Citrus Sinensis ID: 021751

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MDPVTAHGHSLPPPFHTRDFQLHHHQQQQQFHHQQQQNSEEEQSGSSSGMNKGIKLDRGDDNNNNSSSEGKELFQGSGEGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYERLPLEEEEGQLPMQGGSIGSPGGGAGAGVVGQQQPQQQQPLMGDANNNGPLFHGLPPNLLNSIQLPTEAYWATGGRPPY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccEEEEEEcccccHHHHHHHHHHHccEEEEEEEcccEEEcEEEccccccccEEEEEEEEEEEEEEEEccccccccccccEEEEEEcccccEEcccccccEEEEccEEEEEEEccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccHHHHHHcHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEcccccccEEEEEcEEEEEEEcccccccccccccccEEEEEEcccccEEEccEHHHHHccccEEEEEEEccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdpvtahghslpppfhtrdfqlhhhQQQQQFHhqqqqnseeeqsgsssgmnkgikldrgddnnnnsssegkelfqgsgegeitrrprgrpagsknkpkppiiitRDSANALRTHVMEIADGCDIVESVATFARRRQRGVcilsgtgtvtnvtlrqpaspgaiVSLHGRFEILslsgsflpppappaasglTIYLaggqgqvvgGSVVGTLMTSGPVVIMAASFsnaayerlpleeeegqlpmqggsigspgggagagvvgqqqpqqqqplmgdannngplfhglppnllnsiqlpteaywatggrppy
Flexible Loop (DISEMBL)
mdpvtahgHSLPPPFHTRDFQLHHHQQQQQFHHQQQQNSEEEQSGSSSGMNKGIKLdrgddnnnnsssegkelfqgsgegeitrrprgrpagsknkpkppiiiTRDSANALRTHVMEIADGCDIVESVATFARRRQRgvcilsgtgtvtnvtlrqpASPGAIVSLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYERLPLEEEEGQLPMQGGSIGSPGGGAGAGVVGQQQPQQQQPLMGDANNNGPLFHGLPPNLLNSIQLPTEaywatggrppy
Low Complexity Region (SEG)
MDPVTAHGHSLPPPFHTRDfqlhhhqqqqqfhhqqqqNseeeqsgsssgMNKGIKLDRGDDnnnnsssEGKELFQGSGEGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEIlslsgsflpppappaasglTIYLAggqgqvvggsvvgTLMTSGPVVIMAASFSNAAYERLPLEEEEGQLPMqggsigspgggagagvvgqqqpqqqqPLMGDANNNGPLFHGLPPNLLNSIQLPTEAYWATGGRPPY
Disordered region (IsUnstruct)
****************************************************************************************************IIITRDSANALRTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEILSL***************LTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNA*******************************************************HGLPPNLLNSIQLPTEAYWA*******
Disordered Region (DISOPRED)
*********SLPPPFHTRD******************************************************************************************ALRTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASF****************************************************************************W********
Disordered Region (DISEMBL)
*********SLPPPFHTRDFQ****************************MNKGIKLDRGDDNN********************************KPKPPIIITRDSANALRTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYERLPLEEEEGQLPMQGGSIGSPGGGAGAGVVGQQQPQQQQPLMGDANNNGPLFHGLPPNLLNSIQLPTEAYW********
Disordered Region (DISPRO)
**********LPPPFHTRDFQLHHHQQQQQFHH**************************************************************KPKPPIIITRDSANALRTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYERLP********************************************NGPLFHGLPPNLLNSIQLPTEAYWATGGRPPY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPVTAHGHSLPPPFHTRDFQLHHHQQQQQFHHQQQQNSEEEQSGSSSGMNKGIKLDRGDDNNNNSSSEGKELFQGSGEGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYERLPLEEEEGQLPMQGGSIGSPGGGAGAGVVGQQQPQQQQPLMGDANNNGPLFHGLPPNLLNSIQLPTEAYWATGGRPPY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	308	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.587	0.581	0.575	2e-40

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score =  166 bits (421), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/205 (57%), Positives = 146/205 (71%), Gaps = 24/205 (11%)

Query: 38  NSEEEQSGSSSGMNKGIKLDRGDDNNNNSSSEGKELFQGSGEGEITRRPRGRPAGSKNKP 97
           +   E   S+   ++  + D   D N +SS+ GK             RPRGRP GSKNK 
Sbjct: 55  DDSRESDHSNKDHHQQGRPD--SDPNTSSSAPGK-------------RPRGRPPGSKNKA 99

Query: 98  KPPIIITRDSANALRTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPA 157
           KPPII+TRDS NALR+HV+E++ G DIVESV+T+ARRR RGV +L G GTV+NVTLRQP 
Sbjct: 100 KPPIIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPV 159

Query: 158 SP---------GAIVSLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVG 208
           +P         G +V+LHGRFEILSL+G+ LPPPAPP A GL+I+LAGGQGQVVGGSVV 
Sbjct: 160 TPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPAPPGAGGLSIFLAGGQGQVVGGSVVA 219

Query: 209 TLMTSGPVVIMAASFSNAAYERLPL 233
            L+ S PV++MAASFSNA +ERLP+
Sbjct: 220 PLIASAPVILMAASFSNAVFERLPI 244

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
224071611	303	predicted protein [Populus trichocarpa]	0.974	0.990	0.816	1e-110
255537141	298	ESC, putative [Ricinus communis] gi|2235	0.954	0.986	0.794	1e-103
224058649	302	predicted protein [Populus trichocarpa]	0.974	0.993	0.796	1e-103
225426655	302	PREDICTED: putative DNA-binding protein	0.977	0.996	0.812	1e-103
224127406	300	predicted protein [Populus trichocarpa]	0.961	0.986	0.721	1e-100
225453933	300	PREDICTED: putative DNA-binding protein	0.964	0.99	0.742	3e-96
356540489	298	PREDICTED: putative DNA-binding protein	0.957	0.989	0.706	1e-94
356563284	287	PREDICTED: putative DNA-binding protein	0.925	0.993	0.709	1e-94
356514176	283	PREDICTED: putative DNA-binding protein	0.918	1.0	0.704	2e-94
224063913	298	predicted protein [Populus trichocarpa]	0.954	0.986	0.721	5e-94

>gi|224071611|ref|XP_002303540.1| predicted protein [Populus trichocarpa] gi|222840972|gb|EEE78519.1| predicted protein [Populus trichocarpa]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 254/311 (81%), Positives = 273/311 (87%), Gaps = 11/311 (3%)

Query: 1   MDPVTAHGHSLPPPFHTRDFQLHHHQQQQQFHHQQQQ--NSEEEQSGSSSGMNKGIKLDR 58
           MDPVTAHGHSLPPPFHTRDFQLHHHQQQQQ     QQ  NSE+EQSGSSSG+NK +K +R
Sbjct: 1   MDPVTAHGHSLPPPFHTRDFQLHHHQQQQQHQFHHQQQQNSEDEQSGSSSGLNKSLKRER 60

Query: 59  GDDNNNNSSSEGKELF-QGSGEGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVME 117
            ++NN+  +SEGKEL   GSGEGEITRRPRGRP+GSKNKPKPPIIITRDSANALRTH+ME
Sbjct: 61  DENNNSMGNSEGKELITSGSGEGEITRRPRGRPSGSKNKPKPPIIITRDSANALRTHLME 120

Query: 118 IADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEILSLSGS 177
           +ADGCDIVESVATFARRRQRGVCI+SGTGTVTNVTLRQPASPGAIV+LHGRFEILSL+GS
Sbjct: 121 VADGCDIVESVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVTLHGRFEILSLAGS 180

Query: 178 FLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYERLPLEEEE 237
           FLPPPAPPAA+GLTIYLAGGQGQVVGGSVVGTL  SGPVVIMAASFSNAAYERLPLEEE+
Sbjct: 181 FLPPPAPPAATGLTIYLAGGQGQVVGGSVVGTLTASGPVVIMAASFSNAAYERLPLEEED 240

Query: 238 GQLPMQGGSIGSPGGGAGAGVVGQQQPQQQQPLMGDANNNGPLFHGLPPNLLNSIQLPTE 297
            Q+PMQGG +GSPG       VGQQQ Q QQ  +  A  N  LFHGLPPNLLNSIQLP E
Sbjct: 241 PQMPMQGGEMGSPGA------VGQQQQQPQQQQVM-AEQNAQLFHGLPPNLLNSIQLPAE 293

Query: 298 AYWATGGRPPY 308
           AYWAT GRPPY
Sbjct: 294 AYWAT-GRPPY 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537141|ref|XP_002509637.1| ESC, putative [Ricinus communis] gi|223549536|gb|EEF51024.1| ESC, putative [Ricinus communis]

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 248/312 (79%), Positives = 265/312 (84%), Gaps = 18/312 (5%)

Query: 1   MDPVTAHGHSLPPPFHTRDFQLHHHQQQQQFHHQQQQ--NSEEEQSGSSSG--MNKGIKL 56
           MDPVTAHGHSLPPPFHTRDFQLHHHQQQQQ      Q  NSE+EQSGSSSG  +NK  K 
Sbjct: 1   MDPVTAHGHSLPPPFHTRDFQLHHHQQQQQQFSHHHQQQNSEDEQSGSSSGAGLNKSQKR 60

Query: 57  DRGDDNNNNSSSEGKELFQGSGEGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVM 116
           +R      +  SEGKEL    G GEITRRPRGRPAGSKNKPKPPIIITRDSANALRTH+M
Sbjct: 61  ER------DEGSEGKELIPSGGSGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHLM 114

Query: 117 EIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEILSLSG 176
           E+ADGCDIVESVATFARRRQRGV I+SGTGTVTNVTLRQPASPGA+V+LHGRFEILSL+G
Sbjct: 115 EVADGCDIVESVATFARRRQRGVSIMSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAG 174

Query: 177 SFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYERLPLEEE 236
           SFLPPPAPPAA+GLTIYLAGGQGQVVGGSVVGTL+ SGPVVIMAASFSNAAYERLPLEEE
Sbjct: 175 SFLPPPAPPAATGLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEEE 234

Query: 237 EGQLPMQGGSIGSPGGGAGAGVVGQQQPQQQQPLMGDANNNGPLFHGLPPNLLNSIQLPT 296
           + QLPMQGG+IGSPG      V  QQQ QQQQ ++G+AN    LF GL PNLLNSIQLP 
Sbjct: 235 DAQLPMQGGAIGSPG-----AVGQQQQHQQQQQVLGEANAQ--LFQGLQPNLLNSIQLPA 287

Query: 297 EAYWATGGRPPY 308
           EAYWAT GRPPY
Sbjct: 288 EAYWAT-GRPPY 298

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058649|ref|XP_002299584.1| predicted protein [Populus trichocarpa] gi|222846842|gb|EEE84389.1| predicted protein [Populus trichocarpa]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 247/310 (79%), Positives = 266/310 (85%), Gaps = 10/310 (3%)

Query: 1   MDPVTAHGHSLPPPFHTRDFQLHHHQQQQQFHHQQQQ-NSEEEQSGSSSGMNKGIKLDRG 59
           MDPVTAHGHSLPPPFHTRDFQLH  QQQQ   H QQQ NSE+EQSGSSSG+NK +K +R 
Sbjct: 1   MDPVTAHGHSLPPPFHTRDFQLHQQQQQQHQFHHQQQQNSEDEQSGSSSGLNKSLKRERD 60

Query: 60  DDNNNNSSSEGKELF-QGSGEGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEI 118
           + NN+  + EG+EL   G G+GEITRRPRGRPAGSKNKPKPPIIITRDSANALRTH+ME+
Sbjct: 61  ESNNSMGNREGQELITSGDGDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHLMEV 120

Query: 119 ADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEILSLSGSF 178
           ADGCDIVESVATFARRRQRGVCI+SGTGTVTNVTLRQPASPGAIV+LHGRFEILSL+GSF
Sbjct: 121 ADGCDIVESVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVTLHGRFEILSLAGSF 180

Query: 179 LPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYERLPLEEEEG 238
           LPPPAPPAA+GLTIYLAGGQGQVVGGSVVGTL  SGPVVIMAASFSNAAYERLPLEEE+ 
Sbjct: 181 LPPPAPPAATGLTIYLAGGQGQVVGGSVVGTLTASGPVVIMAASFSNAAYERLPLEEEDP 240

Query: 239 QLPMQGGSIGSPGGGAGAGVVGQQQPQQQQPLMGDANNNGPLFHGLPPNLLNSIQLPTEA 298
           Q+PMQGG       G+  GV  QQQ  QQ  +M  A  N  LFHGLPPNLLNSIQLP EA
Sbjct: 241 QMPMQGGG-----MGSPGGVGQQQQQPQQHQVM--AEQNAQLFHGLPPNLLNSIQLPAEA 293

Query: 299 YWATGGRPPY 308
           YWAT GRPPY
Sbjct: 294 YWAT-GRPPY 302

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426655|ref|XP_002281296.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Vitis vinifera]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 251/309 (81%), Positives = 265/309 (85%), Gaps = 8/309 (2%)

Query: 1   MDPVTAHGHSLPPPFHTRDFQLHHHQQQQQFHHQQQQNSEEEQSGSSSGMNKGIKLDRGD 60
           MDPVTAHGHSLPPPFHTRD  LH H QQQ   H QQQNSE+EQSGSS G+N+G K DR D
Sbjct: 1   MDPVTAHGHSLPPPFHTRD--LHLHHQQQHQFHPQQQNSEDEQSGSS-GLNRGQKRDRDD 57

Query: 61  DN-NNNSSSEGKELFQGSGEGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIA 119
           +N N N  SEG E+   SG+GEI+RRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIA
Sbjct: 58  NNENTNGGSEGNEMVGLSGDGEISRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIA 117

Query: 120 DGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEILSLSGSFL 179
           DGCDIVESVATFARRRQRGVCI+SGTGTVTNVTLRQPASPGAIV+LHGRFEILSLSGSFL
Sbjct: 118 DGCDIVESVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVTLHGRFEILSLSGSFL 177

Query: 180 PPPAPPAASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYERLPLEEEEGQ 239
           PPPAPPAA+GLTIYLAGGQGQVVGGSVVG L+ SGPVVIMAASFSNAAYERLPLEEE+  
Sbjct: 178 PPPAPPAATGLTIYLAGGQGQVVGGSVVGQLLASGPVVIMAASFSNAAYERLPLEEEDPA 237

Query: 240 LPMQGGSIGSPGGGAGAGVVGQQQPQQQQPLMGDANNNGPLFHGLPPNLLNSIQLPTEAY 299
           LPM GGS+GSPGG        QQ  Q QQ L   A+ N PLFHGLPPNLLNSIQLP EAY
Sbjct: 238 LPMPGGSLGSPGGVGQHQPPQQQPQQPQQLL---ADPNAPLFHGLPPNLLNSIQLPAEAY 294

Query: 300 WATGGRPPY 308
           WAT GRPPY
Sbjct: 295 WAT-GRPPY 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127406|ref|XP_002320066.1| predicted protein [Populus trichocarpa] gi|222860839|gb|EEE98381.1| predicted protein [Populus trichocarpa]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 225/312 (72%), Positives = 250/312 (80%), Gaps = 16/312 (5%)

Query: 1   MDPVTAHGHSLPPPFHTRDFQLHHHQQQQQFHHQQQQNSEEEQSGSSSGMNKGIKLDRGD 60
           MDPV+AHG  LPPPFHTRD          QF H QQQNSE+EQSG+   +N+G K +  +
Sbjct: 1   MDPVSAHGRPLPPPFHTRD------FHLHQFQHHQQQNSEDEQSGNGD-LNRGQKREHDE 53

Query: 61  DNNNNSSSEGKELFQGS--GEGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEI 118
            NNNN++ EG EL   S  GEGEI+RRPRGRPAGSKNKPKPPIIITRDSANALR+HVMEI
Sbjct: 54  INNNNNTVEGLELVPSSSGGEGEISRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEI 113

Query: 119 ADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEILSLSGSF 178
           A G DI+ESV+TFARRRQRGVCILSGTGTVTNVTL+QPASPGA+V+LHGRFEILSLSGSF
Sbjct: 114 ATGSDIMESVSTFARRRQRGVCILSGTGTVTNVTLKQPASPGAVVTLHGRFEILSLSGSF 173

Query: 179 LPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYERLPLEEE-E 237
           LPPPAPPAASGLT+YLAGGQGQV+GGSV G L+ SGPVV+MAASF NAAYERLPLEE+ E
Sbjct: 174 LPPPAPPAASGLTVYLAGGQGQVIGGSVAGPLLASGPVVVMAASFGNAAYERLPLEEDIE 233

Query: 238 GQLPMQG-GSIGSPGGGAGAGVVGQQQPQQQQPLMGDANNNGPLFHGLPPNLLNSIQLPT 296
            Q PM G G +GSP       +  QQQ QQQQ LM D   +  LF GLP NLLNS+QLP 
Sbjct: 234 SQTPMLGSGPLGSP---GINNIGQQQQNQQQQQLMQDPKTS--LFQGLPQNLLNSVQLPA 288

Query: 297 EAYWATGGRPPY 308
           EAYW TGGRPPY
Sbjct: 289 EAYWGTGGRPPY 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453933|ref|XP_002279636.1| PREDICTED: putative DNA-binding protein ESCAROLA [Vitis vinifera] gi|147867329|emb|CAN81187.1| hypothetical protein VITISV_029906 [Vitis vinifera] gi|296089162|emb|CBI38865.3| unnamed protein product [Vitis vinifera]

 Score =  357 bits (916), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 231/311 (74%), Positives = 252/311 (81%), Gaps = 14/311 (4%)

Query: 1   MDPVTAHGHSLPPPFHTRDFQLHHHQQQQQFHHQQQQNSEEEQSGSSSGMNKGIKLDRGD 60
           MDPVTAHG  LPPPFHTRD QLHHH Q Q      Q NSE+EQSGSSS +N+  K DR +
Sbjct: 1   MDPVTAHGRPLPPPFHTRDLQLHHHHQYQH---HPQANSEDEQSGSSS-LNRAQKRDRDE 56

Query: 61  DN--NNNSSSEGKELFQGSGEGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEI 118
            N  NN S  +GKE    SG+GEITRRPRGRPAGSKNKPKPPIIITRDSANALR+HVMEI
Sbjct: 57  SNATNNTSPIDGKEFGTSSGDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEI 116

Query: 119 ADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEILSLSGSF 178
           A GCDI++S+ TFARRRQRG+CILSG+GTVTNVTLRQPASPGA+V+LHGRFEILSLSGSF
Sbjct: 117 ATGCDIMDSLNTFARRRQRGICILSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSF 176

Query: 179 LPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYERLPLEEEEG 238
           LPPPAPPAASGLTIYLAGGQGQVVGGSVVG L+ SGPVVIMAASF NAAYERLPLE+EE 
Sbjct: 177 LPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLPLEDEEP 236

Query: 239 QLPMQG-GSIGSPGGGAGAGVVGQQQPQQQQPLMGDANNNGPLFHGLPPNLLNSIQLPTE 297
           Q+P+ G G +GSP      G+VGQQ  QQQQ      + N  LF GLPPNLLNS QLP E
Sbjct: 237 QVPIPGSGPLGSP------GMVGQQPQQQQQQQQLLPDPNASLFQGLPPNLLNSCQLPAE 290

Query: 298 AYWATGGRPPY 308
           AYW T  RPPY
Sbjct: 291 AYWGT-ARPPY 300

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540489|ref|XP_003538721.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max]

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 219/310 (70%), Positives = 242/310 (78%), Gaps = 15/310 (4%)

Query: 1   MDPVTAHGHSLPPPFHT-RDFQLHHHQQQQQFHHQQQQNSEEEQSGSSSGMNKGIKLDRG 59
           MDP+TAHGHSLPPPFHT RD         QQ  HQ     E+EQSGSS G+N        
Sbjct: 1   MDPITAHGHSLPPPFHTARDLH----LHHQQQQHQFHSLQEDEQSGSSGGLNLAAHKRER 56

Query: 60  DDNNNNSSSEGKELFQGSGEGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIA 119
           ++NNN   S+GKE   GS E EI+RRPRGRPAGSKNKPKPPIIITRDSANAL+THVME+A
Sbjct: 57  EENNN---SDGKEGGAGSAETEISRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVA 113

Query: 120 DGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEILSLSGSFL 179
           DGCDIVESV+ FARRRQRGVCI+SGTGTVTNVTLRQPAS GA+V+LHGRFEILSL+GSFL
Sbjct: 114 DGCDIVESVSAFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLAGSFL 173

Query: 180 PPPAPPAASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYERLPLEEEEGQ 239
           PPPAPP ASGLTIYLAGGQGQVVGGSVVG L+ SGPVVIM+ASFSNAAYERLPLE+EE  
Sbjct: 174 PPPAPPEASGLTIYLAGGQGQVVGGSVVGALIASGPVVIMSASFSNAAYERLPLEDEEPS 233

Query: 240 LPMQGGSIGSPGGGAGAGVVGQQQPQQQQPLMGDANNNGPLFHGLPPNLLNSIQLP-TEA 298
           + +QGG       G G GV   Q P Q   LMGD+    PLFHGL PNLLNS+Q+P TE 
Sbjct: 234 IGLQGGGSIG-SPGGGGGVGQSQAPHQ---LMGDS-TTAPLFHGLNPNLLNSVQMPSTET 288

Query: 299 YWATGGRPPY 308
           +WAT GR PY
Sbjct: 289 FWAT-GRSPY 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563284|ref|XP_003549894.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max]

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 220/310 (70%), Positives = 250/310 (80%), Gaps = 25/310 (8%)

Query: 1   MDPVTAHGHSLPPPFHTRDFQLHHHQQQQQFHHQQ-QQNSEEEQSGSSSGMNKGIKLDRG 59
           MDP++AHGHSLPPPFHTRD  LHH QQQQQ   Q   Q +E+E SGSS       K +R 
Sbjct: 1   MDPISAHGHSLPPPFHTRDLHLHHQQQQQQHQFQSLNQATEDENSGSSGAQ----KRERE 56

Query: 60  DDNNNNSSSEGKELFQGSGEGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIA 119
           +++N N+        +G+GE EITRRPRGRPAGSKNKPKPPIIITRDSANA+RTH+ME+A
Sbjct: 57  ENSNGNN--------EGAGEAEITRRPRGRPAGSKNKPKPPIIITRDSANAMRTHMMEVA 108

Query: 120 DGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEILSLSGSFL 179
           DG DIVESV+ FAR+RQRG+CI+SGTGTVTNVTLRQPAS G++V+LHGRFEILSLSGSFL
Sbjct: 109 DGYDIVESVSEFARKRQRGICIMSGTGTVTNVTLRQPASSGSVVTLHGRFEILSLSGSFL 168

Query: 180 PPPAPPAASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYERLPLEEEE-G 238
           PPPAPPAASGLTIYLAGGQGQVVGGSVVGTL+ SGPVVIMAASFSNAAYERLPLE+E+  
Sbjct: 169 PPPAPPAASGLTIYLAGGQGQVVGGSVVGTLVASGPVVIMAASFSNAAYERLPLEDEDPN 228

Query: 239 QLPMQGGSIGSPGGGAGAGVVGQQQPQQQQPLMGDANNNGPLFHGLPPNLLNSIQLPTEA 298
            L MQGGSIGSP G +G G        Q Q L GDA    PLFHGLPPNLLNS+Q+P+E 
Sbjct: 229 SLQMQGGSIGSP-GASGVG--------QSQLLGGDA--TAPLFHGLPPNLLNSVQMPSEP 277

Query: 299 YWATGGRPPY 308
           +WA   RPP+
Sbjct: 278 FWAASTRPPF 287

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514176|ref|XP_003525782.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 217/308 (70%), Positives = 241/308 (78%), Gaps = 25/308 (8%)

Query: 1   MDPVTAHGHSLPPPFHTRDFQLHHHQQQQQFHHQQQQNSEEEQSGSSSGMNKGIKLDRGD 60
           MDP++AHGHSLPPPFHTRD  LHH QQQ QF    Q  +E+E SGSS             
Sbjct: 1   MDPISAHGHSLPPPFHTRDLHLHHQQQQHQFQSLNQA-TEDENSGSSGA----------- 48

Query: 61  DNNNNSSSEGKELFQGSGEGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIAD 120
                   E     +G+GE EITRRPRGRPAGSKNKPKPPIIITRDSANA+RTH+ME+AD
Sbjct: 49  --QKREREENSNNNEGAGEAEITRRPRGRPAGSKNKPKPPIIITRDSANAMRTHMMEVAD 106

Query: 121 GCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEILSLSGSFLP 180
           GCDIVESV+ FAR+RQRGVCI+SGTGTV NVTLRQPAS G++V+LHGRFEILSLSGSFLP
Sbjct: 107 GCDIVESVSEFARKRQRGVCIMSGTGTVNNVTLRQPASSGSVVTLHGRFEILSLSGSFLP 166

Query: 181 PPAPPAASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYERLPLEEEEGQL 240
           PPAPPAASGLTIYLAGGQGQVVGGSVVGTL+ SGPVVIMAASFSNAAYERLPLE+E+  L
Sbjct: 167 PPAPPAASGLTIYLAGGQGQVVGGSVVGTLVASGPVVIMAASFSNAAYERLPLEDEDPSL 226

Query: 241 PMQGGSIGSPGGGAGAGVVGQQQPQQQQPLMGDANNNGPLFHGLPPNLLNSIQLPTEAYW 300
            MQGGSIGSP G +G G        Q Q L GDA    PLFHGLPPNLLNS+Q+P+E +W
Sbjct: 227 QMQGGSIGSP-GASGVG--------QSQLLGGDA--TAPLFHGLPPNLLNSVQMPSEPFW 275

Query: 301 ATGGRPPY 308
           A   RPP+
Sbjct: 276 AASARPPF 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063913|ref|XP_002301300.1| predicted protein [Populus trichocarpa] gi|222843026|gb|EEE80573.1| predicted protein [Populus trichocarpa]

 Score =  350 bits (898), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 225/312 (72%), Positives = 248/312 (79%), Gaps = 18/312 (5%)

Query: 1   MDPVTAHGHSLPPPFHTRDFQLHHHQQQQQFHHQQQQNSEEEQSGSSSGMNKGIKLDRGD 60
           MDPV AHG  LPPPFHTRD          QF HQQQQNSE+EQSG+ + +N+G K +  +
Sbjct: 1   MDPVAAHGRPLPPPFHTRD------FHLHQFQHQQQQNSEDEQSGNGN-LNRGQKREHAE 53

Query: 61  -DNNNNSSSEGKELFQGS--GEGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVME 117
              NNN+++EGKEL   S  GEGEITRRPRGRPAGSKNKPKPPIIITRDS NALR+HVME
Sbjct: 54  IATNNNNTAEGKELVPSSAGGEGEITRRPRGRPAGSKNKPKPPIIITRDSPNALRSHVME 113

Query: 118 IADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEILSLSGS 177
           IA GCDI+ESV+TFARRRQRGVCILS TGTVTNVTL+QPASPGA+V+LHGRFEILSLSGS
Sbjct: 114 IATGCDIMESVSTFARRRQRGVCILSATGTVTNVTLKQPASPGAVVTLHGRFEILSLSGS 173

Query: 178 FLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYERLPLEEEE 237
           FLPPPAPPAASGLTIYLAGGQGQVVGGSVVG L+ SGPVVIMAASF NAAYERLPLEE+E
Sbjct: 174 FLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLPLEEDE 233

Query: 238 GQLPMQG-GSIGSPGGGAGAGVVGQQQPQQQQPLMGDANNNGPLFHGLPPNLLNSIQLPT 296
            Q P+ G G +GSPG  +      QQ    Q P       N  LF GLP NLLNS+QLP+
Sbjct: 234 SQTPVPGTGPLGSPGVSSIGQQNQQQHQLMQDP-------NTSLFQGLPQNLLNSVQLPS 286

Query: 297 EAYWATGGRPPY 308
           EAYW TGGRPPY
Sbjct: 287 EAYWGTGGRPPY 298

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
TAIR|locus:2118051	339	AT4G12050 "AT4G12050" [Arabido	0.805	0.731	0.498	1.1e-64
TAIR|locus:2132639	324	AT4G22810 "AT4G22810" [Arabido	0.951	0.904	0.471	6.9e-63
TAIR|locus:2050946	317	AHL22 "AT2G45430" [Arabidopsis	0.753	0.731	0.521	1.2e-56
TAIR|locus:2129490	292	AT4G17800 [Arabidopsis thalian	0.532	0.561	0.530	8.7e-49
TAIR|locus:2045585	257	TEK "AT2G42940" [Arabidopsis t	0.516	0.618	0.559	9.7e-46
TAIR|locus:2063469	285	GIK "GIANT KILLER" [Arabidopsi	0.535	0.578	0.536	2.7e-45
TAIR|locus:2084958	315	AHL19 "AT-hook motif nuclear-l	0.584	0.571	0.534	1.5e-44
TAIR|locus:2101916	265	AHL18 "AT3G60870" [Arabidopsis	0.516	0.6	0.592	8.1e-44
TAIR|locus:2122148	299	AGF1 "AT4G35390" [Arabidopsis	0.730	0.752	0.442	3.5e-43
TAIR|locus:505006460	281	AHL20 "AT4G14465" [Arabidopsis	0.587	0.644	0.497	1.9e-42

TAIR|locus:2118051 AT4G12050 "AT4G12050" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
 Identities = 141/283 (49%), Positives = 167/283 (59%)

Query:    50 MNKGIKLDR---GDD----XXXXXXXEGKELFQGSGEG---------EITRRPRGRPAGS 93
             +N+ IK+DR    D+           EGKE+    GEG         ++TRRPRGRPAGS
Sbjct:    68 LNRSIKMDREETSDNMDNIANTNSGSEGKEMSLHGGEGGSGGGGSGEQMTRRPRGRPAGS 127

Query:    94 KNKPKPPIIITRDSANALRTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTL 153
             KNKPK PIIITRDSANALRTHVMEI DGCDIV+ +ATFARRRQRGVC++SGTG+VTNVT+
Sbjct:   128 KNKPKAPIIITRDSANALRTHVMEIGDGCDIVDCMATFARRRQRGVCVMSGTGSVTNVTI 187

Query:   154 RQPASP-GAIVSLHGRFEIXXXXXXXXXXXXXXXXXXXTIYLAXXXXXXXXXXXXXTLMT 212
             RQP SP G++VSLHGRFEI                   ++YLA              L+ 
Sbjct:   188 RQPGSPPGSVVSLHGRFEILSLSGSFLPPPAPPAATGLSVYLAGGQGQVVGGSVVGPLLC 247

Query:   213 SGPVVIMAASFSNAAYERLPLEEEEGQLPMXXXXXXXXXXXXXXXXXXXXXXXXXXPLMG 272
             SGPVV+MAASFSNAAYERLPLEE+E Q P+                          P+MG
Sbjct:   248 SGPVVVMAASFSNAAYERLPLEEDEMQTPVQGGGGGGGGGGGMGSP----------PMMG 297

Query:   273 DANNNGPLF--HGLPPNLLNSIQLPT-----EAYWATGGRPPY 308
                    +    GLPPNLL S+QLP      + YW+TG RPPY
Sbjct:   298 QQQAMAAMAAAQGLPPNLLGSVQLPPPQQNDQQYWSTG-RPPY 339

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2132639 AT4G22810 "AT4G22810" [Arabidopsis thaliana (taxid:3702)]

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 160/339 (47%), Positives = 186/339 (54%)

Query:     1 MDPVTAHGH--SLPPPFHTRDXXXXXXXXXXXXXXXXXX---NXXXXXXXXXXXMNKGIK 55
             MDPV +HG   SLPPPFH RD                     N            N+ IK
Sbjct:     1 MDPVQSHGSQSSLPPPFHARDFQLHLQQQQQEFFLHHHQQQRNQTDGDQQGGSGGNRQIK 60

Query:    56 LDRG------DDXXXXXXXEGKEL--FQGSGEG--------EITRRPRGRPAGSKNKPKP 99
             +DR       D+       EGK++    GSGEG        ++TRRPRGRPAGSKNKPKP
Sbjct:    61 MDREETSDNIDNIANNSGSEGKDIDIHGGSGEGGGGSGGDHQMTRRPRGRPAGSKNKPKP 120

Query:   100 PIIITRDSANALRTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPAS- 158
             PIIITRDSANALRTHVMEI DGCD+VESVATFARRRQRGVC++SGTG VTNVT+RQP S 
Sbjct:   121 PIIITRDSANALRTHVMEIGDGCDLVESVATFARRRQRGVCVMSGTGNVTNVTIRQPGSH 180

Query:   159 --PGAIVSLHGRFEIXXXXXXXXXXXXXXXXXXXTIYLAXXXXXXXXXXXXXTLMTSGPV 216
               PG++VSLHGRFEI                   ++YLA              L+ +GPV
Sbjct:   181 PSPGSVVSLHGRFEILSLSGSFLPPPAPPTATGLSVYLAGGQGQVVGGSVVGPLLCAGPV 240

Query:   217 VIMAASFSNAAYERLPLEEEEGQLPMXXXXXXXXXXXXXXXXXXXXXXXXXXPLMGDA-- 274
             V+MAASFSNAAYERLPLEE+E Q P+                          P+MG    
Sbjct:   241 VVMAASFSNAAYERLPLEEDEMQTPVHGGGGGGSLESP--------------PMMGQQLQ 286

Query:   275 -NNNGPLFH-GLPPNLLNSIQLPTE---AYWATGGRPPY 308
                     H GLPPNLL S+QL  +   +YW+TG RPPY
Sbjct:   287 HQQQAMSGHQGLPPNLLGSVQLQQQHDQSYWSTG-RPPY 324

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2050946 AHL22 "AT2G45430" [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 124/238 (52%), Positives = 144/238 (60%)

Query:    76 GSGEGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIADGCDIVESVATFARRR 135
             G G+  ITRRPRGRPAGSKNKPKPPIIITRDSANAL++HVME+A+GCD++ESV  FARRR
Sbjct:    81 GGGDNHITRRPRGRPAGSKNKPKPPIIITRDSANALKSHVMEVANGCDVMESVTVFARRR 140

Query:   136 QRGVCILSGTGTVTNVTLRQPAS-PG---AIVSLHGRFEIXXXXXXXXXXXXXXXXXXXT 191
             QRG+C+LSG G VTNVT+RQPAS PG   ++V+LHGRFEI                   T
Sbjct:   141 QRGICVLSGNGAVTNVTIRQPASVPGGGSSVVNLHGRFEILSLSGSFLPPPAPPAASGLT 200

Query:   192 IYLAXXXXXXXXXXXXXTLMTSGPVVIMAASFSNAAYERLPLEEEEGQLPMXXXXXXXXX 251
             IYLA              LM SGPVVIMAASF NAAYERLPLEE++ +            
Sbjct:   201 IYLAGGQGQVVGGSVVGPLMASGPVVIMAASFGNAAYERLPLEEDDQEEQTAGAVANNID 260

Query:   252 XXXXXXXXXXXXXXXXXPLMGDANNNGPLF-HGLPPNLLNSIQLPTEAYWATGGRPPY 308
                                      +   F  GLPPNL+NS+QLP EAYW T  RP +
Sbjct:   261 GNATMGGGTQTQTQTQQQQQQQLMQDPTSFIQGLPPNLMNSVQLPAEAYWGTP-RPSF 317

GO:0003680 "AT DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=IMP

GO:0009647 "skotomorphogenesis" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2129490 AT4G17800 [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
 Identities = 87/164 (53%), Positives = 113/164 (68%)

Query:    76 GSGEGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIADGCDIVESVATFARRR 135
             G G   + RRPRGRP GSKNKPKPP+IITR+SAN LR H++E+ +GCD+ + VAT+ARRR
Sbjct:    74 GGGGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVTNGCDVFDCVATYARRR 133

Query:   136 QRGVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEIXXXXXXXXXXXXXXXXXXXTIYLA 195
             QRG+C+LSG+GTVTNV++RQP++ GA+V+L G FEI                   TI+LA
Sbjct:   134 QRGICVLSGSGTVTNVSIRQPSAAGAVVTLQGTFEILSLSGSFLPPPAPPGATSLTIFLA 193

Query:   196 XXXXXXXXXXXXXTLMTSGPVVIMAASFSNAAYERLPLEEEEGQ 239
                           L  +GPV+++AASF+N AYERLPLEE+E Q
Sbjct:   194 GGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLEEDEQQ 237

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2045585 TEK "AT2G42940" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
 Identities = 89/159 (55%), Positives = 111/159 (69%)

Query:    79 EGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIADGCDIVESVATFARRRQRG 138
             EGE+ +RPRGRPAGSKNKPKPPII+T DS N+LR + +EI+ GCDI E+++ FARR+QRG
Sbjct:    48 EGEMAKRPRGRPAGSKNKPKPPIIVTHDSPNSLRANAVEISSGCDICETLSDFARRKQRG 107

Query:   139 VCILSGTGTVTNVTLRQPASPGAIVSLHGRFEIXXXXXXXXXXXXXXXXXXXTIYLAXXX 198
             +CILS  G VTNVTLRQPAS GAIV+LHGR+EI                   TIYLA   
Sbjct:   108 LCILSANGCVTNVTLRQPASSGAIVTLHGRYEILSLLGSILPPPAPLGITGLTIYLAGPQ 167

Query:   199 XXXXXXXXXXTLMTSGPVVIMAASFSNAAYERLPLEEEE 237
                        L+ SGPVV+MAASF NA ++RLP++++E
Sbjct:   168 GQVVGGGVVGGLIASGPVVLMAASFMNAVFDRLPMDDDE 206

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0010529 "negative regulation of transposition" evidence=IMP

GO:0031490 "chromatin DNA binding" evidence=IDA

GO:0035067 "negative regulation of histone acetylation" evidence=IMP

GO:1900111 "positive regulation of histone H3-K9 dimethylation" evidence=IMP

TAIR|locus:2063469 GIK "GIANT KILLER" [Arabidopsis thaliana (taxid:3702)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 89/166 (53%), Positives = 114/166 (68%)

Query:    76 GSGEGEIT-RRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIADGCDIVESVATFARR 134
             G G G++  RRPRGRPAGSKNKPKPP+I+TR+SAN LR H++E+  GCD+ E ++T+ARR
Sbjct:    69 GGGSGDLVMRRPRGRPAGSKNKPKPPVIVTRESANTLRAHILEVGSGCDVFECISTYARR 128

Query:   135 RQRGVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEIXXXXXXXXXXXXXXXXXXXTIYL 194
             RQRG+C+LSGTGTVTNV++RQP + GA+V+L G FEI                   TI+L
Sbjct:   129 RQRGICVLSGTGTVTNVSIRQPTAAGAVVTLRGTFEILSLSGSFLPPPAPPGATSLTIFL 188

Query:   195 AXXXXXXXXXXXXXTLMTSGPVVIMAASFSNAAYERLPLEEEEGQL 240
             A              LM +GPV++MAASF+N AYERLPL+E E  L
Sbjct:   189 AGAQGQVVGGNVVGELMAAGPVMVMAASFTNVAYERLPLDEHEEHL 234

GO:0005737 "cytoplasm" evidence=ISM

GO:0003677 "DNA binding" evidence=IDA

GO:0003680 "AT DNA binding" evidence=ISS

GO:0005654 "nucleoplasm" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEP

GO:0048440 "carpel development" evidence=IMP

GO:0048653 "anther development" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

TAIR|locus:2084958 AHL19 "AT-hook motif nuclear-localized protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 101/189 (53%), Positives = 122/189 (64%)

Query:    57 DRGDDXXXXXXXEGKELFQGSGEGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVM 116
             +  DD       +  E  +G+ E   TRRPRGRPAGSKNKPKPPI +TRDS NAL++HVM
Sbjct:    54 NNNDDDRDNLSGDDHEPREGAVEAP-TRRPRGRPAGSKNKPKPPIFVTRDSPNALKSHVM 112

Query:   117 EIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQP------ASPG--AIVSLHGR 168
             EIA G D++E++ATFARRRQRG+CILSG GTV NVTLRQP      A+PG  A+++L GR
Sbjct:   113 EIASGTDVIETLATFARRRQRGICILSGNGTVANVTLRQPSTAAVAAAPGGAAVLALQGR 172

Query:   169 FEIXXXXXXXXXXXXXXXXXXXTIYLAXXXXXXXXXXXXXTLMTSGPVVIMAASFSNAAY 228
             FEI                   TIYLA              LM +GPV+++AA+FSNA Y
Sbjct:   173 FEILSLTGSFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLMAAGPVMLIAATFSNATY 232

Query:   229 ERLPLEEEE 237
             ERLPLEEEE
Sbjct:   233 ERLPLEEEE 241

GO:0005737 "cytoplasm" evidence=ISM

GO:0050832 "defense response to fungus" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

TAIR|locus:2101916 AHL18 "AT3G60870" [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 96/162 (59%), Positives = 108/162 (66%)

Query:    77 SGEGEIT-RRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIADGCDIVESVATFARRR 135
             SGE  I  RRPRGRPAGSKNKPK PII+TRDSANA R HVMEI + CD++ES+A FARRR
Sbjct:    51 SGEENIKKRRPRGRPAGSKNKPKAPIIVTRDSANAFRCHVMEITNACDVMESLAVFARRR 110

Query:   136 QRGVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEIXXXXXXXXXXXXXXXXXXXTIYLA 195
             QRGVC+L+G G VTNVT+RQP   G +VSLHGRFEI                    +YLA
Sbjct:   111 QRGVCVLTGNGAVTNVTVRQPG--GGVVSLHGRFEILSLSGSFLPPPAPPAASGLKVYLA 168

Query:   196 XXXXXXXXXXXXXTLMTSGPVVIMAASFSNAAYERLPLEEEE 237
                           L  S PVV+MAASF NA+YERLPLEEEE
Sbjct:   169 GGQGQVIGGSVVGPLTASSPVVVMAASFGNASYERLPLEEEE 210

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

TAIR|locus:2122148 AGF1 "AT4G35390" [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 103/233 (44%), Positives = 128/233 (54%)

Query:    76 GSGEGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIADGCDIVESVATFARRR 135
             GS  G   RRPRGRPAGSKNKPKPP IITRDS N LR+HV+E+  G DI E+V+T+A RR
Sbjct:    58 GSSSG---RRPRGRPAGSKNKPKPPTIITRDSPNVLRSHVLEVTSGSDISEAVSTYATRR 114

Query:   136 QRGVCILSGTGTVTNVTLRQPASP--GAIVSLHGRFEIXXXXXXXXXXXXXXXXXXXTIY 193
               GVCI+SGTG VTNVT+RQPA+P  G +++LHGRF+I                   T+Y
Sbjct:   115 GCGVCIISGTGAVTNVTIRQPAAPAGGGVITLHGRFDILSLTGTALPPPAPPGAGGLTVY 174

Query:   194 LAXXXXXXXXXXXXXTLMTSGPVVIMAASFSNAAYERLPLEEEEGQLPMXXXXXXXXXXX 253
             LA             +L+ SGPVV+MAASF+NA Y+RLP+EEEE   P            
Sbjct:   175 LAGGQGQVVGGNVAGSLIASGPVVLMAASFANAVYDRLPIEEEETPPPRTTGVQQQQPEA 234

Query:   254 XXXXXXXXXXXXX-XXPLMGDANNNGPLFHGLPPNLLNSIQLPT-EAYWATGG 304
                              L G     G  F+ L  N+ N+ Q    + Y  +GG
Sbjct:   235 SQSSEVTGSGAQACESNLQGGNGGGGVAFYNLGMNM-NNFQFSGGDIYGMSGG 286

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009938 "negative regulation of gibberellic acid mediated signaling pathway" evidence=IEP

TAIR|locus:505006460 AHL20 "AT4G14465" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 92/185 (49%), Positives = 119/185 (64%)

Query:    53 GIKLDRGDDXXXXXXXEGKELFQGSGEGEITRRPRGRPAGSKNKPKPPIIITRDSANALR 112
             GI +++  D       + +E   G+ E  + RRPRGRP GSKNKPK PI +TRDS NALR
Sbjct:    40 GIAMNQSQDNDQDEEDDPRE---GAVE-VVNRRPRGRPPGSKNKPKAPIFVTRDSPNALR 95

Query:   113 THVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEIX 172
             +HV+EI+DG D+ +++A F+RRRQRGVC+LSGTG+V NVTLRQ A+PG +VSL GRFEI 
Sbjct:    96 SHVLEISDGSDVADTIAHFSRRRQRGVCVLSGTGSVANVTLRQAAAPGGVVSLQGRFEIL 155

Query:   173 XXXXXXXXXXXXXXXXXXTIYLAXXXXXXXXXXXXXTLMTSGPVVIMAASFSNAAYERLP 232
                               T+YLA              L+  G V+++AA+FSNA YERLP
Sbjct:   156 SLTGAFLPGPSPPGSTGLTVYLAGVQGQVVGGSVVGPLLAIGSVMVIAATFSNATYERLP 215

Query:   233 LEEEE 237
             +EEEE
Sbjct:   216 MEEEE 220

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0042742 "defense response to bacterium" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	308
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	3e-44
cd11378	113	cd11378, DUF296, Domain of unknown function found	5e-34
COG1661	141	COG1661, COG1661, Predicted DNA-binding protein wi	0.001

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score =  146 bits (372), Expect = 3e-44
 Identities = 57/122 (46%), Positives = 73/122 (59%), Gaps = 6/122 (4%)

Query: 111 LRTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQP---ASPGAIVSLHG 167
            R HV+ +  G D+VES+  FAR+R  G  +LSG G V+NVTLRQP   A    +V+L G
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLEG 60

Query: 168 RFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVV-GTLMTSGPVVIMAASFSNA 226
           RFEILSLSG+    P    +  L + LA   GQVVGG +  GT+  +G VV+   SF NA
Sbjct: 61  RFEILSLSGTIS--PGGKPSGHLHVSLADPDGQVVGGHLAEGTVFATGEVVVTELSFENA 118

Query: 227 AY 228
             
Sbjct: 119 RR 120

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score =  119 bits (302), Expect = 5e-34
 Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 5/115 (4%)

Query: 112 RTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPAS---PGAIVSLHGR 168
           R  V+ +  G D+VES+  FAR       +LSG G V+N TLR P         V+  GR
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 169 FEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASF 223
            EILSLSG+  P    P+   L + LA   G+V+GG ++G L  +G V ++    
Sbjct: 61  LEILSLSGNISPDDGKPSG-HLHVSLADSDGRVIGGHLLGAL-VAGTVEVVIGEL 113

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

>gnl|CDD|224575 COG1661, COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 15/116 (12%)

Query: 112 RTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLR---QPASPGAIVSLHGR 168
           R   + +  G D+   +  FA +      +++  G + +  LR           + ++  
Sbjct: 10  RVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEP 69

Query: 169 FEILSLSGSFLPPPAPPAASG----LTIYLAGGQGQVVGGSVV-GTLMTSGPVVIM 219
            E+LSL G+        A       L   L    G  +GG ++ G +  +  V I 
Sbjct: 70  LEVLSLLGNI-------ALDDPFVHLHAALGDENGITLGGHLLEGEVFPTAEVFIR 118

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	308
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.96
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.93
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	87.33

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.96  E-value=3.2e-29  Score=207.91  Aligned_cols=115  Identities=37%  Similarity=0.484  Sum_probs=100.4

Q ss_pred             ccEEEEEecCCCcHHHHHHHHHHHcCCceEEEEeeceeeeEEEcCCC--CCCceEeeecceEEEEeeeeccCCCCCCCCC
Q 021751          111 LRTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPA--SPGAIVSLHGRFEILSLSGSFLPPPAPPAAS  188 (308)
Q Consensus       111 mr~hVIrL~~GeDIvesI~~Farr~~~a~~VLSgiGAVsnVTLr~~~--~~g~~~tleG~FEILSLsGnis~~~~~~~~~  188 (308)
                      ||+|++||++||||+++|++||+++++.+|++||+|+|++|+|++++  ..+.+.+++|+|||+||+|||+..+ .+++.
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~-g~~~~   79 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPED-GKPFV   79 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEET-TEEEE
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCC-CCCcc
Confidence            68999999999999999999999999999999999999999999984  4578999999999999999999843 36789


Q ss_pred             eEEEEEeCCCCcEEceecc-cceeecCcEEEEEeeecCc
Q 021751          189 GLTIYLAGGQGQVVGGSVV-GTLMTSGPVVIMAASFSNA  226 (308)
Q Consensus       189 HLHIsLAg~dGqVvGGHV~-G~LIAAg~V~VVaasF~n~  226 (308)
                      ||||+|++.||+|+||||. |.++++.+|+|+..++.+.
T Consensus        80 HlHisl~~~~g~v~gGHl~~g~v~~t~Ev~i~~~~~~~~  118 (120)
T PF03479_consen   80 HLHISLADPDGQVFGGHLLEGTVFATAEVVITELSGINF  118 (120)
T ss_dssp             EEEEEEE-TTSEEEEEEEEEEEEEEEEEEEEEEETTEEE
T ss_pred             eEEEEEECCCCeEEeeEeCCCEEeEEEEEEEEEecCccc
Confidence            9999999999999999999 8887777777776554443

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.93  E-value=3.7e-25  Score=190.92  Aligned_cols=122  Identities=16%  Similarity=0.250  Sum_probs=112.9

Q ss_pred             CCccEEEEEecCCCcHHHHHHHHHHHcCCceEEEEeeceeeeEEEcCCCC---CCceEeeecceEEEEeeeeccCCCCCC
Q 021751          109 NALRTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPAS---PGAIVSLHGRFEILSLSGSFLPPPAPP  185 (308)
Q Consensus       109 ~~mr~hVIrL~~GeDIvesI~~Farr~~~a~~VLSgiGAVsnVTLr~~~~---~g~~~tleG~FEILSLsGnis~~~~~~  185 (308)
                      ..-|.|++||++|+|+++.|.+||+++++.+++++|+|+|++++|++++.   .|.+++++++||||||.|||+..+   
T Consensus         7 ~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~---   83 (141)
T COG1661           7 SSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD---   83 (141)
T ss_pred             ccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC---
Confidence            34689999999999999999999999999999999999999999999974   489999999999999999999987   


Q ss_pred             CCCeEEEEEeCCCCcEEceecccceeecCcEEEEEeeecCcceeccCCc
Q 021751          186 AASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYERLPLE  234 (308)
Q Consensus       186 ~~~HLHIsLAg~dGqVvGGHV~G~LIAAg~V~VVaasF~n~~yeRlP~e  234 (308)
                      |+.|||++|++++|.++||||++..+.. .+.|++..+....+.|.+++
T Consensus        84 p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~~~~R~~d~  131 (141)
T COG1661          84 PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGELFRREFDP  131 (141)
T ss_pred             CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEccccceeEecCC
Confidence            6999999999999999999999777765 67788889999999999887

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=87.33  E-value=0.26  Score=27.27  Aligned_cols=13  Identities=46%  Similarity=0.851  Sum_probs=4.2

Q ss_pred             CCCCCCCCCCCCC
Q 021751           84 RRPRGRPAGSKNK   96 (308)
Q Consensus        84 rrpRGRPpGSknK   96 (308)
                      +|+||||+.+.+|
T Consensus         1 ~r~RGRP~k~~~~   13 (13)
T PF02178_consen    1 KRKRGRPRKNAKK   13 (13)
T ss_dssp             S--SS--TT----
T ss_pred             CCcCCCCccccCC
Confidence            5899999987654

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	308
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	3e-32
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	1e-26
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	2e-20
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	1e-12
3htn_A	149	Putative DNA binding protein; DUF269 family protei	1e-10
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	1e-09

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score =  115 bits (290), Expect = 3e-32
 Identities = 28/141 (19%), Positives = 59/141 (41%), Gaps = 7/141 (4%)

Query: 96  KPKPPIIITRDSANALRTHVMEIADGCDIVESVATFARRRQ-RGVCILSGTGTVTNVTLR 154
                + ++  +A+  R + + +  G ++   +  F ++ Q R   I   TG++T+V LR
Sbjct: 3   GDPNSMTVSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALR 62

Query: 155 QPASPGAIVSLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLMTSG 214
                 A  SL G FE++SL+G+            L + ++   G ++GG ++       
Sbjct: 63  YA-GQEATTSLTGTFEVISLNGTLELTGE-----HLHLAVSDPYGVMLGGHMMPGCTVRT 116

Query: 215 PVVIMAASFSNAAYERLPLEE 235
            + ++        + R P   
Sbjct: 117 TLELVIGELPALTFSRQPCAI 137

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score =  101 bits (252), Expect = 1e-26
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 7/126 (5%)

Query: 111 LRTHVMEIADGCDIVESVATFARRRQ-RGVCILSGTGTVTNVTLRQPASPGAIVSLHGRF 169
           +    + +  G D+ + +    ++ +     I S  G ++ + +R   S    + +   F
Sbjct: 2   IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPF 60

Query: 170 EILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYE 229
           EILSLSG+            L I +A  QG+V GG ++   + +    +M   +    + 
Sbjct: 61  EILSLSGTLTYQHC-----HLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFT 115

Query: 230 RLPLEE 235
           R     
Sbjct: 116 REFDPN 121

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 85.0 bits (210), Expect = 2e-20
 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 112 RTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLR---QPASPGAIVSLHGR 168
           RT++  + +G +++  +  F ++      I++G GT+ N  +    +      ++ L G 
Sbjct: 10  RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGS 69

Query: 169 FEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAY 228
           +E++SL G+       P      + L   +G V GG +V   +    + +          
Sbjct: 70  YELISLIGNVSLKDGEPFV-HAHVSLGNEEGIVFGGHLVEGEVFVAEIFLQ--ELKGEKI 126

Query: 229 ERLPLE 234
           ER P +
Sbjct: 127 ERKPTK 132

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3 Length = 146

 Score = 63.5 bits (154), Expect = 1e-12
 Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 9/128 (7%)

Query: 112 RTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLR---QPASPGAIVSLHGR 168
           +  ++ +  G D+V  +  F   +      +S  G V +  +    Q         L   
Sbjct: 10  KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEP 69

Query: 169 FEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVV-GTLMTSGPVVIMAASFSNAA 227
            EILSLSG+     + P        L G  G+V GG +    +      V+     S  A
Sbjct: 70  LEILSLSGNVSMKDSKPFCH--IHVLLGKDGEVYGGHLFSAEVFACEVFVL---PLSGEA 124

Query: 228 YERLPLEE 235
            ER   E+
Sbjct: 125 PERAFDEQ 132

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Length = 149

 Score = 57.7 bits (139), Expect = 1e-10
 Identities = 19/128 (14%), Positives = 46/128 (35%), Gaps = 8/128 (6%)

Query: 112 RTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLR---QPASPGAIVSLHGR 168
             +++ I +  +IV+++  F + +      ++G G +  +TLR            +   +
Sbjct: 16  NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQ 75

Query: 169 FEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVV-GTLMTSGPVVIMAASFSNAA 227
            EI +L+G+            L I +       + G ++      +G  V+      +  
Sbjct: 76  MEISNLTGNISSMNEQVYL-HLHITVGRSDYSALAGHLLSAIQNGAGEFVVED---YSER 131

Query: 228 YERLPLEE 235
             R    +
Sbjct: 132 ISRTYNPD 139

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha} Length = 147

 Score = 55.0 bits (132), Expect = 1e-09
 Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 4/126 (3%)

Query: 112 RTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLR--QPASPGAIVSLHGRF 169
             ++M +  G ++++++   AR          G G ++  T               +   
Sbjct: 13  TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNV 72

Query: 170 EILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYE 229
           E+ +++GS       P+       +  G  Q  GG ++G  + +G   I    +     +
Sbjct: 73  EMANMTGSIAWKEGKPSI-HAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYPQRL-D 130

Query: 230 RLPLEE 235
           R    E
Sbjct: 131 RFVDPE 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	308
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.96
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.96
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.96
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.96
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.95
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.93
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	97.37

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.96  E-value=1.2e-28  Score=211.81  Aligned_cols=127  Identities=20%  Similarity=0.394  Sum_probs=111.9

Q ss_pred             eeeCCCCCccEEEEEecCCCcHHHHHHHHHHHcCC-ceEEEEeeceeeeEEEcCCCCCCceEeeecceEEEEeeeeccCC
Q 021751          103 ITRDSANALRTHVMEIADGCDIVESVATFARRRQR-GVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEILSLSGSFLPP  181 (308)
Q Consensus       103 it~~s~~~mr~hVIrL~~GeDIvesI~~Farr~~~-a~~VLSgiGAVsnVTLr~~~~~g~~~tleG~FEILSLsGnis~~  181 (308)
                      ++.++++.+|+|++||++||||+++|++||+++++ ++||++++|+|++|+||+++... +++++|+|||+||+|||++.
T Consensus        10 ~~~~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~   88 (154)
T 2hx0_A           10 VSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT   88 (154)
T ss_dssp             --CCSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT
T ss_pred             eccCCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC
Confidence            34578899999999999999999999999999997 67888999999999999997654 78899999999999999985


Q ss_pred             CCCCCCCeEEEEEeCCCCcEEceeccc-ceeecCcEEEEEeeecCcceeccCCccc
Q 021751          182 PAPPAASGLTIYLAGGQGQVVGGSVVG-TLMTSGPVVIMAASFSNAAYERLPLEEE  236 (308)
Q Consensus       182 ~~~~~~~HLHIsLAg~dGqVvGGHV~G-~LIAAg~V~VVaasF~n~~yeRlP~e~~  236 (308)
                           ..||||+|++.||+|+||||++ .+|. .++.|++.+|.+..|+|++|++-
T Consensus        89 -----~~HlHisl~~~~G~v~GGHL~~g~~V~-~t~Ev~i~~~~~~~~~R~~D~eT  138 (154)
T 2hx0_A           89 -----GEHLHLAVSDPYGVMLGGHMMPGCTVR-TTLELVIGELPALTFSRQPCAIS  138 (154)
T ss_dssp             -----EEEEEEEEECTTSCEEEEEECTTCEEE-EEEEEEEEECTTEEEEEEECTTT
T ss_pred             -----CCEEEEEEECCCCCEEccccCCCCcEE-EEEEEEEEEccCceEEEecCCCC
Confidence                 4999999999999999999996 5665 45667778999999999998763

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.96  E-value=3.2e-28  Score=206.35  Aligned_cols=120  Identities=22%  Similarity=0.363  Sum_probs=106.9

Q ss_pred             CccEEEEEecCCCcHHHHHHHHHHHcCC-ceEEEEeeceeeeEEEcCCCCCCceEeeecceEEEEeeeeccCCCCCCCCC
Q 021751          110 ALRTHVMEIADGCDIVESVATFARRRQR-GVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEILSLSGSFLPPPAPPAAS  188 (308)
Q Consensus       110 ~mr~hVIrL~~GeDIvesI~~Farr~~~-a~~VLSgiGAVsnVTLr~~~~~g~~~tleG~FEILSLsGnis~~~~~~~~~  188 (308)
                      .||+|++||++||||+++|++||+++++ ++||++|+|+|++|+||+++... +++++|+|||+||+|||++.     ..
T Consensus         1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-----~~   74 (142)
T 2p6y_A            1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ-----HC   74 (142)
T ss_dssp             CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS-----CE
T ss_pred             CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC-----CC
Confidence            3899999999999999999999999997 67888999999999999997644 68899999999999999985     59


Q ss_pred             eEEEEEeCCCCcEEceeccc-ceeecCcEEEEEeeecCcceeccCCccc
Q 021751          189 GLTIYLAGGQGQVVGGSVVG-TLMTSGPVVIMAASFSNAAYERLPLEEE  236 (308)
Q Consensus       189 HLHIsLAg~dGqVvGGHV~G-~LIAAg~V~VVaasF~n~~yeRlP~e~~  236 (308)
                      ||||+++|.||+|+||||++ .+|. .++.|++.+|.+..|+|+||++-
T Consensus        75 HlHisl~~~~G~v~GGHl~~g~~V~-~t~Ev~i~~~~~~~~~R~~D~eT  122 (142)
T 2p6y_A           75 HLHIAVADAQGRVWGGHLLEGNLIN-TTAELMIHHYPQHHFTREFDPNT  122 (142)
T ss_dssp             EEEEEEECTTSCEEEEEECTTCEEC-C-EEEEEEECTTEEEEEEEETTT
T ss_pred             EEEEEEECCCCCEEccccCCCCeEE-EEEEEEEEEccCCeEEEeeCCCC
Confidence            99999999999999999986 5664 56667778999999999998763

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.96  E-value=4.7e-29  Score=210.98  Aligned_cols=120  Identities=21%  Similarity=0.366  Sum_probs=107.5

Q ss_pred             cEEEEEecCCCcHHHHHHHHHHHcCCceEEEEeeceeeeEEEcCCCCC---CceEeeecceEEEEeeeeccCCCCCCCCC
Q 021751          112 RTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPASP---GAIVSLHGRFEILSLSGSFLPPPAPPAAS  188 (308)
Q Consensus       112 r~hVIrL~~GeDIvesI~~Farr~~~a~~VLSgiGAVsnVTLr~~~~~---g~~~tleG~FEILSLsGnis~~~~~~~~~  188 (308)
                      |+|++||++||||+++|++||+++++.+|+++++|+|++|+||+++..   |..++++|+|||+||+|||++.++ +++.
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g-~p~~   88 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDG-EPFV   88 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETT-EEEE
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCC-Ccee
Confidence            799999999999999999999999998888899999999999998754   567999999999999999999765 5689


Q ss_pred             eEEEEEeCCCCcEEceecccceeecCcEEEEEeeecCcceeccCCcc
Q 021751          189 GLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYERLPLEE  235 (308)
Q Consensus       189 HLHIsLAg~dGqVvGGHV~G~LIAAg~V~VVaasF~n~~yeRlP~e~  235 (308)
                      ||||+|+|.||+|+||||+...++  +..|++.+|.+..|+|+| ++
T Consensus        89 HlHi~l~~~~G~v~GGHl~~g~v~--t~Ev~i~~~~~~~~~R~~-~e  132 (143)
T 2dt4_A           89 HAHVSLGNEEGIVFGGHLVEGEVF--VAEIFLQELKGEKIERKP-TK  132 (143)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEEEE--EEEEEEEEEEESCCEEBC-CT
T ss_pred             eEEEEEECCCCCEeCCCCCCCceE--EEEEEEEEcCCCeEEEeC-CC
Confidence            999999999999999999966554  445677899999999999 54

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.96  E-value=6.3e-29  Score=210.86  Aligned_cols=122  Identities=20%  Similarity=0.250  Sum_probs=109.9

Q ss_pred             ccEEEEEecCCCcHHHHHHHHHHHcCCceEEEEeeceeeeEEEcCCCCC---CceEeeecceEEEEeeeeccCCCCCCCC
Q 021751          111 LRTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPASP---GAIVSLHGRFEILSLSGSFLPPPAPPAA  187 (308)
Q Consensus       111 mr~hVIrL~~GeDIvesI~~Farr~~~a~~VLSgiGAVsnVTLr~~~~~---g~~~tleG~FEILSLsGnis~~~~~~~~  187 (308)
                      -|+|++||++||||+++|++||+++++.+|+++|+|+|++|+|++++..   |.+++++|+|||+||+|||++.++ +++
T Consensus         9 gr~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg-~p~   87 (146)
T 2h6l_A            9 GKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDS-KPF   87 (146)
T ss_dssp             CEEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETT-EEE
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCC-Cce
Confidence            3699999999999999999999999988777799999999999999764   468999999999999999999765 568


Q ss_pred             CeEEEEEeCCCCcEEceecccceeecCcEEEEEeeecCcceeccCCccc
Q 021751          188 SGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYERLPLEEE  236 (308)
Q Consensus       188 ~HLHIsLAg~dGqVvGGHV~G~LIAAg~V~VVaasF~n~~yeRlP~e~~  236 (308)
                      .||||+|+ .||+|+||||++.+|  .++.|++.+|.+..|+|+||++-
T Consensus        88 ~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~~~~R~~D~et  133 (146)
T 2h6l_A           88 CHIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGEAPERAFDEQT  133 (146)
T ss_dssp             EEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSCCCBEEECTTT
T ss_pred             eeEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCCcEEEeECCCC
Confidence            99999999 999999999997776  46778889999999999998763

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.95  E-value=2.8e-28  Score=208.40  Aligned_cols=121  Identities=15%  Similarity=0.222  Sum_probs=107.1

Q ss_pred             cEEEEEecCCCcHHHHHHHHHHHcCCceEEEEeeceeeeEEEcCCCCC---CceEeeecceEEEEeeeeccCCCCCCCCC
Q 021751          112 RTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPASP---GAIVSLHGRFEILSLSGSFLPPPAPPAAS  188 (308)
Q Consensus       112 r~hVIrL~~GeDIvesI~~Farr~~~a~~VLSgiGAVsnVTLr~~~~~---g~~~tleG~FEILSLsGnis~~~~~~~~~  188 (308)
                      |.|++||++||||+++|++||+++++.+|+++|+|+|++|+|++++..   |..++++|+|||+||+|||++.++ +++.
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG-~p~~   94 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE-QVYL   94 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT-EEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC-CceE
Confidence            899999999999999999999999998888899999999999998653   568899999999999999999765 5789


Q ss_pred             eEEEEEeCCCCcEEceecccceeecCcEEEEEeeecCcceeccCCcc
Q 021751          189 GLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYERLPLEE  235 (308)
Q Consensus       189 HLHIsLAg~dGqVvGGHV~G~LIAAg~V~VVaasF~n~~yeRlP~e~  235 (308)
                      |||++|++.+|+|+||||+...|.. +..|++..+.. .++|.+|++
T Consensus        95 HlH~sl~~~~G~v~gGHl~~g~V~~-t~Ei~i~~~~~-~~~R~~D~~  139 (149)
T 3htn_A           95 HLHITVGRSDYSALAGHLLSAIQNG-AGEFVVEDYSE-RISRTYNPD  139 (149)
T ss_dssp             EEEEEEECTTSBEEEEEEEEEEEEE-EEEEEEEECCS-CCEEEEETT
T ss_pred             EEEEEEECCCCCEEeEEeCCCEEEE-EEEEEEEEcCC-eeEEeeCCc
Confidence            9999999999999999999776643 34456667777 899998875

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.93  E-value=3.3e-26  Score=194.99  Aligned_cols=121  Identities=16%  Similarity=0.200  Sum_probs=105.2

Q ss_pred             cEEEEEecCCCcHHHHHHHHHHHcCCceEEEEeeceeeeEEEcCCCCC---CceEeeecceEEEEeeeeccCCCCCCCCC
Q 021751          112 RTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPASP---GAIVSLHGRFEILSLSGSFLPPPAPPAAS  188 (308)
Q Consensus       112 r~hVIrL~~GeDIvesI~~Farr~~~a~~VLSgiGAVsnVTLr~~~~~---g~~~tleG~FEILSLsGnis~~~~~~~~~  188 (308)
                      |.+++||++|+||+++|.+||+++++..++++++|++++|+|++++..   |...+++ ++||+||+|||++.++ .++.
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG-~p~~   90 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEG-KPSI   90 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETT-EEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCC-CceE
Confidence            789999999999999999999999999999999999999999998753   5667888 8999999999998765 6799


Q ss_pred             eEEEEEeCCCCcEEceecccceeecCcEEEEEeeecCcceeccCCcc
Q 021751          189 GLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYERLPLEE  235 (308)
Q Consensus       189 HLHIsLAg~dGqVvGGHV~G~LIAAg~V~VVaasF~n~~yeRlP~e~  235 (308)
                      |||++++|.+|+|+||||+...|..+++.|++..+. ..++|.+|++
T Consensus        91 HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~-~~~~R~~D~~  136 (147)
T 3hwu_A           91 HAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYP-QRLDRFVDPE  136 (147)
T ss_dssp             EEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEES-SCCBEEEETT
T ss_pred             EEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcC-CeEEEEECCc
Confidence            999999999999999999976776434455555664 5999999775

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=97.37  E-value=8.2e-05  Score=46.78  Aligned_cols=18  Identities=61%  Similarity=1.003  Sum_probs=15.6

Q ss_pred             CCCCCCCCCCCCCCCCCC
Q 021751           81 EITRRPRGRPAGSKNKPK   98 (308)
Q Consensus        81 ~~~rrpRGRPpGSknKpk   98 (308)
                      ...|||||||.|||||.-
T Consensus         2 ptpKrpRgRpkGSKNk~~   19 (26)
T 2ezd_A            2 PTPKRPRGRPKGSKNKGA   19 (26)
T ss_dssp             CSCCCCSSCCTTCCCCSC
T ss_pred             CCCcCCCCCcCcccccCc
Confidence            357999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	308
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	2e-32
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	1e-21

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score =  115 bits (289), Expect = 2e-32
 Identities = 27/130 (20%), Positives = 55/130 (42%), Gaps = 7/130 (5%)

Query: 107 SANALRTHVMEIADGCDIVESVATFARRRQ-RGVCILSGTGTVTNVTLRQPASPGAIVSL 165
           +A+  R + + +  G ++   +  F ++ Q R   I   TG++T+V LR         SL
Sbjct: 2   NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSL 60

Query: 166 HGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSN 225
            G FE++SL+G+            L + ++   G ++GG ++        + ++      
Sbjct: 61  TGTFEVISLNGTLELT-----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPA 115

Query: 226 AAYERLPLEE 235
             + R P   
Sbjct: 116 LTFSRQPCAI 125

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 86.5 bits (214), Expect = 1e-21
 Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 112 RTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLR---QPASPGAIVSLHGR 168
           +  ++ +  G D+V  +  F   +      +S  G V +  +    Q         L   
Sbjct: 10  KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEP 69

Query: 169 FEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAY 228
            EILSLSG+     + P    + + L G  G+V GG +    + +  V ++    S  A 
Sbjct: 70  LEILSLSGNVSMKDSKPFC-HIHVLL-GKDGEVYGGHLFSAEVFACEVFVLP--LSGEAP 125

Query: 229 ERLPLEE 235
           ER   E+
Sbjct: 126 ERAFDEQ 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	308
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.95
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.94

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=3.1e-28  Score=203.33  Aligned_cols=124  Identities=22%  Similarity=0.379  Sum_probs=112.9

Q ss_pred             CCCCccEEEEEecCCCcHHHHHHHHHHHcCC-ceEEEEeeceeeeEEEcCCCCCCceEeeecceEEEEeeeeccCCCCCC
Q 021751          107 SANALRTHVMEIADGCDIVESVATFARRRQR-GVCILSGTGTVTNVTLRQPASPGAIVSLHGRFEILSLSGSFLPPPAPP  185 (308)
Q Consensus       107 s~~~mr~hVIrL~~GeDIvesI~~Farr~~~-a~~VLSgiGAVsnVTLr~~~~~g~~~tleG~FEILSLsGnis~~~~~~  185 (308)
                      +.+..|.|++||++||||+++|.+||+++++ +++|++++|++++|+|++|+. .....++|+|||+||+|||++.+   
T Consensus         2 ~~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~-~~~~~~~g~~Ei~sl~G~I~~~~---   77 (136)
T d2hx0a1           2 NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EATTSLTGTFEVISLNGTLELTG---   77 (136)
T ss_dssp             SCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTC-SSCEEEEEEEEEEEEEEEEETTE---
T ss_pred             CCCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCC-CCcEEecCcEEEEEEEEEeccCC---
Confidence            4678899999999999999999999999996 788999999999999999854 55678999999999999998863   


Q ss_pred             CCCeEEEEEeCCCCcEEceecccceeecCcEEEEEeeecCcceeccCCccc
Q 021751          186 AASGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYERLPLEEE  236 (308)
Q Consensus       186 ~~~HLHIsLAg~dGqVvGGHV~G~LIAAg~V~VVaasF~n~~yeRlP~e~~  236 (308)
                        .|||++|++.+|+|+||||++..+++.++.|++.+|.+..++|.+|++.
T Consensus        78 --~HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l~~~~~~R~~D~~t  126 (136)
T d2hx0a1          78 --EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPCAIS  126 (136)
T ss_dssp             --EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEECTTT
T ss_pred             --CeEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEccCCceEEccCCCC
Confidence              7999999999999999999987777788899999999999999997764

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.94  E-value=1.8e-27  Score=197.75  Aligned_cols=122  Identities=20%  Similarity=0.259  Sum_probs=108.0

Q ss_pred             ccEEEEEecCCCcHHHHHHHHHHHcCCceEEEEeeceeeeEEEcCCCCC---CceEeeecceEEEEeeeeccCCCCCCCC
Q 021751          111 LRTHVMEIADGCDIVESVATFARRRQRGVCILSGTGTVTNVTLRQPASP---GAIVSLHGRFEILSLSGSFLPPPAPPAA  187 (308)
Q Consensus       111 mr~hVIrL~~GeDIvesI~~Farr~~~a~~VLSgiGAVsnVTLr~~~~~---g~~~tleG~FEILSLsGnis~~~~~~~~  187 (308)
                      -|.|++||++||||+++|++||+++++.+|+++++|++++|+|++++..   |..+.++|++||+||+|||...++ +++
T Consensus         9 gr~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g-~p~   87 (138)
T d2h6la1           9 GKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDS-KPF   87 (138)
T ss_dssp             CEEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETT-EEE
T ss_pred             CCEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCC-CcE
Confidence            3899999999999999999999999999999999999999999987643   678899999999999999998876 468


Q ss_pred             CeEEEEEeCCCCcEEceecccceeecCcEEEEEeeecCcceeccCCccc
Q 021751          188 SGLTIYLAGGQGQVVGGSVVGTLMTSGPVVIMAASFSNAAYERLPLEEE  236 (308)
Q Consensus       188 ~HLHIsLAg~dGqVvGGHV~G~LIAAg~V~VVaasF~n~~yeRlP~e~~  236 (308)
                      .|+|+++++ +|+++||||+...+.+.+  +++.++.+..++|.+|++.
T Consensus        88 ~HlH~~~~~-~g~~~gGHl~~~~v~~~e--~~i~~~~~~~~~R~~D~~t  133 (138)
T d2h6la1          88 CHIHVLLGK-DGEVYGGHLFSAEVFACE--VFVLPLSGEAPERAFDEQT  133 (138)
T ss_dssp             EEEEEEEEE-BTEEEEEEEEEEEEEEEE--EEEEECBSCCCBEEECTTT
T ss_pred             EEEEEEECC-CCCEEEEEeCccEEEEEE--EEEEEecCCceEEecCCcc
Confidence            999999997 799999999987776544  4444799999999997753