 Score=54.30 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0045 Score=50.55 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+-++++|.+|+|||||+++|++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 457999999999999999999874
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0038 Score=53.93 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999985
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0038 Score=51.77 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|.+|+|||||++.|.+.
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6999999999999999999763
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0039 Score=53.68 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999985
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.004 Score=51.54 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999874
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0064 Score=50.27 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=23.4
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 120 CPSDGLPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 120 ~~~~~~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
........|+|.|.+|+||||+.+.|...
T Consensus 10 ~~~~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 10 FSPDQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp SCTTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 33445557999999999999999999753
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0041 Score=53.05 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0041 Score=54.30 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 6899999999999999999985
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0043 Score=53.37 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0048 Score=51.07 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+|+||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0045 Score=53.54 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0044 Score=55.31 Aligned_cols=21 Identities=48% Similarity=0.686 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.++|+|++|+|||||++.|.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 799999999999999999986
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0045 Score=53.80 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|++-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999985
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0046 Score=53.88 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6999999999999999999985
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0048 Score=53.95 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|++-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0046 Score=53.53 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0047 Score=54.16 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|++-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999985
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0054 Score=52.57 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHh
Q 021750 126 PEFALVGRSNVGKSSLLNSLV 146 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~ 146 (308)
..|+|+|.+|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999999
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0038 Score=52.50 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999985
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0051 Score=49.02 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=18.2
Q ss_pred eEEEEcCCCCCHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSL 145 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l 145 (308)
-|+|+|.+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0049 Score=53.73 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 6999999999999999999873
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0027 Score=51.78 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+|+|.+|+|||||++.|.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0052 Score=49.54 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|+|.+|+||||+.+.|.+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999876
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.005 Score=54.21 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|++-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0035 Score=53.19 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=15.2
Q ss_pred eEEEEcCCCCCHHHHHHHHh-cC
Q 021750 127 EFALVGRSNVGKSSLLNSLV-RR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~-~~ 148 (308)
-++|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999999 64
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0053 Score=53.63 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0053 Score=53.27 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.007 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+|+|.+|+||||+.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0056 Score=50.72 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|.+|+||||+.+.|.+.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999874
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0059 Score=51.31 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+|+|.+|+||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0056 Score=51.38 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|++|+|||||++.+++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0064 Score=48.94 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-|+++|.||+||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999986
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0057 Score=54.76 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.-|+|+|++|+|||||++.|.+-
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhh
Confidence 37999999999999999999873
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0056 Score=49.67 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.+.+.
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0082 Score=49.66 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999985
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.007 Score=48.77 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+++|.+|+||||+.+.|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999873
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0071 Score=49.19 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|.|.+||||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0046 Score=55.23 Aligned_cols=22 Identities=50% Similarity=0.670 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 7999999999999999999884
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0074 Score=52.67 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.+.+-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0079 Score=49.88 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999976
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0073 Score=55.10 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-++|+|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 58999999999999999999853
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0082 Score=49.33 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999863
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=95.38 E-value=0.008 Score=54.96 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-++|+|++|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 58999999999999999999853
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.008 Score=51.54 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|+|+.|+|||||++.|.+
T Consensus 27 iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999987
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0078 Score=53.29 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
.++|+|+.|+|||||++.|.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999999853
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0067 Score=55.39 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-+++|+|.+|+|||||++.|.+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999999985
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0087 Score=54.56 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-++|+|++|||||||++.|.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.011 Score=48.12 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
++.++++|.+|+|||||+++|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999863
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.011 Score=48.98 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+|+|.+|+||||+.+.|.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 37999999999999999999885
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.012 Score=47.81 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+++|.+|+||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.01 Score=49.49 Aligned_cols=21 Identities=19% Similarity=0.465 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
+|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999965
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.007 Score=47.98 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999884
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0093 Score=54.46 Aligned_cols=22 Identities=36% Similarity=0.372 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 5899999999999999999985
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0093 Score=54.86 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-++|+|++|||||||++.|.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 58999999999999999999853
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0096 Score=54.43 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-++|+|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 58999999999999999999853
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.011 Score=49.35 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
+|+|+|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999965
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.014 Score=47.57 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+|+|.+|+||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999764
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.011 Score=48.10 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|.|.+||||||+.+.|..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999976
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.01 Score=48.30 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|+|.+|+||||+.+.|..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.01 Score=54.51 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-++|+|++|+|||||++.|.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 58999999999999999999853
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.042 Score=51.06 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+++|.||+||||+.++|...
T Consensus 260 lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6889999999999999999764
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.01 Score=54.40 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-++|+|++|+|||||++.|.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 58999999999999999999853
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.011 Score=47.66 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+|+|.+|+||||+.+.|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999763
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.016 Score=46.78 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+|+||||+.+.|..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.012 Score=47.72 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|+|.+||||||+.+.|..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999975
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=95.11 E-value=0.017 Score=47.71 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+|+||||+.+.|..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.014 Score=49.10 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.011 Score=54.10 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|++.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999985
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.011 Score=54.05 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|++|+|||||++.+++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999873
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.01 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+|+|.+|+|||||++.|.+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999873
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=95.06 E-value=0.011 Score=53.42 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999984
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.011 Score=48.98 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
.-|+|+|.+|+|||||++.|.+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.011 Score=52.59 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
-.|+++|++|||||||++.|.+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3799999999999999999985
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.012 Score=51.55 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
++|+|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999874
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.012 Score=54.23 Aligned_cols=22 Identities=41% Similarity=0.739 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6999999999999999999984
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.017 Score=48.38 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+|+||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.017 Score=51.93 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=21.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhc
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
...+-|+|+|.+|||||||++.|.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999999876
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=94.87 E-value=0.0089 Score=54.34 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-++|+|++|+|||||++.|.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 58999999999999999999853
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.013 Score=50.21 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
++|+|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999874
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.014 Score=48.21 Aligned_cols=21 Identities=33% Similarity=0.265 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|.|.+|+||||+.+.|..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999976
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.83 E-value=0.016 Score=47.55 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
...|+|+|.+|+||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457999999999999999999875
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.013 Score=53.70 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|++|+|||||++.|++.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6999999999999999999873
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.016 Score=49.91 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHh
Q 021750 126 PEFALVGRSNVGKSSLLNSLV 146 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~ 146 (308)
..|+|+|++|+||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999998
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.016 Score=46.08 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.014 Score=51.95 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-++++|++||||||+++.|.+
T Consensus 102 vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999987
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.016 Score=47.72 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|.|.+||||||+.+.|...
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999875
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.018 Score=50.92 Aligned_cols=24 Identities=17% Similarity=0.034 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
...|+|+|.+|+|||||++.|.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998763
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.02 Score=46.71 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+|+||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.016 Score=47.07 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|+|.+|+||||+.+.|..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.017 Score=46.88 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
+.|+|+|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999875
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.018 Score=48.58 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.0065 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|.|.+|+||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.017 Score=48.27 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
+|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999976
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.016 Score=47.19 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+++|.+|+||||+.+.|...
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999763
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.016 Score=48.48 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-++|+|++|+|||||++.+++
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999985
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.013 Score=49.79 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|.|..|+|||||++.|.+.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999764
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.016 Score=47.05 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.02 Score=45.70 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|.|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999875
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.064 Score=44.68 Aligned_cols=64 Identities=6% Similarity=-0.130 Sum_probs=37.1
Q ss_pred CEEEecCCCc-ccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhcc-CCCCEEEEeecCCCC
Q 021750 172 SWYLVDLPGY-GYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ-NQIPMTLVFTKCDKR 249 (308)
Q Consensus 172 ~~~liDtpG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~-~~~pvivV~NK~Dl~ 249 (308)
.++++|||+. .. . .....+.. +|.+++++..+...-..-..+.+++.. .+.++.+|+|++|..
T Consensus 69 D~viiD~p~~~~~-~-----------~~~~~l~~---aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 69 QNIVIDTQARPED-E-----------DLEALADG---CDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPY 133 (209)
T ss_dssp SEEEEEEECCCSS-S-----------HHHHHHHT---SSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCT
T ss_pred CEEEEeCCCCcCc-H-----------HHHHHHHH---CCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCc
Confidence 7999999985 21 1 22233333 345888887763211111233444444 367789999999865
Q ss_pred C
Q 021750 250 K 250 (308)
Q Consensus 250 ~ 250 (308)
.
T Consensus 134 ~ 134 (209)
T 3cwq_A 134 P 134 (209)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.0087 Score=54.53 Aligned_cols=23 Identities=22% Similarity=0.540 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-++|+|++|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.018 Score=47.70 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|.|.+|+||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999976
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.018 Score=46.59 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|+|.+|+||||+.+.|.+
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.018 Score=47.15 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+|+|.+|+||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999763
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.022 Score=48.82 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
...|+|.|.|||||||+.+.|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.019 Score=46.41 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-.+|+|+.|+|||||+.+|..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.013 Score=52.37 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
++-++|+|..|+|||||++.|.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 456899999999999999999974
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.52 E-value=0.019 Score=46.04 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..+.|.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.026 Score=47.80 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
...|+|+|.+|+||||+.+.|...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999753
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.018 Score=50.67 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|++|+|||||+..+++.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.018 Score=53.70 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|++|+|||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999873
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.02 Score=47.43 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|.|.+|+||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999976
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=94.47 E-value=0.019 Score=55.00 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|++-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999999873
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=94.46 E-value=0.019 Score=49.56 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|.+|+|||||.+.|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 4789999999999999999763
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.021 Score=46.28 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|.|.+|+||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999975
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.44 E-value=0.019 Score=50.03 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|+|+|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999874
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.02 Score=52.02 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+++|+|++|+|||||++.|.+.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999985
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.019 Score=50.67 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
.-|+|+|.|||||||+.+.|..
T Consensus 34 ~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.019 Score=54.20 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|++-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 7999999999999999999984
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.02 Score=51.46 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999874
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.025 Score=48.99 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+++|.|||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.022 Score=49.24 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|+|.+|+||||+.+.|.+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999976
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.026 Score=47.25 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|+|||||+|....|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=94.24 E-value=0.026 Score=54.86 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 7999999999999999999985
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.027 Score=47.51 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.018 Score=46.47 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=15.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999975
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.025 Score=47.00 Aligned_cols=21 Identities=19% Similarity=0.066 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-++|+|++|+|||||+..++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.023 Score=51.82 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-|+++|.+||||||+++.|.+
T Consensus 159 vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHh
Confidence 689999999999999999987
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.029 Score=48.17 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
....|+|.|.+|+||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999976
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.026 Score=47.69 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|++|+|||||+..+++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999873
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.031 Score=44.54 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
+-.|+|.|.+||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.028 Score=54.15 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=22.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|. .++|+|+.|+|||||++.|.+.
T Consensus 45 ~~Ge-~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 45 KEGM-VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp CTTS-EEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCC-EEEEECCCCCCHHHHHHHHhCC
Confidence 3444 7999999999999999999985
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.03 Score=46.90 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+|+||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=94.03 E-value=0.027 Score=47.02 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.031 Score=53.77 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|+.|+|||||++.|.+.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999985
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.029 Score=46.76 Aligned_cols=22 Identities=36% Similarity=0.382 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+++|.+|+||||+.+.|.+.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998763
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.027 Score=53.43 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-++|+|++|+|||||++.|.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999987
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.027 Score=52.74 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+++|+|++|+|||||++.|.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7999999999999999999985
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.03 Score=54.39 Aligned_cols=22 Identities=50% Similarity=0.652 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999985
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.029 Score=54.67 Aligned_cols=22 Identities=41% Similarity=0.665 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++++|++|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 8999999999999999999985
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.025 Score=48.69 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+++|.||+||||+.+.|...
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999763
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.81 E-value=0.031 Score=47.96 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|.|++|+|||+|++++.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999999999874
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=93.76 E-value=0.032 Score=47.38 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|.|.+|+||||+++.|...
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999864
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.04 Score=48.28 Aligned_cols=24 Identities=42% Similarity=0.498 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
....|+|.|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999973
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.034 Score=54.34 Aligned_cols=28 Identities=36% Similarity=0.633 Sum_probs=23.7
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCC
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
..+|. .++|+|+.|+|||||++.|.+-.
T Consensus 100 ~~~Ge-i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQ-VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTS-EEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCC-EEEEECCCCChHHHHHHHHhcCC
Confidence 34555 69999999999999999999853
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=93.63 E-value=0.036 Score=46.42 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..+.|.|++|+|||+|+..+...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=93.62 E-value=0.027 Score=54.72 Aligned_cols=22 Identities=45% Similarity=0.554 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++++|++|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 7999999999999999999884
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.026 Score=45.15 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..+.|.|++|+|||+|+..+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=93.57 E-value=0.035 Score=50.97 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.++|+|++|+|||||++.|.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999986
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.039 Score=45.38 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..+.|.|++|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.041 Score=46.44 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|.|+|+|||||+|....|...
T Consensus 32 I~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999864
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.042 Score=45.38 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+|+|.+|+||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999763
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.47 E-value=0.028 Score=59.90 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+|+|||++|+|||||++.|.+-
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 8999999999999999999873
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=93.42 E-value=0.046 Score=43.11 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-.+|+|+.|+|||||+.++.-
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999863
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.039 Score=53.92 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=22.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|. .++|+|+.|+|||||++.|.+.
T Consensus 115 ~~Ge-~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 115 KDGM-VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp CTTS-EEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCC-EEEEECCCCChHHHHHHHHhCC
Confidence 4444 7999999999999999999985
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.04 Score=53.04 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|++-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=93.25 E-value=0.045 Score=48.03 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+++|.||+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.032 Score=54.25 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999884
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.056 Score=46.15 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|.|++|+||||+.+.|..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999974
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.047 Score=49.81 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 021750 127 EFALVGRSNVGKSSLLNSLV 146 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~ 146 (308)
-.+|+|+.|+|||||+++++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 36799999999999999987
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.049 Score=44.75 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999976
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=93.12 E-value=0.045 Score=47.66 Aligned_cols=21 Identities=38% Similarity=0.275 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-++|+|++|+|||||+..+++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999986
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=0.051 Score=45.15 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|.|++|+|||+|+..+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.00 E-value=0.052 Score=52.20 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
.++|+|+.|+|||||++.|.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=92.97 E-value=0.068 Score=45.29 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+|+||||+.+.|.+
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999886
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.94 E-value=0.054 Score=44.42 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+.|.|++|+|||+|+..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999763
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=0.052 Score=48.07 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+++|.+|+||||++..|.+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999874
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=92.81 E-value=0.054 Score=52.88 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
.++|+|+.|+|||||++.|.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999853
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.056 Score=47.29 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|.|.|+||+|||+|++++.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 37999999999999999999874
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=92.69 E-value=0.13 Score=43.45 Aligned_cols=41 Identities=15% Similarity=-0.026 Sum_probs=27.1
Q ss_pred EEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 211 VFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 211 vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
-++++|-.........+....+...++++++++-..|-...
T Consensus 91 dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~~ 131 (223)
T 2b8t_A 91 KVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKGE 131 (223)
T ss_dssp CEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTSS
T ss_pred CEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccCC
Confidence 36778877655443334444444468999999999986543
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=92.69 E-value=0.064 Score=44.68 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|++|+|||+|...|...
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999875
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.058 Score=46.84 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..+.|.|+||+|||+|++++.+.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 36999999999999999999864
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.069 Score=41.63 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|.|.|++|+|||++..++...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 5999999999999999999764
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.57 E-value=0.061 Score=52.51 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 021750 128 FALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~~ 149 (308)
++|+|+.|+|||||++.|.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999999853
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=92.56 E-value=0.072 Score=48.59 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=20.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHh
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLV 146 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~ 146 (308)
....||+|+|.+|+|||||+.++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 446799999999999999999873
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.54 E-value=0.066 Score=45.14 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-++|+|++|+|||||+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999877764
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.48 E-value=0.085 Score=44.98 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|.|.|+||+|||+|++++.+.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999863
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=92.45 E-value=0.086 Score=46.24 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
...+.|.|+||+|||+|++++...
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999887763
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=92.39 E-value=0.062 Score=45.00 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.+++.|+||+|||+++.++.+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999888876
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.37 E-value=0.069 Score=47.86 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.++|.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999887
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.079 Score=45.11 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+++|+|.|||||||+...|...
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999763
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=92.36 E-value=0.067 Score=47.23 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|.|.|+||+|||+|++++.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 5899999999999999999874
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.24 E-value=0.067 Score=48.13 Aligned_cols=22 Identities=14% Similarity=0.421 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|.|++|+|||||++.+.+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=92.23 E-value=0.09 Score=46.28 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-+.|.|+||+|||+|..++...
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4667799999999999999864
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.23 E-value=0.076 Score=47.99 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+.++|.|++|+|||||++.+.+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999874
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=92.17 E-value=0.012 Score=50.08 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
++|+|++|+|||||++.+++.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 589999999999999999874
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.15 E-value=0.09 Score=47.09 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+.+++.|++|+||||+++.+.+.
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999874
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=92.14 E-value=0.073 Score=47.30 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.-+.|.|++|+|||+|++.+.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999873
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=92.07 E-value=0.1 Score=47.32 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+.|+|+|.+|+||||+...|.+.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999988763
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=91.96 E-value=0.077 Score=48.07 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-+.|+|++|+|||||+..+++.
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=91.78 E-value=0.052 Score=52.38 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|.+|+|||||++.|.+.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 6999999999999999999874
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=91.72 E-value=0.093 Score=55.91 Aligned_cols=22 Identities=45% Similarity=0.688 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS
T ss_pred EEEEEecCCCcHHHHHHHhccc
Confidence 8999999999999999999985
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=91.59 E-value=0.11 Score=45.49 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|.|++|+|||++++.+.+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 6999999999999999999873
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=91.59 E-value=0.1 Score=47.17 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|++|||||||...|...
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=91.57 E-value=0.11 Score=43.22 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=18.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-.+|+|+.|+|||||+.+|.-
T Consensus 25 ~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999863
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=91.57 E-value=0.094 Score=45.81 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..+.|.|+||+|||++++++...
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999763
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=91.56 E-value=0.11 Score=42.38 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|.|++|+||||+.-.|...
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 4899999999999999999875
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=91.53 E-value=0.095 Score=46.98 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|++|+|||||...|...
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=91.45 E-value=0.1 Score=45.11 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..+.|.|++|+|||+|+.++...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 47999999999999999999874
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=91.39 E-value=0.069 Score=46.03 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
...|+|.|.+|+||||+++.|...
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 347999999999999999998764
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=91.36 E-value=0.066 Score=41.64 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|.|.|++|+|||++..++...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 5999999999999999988764
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=91.31 E-value=0.067 Score=47.18 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=17.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
+-|+|.|.+|+||||+.+.|..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999876
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=91.22 E-value=0.11 Score=44.14 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|++.|.+|+||||+++.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=91.18 E-value=0.15 Score=46.03 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|++|+|||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=91.05 E-value=0.066 Score=54.99 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|+|.
T Consensus 701 ivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=91.05 E-value=0.095 Score=55.66 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+-
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999884
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=90.88 E-value=0.12 Score=46.00 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-|+++|.+|+||||+...|....
T Consensus 146 ~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 146 GVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp EEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHhcC
Confidence 69999999999999999999853
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=90.88 E-value=0.12 Score=46.09 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+.|.|++|+|||++++.+.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999874
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=90.87 E-value=0.059 Score=46.35 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+.|.|+||+|||+|++++.+.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999999874
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=90.87 E-value=0.12 Score=53.16 Aligned_cols=22 Identities=23% Similarity=0.602 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.|.++
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999964
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=90.86 E-value=0.11 Score=49.91 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|+||+|||||++.+.+.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6999999999999999999864
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=90.85 E-value=0.077 Score=52.39 Aligned_cols=20 Identities=40% Similarity=0.559 Sum_probs=17.9
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 021750 127 EFALVGRSNVGKSSLLNSLV 146 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~ 146 (308)
.++|+|++|+|||||++.++
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 68999999999999998654
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.84 E-value=0.12 Score=46.15 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.-|.|.|+||+|||+|++++.+.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999999999874
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.83 E-value=0.12 Score=48.19 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|.+.|+||+|||+|+.++.+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999874
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=90.82 E-value=0.13 Score=43.11 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-|+|.|.+|+||||+++.|..
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999865
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=90.82 E-value=0.13 Score=45.92 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|++|||||+|...|...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999999864
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=90.78 E-value=0.13 Score=42.67 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..|+|+|.+|+||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998876
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=90.73 E-value=0.13 Score=47.58 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 021750 127 EFALVGRSNVGKSSLLNSLV 146 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~ 146 (308)
-++|+|++|+|||||+..|+
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 68999999999999999775
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=90.72 E-value=0.12 Score=49.51 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHH--Hhc
Q 021750 128 FALVGRSNVGKSSLLNS--LVR 147 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~--l~~ 147 (308)
++|+|++|+|||||++. +.+
T Consensus 42 ~~l~G~nGsGKSTL~~~~ll~G 63 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFLYNG 63 (525)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=90.71 E-value=0.11 Score=46.79 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..+.|.|++|+|||+|++.+...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999864
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=90.64 E-value=0.13 Score=45.83 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|.|.|+||+|||+|+.++...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 47999999999999999999764
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.63 E-value=0.12 Score=49.10 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|+|+||+|||+|++++.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 308 | ||||
| d1svia_ | 195 | c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti | 2e-31 | |
| d1puia_ | 188 | c.37.1.8 (A:) Probable GTPase EngB {Escherichia co | 5e-25 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 3e-19 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 1e-16 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 4e-15 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 5e-13 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 1e-12 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 1e-12 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 2e-12 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 1e-11 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 1e-11 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 4e-11 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 5e-11 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 1e-09 | |
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 6e-09 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 2e-08 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 2e-08 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 2e-08 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 7e-08 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 8e-08 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 1e-07 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 2e-07 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 2e-07 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 2e-07 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 3e-07 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 4e-07 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 4e-07 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 6e-07 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 6e-07 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 8e-07 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 8e-07 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 8e-07 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 8e-07 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-06 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 1e-06 | |
| d2g3ya1 | 172 | c.37.1.8 (A:73-244) GTP-binding protein GEM {Human | 1e-06 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 2e-06 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 2e-06 | |
| d1g7sa4 | 227 | c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N- | 3e-06 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 3e-06 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 5e-06 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 6e-06 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 6e-06 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 6e-06 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 9e-06 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 9e-06 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 1e-05 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 1e-05 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 1e-05 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 2e-05 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 2e-05 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 3e-05 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 3e-05 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 5e-05 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 5e-05 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 6e-05 | |
| d1puja_ | 273 | c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti | 6e-05 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 7e-05 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 9e-05 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 1e-04 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 1e-04 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 4e-04 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 8e-04 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 0.001 | |
| d2p67a1 | 327 | c.37.1.10 (A:1-327) LAO/AO transport system kinase | 0.003 | |
| d2qm8a1 | 323 | c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo | 0.003 |
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Score = 114 bits (284), Expect = 2e-31
Identities = 72/200 (36%), Positives = 108/200 (54%), Gaps = 7/200 (3%)
Query: 104 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC 163
+V ++E V S+V+ E P GLPE AL GRSNVGKSS +NSL+ RK LA TS PGKTQ
Sbjct: 2 KVTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQT 61
Query: 164 INHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKP 223
+N + IND + VD+PGYG+A + R W + + Y R L +V ++D
Sbjct: 62 LNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSN 121
Query: 224 IDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283
D++ +L IP+ ++ TK DK K K +++ ++ + I+
Sbjct: 122 DDVQMYEFLKYYGIPVIVIATKADKIPKGK-----WDKHAKVVRQTLN--IDPEDELILF 174
Query: 284 SSVTNQGRDEILLHMAQLRN 303
SS T +G+DE + ++ N
Sbjct: 175 SSETKKGKDEAWGAIKKMIN 194
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Score = 97.2 bits (240), Expect = 5e-25
Identities = 70/191 (36%), Positives = 96/191 (50%), Gaps = 6/191 (3%)
Query: 110 FVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRI 169
FV S+ PSD E A GRSN GKSS LN+L +K LA TSKTPG+TQ IN F +
Sbjct: 1 FVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV 60
Query: 170 NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYA 229
D LVDLPGYGYA P E++ W + +Y R +L + +L+D P K +D +
Sbjct: 61 ADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMI 120
Query: 230 SWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQ 289
W + I + ++ TK DK + LN +E + F SS+ Q
Sbjct: 121 EWAVDSNIAVLVLLTKADKLASGAR-----KAQLNMVREAVLAFNGDVQV-ETFSSLKKQ 174
Query: 290 GRDEILLHMAQ 300
G D++ +
Sbjct: 175 GVDKLRQKLDT 185
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 81.7 bits (200), Expect = 3e-19
Identities = 34/186 (18%), Positives = 61/186 (32%), Gaps = 22/186 (11%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAA-- 186
GRSNVGKS+L+ L +K K PG T+ I + +D+PG+G+
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWKNHKI-IDMPGFGFMMGLP 60
Query: 187 -----------PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQN 235
+ + + + PID+E+ +L +
Sbjct: 61 KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL 120
Query: 236 QIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEIL 295
IP + K DK K + E + +I S+ + +
Sbjct: 121 DIPTIVAVNKLDKIKNVQEVINFLAEKFEV------PLSEIDKVFIPISAKFGDNIERLK 174
Query: 296 LHMAQL 301
+ ++
Sbjct: 175 NRIFEV 180
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 77.1 bits (189), Expect = 1e-16
Identities = 34/178 (19%), Positives = 55/178 (30%), Gaps = 22/178 (12%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKL---ALTSKTPGKTQCINHFRI--NDSWYLVDLPGYGY 183
A+ G + GKSS +N+L A + T + ++ + DLPG G
Sbjct: 60 AVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGS 119
Query: 184 AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVF 243
P Y F +I ++ K D++ A + + V
Sbjct: 120 TNFP----------PDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVR 169
Query: 244 TKCDK----RKKKKNGGKRPEENLNDFQELIQGFFQTA---PPWIMTSSVTNQGRDEI 294
TK D + E+ L D + F+ P I S N +
Sbjct: 170 TKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDF 227
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 70.0 bits (170), Expect = 4e-15
Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 7/177 (3%)
Query: 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYA 184
L + LVG +VGKS+LL+ + K + +D V G
Sbjct: 1 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 60
Query: 185 AAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFT 244
+ +F + T V V ++ + + + +Y + + +
Sbjct: 61 EGAHQGVGLGHQFLRHI---ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTE 117
Query: 245 KCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301
+ K ENL F+E + + P S+VT +G E+L +A
Sbjct: 118 RPQIIVANKMDMPEAAENLEAFKEKLTDDY----PVFPISAVTREGLRELLFEVANQ 170
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 64.3 bits (155), Expect = 5e-13
Identities = 27/181 (14%), Positives = 56/181 (30%), Gaps = 19/181 (10%)
Query: 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN----HFRINDSWYLVDLPG 180
+ + LVG N GKSSLL ++ R + P T N + + L D+PG
Sbjct: 1 IADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPG 58
Query: 181 YGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMT 240
A ++ ++ + + + ++DA+ +G +
Sbjct: 59 IIEGA------SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALL 112
Query: 241 LVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
+ K + + + + S++T G + +
Sbjct: 113 RRPSLVALNKVDLLEEEAVKALADALARE-------GLAVLPVSALTGAGLPALKEALHA 165
Query: 301 L 301
L
Sbjct: 166 L 166
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 62.8 bits (151), Expect = 1e-12
Identities = 32/173 (18%), Positives = 61/173 (35%), Gaps = 12/173 (6%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPR 188
A+VGR NVGKS+LLN L+ +K + K I ++ + + G +
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK 68
Query: 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDK 248
R K + + V +++ + P D + L + + P+ L K D
Sbjct: 69 --RAINRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLREGKAPVILAVNKVDN 125
Query: 249 RKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301
++K + + + + S+ T D I + +
Sbjct: 126 VQEKADLLPHLQFLASQMNF---------LDIVPISAETGLNVDTIAAIVRKH 169
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 62.3 bits (150), Expect = 1e-12
Identities = 30/167 (17%), Positives = 56/167 (33%), Gaps = 17/167 (10%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPR 188
+VG+ NVGKS+LLN L+ + +T I+ + + G +
Sbjct: 4 VIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETN 63
Query: 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDK 248
+L + V ++DAS P D + +V K D
Sbjct: 64 DLVERL--GIERTLQEIEKADIVLFVLDASSPLDEEDRKILER--IKNKRYLVVINKVDV 119
Query: 249 RKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEIL 295
+K +E I+ T + S++ +G +++
Sbjct: 120 VEK-------------INEEEIKNKLGTDRHMVKISALKGEGLEKLE 153
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 62.8 bits (151), Expect = 2e-12
Identities = 32/175 (18%), Positives = 67/175 (38%), Gaps = 7/175 (4%)
Query: 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGY 181
+D + + A+VGR NVGKS+L N+++ +++ ++ ++ D V +
Sbjct: 6 TDAI-KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTA 64
Query: 182 GYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLL-IDASIPAKPIDLEYASWLGQNQIPMT 240
G R +K++ ++ V ++ +DA+ D A + +
Sbjct: 65 GLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASV 124
Query: 241 LVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEIL 295
+VF K D ++ + + I P I TS+ D ++
Sbjct: 125 VVFNKWDLVVHREKRYDEFTKLFREKLYFIDY-----SPLIFTSADKGWNIDRMI 174
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.3 bits (145), Expect = 1e-11
Identities = 27/173 (15%), Positives = 54/173 (31%), Gaps = 16/173 (9%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAP 187
L+G S VGKS+LL+ R + + T G +++ +
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 66
Query: 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCD 247
R + + + Y L+ + + L+ + I + LV K D
Sbjct: 67 RRITSAY------YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120
Query: 248 KRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
R + E + +I TS++ + +E ++
Sbjct: 121 LRHLRA----------VPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT 163
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 60.1 bits (144), Expect = 1e-11
Identities = 33/173 (19%), Positives = 63/173 (36%), Gaps = 13/173 (7%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPR 188
A+VG+ NVGKS+LLN+L+ K A S P T+ + + + +
Sbjct: 9 AIVGKPNVGKSTLLNNLLGVKV-APISPRPQTTRKRLRGILTEGRR--QIVFVDTPGLHK 65
Query: 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDK 248
+ + ++ + + + +V ++D P P D A L + ++
Sbjct: 66 PMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKL 125
Query: 249 RKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301
K PEE + + E M S++ + E+ + L
Sbjct: 126 DAAKY-----PEEAMKAYHE-----LLPEAEPRMLSALDERQVAELKADLLAL 168
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 58.6 bits (140), Expect = 4e-11
Identities = 34/168 (20%), Positives = 57/168 (33%), Gaps = 14/168 (8%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAP 187
+VGR NVGKS+L N LV++KK A+ G T+ + L
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 61
Query: 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCD 247
+ + R + V ++D D A +L ++ + LV K +
Sbjct: 62 PQDIISQKMKEVTLNMIREADL-VLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAE 120
Query: 248 KRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEIL 295
++ + K +L I S+ N D +L
Sbjct: 121 NLREFEREVKPELYSLGF------------GEPIPVSAEHNINLDTML 156
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.9 bits (141), Expect = 5e-11
Identities = 20/186 (10%), Positives = 45/186 (24%), Gaps = 11/186 (5%)
Query: 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAA 185
P + G N GK+SLL L P + V L +
Sbjct: 4 PSIIIAGPQNSGKTSLLTLLTTDS------VRPTVVSQEPLSAADYDGSGVTLVDFPGHV 57
Query: 186 APRELRTD---WDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLV 242
R +D + + + L +N I + +
Sbjct: 58 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIA 117
Query: 243 FTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302
K + + + ++ L + + + + + + L +
Sbjct: 118 CNKSELFTAR--PPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTD 175
Query: 303 NYWLKH 308
+ +
Sbjct: 176 GFKFAN 181
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 54.0 bits (128), Expect = 1e-09
Identities = 29/172 (16%), Positives = 52/172 (30%), Gaps = 17/172 (9%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPR 188
+ GR N GKSSLLN+L R+ A+ + G T+ + I+ + L A
Sbjct: 5 VIAGRPNAGKSSLLNALAGREA-AIVTDIAGTTRDVLREHIH--IDGMPLHIIDTAGLRE 61
Query: 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDK 248
+ + V ++D + E + +K
Sbjct: 62 ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121
Query: 249 RKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
+++ I S+ T +G D + H+ Q
Sbjct: 122 ADITGE-----TLGMSEVNGH---------ALIRLSARTGEGVDVLRNHLKQ 159
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 53.3 bits (127), Expect = 6e-09
Identities = 15/149 (10%), Positives = 48/149 (32%), Gaps = 7/149 (4%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPR 188
++G+ VGKSS +NS++ + S + + + + +++
Sbjct: 36 LVMGKGGVGKSSTVNSIIGERV-VSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 94
Query: 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-----MTLVF 243
+ K + L+++ V +++ + +D A + + +
Sbjct: 95 YINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVAL 154
Query: 244 TKCDKRK-KKKNGGKRPEENLNDFQELIQ 271
T + + ++++
Sbjct: 155 THAQFSPPDGLPYDEFFSKRSEALLQVVR 183
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (121), Expect = 2e-08
Identities = 26/183 (14%), Positives = 57/183 (31%), Gaps = 24/183 (13%)
Query: 123 DGLPEF--ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWY---LVD 177
D L ++G S VGKSSLL + T G + ++ + + D
Sbjct: 3 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWD 62
Query: 178 LPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQI 237
G + + T Y+ ++ V+ + K + +
Sbjct: 63 TAG----------QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRN 112
Query: 238 PMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLH 297
+ + K+ + E + N+ + + + + +I S+ T G
Sbjct: 113 DIVNMLVGNKIDKENR------EVDRNEGLKFAR---KHSMLFIEASAKTCDGVQCAFEE 163
Query: 298 MAQ 300
+ +
Sbjct: 164 LVE 166
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.5 bits (119), Expect = 2e-08
Identities = 26/171 (15%), Positives = 43/171 (25%), Gaps = 10/171 (5%)
Query: 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRE 189
+G N GK++LL+ L + T T + G R
Sbjct: 5 FLGLDNAGKTTLLHMLKNDR-----LATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARR 59
Query: 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249
L D+ + A+ + +P ++ K D
Sbjct: 60 LWKDYFPEVNGIVFLVD-----AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP 114
Query: 250 KKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
R L + + Q M S V G E ++Q
Sbjct: 115 NAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 2e-08
Identities = 28/178 (15%), Positives = 53/178 (29%), Gaps = 19/178 (10%)
Query: 125 LPEF--ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYG 182
+ E+ +VG VGKS+L L++ + T + ++ L L G
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLV 242
+ F + + + +PM LV
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSF---EDIHQYREQIKRVKDS---DDVPMVLV 114
Query: 243 FTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
KCD + + ++ P+I TS+ T QG ++ + +
Sbjct: 115 GNKCDLAART-----------VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (116), Expect = 7e-08
Identities = 31/177 (17%), Positives = 56/177 (31%), Gaps = 20/177 (11%)
Query: 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRE 189
++G VGKS+L V + T + L L G
Sbjct: 8 VLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT------ 61
Query: 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASI--PAKPIDLEYASWLGQNQIPMTLVFTKCD 247
+ Y N + V+ L++ KP+ + ++P+ LV K D
Sbjct: 62 --EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119
Query: 248 KRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304
+++ E +E F + TS+ + DE+ + + NY
Sbjct: 120 LESEREV---SSSEGRALAEEWGCPFME-------TSAKSKTMVDELFAEIVRQMNY 166
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.1 bits (116), Expect = 8e-08
Identities = 26/183 (14%), Positives = 54/183 (29%), Gaps = 24/183 (13%)
Query: 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWY---LVDLP 179
D + + ++G S+VGK+S L T G + ND + D
Sbjct: 3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 62
Query: 180 GYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVF-LLIDASIPAKPIDLEYASWLGQNQIP 238
G + + T Y+ + ++ + + S A +
Sbjct: 63 G----------QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ 112
Query: 239 MTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHM 298
+ LV KCD ++ +R + + + S+ N + +
Sbjct: 113 VLLVGNKCDMEDERVVSSERGRQLADHLGF----------EFFEASAKDNINVKQTFERL 162
Query: 299 AQL 301
+
Sbjct: 163 VDV 165
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.5 bits (114), Expect = 1e-07
Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 13/173 (7%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAP 187
L+G + VGKSS++ V T G IN+ ++
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF 65
Query: 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCD 247
L + Y ++ LV + S ++ I + LV K D
Sbjct: 66 ASLAPMY------YRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKID 119
Query: 248 KRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
++ EE +E FF+ TS+ T + +++ L + +
Sbjct: 120 MLQEGGERKVAREEGEKLAEEKGLLFFE-------TSAKTGENVNDVFLGIGE 165
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 48.2 bits (113), Expect = 2e-07
Identities = 26/173 (15%), Positives = 52/173 (30%), Gaps = 12/173 (6%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAP 187
++G S VGK+SL+N V +K T G ++D + +
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 64
Query: 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCD 247
+ L + + L V+ + L AS P ++ K D
Sbjct: 65 QSLGVAFYRGADCCVLVFD--VTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122
Query: 248 KRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
+ + + + P+ TS+ ++ +A+
Sbjct: 123 ----------LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 165
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.8 bits (112), Expect = 2e-07
Identities = 32/173 (18%), Positives = 51/173 (29%), Gaps = 17/173 (9%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAP 187
+VG VGKSS++ + KT G ++ND + L
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG---- 60
Query: 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCD 247
+ ++D TK Y+ V VF D IP LV K D
Sbjct: 61 ---QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKID 117
Query: 248 KRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
+ E + + TS + E+ ++A+
Sbjct: 118 LLDDSCIKNEEAEGLAKRLKL----------RFYRTSVKEDLNVSEVFKYLAE 160
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.8 bits (113), Expect = 2e-07
Identities = 24/177 (13%), Positives = 53/177 (29%), Gaps = 24/177 (13%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWY---LVDLPGYGYA 184
L+G S VGK+ +L + T G I ++ + D G
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG---- 64
Query: 185 AAPRELRTDWDKFTKDYFLNRSTLVSVFLLID-ASIPAKPIDLEYASWLGQNQIPMTLVF 243
+ + T Y+ ++ V+ + + S + + ++
Sbjct: 65 ------QERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 118
Query: 244 TKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
KCD K++ + + ++ TS+ N + +A+
Sbjct: 119 NKCDVNDKRQ----------VSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 165
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.6 bits (112), Expect = 3e-07
Identities = 24/173 (13%), Positives = 55/173 (31%), Gaps = 16/173 (9%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAP 187
+ ++G VGKS LL+ +K +A T G ++ + +
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 66
Query: 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCD 247
R + + + + + ++ L A L + L+ K D
Sbjct: 67 RAVTRSYYRGAAGALMV------YDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120
Query: 248 KRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
++ ++E Q + ++ S+ T + ++ L A+
Sbjct: 121 LEAQRD----------VTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 163
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 47.3 bits (111), Expect = 4e-07
Identities = 15/171 (8%), Positives = 42/171 (24%), Gaps = 17/171 (9%)
Query: 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRE 189
+VG N GK+++L + + + + I + + ++
Sbjct: 20 IVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTY 79
Query: 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249
+R + + + + + + K D +
Sbjct: 80 YTNTEFVIVVVDSTDRER----------ISVTREELYKMLAHEDLRKAGLLIFANKQDVK 129
Query: 250 KKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
+ L ++ ++T +G + L M
Sbjct: 130 ECMTVAEISQFLKLTSIKDHQWHIQ-------ACCALTGEGLCQGLEWMMS 173
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 46.9 bits (110), Expect = 4e-07
Identities = 19/172 (11%), Positives = 44/172 (25%), Gaps = 17/172 (9%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPR 188
L+G N GK++LL L +T + + + + +
Sbjct: 20 LLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRS 79
Query: 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDK 248
+R E + +P+ + K D
Sbjct: 80 YFENTDILIYVIDSADRKRFEET----------GQELTELLEEEKLSCVPVLIFANKQDL 129
Query: 249 RKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
NL+ ++ + S++T +G + + + +
Sbjct: 130 LTAAPASEIAEGLNLHTIRDRVWQIQ-------SCSALTGEGVQDGMNWVCK 174
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.3 bits (109), Expect = 6e-07
Identities = 36/178 (20%), Positives = 61/178 (34%), Gaps = 29/178 (16%)
Query: 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWY---LVDLPGYGYAAA 186
L+G S VGKS LL V K T G I IN + D G
Sbjct: 7 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG------ 60
Query: 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLID-ASIPAKPIDLEYASWLGQNQIPMTLVFTK 245
+ + T Y+ ++ V+ + D + + + ++ + LV K
Sbjct: 61 ----QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNK 116
Query: 246 CDK--RKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301
D R + G+ + L P+I +S+ + +EI +A+L
Sbjct: 117 SDMETRVVTADQGEALAKELG-------------IPFIESSAKNDDNVNEIFFTLAKL 161
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.9 bits (110), Expect = 6e-07
Identities = 30/174 (17%), Positives = 49/174 (28%), Gaps = 10/174 (5%)
Query: 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRE 189
+VG VGK+ LL S + ++ + L
Sbjct: 10 VVGDGAVGKTCLLISYT-TNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR 68
Query: 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249
LR T + S + ++ AK P+ LV TK D R
Sbjct: 69 LRPLSYPQTDVSLICFSLVSPASF---ENVRAKWYPEV---RHHCPNTPIILVGTKLDLR 122
Query: 250 KKKKNGGKRPEENLNDFQELIQGFFQT---APPWIMTSSVTNQGRDEILLHMAQ 300
K K E+ L A ++ S++T +G + +
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.5 bits (109), Expect = 8e-07
Identities = 26/174 (14%), Positives = 48/174 (27%), Gaps = 10/174 (5%)
Query: 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRE 189
+VG VGK+ LL S K + T + + + L A +
Sbjct: 8 VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG----LFDTAGQED 63
Query: 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249
+ V ++ K + + P LV T+ D R
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLR 120
Query: 250 KKKKNGGKRPEENLNDF-QELIQGFFQT--APPWIMTSSVTNQGRDEILLHMAQ 300
K + E + + A ++ S++T +G +
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (109), Expect = 8e-07
Identities = 33/182 (18%), Positives = 64/182 (35%), Gaps = 24/182 (13%)
Query: 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWY---LVDLP 179
D L + L+G + VGK+ L+ + T G I IN + D
Sbjct: 3 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 62
Query: 180 GYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLID-ASIPAKPIDLEYASWLGQNQIP 238
G + + T+ Y+ + + L+ + + S P L N++
Sbjct: 63 G----------QERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI 112
Query: 239 MTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHM 298
LV K D ++++ +R EE ++ TS+ + +++ L +
Sbjct: 113 TVLVGNKIDLAERREVSQQRAEEFSEAQ----------DMYYLETSAKESDNVEKLFLDL 162
Query: 299 AQ 300
A
Sbjct: 163 AC 164
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (108), Expect = 8e-07
Identities = 25/172 (14%), Positives = 57/172 (33%), Gaps = 18/172 (10%)
Query: 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRE 189
++G + VGKS LL ++ + T G I+ + +
Sbjct: 8 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG------ 61
Query: 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPID-LEYASWLGQNQIPMTLVFTKCDK 248
+ + T+ Y+ + + V+ + LE A + + + L+ K D
Sbjct: 62 -QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL 120
Query: 249 RKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
++ + E + ++ TS+ T +E ++ A+
Sbjct: 121 ESRRDVKREEGEAFAREHGL----------IFMETSAKTACNVEEAFINTAK 162
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 45.8 bits (107), Expect = 8e-07
Identities = 24/172 (13%), Positives = 45/172 (26%), Gaps = 16/172 (9%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPR 188
LVG GK++ +N + + ++ T N +I + L G R
Sbjct: 6 TLVGLQYSGKTTFVNVIASGQ----FNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFR 61
Query: 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDK 248
+ + + +K IP+ ++ K D
Sbjct: 62 SMWERYCRGVSAIVYMVDAADQEK-----IEASKNELHNLLDKPQLQGIPVLVLGNKRDL 116
Query: 249 RKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
+ NL+ Q+ + S D L + Q
Sbjct: 117 PGALDEKELIEKMNLSAIQDREICCY-------SISCKEKDNIDITLQWLIQ 161
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 45.5 bits (106), Expect = 1e-06
Identities = 19/174 (10%), Positives = 46/174 (26%), Gaps = 21/174 (12%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPR 188
++G GK+++L L + + + P + + + V G
Sbjct: 9 LILGLDGAGKTTILYRLQVGE---VVTTIPTIGFNVETVTYKNLKFQVWDLGGLT----- 60
Query: 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPID--LEYASWLGQNQIPMTLVFTKC 246
+ + Y+ N ++ V D + + + + K
Sbjct: 61 ----SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQ 116
Query: 247 DKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
D + + + TS+ G DE + + +
Sbjct: 117 DMEQAM-------TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE 163
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 1e-06
Identities = 22/174 (12%), Positives = 46/174 (26%), Gaps = 10/174 (5%)
Query: 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRE 189
+VG GK+ LL + + + T + + L G R
Sbjct: 7 IVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL 66
Query: 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249
+ + ++++ +P+ LV K D R
Sbjct: 67 RPLSYPDTDVILMCFSIDSPDSL---ENIPEKWTPEVKHFC----PNVPIILVGNKKDLR 119
Query: 250 KKKKNGGKRPEENLNDF-QELIQGFFQT--APPWIMTSSVTNQGRDEILLHMAQ 300
+ + + E + A ++ S+ T G E+ +
Sbjct: 120 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 173
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.5 bits (106), Expect = 1e-06
Identities = 20/173 (11%), Positives = 38/173 (21%), Gaps = 13/173 (7%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAP 187
L+G VGKS+L N + + D + +
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG 65
Query: 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCD 247
++ + A + ++ IP+ LV
Sbjct: 66 ENEWLHDHCMQVGDAYLIVYSITDR---ASFEKASELRIQLRRARQTEDIPIILVG---- 118
Query: 248 KRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
N E +I TS+ E+ + +
Sbjct: 119 ------NKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVR 165
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.3 bits (106), Expect = 2e-06
Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 22/181 (12%)
Query: 123 DGLPEFALVGRSNVGKSSLLNSLVRRK---KLALTSKTPGKTQCINHFRINDSWYLVDLP 179
D L +F ++G + GKS LL+ + +K T ++ IN + D
Sbjct: 3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 62
Query: 180 GYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPM 239
G + + T+ Y+ + + V+ + + + + +Q +
Sbjct: 63 G----------QERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV 112
Query: 240 TLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMA 299
++ + EL ++ TS++T + +E + A
Sbjct: 113 IILCGNKKDLDADREVTFLEASRFAQENEL---------MFLETSALTGENVEEAFVQCA 163
Query: 300 Q 300
+
Sbjct: 164 R 164
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.1 bits (105), Expect = 2e-06
Identities = 29/175 (16%), Positives = 56/175 (32%), Gaps = 13/175 (7%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAP 187
++G S VGK+SL++ V K T G ++ V A
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDK--VATMQVWDTAGQ 62
Query: 188 RELRTDWDKFTK--DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTK 245
++ F + D + + + + + L +A+ P ++ K
Sbjct: 63 ERFQSLGVAFYRGADCCVLVYDVTNASSFEN-IKSWRDEFLVHANVNSPETFPFVILGNK 121
Query: 246 CDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
D + KK ++ + L I P +TS+ D +A+
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDI--------PLFLTSAKNAINVDTAFEEIAR 168
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 45.1 bits (105), Expect = 3e-06
Identities = 34/210 (16%), Positives = 65/210 (30%), Gaps = 34/210 (16%)
Query: 126 PEFALVGRSNVGKSSLLNSLVR-----RKKLALTSKTPGKTQCINHFRINDSWYLVDLPG 180
P +++G + GK++LL+ + R+ +T ++ +L
Sbjct: 6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSI 65
Query: 181 YGYAAAPRELRT-DWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPM 239
+ T + FT + L++D + KP E + L + P
Sbjct: 66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPF 125
Query: 240 TLVFTKCDK----------------------------RKKKKNGGKRPEENLNDFQELIQ 271
+ K D+ K + GK EE +
Sbjct: 126 VVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRV 185
Query: 272 GFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301
F + I S++T +G E+L + L
Sbjct: 186 TDFASQVSIIPISAITGEGIPELLTMLMGL 215
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 3e-06
Identities = 25/176 (14%), Positives = 52/176 (29%), Gaps = 22/176 (12%)
Query: 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRE 189
L+G VGKSSL+N V K T G ++ + + +
Sbjct: 11 LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAG------ 64
Query: 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPID-----LEYASWLGQNQIPMTLVFT 244
+ + ++ + F + D+ + + YA P ++
Sbjct: 65 -QERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 123
Query: 245 KCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
K D +++ + EE ++ P+ TS+ +
Sbjct: 124 KIDISERQVS----TEEAQAWCRDNG------DYPYFETSAKDATNVAAAFEEAVR 169
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 5e-06
Identities = 22/176 (12%), Positives = 55/176 (31%), Gaps = 20/176 (11%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAP 187
+VG VGKS+L ++ + T + + + L L G
Sbjct: 8 LVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQ---- 63
Query: 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQNQIPMTLVFTK 245
++ + Y + VF + D + + +++ PM L+ K
Sbjct: 64 ----EEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNK 119
Query: 246 CDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301
D +++ + ++ + ++ S+ D+ + ++
Sbjct: 120 ADLDHQRQVTQEEGQQLARQLKV----------TYMEASAKIRMNVDQAFHELVRV 165
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.5 bits (101), Expect = 6e-06
Identities = 33/177 (18%), Positives = 54/177 (30%), Gaps = 21/177 (11%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAP 187
++G SNVGK+ L + T T G I+ + L
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDT------ 58
Query: 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLGQNQIPMTLVFTK 245
+ Y+ N +V V+ + + + E L N IP LV K
Sbjct: 59 AGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNK 118
Query: 246 CDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVT---NQGRDEILLHMA 299
CD R + ++ + P TS+ N + I + +A
Sbjct: 119 CDLRSAIQVPTDLAQKFADTHSM----------PLFETSAKNPNDNDHVEAIFMTLA 165
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (101), Expect = 6e-06
Identities = 25/173 (14%), Positives = 51/173 (29%), Gaps = 16/173 (9%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAP 187
+G +VGK+SL+ + T G + D + L A
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDT---AGQ 59
Query: 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCD 247
R+ + +D +V + S ++ + + + LV K D
Sbjct: 60 ERFRSLIPSYIRDSAAA---VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD 116
Query: 248 KRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
K++ + E + +I TS+ ++ +A
Sbjct: 117 LADKRQVSIEEGERKAKELN----------VMFIETSAKAGYNVKQLFRRVAA 159
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 43.9 bits (102), Expect = 6e-06
Identities = 23/178 (12%), Positives = 54/178 (30%), Gaps = 19/178 (10%)
Query: 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRE 189
+G N GK++LL+ L + ++ + + + G +
Sbjct: 18 FLGLDNAGKTTLLHMLK------------DDRLGQHVPTLHPTSEELTIAGMTFTTFDLG 65
Query: 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPID--LEYASWLGQNQIPMTLVFTKCD 247
+ K+Y + +V + D + + + +P+ ++ K D
Sbjct: 66 GHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKID 125
Query: 248 KR-----KKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
+ ++ + + ++ M S + QG E MAQ
Sbjct: 126 RPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 183
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.1 bits (100), Expect = 9e-06
Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 10/175 (5%)
Query: 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRE 189
+VG S GK++LL+ + F I+ + L +
Sbjct: 7 VVGDSQCGKTALLHVFA-KDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN 65
Query: 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249
+R + D L + L K E+ M LV K D R
Sbjct: 66 VRPLSYPDS-DAVLICFDISRPETLDSVLKKWKGEIQEFCPN-----TKMLLVGCKSDLR 119
Query: 250 KKKKNGGKRPEENLNDFQ-ELIQGFFQT--APPWIMTSSVTNQGRDEILLHMAQL 301
+ + + A +I S++ ++ + H+A L
Sbjct: 120 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 174
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 42.7 bits (99), Expect = 9e-06
Identities = 17/171 (9%), Positives = 44/171 (25%), Gaps = 17/171 (9%)
Query: 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRE 189
+VG GK+++L L + + + + + I+ + + D+ G
Sbjct: 5 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIS--FTVWDVGGQDKIRPLWR 62
Query: 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249
+ + + A+ + + + + K D
Sbjct: 63 HYFQNTQGLIFVVDSND--------RERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114
Query: 250 KKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
+ L + T + + G E L ++
Sbjct: 115 NAMN---AAEITDKLGLHSLRHRNW----YIQATCATSGDGLYEGLDWLSN 158
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (100), Expect = 1e-05
Identities = 26/184 (14%), Positives = 56/184 (30%), Gaps = 15/184 (8%)
Query: 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYG 182
D L + +G S VGK++ L K T G N
Sbjct: 3 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAF 62
Query: 183 YAAAPRELRTDWDKF---TKDYFLNRSTLVSVFL--LIDASIPAKPIDLEYASWLGQNQI 237
++F T +F + + +F + + + + +
Sbjct: 63 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 122
Query: 238 PMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLH 297
+ L+ K D +++ ++ E + + P+ TS+ T Q ++ +
Sbjct: 123 DIVLIGNKADLPDQREVNERQARELADKYGI----------PYFETSAATGQNVEKAVET 172
Query: 298 MAQL 301
+ L
Sbjct: 173 LLDL 176
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.9 bits (100), Expect = 1e-05
Identities = 31/177 (17%), Positives = 60/177 (33%), Gaps = 24/177 (13%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWY---LVDLPGYGYA 184
L+G S VGKS LL T G I ++ + D G
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG---- 64
Query: 185 AAPRELRTDWDKFTKDYFLNRSTLVSVFLLID-ASIPAKPIDLEYASWLGQNQIPMTLVF 243
+ + T Y+ ++ V+ + D S + L+ + + LV
Sbjct: 65 ------QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 118
Query: 244 TKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
KCD ++ + ++ + P++ TS++ + ++ L MA+
Sbjct: 119 NKCD----------LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMAR 165
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.1 bits (100), Expect = 1e-05
Identities = 16/129 (12%), Positives = 34/129 (26%), Gaps = 13/129 (10%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPR 188
VG + GK+ L L+ + T +++N++
Sbjct: 4 LFVGLCDSGKTLLFVRLLTGQ---YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGH--- 57
Query: 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWL-----GQNQIPMTLVF 243
+ + + + +V V K + L +N + +
Sbjct: 58 --ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIAC 115
Query: 244 TKCDKRKKK 252
K D K
Sbjct: 116 NKQDIAMAK 124
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 42.2 bits (98), Expect = 2e-05
Identities = 25/178 (14%), Positives = 54/178 (30%), Gaps = 18/178 (10%)
Query: 125 LPEF--ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYG 182
L +VG VGKS+L + + + T + + + L G
Sbjct: 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 61
Query: 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLV 242
+R ++ + + + V +++ + +P LV
Sbjct: 62 Q-EDYAAIRDNYFRSGEGFL-----CVFSITEMESFAATADFREQILRVKEDENVPFLLV 115
Query: 243 FTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
K D K++ +E Q ++ TS+ T D++ + +
Sbjct: 116 GNKSDLEDKRQ----------VSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMR 163
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (97), Expect = 2e-05
Identities = 29/171 (16%), Positives = 57/171 (33%), Gaps = 16/171 (9%)
Query: 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRE 189
L+G S VGKSSL+ V+ + T G ++D+ ++ A
Sbjct: 11 LLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW---DTAGQER 67
Query: 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249
+ + + + ++ D + + Q Q +V
Sbjct: 68 YHSLAPMYYRGAQ-------AAIVVYDITNEESFARAKNWVKELQRQASPNIVIALS--- 117
Query: 250 KKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
N + DFQE + ++ TS+ T+ +EI + +A+
Sbjct: 118 ---GNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 41.6 bits (96), Expect = 3e-05
Identities = 22/174 (12%), Positives = 48/174 (27%), Gaps = 21/174 (12%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPR 188
++G N GK+++L T T N + + +++ G +
Sbjct: 6 LMLGLDNAGKTTILKKFNGED-----VDTISPTLGFNIKTLEHRGFKLNIWDVGG---QK 57
Query: 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDK 248
LR+ W + + + S + + + K D
Sbjct: 58 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQ--SLLVEERLAGATLLIFANKQDL 115
Query: 249 RKKKKNGGKRPEENLNDFQELIQGFFQTAPPW--IMTSSVTNQGRDEILLHMAQ 300
+ N QE ++ + W S+VT + + +
Sbjct: 116 PGAL---------SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD 160
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 3e-05
Identities = 17/173 (9%), Positives = 34/173 (19%), Gaps = 17/173 (9%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAP 187
L+G VGKS+L + ++ G T + + L+ +
Sbjct: 4 VLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 62
Query: 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCD 247
+ T + T
Sbjct: 63 WLPGHCMAMGDAYVIVYSVT----------------DKGSFEKASELRVQLRRARQTDDV 106
Query: 248 KRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
N E +I TS+ + + + +
Sbjct: 107 PIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 159
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 5e-05
Identities = 23/175 (13%), Positives = 47/175 (26%), Gaps = 20/175 (11%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAP 187
+VG VGKS+L ++ ++ T + L L G
Sbjct: 9 LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQ---- 64
Query: 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDA--SIPAKPIDLEYASWLGQNQIPMTLVFTK 245
++ + Y + VF + D + + ++ P+ LV K
Sbjct: 65 ----EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK 120
Query: 246 CDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
D +++ + S+ DE + +
Sbjct: 121 ADLESQRQVPRSEASAFGASHHV----------AYFEASAKLRLNVDEAFEQLVR 165
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.8 bits (94), Expect = 5e-05
Identities = 22/171 (12%), Positives = 56/171 (32%), Gaps = 16/171 (9%)
Query: 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRE 189
L+G + VGKSS++ V + T G + + + + + R
Sbjct: 9 LLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRA 68
Query: 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249
L + + + + D + L+ + P ++V +
Sbjct: 69 LAPMYYRGSAAAIIV----------YDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNK 118
Query: 250 KKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
+ + E + D+ + I ++ TS+ +E+ + +++
Sbjct: 119 CDLTDVREVMERDAKDYADSIHA------IFVETSAKNAININELFIEISR 163
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (94), Expect = 6e-05
Identities = 31/173 (17%), Positives = 49/173 (28%), Gaps = 15/173 (8%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPR 188
A+ G VGKSSL+ V+ T T L G
Sbjct: 6 AVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS--HQF 63
Query: 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDK 248
F+ ++ S L + + I IP+ LV KCD+
Sbjct: 64 PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDV---ESIPIMLVGNKCDE 120
Query: 249 RKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQL 301
++ + E + F + TS+ N E+ + L
Sbjct: 121 SPSREV---QSSEAEALARTWKCAFME-------TSAKLNHNVKELFQELLNL 163
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Score = 41.4 bits (96), Expect = 6e-05
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 129 ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGY 181
++G NVGKS+L+N L ++ A T PG T ++ L+D PG
Sbjct: 116 LIIGIPNVGKSTLINRLAKKNI-AKTGDRPGITTSQQWVKVGKELELLDTPGI 167
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 7e-05
Identities = 26/183 (14%), Positives = 51/183 (27%), Gaps = 10/183 (5%)
Query: 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPG 180
P + + +VG VGK+ LL S + T ++ L G
Sbjct: 5 PGALMLKCVVVGDGAVGKTCLLMSYANDA----FPEEYVPTVFDHYAVSVTVGGKQYLLG 60
Query: 181 YGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMT 240
A + + V ++ + + +P
Sbjct: 61 LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA---PNVPFL 117
Query: 241 LVFTKCDKRKKKKNGGKRPEENLNDF-QELIQGFFQT--APPWIMTSSVTNQGRDEILLH 297
L+ T+ D R K + + E Q + A ++ S++T +G +
Sbjct: 118 LIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 177
Query: 298 MAQ 300
Sbjct: 178 AII 180
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 9e-05
Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 23/177 (12%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPG----KTQCINHFRINDSWYLVDLPGYGY 183
LVG S VGK+ LL LA T + + + ++ + + D G
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG--- 65
Query: 184 AAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVF 243
R+ + +D ++ LL D + A +++ +
Sbjct: 66 ---QERFRSVTHAYYRDAH-------ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVAL 115
Query: 244 TKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
+ + E+ + P++ TS+ T D +A+
Sbjct: 116 MLLGNKVDSAHERVVKREDGEKLAKEYGL------PFMETSAKTGLNVDLAFTAIAK 166
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (91), Expect = 1e-04
Identities = 24/171 (14%), Positives = 47/171 (27%), Gaps = 19/171 (11%)
Query: 130 LVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRE 189
LVG GK++ + + + T G F N ++
Sbjct: 8 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG 67
Query: 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249
LR + + + V P + +N IP+ L K D +
Sbjct: 68 LRDGYYIQAQCAIIMFDVTSRVT------YKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK 120
Query: 250 KKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
+K + + S+ +N ++ L +A+
Sbjct: 121 DRKVKAKSIVFHRKKNL------------QYYDISAKSNYNFEKPFLWLAR 159
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (91), Expect = 1e-04
Identities = 26/176 (14%), Positives = 56/176 (31%), Gaps = 22/176 (12%)
Query: 128 FALVGRSNVGKSSLLNSLVRRK---KLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYA 184
L+G VGK+SL+ K K T T+ +N + + D G
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG---- 61
Query: 185 AAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFT 244
+ + Y+ + + + V+ + D K + +
Sbjct: 62 ------QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVG 115
Query: 245 KCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
+K+++ + E+ + TS+ N+G +E+ L + +
Sbjct: 116 NKIDLEKERHVSIQEAESYAESVGA---------KHYHTSAKQNKGIEELFLDLCK 162
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (87), Expect = 4e-04
Identities = 26/173 (15%), Positives = 54/173 (31%), Gaps = 15/173 (8%)
Query: 128 FALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAP 187
++G VGKS+L V+ + T + L L G
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT-EQF 64
Query: 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCD 247
+R + K + + L S + + + +PM LV KCD
Sbjct: 65 TAMRDLYMKNGQGFALVYSITAQSTFNDL-----QDLREQILRVKDTEDVPMILVGNKCD 119
Query: 248 KRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
++ G ++ + + ++ +S+ + +EI + +
Sbjct: 120 LEDERVVGKEQGQNLARQWCNC---------AFLESSAKSKINVNEIFYDLVR 163
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.3 bits (85), Expect = 8e-04
Identities = 31/180 (17%), Positives = 53/180 (29%), Gaps = 19/180 (10%)
Query: 125 LPEF--ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYG 182
LP + +VG VGKS+L ++ + T + + N L L G
Sbjct: 2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAG 61
Query: 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLV 242
D FL ++ + I + PM LV
Sbjct: 62 QEEFSAMREQYMRTG--DGFLIVYSVTDKASFEHVDRFHQLI----LRVKDRESFPMILV 115
Query: 243 FTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQ-GRDEILLHMAQL 301
K D +K + +E + P+I TS+ D+ + ++
Sbjct: 116 ANKVDLMHLRKVTRDQGKEMATKYNI----------PYIETSAKDPPLNVDKTFHDLVRV 165
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.9 bits (84), Expect = 0.001
Identities = 21/178 (11%), Positives = 47/178 (26%), Gaps = 19/178 (10%)
Query: 125 LPEF--ALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYG 182
+PE ++G + GKSSL++ + + KT + + ++ G
Sbjct: 3 IPELRLGVLGDARSGKSSLIHRFL-TGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAG 61
Query: 183 YAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLV 242
D + ++ L G+ + + LV
Sbjct: 62 A-------PDAKFSGWADAVI--FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALV 112
Query: 243 FTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQ 300
T+ + ++ + T + D + +AQ
Sbjct: 113 GTQDRISASSPR--VVGDARARALCADMKRC-----SYYETCATYGLNVDRVFQEVAQ 163
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Score = 36.8 bits (84), Expect = 0.003
Identities = 37/273 (13%), Positives = 78/273 (28%), Gaps = 54/273 (19%)
Query: 79 IDDSSLS---TRILKGSNIVLSK--------YARDAQVAQAEFVKSSVRTEDCPSDGLPE 127
I++++L+ R+ +G L++ + R ++ + G+
Sbjct: 2 INEATLAESIRRLRQGERATLAQAMTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGV-- 59
Query: 128 FALVGRSNVGKSSLLNSLVRR-----KKLAL------TSKTPGKTQCINHFRINDSWYLV 176
G GKS+ L + K+A+ + T G + R+ND
Sbjct: 60 ---TGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILG-DKTRMNDLARAE 115
Query: 177 DLPGYGYAA---------APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLE 227
+ REL + D + + V A + I L+
Sbjct: 116 AAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQ 175
Query: 228 YASWLGQNQ--------IPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP- 278
A Q + +V K D + + ++ + +
Sbjct: 176 IAGGGDDLQGIKKGLMEVADLIVINKDD-----GDNHTNVAIARHMYESALHILRRKYDE 230
Query: 279 ---PWIMTSSVTNQGRDEILLHMAQLRNYWLKH 308
+ S++ +G DEI + +
Sbjct: 231 WQPRVLTCSALEKRGIDEIWHAIIDFKTALTAS 263
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Score = 36.4 bits (83), Expect = 0.003
Identities = 34/263 (12%), Positives = 75/263 (28%), Gaps = 38/263 (14%)
Query: 80 DDSSLSTRILKGSNIVLSK------YARDAQVAQAEFVKSSVRTEDCPSDGLPEFALVGR 133
D +L R+L G L++ R A + +V + + + G
Sbjct: 3 DMDTLRERLLAGDRAALARAITLAESRRADHRAAVRDLIDAVLPQ---TGRAIRVGITGV 59
Query: 134 SNVGKSSLLNSLVR----------RKKLALTSKTPGKTQCINHFRINDSW-----YLVDL 178
VGKS+ +++L + +S G + + R+ ++
Sbjct: 60 PGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPS 119
Query: 179 PGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLL-------------IDASIPAKPID 225
P G + + + + +V + + +P +
Sbjct: 120 PSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDE 179
Query: 226 LEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSS 285
L+ G ++ + K D ++ E L PP + S
Sbjct: 180 LQG-IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISG 238
Query: 286 VTNQGRDEILLHMAQLRNYWLKH 308
+ +G D + + R+
Sbjct: 239 LHGKGLDSLWSRIEDHRSKLTAT 261
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 308 | |||
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.95 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.92 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.92 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.92 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.91 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.91 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.91 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.91 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.91 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.91 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.91 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.9 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.9 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.9 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.9 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.9 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.9 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.9 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.9 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.89 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.89 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.89 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.89 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.89 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.89 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.89 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.89 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.88 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.88 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.88 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.88 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.88 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.88 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.88 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.88 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.88 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.87 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.87 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.87 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.86 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.85 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.85 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.84 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.83 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.83 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.82 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.82 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.82 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.8 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.79 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.79 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.75 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.75 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.74 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.72 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.72 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.69 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.66 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.66 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.65 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.63 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.63 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.59 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.58 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.57 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.54 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.54 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.53 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.49 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.44 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 99.39 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.36 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.36 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.34 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.3 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.26 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.14 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.13 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.8 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.6 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.57 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.17 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.16 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.03 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.95 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.88 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.86 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.85 | |
| d1lnza1 | 157 | Obg GTP-binding protein N-terminal domain {Bacillu | 97.71 | |
| d1udxa1 | 156 | Obg GTP-binding protein N-terminal domain {Thermus | 97.71 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.59 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.47 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.2 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.12 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.04 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.0 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.94 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.9 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 96.88 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 96.83 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.67 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.63 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.6 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.53 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.52 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 96.43 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.4 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.38 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.37 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 96.36 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.35 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.26 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.23 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.21 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.21 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 96.2 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.19 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 96.17 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 96.16 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.16 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 96.14 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 96.14 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 96.13 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.13 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.09 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 96.05 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 96.02 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.02 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.01 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.95 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.93 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.92 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 95.91 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.89 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 95.89 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 95.89 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.85 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.85 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 95.81 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.8 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.8 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.8 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.79 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 95.77 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 95.76 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 95.74 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 95.71 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 95.63 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 95.58 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 95.5 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.42 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.41 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 95.41 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.35 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.33 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.17 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.13 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.07 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.9 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.63 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 94.57 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.45 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.35 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.12 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.11 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.08 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.02 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 93.99 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.88 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.85 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 93.81 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.76 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.72 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.62 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.62 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.49 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.41 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 93.36 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.31 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.29 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.19 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.9 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.65 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.62 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.13 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.07 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.06 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.03 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 91.9 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 91.76 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 91.68 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 91.66 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.64 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.52 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 91.52 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.42 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 91.37 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.07 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 90.97 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 90.86 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 90.76 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 90.56 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.55 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 90.43 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.98 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.81 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 89.78 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 89.62 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 89.58 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 89.39 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 89.35 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 89.35 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 89.01 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 89.0 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 88.54 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 88.36 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 88.33 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 87.94 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 87.9 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 87.61 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 87.39 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 86.64 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 86.54 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 85.3 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 85.29 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 85.18 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 84.54 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 84.12 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 83.55 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 83.37 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 82.19 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 81.61 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 81.58 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 81.5 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 81.0 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 80.77 |
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.95 E-value=3.3e-27 Score=198.14 Aligned_cols=189 Identities=38% Similarity=0.592 Sum_probs=137.5
Q ss_pred HHHhhcccCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCc
Q 021750 108 AEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAP 187 (308)
Q Consensus 108 ~~f~~s~~~~~~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~ 187 (308)
.+|..|....++.|..+.++|+|+|.||||||||+|+|++.+..+.++..+++|...........+.++|++|.......
T Consensus 6 ~~~~~~~~~~~~~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~d~~~~~~~~~~ 85 (195)
T d1svia_ 6 SEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVS 85 (195)
T ss_dssp EEEEEEESSGGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSC
T ss_pred EEEEEecCChhHCCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccccceEEEEEeecccccc
Confidence 34556677778889999999999999999999999999997666677888888877766777778889999998664443
Q ss_pred hhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHH
Q 021750 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQ 267 (308)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~ 267 (308)
.........+...++.....++++++|+|++.+....+.++.+++...++|+++|+||+|+....+ ..+..+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~~~~-----~~~~~~~~~ 160 (195)
T d1svia_ 86 KSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGK-----WDKHAKVVR 160 (195)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGG-----HHHHHHHHH
T ss_pred ccccchhhhHHhhhhccccchhhhhhhhhccccccccccccccccccccCcceechhhccccCHHH-----HHHHHHHHH
Confidence 332333444566667777778889999999998888888889999999999999999999875432 233333343
Q ss_pred HHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 268 ELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 268 ~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+.+. .....+++++||++|+|+++++++|.++++
T Consensus 161 ~~l~--~~~~~~~~~~SA~~~~gi~el~~~i~~~l~ 194 (195)
T d1svia_ 161 QTLN--IDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp HHHT--CCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHhc--ccCCCCEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 3332 123468999999999999999999998874
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.92 E-value=8e-25 Score=181.18 Aligned_cols=168 Identities=24% Similarity=0.365 Sum_probs=118.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCc-hhhhhchHHHHHHHH-Hh
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAP-RELRTDWDKFTKDYF-LN 204 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~~~-~~ 204 (308)
.|+|+|.||||||||+|+|++.+ ..++..||+|+....+.. ..+.++||||+...... ......+...+..++ ..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~--~~~~~~~g~T~~~~~~~~-~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEW-KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 78 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC--CSSSSSTTCTTSCEEEEE-TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--ceeeCCCCEeeccccccc-ccceecccCCceeccccccccccccchhhhhhhhhc
Confidence 69999999999999999999975 347889999987666554 36889999998654322 222223333333332 34
Q ss_pred cCCccEEEEEEeCCC-----------CCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 205 RSTLVSVFLLIDASI-----------PAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 205 ~~~~~~vl~viD~~~-----------~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
...+|++++|+|+.. .....+.++..++...++|+++|+||+|+.+.. +...+.+.+.+...
T Consensus 79 ~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~-------~~~~~~~~~~~~~~ 151 (184)
T d2cxxa1 79 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-------QEVINFLAEKFEVP 151 (184)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-------HHHHHHHHHHHTCC
T ss_pred ccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhhH-------HHHHHHHHHHhccc
Confidence 455678999999863 345556667777777899999999999987532 23334444443322
Q ss_pred hc-CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 274 FQ-TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 274 ~~-~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
+. ....++++||++|+|+++|+++|.+.+.+
T Consensus 152 ~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e 183 (184)
T d2cxxa1 152 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 183 (184)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence 11 12458899999999999999999998875
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.9e-24 Score=177.84 Aligned_cols=163 Identities=13% Similarity=0.190 Sum_probs=115.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
....+||+++|.+|||||||+++|+++++.....++.. ......+.+++ .+.+||++|..+ +....
T Consensus 3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~----------~~~~~ 71 (173)
T d2fn4a1 3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEE----------FGAMR 71 (173)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTT----------TSCCH
T ss_pred CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccc----------ccccc
Confidence 34457999999999999999999999876444333332 22234455555 578899999653 22245
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHH-HH----HHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDL-EY----ASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~-~l----~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
..++..++. +++|+|.++..+.... .+ .+.....+.|+++|+||+|+...+. +..+..+.+.+..
T Consensus 72 ~~~~~~~~~---~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~----~~~~~~~~~~~~~--- 141 (173)
T d2fn4a1 72 EQYMRAGHG---FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ----VPRSEASAFGASH--- 141 (173)
T ss_dssp HHHHHHCSE---EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC----SCHHHHHHHHHHT---
T ss_pred chhhcccee---eeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccc----cchhhhhHHHHhc---
Confidence 566666554 8999999987665543 11 1222236789999999999976543 2445566665554
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHHhC
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWLKH 308 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~~~ 308 (308)
.+++++|||++|+||+++|+.|.+.+.+.+++
T Consensus 142 ---~~~~~e~Sak~g~gv~e~f~~l~~~i~k~~~~ 173 (173)
T d2fn4a1 142 ---HVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 173 (173)
T ss_dssp ---TCEEEECBTTTTBSHHHHHHHHHHHHHHHTTC
T ss_pred ---CCEEEEEeCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 37899999999999999999999999887653
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.6e-24 Score=176.15 Aligned_cols=157 Identities=12% Similarity=0.101 Sum_probs=105.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
++||+++|.+|||||||+++|.+.++ ....++.+.+. ...+.+++ .+.+|||||.. .+..++..|
T Consensus 1 ifKi~lvG~~~vGKTsLi~~~~~~~~-~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~e----------~~~~~~~~~ 68 (168)
T d2gjsa1 1 VYKVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQD----------GGRWLPGHC 68 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHTC----------CEEE-EEEEEETTEEEEEEEEECC-----------------CHHHH
T ss_pred CeEEEEECCCCcCHHHHHHHHhCCcc-CCcCCeeeeee-cceeeccccccceeeeeccccc----------ccceecccc
Confidence 36999999999999999999998754 22222223222 23444554 68899999953 344567777
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHH-HHH----HhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLE-YAS----WLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~-l~~----~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
++.++ ++++|+|.++..+..+.. +.. ......+|+++|+||+|+.+.++ +...+.+++.+.++
T Consensus 69 ~~~~d---~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~----v~~~~~~~~~~~~~----- 136 (168)
T d2gjsa1 69 MAMGD---AYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE----VSVDEGRACAVVFD----- 136 (168)
T ss_dssp HTSCS---EEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCC----SCHHHHHHHHHHHT-----
T ss_pred hhhhh---hhceeccccccccccccccccchhhcccccccceEEEeecccchhhhcc----hhHHHHHHHHHhcC-----
Confidence 76655 489999999876655431 111 11235689999999999986543 35666777766664
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
+++++|||++|.||+++|+.|.+.+...+
T Consensus 137 -~~~~e~Sak~~~~v~~~f~~l~~~i~~~~ 165 (168)
T d2gjsa1 137 -CKFIETSAALHHNVQALFEGVVRQIRLRR 165 (168)
T ss_dssp -SEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred -CEEEEEeCCCCcCHHHHHHHHHHHHHHHh
Confidence 78999999999999999999998776544
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.91 E-value=1.2e-24 Score=177.40 Aligned_cols=152 Identities=21% Similarity=0.243 Sum_probs=113.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||+++|+++++.....++.+.+.....+..++ .+.+|||+|..+.. .+...++
T Consensus 3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----------~~~~~~~ 72 (164)
T d1z2aa1 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFD----------AITKAYY 72 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTT----------CCCHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchh----------hhhhhhh
Confidence 4899999999999999999998876666666666665555555554 68899999964322 2334555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+.+ +++++|+|.++..+..+. ..|+. ..++|+++|+||+|+.+.+. +..++++.+.+.++
T Consensus 73 ~~~---~~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~----v~~~~~~~~~~~~~------ 137 (164)
T d1z2aa1 73 RGA---QACVLVFSTTDRESFEAI--SSWREKVVAEVGDIPTALVQNKIDLLDDSC----IKNEEAEGLAKRLK------ 137 (164)
T ss_dssp TTC---CEEEEEEETTCHHHHHTH--HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----SCHHHHHHHHHHHT------
T ss_pred ccC---ceEEEEEeccchhhhhhc--ccccccccccCCCceEEEeeccCCccccee----eeehhhHHHHHHcC------
Confidence 544 458999999987665543 23332 25799999999999986553 35566777776654
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
++++++||++|.||+++|++|.+.+
T Consensus 138 ~~~~e~Sak~g~~v~e~f~~l~~~~ 162 (164)
T d1z2aa1 138 LRFYRTSVKEDLNVSEVFKYLAEKH 162 (164)
T ss_dssp CEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred CEEEEeccCCCcCHHHHHHHHHHHH
Confidence 7899999999999999999998765
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.91 E-value=2.8e-24 Score=176.14 Aligned_cols=156 Identities=16% Similarity=0.214 Sum_probs=115.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||+++|+++++.....+..+.+.....+.... .+.+|||||.. ++..++..+
T Consensus 5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e----------~~~~~~~~~ 74 (169)
T d3raba_ 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE----------RYRTITTAY 74 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHHHTT
T ss_pred EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCch----------hhHHHHHHH
Confidence 47999999999999999999999876666666677666655555554 58899999943 455566666
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHH-HH---HHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLE-YA---SWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~-l~---~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+..+ +++++|+|.++..+..... +. ........|+++|+||+|+..... +..+.++.+.+.++
T Consensus 75 ~~~a---d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----v~~~~~~~~~~~~~------ 141 (169)
T d3raba_ 75 YRGA---MGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----VSSERGRQLADHLG------ 141 (169)
T ss_dssp TTTC---CEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCC----SCHHHHHHHHHHHT------
T ss_pred HhcC---CEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccc----cchhhhHHHHHHcC------
Confidence 5544 4589999999865544321 11 112236788999999999876543 35566666666654
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.++++|||++|+||+++|++|.+.+.
T Consensus 142 ~~~~e~Sak~g~gv~e~f~~l~~~i~ 167 (169)
T d3raba_ 142 FEFFEASAKDNINVKQTFERLVDVIC 167 (169)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 78999999999999999999998764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=3e-24 Score=176.20 Aligned_cols=156 Identities=20% Similarity=0.269 Sum_probs=113.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||+++|+++++.....+..+.+.....+.+++ ++.+|||||.. ++..++..|
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e----------~~~~~~~~~ 74 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE----------RFRSITQSY 74 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHHGGG
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCch----------hhHHHHHHH
Confidence 47999999999999999999999876554555555555555666655 57889999942 455677666
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+..++ ++++|+|.++..+.... ++...+ .....|+++|+||+|+.+... +..+.++++.+..+
T Consensus 75 ~~~~~---~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~----v~~~~~~~~~~~~~------ 141 (171)
T d2ew1a1 75 YRSAN---ALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERRE----VSQQRAEEFSEAQD------ 141 (171)
T ss_dssp STTCS---EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----SCHHHHHHHHHHHT------
T ss_pred Hhccc---eEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccc----hhhhHHHHHHHhCC------
Confidence 65544 48999999876554432 111211 235789999999999876543 34556666666553
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+++++|||++|+||+++|.+|.+.+-
T Consensus 142 ~~~~~~SAktg~gV~e~f~~l~~~l~ 167 (171)
T d2ew1a1 142 MYYLETSAKESDNVEKLFLDLACRLI 167 (171)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CEEEEEccCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999988775543
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=1.9e-24 Score=178.60 Aligned_cols=159 Identities=25% Similarity=0.269 Sum_probs=114.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
..|+|+|.+|||||||+|+|++.+. ..++..+++|.... .....+ ++.++||||+........ ..+...++
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~-~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~-----~~~~~~~~ 79 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKV-APISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALG-----EFMDQEVY 79 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCC-SCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHH-----HHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc-eeecccCCcccccccceeeeeeeeeeecccccccccccccc-----hhcccccc
Confidence 3799999999999999999999753 55677777776432 233333 799999999865432221 11333344
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhcc--CCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQ--NQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPW 280 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~--~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (308)
.....+|++++|+|++.+....+..+..++.. .++|+++|+||+|+.+.. ++ ..+.+.+.++ ...+
T Consensus 80 ~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~-------~~----~~~~~~~~~~-~~~~ 147 (178)
T d1wf3a1 80 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYP-------EE----AMKAYHELLP-EAEP 147 (178)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSH-------HH----HHHHHHHTST-TSEE
T ss_pred cccccccceeeeechhhhhcccccchhhheeccccchhhhhhhcccccccCH-------HH----HHHHHHhhcc-cCce
Confidence 45566788999999999888877767777654 578999999999997532 22 2233333332 3578
Q ss_pred EEeecCCCCCHHHHHHHHHHHH
Q 021750 281 IMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 281 ~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+++||++|+|+++|+++|.+.+
T Consensus 148 ~~iSA~~~~gi~~L~~~i~~~l 169 (178)
T d1wf3a1 148 RMLSALDERQVAELKADLLALM 169 (178)
T ss_dssp EECCTTCHHHHHHHHHHHHTTC
T ss_pred EEEecCCCCCHHHHHHHHHHhC
Confidence 9999999999999999998765
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.91 E-value=6.6e-24 Score=173.82 Aligned_cols=155 Identities=16% Similarity=0.220 Sum_probs=112.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||+++++++++...+.++.+.... ..+.+++ .+.+||++|.. ++..+...+
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~-~~~~~~~~~~~l~i~d~~g~~----------~~~~~~~~~ 72 (168)
T d1u8za_ 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQE----------DYAAIRDNY 72 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC-------------CHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc-ccccccccccccccccccccc----------chhhhhhhc
Confidence 469999999999999999999988765555555554332 3344554 57889999964 344466777
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+..+++ +++|+|.++..+.... ++.+.....+.|+++|+||+|+.+.+. +..++++.+.+.++
T Consensus 73 ~~~~~~---~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~----v~~~~~~~~~~~~~----- 140 (168)
T d1u8za_ 73 FRSGEG---FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----VSVEEAKNRADQWN----- 140 (168)
T ss_dssp HHHCSE---EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC----SCHHHHHHHHHHHT-----
T ss_pred ccccce---eEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEecccccccccc----ccHHHHHHHHHHcC-----
Confidence 777654 8999999987665443 112222246889999999999876543 45666777766664
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+++++|||++|.||+++|++|.+.+.
T Consensus 141 -~~~~e~Sak~g~gv~e~f~~l~~~i~ 166 (168)
T d1u8za_ 141 -VNYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp -CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -CeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence 78999999999999999999987664
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=7.2e-24 Score=173.88 Aligned_cols=158 Identities=14% Similarity=0.221 Sum_probs=112.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+|+|.+|||||||+++++++.+.....++.+... ...+.+++ .+.+||++|..+ +......+
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~----------~~~~~~~~ 73 (171)
T d2erya1 5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCVIDDRAARLDILDTAGQEE----------FGAMREQY 73 (171)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEE-EEEEEETTEEEEEEEEECC--------------CCHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccce-eeeeeeccccccccccccccccc----------cccccccc
Confidence 36999999999999999999999876554445544322 33444554 588999999653 33355666
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+..++ ++++|+|.+++.+.... ++.........|+++|+||+|+...+. +..++++++.+.++
T Consensus 74 ~~~~~---~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~----v~~~~~~~~~~~~~----- 141 (171)
T d2erya1 74 MRTGE---GFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQ----VTQEEGQQLARQLK----- 141 (171)
T ss_dssp HHHCS---EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCS----SCHHHHHHHHHHTT-----
T ss_pred ccccc---eEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhcc----chHHHHHHHHHHcC-----
Confidence 66654 48999999987665443 122223346799999999999976543 35566667666553
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
++|++|||++|.||+++|+.|.+.+.+++
T Consensus 142 -~~~~e~Sak~~~~i~e~f~~l~~~i~k~~ 170 (171)
T d2erya1 142 -VTYMEASAKIRMNVDQAFHELVRVIRKFQ 170 (171)
T ss_dssp -CEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred -CEEEEEcCCCCcCHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999987654
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=5.4e-24 Score=173.27 Aligned_cols=152 Identities=16% Similarity=0.205 Sum_probs=111.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++|+++++.....+..+..........++ .+.+||++|.. ++......++
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~~~~~~ 70 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE----------RFRSLIPSYI 70 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSG----------GGGGGHHHHH
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcc----------hhccchHHHh
Confidence 5899999999999999999999876555555555555555555554 57899999954 3334566666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
..++ ++++|+|.++..+.... ..|+. ..+.|+++|+||+|+.+... +..++.+.+.+.++
T Consensus 71 ~~~~---~~ilv~d~~~~~s~~~i--~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----~~~~~~~~~~~~~~----- 136 (164)
T d1yzqa1 71 RDSA---AAVVVYDITNVNSFQQT--TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----VSIEEGERKAKELN----- 136 (164)
T ss_dssp TTCS---EEEEEEETTCHHHHHTH--HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----SCHHHHHHHHHHTT-----
T ss_pred hccc---eEEEeeccccccchhhh--HhhHHHHHHhcCCCceEEEEecccchhhhhh----hhHHHHHHHHHHcC-----
Confidence 6554 48999999987665443 22221 25799999999999976543 24445555555543
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+++++|||++|+||+++|++|.+.+
T Consensus 137 -~~~~e~SAk~g~~v~e~f~~i~~~l 161 (164)
T d1yzqa1 137 -VMFIETSAKAGYNVKQLFRRVAAAL 161 (164)
T ss_dssp -CEEEECCTTTCTTHHHHHHHHHHHS
T ss_pred -CEEEEecCCCCcCHHHHHHHHHHhh
Confidence 7899999999999999999998764
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=9.3e-24 Score=174.54 Aligned_cols=160 Identities=17% Similarity=0.227 Sum_probs=105.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE-EEEEEe--CCCEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC-INHFRI--NDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~-~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
++|+|+|.+|||||||+|+|++.+. .......+++.. ...... +.++.+|||||+.+.....+ . ....++
T Consensus 2 ~~VaivG~~nvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~--~----~~~~~l 74 (180)
T d1udxa2 2 ADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGK--G----LGLEFL 74 (180)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSC--C----SCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-ceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHH--H----HHHHHH
Confidence 5799999999999999999998753 333333333322 222222 23699999999865322111 1 222344
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
.....++++++++|..............++. ..++|+++|+||+|+.+. +..+.+.+.+.. ..
T Consensus 75 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~---------~~~~~~~~~~~~---~~ 142 (180)
T d1udxa2 75 RHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---------EAVKALADALAR---EG 142 (180)
T ss_dssp HHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---------HHHHHHHHHHHT---TT
T ss_pred HHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhH---------HHHHHHHHHHHh---cC
Confidence 4455667799999987543222222222322 246899999999999853 334555555543 35
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.++|++||++|+|+++|++.|.++++.
T Consensus 143 ~~~~~iSA~tg~gid~L~~~i~~~l~~ 169 (180)
T d1udxa2 143 LAVLPVSALTGAGLPALKEALHALVRS 169 (180)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 789999999999999999999998864
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2e-23 Score=170.41 Aligned_cols=153 Identities=19% Similarity=0.271 Sum_probs=109.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++|+++.+.....++.+...... +...+ .+.+||++|.. .+......++
T Consensus 4 ~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~----------~~~~~~~~~~ 72 (166)
T d1ctqa_ 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQE----------EYSAMRDQYM 72 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCG----------GGHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eeeeceeeeeeeeeccCcc----------ccccchhhhh
Confidence 6899999999999999999999876544444444333332 23333 57889999954 3344566666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..++. +++|+|.++..+.... .+.+.....++|+++|+||+|+.... +..+.++.+.+..+
T Consensus 73 ~~~~~---~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~------ 138 (166)
T d1ctqa_ 73 RTGEG---FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAART-----VESRQAQDLARSYG------ 138 (166)
T ss_dssp HHCSE---EEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCC-----SCHHHHHHHHHHHT------
T ss_pred hcccc---cceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccccc-----ccHHHHHHHHHHhC------
Confidence 66554 8999999987655443 11222223578999999999987543 35566666766654
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+++++|||++|+||+++|.+|.+.+.
T Consensus 139 ~~~~e~Sak~g~gi~e~f~~i~~~i~ 164 (166)
T d1ctqa_ 139 IPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence 78999999999999999999988764
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.6e-23 Score=170.90 Aligned_cols=155 Identities=18% Similarity=0.257 Sum_probs=112.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+|+|.+|||||||+++++++++.....+..+.+.....+..++ .+.+|||||.. .+..+...+
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~----------~~~~~~~~~ 73 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE----------RFRAVTRSY 73 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG----------GTCHHHHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCch----------hHHHHHHHH
Confidence 47999999999999999999999876555555555555555566655 68899999953 344567777
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHH-HHHH---hccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLE-YASW---LGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~-l~~~---~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+..++. +++|+|.++..+..... +... ......|+++|+||+|+..... +..+.++.+.+.. .
T Consensus 74 ~~~~d~---~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----~~~~~~~~~~~~~------~ 140 (166)
T d1z0fa1 74 YRGAAG---ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRD----VTYEEAKQFAEEN------G 140 (166)
T ss_dssp HHTCSE---EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----SCHHHHHHHHHHT------T
T ss_pred hcCCcE---EEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcc----cHHHHHHHHHHHc------C
Confidence 776554 89999998765544321 1111 1236789999999999876543 2444555555444 3
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+++++|||++|+||+++|++|.+.+
T Consensus 141 ~~~~e~Saktg~~v~e~f~~i~~~i 165 (166)
T d1z0fa1 141 LLFLEASAKTGENVEDAFLEAAKKI 165 (166)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988754
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=8.2e-23 Score=169.37 Aligned_cols=171 Identities=23% Similarity=0.311 Sum_probs=117.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchh--hhhchHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRE--LRTDWDKFTK 199 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~--~~~~~~~~~~ 199 (308)
.+||+++|.+|||||||+|+|++.+. ..++..++++... ..+.+++ .+.++|+||+........ ..........
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 86 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKER-ALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 86 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTT-EEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc-ceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHHH
Confidence 46999999999999999999999753 5567777776654 3444554 789999999854211100 0011111222
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh--cCC
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF--QTA 277 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 277 (308)
.++ ..+|++++|+|++.+.......+..++...++|+|+|+||+|+....+ ...+++.+.+.+.+ ...
T Consensus 87 ~~~---~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~-------~~~~~~~~~~~~~~~~~~~ 156 (186)
T d1mkya2 87 DSI---EKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHRE-------KRYDEFTKLFREKLYFIDY 156 (186)
T ss_dssp HHH---HHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGG-------GCHHHHHHHHHHHCGGGTT
T ss_pred HHH---hcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhhcchh-------hhhhhHHHHHHHHhcccCC
Confidence 222 335679999999999888888888888888999999999999876543 22344444443322 234
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+++++||++|.|+++|+++|.+.++.|.
T Consensus 157 ~~i~~vSa~~g~gv~~L~~~i~~~~~~~~ 185 (186)
T d1mkya2 157 SPLIFTSADKGWNIDRMIDAMNLAYASYT 185 (186)
T ss_dssp SCEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence 78999999999999999999999999875
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.6e-23 Score=170.16 Aligned_cols=157 Identities=17% Similarity=0.126 Sum_probs=113.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
..||+++|.+|||||||+++++++++.....++.+...... ...++ .+.+||++|... + .....|
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~-~~~~~~~~~l~i~D~~g~~~----------~-~~~~~~ 69 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ-ATIDDEVVSMEILDTAGQED----------T-IQREGH 69 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE-EEETTEEEEEEEEECCCCCC----------C-HHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccc-ccccccceEEEEeecccccc----------c-ccchhh
Confidence 35999999999999999999999876555555555443322 23343 688999999532 1 133456
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHH-HHH----hccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEY-ASW----LGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l-~~~----~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
++.+++ +++|+|.+++.+.....- ..+ ....+.|+++|+||+|+.+.+. +..++++++.+.++
T Consensus 70 ~~~~~~---~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~----V~~~e~~~~a~~~~----- 137 (168)
T d2atva1 70 MRWGEG---FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQ----VSTEEGEKLATELA----- 137 (168)
T ss_dssp HHHCSE---EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC----SCHHHHHHHHHHHT-----
T ss_pred hccccc---ceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhcc----CcHHHHHHHHHHhC-----
Confidence 665554 899999998766555421 111 2236799999999999976543 45667777777664
Q ss_pred CCCEEEeecCCCC-CHHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQ-GRDEILLHMAQLRNYWL 306 (308)
Q Consensus 277 ~~~~~~vSA~~g~-gi~el~~~i~~~~~~~~ 306 (308)
++|+++||++|+ ||+++|..|.+.+.+++
T Consensus 138 -~~~~e~Saktg~gnV~e~F~~l~~~i~~~r 167 (168)
T d2atva1 138 -CAFYECSACTGEGNITEIFYELCREVRRRR 167 (168)
T ss_dssp -SEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred -CeEEEEccccCCcCHHHHHHHHHHHHHHhc
Confidence 789999999998 59999999998776543
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.7e-23 Score=170.87 Aligned_cols=156 Identities=17% Similarity=0.211 Sum_probs=111.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||+++|+++++.....++.+.. .......++ .+.+||++|.. .+......|
T Consensus 3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~~~d~~g~~----------~~~~~~~~~ 71 (167)
T d1kaoa_ 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTE----------QFASMRDLY 71 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTT----------CCHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeee-eeeeeecCcceEeeccccCCCcc----------ccccchHHH
Confidence 3699999999999999999999987654444444432 233344444 68889999953 334466667
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHH-H----HHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLE-Y----ASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~-l----~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+..++. +++|+|.++..+..+.. + .......++|+++|+||+|+.+.+. +..+..+.+.+.++
T Consensus 72 ~~~a~~---~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~----~~~~~~~~~~~~~~----- 139 (167)
T d1kaoa_ 72 IKNGQG---FILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESERE----VSSSEGRALAEEWG----- 139 (167)
T ss_dssp HHHCSE---EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC----SCHHHHHHHHHHHT-----
T ss_pred hhcccc---eeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhccc----chHHHHHHHHHHcC-----
Confidence 776654 89999999876655431 1 1112235789999999999986543 24455666665553
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.++++|||++|.||+++|++|.+.+..
T Consensus 140 -~~~~e~Sak~g~~i~e~f~~i~~~i~~ 166 (167)
T d1kaoa_ 140 -CPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp -SCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred -CeEEEECCCCCcCHHHHHHHHHHHHcc
Confidence 789999999999999999999887653
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=1.1e-23 Score=172.05 Aligned_cols=154 Identities=17% Similarity=0.270 Sum_probs=112.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++|+++++.....++.+..........+. .+.+|||+|.. ++..+...|+
T Consensus 5 ~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~~~~~~ 74 (167)
T d1z0ja1 5 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE----------RFRALAPMYY 74 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGTHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCch----------hhhHHHHHHH
Confidence 5899999999999999999999877555555556555544454444 46799999954 2333556666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHH----HHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYA----SWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~----~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
...+ ++++|+|.+++.++...+.. ........|+++|+||+|+.+.+. +..++.+++.+.++ +
T Consensus 75 ~~~~---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----v~~~~~~~~~~~~~------~ 141 (167)
T d1z0ja1 75 RGSA---AAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----VMERDAKDYADSIH------A 141 (167)
T ss_dssp TTCS---EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----SCHHHHHHHHHHTT------C
T ss_pred hhcc---ceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccc----hhHHHHHHHHHHcC------C
Confidence 5554 48999999877665553211 111236889999999999976543 35556666665543 7
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+|++|||++|.||+++|.+|.+.+
T Consensus 142 ~~~e~SAk~~~nV~e~f~~l~~~i 165 (167)
T d1z0ja1 142 IFVETSAKNAININELFIEISRRI 165 (167)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEEEecCCCCCHHHHHHHHHHhC
Confidence 899999999999999999998764
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=6.6e-24 Score=174.47 Aligned_cols=161 Identities=17% Similarity=0.222 Sum_probs=104.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC----CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND----SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
.+||+++|.+|||||||+++|+++++.....++.+.+.........+ .+.+|||+|..+ +...+..
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~----------~~~~~~~ 71 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER----------FQSLGVA 71 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC--------------------C
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchh----------hhhHHHH
Confidence 47999999999999999999999876555555555544443333332 478899999532 2223334
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG 272 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 272 (308)
++. .++++++|+|.++..+.... ++..+.. ..++|+++|+||+|+.+.+.. +..+..+++.+.++
T Consensus 72 ~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~---v~~~~~~~~~~~~~- 144 (175)
T d1ky3a_ 72 FYR---GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI---VSEKSAQELAKSLG- 144 (175)
T ss_dssp CST---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC---SCHHHHHHHHHHTT-
T ss_pred Hhh---ccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcc---hhHHHHHHHHHHcC-
Confidence 433 34558999999887655432 1122211 247899999999999764321 24555666655543
Q ss_pred hhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 273 FFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 273 ~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
..+|++|||++|.||+++|++|.+.+-+.+
T Consensus 145 ----~~~~~e~SA~~g~gv~e~f~~l~~~~l~~~ 174 (175)
T d1ky3a_ 145 ----DIPLFLTSAKNAINVDTAFEEIARSALQQN 174 (175)
T ss_dssp ----SCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred ----CCeEEEEeCCCCcCHHHHHHHHHHHHHhcc
Confidence 378999999999999999999988665543
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=6.8e-24 Score=173.35 Aligned_cols=154 Identities=19% Similarity=0.234 Sum_probs=110.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+|+|.+|||||||+++|+++++.....++.+..........++ .+.+||++|..+ +..++..++
T Consensus 4 fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~----------~~~~~~~~~ 73 (167)
T d1z08a1 4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER----------FHALGPIYY 73 (167)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------CCSS
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcce----------ecccchhhc
Confidence 6999999999999999999999877655566666665555555554 578999999642 223444444
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH-HHHH---hccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE-YASW---LGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~-l~~~---~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
..+ +++++|+|.+++.++.... +... ......|+++|+||+|+.+.+. +..++++.+.+.++ +
T Consensus 74 ~~~---~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~----v~~~e~~~~a~~~~------~ 140 (167)
T d1z08a1 74 RDS---NGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERH----VSIQEAESYAESVG------A 140 (167)
T ss_dssp TTC---SEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----SCHHHHHHHHHHTT------C
T ss_pred cCC---ceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccc----cchHHHHHHHHHcC------C
Confidence 444 4599999999877665531 1111 1135788999999999987654 45666777666553 7
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
++++|||++|.||+++|++|.+.+
T Consensus 141 ~~~e~Sak~~~~v~e~F~~l~~~i 164 (167)
T d1z08a1 141 KHYHTSAKQNKGIEELFLDLCKRM 164 (167)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEEecCCCcCHHHHHHHHHHHH
Confidence 899999999999999999998765
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2e-23 Score=171.08 Aligned_cols=155 Identities=18% Similarity=0.210 Sum_probs=110.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||+++|+++++.....++.+... ......++ .+.+||++|.. .+......+
T Consensus 2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~----------~~~~~~~~~ 70 (171)
T d2erxa1 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH----------QFPAMQRLS 70 (171)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCS----------SCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccc----------ccccccccc
Confidence 36999999999999999999999876444444444322 22334444 57789999954 344566677
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHH----HHhc-cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYA----SWLG-QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~----~~~~-~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
+..+++ +++|+|.++..+.... .+. .... ..++|+++|+||+|+...++ +..++++++.+.++
T Consensus 71 ~~~a~~---~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~----v~~~e~~~~~~~~~---- 139 (171)
T d2erxa1 71 ISKGHA---FILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----VQSSEAEALARTWK---- 139 (171)
T ss_dssp HHHCSE---EEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----SCHHHHHHHHHHHT----
T ss_pred ccceeE---EEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeeccccccccc----ccHHHHHHHHHHcC----
Confidence 776654 8999999976554442 111 1111 26789999999999976543 45566777776664
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+++++|||++|+||+++|+.|.+++.
T Consensus 140 --~~~~e~Sak~~~~v~e~f~~l~~~~~ 165 (171)
T d2erxa1 140 --CAFMETSAKLNHNVKELFQELLNLEK 165 (171)
T ss_dssp --CEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred --CeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence 78999999999999999999987654
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=1e-23 Score=172.82 Aligned_cols=162 Identities=22% Similarity=0.198 Sum_probs=106.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
.|+++|.+|||||||+|+|++.+. ..++..+++|... ..+.... .+.++|+||+..... .. ........+..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~-~~---~~~~~~~~~~~ 76 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ-DI---ISQKMKEVTLN 76 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGG-GC---CCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc-ceecccCceeeccccccccccccccccccccceeeeec-cc---ccccccccccc
Confidence 699999999999999999998653 5567777777653 2333333 789999999865321 11 11112223333
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEe
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 283 (308)
....+|++++++|++.+....+..+..++...++|+++|+||+|+.+.. .. +..+.+... ...+++++
T Consensus 77 ~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~~---------~~-~~~~~~~~~--~~~~~i~i 144 (171)
T d1mkya1 77 MIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREF---------ER-EVKPELYSL--GFGEPIPV 144 (171)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHH---------HH-HTHHHHGGG--SSCSCEEC
T ss_pred ccccCcEEEEeecccccccccccccccccccccccccccchhhhhhhhh---------hh-HHHHHHHhc--CCCCeEEE
Confidence 3455677999999998888888888888887889999999999987432 11 222222111 23577999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHH
Q 021750 284 SSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 284 SA~~g~gi~el~~~i~~~~~~~ 305 (308)
||++|.|+++|+++|.+.+.+.
T Consensus 145 SAk~g~gid~L~~~i~~~l~e~ 166 (171)
T d1mkya1 145 SAEHNINLDTMLETIIKKLEEK 166 (171)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHT
T ss_pred ecCCCCCHHHHHHHHHHhCCCC
Confidence 9999999999999999988754
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.9e-23 Score=173.55 Aligned_cols=157 Identities=19% Similarity=0.260 Sum_probs=113.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-------------CCEEEecCCCcccCCCchhhh
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-------------DSWYLVDLPGYGYAAAPRELR 191 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-------------~~~~liDtpG~~~~~~~~~~~ 191 (308)
.+||+++|.+|||||||+++|+++++.....++++.+.....+.++ ..+.+|||+|. +
T Consensus 5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~-------e-- 75 (186)
T d2f7sa1 5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ-------E-- 75 (186)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH-------H--
T ss_pred EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcc-------h--
Confidence 4699999999999999999999987654444444433322222221 14789999994 2
Q ss_pred hchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhc-------cCCCCEEEEeecCCCCCcccCCCCCchhhHH
Q 021750 192 TDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLG-------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLN 264 (308)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~ 264 (308)
++..++..++..++ ++++|+|.++..+.... ..|.. ....|+++|+||+|+...++ +..+.++
T Consensus 76 -~~~~~~~~~~~~~~---~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----v~~~e~~ 145 (186)
T d2f7sa1 76 -RFRSLTTAFFRDAM---GFLLMFDLTSQQSFLNV--RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----VNERQAR 145 (186)
T ss_dssp -HHHHHHHHHHTTCC---EEEEEEETTCHHHHHHH--HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----SCHHHHH
T ss_pred -hhHHHHHHHHhcCC---EEEEEEeccccccceee--eeccchhhhhccCCCceEEEEeeeccchhhhc----chHHHHH
Confidence 56677888776654 49999999876555443 34443 14578999999999986554 4556666
Q ss_pred HHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 265 DFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
++.+.++ +++++|||++|+||+++|++|.+.+.+..
T Consensus 146 ~~~~~~~------~~~~e~Sak~~~~i~e~f~~l~~~i~~k~ 181 (186)
T d2f7sa1 146 ELADKYG------IPYFETSAATGQNVEKAVETLLDLIMKRM 181 (186)
T ss_dssp HHHHHTT------CCEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred HHHHHcC------CEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 6666543 78999999999999999999999876544
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=4.7e-23 Score=168.80 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=114.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||+++++++++.....++.+... ...+..++ .+.+||++|... +..+...|
T Consensus 4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~----------~~~~~~~~ 72 (169)
T d1x1ra1 4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEE----------FSAMREQY 72 (169)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGG----------GCSSHHHH
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccc----------cccchhhh
Confidence 36999999999999999999999876544444444332 23344444 578999999643 22355667
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
++.+++ +++|+|.+++.++... ++.+.....+.|+++|+||+|+...+. +..++++++.+.++
T Consensus 73 ~~~~~~---~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~----v~~e~~~~~~~~~~----- 140 (169)
T d1x1ra1 73 MRTGDG---FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK----VTRDQGKEMATKYN----- 140 (169)
T ss_dssp HHHCSE---EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC----SCHHHHHHHHHHHT-----
T ss_pred hhhccE---EEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhce----eehhhHHHHHHHcC-----
Confidence 776654 8999999987665543 122223346899999999999987654 45667777777765
Q ss_pred CCCEEEeecCCCC-CHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQ-GRDEILLHMAQLRNY 304 (308)
Q Consensus 277 ~~~~~~vSA~~g~-gi~el~~~i~~~~~~ 304 (308)
++|+++||+++. ||+++|+.|.+.+.+
T Consensus 141 -~~~~e~Sak~~~~nV~~~F~~l~~~i~~ 168 (169)
T d1x1ra1 141 -IPYIETSAKDPPLNVDKTFHDLVRVIRQ 168 (169)
T ss_dssp -CCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred -CEEEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence 789999999986 999999999987654
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.8e-23 Score=171.32 Aligned_cols=154 Identities=18% Similarity=0.224 Sum_probs=113.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++|+++++.....++.+.+.....+..++ .+.+||++|.. .+..++..++
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~----------~~~~~~~~~~ 76 (170)
T d1r2qa_ 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE----------RYHSLAPMYY 76 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCch----------hhhhhHHHHh
Confidence 5999999999999999999998876555666666665544555544 58899999953 3444666777
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHH-HHH---hccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEY-ASW---LGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l-~~~---~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
+.++ ++++++|.++..+...... ... ....+.|+++|+||+|+...+. +..+..+++.+.. .+
T Consensus 77 ~~~~---~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----v~~e~~~~~~~~~------~~ 143 (170)
T d1r2qa_ 77 RGAQ---AAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRA----VDFQEAQSYADDN------SL 143 (170)
T ss_dssp TTCS---EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----SCHHHHHHHHHHT------TC
T ss_pred hCcc---eEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeeccccccccccc----ccHHHHHHHHHhc------CC
Confidence 6554 4899999987766544321 111 1236789999999999976654 3556666665554 37
Q ss_pred CEEEeecCCCCCHHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+|++|||++|+||+++|+.|.+.+
T Consensus 144 ~~~e~SAk~g~~V~e~f~~l~~~i 167 (170)
T d1r2qa_ 144 LFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHTS
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999998754
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.9e-23 Score=170.62 Aligned_cols=158 Identities=18% Similarity=0.227 Sum_probs=110.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||+++|+++++.....++.+.+.....+..++ .+.+|||||.. ++..+++.+
T Consensus 5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~ 74 (174)
T d2bmea1 5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE----------RFRSVTRSY 74 (174)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHHHTT
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCch----------hhhhhHHHH
Confidence 46999999999999999999998876544455555554444444444 68899999943 455566665
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHH-HHH---HhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLE-YAS---WLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~-l~~---~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+.. ++++++|+|.++..+..... +.. .....+.|+++|+||+|+..... ...+....+.+.. .
T Consensus 75 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----~~~~~~~~~~~~~------~ 141 (174)
T d2bmea1 75 YRG---AAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADRE----VTFLEASRFAQEN------E 141 (174)
T ss_dssp STT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----SCHHHHHHHHHHT------T
T ss_pred hhh---CCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhc----hhhhHHHHHHHhC------C
Confidence 544 44599999999765544321 111 11235799999999999876543 2344445554443 3
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
+++++|||++|+|++++|+++.+.+-+.
T Consensus 142 ~~~~e~Sak~~~gi~e~f~~l~~~i~~~ 169 (174)
T d2bmea1 142 LMFLETSALTGENVEEAFVQCARKILNK 169 (174)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CEEEEeeCCCCcCHHHHHHHHHHHHHHH
Confidence 7899999999999999999998765443
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.89 E-value=6.1e-23 Score=169.79 Aligned_cols=160 Identities=23% Similarity=0.252 Sum_probs=108.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceec-----cCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALT-----SKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKF 197 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~-----~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~ 197 (308)
.+|+++|++|+|||||+|+|++....... +...|.+... ..+..++ .+.++|+||.. . +
T Consensus 6 inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~----------~---~ 72 (179)
T d1wb1a4 6 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA----------D---L 72 (179)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH----------H---H
T ss_pred EEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCcccccccccccc----------c---c
Confidence 48999999999999999999975321111 1112222221 2222333 68889999853 1 4
Q ss_pred HHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHH-Hhhh-c
Q 021750 198 TKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELI-QGFF-Q 275 (308)
Q Consensus 198 ~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~-~ 275 (308)
.+.........|++++++|++.+...+..++..++...++|+++|+||+|+..... .+..+...+.+ .... .
T Consensus 73 ~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~~------~~~~~~~~~~~~~~~~~~ 146 (179)
T d1wb1a4 73 IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEE------IKRTEMIMKSILQSTHNL 146 (179)
T ss_dssp HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHH------HHHHHHHHHHHHHHSSSG
T ss_pred ccchhhhhhhccccccccccccccchhhhhhhhhhhhcCCcceeccccccccCHHH------HHHHHHHHHHHHHHhhcC
Confidence 44555556677889999999999888888888888888999999999999986432 11122222222 2211 1
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
...+++++||++|+|+++|+++|.+.+.+
T Consensus 147 ~~~~iv~iSA~~g~gi~eL~~~I~~~l~~ 175 (179)
T d1wb1a4 147 KNSSIIPISAKTGFGVDELKNLIITTLNN 175 (179)
T ss_dssp GGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence 24689999999999999999999998875
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=4e-23 Score=169.73 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=109.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||+++++++++.....+..+.+.........+ .+.+||++|... +..++..+
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~~~~~ 72 (173)
T d2a5ja1 3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES----------FRSITRSY 72 (173)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGG----------TSCCCHHH
T ss_pred eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccc----------hhhHHHHH
Confidence 36999999999999999999999876555555555554444444443 688999999643 22244555
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHH-HHH---HhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLE-YAS---WLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~-l~~---~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+..+ +++++|+|.+++.+..... +.. .....++|+++|+||+|+...+. ...+....+.+..+
T Consensus 73 ~~~~---d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~~~~~~~a~~~~------ 139 (173)
T d2a5ja1 73 YRGA---AGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRD----VKREEGEAFAREHG------ 139 (173)
T ss_dssp HTTC---SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----SCHHHHHHHHHHHT------
T ss_pred hhcc---CEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhh----hHHHHHHHHHHHcC------
Confidence 5554 4589999999876655431 111 11236789999999999876543 24555666665553
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
+++++|||++|.||+++|.+|.+.+.+.
T Consensus 140 ~~~~e~Sa~tg~~V~e~f~~i~~~i~~~ 167 (173)
T d2a5ja1 140 LIFMETSAKTACNVEEAFINTAKEIYRK 167 (173)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 7899999999999999999998866543
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=9.2e-24 Score=172.49 Aligned_cols=154 Identities=21% Similarity=0.223 Sum_probs=111.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||+++|+++++.....++.+... ...+.+++ .+.+|||+|...... +...++
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~----------~~~~~~ 73 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSI----------FPQTYS 73 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCC----------CCGGGT
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeeccccccccccc----------ccchhh
Confidence 5999999999999999999998776544445544432 23445555 578899999653221 222333
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
. .++++++|+|.+++.+.... ++.+.....+.|+++|+||+|+...+. +..+.++.+.+.++
T Consensus 74 ~---~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~----v~~~~~~~~a~~~~------ 140 (167)
T d1xtqa1 74 I---DINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----ISYEEGKALAESWN------ 140 (167)
T ss_dssp S---SCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCC----SCHHHHHHHHHHHT------
T ss_pred h---hhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccc----hhHHHHHHHHHHcC------
Confidence 3 35569999999987766553 222333346799999999999976543 45666777777664
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++|++|||++|.||+++|+.|.+.+.
T Consensus 141 ~~~~e~Sak~~~~v~~~f~~li~~~~ 166 (167)
T d1xtqa1 141 AAFLESSAKENQTAVDVFRRIILEAE 166 (167)
T ss_dssp CEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEecCCCCCHHHHHHHHHHHhc
Confidence 78999999999999999999887654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=5.2e-23 Score=168.01 Aligned_cols=156 Identities=17% Similarity=0.212 Sum_probs=109.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||+++++.+++.....++.+... ...+..++ .+.+||++|... +..++..|
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~----------~~~~~~~~ 71 (167)
T d1c1ya_ 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQ----------FTAMRDLY 71 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCS----------STTHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCccc----------cccccccc
Confidence 36899999999999999999999876544444443322 22333444 588999999653 33356677
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHH-----HHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLE-----YASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~-----l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+..+++ +++|+|.++..+..+.. +.+.....+.|+++|+||+|+..... +..+....+.+...
T Consensus 72 ~~~~~~---~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~----~~~~~~~~~~~~~~----- 139 (167)
T d1c1ya_ 72 MKNGQG---FALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV----VGKEQGQNLARQWC----- 139 (167)
T ss_dssp HHHCSE---EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC----SCHHHHHHHHHHTT-----
T ss_pred ccccce---eEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccc----cchhHHHHHHHHhC-----
Confidence 776654 89999999876665531 11222235789999999999986543 23444445444332
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..++++|||++|+||+++|++|.+.+.
T Consensus 140 ~~~~~e~Sak~g~gv~e~F~~l~~~i~ 166 (167)
T d1c1ya_ 140 NCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp SCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCcCHHHHHHHHHHHhc
Confidence 378999999999999999999987653
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.89 E-value=1.1e-22 Score=167.12 Aligned_cols=155 Identities=17% Similarity=0.193 Sum_probs=108.9
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
.+...||+++|.+|||||||+|+|.+.++ ..+.+..+.+. ..+...+ .+.+||++|.. .++..++.
T Consensus 13 ~~~~~kI~vvG~~~vGKSsLi~~l~~~~~-~~~~~~~~~~~--~~i~~~~~~~~i~d~~g~~----------~~~~~~~~ 79 (176)
T d1fzqa_ 13 PDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNI--KSVQSQGFKLNVWDIGGQR----------KIRPYWRS 79 (176)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEE--EEEEETTEEEEEEECSSCG----------GGHHHHHH
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhcCCC-CcceeeeeeeE--EEeccCCeeEeEeeccccc----------cchhHHHH
Confidence 34557999999999999999999999865 44455555443 3444444 78999999953 45567777
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHH--HHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh-
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLE--YASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF- 274 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~- 274 (308)
++..++ ++++|+|.++..+..+.. +.... ...++|+++|+||+|+.+... ...+.+.+....
T Consensus 80 ~~~~~~---~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~---------~~~~~~~~~~~~~ 147 (176)
T d1fzqa_ 80 YFENTD---ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP---------ASEIAEGLNLHTI 147 (176)
T ss_dssp HHTTCS---EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC---------HHHHHHHTTGGGC
T ss_pred Hhhccc---eeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccccc---------HHHHHHHHHHHHH
Confidence 776554 489999999876655431 11222 235789999999999986432 233333332211
Q ss_pred -cCCCCEEEeecCCCCCHHHHHHHHHHH
Q 021750 275 -QTAPPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 275 -~~~~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
...+++++|||++|+|++|+|+||.+.
T Consensus 148 ~~~~~~~~~~SA~tg~gv~e~~~~l~~~ 175 (176)
T d1fzqa_ 148 RDRVWQIQSCSALTGEGVQDGMNWVCKN 175 (176)
T ss_dssp CSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred HhcCCEEEEEeCCCCCCHHHHHHHHHhc
Confidence 234679999999999999999999864
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=5.8e-23 Score=169.10 Aligned_cols=157 Identities=22% Similarity=0.274 Sum_probs=108.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||+++++++++.....+..+.+.....+..++ .+.+||++|..+ +...+..+
T Consensus 4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~----------~~~~~~~~ 73 (175)
T d2f9la1 4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER----------YRRITSAY 73 (175)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGG----------TTCCCHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHH----------HHHHHHHH
Confidence 46999999999999999999999876555566666666566666665 688999999532 22234455
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHH-HHHH---hccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLE-YASW---LGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~-l~~~---~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+..+ +++++|+|.+++.+..... +... ....+.|+++|+||+|+.+... ...+....+.+.. .
T Consensus 74 ~~~~---~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~----~~~~~~~~~~~~~------~ 140 (175)
T d2f9la1 74 YRGA---VGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA----VPTDEARAFAEKN------N 140 (175)
T ss_dssp HTTC---SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----SCHHHHHHHHHHT------T
T ss_pred hhcc---CeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeeccccccc----chHHHHHHhhccc------C
Confidence 5444 4589999999875554321 1111 1235789999999999986543 1223333333322 3
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.++++|||++|+|++++|+++.+.+.+
T Consensus 141 ~~~~e~Sa~~g~~i~e~f~~l~~~i~~ 167 (175)
T d2f9la1 141 LSFIETSALDSTNVEEAFKNILTEIYR 167 (175)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 789999999999999999998876543
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=4.7e-23 Score=168.07 Aligned_cols=156 Identities=21% Similarity=0.271 Sum_probs=110.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||+++|+++++.....++.+.+.....+..++ ++.+|||||... +..++..+
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~ 71 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER----------FRTITTAY 71 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGG----------TSCCCHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchh----------hHHHHHHH
Confidence 46999999999999999999999876555566666666666666655 577899999532 22345556
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHH----HHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEY----ASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l----~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
+..+ +++++|+|.+++.+..+.+. .........|+++++||.|+..... ..+..+++.+..+
T Consensus 72 ~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~-----~~~~~~~~~~~~~------ 137 (166)
T d1g16a_ 72 YRGA---MGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVV-----TADQGEALAKELG------ 137 (166)
T ss_dssp HTTE---EEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCS-----CHHHHHHHHHHHT------
T ss_pred HhcC---CEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhh-----hHHHHHHHHHhcC------
Confidence 5544 45899999998765544321 1112235788999999999876543 5566666666553
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.++++|||++|+|++++|++|.+.+.+
T Consensus 138 ~~~~~~Sa~~~~~v~e~f~~l~~~i~~ 164 (166)
T d1g16a_ 138 IPFIESSAKNDDNVNEIFFTLAKLIQE 164 (166)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCCHHHHHHHHHHHHHh
Confidence 799999999999999999999988765
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=4.9e-23 Score=172.47 Aligned_cols=157 Identities=20% Similarity=0.269 Sum_probs=113.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+|+|.+|||||||+++|+++.+.....++.+.+.....+.+++ .+.+|||||..+ +..++..|
T Consensus 6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~----------~~~~~~~~ 75 (194)
T d2bcgy1 6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER----------FRTITSSY 75 (194)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTT----------TTCCCGGG
T ss_pred EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchh----------hHHHHHHH
Confidence 47999999999999999999999876666667777776666666655 688899999542 22244455
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHH-HHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLE-YASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~-l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
++.+ +++++|+|.++..+..... +...+ .....|+++|+||+|+.+... +..+....+.+.. .
T Consensus 76 ~~~a---~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----~~~~~~~~~~~~~------~ 142 (194)
T d2bcgy1 76 YRGS---HGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----VEYDVAKEFADAN------K 142 (194)
T ss_dssp GTTC---SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----SCHHHHHHHHHHT------T
T ss_pred hccC---CEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccc----hhHHHHhhhhhcc------C
Confidence 5544 4589999999776555432 11112 246789999999999987543 2344444444333 3
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.+++++||++|.||+++|++|.+.+..
T Consensus 143 ~~~~e~SAk~g~gi~e~f~~l~~~i~~ 169 (194)
T d2bcgy1 143 MPFLETSALDSTNVEDAFLTMARQIKE 169 (194)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cceEEEecCcCccHHHHHHHHHHHHHH
Confidence 789999999999999999999887654
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.3e-22 Score=166.79 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=107.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
..++||+++|.+|||||||+++|+++++.....++.+.+........++ .+.+||++|..+ ......
T Consensus 4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~~~ 73 (174)
T d1wmsa_ 4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER----------FRSLRT 73 (174)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGG----------GHHHHG
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcce----------ehhhhh
Confidence 3457999999999999999999999877666666666666555555555 567999999532 222333
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ 271 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 271 (308)
.+ ...++++++++|.++..+.... ++..+.. ..+.|+++|+||+|+.+.. +..++++++.+...
T Consensus 74 ~~---~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~-----v~~~~~~~~~~~~~ 145 (174)
T d1wmsa_ 74 PF---YRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-----VSTEEAQAWCRDNG 145 (174)
T ss_dssp GG---GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-----SCHHHHHHHHHHTT
T ss_pred hh---hhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhcc-----CcHHHHHHHHHHcC
Confidence 32 3344569999999876554432 1122211 2468999999999986532 35556666655432
Q ss_pred hhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 272 GFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 272 ~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+|++|||++|+||+++|++|.+.+
T Consensus 146 -----~~~~~e~Sak~~~gI~e~f~~l~~~i 171 (174)
T d1wmsa_ 146 -----DYPYFETSAKDATNVAAAFEEAVRRV 171 (174)
T ss_dssp -----CCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----CCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence 37899999999999999999998765
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.88 E-value=1.8e-22 Score=167.34 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=107.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
++||+++|.+|||||||+++|+++++.....++.+.+.....+...+ .+.+|||+|...... .+..+
T Consensus 2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~----------~~~~~ 71 (184)
T d1vg8a_ 2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS----------LGVAF 71 (184)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC----------SCCGG
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccc----------ccccc
Confidence 36999999999999999999999877665666666666555555544 578899999643221 11222
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF 273 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (308)
...++++++++|.++..+.... ++..... ..++|+++|+||+|+.+.. +..+..+++....
T Consensus 72 ---~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~--- 140 (184)
T d1vg8a_ 72 ---YRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-----VATKRAQAWCYSK--- 140 (184)
T ss_dssp ---GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-----SCHHHHHHHHHHT---
T ss_pred ---ccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccc-----hhHHHHHHHHHHh---
Confidence 2334669999999875544332 1111111 2468999999999987543 2444444443332
Q ss_pred hcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 274 FQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 274 ~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
...++++|||++|.||+++|++|.+.+.+
T Consensus 141 --~~~~~~e~Sak~~~gI~e~f~~l~~~i~~ 169 (184)
T d1vg8a_ 141 --NNIPYFETSAKEAINVEQAFQTIARNALK 169 (184)
T ss_dssp --TSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred --cCCeEEEEcCCCCcCHHHHHHHHHHHHHh
Confidence 24899999999999999999998776544
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=6e-24 Score=174.40 Aligned_cols=151 Identities=17% Similarity=0.239 Sum_probs=102.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++|+++++.....++.+.......+..++ .+.+|||+|... +..++..|+
T Consensus 4 ~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~----------~~~~~~~~~ 73 (170)
T d1i2ma_ 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK----------FGGLRDGYY 73 (170)
T ss_dssp EEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHH----------HSSCGGGGT
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccc----------cceecchhc
Confidence 5999999999999999999999876555555556555545555554 589999999532 222334444
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
..+ +++++|+|.++..+.... ..|+. ..+.|+++|+||+|+..... . +....+.+ ...
T Consensus 74 ~~~---~~~ilv~d~~~~~Sf~~~--~~~~~~~~~~~~~~piilvgnK~Dl~~~~~-----~-~~~~~~~~------~~~ 136 (170)
T d1i2ma_ 74 IQA---QCAIIMFDVTSRVTYKNV--PNWHRDLVRVCENIPIVLCGNKVDIKDRKV-----K-AKSIVFHR------KKN 136 (170)
T ss_dssp TTC---CEEEEEEETTSGGGGTTH--HHHHHHHHHHHCSCCEEEEEECCCCSCSCC-----T-TTSHHHHS------SCS
T ss_pred ccc---cchhhccccccccccchh--HHHHHHHhhccCCCceeeecchhhhhhhhh-----h-hHHHHHHH------HcC
Confidence 444 459999999987766543 22222 35899999999999976542 1 11222221 124
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++++++||++|+||+++|++|.+.+-
T Consensus 137 ~~~~e~Sak~~~~v~e~f~~l~~~l~ 162 (170)
T d1i2ma_ 137 LQYYDISAKSNYNFEKPFLWLARKLI 162 (170)
T ss_dssp SEEEEEBTTTTBTTTHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHc
Confidence 78999999999999999999987653
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=6.1e-23 Score=165.97 Aligned_cols=154 Identities=21% Similarity=0.314 Sum_probs=109.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
||+++|.+|||||||+|+|++.+. ..++..++++... ..+...+ .+.++||||+............+ ..++.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~----~~~~~ 76 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNEDR-AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGI----ERTLQ 76 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHTB-CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCH----HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc-eeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHH----HHHHH
Confidence 899999999999999999998753 5677777776543 2334444 78899999985533221101111 22223
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEe
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMT 283 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 283 (308)
....+|++++|+|++++....+..+..++ ...++++++||+|+.+... .+++.+.+. ...+++++
T Consensus 77 ~~~~ad~ii~v~d~~~~~~~~~~~~~~~~--~~~~~i~~~~k~d~~~~~~---------~~~~~~~~~----~~~~~~~v 141 (160)
T d1xzpa2 77 EIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKIN---------EEEIKNKLG----TDRHMVKI 141 (160)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCC---------HHHHHHHHT----CSTTEEEE
T ss_pred HHHhCCEEEEEEeCCCCcchhhhhhhhhc--ccccceeeeeeccccchhh---------hHHHHHHhC----CCCcEEEE
Confidence 33345679999999998888776655554 4688999999999986432 334444443 34789999
Q ss_pred ecCCCCCHHHHHHHHHH
Q 021750 284 SSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 284 SA~~g~gi~el~~~i~~ 300 (308)
||++|+|+++|+++|.+
T Consensus 142 SA~~g~gi~~L~~~I~k 158 (160)
T d1xzpa2 142 SALKGEGLEKLEESIYR 158 (160)
T ss_dssp EGGGTCCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 99999999999999865
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=1.9e-23 Score=171.66 Aligned_cols=160 Identities=16% Similarity=0.202 Sum_probs=90.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
.++||+++|.+|||||||+++|+++++.....++.+.+.....+..++ .+.+|||||.. .+..++..
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e----------~~~~~~~~ 74 (173)
T d2fu5c1 5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTITTA 74 (173)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------CCT
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCch----------hhHHHHHH
Confidence 357999999999999999999998765444444555555556666665 57789999953 23334444
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHH-HHHH---hccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLE-YASW---LGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~-l~~~---~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
++.. ++++++|+|.+++.+..... +... ....+.|+++|+||+|+..... ...+....+....
T Consensus 75 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~----~~~~~~~~~~~~~------ 141 (173)
T d2fu5c1 75 YYRG---AMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQ----VSKERGEKLALDY------ 141 (173)
T ss_dssp TTTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----SCHHHHHHHHHHH------
T ss_pred hccC---CCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcc----cHHHHHHHHHHhc------
Confidence 4433 45699999999876554431 1112 2246799999999999887543 2334444444443
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
.+++++|||++|+||+++|++|.+.+....
T Consensus 142 ~~~~~e~Sa~~g~gv~e~f~~l~~~i~~k~ 171 (173)
T d2fu5c1 142 GIKFMETSAKANINVENAFFTLARDIKAKM 171 (173)
T ss_dssp TCEEEECCC---CCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 378999999999999999999998886654
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=7.4e-23 Score=170.08 Aligned_cols=162 Identities=18% Similarity=0.135 Sum_probs=110.2
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHH
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFT 198 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 198 (308)
....+||+++|.+|||||||+++|+.+.+.....++.+... ...+..++ .+.+|||+|... +..++
T Consensus 6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~~~l~i~D~~g~e~----------~~~~~ 74 (185)
T d2atxa1 6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQED----------YDRLR 74 (185)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSS----------STTTG
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeee-eEEEeeCCceEEeecccccccch----------hhhhh
Confidence 34467999999999999999999999876544444443322 23333333 578999999643 22234
Q ss_pred HHHHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc--cCCCCEEEEeecCCCCCccc--------CCCCCchhhHHHH
Q 021750 199 KDYFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG--QNQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDF 266 (308)
Q Consensus 199 ~~~~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~--~~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~ 266 (308)
..|+.. ++++++|+|.++..++.+. .+...+. ..+.|+++|+||+|+.+... ....+..++.+++
T Consensus 75 ~~~~~~---a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~ 151 (185)
T d2atxa1 75 PLSYPM---TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKL 151 (185)
T ss_dssp GGGCTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHH
T ss_pred hhcccc---cceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHH
Confidence 444444 3559999999987665442 1111211 35789999999999976321 1122455666666
Q ss_pred HHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 267 QELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 267 ~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+.++ .++|++|||++|.||+++|+.+.+.+
T Consensus 152 a~~~~-----~~~~~E~SAk~~~gv~e~F~~li~~i 182 (185)
T d2atxa1 152 AKEIG-----ACCYVECSALTQKGLKTVFDEAIIAI 182 (185)
T ss_dssp HHHHT-----CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcC-----CCEEEEecCCCCcCHHHHHHHHHHHH
Confidence 66664 37899999999999999999987654
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=3.2e-22 Score=163.77 Aligned_cols=156 Identities=21% Similarity=0.220 Sum_probs=107.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCccee-ccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLAL-TSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
.+||+++|.+|||||||+++++++++... .....+.+.....+..++ .+.+|||||.. .+..++..
T Consensus 6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e----------~~~~~~~~ 75 (170)
T d2g6ba1 6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE----------RFRSVTHA 75 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC------------------C
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCch----------hhHHHHHH
Confidence 46999999999999999999999765332 233334455444555555 57899999953 33345555
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHH--HHH--HhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLE--YAS--WLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~--l~~--~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
++..+ +++++|+|.++..+..... +.. .......|+++|+||+|+.+... +..+.+..+.+..+
T Consensus 76 ~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~----v~~~~~~~~~~~~~----- 143 (170)
T d2g6ba1 76 YYRDA---HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERV----VKREDGEKLAKEYG----- 143 (170)
T ss_dssp CGGGC---SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----SCHHHHHHHHHHHT-----
T ss_pred hhcCC---ceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhccc----ccHHHHHHHHHHcC-----
Confidence 55554 4589999998766544431 111 11235789999999999987644 35566666666553
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
+++++|||++|+||+++|++|.+.+.
T Consensus 144 -~~~~e~Sak~g~gi~e~f~~l~~~i~ 169 (170)
T d2g6ba1 144 -LPFMETSAKTGLNVDLAFTAIAKELK 169 (170)
T ss_dssp -CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -CEEEEEeCCCCcCHHHHHHHHHHHcC
Confidence 79999999999999999999988764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.9e-22 Score=165.65 Aligned_cols=160 Identities=15% Similarity=0.172 Sum_probs=107.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcce-eccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLA-LTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
.+||+++|.+|||||||+++|++..+.. ...++.+.......+.+++ .+.+||++|. .+++ ++ +...
T Consensus 3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~----~g~e---~~--~~~~ 73 (172)
T d2g3ya1 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN----KGEN---EW--LHDH 73 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTT----THHH---HH--HHHC
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccc----cccc---cc--cccc
Confidence 4699999999999999999999865321 1112223333344455554 4788998763 2232 21 2223
Q ss_pred HHHhcCCccEEEEEEeCCCCCChhHHH-HHHHhc----cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhc
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPIDLE-YASWLG----QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQ 275 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~~~~-l~~~~~----~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (308)
|+ ..++++++|+|.++..+..+.. +...+. ..++|+++|+||+|+.+.++ +..++.+.+.+.++
T Consensus 74 ~~---~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~----v~~~~~~~~a~~~~---- 142 (172)
T d2g3ya1 74 CM---QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCRE----VSVSEGRACAVVFD---- 142 (172)
T ss_dssp CC---CCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC----SCHHHHHHHHHHHT----
T ss_pred cc---cccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEecccccccccc----ccHHHHHHHHHHcC----
Confidence 33 3456699999999876655431 111121 25799999999999986543 35566666666654
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
+++++|||++|+||+++|+.|.+.+...+
T Consensus 143 --~~~~e~Sak~g~~i~~~f~~l~~~i~~rr 171 (172)
T d2g3ya1 143 --CKFIETSAAVQHNVKELFEGIVRQVRLRR 171 (172)
T ss_dssp --CEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred --CeEEEEeCCCCcCHHHHHHHHHHHHHHcc
Confidence 78999999999999999999999887654
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=1.7e-22 Score=164.33 Aligned_cols=152 Identities=25% Similarity=0.285 Sum_probs=108.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
.+||+++|.+|||||||+++|+++++.....++.+.........+.. .+.+||++|... .....++.|
T Consensus 2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 72 (165)
T d1z06a1 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER---------FRKSMVQHY 72 (165)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH---------HHTTTHHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchh---------hccccceee
Confidence 46999999999999999999999876555666666655555555544 688999998532 111134455
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-----HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcC
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-----EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQT 276 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-----~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (308)
+..+ +++++|+|.+++.+.... ++.+.....+.|++||+||+|+.+..+ +..++++.+.+.++
T Consensus 73 ~~~~---d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~----v~~~~~~~~~~~~~----- 140 (165)
T d1z06a1 73 YRNV---HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----VPTDLAQKFADTHS----- 140 (165)
T ss_dssp HTTC---CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC----SCHHHHHHHHHHTT-----
T ss_pred ecCC---CceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccc----hhHHHHHHHHHHCC-----
Confidence 5544 459999999987665543 112222336789999999999987653 45666777666553
Q ss_pred CCCEEEeecCC---CCCHHHHHHHH
Q 021750 277 APPWIMTSSVT---NQGRDEILLHM 298 (308)
Q Consensus 277 ~~~~~~vSA~~---g~gi~el~~~i 298 (308)
+++++|||++ ++||+++|++|
T Consensus 141 -~~~~e~SAkt~~~~~~V~e~F~~l 164 (165)
T d1z06a1 141 -MPLFETSAKNPNDNDHVEAIFMTL 164 (165)
T ss_dssp -CCEEECCSSSGGGGSCHHHHHHHH
T ss_pred -CEEEEEecccCCcCcCHHHHHHHh
Confidence 7899999997 55999999886
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=6e-23 Score=170.29 Aligned_cols=158 Identities=25% Similarity=0.230 Sum_probs=99.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeC--CCEEEecCCCcccCC-CchhhhhchHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIN--DSWYLVDLPGYGYAA-APRELRTDWDKFTKD 200 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~--~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~ 200 (308)
++|+|+|.||||||||+|+|++.+. . +...+++|.. .....+. ..+.+|||||+.+.. .... .+..++..
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~~~-~-~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~---~~~~~l~~ 76 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSAKP-K-IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVG---LGHQFLRH 76 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECC-E-ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTT---THHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCC-c-eecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHH---HHHHHHHH
Confidence 5899999999999999999998753 3 3344444432 3333333 369999999985422 2222 22223333
Q ss_pred HHHhcCCccEEEEEEeCCCCCChh--HHH--HH--HHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH
Q 021750 201 YFLNRSTLVSVFLLIDASIPAKPI--DLE--YA--SWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ 271 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~~~~~--~~~--l~--~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 271 (308)
...++.++++++........ +.. .. .... ..++|+++|+||+|+.+. .+..+.+.+
T Consensus 77 ----~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~--------~~~~~~~~~--- 141 (185)
T d1lnza2 77 ----IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--------AENLEAFKE--- 141 (185)
T ss_dssp ----HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--------HHHHHHHHH---
T ss_pred ----HHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH--------HHHHHHHHH---
Confidence 22234477777765443222 111 11 1111 247899999999999853 223333333
Q ss_pred hhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 272 GFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 272 ~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.+....+++++||++|+|+++|+++|.+.+.+
T Consensus 142 -~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L~~ 173 (185)
T d1lnza2 142 -KLTDDYPVFPISAVTREGLRELLFEVANQLEN 173 (185)
T ss_dssp -HCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred -HhccCCcEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 33456889999999999999999999988753
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=4.7e-22 Score=164.00 Aligned_cols=187 Identities=37% Similarity=0.562 Sum_probs=116.1
Q ss_pred HhhcccCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchh
Q 021750 110 FVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRE 189 (308)
Q Consensus 110 f~~s~~~~~~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~ 189 (308)
|..|+....+.|.+..++|+|+|.||||||||+|+|++.+........++++..............+++.+.........
T Consensus 1 ~~~~~~~~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (188)
T d1puia_ 1 FVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEE 80 (188)
T ss_dssp CEEEESSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------C
T ss_pred CeeCCCChhHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhh
Confidence 34455566678888999999999999999999999999764333333333333333333333333333333222111111
Q ss_pred hhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHH
Q 021750 190 LRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQEL 269 (308)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 269 (308)
...........+...+...+.++.+.|.....................++++++||+|+.+... .....+.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~-----~~~~~~~~~~~ 155 (188)
T d1puia_ 81 MKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGA-----RKAQLNMVREA 155 (188)
T ss_dssp CHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHH-----HHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhheeEEEEeecccccchhHHHHHHHHhhhccccccchhhhhhccCHHH-----HHHHHHHHHHH
Confidence 1112222333344556666678888888887777777777777778899999999999987543 33445555555
Q ss_pred HHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 270 IQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 270 ~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+... ....+++++||++|+|+++|++.|.+.+
T Consensus 156 l~~~-~~~~~~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 156 VLAF-NGDVQVETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp HGGG-CSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHhh-CCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence 5443 3346899999999999999999988765
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.5e-22 Score=166.93 Aligned_cols=155 Identities=21% Similarity=0.215 Sum_probs=110.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+++|.++++.....+..+.......+.+++ .+.+|||||..+ +..++..++
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~ 77 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER----------FRTLTPSYY 77 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG----------GCCSHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchh----------hHHHHHHHH
Confidence 5899999999999999999999876555555666655555566655 589999999642 222455555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH-HHHHHh----ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL-EYASWL----GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTA 277 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~----~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
...+ ++++|+|.++..+.... .+...+ .....|+++++||+|..... +..+....+.+..+
T Consensus 78 ~~~~---~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~-----v~~~~~~~~~~~~~------ 143 (177)
T d1x3sa1 78 RGAQ---GVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE-----VDRNEGLKFARKHS------ 143 (177)
T ss_dssp TTCC---EEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-----SCHHHHHHHHHHTT------
T ss_pred hcCC---EEEEEEECCCccccccchhhhhhhcccccccceeeEEEeecccccccc-----ccHHHHHHHHHHCC------
Confidence 5444 48999999876554332 112111 13568899999999976543 34555555555443
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
++++++||++|+|++++|+++.+.+-+
T Consensus 144 ~~~~e~Sa~tg~gv~e~f~~l~~~l~~ 170 (177)
T d1x3sa1 144 MLFIEASAKTCDGVQCAFEELVEKIIQ 170 (177)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHcc
Confidence 789999999999999999999876643
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=9.1e-23 Score=168.12 Aligned_cols=158 Identities=17% Similarity=0.229 Sum_probs=106.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||+++++++.+.....++.+. ........++ .+.+||++|.. .+..++..|+
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~g~~----------~~~~~~~~~~ 71 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYVADIEVDGKQVELALWDTAGLE----------DYDRLRPLSY 71 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEETTEEEEEEEEEECCSG----------GGTTTGGGGC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee-eccccccccccceeeeccccCccc----------hhcccchhhc
Confidence 48999999999999999999998764433333322 2223334444 58899999964 2333455555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHHHHH
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQELI 270 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~ 270 (308)
..+ +++++|+|.+++.++.+.. +...+. ..+.|++||+||+|+.+... ....+..++.+.+.+.+
T Consensus 72 ~~~---~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~ 148 (177)
T d1kmqa_ 72 PDT---DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI 148 (177)
T ss_dssp TTC---SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred ccc---hhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHc
Confidence 554 4589999999876654421 112221 25799999999999976432 11123445555555554
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
+ ..+|++|||++|.||+++|+.+.+.+
T Consensus 149 ~-----~~~~~E~SAkt~~gi~e~F~~i~~~~ 175 (177)
T d1kmqa_ 149 G-----AFGYMECSAKTKDGVREVFEMATRAA 175 (177)
T ss_dssp T-----CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred C-----CcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 3 36899999999999999999998765
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.88 E-value=1e-22 Score=168.53 Aligned_cols=160 Identities=14% Similarity=0.145 Sum_probs=107.2
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 121 PSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 121 ~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
......||+++|.+|||||||+++|.+.++ ....++.+... ......+ .+.+||+||... ++..+.
T Consensus 13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~-~~~~~t~~~~~--~~~~~~~~~~~i~D~~g~~~----------~~~~~~ 79 (182)
T d1moza_ 13 GSNKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYKNLKLNVWDLGGQTS----------IRPYWR 79 (182)
T ss_dssp TCSSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEETTEEEEEEEEC--------------CCTTGG
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCC-CccccccceEE--EEEeeCCEEEEEEecccccc----------cchhHH
Confidence 345578999999999999999999998754 33444444433 3334444 789999999642 112333
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh-
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF- 273 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~- 273 (308)
.++. .++++++|+|.++..+..+. .+...+. ..+.|++||+||+|+.+... .+++.+.+...
T Consensus 80 ~~~~---~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~---------~~~i~~~~~~~~ 147 (182)
T d1moza_ 80 CYYA---DTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS---------ASEVSKELNLVE 147 (182)
T ss_dssp GTTT---TEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC---------HHHHHHHTTTTT
T ss_pred hhhc---cceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccC---------HHHHHHHHHHHH
Confidence 4433 44569999999988776543 2222222 25789999999999975432 23333333211
Q ss_pred -hcCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 274 -FQTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 274 -~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
....+++++|||++|+|++++|++|.+.+.+.
T Consensus 148 ~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~~~ 180 (182)
T d1moza_ 148 LKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180 (182)
T ss_dssp CCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred HhhCCCEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 12246799999999999999999999998774
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.88 E-value=2.3e-22 Score=163.58 Aligned_cols=154 Identities=17% Similarity=0.132 Sum_probs=102.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
.+||+++|.+|||||||+++|.+... ..+.++.+. ....+..++ .+.+|||||.. .++..+..++.
T Consensus 2 ~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~--~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~~~~ 68 (165)
T d1ksha_ 2 ELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGF--NIKTLEHRGFKLNIWDVGGQK----------SLRSYWRNYFE 68 (165)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSE--EEEEEEETTEEEEEEEECCSH----------HHHTTGGGGCT
T ss_pred cEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEee--eeeeccccccceeeeecCcch----------hhhhHHHhhhh
Confidence 35899999999999999999998753 333333332 334455555 79999999943 22223333333
Q ss_pred hcCCccEEEEEEeCCCCCChhHH--HHHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh--hhcC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDL--EYASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG--FFQT 276 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~--~l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 276 (308)
..+++++++|.++.....+. .+..++ ...++|+++|+||+|+.+... ..+....+.. ....
T Consensus 69 ---~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~ 136 (165)
T d1ksha_ 69 ---STDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS---------CNAIQEALELDSIRSH 136 (165)
T ss_dssp ---TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---------HHHHHHHTTGGGCCSS
T ss_pred ---hhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccC---------HHHHHHHHHhhhhhcC
Confidence 34569999999876555442 222222 236799999999999976432 2222222221 1122
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
.+++++|||++|+|++++|+||.+.+.
T Consensus 137 ~~~~~~~Sa~~g~gv~e~~~~l~~~i~ 163 (165)
T d1ksha_ 137 HWRIQGCSAVTGEDLLPGIDWLLDDIS 163 (165)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999988765
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=4.3e-22 Score=162.90 Aligned_cols=156 Identities=20% Similarity=0.239 Sum_probs=114.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||+++++++++.....++.+.......+..++ .+.+|||+|.. .+..+...++
T Consensus 4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~----------~~~~~~~~~~ 73 (170)
T d1ek0a_ 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE----------RFASLAPMYY 73 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCch----------hHHHHHHHHH
Confidence 4899999999999999999999887666666777665555666655 68999999954 2333555666
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHH----HHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYA----SWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAP 278 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~----~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (308)
...+ ++++|+|.+++.+..+.... ........|+++|+||+|+.+... ...+..++.+.+.+..+ +
T Consensus 74 ~~~~---~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~-~~~v~~~~~~~~~~~~~------~ 143 (170)
T d1ek0a_ 74 RNAQ---AALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGG-ERKVAREEGEKLAEEKG------L 143 (170)
T ss_dssp TTCS---EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSC-CCCSCHHHHHHHHHHHT------C
T ss_pred hccc---eEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccc-hhhhhHHHHHHHHHHcC------C
Confidence 5554 48999999987666553211 111235789999999999875432 11245566677766654 7
Q ss_pred CEEEeecCCCCCHHHHHHHHHHH
Q 021750 279 PWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 279 ~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
+|++|||++|.||+++|+.|.+.
T Consensus 144 ~~~e~Sak~g~gV~e~F~~i~~~ 166 (170)
T d1ek0a_ 144 LFFETSAKTGENVNDVFLGIGEK 166 (170)
T ss_dssp EEEECCTTTCTTHHHHHHHHHTT
T ss_pred EEEEecCCCCcCHHHHHHHHHHH
Confidence 89999999999999999998764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.87 E-value=3.9e-22 Score=163.68 Aligned_cols=154 Identities=14% Similarity=0.145 Sum_probs=103.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
...||+++|.+|||||||+++|++.++ ....++.+.. ........ .+.+||+||.. .++..+..++
T Consensus 11 k~~kIvlvG~~~vGKTSli~rl~~~~~-~~~~~t~~~~--~~~~~~~~~~~~i~D~~g~~----------~~~~~~~~~~ 77 (173)
T d1e0sa_ 11 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFN--VETVTYKNVKFNVWDVGGQD----------KIRPLWRHYY 77 (173)
T ss_dssp CCEEEEEEEETTSSHHHHHHHTTCCCC-EEEEEETTEE--EEEEEETTEEEEEEEESCCG----------GGHHHHGGGT
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCC-CCccceeeee--EEEeeccceeeEEecCCCcc----------hhhhHHHhhh
Confidence 346999999999999999999998764 3333333333 22333333 78899999954 3334555554
Q ss_pred HhcCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHH--hhhc
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQ--GFFQ 275 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 275 (308)
.. ++++++|+|.++..+..+. .+...+. ....|+++|+||+|+.+... ..++.+.+. ....
T Consensus 78 ~~---~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~---------~~~i~~~~~~~~~~~ 145 (173)
T d1e0sa_ 78 TG---TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---------PHEIQEKLGLTRIRD 145 (173)
T ss_dssp TT---CCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC---------HHHHHHHTTGGGCCS
T ss_pred cc---cceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccccc---------HHHHHHHHHHHHHHh
Confidence 44 4559999999876655443 2222222 25799999999999976432 223333332 1222
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+++++|||++|+||+|+|+||.+.+
T Consensus 146 ~~~~~~e~SA~tg~gv~e~~~~l~~~~ 172 (173)
T d1e0sa_ 146 RNWYVQPSCATSGDGLYEGLTWLTSNY 172 (173)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred CCCEEEEeeCCCCcCHHHHHHHHHHhc
Confidence 346789999999999999999998754
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=6.9e-23 Score=165.80 Aligned_cols=153 Identities=24% Similarity=0.319 Sum_probs=104.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+||+++|.+|||||||+|+|++.+. ..+...++++... ..+...+ .+.++|+||+.+.....+ . . ......
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~-~-~---~~~~~~ 75 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREA-AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVE-R-I---GIERAW 75 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC-SCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHH-H-H---HHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-eEeecccccccceEeeeeeccCceeeeccccccccccccch-h-H---HHHHHH
Confidence 4899999999999999999998754 5566777776543 3344444 789999999876433221 0 1 111222
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHH-Hhc--cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCC
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYAS-WLG--QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPP 279 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~-~~~--~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (308)
.....++++++++|.............. ++. ..++|+++|+||+|+.+... ... + ....+
T Consensus 76 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~-----~~~----------~--~~~~~ 138 (161)
T d2gj8a1 76 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL-----GMS----------E--VNGHA 138 (161)
T ss_dssp HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----EEE----------E--ETTEE
T ss_pred HHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHH-----HHH----------H--hCCCc
Confidence 2233456699999998876654443222 222 24799999999999876432 110 0 12368
Q ss_pred EEEeecCCCCCHHHHHHHHHHH
Q 021750 280 WIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 280 ~~~vSA~~g~gi~el~~~i~~~ 301 (308)
++++||++|+|+++|+++|.+.
T Consensus 139 ~~~iSAk~~~gi~~L~~~l~~~ 160 (161)
T d2gj8a1 139 LIRLSARTGEGVDVLRNHLKQS 160 (161)
T ss_dssp EEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 9999999999999999999875
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.86 E-value=2.4e-21 Score=157.52 Aligned_cols=152 Identities=18% Similarity=0.143 Sum_probs=104.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHh
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 204 (308)
.||+++|.+|||||||+++|.++++.....++.+. ....+..++ .+.+||+||.. .+...+..++..
T Consensus 3 ~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~--~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~~~ 70 (164)
T d1zd9a1 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGF--NMRKITKGNVTIKLWDIGGQP----------RFRSMWERYCRG 70 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSE--EEEEEEETTEEEEEEEECCSH----------HHHTTHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCccccccee--eeeeeeeeeEEEEEeeccccc----------cccccccccccc
Confidence 58999999999999999999998654433343333 334455555 78999999943 333455566655
Q ss_pred cCCccEEEEEEeCCCCCChhHH--HHHHHhc---cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh--cCC
Q 021750 205 RSTLVSVFLLIDASIPAKPIDL--EYASWLG---QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF--QTA 277 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~~~~--~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 277 (308)
.+ ++++|+|.++..+.... .+...+. ..++|+++|+||+|+.+... .+++.+.++... ...
T Consensus 71 ~~---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~---------~~~i~~~~~~~~~~~~~ 138 (164)
T d1zd9a1 71 VS---AIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD---------EKELIEKMNLSAIQDRE 138 (164)
T ss_dssp CS---EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC---------HHHHHHHTTGGGCCSSC
T ss_pred cc---hhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhh---------HHHHHHHHHHHHHHhCC
Confidence 44 48999999876654432 2222222 36899999999999875432 233333433221 234
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
.+++++||++|+|++++|+||.+.
T Consensus 139 ~~~~e~Sa~~g~gv~e~~~~l~~~ 162 (164)
T d1zd9a1 139 ICCYSISCKEKDNIDITLQWLIQH 162 (164)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHT
T ss_pred CEEEEEeCcCCcCHHHHHHHHHHc
Confidence 688999999999999999999874
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=6.1e-22 Score=164.07 Aligned_cols=159 Identities=18% Similarity=0.122 Sum_probs=104.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
..||+++|.+|||||||+++|+++++.....++.+... ...+..++ .+.+||++|... +..+...|
T Consensus 5 ~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~-~~~~~~~~~~~~~~~~d~~g~~~----------~~~~~~~~ 73 (183)
T d1mh1a_ 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQED----------YDRLRPLS 73 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGG----------GTTTGGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeece-eeeeeccCcceEEEeeccccccc----------chhhhhhc
Confidence 46999999999999999999999876554444444332 23333444 578999998542 22233344
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHHHH
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQEL 269 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~ 269 (308)
+.. ++++++|+|.++..++.+.. +...+. ..+.|+++|+||+|+.+.+. ............+.+.
T Consensus 74 ~~~---~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 150 (183)
T d1mh1a_ 74 YPQ---TDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 150 (183)
T ss_dssp CTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred ccc---cceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHH
Confidence 444 45599999999876665432 122111 25789999999999875432 0001122233333333
Q ss_pred HHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 270 IQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 270 ~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
++ .++|++|||++|+||+++|+.|.+.+
T Consensus 151 ~~-----~~~~~E~SAk~~~~V~e~F~~l~~~i 178 (183)
T d1mh1a_ 151 IG-----AVKYLECSALTQRGLKTVFDEAIRAV 178 (183)
T ss_dssp TT-----CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cC-----CceEEEcCCCCCcCHHHHHHHHHHHH
Confidence 32 37899999999999999999998754
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.1e-21 Score=163.77 Aligned_cols=158 Identities=17% Similarity=0.166 Sum_probs=107.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||+++++++++.....++.+... ......++ .+.+||++|..+ +..+...++
T Consensus 4 iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~g~~~----------~~~~~~~~~ 72 (191)
T d2ngra_ 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED----------YDRLRPLSY 72 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGG----------GTTTGGGGC
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeec-ceeEeeCCceeeeeccccccchh----------hhhhhhhcc
Confidence 5899999999999999999999876544434333222 22333343 588999999642 333444555
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHHHHH
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQELI 270 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~ 270 (308)
.. ++++++|+|.++..++.+.. +...+. ..+.|+++|+||+|+.+... ....+..+..+.+.+.+
T Consensus 73 ~~---~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 149 (191)
T d2ngra_ 73 PQ---TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149 (191)
T ss_dssp TT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHT
T ss_pred cc---cceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHc
Confidence 44 45599999999887665541 112121 26799999999999875421 11224555566665554
Q ss_pred HhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
. ..+|++|||++|.||+++|+.+.+.+
T Consensus 150 ~-----~~~~~e~SAk~~~~V~e~f~~l~~~~ 176 (191)
T d2ngra_ 150 K-----AVKYVECSALTQKGLKNVFDEAILAA 176 (191)
T ss_dssp T-----CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred C-----CCeEEEEeCCCCcCHHHHHHHHHHHH
Confidence 3 37899999999999999999888654
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.85 E-value=2.5e-21 Score=166.09 Aligned_cols=169 Identities=20% Similarity=0.229 Sum_probs=109.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcc----eeccCCCCceEEE--------------EEEEeCC-CEEEecCCCcccCCC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKL----ALTSKTPGKTQCI--------------NHFRIND-SWYLVDLPGYGYAAA 186 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~----~~~~~~~~~t~~~--------------~~~~~~~-~~~liDtpG~~~~~~ 186 (308)
|.|+|+|.+|+|||||+|+|++.... ..++...+..... ..+..++ ++.++||||+....
T Consensus 6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~- 84 (227)
T d1g7sa4 6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT- 84 (227)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT-
T ss_pred CEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccc-
Confidence 45999999999999999999874210 0011111111000 0011222 69999999974311
Q ss_pred chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCC--------
Q 021750 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKR-------- 258 (308)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~-------- 258 (308)
.........+|++++|+|+..+...+..++..++...++|+|+|+||+|+..........
T Consensus 85 ------------~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~ 152 (227)
T d1g7sa4 85 ------------TLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSK 152 (227)
T ss_dssp ------------TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTT
T ss_pred ------------ccchhcccccceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCCCchhhhhhHHHHHhhhc
Confidence 111234456788999999999999999889999998999999999999998654321100
Q ss_pred -c----hhhHHHHHHHHHhh---------------hcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q 021750 259 -P----EENLNDFQELIQGF---------------FQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWLK 307 (308)
Q Consensus 259 -~----~~~~~~~~~~~~~~---------------~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~~ 307 (308)
. ......+.+..... +....+++++||++|.|+++|++.|.++.+++.+
T Consensus 153 ~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~ 221 (227)
T d1g7sa4 153 QDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLR 221 (227)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCS
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 0 00111111111111 1123579999999999999999999998877653
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.84 E-value=1.3e-20 Score=151.21 Aligned_cols=151 Identities=14% Similarity=0.147 Sum_probs=98.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHh
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 204 (308)
.||+++|++|||||||+++|+++++.......... ........ .+.++|+||.. .+......++..
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~g~~----------~~~~~~~~~~~~ 67 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN---VETVEYKNISFTVWDVGGQD----------KIRPLWRHYFQN 67 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC---EEEEECSSCEEEEEECCCCG----------GGHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE---EEEEeeeeEEEEEecCCCcc----------cchhhhhhhhcc
Confidence 38999999999999999999987653322222221 22223333 78899999964 233345555544
Q ss_pred cCCccEEEEEEeCCCCCChhHH--HHHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--hcCC
Q 021750 205 RSTLVSVFLLIDASIPAKPIDL--EYASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--FQTA 277 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~~~~--~l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 277 (308)
+ +++++++|..+....... .+.... .....|+++++||+|+.+... ..++....... ....
T Consensus 68 ~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~---------~~~i~~~~~~~~~~~~~ 135 (160)
T d1r8sa_ 68 T---QGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRHRN 135 (160)
T ss_dssp C---SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---------HHHHHHHTTGGGCSSCC
T ss_pred c---eeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeeccccccccc---------HHHHHHHHHHHHHhhCC
Confidence 4 448999999876555442 112222 236789999999999886432 12222222111 1234
Q ss_pred CCEEEeecCCCCCHHHHHHHHHHH
Q 021750 278 PPWIMTSSVTNQGRDEILLHMAQL 301 (308)
Q Consensus 278 ~~~~~vSA~~g~gi~el~~~i~~~ 301 (308)
+++++|||++|+|++++|++|.+.
T Consensus 136 ~~~~~~SAktg~gi~e~~~~l~~~ 159 (160)
T d1r8sa_ 136 WYIQATCATSGDGLYEGLDWLSNQ 159 (160)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHH
T ss_pred CEEEEeECCCCCCHHHHHHHHHhc
Confidence 789999999999999999999875
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=2.9e-20 Score=153.05 Aligned_cols=155 Identities=12% Similarity=0.072 Sum_probs=105.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
..||+++|.+|||||||+++++++++. ...++.+... ...+.+++ .+.+|||+|... .+|
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~-~~~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~---------------~~~ 67 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD---------------AKF 67 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHSCCC-CCCCSSCEEE-EEEEEETTEEEEEEEEECSSCCC---------------HHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCC-CcCCccceeE-EEEeecCceEEEEEEeecccccc---------------ccc
Confidence 369999999999999999999998753 2333323222 33455555 588999999531 135
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHH-HHHHHhc------cCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhh
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDL-EYASWLG------QNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFF 274 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~-~l~~~~~------~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (308)
++.+ |++++|+|.++..++... .+..++. ....|+++|+||.|+...... .+..+..+.+....
T Consensus 68 ~~~a---d~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~--~v~~~~~~~~~~~~---- 138 (175)
T d2bmja1 68 SGWA---DAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPR--VVGDARARALCADM---- 138 (175)
T ss_dssp HHHC---SEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCC--CSCHHHHHHHHHTS----
T ss_pred cccc---ceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhc--chhHHHHHHHHHHh----
Confidence 5554 458999999987766553 2333332 256789999999997654321 13444454443322
Q ss_pred cCCCCEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 021750 275 QTAPPWIMTSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 275 ~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
..++|++|||++|.|++++|..+.+.+...+
T Consensus 139 -~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~ 169 (175)
T d2bmja1 139 -KRCSYYETCATYGLNVDRVFQEVAQKVVTLR 169 (175)
T ss_dssp -TTEEEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred -CCCeEEEeCCCCCcCHHHHHHHHHHHHHHhh
Confidence 1368999999999999999999887665544
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.83 E-value=6.6e-21 Score=157.38 Aligned_cols=158 Identities=19% Similarity=0.169 Sum_probs=106.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC---CEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND---SWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
.||+++|.+|||||||+++++.+++.....++.+.. ....+..++ .+.+||++|.... ......++
T Consensus 3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~----------~~~~~~~~ 71 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN-YTASFEIDTQRIELSLWDTSGSPYY----------DNVRPLSY 71 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEECSSCEEEEEEEEECCSGGG----------TTTGGGGC
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeec-ccccccccceEEeeccccccccccc----------cccccchh
Confidence 489999999999999999999987654444433322 223344444 5789999996431 11233333
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHH--HHHHhc--cCCCCEEEEeecCCCCCccc--------CCCCCchhhHHHHHHHH
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLE--YASWLG--QNQIPMTLVFTKCDKRKKKK--------NGGKRPEENLNDFQELI 270 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~--l~~~~~--~~~~pvivV~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~ 270 (308)
. .++++++|+|.++..++.... +...+. ..+.|+++|+||+|+..... ....+..++...+.+.+
T Consensus 72 ~---~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~ 148 (179)
T d1m7ba_ 72 P---DSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 148 (179)
T ss_dssp T---TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred h---hhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHh
Confidence 3 345699999999877655431 111111 25899999999999865321 11224556666666655
Q ss_pred HhhhcCCCCEEEeecCCCC-CHHHHHHHHHHHH
Q 021750 271 QGFFQTAPPWIMTSSVTNQ-GRDEILLHMAQLR 302 (308)
Q Consensus 271 ~~~~~~~~~~~~vSA~~g~-gi~el~~~i~~~~ 302 (308)
+ ..+|++|||++|+ |++++|+.+.+.+
T Consensus 149 ~-----~~~y~E~SAk~~~n~i~~~F~~~~~~~ 176 (179)
T d1m7ba_ 149 G-----AATYIECSALQSENSVRDIFHVATLAC 176 (179)
T ss_dssp T-----CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred C-----CCeEEEEeCCCCCcCHHHHHHHHHHHH
Confidence 4 3689999999998 4999999988765
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.82 E-value=3e-20 Score=155.48 Aligned_cols=160 Identities=21% Similarity=0.220 Sum_probs=105.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcc-eeccCCCCceEEE----EEEE---------------------e-CCCEEEec
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKL-ALTSKTPGKTQCI----NHFR---------------------I-NDSWYLVD 177 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~-~~~~~~~~~t~~~----~~~~---------------------~-~~~~~liD 177 (308)
..+|+++|..++|||||+++|++.... .......|.|... .... . ..++.++|
T Consensus 5 ~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD 84 (195)
T d1kk1a3 5 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 84 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred cEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeec
Confidence 348999999999999999999874210 0111111222110 0000 0 11378999
Q ss_pred CCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCC-hhHHHHHHHhccCC-CCEEEEeecCCCCCcccCC
Q 021750 178 LPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAK-PIDLEYASWLGQNQ-IPMTLVFTKCDKRKKKKNG 255 (308)
Q Consensus 178 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~-~~~~~l~~~~~~~~-~pvivV~NK~Dl~~~~~~~ 255 (308)
|||.. .|.....+....+|++++|+|+..+.. .+..+....+...+ .++++++||+|+.+...
T Consensus 85 tPGh~-------------~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~-- 149 (195)
T d1kk1a3 85 APGHE-------------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEK-- 149 (195)
T ss_dssp CSSHH-------------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHH--
T ss_pred cchhh-------------hhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhHH--
Confidence 99953 266666667777888999999998753 33334444444434 45788999999987543
Q ss_pred CCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 256 GKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
..+..+.+.+.+.......++++++||++|+|+++|++.|.+.+
T Consensus 150 ---~~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i 193 (195)
T d1kk1a3 150 ---ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 193 (195)
T ss_dssp ---HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred ---HHHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence 33444555555555444568999999999999999999988753
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.82 E-value=6.4e-20 Score=150.14 Aligned_cols=157 Identities=15% Similarity=0.096 Sum_probs=102.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYF 202 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 202 (308)
+..+||+++|.+|||||||+++|.+.++ ....+..+.+... ....+.++.++|++|..... ..+..++
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~----------~~~~~~~ 80 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEE-IVINNTRFLMWDIGGQESLR----------SSWNTYY 80 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSC-EEEECCSCSSCEE-EEETTEEEEEEECCC----C----------GGGHHHH
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCCC-CccccccceeEEE-EeecceEEEEeccccccccc----------cchhhhh
Confidence 3457999999999999999999999865 3444444433221 12223478999998854211 1233333
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHH--HHH---hccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--hc
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEY--ASW---LGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--FQ 275 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l--~~~---~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 275 (308)
.. .+.+++++|.++..+...... ... ......|+++|+||+|+..... ..+..+.+... ..
T Consensus 81 ~~---~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~---------~~~i~~~~~~~~~~~ 148 (177)
T d1zj6a1 81 TN---TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT---------VAEISQFLKLTSIKD 148 (177)
T ss_dssp TT---CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC---------HHHHHHHHTGGGCCS
T ss_pred cc---ceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc---------HHHHHHHHHHHhhHh
Confidence 33 345899999988776544321 111 1237899999999999876432 23333333221 22
Q ss_pred CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 276 TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 276 ~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
..++++++||++|+|++++++||.+.++
T Consensus 149 ~~~~~~~~Sa~tg~Gi~e~~~~L~~~lk 176 (177)
T d1zj6a1 149 HQWHIQACCALTGEGLCQGLEWMMSRLK 176 (177)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 3468999999999999999999998763
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.82 E-value=1.3e-19 Score=152.77 Aligned_cols=159 Identities=16% Similarity=0.221 Sum_probs=107.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcc--e-----eccCCCCce-EEEEE------------------------EEeCCCE
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKL--A-----LTSKTPGKT-QCINH------------------------FRINDSW 173 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~--~-----~~~~~~~~t-~~~~~------------------------~~~~~~~ 173 (308)
.+|+++|..++|||||+++|++.... . ......+.+ ..... ......+
T Consensus 9 ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 88 (205)
T d2qn6a3 9 VNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRI 88 (205)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEE
T ss_pred eEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceEEE
Confidence 59999999999999999999873210 0 000000000 00000 0001247
Q ss_pred EEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-ChhHHHHHHHhccCCC-CEEEEeecCCCCCc
Q 021750 174 YLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-KPIDLEYASWLGQNQI-PMTLVFTKCDKRKK 251 (308)
Q Consensus 174 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~-~~~~~~l~~~~~~~~~-pvivV~NK~Dl~~~ 251 (308)
.++||||.. .|.+..+.....+|++++|+|+..+. ..+..+....+...++ |+||++||+|+.+.
T Consensus 89 ~iiD~PGH~-------------df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~ 155 (205)
T d2qn6a3 89 SFIDAPGHE-------------VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSK 155 (205)
T ss_dssp EEEECSCHH-------------HHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCH
T ss_pred EEeccchHH-------------HHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCccc
Confidence 899999953 27777778888899999999999886 4444455555555554 88999999999875
Q ss_pred ccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 252 KKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.+ .......+.+.+.......++++++||++|.|+++|++.|.+.+
T Consensus 156 ~~-----~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i 201 (205)
T d2qn6a3 156 EE-----ALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 201 (205)
T ss_dssp HH-----HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred hH-----HHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence 43 23334444555544444568999999999999999999887653
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.80 E-value=1.5e-18 Score=139.95 Aligned_cols=155 Identities=14% Similarity=0.109 Sum_probs=101.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
..||+++|.+|||||||+++|+++++. .+.++.+. .......+. .+.++|.+|..... .... .
T Consensus 5 e~kI~ivG~~~vGKSSLi~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~---~ 68 (169)
T d1upta_ 5 EMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGF--NVETVTYKNLKFQVWDLGGLTSIR----------PYWR---C 68 (169)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSE--EEEEEEETTEEEEEEEECCCGGGG----------GGGG---G
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc-ceecccce--eeeeeccCceEEEEeecccccccc----------ccch---h
Confidence 368999999999999999999998653 23333332 223333333 78889988864311 1111 2
Q ss_pred hcCCccEEEEEEeCCCCCChhHHH--HHHHh---ccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh--hcC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLE--YASWL---GQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--FQT 276 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~--l~~~~---~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 276 (308)
.....+.+++++|..+........ +.... .....|+++|+||+|+..... ..++...+... ...
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~---------~~~i~~~~~~~~~~~~ 139 (169)
T d1upta_ 69 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT---------SSEMANSLGLPALKDR 139 (169)
T ss_dssp GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---------HHHHHHHHTGGGCTTS
T ss_pred hhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc---------HHHHHHHHHHHHHhcC
Confidence 233445689999988766554431 11111 236789999999999986442 22333333221 224
Q ss_pred CCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 277 APPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 277 ~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
.++|++|||++|+||+++|++|.+.+++
T Consensus 140 ~~~~~~~SA~~g~gv~e~~~~l~~~l~~ 167 (169)
T d1upta_ 140 KWQIFKTSATKGTGLDEAMEWLVETLKS 167 (169)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999987754
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.79 E-value=2e-19 Score=150.52 Aligned_cols=159 Identities=18% Similarity=0.230 Sum_probs=110.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCC------c--c------eeccCCCCceEEEEE--EEeCC-CEEEecCCCcccCCCch
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRK------K--L------ALTSKTPGKTQCINH--FRIND-SWYLVDLPGYGYAAAPR 188 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~------~--~------~~~~~~~~~t~~~~~--~~~~~-~~~liDtpG~~~~~~~~ 188 (308)
.+|+++|..++|||||+++|++.- . . .......|.|.+... +.+.+ .+.++||||+.
T Consensus 4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~------ 77 (196)
T d1d2ea3 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA------ 77 (196)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH------
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchH------
Confidence 489999999999999999998510 0 0 011223366665433 33333 79999999954
Q ss_pred hhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCC-CCEEEEeecCCCCCcccCCCCCchhhHHHHH
Q 021750 189 ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQ-IPMTLVFTKCDKRKKKKNGGKRPEENLNDFQ 267 (308)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~-~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~ 267 (308)
.|.+...+....+|++++|+|+..+...+..+...++...+ +|+|+++||+|+....+ ..+...+++.
T Consensus 78 -------~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~~~----~~~~i~~~i~ 146 (196)
T d1d2ea3 78 -------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSE----MVELVELEIR 146 (196)
T ss_dssp -------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHH----HHHHHHHHHH
T ss_pred -------HHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccccccHH----HHHHHHHHHH
Confidence 26777778888899999999999999988887777776655 57889999999975321 0111122333
Q ss_pred HHHHhh--hcCCCCEEEeecCCC----------CCHHHHHHHHHHH
Q 021750 268 ELIQGF--FQTAPPWIMTSSVTN----------QGRDEILLHMAQL 301 (308)
Q Consensus 268 ~~~~~~--~~~~~~~~~vSA~~g----------~gi~el~~~i~~~ 301 (308)
+.+... .....|++++||++| +|+.+|++.|.+.
T Consensus 147 ~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~ 192 (196)
T d1d2ea3 147 ELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY 192 (196)
T ss_dssp HHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence 333322 123478999999998 5888888887654
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=1.4e-18 Score=139.26 Aligned_cols=149 Identities=22% Similarity=0.237 Sum_probs=97.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC-CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN-DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR 205 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (308)
||+++|++|||||||+|+|+++++ +.+.++.+.+.. ..... ....++|++|..... .....++.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~-~~~~~t~~~~~~--~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~-- 66 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRL-ATLQPTWHPTSE--ELAIGNIKFTTFDLGGHIQAR----------RLWKDYFP-- 66 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC-CCCCCCCSCEEE--EECCTTCCEEEEECCCSGGGG----------GGGGGGCT--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-CeeeceeeEeEE--EeccCCeeEEEEeeccchhhh----------hhHhhhhh--
Confidence 799999999999999999999865 455555555443 33333 378999999864211 12223222
Q ss_pred CCccEEEEEEeCCCCCChhHHH-H-HH---HhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHh-------h
Q 021750 206 STLVSVFLLIDASIPAKPIDLE-Y-AS---WLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQG-------F 273 (308)
Q Consensus 206 ~~~~~vl~viD~~~~~~~~~~~-l-~~---~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-------~ 273 (308)
..+.+++++|.++........ + .. .....+.|+++++||+|+..... ..++.+.+.. .
T Consensus 67 -~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~---------~~~i~~~~~~~~~~~~~~ 136 (166)
T d2qtvb1 67 -EVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS---------EAELRSALGLLNTTGSQR 136 (166)
T ss_dssp -TCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCC---------HHHHHHHHTCSSCCC---
T ss_pred -heeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCC---------HHHHHHHhhhhhhhHHHh
Confidence 344589999998765543321 1 11 12236789999999999976432 2222222211 0
Q ss_pred --hcCCCCEEEeecCCCCCHHHHHHHHHH
Q 021750 274 --FQTAPPWIMTSSVTNQGRDEILLHMAQ 300 (308)
Q Consensus 274 --~~~~~~~~~vSA~~g~gi~el~~~i~~ 300 (308)
....+++++|||++|+|++|+|+||.+
T Consensus 137 ~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~ 165 (166)
T d2qtvb1 137 IEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165 (166)
T ss_dssp CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred hcccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence 112357899999999999999999865
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.75 E-value=4.7e-18 Score=143.00 Aligned_cols=145 Identities=17% Similarity=0.223 Sum_probs=98.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCC----------cceeccCC-----CCceEEE--EEEEeCC-CEEEecCCCcccCCCc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRK----------KLALTSKT-----PGKTQCI--NHFRIND-SWYLVDLPGYGYAAAP 187 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~----------~~~~~~~~-----~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~ 187 (308)
.+|+++|.+++|||||+++|+... ........ .|+|.+. ..+.+++ ++.++||||+.+
T Consensus 4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~d---- 79 (204)
T d2c78a3 4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD---- 79 (204)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG----
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchh----
Confidence 489999999999999999997420 00011111 1555543 3455555 799999999753
Q ss_pred hhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecCCCCCcccCCCCCchhhHHHH
Q 021750 188 RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKCDKRKKKKNGGKRPEENLNDF 266 (308)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~Dl~~~~~~~~~~~~~~~~~~ 266 (308)
|....+.....+|++++|+|+..+...+..+...++...++| +++++||+|+.+..+ ...+..+++
T Consensus 80 ---------f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~~~----~~~~~~~~i 146 (204)
T d2c78a3 80 ---------YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPE----LLDLVEMEV 146 (204)
T ss_dssp ---------GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHH----HHHHHHHHH
T ss_pred ---------hHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecccCCCHH----HHHHHHHHH
Confidence 556666777778889999999999999988888888888876 677899999975321 011222333
Q ss_pred HHHHHhh--hcCCCCEEEeecCC
Q 021750 267 QELIQGF--FQTAPPWIMTSSVT 287 (308)
Q Consensus 267 ~~~~~~~--~~~~~~~~~vSA~~ 287 (308)
.+.+... .....+++++||..
T Consensus 147 ~~~l~~~~~~~~~i~~i~~sa~~ 169 (204)
T d2c78a3 147 RDLLNQYEFPGDEVPVIRGSALL 169 (204)
T ss_dssp HHHHHHTTSCTTTSCEEECCHHH
T ss_pred HHHHHhcCCCcccceeeeeechh
Confidence 3333321 12347889999863
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.75 E-value=5.2e-18 Score=138.87 Aligned_cols=155 Identities=20% Similarity=0.237 Sum_probs=94.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY 201 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 201 (308)
+...||+++|.+|||||||+++|++..+ ..+.+..+.+.. .+..++ .+..+|++|...... ....+
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 77 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSE--ELTIAGMTFTTFDLGGHIQARR----------VWKNY 77 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEETTEEEEEEEECC----CC----------GGGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-cceeccccccee--EEEecccccccccccchhhhhh----------HHhhh
Confidence 3456999999999999999999999864 333344443332 334444 677888888643221 12222
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHH--HHHH---hccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh---
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLE--YASW---LGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF--- 273 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~--l~~~---~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--- 273 (308)
+.. .+.+++++|.++........ +... ....++|+++++||.|+..... ...+.+.+...
T Consensus 78 ~~~---~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~---------~~~i~~~~~~~~~~ 145 (186)
T d1f6ba_ 78 LPA---INGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAIS---------EERLREMFGLYGQT 145 (186)
T ss_dssp GGG---CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCC---------HHHHHHHHTCTTTC
T ss_pred hcc---cceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCC---------HHHHHHHHhhcccc
Confidence 232 34589999988765544321 1111 1236899999999999876432 22233333211
Q ss_pred -----------hcCCCCEEEeecCCCCCHHHHHHHHHHHH
Q 021750 274 -----------FQTAPPWIMTSSVTNQGRDEILLHMAQLR 302 (308)
Q Consensus 274 -----------~~~~~~~~~vSA~~g~gi~el~~~i~~~~ 302 (308)
.....++++|||++|+|++|+|+||.+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 146 TGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185 (186)
T ss_dssp CCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred hhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence 11124699999999999999999998754
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=1.2e-17 Score=136.62 Aligned_cols=162 Identities=23% Similarity=0.261 Sum_probs=103.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE-E-EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHH-
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC-I-NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDY- 201 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~-~-~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~- 201 (308)
..|+|+|.+|||||||+|+|++.+. ..++..++++.. . .....+. .+..+|++|...... . ........+
T Consensus 6 ~~I~iiG~~nvGKSSLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~ 79 (179)
T d1egaa1 6 GFIAIVGRPNVGKSTLLNKLLGQKI-SITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK-R----AINRLMNKAA 79 (179)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSE-EECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH-H----HHHHHHTCCT
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc-eeeccCCCceEEEEEeeeecCCceeEeecCCCceecch-h----hhhhhhhhcc
Confidence 3589999999999999999999763 555555554432 2 2222333 577789998642110 0 000011110
Q ss_pred HHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEE
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWI 281 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (308)
......+++++++.|..... .....+...+.....|.++|+||+|+.... ..+....+.+..... ..+++
T Consensus 80 ~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~l~~~~~~~i~v~~k~d~~~~~--------~~~~~~~~~~~~~~~-~~~~~ 149 (179)
T d1egaa1 80 SSSIGDVELVIFVVEGTRWT-PDDEMVLNKLREGKAPVILAVNKVDNVQEK--------ADLLPHLQFLASQMN-FLDIV 149 (179)
T ss_dssp TSCCCCEEEEEEEEETTCCC-HHHHHHHHHHHSSSSCEEEEEESTTTCCCH--------HHHHHHHHHHHTTSC-CSEEE
T ss_pred ccchhhcceeEEEEecCccc-hhHHHHHHHhhhccCceeeeeeeeeccchh--------hhhhhHhhhhhhhcC-CCCEE
Confidence 11223456788888877543 334445556666788999999999988642 233444444444333 36899
Q ss_pred EeecCCCCCHHHHHHHHHHHHH
Q 021750 282 MTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 282 ~vSA~~g~gi~el~~~i~~~~~ 303 (308)
++||++|+|+++|+++|.+.+.
T Consensus 150 ~vSA~~g~gi~~L~~~i~~~lp 171 (179)
T d1egaa1 150 PISAETGLNVDTIAAIVRKHLP 171 (179)
T ss_dssp ECCTTTTTTHHHHHHHHHTTCC
T ss_pred EEeCcCCCCHHHHHHHHHHhCC
Confidence 9999999999999999987653
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.72 E-value=8.4e-18 Score=155.32 Aligned_cols=170 Identities=17% Similarity=0.162 Sum_probs=106.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcc---eeccCCCCceEEEEEEEeCC--CEEEecCCCcccCCCchhhhhchHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKL---ALTSKTPGKTQCINHFRIND--SWYLVDLPGYGYAAAPRELRTDWDKFTK 199 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~---~~~~~~~~~t~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~ 199 (308)
..+|+|+|.+|||||||+|+|+|.... ...+...++|.....+...+ .+++|||||++......+ ..+.
T Consensus 56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~------~~~~ 129 (400)
T d1tq4a_ 56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPD------TYLE 129 (400)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHH------HHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHH------HHHH
Confidence 469999999999999999999984321 22333445566555555433 799999999976432221 1222
Q ss_pred HHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCC----CCCchhhHHHHHHHHHh---
Q 021750 200 DYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNG----GKRPEENLNDFQELIQG--- 272 (308)
Q Consensus 200 ~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~--- 272 (308)
. .....+|+++++.| ...+..+.++..++...++|+++|+||+|.....+.. ....+..++.+.+.+..
T Consensus 130 ~--~~~~~~d~~l~~~~--~~~~~~d~~l~~~l~~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~ 205 (400)
T d1tq4a_ 130 K--MKFYEYDFFIIISA--TRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR 205 (400)
T ss_dssp H--TTGGGCSEEEEEES--SCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred H--hhhhcceEEEEecC--CCCCHHHHHHHHHHHHcCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHH
Confidence 2 22334455655555 4577888888899988999999999999964221100 00122334444333332
Q ss_pred -hhcCCCCEEEeecCC--CCCHHHHHHHHHHHHHH
Q 021750 273 -FFQTAPPWIMTSSVT--NQGRDEILLHMAQLRNY 304 (308)
Q Consensus 273 -~~~~~~~~~~vSA~~--g~gi~el~~~i~~~~~~ 304 (308)
......++|.+|... ..|+.+|.+.+.+.+..
T Consensus 206 ~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~ 240 (400)
T d1tq4a_ 206 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 240 (400)
T ss_dssp HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred HcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence 223457889999764 56899999999887644
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.72 E-value=2.6e-17 Score=139.98 Aligned_cols=156 Identities=19% Similarity=0.232 Sum_probs=103.2
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCCcc---------eeccCC----------------------CCceEE--EEEEE
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVRRKKL---------ALTSKT----------------------PGKTQC--INHFR 168 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~~~~~---------~~~~~~----------------------~~~t~~--~~~~~ 168 (308)
++..++|+++|..++|||||+++|+..... ...+.. .+.+.. ...+.
T Consensus 6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 85 (222)
T d1zunb3 6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 85 (222)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence 445678999999999999999999742100 000000 111211 22233
Q ss_pred eCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCC-EEEEeecC
Q 021750 169 IND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIP-MTLVFTKC 246 (308)
Q Consensus 169 ~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~p-vivV~NK~ 246 (308)
..+ ++.++||||... |..........+|++++|+|+..+...+..+....+...+++ +|+++||+
T Consensus 86 ~~~~~~~iiD~PGH~d-------------fv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~ 152 (222)
T d1zunb3 86 TAKRKFIIADTPGHEQ-------------YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKM 152 (222)
T ss_dssp CSSEEEEEEECCCSGG-------------GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECT
T ss_pred ccceEEEEEeccchhh-------------hhhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEcc
Confidence 333 799999999753 566666777888999999999999998888888888878866 78999999
Q ss_pred CCCCcccCCCCCchhhHHHHHHHHHhhhc--CCCCEEEeecCCCCCHHH
Q 021750 247 DKRKKKKNGGKRPEENLNDFQELIQGFFQ--TAPPWIMTSSVTNQGRDE 293 (308)
Q Consensus 247 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vSA~~g~gi~e 293 (308)
|+.+..+. ...+..+++...+....- ..++++++||++|+|+.+
T Consensus 153 D~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~ 198 (222)
T d1zunb3 153 DLNGFDER---VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 198 (222)
T ss_dssp TTTTSCHH---HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred ccccccce---ehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence 99864321 022223334444433211 235789999999999843
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.69 E-value=1.4e-16 Score=133.66 Aligned_cols=110 Identities=19% Similarity=0.253 Sum_probs=70.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeC--C--CEEEecCCCcccCCCchhhhhchH-HHHHHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIN--D--SWYLVDLPGYGYAAAPRELRTDWD-KFTKDY 201 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~--~--~~~liDtpG~~~~~~~~~~~~~~~-~~~~~~ 201 (308)
+|+|+|.+|||||||+|+|+++++ ....++.+.+.. .+.+. . .+.+||+||.. .++ ..+..+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~-~~~~~t~~~~~~--~~~~~~~~~~~~~~~d~~g~~----------~~~~~~~~~~ 68 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSA--IYKVNNNRGNSLTLIDLPGHE----------SLRFQLLDRF 68 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC-CCBCCCCSCEEE--EEECSSTTCCEEEEEECCCCH----------HHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CcccCCeeEEEE--EEEEeeeeeeeeeeeeccccc----------cccchhhhhh
Confidence 699999999999999999999765 333333344333 33332 1 58899999953 222 244444
Q ss_pred HHhcCCccEEEEEEeCCCCCChhH---HHHHHHhc-----cCCCCEEEEeecCCCCCcc
Q 021750 202 FLNRSTLVSVFLLIDASIPAKPID---LEYASWLG-----QNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 202 ~~~~~~~~~vl~viD~~~~~~~~~---~~l~~~~~-----~~~~pvivV~NK~Dl~~~~ 252 (308)
+.. ++.+++|+|+++...... ..+..++. ...+|++||+||+|+....
T Consensus 69 ~~~---~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~ 124 (207)
T d2fh5b1 69 KSS---ARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 124 (207)
T ss_dssp GGG---EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred hhh---ccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence 443 345899999986543211 12222222 2568999999999998654
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=9.9e-17 Score=133.34 Aligned_cols=162 Identities=17% Similarity=0.219 Sum_probs=97.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
..||+++|.+|||||||++++. +.....++.| .....+.... .+.+||++|.. .++..+..++.
T Consensus 2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG--~~~~~~~~~~~~~~~~D~~gq~----------~~~~~~~~~~~ 66 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKG--IHEYDFEIKNVPFKMVDVGGQR----------SERKRWFECFD 66 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSS--EEEEEEEETTEEEEEEEECC-----------------CTTSCT
T ss_pred eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeee--eEEEEEeeeeeeeeeeccccee----------eeccccccccc
Confidence 4699999999999999999993 3233344444 3344555555 79999999964 22334445544
Q ss_pred hcCCccEEEEEEeCCCCCChh---------HH---HHHHHhc---cCCCCEEEEeecCCCCCcccCCC---------CCc
Q 021750 204 NRSTLVSVFLLIDASIPAKPI---------DL---EYASWLG---QNQIPMTLVFTKCDKRKKKKNGG---------KRP 259 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~---------~~---~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~---------~~~ 259 (308)
... .+++++|.++..... +. .+..++. ..+.|+++++||+|+.+...... ...
T Consensus 67 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~ 143 (200)
T d1zcba2 67 SVT---SILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGD 143 (200)
T ss_dssp TCC---EEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSC
T ss_pred ccc---eeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCC
Confidence 444 488999988754321 11 1112222 36899999999999864321100 001
Q ss_pred hhhHHHHHHHHHhhhc--------CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 260 EENLNDFQELIQGFFQ--------TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 260 ~~~~~~~~~~~~~~~~--------~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
....+...+.+...|. ..+.++++||++++||+++|+.+.+.+-+
T Consensus 144 ~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~ 196 (200)
T d1zcba2 144 PHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 196 (200)
T ss_dssp TTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence 1222333333333221 12445679999999999999999887643
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.66 E-value=1.2e-15 Score=127.53 Aligned_cols=113 Identities=19% Similarity=0.248 Sum_probs=72.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEE--EEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQC--INHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
..|.|+|+|.||||||||+|+|++.+..+ ++|.. ...+..++ .+.+|||||... +...+..
T Consensus 2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~------~tt~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~ 65 (209)
T d1nrjb_ 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP------TVVSQEPLSAADYDGSGVTLVDFPGHVK----------LRYKLSD 65 (209)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCC------BCCCSSCEEETTGGGSSCEEEECCCCGG----------GTHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC------eEEecceEEEEEeCCeEEEEEecccccc----------hhhHHHH
Confidence 35799999999999999999999976432 22222 22222333 799999999642 1123333
Q ss_pred HH-HhcCCccEEEEEEeCCCCCChh-HH--------HHHHHhccCCCCEEEEeecCCCCCcc
Q 021750 201 YF-LNRSTLVSVFLLIDASIPAKPI-DL--------EYASWLGQNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 201 ~~-~~~~~~~~vl~viD~~~~~~~~-~~--------~l~~~~~~~~~pvivV~NK~Dl~~~~ 252 (308)
++ ......+.+++++|+....... +. .........++|+++|+||+|+....
T Consensus 66 ~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~ 127 (209)
T d1nrjb_ 66 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 127 (209)
T ss_dssp HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence 33 3334456688999987543321 11 11222334789999999999997644
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=3.8e-17 Score=135.02 Aligned_cols=159 Identities=14% Similarity=0.133 Sum_probs=99.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHh
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 204 (308)
.||+++|..|||||||+++|...++ ++.+.....+.... .+.+|||+|.. .++.++..|+..
T Consensus 3 ~KivllG~~~vGKTsl~~r~~~~~~-------~t~~~~~~~~~~~~~~~~i~D~~Gq~----------~~~~~~~~~~~~ 65 (195)
T d1svsa1 3 VKLLLLGAGESGKSTIVKQMKIIHE-------AGTGIVETHFTFKDLHFKMFDVGGQR----------SERKKWIHCFEG 65 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHS-------CCCSEEEEEEEETTEEEEEEEECCSG----------GGGGGGGGGCTT
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-------CCccEEEEEEEeeeeeeeeecccccc----------ccccchhhcccC
Confidence 5899999999999999999986543 22222333444444 78999999953 455567777766
Q ss_pred cCCccEEEEEEeCCCCCChh---------HHH---HHHHhc---cCCCCEEEEeecCCCCCcccCC------------CC
Q 021750 205 RSTLVSVFLLIDASIPAKPI---------DLE---YASWLG---QNQIPMTLVFTKCDKRKKKKNG------------GK 257 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~~---------~~~---l~~~~~---~~~~pvivV~NK~Dl~~~~~~~------------~~ 257 (308)
..+ +++|+|.++..+.. ... +...+. ....|+++++||+|+...+... ..
T Consensus 66 ~~~---~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~ 142 (195)
T d1svsa1 66 VTA---IIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSN 142 (195)
T ss_dssp CSE---EEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCS
T ss_pred Cce---eeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcc
Confidence 555 89999987553321 111 111111 3678999999999974322110 00
Q ss_pred CchhhHHHHHHHHHhhhc----CCCCEEEeecCCCCCHHHHHHHHHHHHHH
Q 021750 258 RPEENLNDFQELIQGFFQ----TAPPWIMTSSVTNQGRDEILLHMAQLRNY 304 (308)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~----~~~~~~~vSA~~g~gi~el~~~i~~~~~~ 304 (308)
...+....+...+.+... ..+.++++||++++||+++|+.+.+.+-+
T Consensus 143 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~ 193 (195)
T d1svsa1 143 TYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 193 (195)
T ss_dssp SHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence 011112222223322111 23457789999999999999999987754
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.63 E-value=1.7e-15 Score=132.20 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=81.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCC----ccee------ccC------CCCceE--EEEEEEeCC-CEEEecCCCcccCC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRK----KLAL------TSK------TPGKTQ--CINHFRIND-SWYLVDLPGYGYAA 185 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~----~~~~------~~~------~~~~t~--~~~~~~~~~-~~~liDtpG~~~~~ 185 (308)
+.+|+++|..++|||||+.+|+... +... +.+ ..+.+. ....+.+++ ++.++||||+.+..
T Consensus 6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~ 85 (276)
T d2bv3a2 6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT 85 (276)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhH
Confidence 4589999999999999999997521 0000 010 112222 234566666 89999999986522
Q ss_pred CchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 186 APRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
.+.......+|.+++|+|+..+...+...+.+++...++|.++++||+|....
T Consensus 86 -------------~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~a 138 (276)
T d2bv3a2 86 -------------IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 138 (276)
T ss_dssp -------------TTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTSTTC
T ss_pred -------------HHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEeccccccc
Confidence 22223344566799999999999999888899999999999999999998764
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.63 E-value=2.4e-16 Score=130.63 Aligned_cols=163 Identities=15% Similarity=0.160 Sum_probs=101.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHHh
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN 204 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 204 (308)
.||+++|..|||||||+++|....+. +.++.|. ....+.... .+.+||++|.. .++..+..++..
T Consensus 3 ~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~--~~~~~~~~~~~~~~~d~~g~~----------~~~~~~~~~~~~ 68 (200)
T d2bcjq2 3 LKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGI--IEYPFDLQSVIFRMVDVGGQR----------SERRKWIHCFEN 68 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSC--EEEEEECSSCEEEEEECCCST----------TGGGGGGGGCSS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeE--EEEEEeccceeeeeccccccc----------cccccccccccc
Confidence 59999999999999999999887642 3344443 334444444 78999999964 333455566554
Q ss_pred cCCccEEEEEEeCCCCCCh---------hH--H-HHHHHhc---cCCCCEEEEeecCCCCCcccCCC---------CCch
Q 021750 205 RSTLVSVFLLIDASIPAKP---------ID--L-EYASWLG---QNQIPMTLVFTKCDKRKKKKNGG---------KRPE 260 (308)
Q Consensus 205 ~~~~~~vl~viD~~~~~~~---------~~--~-~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~---------~~~~ 260 (308)
.. .+++++|.++.... .. . .+...+. ..+.|+++++||+|+........ ....
T Consensus 69 ~~---~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 145 (200)
T d2bcjq2 69 VT---SIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQ 145 (200)
T ss_dssp CS---EEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCS
T ss_pred cc---eeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCc
Confidence 44 48999998764321 11 1 1222222 26799999999999864332110 0011
Q ss_pred hhHHHHHHHHHhhh-------cCCCCEEEeecCCCCCHHHHHHHHHHHHHHH
Q 021750 261 ENLNDFQELIQGFF-------QTAPPWIMTSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 261 ~~~~~~~~~~~~~~-------~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
...+...+.+...+ ...+.++++||++|+||+++|+.+.+.+-+.
T Consensus 146 ~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~ 197 (200)
T d2bcjq2 146 RDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 197 (200)
T ss_dssp SCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence 11222222222111 1224578999999999999999999887654
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.59 E-value=9.3e-15 Score=127.06 Aligned_cols=111 Identities=22% Similarity=0.258 Sum_probs=82.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCc----ce------eccC------CCCceE--EEEEEEeCC-CEEEecCCCcccCCC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKK----LA------LTSK------TPGKTQ--CINHFRIND-SWYLVDLPGYGYAAA 186 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~----~~------~~~~------~~~~t~--~~~~~~~~~-~~~liDtpG~~~~~~ 186 (308)
.+|+++|..++|||||+.+|+.... .. .+.+ ..+.|. ....+.+++ ++.++||||+.+
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~d--- 79 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD--- 79 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG---
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhh---
Confidence 4799999999999999999964210 00 0011 112222 234566666 899999999763
Q ss_pred chhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCC
Q 021750 187 PRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249 (308)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~ 249 (308)
|..+.......+|.+++|+|+..+...+..++.+++.+.++|.++++||+|..
T Consensus 80 ----------F~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 80 ----------FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 132 (267)
T ss_dssp ----------GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred ----------hhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhccccccccccccccc
Confidence 45555555566677999999999999998888899999999999999999974
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.58 E-value=1.4e-15 Score=131.20 Aligned_cols=153 Identities=19% Similarity=0.214 Sum_probs=87.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcc-----------------------e------eccCCCCceEEE--EEEEeCC-CE
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKL-----------------------A------LTSKTPGKTQCI--NHFRIND-SW 173 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~-----------------------~------~~~~~~~~t~~~--~~~~~~~-~~ 173 (308)
.+|+++|..++|||||+.+|+..-.. . ......|.+... ..+.++. ++
T Consensus 25 iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~i 104 (245)
T d1r5ba3 25 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRF 104 (245)
T ss_dssp EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEE
T ss_pred eEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccccee
Confidence 47999999999999999999531100 0 001111222221 1233333 79
Q ss_pred EEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-------ChhHHHHHHHhccCCCC-EEEEeec
Q 021750 174 YLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-------KPIDLEYASWLGQNQIP-MTLVFTK 245 (308)
Q Consensus 174 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~-------~~~~~~l~~~~~~~~~p-vivV~NK 245 (308)
.++||||... |....+.....+|++++|+|+..+. ..+..+....+...++| +++++||
T Consensus 105 ~~iDtPGH~d-------------f~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNK 171 (245)
T d1r5ba3 105 SLLDAPGHKG-------------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINK 171 (245)
T ss_dssp EECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEEC
T ss_pred eeeccccccc-------------chhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEc
Confidence 9999999753 6666667788889999999998763 11334445555555665 7799999
Q ss_pred CCCCCcccCCCCCchhhHHHHHHHHH----hhhc----CCCCEEEeecCCCCCHHHHHH
Q 021750 246 CDKRKKKKNGGKRPEENLNDFQELIQ----GFFQ----TAPPWIMTSSVTNQGRDEILL 296 (308)
Q Consensus 246 ~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~vSA~~g~gi~el~~ 296 (308)
+|+..... .++..+++.+.+. +... ..++++++||++|+||.++++
T Consensus 172 mD~~~~~~-----~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~ 225 (245)
T d1r5ba3 172 MDEPSVQW-----SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 225 (245)
T ss_dssp TTSTTCSS-----CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred CCCCccch-----hHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence 99975331 2333333333332 2211 126899999999999987643
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=3.4e-15 Score=128.09 Aligned_cols=152 Identities=18% Similarity=0.208 Sum_probs=99.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCc---------------------c--e------eccCCCCceEE--EEEEEeCC-CE
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKK---------------------L--A------LTSKTPGKTQC--INHFRIND-SW 173 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~---------------------~--~------~~~~~~~~t~~--~~~~~~~~-~~ 173 (308)
.+|+++|..++|||||+.+|+..-. . + ......|.|.+ ...+.+.+ ++
T Consensus 7 iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i 86 (239)
T d1f60a3 7 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV 86 (239)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEEE
Confidence 5899999999999999999963100 0 0 00112344443 23445544 89
Q ss_pred EEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-------ChhHHHHHHHhccCCCC-EEEEeec
Q 021750 174 YLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-------KPIDLEYASWLGQNQIP-MTLVFTK 245 (308)
Q Consensus 174 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~-------~~~~~~l~~~~~~~~~p-vivV~NK 245 (308)
.++||||+.+ |....+.....+|++++|+|+..+. ..+..+....+...++| +|+++||
T Consensus 87 ~iiDtPGH~d-------------f~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNK 153 (239)
T d1f60a3 87 TVIDAPGHRD-------------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNK 153 (239)
T ss_dssp EEEECCCCTT-------------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred EEEECCCcHH-------------HHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEEC
Confidence 9999999753 7888888999999999999998652 23344445555566776 7889999
Q ss_pred CCCCCcccCCCCCchhhHHHHHHHHHhhh--cCCCCEEEeecCCCCCHHH
Q 021750 246 CDKRKKKKNGGKRPEENLNDFQELIQGFF--QTAPPWIMTSSVTNQGRDE 293 (308)
Q Consensus 246 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vSA~~g~gi~e 293 (308)
+|+.+.... ...+..+++.+.+.... ...++++++||..|.|+.+
T Consensus 154 mD~~~~d~~---~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~ 200 (239)
T d1f60a3 154 MDSVKWDES---RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 200 (239)
T ss_dssp GGGGTTCHH---HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CCCCCCCHH---HHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence 998864321 01222333344333221 1237899999999998743
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.54 E-value=2.9e-14 Score=123.69 Aligned_cols=124 Identities=15% Similarity=0.087 Sum_probs=83.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKD 200 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 200 (308)
...+|+|+|.+|||||||+|+|++.+. ..++..+++|+.. ..+..++ .+.++||||+.+.....+ ........
T Consensus 31 ~~l~I~LvG~tg~GKSSliN~ilg~~~-~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~---~~~~~i~~ 106 (257)
T d1h65a_ 31 NSLTILVMGKGGVGKSSTVNSIIGERV-VSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIND---MALNIIKS 106 (257)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCC-SCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECH---HHHHHHHH
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCc-eeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHH---HHHHHHHH
Confidence 346999999999999999999999753 4566677777643 3334455 799999999976432222 22222222
Q ss_pred HHHhcCCccEEEEEEeCCCC-CChhHHHHHHHhc-----cCCCCEEEEeecCCCCCcc
Q 021750 201 YFLNRSTLVSVFLLIDASIP-AKPIDLEYASWLG-----QNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 201 ~~~~~~~~~~vl~viD~~~~-~~~~~~~l~~~~~-----~~~~pvivV~NK~Dl~~~~ 252 (308)
+ ......++++||++.+.. .+..+......+. ....++++|+||+|.....
T Consensus 107 ~-~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~ 163 (257)
T d1h65a_ 107 F-LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 163 (257)
T ss_dssp H-TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred H-HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcC
Confidence 2 334456778889888653 5555554444433 2346899999999988654
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.54 E-value=3.1e-14 Score=120.93 Aligned_cols=150 Identities=15% Similarity=0.210 Sum_probs=92.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcc-----------------------e------eccCCCCceEEE--EEEEeCC-CE
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKL-----------------------A------LTSKTPGKTQCI--NHFRIND-SW 173 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~-----------------------~------~~~~~~~~t~~~--~~~~~~~-~~ 173 (308)
.+|+++|..++|||||+.+|+..... . ......|.+... ..+.+++ .+
T Consensus 4 iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~i 83 (224)
T d1jnya3 4 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFF 83 (224)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEE
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCcee
Confidence 48999999999999999999641000 0 011122333332 3344444 79
Q ss_pred EEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCC-------hhHHHHHHHhccCC-CCEEEEeec
Q 021750 174 YLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAK-------PIDLEYASWLGQNQ-IPMTLVFTK 245 (308)
Q Consensus 174 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~-------~~~~~l~~~~~~~~-~pvivV~NK 245 (308)
.++||||+.. |..........+|++++|+|+..+.. .+-.+........+ .++|+++||
T Consensus 84 ~iiDtPGH~d-------------f~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK 150 (224)
T d1jnya3 84 TIIDAPGHRD-------------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNK 150 (224)
T ss_dssp EECCCSSSTT-------------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEEC
T ss_pred EEeeCCCcHH-------------HHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEc
Confidence 9999999753 77777788888999999999998732 12222222222223 468889999
Q ss_pred CCCCCcccCCCCCchhhHHHHHHHHHhh------hcCCCCEEEeecCCCCCHHH
Q 021750 246 CDKRKKKKNGGKRPEENLNDFQELIQGF------FQTAPPWIMTSSVTNQGRDE 293 (308)
Q Consensus 246 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~vSA~~g~gi~e 293 (308)
+|+..... .....+...+.+... .....+++++||..|.|+.+
T Consensus 151 ~D~~~~~~-----~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 151 MDLTEPPY-----DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp GGGSSSTT-----CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred ccCCCccc-----cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence 99875332 223333333333321 12346789999999999853
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.53 E-value=3.1e-14 Score=121.39 Aligned_cols=123 Identities=12% Similarity=0.064 Sum_probs=71.1
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHH-----hccCCCCEEEEeecC
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASW-----LGQNQIPMTLVFTKC 246 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~-----~~~~~~pvivV~NK~ 246 (308)
.+.++|+||...... +. .....+......+.+++++|+.............. ......|.++|+||+
T Consensus 96 ~~~~id~~g~~~~~~-------~~-~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~ 167 (244)
T d1yrba1 96 DYVLIDTPGQMETFL-------FH-EFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKV 167 (244)
T ss_dssp SEEEEECCSSHHHHH-------HS-HHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCG
T ss_pred ceeeeccccchhHHH-------HH-HHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeecc
Confidence 588999999753110 00 11122233334456899999986665443211111 113478999999999
Q ss_pred CCCCcccCCC-------------------CCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 247 DKRKKKKNGG-------------------KRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 247 Dl~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
|+....+... .........+.... +.+....+++++||++|+|+++|+.+|.+.+-
T Consensus 168 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~~ 242 (244)
T d1yrba1 168 DLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMM-TEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 242 (244)
T ss_dssp GGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHH-HHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HhhCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence 9987532000 00000001111111 12234579999999999999999999998864
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.49 E-value=7.9e-15 Score=124.42 Aligned_cols=160 Identities=14% Similarity=0.146 Sum_probs=97.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCC-CEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRIND-SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
..||+++|..|||||||++++...++ .++.| .....+.+++ .+.+||++|... ++..+.+++.
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~----~pTiG--~~~~~~~~~~~~~~~~D~~Gq~~----------~r~~w~~~~~ 69 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHV----VLTSG--IFETKFQVDKVNFHMFDVGGQRD----------ERRKWIQCFN 69 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHC----CCCCS--CEEEEEEETTEEEEEEECCCSTT----------TTTGGGGGCT
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCc----CCCCC--eEEEEEEECcEEEEEEecCccce----------eccchhhhcc
Confidence 35999999999999999999976532 23444 3344556666 799999999653 2234555554
Q ss_pred hcCCccEEEEEEeCCCCCC---------hhH---HHHHHHhc---cCCCCEEEEeecCCCCCcccCCCC-----------
Q 021750 204 NRSTLVSVFLLIDASIPAK---------PID---LEYASWLG---QNQIPMTLVFTKCDKRKKKKNGGK----------- 257 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~---------~~~---~~l~~~~~---~~~~pvivV~NK~Dl~~~~~~~~~----------- 257 (308)
... ++++++|.++... ... ..+...+. ..+.|++|++||+|+.+.+.....
T Consensus 70 ~~~---~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~ 146 (221)
T d1azta2 70 DVT---AIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFA 146 (221)
T ss_dssp TCS---EEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGG
T ss_pred ccc---ceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCcccc
Confidence 444 4899999875321 111 11222222 257999999999998654310000
Q ss_pred ------------CchhhHHHHHH----HHHhhhc------CCCCEEEeecCCCCCHHHHHHHHHHHHH
Q 021750 258 ------------RPEENLNDFQE----LIQGFFQ------TAPPWIMTSSVTNQGRDEILLHMAQLRN 303 (308)
Q Consensus 258 ------------~~~~~~~~~~~----~~~~~~~------~~~~~~~vSA~~g~gi~el~~~i~~~~~ 303 (308)
-......+..+ .+.+... ..+-++++||.+..||+.+|..+.+.+-
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~ 214 (221)
T d1azta2 147 RYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQ 214 (221)
T ss_dssp GCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHH
T ss_pred ccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHH
Confidence 00111222222 2221111 1133467999999999999999877654
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=2e-13 Score=121.93 Aligned_cols=91 Identities=12% Similarity=0.105 Sum_probs=53.3
Q ss_pred CccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhh----hcCCCCEEE
Q 021750 207 TLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGF----FQTAPPWIM 282 (308)
Q Consensus 207 ~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 282 (308)
.+|.+++|+++..+...+-.. ...+. .+-++|+||+|+..... ......++...+... -.+.++++.
T Consensus 167 ~aD~~l~v~~P~~Gd~iq~~k-~gi~e---~aDi~VvNKaD~~~~~~-----~~~~~~~~~~al~~~~~~~~~w~p~V~~ 237 (327)
T d2p67a1 167 MVDCFISLQIAGGGDDLQGIK-KGLME---VADLIVINKDDGDNHTN-----VAIARHMYESALHILRRKYDEWQPRVLT 237 (327)
T ss_dssp TCSEEEEEECC------CCCC-HHHHH---HCSEEEECCCCTTCHHH-----HHHHHHHHHHHHHHSCCSBTTBCCEEEE
T ss_pred ccceEEEEecCCCchhhhhhc-hhhhc---cccEEEEEeecccchHH-----HHHHHHHHHHHhhhcccCCCCCcceeEE
Confidence 345678888776554332210 11121 34489999999886432 222233333333211 224578999
Q ss_pred eecCCCCCHHHHHHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
|||++|+|+++|++.|.++.+...
T Consensus 238 ~SA~~g~Gi~eL~~~I~~~~~~l~ 261 (327)
T d2p67a1 238 CSALEKRGIDEIWHAIIDFKTALT 261 (327)
T ss_dssp CBGGGTBSHHHHHHHHHHHHHHHH
T ss_pred EEeeCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998776544
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=99.39 E-value=4.6e-13 Score=116.99 Aligned_cols=128 Identities=21% Similarity=0.281 Sum_probs=75.0
Q ss_pred chHHHHhhcCe----EEcCCCCCcCCCchhhHHHHhCCCe--EEEeecccchhh----hhHHHhhcccC-----------
Q 021750 58 PEPHVAISLEK----LFVPPETEVSIDDSSLSTRILKGSN--IVLSKYARDAQV----AQAEFVKSSVR----------- 116 (308)
Q Consensus 58 ~~~~~~~~~~~----i~v~~gt~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~----~~~~f~~s~~~----------- 116 (308)
..+|+...++. |+|.|++......+..+...+++.. ++++|.+.-... ....|......
T Consensus 5 a~r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~~~~~ 84 (273)
T d1puja_ 5 ARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQG 84 (273)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTT
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHcCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeecccCCC
Confidence 34555555655 9999999977766665666665544 455555432111 11122211000
Q ss_pred -------------------CCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEec
Q 021750 117 -------------------TEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVD 177 (308)
Q Consensus 117 -------------------~~~~~~~~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liD 177 (308)
..........+|+++|.||||||||+|+|.+.+. ..+++.||+|++...+..+..+.++|
T Consensus 85 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKSsliN~L~~~~~-~~~~~~pG~Tr~~~~i~~~~~~~l~D 163 (273)
T d1puja_ 85 LNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNI-AKTGDRPGITTSQQWVKVGKELELLD 163 (273)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCC-C------------CCEEETTTEEEEE
T ss_pred ccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchhhhhhhhhccce-EEECCcccccccceEEECCCCeEEec
Confidence 0011123345899999999999999999999764 68999999999988888888999999
Q ss_pred CCCcccCCC
Q 021750 178 LPGYGYAAA 186 (308)
Q Consensus 178 tpG~~~~~~ 186 (308)
|||+.+...
T Consensus 164 TPGi~~p~~ 172 (273)
T d1puja_ 164 TPGILWPKF 172 (273)
T ss_dssp CCCCCCSCC
T ss_pred CCCccccCC
Confidence 999987543
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.36 E-value=1.7e-12 Score=114.63 Aligned_cols=86 Identities=16% Similarity=0.205 Sum_probs=61.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeC------------------CCEEEecCCCcccC-
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIN------------------DSWYLVDLPGYGYA- 184 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~------------------~~~~liDtpG~~~~- 184 (308)
.+|+|||.||||||||+|++++... +.+..+|++|.+. ..+.+. ..+.++|+||+..+
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~~-~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA 89 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSVL-GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 89 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTT-TSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCC-CCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccccc
Confidence 5999999999999999999998642 3466778777642 223322 14789999999874
Q ss_pred CCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCC
Q 021750 185 AAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASI 219 (308)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~ 219 (308)
+.+.+++.+ |+ .....+|++++|+|+..
T Consensus 90 ~~g~GLGn~---fL----~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 90 STGVGLGNA---FL----SHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CSSSSSCHH---HH----HHHTTCSEEEEEEECCC
T ss_pred ccccccHHH---HH----HHhhccceeEEEEeccC
Confidence 556665543 34 44455677999999864
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.36 E-value=2.1e-12 Score=115.05 Aligned_cols=90 Identities=10% Similarity=0.191 Sum_probs=52.7
Q ss_pred ccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhH-HHHHHHHHhh----hcCCCCEEE
Q 021750 208 LVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENL-NDFQELIQGF----FQTAPPWIM 282 (308)
Q Consensus 208 ~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~ 282 (308)
+|..++|+.+..+...+-.. ...+ ..+-++|+||+|+.+... ..... ..+...+... ..+.++++.
T Consensus 165 ~D~~v~v~~p~~GD~iQ~~k-~gil---E~aDi~vvNKaD~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~p~V~~ 235 (323)
T d2qm8a1 165 TDFFLVLMLPGAGDELQGIK-KGIF---ELADMIAVNKADDGDGER-----RASAAASEYRAALHILTPPSATWTPPVVT 235 (323)
T ss_dssp SSEEEEEECSCC------CC-TTHH---HHCSEEEEECCSTTCCHH-----HHHHHHHHHHHHHTTBCCSBTTBCCCEEE
T ss_pred cceEEEEeeccchhhhhhhh-hhHh---hhhheeeEeccccccchH-----HHHHHHHHHHHHhhcccccccCCCCceEE
Confidence 45678888777654333210 1111 245599999999876432 11111 1222222211 124589999
Q ss_pred eecCCCCCHHHHHHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQLRNYWL 306 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~~~~~ 306 (308)
+||++|+|+++++++|.+..+...
T Consensus 236 ~Sa~~g~Gi~el~~~I~~~~~~~~ 259 (323)
T d2qm8a1 236 ISGLHGKGLDSLWSRIEDHRSKLT 259 (323)
T ss_dssp EBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998876543
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.34 E-value=4.6e-13 Score=120.00 Aligned_cols=113 Identities=19% Similarity=0.177 Sum_probs=77.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCcc-e-------ec------cCCCCceEE--EEEEEe----------------CC-
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRRKKL-A-------LT------SKTPGKTQC--INHFRI----------------ND- 171 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~~~~-~-------~~------~~~~~~t~~--~~~~~~----------------~~- 171 (308)
+.+|+|+|..++|||||+.+|+..... . .+ ....|.|.. ...+.+ +.
T Consensus 17 IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 96 (341)
T d1n0ua2 17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 96 (341)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred CcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence 457999999999999999999742100 0 00 001122221 111211 11
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCC
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRK 250 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~ 250 (308)
.+.++||||+.+ |..+.......+|++++|+|+..+...+...+.+.+...++|+++++||+|...
T Consensus 97 ~inliDtPGh~d-------------F~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~~ 162 (341)
T d1n0ua2 97 LINLIDSPGHVD-------------FSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRAL 162 (341)
T ss_dssp EEEEECCCCCCS-------------SCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred EEEEEcCCCcHH-------------HHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECccccc
Confidence 388999999864 233333444556779999999999999998888888889999999999999764
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.30 E-value=2.5e-12 Score=114.53 Aligned_cols=84 Identities=20% Similarity=0.215 Sum_probs=43.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEE--EE---E----------------------eCCCEEEecCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCIN--HF---R----------------------INDSWYLVDLP 179 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~--~~---~----------------------~~~~~~liDtp 179 (308)
||+|+|.||||||||+|+|++.+ +.+..+|+||.+.+ .. . ....+.++|+|
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~--~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p 79 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred cEeEECCCCCCHHHHHHHHHCCC--CchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence 89999999999999999999975 45667776665321 00 0 00148899999
Q ss_pred CcccC-CCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCC
Q 021750 180 GYGYA-AAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASI 219 (308)
Q Consensus 180 G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~ 219 (308)
|+... +.+.. +..+++.....+|++++|+|+..
T Consensus 80 Gli~ga~~g~~-------~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 80 GLVPGAHEGRG-------LGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp ----------------------CCCSSTTCSEEEEEEETTC
T ss_pred Ccccchhcccc-------hHHHHHHhhccceEEEEEecccc
Confidence 99764 23333 34455566677788999999863
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.26 E-value=1.5e-11 Score=107.41 Aligned_cols=84 Identities=20% Similarity=0.203 Sum_probs=55.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEE--EEEEeC------------------CCEEEecCCCcccC-
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCI--NHFRIN------------------DSWYLVDLPGYGYA- 184 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~--~~~~~~------------------~~~~liDtpG~~~~- 184 (308)
.||+|||.||||||||+|+|++.+ +.+..+|.+|... ..+.+. -.+.++|+||+..+
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~--~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga 80 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred ceEEEECCCCCCHHHHHHHHHCCC--CccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence 489999999999999999999875 3445555555432 122221 23779999999874
Q ss_pred CCchhhhhchHHHHHHHHHhcCCccEEEEEEeCC
Q 021750 185 AAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDAS 218 (308)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~ 218 (308)
+.+.+++.+ |+++ ...+|++++|+|+.
T Consensus 81 ~~g~Glg~~---FL~~----ir~~d~LihVVr~f 107 (278)
T d1jala1 81 SKGEGLGNK---FLAN----IRETDAIGHVVRCF 107 (278)
T ss_dssp HHHGGGTCC---HHHH----HHTCSEEEEEEECS
T ss_pred ccCCCccHH---HHHH----HHhccceEEEeecc
Confidence 455666665 4444 33456699999874
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.14 E-value=3.8e-10 Score=99.00 Aligned_cols=126 Identities=21% Similarity=0.233 Sum_probs=79.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCce--EEEE------------------------------------
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKT--QCIN------------------------------------ 165 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t--~~~~------------------------------------ 165 (308)
..|+|+++|..++|||||||+|++.+..+ +...+.|. ..+.
T Consensus 25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP-~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (299)
T d2akab1 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLP-RGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSC-CCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHhCCCcCC-CCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHh
Confidence 45789999999999999999999976422 11111110 0000
Q ss_pred --------------EEEe--CCCEEEecCCCcccCCCch---hhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhH-
Q 021750 166 --------------HFRI--NDSWYLVDLPGYGYAAAPR---ELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPID- 225 (308)
Q Consensus 166 --------------~~~~--~~~~~liDtpG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~- 225 (308)
.+.. ...+.++||||+....... ........+...|+..... ++++|.++........
T Consensus 104 ~~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~--~il~v~~a~~~~~~~~~ 181 (299)
T d2akab1 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENC--LILAVSPANSDLANSDA 181 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTE--EEEEEEESSSCGGGCHH
T ss_pred hCCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccc--eeeeecccccchhhhHH
Confidence 0011 1258899999997643221 1112334566677655543 4777888876655444
Q ss_pred HHHHHHhccCCCCEEEEeecCCCCCcc
Q 021750 226 LEYASWLGQNQIPMTLVFTKCDKRKKK 252 (308)
Q Consensus 226 ~~l~~~~~~~~~pvivV~NK~Dl~~~~ 252 (308)
..+.+.+.....++++|+||+|+....
T Consensus 182 ~~~~~~~~~~~~r~i~Vltk~D~~~~~ 208 (299)
T d2akab1 182 LKIAKEVDPQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHHHHHCTTCSSEEEEEECGGGSCTT
T ss_pred HHHHHHhCcCCCceeeEEeccccccch
Confidence 355666666778999999999988653
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.13 E-value=2.4e-10 Score=100.81 Aligned_cols=79 Identities=19% Similarity=0.227 Sum_probs=50.1
Q ss_pred CEEEecCCCcccCCCc---hhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCC-ChhHHHHHHHhccCCCCEEEEeecCC
Q 021750 172 SWYLVDLPGYGYAAAP---RELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPA-KPIDLEYASWLGQNQIPMTLVFTKCD 247 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~-~~~~~~l~~~~~~~~~pvivV~NK~D 247 (308)
.+.++||||+...... .........+...|+...+.+ ++++.++.... ......+.+.+.....++++|+||+|
T Consensus 132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~--il~v~~~~~~~~~~~~~~~~~~~~~~~~r~i~Vitk~D 209 (306)
T d1jwyb_ 132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAI--IVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (306)
T ss_dssp SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEE--EEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCce--eEEeecccccccccHHHHHHHHhCcCCCeEEEEEeccc
Confidence 5889999999753221 122224456777787766553 66667776543 33344566666666789999999999
Q ss_pred CCCcc
Q 021750 248 KRKKK 252 (308)
Q Consensus 248 l~~~~ 252 (308)
.....
T Consensus 210 ~~~~~ 214 (306)
T d1jwyb_ 210 LMDKG 214 (306)
T ss_dssp SSCSS
T ss_pred cccch
Confidence 87543
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.80 E-value=7.3e-09 Score=86.64 Aligned_cols=57 Identities=33% Similarity=0.414 Sum_probs=40.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcce--eccC----CCCceEEEEEEEeCCCEEEecCCCccc
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLA--LTSK----TPGKTQCINHFRINDSWYLVDLPGYGY 183 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~--~~~~----~~~~t~~~~~~~~~~~~~liDtpG~~~ 183 (308)
..+++|.+|||||||+|+|.+..... .++. -..||+....+.+.+...++||||+.+
T Consensus 97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg~iiDTPG~r~ 159 (225)
T d1u0la2 97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN 159 (225)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTT
T ss_pred eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCcEEEeCCcccc
Confidence 78999999999999999999864221 2222 234666667777777788999999965
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.60 E-value=3.7e-08 Score=82.51 Aligned_cols=71 Identities=25% Similarity=0.340 Sum_probs=41.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcce--eccCCC----CceEEEEEEEeCCCEEEecCCCcccCC----CchhhhhchHH
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKLA--LTSKTP----GKTQCINHFRINDSWYLVDLPGYGYAA----APRELRTDWDK 196 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~~--~~~~~~----~~t~~~~~~~~~~~~~liDtpG~~~~~----~~~~~~~~~~~ 196 (308)
..+++|.+|||||||||+|.+..... .++... .||+....+..++ -.++||||+.+-. ...++..-|..
T Consensus 99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~g-g~iiDTPG~r~~~l~~~~~~~l~~~F~e 177 (231)
T d1t9ha2 99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSG-GLVADTPGFSSLEFTDIEEEELGYTFPD 177 (231)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETT-EEEESSCSCSSCCCTTCCHHHHGGGSHH
T ss_pred eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCC-CEEEECCccccccccccCcccchhhhhh
Confidence 67899999999999999999864221 122221 2444444455554 4688999996522 23345555655
Q ss_pred HH
Q 021750 197 FT 198 (308)
Q Consensus 197 ~~ 198 (308)
+.
T Consensus 178 i~ 179 (231)
T d1t9ha2 178 IR 179 (231)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.57 E-value=1.8e-07 Score=80.62 Aligned_cols=89 Identities=19% Similarity=0.220 Sum_probs=70.3
Q ss_pred HhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEE
Q 021750 203 LNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIM 282 (308)
Q Consensus 203 ~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (308)
.....+|+|++|+|+..+.+..+..+.+++. ++|+|+|+||+|+.+. +..+.+.+.+... ...+++
T Consensus 11 ~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~--~Kp~IlVlNK~DLv~~---------~~~~~w~~~f~~~---~~~~i~ 76 (273)
T d1puja_ 11 EKLKLIDIVYELVDARIPMSSRNPMIEDILK--NKPRIMLLNKADKADA---------AVTQQWKEHFENQ---GIRSLS 76 (273)
T ss_dssp HHGGGCSEEEEEEETTSTTTTSCHHHHHHCS--SSCEEEEEECGGGSCH---------HHHHHHHHHHHTT---TCCEEE
T ss_pred HHHHhCCEEEEEEECCCCCCCCCHHHHHHHc--CCCeEEEEECccCCch---------HHHHHHHHHHHhc---CCccce
Confidence 3445567899999999999988887778775 7999999999999853 3456666666533 467999
Q ss_pred eecCCCCCHHHHHHHHHHHHHHH
Q 021750 283 TSSVTNQGRDEILLHMAQLRNYW 305 (308)
Q Consensus 283 vSA~~g~gi~el~~~i~~~~~~~ 305 (308)
+||.++.|+.++...+.+.+.+.
T Consensus 77 isa~~~~~~~~~~~~~~~~l~~~ 99 (273)
T d1puja_ 77 INSVNGQGLNQIVPASKEILQEK 99 (273)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHH
T ss_pred eecccCCCccccchhhhhhhhhh
Confidence 99999999999888887776543
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.17 E-value=1.6e-05 Score=65.96 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+|-.+|.|.-|+|||||+++++..
T Consensus 3 iPv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 3 IAVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred CCEEEEeeCCCCCHHHHHHHHHhc
Confidence 456789999999999999999874
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.16 E-value=5.1e-06 Score=68.41 Aligned_cols=100 Identities=24% Similarity=0.213 Sum_probs=52.9
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCCCc
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKRKK 251 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~~~ 251 (308)
.++++||+|............+ +..+..... .+-+++|+|++......+ .........+. --+++||.|....
T Consensus 96 d~IlIDTaGr~~~~~~~~~~~e----l~~~~~~~~-~~~~~LVl~a~~~~~~~~-~~~~~~~~~~~-~~lI~TKlDet~~ 168 (211)
T d1j8yf2 96 EIIIVDTAGRHGYGEEAALLEE----MKNIYEAIK-PDEVTLVIDASIGQKAYD-LASKFNQASKI-GTIIITKMDGTAK 168 (211)
T ss_dssp SEEEEECCCSCCTTCHHHHHHH----HHHHHHHHC-CSEEEEEEEGGGGGGHHH-HHHHHHHHCTT-EEEEEECTTSCSC
T ss_pred ceEEEecCCcCccchhhHHHHH----HHHHHhhcC-CceEEEEEecccCcchHH-HHhhhhcccCc-ceEEEecccCCCc
Confidence 7999999996321111110011 122222222 234899999987654433 22333333333 3467999997642
Q ss_pred ccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHH
Q 021750 252 KKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el 294 (308)
.-.+..... ....|+.+++ +|+++++|
T Consensus 169 -----------~G~~l~~~~---~~~lPi~~it--~Gq~v~DL 195 (211)
T d1j8yf2 169 -----------GGGALSAVA---ATGATIKFIG--TGEKIDEL 195 (211)
T ss_dssp -----------HHHHHHHHH---TTTCCEEEEE--CSSSTTCE
T ss_pred -----------ccHHHHHHH---HHCcCEEEEe--CCCCcccC
Confidence 223333332 2357888888 48777653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.03 E-value=1.2e-05 Score=66.59 Aligned_cols=83 Identities=19% Similarity=0.318 Sum_probs=56.0
Q ss_pred CccEEEEEEeCCCCCChhH-H-HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEee
Q 021750 207 TLVSVFLLIDASIPAKPID-L-EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTS 284 (308)
Q Consensus 207 ~~~~vl~viD~~~~~~~~~-~-~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS 284 (308)
.+|.+++|+.+..|..... . .++-.....+++.+||+||+||.+.. ..+.+.+....+ ....+++.+|
T Consensus 10 NiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~~---------~~~~~~~~~~~~-~~~~~v~~vS 79 (225)
T d1u0la2 10 NVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDED---------DLRKVRELEEIY-SGLYPIVKTS 79 (225)
T ss_dssp SCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHH---------HHHHHHHHHHHH-TTTSCEEECC
T ss_pred cCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCcccCCHH---------HHHHHHHhhccc-ccceeEEEec
Confidence 3566888888776543222 1 23334456899999999999998532 244444333322 2347899999
Q ss_pred cCCCCCHHHHHHHHH
Q 021750 285 SVTNQGRDEILLHMA 299 (308)
Q Consensus 285 A~~g~gi~el~~~i~ 299 (308)
|+++.|+++|.+++.
T Consensus 80 a~~~~g~~~L~~~l~ 94 (225)
T d1u0la2 80 AKTGMGIEELKEYLK 94 (225)
T ss_dssp TTTCTTHHHHHHHHS
T ss_pred cccchhHhhHHHHhc
Confidence 999999999988763
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.95 E-value=2.7e-05 Score=64.08 Aligned_cols=102 Identities=13% Similarity=0.137 Sum_probs=51.1
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHh--cCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCC
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLN--RSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~ 249 (308)
.++++||+|... ...++..++..+.+. ... ....+-+++|+|++....... ++.......+ +-=++++|.|..
T Consensus 95 d~ilIDTaGr~~--~d~~~~~el~~~~~~-~~~~~~~~p~~~~LVl~a~~~~~~~~-~~~~~~~~~~-~~~lI~TKlDe~ 169 (213)
T d1vmaa2 95 DVVIIDTAGRLH--TKKNLMEELRKVHRV-VKKKIPDAPHETLLVIDATTGQNGLV-QAKIFKEAVN-VTGIILTKLDGT 169 (213)
T ss_dssp SEEEEEECCCCS--CHHHHHHHHHHHHHH-GGGTCTTCCSEEEEEEEGGGHHHHHH-HHHHHHHHSC-CCEEEEECGGGC
T ss_pred CEEEEecccccc--chHHHHHHHHHHHhh-hhhccccccceeEEeeccccCcchhh-hhhhhccccC-CceEEEecccCC
Confidence 689999999542 222211222222211 110 011245899999986533222 2233333322 345688999975
Q ss_pred CcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHH
Q 021750 250 KKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el 294 (308)
..-. .+-.+.... ..|+.+++ +|++++++
T Consensus 170 ~~~G--------~~l~~~~~~------~~Pi~~i~--~Gq~v~Dl 198 (213)
T d1vmaa2 170 AKGG--------ITLAIAREL------GIPIKFIG--VGEKAEDL 198 (213)
T ss_dssp SCTT--------HHHHHHHHH------CCCEEEEE--CSSSGGGE
T ss_pred Cccc--------HHHHHHHHH------CCCEEEEe--CCCCcccC
Confidence 4221 122222222 37888887 47777553
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.88 E-value=5.8e-05 Score=61.85 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=51.8
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcC--CccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCCC
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRS--TLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDKR 249 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl~ 249 (308)
.++++||+|... ....+-.++..+.+. ..... ..+-+++|+|++.+..... +........+ +-=++++|.|-.
T Consensus 93 d~ilIDTaGr~~--~d~~~~~el~~l~~~-~~~~~~~~p~~~~LVl~a~~~~~~~~-~~~~~~~~~~-~~~lIlTKlDe~ 167 (211)
T d2qy9a2 93 DVLIADTAGRLQ--NKSHLMEELKKIVRV-MKKLDVEAPHEVMLTIDASTGQNAVS-QAKLFHEAVG-LTGITLTKLDGT 167 (211)
T ss_dssp SEEEECCCCCGG--GHHHHHHHHHHHHHH-HTTTCTTCCSEEEEEEEGGGTHHHHH-HHHHHHHHSC-CCEEEEECCTTC
T ss_pred CEEEeccCCCcc--ccHHHHHHHHHHHHH-HhhhcccCcceeeeehhcccCcchHH-HHhhhhhccC-CceEEEeecCCC
Confidence 689999999532 111211122222211 11111 1235899999986543333 2333333323 345678999975
Q ss_pred CcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHH
Q 021750 250 KKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el 294 (308)
..-. .+-.+.... ..|+.+++ +|++++++
T Consensus 168 ~~~G--------~~l~~~~~~------~~Pi~~i~--~Gq~v~Dl 196 (211)
T d2qy9a2 168 AKGG--------VIFSVADQF------GIPIRYIG--VGERIEDL 196 (211)
T ss_dssp TTTT--------HHHHHHHHH------CCCEEEEE--CSSSGGGE
T ss_pred CCcc--------HHHHHHHHH------CCCEEEEe--CCCCcccC
Confidence 4321 122222222 37888888 57777553
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.86 E-value=4.1e-06 Score=69.77 Aligned_cols=84 Identities=19% Similarity=0.271 Sum_probs=56.1
Q ss_pred CccEEEEEEeCCCCCChhH-H-HHHHHhccCCCCEEEEeecCCCCCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEee
Q 021750 207 TLVSVFLLIDASIPAKPID-L-EYASWLGQNQIPMTLVFTKCDKRKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTS 284 (308)
Q Consensus 207 ~~~~vl~viD~~~~~~~~~-~-~l~~~~~~~~~pvivV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS 284 (308)
.+|.+++|+.+.++..... . .++-.....+++.+||+||+||.+..+ ..+.++.+.+.+.. .+.+++.+|
T Consensus 10 NiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~-----~~~~~~~~~~~y~~---~g~~v~~~S 81 (231)
T d1t9ha2 10 NVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQD-----TEDTIQAYAEDYRN---IGYDVYLTS 81 (231)
T ss_dssp CCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHH-----HHHHHHHHHHHHHH---HTCCEEECC
T ss_pred ccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccccccHH-----HHHHHHHHHHHHhh---ccccceeee
Confidence 3566888888876543222 1 233344568899999999999986432 22334444443332 257999999
Q ss_pred cCCCCCHHHHHHHH
Q 021750 285 SVTNQGRDEILLHM 298 (308)
Q Consensus 285 A~~g~gi~el~~~i 298 (308)
|+++.|+++|.+++
T Consensus 82 a~~~~gl~~L~~~l 95 (231)
T d1t9ha2 82 SKDQDSLADIIPHF 95 (231)
T ss_dssp HHHHTTCTTTGGGG
T ss_pred cCChhHHHHHHHhh
Confidence 99999999987765
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.85 E-value=0.0001 Score=60.22 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=52.4
Q ss_pred CCEEEecCCCcccCCCchhhhhchHHHHHHHHHhc--CCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCC
Q 021750 171 DSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNR--STLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDK 248 (308)
Q Consensus 171 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl 248 (308)
..++++||+|..... .++-.++..+.+. .... ...+-+++|+|++....... ++.......+. -=++++|.|.
T Consensus 89 ~d~ilIDTaGr~~~d--~~l~~el~~~~~~-~~~~~~~~p~~~~LVl~a~~~~~~~~-~~~~~~~~~~~-~~lI~TKlDe 163 (207)
T d1okkd2 89 YDLLFVDTAGRLHTK--HNLMEELKKVKRA-IAKADPEEPKEVWLVLDAVTGQNGLE-QAKKFHEAVGL-TGVIVTKLDG 163 (207)
T ss_dssp CSEEEECCCCCCTTC--HHHHHHHHHHHHH-HHHHCTTCCSEEEEEEETTBCTHHHH-HHHHHHHHHCC-SEEEEECTTS
T ss_pred CCEEEcCccccchhh--HHHHHHHHHHHHH-hhhcccCCCceEEEEeecccCchHHH-HHHHhhhccCC-ceEEEeccCC
Confidence 368999999964321 2211122222211 1111 12234899999997754433 23333332222 3568899997
Q ss_pred CCcccCCCCCchhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHH
Q 021750 249 RKKKKNGGKRPEENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEI 294 (308)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el 294 (308)
...-. .+-.+.... ..|+.+++. |++.+++
T Consensus 164 t~~~G--------~~l~~~~~~------~~Pi~~i~~--Gq~p~Dl 193 (207)
T d1okkd2 164 TAKGG--------VLIPIVRTL------KVPIKFVGV--GEGPDDL 193 (207)
T ss_dssp SCCCT--------THHHHHHHH------CCCEEEEEC--SSSTTCE
T ss_pred CCCcc--------HHHHHHHHH------CCCEEEEeC--CCChHhC
Confidence 64321 122333333 378888874 6666544
|
| >d1lnza1 b.117.1.1 (A:1-157) Obg GTP-binding protein N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Obg-fold superfamily: Obg GTP-binding protein N-terminal domain family: Obg GTP-binding protein N-terminal domain domain: Obg GTP-binding protein N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.71 E-value=3.4e-06 Score=66.06 Aligned_cols=58 Identities=21% Similarity=0.350 Sum_probs=48.9
Q ss_pred Ce-EEcCCCCCcCCCchh--hHHHHhCCCeEEEeecccchhhhhHHHhhcccCCCCCCCCCC
Q 021750 67 EK-LFVPPETEVSIDDSS--LSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDGL 125 (308)
Q Consensus 67 ~~-i~v~~gt~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~~ 125 (308)
|. |.||.||.+.+.++. +.+...+++++++|+|+.++ .+|..|.++.+++|..++.+.
T Consensus 84 Dlii~VP~GT~V~~~~~~~~i~dl~~~g~~~lvakGG~GG-~GN~~f~ss~n~~P~~~~~G~ 144 (157)
T d1lnza1 84 DMVIKVPPGTVVTDDDTKQVIADLTEHGQRAVIARGGRGG-RGNSRFATPANPAPQLSENGE 144 (157)
T ss_dssp CEEEEECTTEEEEETTTCCEEEEECSTTCEEEEECCCCCC-CCGGGSCBTTBSSCCCCCCCC
T ss_pred cEEEEeccceEEecCCCcEEEEeeccCCceEEEEecCCCC-CcccccccccCCCCccccCCC
Confidence 45 999999999987754 44566778999999999886 999999999999999877664
|
| >d1udxa1 b.117.1.1 (A:1-156) Obg GTP-binding protein N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Obg-fold superfamily: Obg GTP-binding protein N-terminal domain family: Obg GTP-binding protein N-terminal domain domain: Obg GTP-binding protein N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=97.71 E-value=2.1e-06 Score=67.16 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=46.5
Q ss_pred EEcCCCCCcCCCchh--hHHHHhCCCeEEEeecccchhhhhHHHhhcccCCCCCCCCCC
Q 021750 69 LFVPPETEVSIDDSS--LSTRILKGSNIVLSKYARDAQVAQAEFVKSSVRTEDCPSDGL 125 (308)
Q Consensus 69 i~v~~gt~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~~ 125 (308)
|.||.||.+++.++. +.+....++++++|+|+.++ .+|.+|.++.+++|..++.+.
T Consensus 86 I~VP~GT~V~~~~~~~~i~dl~~~g~~~lva~GG~GG-~GN~~f~ss~n~~P~~~~~G~ 143 (156)
T d1udxa1 86 IEVPRGTRVFDADTGELLADLTEEGQTVLVARGGAGG-RGNMHFVSPTRQAPRFAEAGE 143 (156)
T ss_dssp EEECSSEEEEETTTCCEEEEECSTTCEEEEECCCCCC-CCGGGGCCSSCSSCCEEECCC
T ss_pred EEecCCCEEEeCCCCEEEEEeccCCcEEEEecCCCCC-CcccccccccCCCCccccCCC
Confidence 999999999986654 44566778899999999986 999999999999988765443
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.59 E-value=0.00013 Score=59.51 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 021750 128 FALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~ 147 (308)
|+++|++||||||.+-.|..
T Consensus 13 i~lvGp~GvGKTTTiaKLA~ 32 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLAL 32 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999988864
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.47 E-value=3.4e-06 Score=68.65 Aligned_cols=38 Identities=16% Similarity=0.092 Sum_probs=29.4
Q ss_pred EEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCC
Q 021750 211 VFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDK 248 (308)
Q Consensus 211 vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl 248 (308)
.+.++|+..........+...+...+.+++++.++++.
T Consensus 87 ~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 124 (213)
T d1bifa1 87 HVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVD 124 (213)
T ss_dssp SEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCC
T ss_pred CEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccH
Confidence 46789998877777667777777778888998888863
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.20 E-value=7.9e-05 Score=58.53 Aligned_cols=22 Identities=32% Similarity=0.700 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
||+|+|++|+|||||++.+++.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHhc
Confidence 8999999999999999999973
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.12 E-value=0.00012 Score=56.83 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
|-|+|+|.+|||||||+++|..
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5699999999999999999986
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.04 E-value=0.00016 Score=56.13 Aligned_cols=24 Identities=38% Similarity=0.652 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+|.|||||||+.+.|...
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.00 E-value=0.0015 Score=51.32 Aligned_cols=91 Identities=15% Similarity=0.139 Sum_probs=51.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
...-|+++|.|||||||+..++....... .+. .|.-+ . ........+.++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~~~~~~-------------~i~-------~D~~~--~-------~~~~~~~~~~~l~ 63 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLVSAGYV-------------HVN-------RDTLG--S-------WQRCVSSCQAALR 63 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTGGGTCE-------------EEE-------HHHHC--S-------HHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCCE-------------EEc-------hHHHH--H-------HHHHHHHHHHHHH
Confidence 34468999999999999999996532110 010 11100 0 0122223344443
Q ss_pred hcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEEEEeecCCC
Q 021750 204 NRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMTLVFTKCDK 248 (308)
Q Consensus 204 ~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvivV~NK~Dl 248 (308)
... .+|+|.+.........+..++...+.++.+|.-.+|+
T Consensus 64 ~g~-----~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~ 103 (172)
T d1yj5a2 64 QGK-----RVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATI 103 (172)
T ss_dssp TTC-----CEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCH
T ss_pred CCC-----CceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCCH
Confidence 332 3556887765555556666666667777777655554
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.94 E-value=0.00016 Score=56.64 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+|+|+|.+|+|||||+++|...
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999874
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.90 E-value=0.00017 Score=57.40 Aligned_cols=21 Identities=29% Similarity=0.667 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|+|+|++|+||+||+++|+..
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999864
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=0.00072 Score=57.17 Aligned_cols=82 Identities=23% Similarity=0.258 Sum_probs=43.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccCCCCceEEEEEEEeCCCEEEecCCCcccCCCchhhhhchHHHHHHHHH
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGYGYAAAPRELRTDWDKFTKDYFL 203 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 203 (308)
...++++||+||||||+++..|...-. ....|..- .+.+++-+|+..+..+....+ .|...+...+.
T Consensus 38 ~k~n~lLVG~~GvGKTalv~~la~ri~---~~~vp~~l-------~~~~i~~l~~~~liag~~~~g---~~e~r~~~i~~ 104 (268)
T d1r6bx2 38 RKNNPLLVGESGVGKTAIAEGLAWRIV---QGDVPEVM-------ADCTIYSLDIGSLLAGTKYRG---DFEKRFKALLK 104 (268)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHH---HTCSCGGG-------TTCEEEECCCC---CCCCCSS---CHHHHHHHHHH
T ss_pred ccCCcEEECCCCCcHHHHHHHHHHHHH---hCCccccc-------ccceeEEeeechHhccCccch---hHHHHHHHHHH
Confidence 334899999999999999999987411 11111110 012345566655544332222 45545554444
Q ss_pred hcCCccEEEEEEeCC
Q 021750 204 NRSTLVSVFLLIDAS 218 (308)
Q Consensus 204 ~~~~~~~vl~viD~~ 218 (308)
......-+++++|--
T Consensus 105 ~~~~~~~iIlfiDei 119 (268)
T d1r6bx2 105 QLEQDTNSILFIDEI 119 (268)
T ss_dssp HHSSSSCEEEEETTT
T ss_pred HhhccCCceEEecch
Confidence 433333367777753
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.83 E-value=0.0018 Score=54.95 Aligned_cols=60 Identities=28% Similarity=0.280 Sum_probs=38.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCCcceeccC-CCCceEEEEEEE--e-C---CCEEEecCCCccc
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRRKKLALTSK-TPGKTQCINHFR--I-N---DSWYLVDLPGYGY 183 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~~~~~~~~~-~~~~t~~~~~~~--~-~---~~~~liDtpG~~~ 183 (308)
...-|+++|+.++|||+|+|.|++..+.-.+.. ...+|..+..+. . + ..+.++||.|+..
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~ 97 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 97 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence 355799999999999999999998653111111 112333332221 1 1 1588999999864
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.67 E-value=0.00039 Score=54.03 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 021750 128 FALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~ 147 (308)
|+|+|.+|||||||+++|+.
T Consensus 4 i~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 57999999999999999986
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.63 E-value=0.00048 Score=53.57 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
|+|+|+|.+||||||+.+.|...
T Consensus 2 p~IvliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999988753
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.60 E-value=0.00068 Score=52.52 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..+|+|.|.|||||||+.+.|...
T Consensus 5 ~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHH
Confidence 348999999999999999999864
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.53 E-value=0.00061 Score=51.71 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|++.|.||||||||+++|...
T Consensus 5 Iii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 678999999999999998753
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.52 E-value=0.00023 Score=56.82 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|+|+|++||||+||+++|+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999874
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.00086 Score=53.84 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
...++++||+||||||+++..|...
T Consensus 42 ~k~n~lLvG~pGVGKTalv~~LA~r 66 (195)
T d1jbka_ 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCeEEEecCCcccHHHHHHHHHH
Confidence 3448999999999999999999863
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.40 E-value=0.0011 Score=52.85 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=22.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
....+|+|+|+|||||||+...|...
T Consensus 4 ~r~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 4 ARLLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHH
Confidence 34569999999999999999999874
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.38 E-value=0.00079 Score=51.79 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|+|.|.|||||||+.++|...
T Consensus 5 I~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999864
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.00036 Score=56.76 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|+|+|++|||||||++.|+..
T Consensus 5 ivi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 5 YIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999874
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.00085 Score=55.85 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+|+|+|++|+|||||++.|.+-
T Consensus 31 ~vaIvG~sGsGKSTLl~ll~gl 52 (241)
T d2pmka1 31 VIGIVGRSGSGKSTLTKLIQRF 52 (241)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999985
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.35 E-value=0.00034 Score=55.40 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|+|+|++|||||||++.|...
T Consensus 5 ivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 5 VVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999864
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.26 E-value=0.0011 Score=51.81 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+|+|+|.|||||||+...|...
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998764
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.0011 Score=50.26 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|+|+|.+||||||+...|...
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999764
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.21 E-value=0.0017 Score=51.71 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=22.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+..+-|+|+|+|||||||+...|...
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999999874
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.21 E-value=0.0014 Score=52.06 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+|+|+|||||||+...|...
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999864
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=96.20 E-value=0.0011 Score=55.55 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|++-
T Consensus 43 ~iaivG~sGsGKSTLl~ll~gl 64 (253)
T d3b60a1 43 TVALVGRSGSGKSTIASLITRF 64 (253)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCChHHHHHHHHhcc
Confidence 7999999999999999999884
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.19 E-value=0.0014 Score=51.90 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+|+|+|+||+||||+...|...
T Consensus 4 m~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999764
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=96.17 E-value=0.0012 Score=54.91 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+-
T Consensus 30 ~vaivG~sGsGKSTLl~ll~gl 51 (242)
T d1mv5a_ 30 IIAFAGPSGGGKSTIFSLLERF 51 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999884
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.16 E-value=0.0012 Score=54.48 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|++|||||||++.+.+-
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~gl 54 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNIIGCL 54 (230)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCcchhhHhccCC
Confidence 6999999999999999998874
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.16 E-value=0.0012 Score=51.20 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|.|.|++|+|||||+..+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999999986
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.0013 Score=55.06 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|.+-
T Consensus 42 ~vaivG~sGsGKSTLl~li~gl 63 (251)
T d1jj7a_ 42 VTALVGPNGSGKSTVAALLQNL 63 (251)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 7999999999999999999984
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.14 E-value=0.0012 Score=53.20 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|+.|+|||||++.+++-
T Consensus 29 i~~l~G~NGsGKSTLl~~i~gl 50 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTISTY 50 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcc
Confidence 5899999999999999999985
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.0013 Score=54.26 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-++|+|++|||||||++.+.+-.
T Consensus 28 i~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 69999999999999999998853
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.13 E-value=0.0017 Score=51.30 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+|+|+|+|||||||+...|...
T Consensus 4 ~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 4 VRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999863
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.09 E-value=0.0015 Score=51.29 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+|+|+|.|||||||+...|...
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999874
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.05 E-value=0.0015 Score=55.53 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.|++-
T Consensus 64 ~vaivG~nGsGKSTLl~~i~Gl 85 (281)
T d1r0wa_ 64 MLAITGSTGSGKTSLLMLILGE 85 (281)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 7999999999999999999984
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.02 E-value=0.0016 Score=53.97 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-++|+|++|||||||++.+.+-.
T Consensus 34 ~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 58999999999999999999853
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.02 E-value=0.0017 Score=50.88 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+|+|+|+||+||||+...|...
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999864
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.01 E-value=0.0016 Score=50.59 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-|+|.|.+||||||+++.|..
T Consensus 3 iI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378889999999999999965
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.95 E-value=0.0019 Score=49.82 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|+|.|.|||||||+.+.|...
T Consensus 7 I~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 7 LLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEECTTSCHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 778999999999999999764
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.002 Score=50.47 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+|+|+|+|||||||+...|...
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999764
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.92 E-value=0.0012 Score=52.70 Aligned_cols=21 Identities=43% Similarity=0.635 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|+|+|++|||||||+++|...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999763
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.91 E-value=0.0019 Score=53.46 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|++|||||||++.+.+-
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl 47 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5789999999999999999985
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.89 E-value=0.002 Score=49.75 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+|+|+|.|||||||+...|...
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=95.89 E-value=0.002 Score=53.42 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-++|+|++|||||||++.+.+-.
T Consensus 31 ~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 69999999999999999999853
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=95.89 E-value=0.0018 Score=53.65 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|++|||||||++.+.+-
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~Gl 54 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVNLL 54 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999999885
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.002 Score=49.56 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
=++|+|.|||||||+.+.|...
T Consensus 8 iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 8 IYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3677999999999999999763
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.85 E-value=0.0026 Score=49.95 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=21.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhc
Q 021750 123 DGLPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 123 ~~~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
.+.+-|+|.|.+|||||||.++|..
T Consensus 20 ~~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3555799999999999999999975
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=95.81 E-value=0.0014 Score=53.95 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|++|||||||++.+.+-
T Consensus 28 ~~~liGpsGaGKSTll~~l~Gl 49 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIAGF 49 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5999999999999999999985
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.80 E-value=0.0024 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+|+|+|+|||||||+...|...
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999764
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.80 E-value=0.0022 Score=49.37 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
|+|.|.||+||||+.+.|...
T Consensus 6 I~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 6 IILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 666699999999999999874
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.80 E-value=0.0024 Score=50.52 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+.|+|+|+|||||||....|...
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.79 E-value=0.0024 Score=49.23 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-|.|+|.|||||||+...|..
T Consensus 8 ~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 8 TIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998875
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=95.77 E-value=0.0017 Score=53.61 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|+.|+|||||++.+.+-
T Consensus 27 i~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 27 ILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp EEECBCCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6999999999999999999984
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=95.76 E-value=0.0023 Score=53.09 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|+.|+|||||++.+++-
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl 55 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=95.74 E-value=0.0015 Score=54.73 Aligned_cols=22 Identities=45% Similarity=0.554 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+++|+|++|+|||||++.|.+-
T Consensus 46 ~vaivG~sGsGKSTLl~ll~gl 67 (255)
T d2hyda1 46 TVAFVGMSGGGKSTLINLIPRF 67 (255)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCCcHHHHHHHHHhc
Confidence 8999999999999999999874
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=95.71 E-value=0.0047 Score=54.78 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=20.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
+..+++|||.||||||+++..|..
T Consensus 42 ~k~n~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHH
T ss_pred CCCCCeEECCCCCCHHHHHHHHHH
Confidence 344789999999999999987765
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=95.63 E-value=0.0027 Score=52.54 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-++|+|+.|+|||||++.+.+-.
T Consensus 30 i~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 30 IFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999853
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=95.58 E-value=0.0029 Score=53.03 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|++|+|||||++.+.+-
T Consensus 30 i~~iiG~sGsGKSTLl~~i~Gl 51 (258)
T d1b0ua_ 30 VISIIGSSGSGKSTFLRCINFL 51 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 6999999999999999999885
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.50 E-value=0.0032 Score=52.62 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-++|+|+.|+|||||++.+++-
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl 53 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGF 53 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHHCC
Confidence 5899999999999999999985
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.42 E-value=0.0043 Score=50.77 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+.+.+.|+||+||||+++.+.+.
T Consensus 35 ~~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 35 LEHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999874
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.41 E-value=0.0039 Score=48.31 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999975
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.41 E-value=0.0019 Score=53.57 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.++|+|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~sGsGKSTll~~i~gl 54 (242)
T d1oxxk2 33 RFGILGPSGAGKTTFMRIIAGL 54 (242)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 6999999999999999999985
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.35 E-value=0.0033 Score=52.12 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|.|.|+||+|||||+.+|.+.
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.33 E-value=0.0039 Score=48.53 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 021750 128 FALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~ 147 (308)
|+|.|.+||||||+++.|..
T Consensus 4 ivi~G~~GsGKTT~~~~La~ 23 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45679999999999999975
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.17 E-value=0.0049 Score=48.79 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|.|+|+|||||||+..+|...
T Consensus 10 iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 10 IIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.13 E-value=0.0026 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|.|+|.|||||||+.+.|...
T Consensus 21 vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 21 TVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp EEEEESSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999999753
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.07 E-value=0.0067 Score=49.46 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+.+.|.|+||+||||+++.|...
T Consensus 36 ~~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHhc
Confidence 46899999999999999999864
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.90 E-value=0.007 Score=48.50 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
+-|+|.|.+|||||||.+.|..
T Consensus 3 ~iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 3 FLIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.63 E-value=0.013 Score=47.96 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..+.+.|.|+||+||||++.++++.
T Consensus 51 ~~~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 51 VFRAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999974
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.57 E-value=0.011 Score=48.44 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
...+.|.|+||+|||++++.+...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999863
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.45 E-value=0.0093 Score=51.49 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+|++.|.+|+|||||+++|++.
T Consensus 168 nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 168 NVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEeeccccchHHHHHHhhh
Confidence 6999999999999999999873
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.35 E-value=0.013 Score=47.45 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+.+.|.|+||+||||+++.+...
T Consensus 46 ~~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999999874
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.12 E-value=0.012 Score=48.66 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|.+.|+||+|||+|++++.+.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhc
Confidence 36999999999999999999863
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.11 E-value=0.012 Score=48.26 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-|+|.|++|+|||||++.++.
T Consensus 31 ~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 31 ITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 588999999999999999875
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.08 E-value=0.012 Score=50.40 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|.++|+||||||.|.+++.+.
T Consensus 51 ~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 51 NILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhhc
Confidence 5899999999999999999863
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.02 E-value=0.017 Score=46.21 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+|-|+|||||||+...|...
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46888899999999999999874
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.99 E-value=0.011 Score=46.59 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|-|..||||||+++.|...
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999764
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.88 E-value=0.017 Score=45.30 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
+.-|+|.|.+||||||+.+.|..
T Consensus 3 p~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 3 PIIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998865
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.85 E-value=0.016 Score=46.15 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
|-|+|.|+|||||||+...|...
T Consensus 4 piI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35788899999999999999875
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.76 E-value=0.026 Score=46.82 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..+.+.|+||+|||++++++...
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHH
Confidence 46999999999999999999864
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.72 E-value=0.022 Score=45.94 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+.+.|.|++|+||||++..+++.
T Consensus 34 ~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 34 PHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChHHHHHHHHHH
Confidence 45899999999999999999864
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.62 E-value=0.022 Score=45.89 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+.+.|.|++|+||||+++.+...
T Consensus 37 ~~~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 37 PHMIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCchhhHHHHHHH
Confidence 46899999999999999988763
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.62 E-value=0.018 Score=46.21 Aligned_cols=21 Identities=38% Similarity=0.376 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-|.|.|.||+|||||.+.|..
T Consensus 26 vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 26 TIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.49 E-value=0.023 Score=45.71 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+.+.|.|++|+||||++..+++.
T Consensus 36 ~~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 36 PHLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHH
Confidence 46899999999999999999873
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.41 E-value=0.019 Score=47.46 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|.+.|+||+|||+|++++.+.
T Consensus 44 giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHHH
Confidence 5999999999999999999864
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.36 E-value=0.012 Score=48.56 Aligned_cols=21 Identities=33% Similarity=0.691 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
+.+.|+||+|||++++.+...
T Consensus 49 l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHH
Confidence 345699999999999999874
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.31 E-value=0.021 Score=45.20 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-|+|-|..||||||+++.|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999998875
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.29 E-value=0.028 Score=48.02 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=22.1
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhc
Q 021750 122 SDGLPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 122 ~~~~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
....+-|+|.|.+|||||||.+.|..
T Consensus 77 ~k~P~iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 77 QRIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence 45567899999999999999888864
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.19 E-value=0.023 Score=46.32 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
+.+.|.|++|+||||++..+...
T Consensus 34 ~~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 34 PHLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999998863
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.90 E-value=0.025 Score=46.92 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.|.+.|+||+|||++++++.+.
T Consensus 40 giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEecCCCCCchHHHHHHHHH
Confidence 5999999999999999999874
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.65 E-value=0.029 Score=44.74 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|.|.+|+||||+.+.|...
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 5899999999999999988654
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.62 E-value=0.03 Score=44.53 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
+-|+|.|..|+||||+.+.|..
T Consensus 3 ~iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998864
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.13 E-value=0.062 Score=48.14 Aligned_cols=22 Identities=23% Similarity=0.561 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
-+|.++|++|||||-|.++|.+
T Consensus 50 sNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ccEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999976
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.07 E-value=0.033 Score=46.39 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|.+.|+||+|||+|++++++.
T Consensus 43 giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 43 GVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp EEEEBCCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcchhHHHHHHHH
Confidence 5899999999999999999875
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.06 E-value=0.036 Score=44.01 Aligned_cols=46 Identities=9% Similarity=0.070 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHhhhcCCCCEEEeecCCCCCHHHHHHHHHHHHHHHHh
Q 021750 260 EENLNDFQELIQGFFQTAPPWIMTSSVTNQGRDEILLHMAQLRNYWLK 307 (308)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~el~~~i~~~~~~~~~ 307 (308)
.+..+.+.+.+.+.......++.+.|- ..++++.+.|.+.+.++-+
T Consensus 163 ~~~~~~v~~~y~~~~~~~~~~~~IDa~--~~~e~v~~~I~~~i~~~l~ 208 (210)
T d4tmka_ 163 FDFFNRTRARYLELAAQDKSIHTIDAT--QPLEAVMDAIRTTVTHWVK 208 (210)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEEEETT--SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECC--CCHHHHHHHHHHHHHHHHh
Confidence 344445544444443334567777763 5799999999988887654
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.03 E-value=0.042 Score=42.83 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-|++.|.+|+||||+.-.|....
T Consensus 16 gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 16 GVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHcC
Confidence 48999999999999999988764
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.90 E-value=0.043 Score=42.77 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-+.|.|+||+|||+|...++..
T Consensus 25 v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 25 ITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999988763
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=91.76 E-value=0.0095 Score=46.37 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 021750 128 FALVGRSNVGKSSLLNSLV 146 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~ 146 (308)
.+|+|+.|+|||||+.+|.
T Consensus 27 tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 27 TTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHHSCCSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4678999999999999996
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=91.66 E-value=0.051 Score=42.34 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-|+|.|++|+||||+...|....
T Consensus 17 gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 17 GVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp EEEEEESSSSSHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHcC
Confidence 48999999999999999998754
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.64 E-value=0.091 Score=40.06 Aligned_cols=49 Identities=22% Similarity=0.295 Sum_probs=30.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCcc--eeccCCCCceEEEEEEEeCC-CEEEecC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRKKL--ALTSKTPGKTQCINHFRIND-SWYLVDL 178 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~~~--~~~~~~~~~t~~~~~~~~~~-~~~liDt 178 (308)
-|.+-|+-|||||||++.++..-.. ...+|+-.. +..|..++ .+.=+|.
T Consensus 35 ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l---~~~Y~~~~~~i~H~Dl 86 (158)
T d1htwa_ 35 MVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTL---VEEYNIAGKMIYHFDL 86 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTC---EEEEEETTEEEEEEEC
T ss_pred EEEEecCCCccHHHHHHHHHhhcccccccCCCceEE---EEeeccCCceEEEEEE
Confidence 4788999999999999999974322 223333322 34444333 4444665
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.52 E-value=0.035 Score=44.75 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..|+|-|..||||||+++.|...
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998863
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.52 E-value=0.068 Score=44.97 Aligned_cols=24 Identities=17% Similarity=-0.002 Sum_probs=20.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..+=|+|-|.+|+|||||...|..
T Consensus 26 ~P~iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 26 CPLFIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEeECCCCCCHHHHHHHHHH
Confidence 446789999999999999987753
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.42 E-value=0.048 Score=43.57 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 021750 128 FALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~ 147 (308)
|+|-|..||||||++..|..
T Consensus 6 I~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 6 IVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78889999999998888765
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.07 E-value=0.06 Score=41.62 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRRK 149 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~~ 149 (308)
-|++.|++|+||||+.-.|....
T Consensus 17 gvli~G~sg~GKS~la~~l~~~g 39 (169)
T d1ko7a2 17 GVLITGDSGIGKSETALELIKRG 39 (169)
T ss_dssp EEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHcC
Confidence 48999999999999999988764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.97 E-value=0.036 Score=46.77 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=16.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
|=|+|.|.+||||||+.++|..
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999999998865
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=90.86 E-value=0.072 Score=46.39 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-+++.|+||+|||+|.+++.+.
T Consensus 156 ~~~~~g~~~~gk~~~~~~~~~~ 177 (362)
T d1svma_ 156 YWLFKGPIDSGKTTLAAALLEL 177 (362)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999873
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.76 E-value=0.044 Score=45.95 Aligned_cols=19 Identities=32% Similarity=0.620 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 021750 128 FALVGRSNVGKSSLLNSLV 146 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~ 146 (308)
-+|+|+.|+||||++.+|.
T Consensus 27 nvlvG~NgsGKS~iL~Ai~ 45 (308)
T d1e69a_ 27 TAIVGPNGSGKSNIIDAIK 45 (308)
T ss_dssp EEEECCTTTCSTHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 4899999999999999883
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.56 E-value=0.065 Score=44.72 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|.|..|+|||||+..+.+.
T Consensus 46 ~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 46 FLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999998764
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.55 E-value=0.064 Score=42.88 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-+.|.|+||+|||+|+..++..
T Consensus 36 ~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 36 ITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp EEEEEESTTSSHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4788999999999999998764
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=90.43 E-value=0.038 Score=47.36 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.|.++|+||+|||+|++++..
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 589999999999999999864
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.98 E-value=0.089 Score=42.34 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-|+|=|..||||||+++.|..
T Consensus 4 ~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 588889999999999999986
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.81 E-value=0.098 Score=44.50 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
..+.++|++|||||.|...|..
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcchhHHHHHHHHh
Confidence 3689999999999999999976
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.78 E-value=0.085 Score=42.47 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-+.|.|+||+|||+|...++.+
T Consensus 38 ~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 38 ITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999988753
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.62 E-value=0.079 Score=46.13 Aligned_cols=19 Identities=21% Similarity=0.604 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 021750 128 FALVGRSNVGKSSLLNSLV 146 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~ 146 (308)
-+|+|+.|+|||+++.+|+
T Consensus 28 ~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 28 TSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4688999999999999984
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=89.58 E-value=0.088 Score=42.11 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
+.|.|++|+|||.|++++++.
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 889999999999999999874
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=89.39 E-value=0.097 Score=42.19 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-|+|.|..||||||+.+.|...
T Consensus 3 iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999653
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=89.35 E-value=0.12 Score=44.84 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 021750 124 GLPEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 124 ~~~~I~lvG~~~vGKSSLin~l~~ 147 (308)
....+.++|++|||||-|.++|..
T Consensus 67 p~~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 67 SKSNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCcceeeeCCCCccHHHHHHHHHh
Confidence 345799999999999999999865
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=89.35 E-value=0.096 Score=42.07 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
-+.|.|+||+|||+|+..+..+
T Consensus 28 l~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 28 IILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999999988764
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=89.01 E-value=0.076 Score=42.19 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-+++.|++++|||.|+++|+.
T Consensus 55 ~i~~~GP~~TGKS~f~~sl~~ 75 (205)
T d1tuea_ 55 CLVFCGPANTGKSYFGMSFIH 75 (205)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 699999999999999999876
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.00 E-value=0.11 Score=41.47 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-+.|.|+||+|||+|...++.
T Consensus 36 l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 36 VTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478889999999999999975
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=88.54 E-value=0.12 Score=42.52 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=18.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-++|.|.||+|||+|+..+..
T Consensus 37 l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 37 VIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 378999999999999888864
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=88.36 E-value=0.11 Score=44.23 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 021750 128 FALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~~ 148 (308)
+++.|+||+|||.|.++|.+.
T Consensus 126 ~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEECSSSSCHHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHH
Confidence 445799999999999999874
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=88.33 E-value=0.11 Score=45.69 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
=|++.|++|+||||.+++++..
T Consensus 160 liLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 160 IILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHHHhhh
Confidence 3999999999999999999874
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.94 E-value=0.14 Score=40.79 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 021750 128 FALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~ 147 (308)
|+|=|..||||||+++.|..
T Consensus 6 I~iEG~DGsGKST~~~~L~~ 25 (214)
T d1tmka_ 6 ILIEGLDRTGKTTQCNILYK 25 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 88999999999999998875
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.90 E-value=0.14 Score=40.98 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-+.|.|.||+|||+|...++.
T Consensus 39 ~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 39 ITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp EEEEECCTTCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999985
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.61 E-value=0.18 Score=39.93 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 021750 128 FALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~ 147 (308)
+.+.|++|+||||++..+..
T Consensus 27 lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 27 LLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 89999999999999998876
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=87.39 E-value=0.16 Score=40.17 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=17.3
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 021750 127 EFALVGRSNVGKSSLLNSLV 146 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~ 146 (308)
-+.|.|+||+|||+|...++
T Consensus 28 ~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 28 STLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47889999999999987665
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=86.64 E-value=0.18 Score=41.27 Aligned_cols=21 Identities=38% Similarity=0.275 Sum_probs=18.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-.+|.|.+|+|||+|+-.|.-
T Consensus 31 ~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 31 VGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 467899999999999988764
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.54 E-value=0.18 Score=40.71 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 021750 128 FALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 128 I~lvG~~~vGKSSLin~l~~ 147 (308)
+.|.|++|+|||+++..+..
T Consensus 37 ~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 37 YLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78889999999999998875
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=85.30 E-value=0.25 Score=42.26 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 021750 126 PEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
.+|.|=|.-|+||||+++.|...
T Consensus 7 ~rI~iEG~iGsGKSTl~~~L~~~ 29 (333)
T d1p6xa_ 7 VRIYLDGVYGIGKSTTGRVMASA 29 (333)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSG
T ss_pred EEEEEECCccCCHHHHHHHHHHH
Confidence 48999999999999999999874
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=85.29 E-value=0.18 Score=43.13 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 021750 125 LPEFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 125 ~~~I~lvG~~~vGKSSLin~l~~~ 148 (308)
..+|+|=|.-||||||+++.|...
T Consensus 5 ~lrI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 5 VLRIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp EEEEEEEESSSSCTTHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999864
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=85.18 E-value=0.23 Score=41.59 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
|++|+|.+|+|||+|+..+...
T Consensus 45 r~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 45 RGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp EEEEEECSSSSHHHHHHHHHHH
T ss_pred eeeEeCCCCCCHHHHHHHHHHH
Confidence 8999999999999999999874
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=84.54 E-value=0.23 Score=42.41 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
.+|+|=|.-||||||+++.|..
T Consensus 5 lrI~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 5 LRVYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC
T ss_pred eEEEEECCcCCCHHHHHHHHHH
Confidence 4799999999999999999975
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=84.12 E-value=0.26 Score=43.18 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.+.|+|.+|+|||+++..++.
T Consensus 52 H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCcHHHHHHHHHH
Confidence 699999999999999887764
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=83.55 E-value=0.3 Score=40.39 Aligned_cols=21 Identities=19% Similarity=0.446 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
-+.+.|+++.|||+|++.+..
T Consensus 106 ~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 106 TIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999986
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.37 E-value=2.3 Score=35.05 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 021750 127 EFALVGRSNVGKSSLLNSLVRR 148 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~~ 148 (308)
|++|+|.+|+|||+|+..+..+
T Consensus 70 r~~If~~~g~GKt~ll~~~~~~ 91 (285)
T d2jdia3 70 RELIIGDRQTGKTSIAIDTIIN 91 (285)
T ss_dssp BCEEEESTTSSHHHHHHHHHHH
T ss_pred EEEeecCCCCChHHHHHHHHHh
Confidence 8999999999999998877754
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=82.19 E-value=0.25 Score=40.75 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=14.0
Q ss_pred EEEEcCCCCCHHHH-HHH
Q 021750 128 FALVGRSNVGKSSL-LNS 144 (308)
Q Consensus 128 I~lvG~~~vGKSSL-in~ 144 (308)
+.|+|.||+||||. +++
T Consensus 17 ~lI~g~aGTGKTt~l~~r 34 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVITNK 34 (306)
T ss_dssp EEECCCTTSCHHHHHHHH
T ss_pred EEEEeeCCccHHHHHHHH
Confidence 78999999999985 444
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.61 E-value=1.1 Score=35.05 Aligned_cols=64 Identities=13% Similarity=0.170 Sum_probs=37.7
Q ss_pred CEEEecCCCcccCCCchhhhhchHHHHHHHHHhcCCccEEEEEEeCCCCCChhHHHHHHHhccCCCCEE-EEeecCCCCC
Q 021750 172 SWYLVDLPGYGYAAAPRELRTDWDKFTKDYFLNRSTLVSVFLLIDASIPAKPIDLEYASWLGQNQIPMT-LVFTKCDKRK 250 (308)
Q Consensus 172 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~viD~~~~~~~~~~~l~~~~~~~~~pvi-vV~NK~Dl~~ 250 (308)
.++++|+|+-.. ......+. .+|.+++++..+...-..-.++..++.+.+.|++ +|+||.|...
T Consensus 113 d~IiiD~~~~~~------------~~~~~~l~---~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~giv~N~~~~~~ 177 (237)
T d1g3qa_ 113 DFILIDCPAGLQ------------LDAMSAML---SGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp SEEEEECCSSSS------------HHHHHHHT---TCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred CEEEEccccccc------------ccchhhhh---hhhcccccccccceecchhhHHHHHHhhhhhhhhhhhhccccccc
Confidence 588999987321 12222222 3456888887652211222345556666788876 8999998654
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=81.58 E-value=0.4 Score=40.54 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 021750 127 EFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 127 ~I~lvG~~~vGKSSLin~l~~ 147 (308)
.+.++|++|+|||.+.+.|..
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~ 75 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAA 75 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHH
Confidence 578889999999999998875
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=81.50 E-value=0.42 Score=38.90 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=17.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHh
Q 021750 126 PEFALVGRSNVGKSSLLNSLV 146 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~ 146 (308)
.+|+|.|.-||||||+.-.|.
T Consensus 2 r~Iai~gKGGvGKTT~a~nLA 22 (269)
T d1cp2a_ 2 RQVAIYGKGGIGKSTTTQNLT 22 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHH
Confidence 479999999999999876654
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.00 E-value=0.44 Score=34.29 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 021750 126 PEFALVGRSNVGKSSLLNSLVR 147 (308)
Q Consensus 126 ~~I~lvG~~~vGKSSLin~l~~ 147 (308)
+.|.+-|.+|+|||+|.++|..
T Consensus 7 f~i~~tg~~~~gk~~ia~al~~ 28 (122)
T d1g8fa3 7 FSIVLGNSLTVSREQLSIALLS 28 (122)
T ss_dssp EEEEECTTCCSCHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHH
Confidence 5799999999999999999965
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=80.77 E-value=0.34 Score=40.34 Aligned_cols=17 Identities=12% Similarity=0.350 Sum_probs=14.0
Q ss_pred EEEEcCCCCCHHHH-HHH
Q 021750 128 FALVGRSNVGKSSL-LNS 144 (308)
Q Consensus 128 I~lvG~~~vGKSSL-in~ 144 (308)
+.|.|.+|+||||. +++
T Consensus 27 ~lV~g~aGSGKTt~l~~r 44 (318)
T d1pjra1 27 LLIMAGAGSGKTRVLTHR 44 (318)
T ss_dssp EEEEECTTSCHHHHHHHH
T ss_pred EEEEecCCccHHHHHHHH
Confidence 78999999999974 444
|