Citrus Sinensis ID: 021783

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
Protein Sequence
MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL
Secondary Structure (PSIPRED)
ccHHHHHHHccccccEEEEcccccccHHHHHHHHccccccEEEEEccccHHHHHHHccccccEEEEEccccccccHHcHHHHHHHHHHcccEEEEEcccccccccccccccccEEEEccccccccccHHHccEEEEccHHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccEEEccccccccccHHHHHHcccccEEEEEEEccHHHHHHHHHHcccEEEEEccccHHHHHccccccccccccHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
HHHHHHHHcccccccEEEEEccccHHHHHHHHHcHHHHccEEEEEccccHHHHHHHccccccEEEEEcccccccccccHHHHHHHHHccccEEEEEccccccccccHHHHcccEEEEEcccccccccccccEEEEEccHHHHHHHHHHHHHcccEccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccHHHHcccccccccEEEEEcccHHHHHHHHHHccccEEcccccccccEEEccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MAALAAVTHLLGtgeeivagddlyggtdrllsrvtpktGVVVKRVntcdldevasaigpwtklvwvesptnprqqiCDIRKIAEMAHAHGALLLvdnsimspvlsrplelgADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQnaegsglapfdcwiCLRGVKTMALRVEKQQDNAQKIAEFLAShprvkkvnyaglpehpghelhysqakgagSVLSFLTGSLALSKHVVETTKYFSITVSfgsvkslismpcfmshasipvEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL
Flexible Loop (DISEMBL)
MAALAAVTHllgtgeeivaGDDLYGGTDRllsrvtpktgvvvkrvntcdldevasaigpwtklvwvesptnPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIsvgiedvndlisdldkalrtgpl
Low Complexity Region (SEG)
MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL
Disordered region (IsUnstruct)
***LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ**NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD**********
Disordered Region (DISOPRED)
MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP*
Disordered Region (DISEMBL)
MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL
Disordered Region (DISPRO)
MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	307	2.2.26 [Sep-21-2011]
P53780	464	Cystathionine beta-lyase,	yes	no	1.0	0.661	0.846	1e-156
O94350	390	Cystathionine beta-lyase	yes	no	0.977	0.769	0.518	1e-83
Q55DV9	387	Cystathionine gamma-lyase	yes	no	0.983	0.780	0.468	7e-82
O31632	390	Cystathionine beta-lyase	yes	no	0.986	0.776	0.468	1e-79
A2RM21	380	Cystathionine beta-lyase	yes	no	0.983	0.794	0.460	5e-77
P0A4K2	380	Cystathionine beta-lyase	yes	no	0.983	0.794	0.460	5e-77
O05394	379	Cystathionine gamma-lyase	no	no	0.986	0.799	0.458	1e-76
P0C2T9	380	Cystathionine beta-lyase	N/A	no	0.983	0.794	0.457	1e-74
Q8VCN5	398	Cystathionine gamma-lyase	yes	no	0.986	0.761	0.442	3e-74
Q19QT7	405	Cystathionine gamma-lyase	yes	no	0.986	0.748	0.439	5e-74

>sp|P53780|METC_ARATH Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1

 Score =  552 bits (1423), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 260/307 (84%), Positives = 289/307 (94%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           MAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVVVKRVNT  LDEVA+AIGP 
Sbjct: 158 MAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQ 217

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMSPVLSRPLELGADIVMHSAT
Sbjct: 218 TKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSAT 277

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           KFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDCW+CLRG+KTMALR+EKQQ+
Sbjct: 278 KFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQE 337

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
           NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGSV SF+TGS+ALSKH+VETT
Sbjct: 338 NARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETT 397

Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
           KYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDLVRIS GIEDV+DLISDLD 
Sbjct: 398 KYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDI 457

Query: 301 ALRTGPL 307
           A +T PL
Sbjct: 458 AFKTFPL 464

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 4EC: .EC: 1EC: .EC: 8

>sp|O94350|CBL_SCHPO Cystathionine beta-lyase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=str3 PE=3 SV=4

 Score =  310 bits (793), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 158/305 (51%), Positives = 215/305 (70%), Gaps = 5/305 (1%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           M+AL  +     +   +VAG DLYGG+DRLLS    + G  V  V+T DL    +A+ P 
Sbjct: 80  MSALDMILRCCKSNSHVVAGHDLYGGSDRLLSFNQRQYGFKVDNVDTSDLAAFEAALRPD 139

Query: 61  TKLVWVESPTNPRQQICDIRKIAEM--AHAHGALLLVDNSIMSPVLSRPLELGADIVMHS 118
           T LV +ESPTNPR  ICDIR I ++  + A  ALL++DN+++SPVL  PL+ G DIV  S
Sbjct: 140 TNLVLIESPTNPRISICDIRAIVKITRSKAKDALLVMDNTMLSPVLCNPLDFGYDIVYES 199

Query: 119 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 178
           ATK+++GH D+M GV+A K + +AK ++F  NA G+ +APF+C++ LRG+KTM LRVE+ 
Sbjct: 200 ATKYLSGHHDLMGGVIATKSDEIAKSVFFNINAMGAAMAPFECFLLLRGIKTMGLRVERA 259

Query: 179 QDNAQKIAEFLASHPRVKKVNYAGL-PEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVV 237
           Q NA +IA+FL S  +  +VN+ GL P+     + YS A+G G+V+S  TG + +SK +V
Sbjct: 260 QQNAIEIAKFLKS--KGLQVNFPGLDPDAKSTAIFYSFARGPGAVMSVFTGDVEVSKTIV 317

Query: 238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD 297
            TTK F I+VSFG+V SLISMP +MSHASI  EVR ARGL+EDL+RI VGIE+V+DL +D
Sbjct: 318 NTTKLFEISVSFGAVNSLISMPAYMSHASIKKEVRDARGLSEDLIRICVGIENVDDLKAD 377

Query: 298 LDKAL 302
           L+ AL
Sbjct: 378 LENAL 382

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|Q55DV9|CGL_DICDI Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=1 SV=1

 Score =  303 bits (777), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 142/303 (46%), Positives = 206/303 (67%), Gaps = 1/303 (0%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           +A L  +THLL +G+E+++ DD+YGGT R  +RV     +    V+   LD++ +A    
Sbjct: 82  LATLTTITHLLKSGDEVISIDDVYGGTRRYFTRVAANFDLKFSFVDLSTLDDLKNAFTDK 141

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           T+LVW+E+PTNP  ++ DI+ +A+  H+ GA L+VDN+ MSP    PL+LGADIVMHS T
Sbjct: 142 TRLVWIETPTNPLLKVADIKAVADYVHSRGATLVVDNTFMSPYFQNPLDLGADIVMHSVT 201

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           K+I GHSD + GVLA   + L  +L FLQN+ G+  +PFDC++ LRG+KT+ +R+E  Q 
Sbjct: 202 KYINGHSDCVMGVLATNNDELYAKLKFLQNSIGAVPSPFDCFLALRGLKTLHVRMEAHQK 261

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG-AGSVLSFLTGSLALSKHVVET 239
           NA  I  FL  HP+V++V Y GLP HP HE+   Q KG  G V+ F+ GS+  S+  +E 
Sbjct: 262 NAFAICNFLEKHPKVERVIYPGLPSHPQHEICKRQMKGYGGMVVFFVKGSIDQSRSFLEN 321

Query: 240 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD 299
            K F++  S G V+SLI +P  M+HAS+P E R   G+++ L+R+SVGIED+NDL++D+ 
Sbjct: 322 IKLFALAESLGGVESLIELPSVMTHASVPAEERAKLGISDTLIRLSVGIEDINDLLADIS 381

Query: 300 KAL 302
           +AL
Sbjct: 382 QAL 384

Dictyostelium discoideum (taxid: 44689)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|O31632|METC_BACSU Cystathionine beta-lyase MetC OS=Bacillus subtilis (strain 168) GN=metC PE=1 SV=1

 Score =  296 bits (759), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 142/303 (46%), Positives = 208/303 (68%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           MAA++    LL  G+ ++  +D+YGGT R+++ V  + G+    V+  D +EVA +I P 
Sbjct: 80  MAAISTAFLLLSQGDHVLVTEDVYGGTFRMVTEVLTRFGIEHTFVDMTDRNEVARSIKPN 139

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TK++++E+P+NP   I DI+ + ++A  +G L  +DN+ M+P L RPL+LG DIV+HSAT
Sbjct: 140 TKVIYMETPSNPTLGITDIKAVVQLAKENGCLTFLDNTFMTPALQRPLDLGVDIVLHSAT 199

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           KF++GHSDV++G+ AVK E L K+LY LQNA G+ L   DCW+ LRG+KT+ +R+EK   
Sbjct: 200 KFLSGHSDVLSGLAAVKDEELGKQLYKLQNAFGAVLGVQDCWLVLRGLKTLQVRLEKASQ 259

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
            AQ++AEF   HP VK+V Y GL +HPG E H SQ+ GAG+VLSF   S    K +VE  
Sbjct: 260 TAQRLAEFFQKHPAVKRVYYPGLADHPGAETHKSQSTGAGAVLSFELESKEAVKKLVENV 319

Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
                 VS G+V+S++S P  MSHA++P E R+ RG+T+ L+R+SVG+E  +DL  D ++
Sbjct: 320 SLPVFAVSLGAVESILSYPATMSHAAMPKEEREKRGITDGLLRLSVGVEHADDLEHDFEQ 379

Query: 301 ALR 303
           AL+
Sbjct: 380 ALK 382

Catalyzes the transformation of cystathionine into homocysteine. Also exhibits cysteine desulfhydrase activity in vitro, producing sulfide from cysteine.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|A2RM21|METC_LACLM Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1

 Score =  288 bits (736), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 140/304 (46%), Positives = 204/304 (67%), Gaps = 2/304 (0%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           +A + AV  L   G+ I+  DD+YGGT RL+ +V  KTG++   V+  +LD++ +A    
Sbjct: 76  LAGIHAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTGIIYDLVDLSNLDDLKAAFKEE 135

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TK ++ E+P+NP  ++ DI++I+ +A AH AL LVDN+  +P L +P+ LGADIV+HSAT
Sbjct: 136 TKAIYFETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQPIALGADIVLHSAT 195

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           K++ GHSDV+AG++    + LA E+ FLQN+ G+ L P D W+  RG+KT+ALR+E    
Sbjct: 196 KYLGGHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQRGIKTLALRMEAHSA 255

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVET 239
           NAQKIAEFL +   V KV Y GL  HPGHE+   Q    G ++SF LT   A+ K  VE 
Sbjct: 256 NAQKIAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMSAFGGMISFELTDENAV-KDFVEN 314

Query: 240 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD 299
             YF++  S G V+SLI +P  M+HASIP E+R+  G+ + L+R+SVG+E + DL++D+ 
Sbjct: 315 LSYFTLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEAIEDLLTDIK 374

Query: 300 KALR 303
           +AL 
Sbjct: 375 EALE 378

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. cremoris (strain MG1363) (taxid: 416870)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|P0A4K2|METC_LACLA Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=metC PE=3 SV=1

 Score =  288 bits (736), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 140/304 (46%), Positives = 204/304 (67%), Gaps = 2/304 (0%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           +A + AV  L   G+ I+  DD+YGGT RL+ +V  KTG++   V+  +LD++ +A    
Sbjct: 76  LAGIHAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTGIIYDLVDLSNLDDLKAAFKEE 135

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TK ++ E+P+NP  ++ DI++I+ +A AH AL LVDN+  +P L +P+ LGADIV+HSAT
Sbjct: 136 TKAIYFETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQPIALGADIVLHSAT 195

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           K++ GHSDV+AG++    + LA E+ FLQN+ G+ L P D W+  RG+KT+ALR+E    
Sbjct: 196 KYLGGHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQRGIKTLALRMEAHSA 255

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVET 239
           NAQKIAEFL +   V KV Y GL  HPGHE+   Q    G ++SF LT   A+ K  VE 
Sbjct: 256 NAQKIAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMSAFGGMISFELTDENAV-KDFVEN 314

Query: 240 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD 299
             YF++  S G V+SLI +P  M+HASIP E+R+  G+ + L+R+SVG+E + DL++D+ 
Sbjct: 315 LSYFTLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEAIEDLLTDIK 374

Query: 300 KALR 303
           +AL 
Sbjct: 375 EALE 378

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. lactis (strain IL1403) (taxid: 272623)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|O05394|MCCB_BACSU Cystathionine gamma-lyase OS=Bacillus subtilis (strain 168) GN=mccB PE=1 SV=1

 Score =  286 bits (732), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 139/303 (45%), Positives = 200/303 (66%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           MAA+ AV  L  +G+ +V  DD+YGGT R++++V  + G+    V+T   +EV  AI P 
Sbjct: 75  MAAITAVMMLFNSGDHVVLTDDVYGGTYRVMTKVLNRLGIESTFVDTSSREEVEKAIRPN 134

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TK +++E+PTNP  +I D+  +A++A   G LL+VDN+  +P   +PL LGADIV+HSAT
Sbjct: 135 TKAIYIETPTNPLLKITDLTLMADIAKKAGVLLIVDNTFNTPYFQQPLTLGADIVLHSAT 194

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           K++ GHSDV+ G++    + L +EL+F+QN+ G  L P D W+ +RG+KT+ LR+E    
Sbjct: 195 KYLGGHSDVVGGLVVTASKELGEELHFVQNSTGGVLGPQDSWLLMRGIKTLGLRMEAIDQ 254

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
           NA+KIA FL +HP V+ + Y G   HPGHEL  +Q  G G ++SF  GS       +   
Sbjct: 255 NARKIASFLENHPAVQTLYYPGSSNHPGHELAKTQGAGFGGMISFDIGSEERVDAFLGNL 314

Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
           K F+I  S G+V+SLIS+P  M+HASIP E R   G+T+ L+RISVGIED  DL+ D+ +
Sbjct: 315 KLFTIAESLGAVESLISVPARMTHASIPRERRLELGITDGLIRISVGIEDAEDLLEDIGQ 374

Query: 301 ALR 303
           AL 
Sbjct: 375 ALE 377

Catalyzes the conversion of cystathionine to cysteine, and homocysteine to sulfide.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

>sp|P0C2T9|METC_LACLC Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1

 Score =  280 bits (716), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 139/304 (45%), Positives = 203/304 (66%), Gaps = 2/304 (0%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           +A + AV  L   G+ I+  DD+YGGT RL+ +V  KTG++   V+  +L+++ +A    
Sbjct: 76  LAGIHAVLSLFSAGDHIILADDVYGGTFRLVDKVLTKTGIIYDLVDLSNLEDLKAAFKAE 135

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TK V+ E+P+NP  ++ DI++I+ +A AH AL LVDN+  +P L +P+ LGADIV+HSAT
Sbjct: 136 TKAVYFETPSNPLLKVLDIKEISSIAKAHNALTLVDNTFATPYLQQPIALGADIVLHSAT 195

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           K++ GHSDV+AG++      LA E+ FLQN+ G+ L P D W+  RG+KT+A R+E    
Sbjct: 196 KYLGGHSDVVAGLVTTNSNELAIEIGFLQNSIGAVLGPQDSWLVQRGIKTLAPRMEAHSA 255

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVET 239
           NAQKIAEFL +   V KV Y GL  H GHE+   Q    G ++SF LT   A+ K+ VE 
Sbjct: 256 NAQKIAEFLEASQAVSKVYYPGLVNHEGHEIAKKQMTAFGGMISFELTDENAV-KNFVEN 314

Query: 240 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD 299
            +YF++  S G V+SLI +P  M+HASIP E+R+  G+ + L+R+SVG+E + DL++DL 
Sbjct: 315 LRYFTLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEALEDLLTDLK 374

Query: 300 KALR 303
           +AL 
Sbjct: 375 EALE 378

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. cremoris (taxid: 1359)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|Q8VCN5|CGL_MOUSE Cystathionine gamma-lyase OS=Mus musculus GN=Cth PE=1 SV=1

 Score =  278 bits (712), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 135/305 (44%), Positives = 199/305 (65%), Gaps = 2/305 (0%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           +AA   +THLL  G+EI+  D++YGGT+R   RV  + G+ +  V+      + +AI P 
Sbjct: 90  LAATITITHLLKAGDEIICMDEVYGGTNRYFRRVASEFGLKISFVDCSKTKLLEAAITPQ 149

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV-DNSIMSPVLSRPLELGADIVMHSA 119
           TKLVW+E+PTNP  ++ DI   A++ H  G ++LV DN+ MS    RPL LGADI M SA
Sbjct: 150 TKLVWIETPTNPTLKLADIGACAQIVHKRGDIILVVDNTFMSAYFQRPLALGADICMCSA 209

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           TK++ GHSDV+ G+++V  + L   L FLQN+ G+  +PFDC++C RG+KT+ +R+EK  
Sbjct: 210 TKYMNGHSDVVMGLVSVNSDDLNSRLRFLQNSLGAVPSPFDCYLCCRGLKTLQVRMEKHF 269

Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVE 238
            N   +A FL ++PRV+KV Y GLP HP HEL   Q  G   ++SF + G+L  +K  ++
Sbjct: 270 KNGMAVARFLETNPRVEKVVYPGLPSHPQHELAKRQCSGCPGMVSFYIKGALQHAKAFLK 329

Query: 239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL 298
             K F++  S G  +SL  +P  M+HAS+P + R   G+ + L+R+SVG+ED  DL+ DL
Sbjct: 330 NLKLFTLAESLGGYESLAELPAIMTHASVPEKDRATLGINDTLIRLSVGLEDEQDLLEDL 389

Query: 299 DKALR 303
           D+AL+
Sbjct: 390 DRALK 394

Catalyzes the last step in the trans-sulfuration pathway from methionine to cysteine. Has broad substrate specificity. Converts cystathionine to cysteine, ammonia and 2-oxobutanoate. Converts two cysteine molecules to lanthionine and hydrogen sulfide. Can also accept homocysteine as substrate. Specificity depends on the levels of the endogenous substrates. Generates the endogenous signaling molecule hydrogen sulfide (H2S), and so contributes to the regulation of blood pressure. Acts as a cysteine-protein sulfhydrase by mediating sulfhydration of target proteins: sulfhydration consists of converting -SH groups into -SSH on specific cysteine residues of target proteins such as GAPDH, PTPN1 and NF-kappa-B subunit RELA, thereby regulating their function.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|Q19QT7|CGL_PIG Cystathionine gamma-lyase OS=Sus scrofa GN=CTH PE=2 SV=1

 Score =  278 bits (710), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 134/305 (43%), Positives = 202/305 (66%), Gaps = 2/305 (0%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           +AA   +THLL  G +I++ DD+YGGT+R   +V  + G+ +  V+      + +AI P 
Sbjct: 91  LAATVTITHLLKAGXQIISMDDVYGGTNRYFRQVAAEFGLKISFVDCSKSKLLEAAITPE 150

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV-DNSIMSPVLSRPLELGADIVMHSA 119
           TKLVW+E+PTNP  ++ DI   A++ H HG ++LV DN+ MS    RPL LGADI M+SA
Sbjct: 151 TKLVWIETPTNPILKMIDIEACAQIVHKHGDIILVVDNTFMSAYFQRPLALGADICMYSA 210

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           TK++ GHSDV+ G++++  E L   L FLQN+ G+  +P DC++C RG+KT+ +R+EK  
Sbjct: 211 TKYMNGHSDVVMGLVSLNSETLHSRLRFLQNSLGAVPSPIDCYLCNRGLKTLQVRMEKHF 270

Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVE 238
           +N   +A+FL SHP V+KV Y GLP HP HEL   Q  G   ++SF + GSL  ++  ++
Sbjct: 271 ENGMAVAQFLESHPLVEKVIYPGLPSHPQHELAKRQCTGCPGMISFYIKGSLHHAETFLK 330

Query: 239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL 298
           + K F++  S G  +SL  +P  M+H+S+P   R+  G+ + L+R+SVG+ED  DL+ DL
Sbjct: 331 SLKLFTLAESLGGYESLAELPAIMTHSSVPKSDREVLGIRDTLIRLSVGLEDKQDLMDDL 390

Query: 299 DKALR 303
           D+AL+
Sbjct: 391 DQALK 395

Catalyzes the last step in the trans-sulfuration pathway from methionine to cysteine. Has broad substrate specificity. Converts cystathionine to cysteine, ammonia and 2-oxobutanoate. Converts two cysteine molecules to lanthionine and hydrogen sulfide. Can also accept homocysteine as substrate. Specificity depends on the levels of the endogenous substrates. Generates the endogenous signaling molecule hydrogen sulfide (H2S), and so contributes to the regulation of blood pressure. Acts as a cysteine-protein sulfhydrase by mediating sulfhydration of target proteins: sulfhydration consists of converting -SH groups into -SSH on specific cysteine residues of target proteins such as GAPDH, PTPN1 and NF-kappa-B subunit RELA, thereby regulating their function.

Sus scrofa (taxid: 9823)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
255543511	467	cystathionine beta-lyase, putative [Rici	0.996	0.655	0.895	1e-162
356571951	467	PREDICTED: cystathionine beta-lyase, chl	1.0	0.657	0.872	1e-159
225441258	466	PREDICTED: cystathionine beta-lyase, chl	0.996	0.656	0.872	1e-157
363806786	468	cystathionine beta-lyase, chloroplastic-	1.0	0.655	0.866	1e-156
449452983	459	PREDICTED: cystathionine beta-lyase, chl	0.996	0.666	0.862	1e-156
449519446	409	PREDICTED: cystathionine beta-lyase, chl	0.996	0.748	0.862	1e-155
15230203	464	cystathionine beta-lyase [Arabidopsis th	1.0	0.661	0.846	1e-155
8439539	471	cystathionine beta-lyase [Solanum tubero	0.996	0.649	0.852	1e-155
30694565	449	cystathionine beta-lyase [Arabidopsis th	1.0	0.683	0.846	1e-154
297820494	449	cystathionine beta-lyase [Arabidopsis ly	1.0	0.683	0.846	1e-154

>gi|255543511|ref|XP_002512818.1| cystathionine beta-lyase, putative [Ricinus communis] gi|223547829|gb|EEF49321.1| cystathionine beta-lyase, putative [Ricinus communis]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 274/306 (89%), Positives = 297/306 (97%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           MAALAAVTHL+ TG+EI+AGDD+YGG+DRLLS+VTPK+GVVVKRVNT +LDEVASAIGPW
Sbjct: 161 MAALAAVTHLVETGQEIIAGDDIYGGSDRLLSQVTPKSGVVVKRVNTSNLDEVASAIGPW 220

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TKLVW+ESPTNPRQQI DIRKIA++AH HGAL+LVDNSIMSPVLS+PLELGADIVMHSAT
Sbjct: 221 TKLVWLESPTNPRQQISDIRKIAKIAHTHGALVLVDNSIMSPVLSQPLELGADIVMHSAT 280

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           KFIAGHSDVMAGVLAVKGERLA++LYFLQNAEGSGLAPFDCWICLRG+KTMALRVEKQQD
Sbjct: 281 KFIAGHSDVMAGVLAVKGERLARDLYFLQNAEGSGLAPFDCWICLRGIKTMALRVEKQQD 340

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
           NAQKIAEFLA+HPRVKKVNYAGLP HPG +LHYSQAKGAGSVLSFLTGSL LSKH+VETT
Sbjct: 341 NAQKIAEFLATHPRVKKVNYAGLPGHPGRDLHYSQAKGAGSVLSFLTGSLELSKHIVETT 400

Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
           KYFSITVSFGSVKSLISMPCFMSHASIP +VR+ARGLTEDL+RISVGIEDVNDLI+DLD 
Sbjct: 401 KYFSITVSFGSVKSLISMPCFMSHASIPADVREARGLTEDLIRISVGIEDVNDLIADLDH 460

Query: 301 ALRTGP 306
           ALRTGP
Sbjct: 461 ALRTGP 466

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571951|ref|XP_003554134.1| PREDICTED: cystathionine beta-lyase, chloroplastic-like [Glycine max]

 Score =  565 bits (1456), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 268/307 (87%), Positives = 292/307 (95%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           MAAL+AV  L+GTGEEIV GDD+YGG+DRLLS+V P+TG+VVKRVNTCDLDEVA+AIG  
Sbjct: 161 MAALSAVVRLVGTGEEIVTGDDVYGGSDRLLSQVVPRTGIVVKRVNTCDLDEVAAAIGLR 220

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TKLVW+ESPTNPR QI DIRKI+EMAH+HGAL+LVDNSIMSPVLS+PLELGADIVMHSAT
Sbjct: 221 TKLVWLESPTNPRLQISDIRKISEMAHSHGALVLVDNSIMSPVLSQPLELGADIVMHSAT 280

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           KFIAGHSD+MAGVLAVKGE+L KE+YFLQNAEGSGLAPFDCW+CLRG+KTMALR+EKQQD
Sbjct: 281 KFIAGHSDIMAGVLAVKGEKLEKEMYFLQNAEGSGLAPFDCWLCLRGIKTMALRIEKQQD 340

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
           NAQKIAEFLASHPRVK+VNYAGLP HPG +LHYSQAKGAGSVLSFLTGSLALSKH+VETT
Sbjct: 341 NAQKIAEFLASHPRVKEVNYAGLPGHPGRDLHYSQAKGAGSVLSFLTGSLALSKHIVETT 400

Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
           KYFSITVSFGSVKSLISMPCFMSHASIP  VR+ARGLTEDLVRISVGIEDVNDLI+DL  
Sbjct: 401 KYFSITVSFGSVKSLISMPCFMSHASIPAAVREARGLTEDLVRISVGIEDVNDLIADLGN 460

Query: 301 ALRTGPL 307
           ALRTGPL
Sbjct: 461 ALRTGPL 467

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441258|ref|XP_002274313.1| PREDICTED: cystathionine beta-lyase, chloroplastic [Vitis vinifera] gi|297739922|emb|CBI30104.3| unnamed protein product [Vitis vinifera]

 Score =  558 bits (1439), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 267/306 (87%), Positives = 288/306 (94%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           MAALAAVTHL+  GEEIVAG+D+YGG+DRLLS+VT K G+VVKRV+T +L+EVASAIGP 
Sbjct: 160 MAALAAVTHLIAPGEEIVAGEDIYGGSDRLLSQVTTKRGIVVKRVDTTNLEEVASAIGPM 219

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TKLVW+ESPTNPR QI DIRKI EMAH HGALLLVDNSIMSPVLS+PLELGADIVMHSAT
Sbjct: 220 TKLVWLESPTNPRLQISDIRKITEMAHTHGALLLVDNSIMSPVLSQPLELGADIVMHSAT 279

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           KFIAGHSDVMAGVLAVKGE LAK+LYFLQNAEGSGLAPFDCWICLRG+KTMALRVEKQQ+
Sbjct: 280 KFIAGHSDVMAGVLAVKGESLAKDLYFLQNAEGSGLAPFDCWICLRGIKTMALRVEKQQE 339

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
           NAQKIAEFL+SHPRVKKVNYAGLP+HPG  LHYSQAKGAGSVLSFLTGSL  SK++VETT
Sbjct: 340 NAQKIAEFLSSHPRVKKVNYAGLPDHPGRSLHYSQAKGAGSVLSFLTGSLEFSKYIVETT 399

Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
           KYFSITVSFGSVKSLISMPCFMSHASIP  VR+ARGLTEDLVRISVGIED+NDLI+DLD 
Sbjct: 400 KYFSITVSFGSVKSLISMPCFMSHASIPAAVREARGLTEDLVRISVGIEDINDLIADLDY 459

Query: 301 ALRTGP 306
           ALRTGP
Sbjct: 460 ALRTGP 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806786|ref|NP_001242026.1| cystathionine beta-lyase, chloroplastic-like [Glycine max] gi|255641003|gb|ACU20781.1| unknown [Glycine max]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 266/307 (86%), Positives = 290/307 (94%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           MAAL+AV  L+GTGEEIVAGDD+ GG+DRLLS+V P+TG+VVKR NTCDL+EVA+AIGP 
Sbjct: 162 MAALSAVVRLVGTGEEIVAGDDVSGGSDRLLSQVVPRTGIVVKRANTCDLNEVAAAIGPK 221

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TKLVW+ESPTNP  QI DI+KI+E+AH+HGAL+LVDNSIMSPVLSRPLELGADIVMHSAT
Sbjct: 222 TKLVWLESPTNPWLQISDIQKISEIAHSHGALVLVDNSIMSPVLSRPLELGADIVMHSAT 281

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           KFIAGHSD+MAGVLAVKGE+L KELYFLQNAEGSGLAPFDCW+CLRG+KTMALR+EKQQD
Sbjct: 282 KFIAGHSDIMAGVLAVKGEKLGKELYFLQNAEGSGLAPFDCWLCLRGIKTMALRIEKQQD 341

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
           NAQKIAEFLASHPRVKKVNYAGLP HPG +LHYSQAKGAGSVLSFLTGSL LSKH+VETT
Sbjct: 342 NAQKIAEFLASHPRVKKVNYAGLPGHPGRDLHYSQAKGAGSVLSFLTGSLELSKHIVETT 401

Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
           KYFSITVSFGSVKS ISMPCFMSHASIP  VR+ARGLTEDLVRISVGIEDVNDLI+DLD 
Sbjct: 402 KYFSITVSFGSVKSPISMPCFMSHASIPAAVREARGLTEDLVRISVGIEDVNDLIADLDN 461

Query: 301 ALRTGPL 307
           ALRTGPL
Sbjct: 462 ALRTGPL 468

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452983|ref|XP_004144238.1| PREDICTED: cystathionine beta-lyase, chloroplastic-like [Cucumis sativus]

 Score =  555 bits (1431), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 264/306 (86%), Positives = 287/306 (93%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           MAAL+AV  L+GTGEEIVAGDD+YGG+DRLLS+V P+ G+VVKRVNT DLDEV+SAIGP 
Sbjct: 153 MAALSAVAQLVGTGEEIVAGDDIYGGSDRLLSQVIPRRGIVVKRVNTSDLDEVSSAIGPL 212

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TKLVW+ESPTNPR QI DIR IA MAH HGAL+LVDNSI+SPVLSRPL+LGADIVMHSAT
Sbjct: 213 TKLVWLESPTNPRLQISDIRTIATMAHKHGALVLVDNSILSPVLSRPLDLGADIVMHSAT 272

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           KFIAGHSDVMAGVLAV+GERLAKELYFLQNAEGSGLAPFDCWICLRG+KT+ALRVEKQQ+
Sbjct: 273 KFIAGHSDVMAGVLAVRGERLAKELYFLQNAEGSGLAPFDCWICLRGIKTLALRVEKQQE 332

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
           NAQKIAEFL +HPRVKKV YAGLP HPG  LHYSQAKGAG+VLSFLTGSLALSKH+VE+T
Sbjct: 333 NAQKIAEFLYTHPRVKKVYYAGLPTHPGRSLHYSQAKGAGAVLSFLTGSLALSKHIVEST 392

Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
           KYFSITVSFGSVKSLISMPCFMSHASIP  VR+ARGLTEDL+RISVGIEDVNDLI+DLD 
Sbjct: 393 KYFSITVSFGSVKSLISMPCFMSHASIPAAVREARGLTEDLIRISVGIEDVNDLIADLDN 452

Query: 301 ALRTGP 306
           ALRTGP
Sbjct: 453 ALRTGP 458

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519446|ref|XP_004166746.1| PREDICTED: cystathionine beta-lyase, chloroplastic-like [Cucumis sativus]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 264/306 (86%), Positives = 287/306 (93%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           MAAL+AV  L+GTGEEIVAGDD+YGG+DRLLS+V P+ G+VVKRVNT DLDEV+SAIGP 
Sbjct: 103 MAALSAVAQLVGTGEEIVAGDDIYGGSDRLLSQVIPRRGIVVKRVNTSDLDEVSSAIGPL 162

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TKLVW+ESPTNPR QI DIR IA MAH HGAL+LVDNSI+SPVLSRPL+LGADIVMHSAT
Sbjct: 163 TKLVWLESPTNPRLQISDIRTIAIMAHKHGALVLVDNSILSPVLSRPLDLGADIVMHSAT 222

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           KFIAGHSDVMAGVLAV+GERLAKELYFLQNAEGSGLAPFDCWICLRG+KT+ALRVEKQQ+
Sbjct: 223 KFIAGHSDVMAGVLAVRGERLAKELYFLQNAEGSGLAPFDCWICLRGIKTLALRVEKQQE 282

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
           NAQKIAEFL +HPRVKKV YAGLP HPG  LHYSQAKGAG+VLSFLTGSLALSKH+VE+T
Sbjct: 283 NAQKIAEFLYTHPRVKKVYYAGLPTHPGRSLHYSQAKGAGAVLSFLTGSLALSKHIVEST 342

Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
           KYFSITVSFGSVKSLISMPCFMSHASIP  VR+ARGLTEDL+RISVGIEDVNDLI+DLD 
Sbjct: 343 KYFSITVSFGSVKSLISMPCFMSHASIPAAVREARGLTEDLIRISVGIEDVNDLIADLDN 402

Query: 301 ALRTGP 306
           ALRTGP
Sbjct: 403 ALRTGP 408

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230203|ref|NP_191264.1| cystathionine beta-lyase [Arabidopsis thaliana] gi|1708993|sp|P53780.1|METC_ARATH RecName: Full=Cystathionine beta-lyase, chloroplastic; Short=CBL; AltName: Full=Beta-cystathionase; AltName: Full=Cysteine lyase; Flags: Precursor gi|13786771|pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana gi|13786772|pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana gi|704397|gb|AAA99176.1| cystathionine beta-lyase [Arabidopsis thaliana] gi|6911875|emb|CAB72175.1| CYSTATHIONINE BETA-LYASE PRECURSOR (CBL) [Arabidopsis thaliana] gi|222423596|dbj|BAH19767.1| AT3G57050 [Arabidopsis thaliana] gi|332646082|gb|AEE79603.1| cystathionine beta-lyase [Arabidopsis thaliana]

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 260/307 (84%), Positives = 289/307 (94%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           MAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVVVKRVNT  LDEVA+AIGP 
Sbjct: 158 MAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQ 217

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMSPVLSRPLELGADIVMHSAT
Sbjct: 218 TKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSAT 277

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           KFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDCW+CLRG+KTMALR+EKQQ+
Sbjct: 278 KFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQE 337

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
           NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGSV SF+TGS+ALSKH+VETT
Sbjct: 338 NARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETT 397

Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
           KYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDLVRIS GIEDV+DLISDLD 
Sbjct: 398 KYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDI 457

Query: 301 ALRTGPL 307
           A +T PL
Sbjct: 458 AFKTFPL 464

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8439539|gb|AAF74980.1|AF082890_1 cystathionine beta-lyase [Solanum tuberosum]

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 261/306 (85%), Positives = 287/306 (93%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           MAALAAVT L+  GEEIVAGDD+YGG+DRLLS+V PK G+VVKRV+T +LDEVAS I PW
Sbjct: 165 MAALAAVTRLVKAGEEIVAGDDIYGGSDRLLSQVVPKAGIVVKRVDTTNLDEVASVIKPW 224

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TKL+W+ESPTNPRQQICDIRKIA++AHAHGAL+LVDNSIMSPVLS PLELGADIVMHSAT
Sbjct: 225 TKLIWLESPTNPRQQICDIRKIAKIAHAHGALVLVDNSIMSPVLSHPLELGADIVMHSAT 284

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           KFI+GHSD+MAGVLAV+GE LAKE+YFLQNAEG+GLAPFDCW+CLRG+KTMALRVEKQQ+
Sbjct: 285 KFISGHSDLMAGVLAVRGESLAKEVYFLQNAEGAGLAPFDCWLCLRGIKTMALRVEKQQE 344

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
           NAQKIAEFL+SHPRVKKVNY GL +HPG  LH+SQA GAGSVLSFLTGSLALSKHV E T
Sbjct: 345 NAQKIAEFLSSHPRVKKVNYPGLLDHPGRSLHFSQATGAGSVLSFLTGSLALSKHVAEAT 404

Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
           KYFSITVSFGSVKSLIS+PCFMSHASIPVEVR+ARGLTEDLVRISVGIEDVNDLI DLD 
Sbjct: 405 KYFSITVSFGSVKSLISLPCFMSHASIPVEVREARGLTEDLVRISVGIEDVNDLIDDLDY 464

Query: 301 ALRTGP 306
           AL+TGP
Sbjct: 465 ALKTGP 470

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694565|ref|NP_850712.1| cystathionine beta-lyase [Arabidopsis thaliana] gi|17381124|gb|AAL36374.1| putative cystathionine beta-lyase precursor CBL [Arabidopsis thaliana] gi|21281081|gb|AAM45099.1| putative cystathionine beta-lyase precursor CBL [Arabidopsis thaliana] gi|332646084|gb|AEE79605.1| cystathionine beta-lyase [Arabidopsis thaliana]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 260/307 (84%), Positives = 289/307 (94%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           MAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVVVKRVNT  LDEVA+AIGP 
Sbjct: 143 MAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQ 202

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMSPVLSRPLELGADIVMHSAT
Sbjct: 203 TKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSAT 262

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           KFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDCW+CLRG+KTMALR+EKQQ+
Sbjct: 263 KFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQE 322

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
           NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGSV SF+TGS+ALSKH+VETT
Sbjct: 323 NARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETT 382

Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
           KYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDLVRIS GIEDV+DLISDLD 
Sbjct: 383 KYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDI 442

Query: 301 ALRTGPL 307
           A +T PL
Sbjct: 443 AFKTFPL 449

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820494|ref|XP_002878130.1| cystathionine beta-lyase [Arabidopsis lyrata subsp. lyrata] gi|297323968|gb|EFH54389.1| cystathionine beta-lyase [Arabidopsis lyrata subsp. lyrata]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 260/307 (84%), Positives = 288/307 (93%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           MAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVVVKRVNT +LDEVA+AIGP 
Sbjct: 143 MAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPR 202

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TKLVW+ESPTNPRQQI DIRKIAEMAHA GAL+LVDNSIMSPVLSRPLELGADIVMHSAT
Sbjct: 203 TKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSAT 262

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           KFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDCW+CLRG+KTMALR+EKQQ+
Sbjct: 263 KFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQE 322

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
           NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGSV SF+TGS+ALSKH+VETT
Sbjct: 323 NARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETT 382

Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
           KYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDLVRIS GIED +DLISDLD 
Sbjct: 383 KYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDADDLISDLDI 442

Query: 301 ALRTGPL 307
           A  T PL
Sbjct: 443 AFNTCPL 449

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
TAIR|locus:2080605	464	CBL "cystathionine beta-lyase"	1.0	0.661	0.846	6.5e-138
UNIPROTKB|G4MSN2	454	MGG_07074 "Cystathionine beta-	0.983	0.665	0.509	6e-80
ASPGD|ASPL0000069608	458	metG [Emericella nidulans (tax	0.977	0.655	0.526	2.6e-79
CGD|CAL0004561	404	orf19.2092 [Candida albicans (	0.986	0.75	0.509	2.7e-77
POMBASE|SPCC11E10.01	390	SPCC11E10.01 "cystathionine be	0.977	0.769	0.518	7.3e-75
DICTYBASE|DDB_G0269122	387	cysA "cystathionine gamma-lyas	0.983	0.780	0.468	4e-74
UNIPROTKB|Q81LL6	377	BAS4268 "Cys/Met metabolism PL	0.983	0.801	0.470	8.6e-72
TIGR_CMR|BA_4600	377	BA_4600 "cystathionine beta-ly	0.983	0.801	0.470	8.6e-72
TIGR_CMR|GSU_0944	377	GSU_0944 "cystathionine beta-l	0.980	0.798	0.445	3.5e-68
UNIPROTKB|B0JYP8	417	CTH "CTH protein" [Bos taurus	0.986	0.726	0.439	4.4e-68

TAIR|locus:2080605 CBL "cystathionine beta-lyase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1350 (480.3 bits), Expect = 6.5e-138, P = 6.5e-138
 Identities = 260/307 (84%), Positives = 289/307 (94%)

Query:     1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
             MAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVVVKRVNT  LDEVA+AIGP 
Sbjct:   158 MAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQ 217

Query:    61 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
             TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMSPVLSRPLELGADIVMHSAT
Sbjct:   218 TKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSAT 277

Query:   121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
             KFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDCW+CLRG+KTMALR+EKQQ+
Sbjct:   278 KFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQE 337

Query:   181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
             NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGSV SF+TGS+ALSKH+VETT
Sbjct:   338 NARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETT 397

Query:   241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
             KYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDLVRIS GIEDV+DLISDLD 
Sbjct:   398 KYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDI 457

Query:   301 ALRTGPL 307
             A +T PL
Sbjct:   458 AFKTFPL 464

GO:0003824 "catalytic activity" evidence=IEA

GO:0004121 "cystathionine beta-lyase activity" evidence=IEA;IMP

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0071266 "'de novo' L-methionine biosynthetic process" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0019279 "L-methionine biosynthetic process from L-homoserine via cystathionine" evidence=TAS

UNIPROTKB|G4MSN2 MGG_07074 "Cystathionine beta-lyase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 156/306 (50%), Positives = 219/306 (71%)

Query:     1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
             M AL  +T LL  G+E++ GDDLYGGT+RLL+ ++   G++V  ++T D+D VA+ +   
Sbjct:   116 MGALDVITRLLRPGDEVITGDDLYGGTNRLLTYLSANQGIIVHHIDTTDIDRVAATVSDK 175

Query:    61 TKLVWVESPTNPRQQICDIRKIAEMAHAHG--ALLLVDNSIMSPVLSRPLELGADIVMHS 118
             T +V +E+PTNP  +I D+  IA  AH     AL++VDN+++SP+L  PL+LGADIV  S
Sbjct:   176 TAMVLLETPTNPLIKIVDVATIARAAHDRNSKALVVVDNTMLSPMLCNPLDLGADIVYES 235

Query:   119 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 178
              TK+++GH D+M+G++A     LA  +YF  NA G GL+P D ++ +RG+KT+A+R+EKQ
Sbjct:   236 GTKYLSGHHDIMSGIVACNDAALADRMYFTVNATGCGLSPNDSFLLMRGIKTLAVRMEKQ 295

Query:   179 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVE 238
             Q NAQ+IAEFL SH    +V Y GL  HP ++LH+S A+GAG+VLSF TG   LS+ +VE
Sbjct:   296 QANAQRIAEFLESHGF--RVRYPGLKSHPQYDLHWSMARGAGAVLSFETGDAELSQRIVE 353

Query:   239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL 298
               + ++I+VSFG V SLISMPC MSHASI  + R+ R + ED++R+ VGIEDV DLI DL
Sbjct:   354 AARLWAISVSFGCVNSLISMPCQMSHASIDAKTRKERQMPEDIIRLCVGIEDVQDLIDDL 413

Query:   299 DKALRT 304
              +AL T
Sbjct:   414 SRALVT 419

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000069608 metG [Emericella nidulans (taxid:162425)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 160/304 (52%), Positives = 220/304 (72%)

Query:     1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
             MAAL  +T LL  G+E+V GDDLYGGT+RLL  ++   G++V  V+T + D+V   +   
Sbjct:   108 MAALDVITRLLRPGDEVVTGDDLYGGTNRLLKYLSTNGGIIVHHVDTTNPDKVKEVLTDK 167

Query:    61 TKLVWVESPTNPRQQICDIRKIAEMAH-AH-GALLLVDNSIMSPVLSRPLELGADIVMHS 118
             T +V +E+PTNP  +I DI  IA  +H A+   L++VDN++MSP+L  PLELGAD+V  S
Sbjct:   168 TAMVLLETPTNPLIKIVDIPTIAAASHEANPNCLVIVDNTMMSPLLLSPLELGADVVYES 227

Query:   119 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 178
              TK+++GH DVMAGV+AV    L + LYF  NA G GL+PFD W+ +RGVKT+ +R+++Q
Sbjct:   228 GTKYLSGHHDVMAGVIAVNDPALGERLYFPINASGCGLSPFDSWLLMRGVKTLKVRMDQQ 287

Query:   179 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVE 238
             Q NAQ+IAEFL SH    KV Y GL  HP ++LH+S A+GAG+VLSF TG +++S+ +V 
Sbjct:   288 QANAQRIAEFLESHGF--KVRYPGLRSHPQYDLHHSMARGAGAVLSFETGDVSVSERIVA 345

Query:   239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL 298
               K ++I+VSFG V SLIS+PC MSHASI  + R+ R + EDL+R+ VGIEDV+DLI DL
Sbjct:   346 NAKLWAISVSFGCVNSLISLPCRMSHASIDAKTRKERAMPEDLIRLCVGIEDVDDLIDDL 405

Query:   299 DKAL 302
              +A+
Sbjct:   406 RRAV 409

GO:0004121 "cystathionine beta-lyase activity" evidence=RCA;IMP;IDA

GO:0006555 "methionine metabolic process" evidence=RCA

GO:0071266 "'de novo' L-methionine biosynthetic process" evidence=IMP

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0019346 "transsulfuration" evidence=IEA

CGD|CAL0004561 orf19.2092 [Candida albicans (taxid:5476)]

 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 157/308 (50%), Positives = 216/308 (70%)

Query:     1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
             M  L  +T LL  G+E++AGDDLYGGT RLL+ ++ K  +V    +T + + + S I   
Sbjct:    79 MGCLDVITRLLKPGDEVIAGDDLYGGTHRLLTYLSKKGDIVAHHYDTTNTELIKSKINNK 138

Query:    61 TKLVWVESPTNPRQQICDIRKIAEMAH-AHGALLLV-DNSIMSPVLSRPLELGADIVMHS 118
             TK++++ESPTNP  ++ D++ IA+ AH A+  +++V DN++MSPVL  PL+LG DI   S
Sbjct:   139 TKMIFLESPTNPLIKVVDVKSIADHAHKANRDIVVVFDNTMMSPVLMTPLDLGVDIQYES 198

Query:   119 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 178
             ATK++ GH D+MAGV+A +   LA++LY++ N+ G GL+PFDCW+  RG+KT+A+RVEKQ
Sbjct:   199 ATKYLNGHHDIMAGVIATRSSSLAEQLYYIINSTGCGLSPFDCWLLSRGLKTLAIRVEKQ 258

Query:   179 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVE 238
             Q N  +IA+FL +     KV Y GL  HP +ELH S   G G+VLSF TGS+ LS+ +VE
Sbjct:   259 QQNCIRIAKFLENIGF--KVRYPGLKSHPQYELHSSMCSGYGAVLSFETGSVRLSEKIVE 316

Query:   239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL 298
              T  F I VSFG V SLISMPC MSHASI  + R+ R   EDL+R+ +GIE+ +DLI DL
Sbjct:   317 NTDIFGIAVSFGCVNSLISMPCKMSHASIDAKTREEREFPEDLIRLCIGIENCDDLIDDL 376

Query:   299 DKAL-RTG 305
              KAL R+G
Sbjct:   377 TKALLRSG 384

GO:0005777 "peroxisome" evidence=IEA

GO:0019346 "transsulfuration" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=IEA

GO:0004121 "cystathionine beta-lyase activity" evidence=IEA

POMBASE|SPCC11E10.01 SPCC11E10.01 "cystathionine beta-lyase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
 Identities = 158/305 (51%), Positives = 214/305 (70%)

Query:     1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
             M+AL  +     +   +VAG DLYGG+DRLLS    + G  V  V+T DL    +A+ P 
Sbjct:    80 MSALDMILRCCKSNSHVVAGHDLYGGSDRLLSFNQRQYGFKVDNVDTSDLAAFEAALRPD 139

Query:    61 TKLVWVESPTNPRQQICDIRKIAEMAH--AHGALLLVDNSIMSPVLSRPLELGADIVMHS 118
             T LV +ESPTNPR  ICDIR I ++    A  ALL++DN+++SPVL  PL+ G DIV  S
Sbjct:   140 TNLVLIESPTNPRISICDIRAIVKITRSKAKDALLVMDNTMLSPVLCNPLDFGYDIVYES 199

Query:   119 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 178
             ATK+++GH D+M GV+A K + +AK ++F  NA G+ +APF+C++ LRG+KTM LRVE+ 
Sbjct:   200 ATKYLSGHHDLMGGVIATKSDEIAKSVFFNINAMGAAMAPFECFLLLRGIKTMGLRVERA 259

Query:   179 QDNAQKIAEFLASHPRVKKVNYAGL-PEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVV 237
             Q NA +IA+FL S  +  +VN+ GL P+     + YS A+G G+V+S  TG + +SK +V
Sbjct:   260 QQNAIEIAKFLKS--KGLQVNFPGLDPDAKSTAIFYSFARGPGAVMSVFTGDVEVSKTIV 317

Query:   238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD 297
              TTK F I+VSFG+V SLISMP +MSHASI  EVR ARGL+EDL+RI VGIE+V+DL +D
Sbjct:   318 NTTKLFEISVSFGAVNSLISMPAYMSHASIKKEVRDARGLSEDLIRICVGIENVDDLKAD 377

Query:   298 LDKAL 302
             L+ AL
Sbjct:   378 LENAL 382

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0005777 "peroxisome" evidence=ISS

GO:0019279 "L-methionine biosynthetic process from L-homoserine via cystathionine" evidence=IC

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

DICTYBASE|DDB_G0269122 cysA "cystathionine gamma-lyase" [Dictyostelium discoideum (taxid:44689)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 142/303 (46%), Positives = 206/303 (67%)

Query:     1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
             +A L  +THLL +G+E+++ DD+YGGT R  +RV     +    V+   LD++ +A    
Sbjct:    82 LATLTTITHLLKSGDEVISIDDVYGGTRRYFTRVAANFDLKFSFVDLSTLDDLKNAFTDK 141

Query:    61 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
             T+LVW+E+PTNP  ++ DI+ +A+  H+ GA L+VDN+ MSP    PL+LGADIVMHS T
Sbjct:   142 TRLVWIETPTNPLLKVADIKAVADYVHSRGATLVVDNTFMSPYFQNPLDLGADIVMHSVT 201

Query:   121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
             K+I GHSD + GVLA   + L  +L FLQN+ G+  +PFDC++ LRG+KT+ +R+E  Q 
Sbjct:   202 KYINGHSDCVMGVLATNNDELYAKLKFLQNSIGAVPSPFDCFLALRGLKTLHVRMEAHQK 261

Query:   181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG-AGSVLSFLTGSLALSKHVVET 239
             NA  I  FL  HP+V++V Y GLP HP HE+   Q KG  G V+ F+ GS+  S+  +E 
Sbjct:   262 NAFAICNFLEKHPKVERVIYPGLPSHPQHEICKRQMKGYGGMVVFFVKGSIDQSRSFLEN 321

Query:   240 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD 299
              K F++  S G V+SLI +P  M+HAS+P E R   G+++ L+R+SVGIED+NDL++D+ 
Sbjct:   322 IKLFALAESLGGVESLIELPSVMTHASVPAEERAKLGISDTLIRLSVGIEDINDLLADIS 381

Query:   300 KAL 302
             +AL
Sbjct:   382 QAL 384

GO:0005615 "extracellular space" evidence=IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0080146 "L-cysteine desulfhydrase activity" evidence=IEA

GO:0044540 "L-cystine L-cysteine-lyase (deaminating)" evidence=IEA

GO:0004123 "cystathionine gamma-lyase activity" evidence=IEA;ISS

GO:0006534 "cysteine metabolic process" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0019344 "cysteine biosynthetic process" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q81LL6 BAS4268 "Cys/Met metabolism PLP-dependent enzyme" [Bacillus anthracis (taxid:1392)]

 Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
 Identities = 142/302 (47%), Positives = 209/302 (69%)

Query:     1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
             MAA+ A   L   G+ ++  DD+YGGT R++++V  + G+    V+T +L+EV  AI P 
Sbjct:    75 MAAITATIMLFSKGDHVILTDDVYGGTYRVITKVLNRFGIEHTFVDTTNLEEVEEAIRPN 134

Query:    61 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
             TK ++VE+PTNP  +I DI+KI+ +A   G L ++DN+ M+P    P+ LGADIV+HSAT
Sbjct:   135 TKAIYVETPTNPLLKITDIKKISTLAKEKGLLTIIDNTFMTPYWQSPISLGADIVLHSAT 194

Query:   121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
             K++ GHSDV+AG++ V   +LA++L+F+QN+ G  L P D ++ LRG+KT+ +R+E+ + 
Sbjct:   195 KYLGGHSDVVAGLVVVNSPQLAEDLHFVQNSTGGILGPQDSFLLLRGLKTLGIRMEEHET 254

Query:   181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
             N++ IAEFL +HP+V KV Y GL  H  HEL   QA G G+++SF   S      V+E  
Sbjct:   255 NSRAIAEFLNNHPKVNKVYYPGLASHQNHELATEQANGFGAIISFDVDSEETLNKVLERL 314

Query:   241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
             +YF++  S G+V+SLIS+P  M+HASIP + R+  G+T+ L+RISVGIED  DLI DL +
Sbjct:   315 QYFTLAESLGAVESLISIPSQMTHASIPADRRKELGITDTLIRISVGIEDGEDLIEDLAQ 374

Query:   301 AL 302
             AL
Sbjct:   375 AL 376

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

TIGR_CMR|BA_4600 BA_4600 "cystathionine beta-lyase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
 Identities = 142/302 (47%), Positives = 209/302 (69%)

Query:     1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
             MAA+ A   L   G+ ++  DD+YGGT R++++V  + G+    V+T +L+EV  AI P 
Sbjct:    75 MAAITATIMLFSKGDHVILTDDVYGGTYRVITKVLNRFGIEHTFVDTTNLEEVEEAIRPN 134

Query:    61 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
             TK ++VE+PTNP  +I DI+KI+ +A   G L ++DN+ M+P    P+ LGADIV+HSAT
Sbjct:   135 TKAIYVETPTNPLLKITDIKKISTLAKEKGLLTIIDNTFMTPYWQSPISLGADIVLHSAT 194

Query:   121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
             K++ GHSDV+AG++ V   +LA++L+F+QN+ G  L P D ++ LRG+KT+ +R+E+ + 
Sbjct:   195 KYLGGHSDVVAGLVVVNSPQLAEDLHFVQNSTGGILGPQDSFLLLRGLKTLGIRMEEHET 254

Query:   181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
             N++ IAEFL +HP+V KV Y GL  H  HEL   QA G G+++SF   S      V+E  
Sbjct:   255 NSRAIAEFLNNHPKVNKVYYPGLASHQNHELATEQANGFGAIISFDVDSEETLNKVLERL 314

Query:   241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
             +YF++  S G+V+SLIS+P  M+HASIP + R+  G+T+ L+RISVGIED  DLI DL +
Sbjct:   315 QYFTLAESLGAVESLISIPSQMTHASIPADRRKELGITDTLIRISVGIEDGEDLIEDLAQ 374

Query:   301 AL 302
             AL
Sbjct:   375 AL 376

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

TIGR_CMR|GSU_0944 GSU_0944 "cystathionine beta-lyase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 134/301 (44%), Positives = 207/301 (68%)

Query:     1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
             MAA+A +  L  +G+ +V  +DLYGGT RL  ++  + G+    V+T D + V  AI P 
Sbjct:    75 MAAIANLLLLFKSGDHLVVTEDLYGGTCRLFDQILVQYGLSFTYVDTSDPEAVRDAIRPE 134

Query:    61 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
             T+ ++VES TNP  ++ DI  ++ +    G L +VDN+ ++P L RPL+LGADI ++S T
Sbjct:   135 TRALFVESLTNPLLKVADIAALSTLCRERGLLCIVDNTFLTPYLLRPLDLGADITVYSGT 194

Query:   121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
             K+++GH+D ++G++ VK   LA+ +YFLQN+ G+ L P D W+ +RG+KT+++R+++QQ+
Sbjct:   195 KYLSGHNDTVSGLVVVKEPALAERVYFLQNSVGAVLGPQDAWLTIRGMKTLSVRLDRQQE 254

Query:   181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
             NA +IAE+LA HPRV +V Y GLP HPGHEL   QA+G G++++F     AL + ++  T
Sbjct:   255 NAGRIAEWLARHPRVPRVFYPGLPGHPGHELLARQARGFGAMIAFEVDDKALVERLLLKT 314

Query:   241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
             +  S   S G V++LI+ P   +HA IP EVR+  G+ + L+R+SVGIED +DLI+DL +
Sbjct:   315 ELISFAESLGGVETLITFPQVQTHADIPPEVRERLGINDVLLRLSVGIEDADDLIADLSR 374

Query:   301 A 301
             A
Sbjct:   375 A 375

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

UNIPROTKB|B0JYP8 CTH "CTH protein" [Bos taurus (taxid:9913)]

 Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
 Identities = 134/305 (43%), Positives = 200/305 (65%)

Query:     1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
             +AA   +THLL  G++I+  DD+YGGT+R   +V  + G+ +  V+      + +AI P 
Sbjct:    91 LAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVATEFGLKISFVDCSKPKLLEAAITPE 150

Query:    61 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV-DNSIMSPVLSRPLELGADIVMHSA 119
             TKLVW+E+PTNP  ++ DI   A   H HG ++LV DN+ MS    RPL LGADI M+SA
Sbjct:   151 TKLVWIETPTNPSLKMIDIEACAHTVHKHGDIILVVDNTFMSAYFQRPLSLGADICMYSA 210

Query:   120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
             TK++ GHSDV+ G++++  E L   L FLQN+ G+  +P DC++C RG+KT+ +R+EK  
Sbjct:   211 TKYMNGHSDVVMGLVSLNSESLHDRLRFLQNSLGAVPSPIDCYLCNRGLKTLQVRMEKHF 270

Query:   180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVE 238
             +N   +A+FL S+P+V+KV Y GLP HP HEL   Q  G  G V  ++ GSL  ++  ++
Sbjct:   271 ENGMAVAQFLESNPQVEKVIYPGLPSHPQHELAKRQCTGCPGMVTFYIKGSLQHAETFLQ 330

Query:   239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL 298
               K F++  S G  +SL  +P  M+HAS+P   R+  G+++ L+R+SVG+ED  DL+ DL
Sbjct:   331 NLKLFTLAESLGGYESLAELPAIMTHASVPKSDREVLGISDTLIRLSVGLEDKQDLLDDL 390

Query:   299 DKALR 303
             D+AL+
Sbjct:   391 DQALK 395

GO:0070814 "hydrogen sulfide biosynthetic process" evidence=IEA

GO:0051289 "protein homotetramerization" evidence=IEA

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0044540 "L-cystine L-cysteine-lyase (deaminating)" evidence=IEA

GO:0044524 "protein sulfhydration" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0018272 "protein-pyridoxal-5-phosphate linkage via peptidyl-N6-pyridoxal phosphate-L-lysine" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004123 "cystathionine gamma-lyase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P53780	METC_ARATH	4, ., 4, ., 1, ., 8	0.8469	1.0	0.6616	yes	no
O94350	CBL_SCHPO	4, ., 4, ., 1, ., 8	0.5180	0.9771	0.7692	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	307
PLN02509	464	PLN02509, PLN02509, cystathionine beta-lyase	0.0
TIGR01329	378	TIGR01329, cysta_beta_ly_E, cystathionine beta-lya	0.0
pfam01053	382	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP	1e-162
cd00614	369	cd00614, CGS_like, CGS_like: Cystathionine gamma-s	1e-153
COG0626	396	COG0626, MetC, Cystathionine beta-lyases/cystathio	1e-136
PRK07671	377	PRK07671, PRK07671, cystathionine beta-lyase; Prov	1e-122
PRK08064	390	PRK08064, PRK08064, cystathionine beta-lyase; Prov	1e-117
PRK07811	388	PRK07811, PRK07811, cystathionine gamma-synthase;	1e-112
PRK06176	380	PRK06176, PRK06176, cystathionine gamma-synthase/c	1e-105
PRK08247	366	PRK08247, PRK08247, cystathionine gamma-synthase;	1e-100
PRK08133	390	PRK08133, PRK08133, O-succinylhomoserine sulfhydry	1e-100
COG2873	426	COG2873, MET17, O-acetylhomoserine sulfhydrylase [	2e-96
TIGR01325	381	TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sul	2e-95
TIGR02080	382	TIGR02080, O_succ_thio_ly, O-succinylhomoserine (t	6e-95
PRK08249	398	PRK08249, PRK08249, cystathionine gamma-synthase;	1e-90
PRK06234	400	PRK06234, PRK06234, methionine gamma-lyase; Provis	2e-89
TIGR01328	391	TIGR01328, met_gam_lyase, methionine gamma-lyase	1e-86
PRK08574	385	PRK08574, PRK08574, cystathionine gamma-synthase;	7e-85
PRK08045	386	PRK08045, PRK08045, cystathionine gamma-synthase;	9e-85
PRK07503	403	PRK07503, PRK07503, methionine gamma-lyase; Provis	6e-83
TIGR01326	418	TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase	2e-82
PRK07269	364	PRK07269, PRK07269, cystathionine gamma-synthase;	3e-81
PRK08861	388	PRK08861, PRK08861, cystathionine gamma-synthase;	4e-81
PRK06767	386	PRK06767, PRK06767, methionine gamma-lyase; Provis	9e-80
PRK08776	405	PRK08776, PRK08776, cystathionine gamma-synthase;	1e-78
PRK08134	433	PRK08134, PRK08134, O-acetylhomoserine aminocarbox	2e-76
PRK07810	403	PRK07810, PRK07810, O-succinylhomoserine sulfhydry	5e-76
PRK07812	436	PRK07812, PRK07812, O-acetylhomoserine aminocarbox	1e-75
PRK08248	431	PRK08248, PRK08248, O-acetylhomoserine aminocarbox	1e-72
PRK05994	427	PRK05994, PRK05994, O-acetylhomoserine aminocarbox	1e-72
PRK07504	398	PRK07504, PRK07504, O-succinylhomoserine sulfhydry	4e-72
PRK06460	376	PRK06460, PRK06460, hypothetical protein; Provisio	5e-72
PRK07582	366	PRK07582, PRK07582, cystathionine gamma-lyase; Val	1e-68
PRK07049	427	PRK07049, PRK07049, methionine gamma-lyase; Valida	2e-67
PRK06084	425	PRK06084, PRK06084, O-acetylhomoserine aminocarbox	2e-64
PRK06434	384	PRK06434, PRK06434, cystathionine gamma-lyase; Val	5e-64
PRK05613	437	PRK05613, PRK05613, O-acetylhomoserine aminocarbox	2e-59
PRK05939	397	PRK05939, PRK05939, hypothetical protein; Provisio	3e-59
PRK05968	389	PRK05968, PRK05968, hypothetical protein; Provisio	2e-55
PRK05967	395	PRK05967, PRK05967, cystathionine beta-lyase; Prov	4e-49
TIGR01324	377	TIGR01324, cysta_beta_ly_B, cystathionine beta-lya	4e-47
PRK09028	394	PRK09028, PRK09028, cystathionine beta-lyase; Prov	1e-45
PRK07050	394	PRK07050, PRK07050, cystathionine beta-lyase; Prov	3e-45
PRK06702	432	PRK06702, PRK06702, O-acetylhomoserine aminocarbox	8e-44
PLN02242	418	PLN02242, PLN02242, methionine gamma-lyase	5e-40
PRK08114	395	PRK08114, PRK08114, cystathionine beta-lyase; Prov	7e-37
COG0520	405	COG0520, csdA, Selenocysteine lyase/Cysteine desul	8e-11
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	8e-08
cd06453	373	cd06453, SufS_like, Cysteine desulfurase (SufS)-li	3e-07
pfam00266	370	pfam00266, Aminotran_5, Aminotransferase class-V	3e-07
TIGR01976	397	TIGR01976, am_tr_V_VC1184, cysteine desulfurase fa	4e-07
PRK00451	447	PRK00451, PRK00451, glycine dehydrogenase subunit	7e-07
cd00615	294	cd00615, Orn_deC_like, Ornithine decarboxylase fam	1e-06
COG0403	450	COG0403, GcvP, Glycine cleavage system protein P (	3e-06
PLN02855	424	PLN02855, PLN02855, Bifunctional selenocysteine ly	1e-05
PRK07777	387	PRK07777, PRK07777, aminotransferase; Validated	1e-04
COG1921	395	COG1921, SelA, Selenocysteine synthase [seryl-tRNA	1e-04
PRK04366	481	PRK04366, PRK04366, glycine dehydrogenase subunit	1e-04
COG1982	557	COG1982, LdcC, Arginine/lysine/ornithine decarboxy	1e-04
cd00613	398	cd00613, GDC-P, Glycine cleavage system P-protein,	2e-04
PRK05367	954	PRK05367, PRK05367, glycine dehydrogenase; Provisi	9e-04
pfam02347	429	pfam02347, GDC-P, Glycine cleavage system P-protei	0.001
COG1003	496	COG1003, GcvP, Glycine cleavage system protein P (	0.001
PRK09082	386	PRK09082, PRK09082, methionine aminotransferase; V	0.002
pfam01212	288	pfam01212, Beta_elim_lyase, Beta-eliminating lyase	0.002
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	0.002
COG0436	393	COG0436, COG0436, Aspartate/tyrosine/aromatic amin	0.003
TIGR03947	359	TIGR03947, viomycin_VioD, capreomycidine synthase	0.004
PRK02731	367	PRK02731, PRK02731, histidinol-phosphate aminotran	0.004
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	0.004

>gnl|CDD|178125 PLN02509, PLN02509, cystathionine beta-lyase

 Score =  618 bits (1595), Expect = 0.0
 Identities = 263/307 (85%), Positives = 291/307 (94%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           MAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVVVKRVNT +LDEVA+AIGP 
Sbjct: 158 MAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQ 217

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TKLVW+ESPTNPRQQI DIRKIAEMAHA GAL+LVDNSIMSPVLSRPLELGADIVMHSAT
Sbjct: 218 TKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSAT 277

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           KFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDCW+CLRG+KTMALR+EKQQ+
Sbjct: 278 KFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQE 337

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
           NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGSV SF+TGS+ALSKH+VETT
Sbjct: 338 NARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETT 397

Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
           KYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDLVRIS GIEDV+DLISDLD 
Sbjct: 398 KYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDI 457

Query: 301 ALRTGPL 307
           A RTGPL
Sbjct: 458 AFRTGPL 464

Length = 464

>gnl|CDD|233359 TIGR01329, cysta_beta_ly_E, cystathionine beta-lyase, eukaryotic

 Score =  512 bits (1319), Expect = 0.0
 Identities = 227/307 (73%), Positives = 266/307 (86%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           MAAL  +T LL  G+EI+AGDDLYGGTDRLL++V P++GVVV  V+T DLD+V +A+GP 
Sbjct: 72  MAALDVITRLLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPK 131

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TKLV +ESPTNP Q+I DIRKI+EMAHA  AL++VDN++MSP+L  PLELGADIV HSAT
Sbjct: 132 TKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPLELGADIVYHSAT 191

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           KF+AGHSDVMAGVLAVKGE +AK++YFLQN+ GSGLAPFDCW+ LRG+KT+A+R+EKQQ+
Sbjct: 192 KFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKTLAIRIEKQQE 251

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
           NA+ IA FL++HPRVKKV YAGLP HPG  LH+SQAKGAGSVLSF TGS+ALSK +VE T
Sbjct: 252 NARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEAT 311

Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
           K FSITVSFGSV SLISMPCFMSHASIP EVR+ RGL EDLVR+SVGIEDV+DLISDLD 
Sbjct: 312 KLFSITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGIEDVDDLISDLDI 371

Query: 301 ALRTGPL 307
           A  T P 
Sbjct: 372 AFVTAPA 378

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. Length = 378

>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme

 Score =  455 bits (1172), Expect = e-162
 Identities = 172/305 (56%), Positives = 222/305 (72%), Gaps = 3/305 (0%)

Query: 1   MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           MAA+ AA+  LL  G+ +VA DDLYGGT RL  +V P+ G+ V  V+  DLD + +AI P
Sbjct: 77  MAAIFAALLALLKAGDHVVATDDLYGGTYRLFEKVLPRFGIEVTFVDPSDLDALEAAIKP 136

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            TK V++E+PTNP  ++ DI  IA++A  HGAL++VDN+  SP L RPLELGADIV+HSA
Sbjct: 137 NTKAVFLETPTNPLLKVVDIEAIAKIAKKHGALVVVDNTFASPYLQRPLELGADIVVHSA 196

Query: 120 TKFIAGHSDVMAGVLAVKG-ERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 178
           TK+I GHSDV+ GV+ V G E LAK L FLQNA G+ L+PFD W+ LRG+KT+ LR+E+ 
Sbjct: 197 TKYIGGHSDVVGGVVVVNGREELAKRLRFLQNATGAVLSPFDAWLLLRGLKTLGLRMERH 256

Query: 179 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVV 237
           Q+NA K+AEFL  HP+V+KV Y GLP HPGHEL   Q  G G +LSF L G L  +   +
Sbjct: 257 QENALKLAEFLEEHPKVEKVYYPGLPSHPGHELAKKQMSGFGGMLSFELKGGLEAASKFL 316

Query: 238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD 297
           +  K FS+  S G V+SLIS P  M+HASIP E R+A G+T+ L+R+SVGIEDV+DLI+D
Sbjct: 317 DNLKLFSLAESLGGVESLISHPATMTHASIPPEEREAAGITDGLIRLSVGIEDVDDLIAD 376

Query: 298 LDKAL 302
           L +AL
Sbjct: 377 LKQAL 381

This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 382

>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

 Score =  432 bits (1114), Expect = e-153
 Identities = 166/305 (54%), Positives = 215/305 (70%), Gaps = 2/305 (0%)

Query: 1   MAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           MAA++ V   LL  G+ +VA DDLYGGT RL  R+ PK G+ V  V+  D + + +AI P
Sbjct: 65  MAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIKP 124

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            TKLV+VESPTNP  ++ DI  IAE+AH HGALL+VDN+  +P L RPLELGADIV+HSA
Sbjct: 125 ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRPLELGADIVVHSA 184

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           TK+I GHSDV+AGV+   GE L + L FL+ A G+ L+PFD W+ LRG+KT+ LR+E+  
Sbjct: 185 TKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLPLRMERHS 244

Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVE 238
           +NA K+AEFL  HP+V++V Y GLP HP HEL   Q  G G V SF L G L  +K  + 
Sbjct: 245 ENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFLN 304

Query: 239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL 298
             K FS+ VS G V+SL+  P  M+H+ +P E R A G+T  LVR+SVGIEDV DLI+DL
Sbjct: 305 ALKLFSLAVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVGIEDVEDLIADL 364

Query: 299 DKALR 303
           ++AL+
Sbjct: 365 EQALK 369

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. Length = 369

>gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

 Score =  390 bits (1005), Expect = e-136
 Identities = 155/305 (50%), Positives = 209/305 (68%), Gaps = 3/305 (0%)

Query: 1   MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV-VVKRVNTCDLDEVASAIG 58
           MAA+  A+  LL  G+ ++  DDLYGGT RL  ++  K GV V       D    A+   
Sbjct: 88  MAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE 147

Query: 59  PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHS 118
           P TKLV++E+P+NP  ++ DI  IA +A A+GAL++VDN+  +PVL RPLELGADIV+HS
Sbjct: 148 PNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQRPLELGADIVVHS 207

Query: 119 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-GSGLAPFDCWICLRGVKTMALRVEK 177
           ATK++ GHSDV+ GV+    E L + L+F Q A  G+ L+PFD W+ LRG++T+ALR+E+
Sbjct: 208 ATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLRTLALRMER 267

Query: 178 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVV 237
             +NA KIAEFLA HP+VKKV Y GLP HPGHEL   Q  G G + SF   +   +K  +
Sbjct: 268 HNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNEEAAKKFL 327

Query: 238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD 297
           ++ K F +  S G V+SLIS P  M+HASIP+E R   G+T+ LVR+SVG+EDV DLI+D
Sbjct: 328 DSLKLFKLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGLEDVEDLIAD 387

Query: 298 LDKAL 302
           L++AL
Sbjct: 388 LEQAL 392

Length = 396

>gnl|CDD|181076 PRK07671, PRK07671, cystathionine beta-lyase; Provisional

 Score =  354 bits (910), Expect = e-122
 Identities = 148/302 (49%), Positives = 212/302 (70%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           MAA+ AV  L  +G+ ++  DD+YGGT R++++V  + G+    V+T +L+EV  AI P 
Sbjct: 75  MAAITAVMMLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRPN 134

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TK ++VE+PTNP  +I DI+KI+ +A   G L +VDN+ M+P    P+ LGADIV+HSAT
Sbjct: 135 TKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSPISLGADIVLHSAT 194

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           K++ GHSDV+AG++ V    LA++L+F+QN+ G  L P D W+ LRG+KT+ +R+E+ + 
Sbjct: 195 KYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLKTLGIRMEEHET 254

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
           N++ IAEFL +HP V KV Y GLP HP HEL   QA G G ++SF  GS   +  V+E  
Sbjct: 255 NSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVGSEETANKVLERL 314

Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
           +YF++  S G+V+SLIS+P  M+HASIP + R+  G+T+ L+RISVGIED  DLI DL +
Sbjct: 315 QYFTLAESLGAVESLISIPSQMTHASIPADRRKELGITDGLIRISVGIEDGEDLIEDLAQ 374

Query: 301 AL 302
           AL
Sbjct: 375 AL 376

Length = 377

>gnl|CDD|236146 PRK08064, PRK08064, cystathionine beta-lyase; Provisional

 Score =  343 bits (882), Expect = e-117
 Identities = 141/302 (46%), Positives = 208/302 (68%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           MAA++    LL  G+ ++  +D+YGGT R+++ V  + G+    V+  +L+EVA  I P 
Sbjct: 79  MAAISTAFLLLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEVAQNIKPN 138

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TKL +VE+P+NP  ++ DIR + ++A A G L  VDN+ ++P+L +PL+LGAD+V+HSAT
Sbjct: 139 TKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPLDLGADVVLHSAT 198

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           KF+AGHSDV+AG+  VK E LA++LYFLQN+ G+ L   DCW+ LRG+KT+ +R+E   +
Sbjct: 199 KFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVLRGLKTLHVRLEHSSE 258

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
            A KIA +L  HP+V+ V Y GL  H G ++  SQA  AG+VLSF   S    +  V   
Sbjct: 259 TANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQSEEAVRQFVSHV 318

Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
           K     VS G+V+S++S P  MSHA++P E R  RG+T+ L+R+SVG+E+V+DLI+D ++
Sbjct: 319 KLPVFAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQ 378

Query: 301 AL 302
           AL
Sbjct: 379 AL 380

Length = 390

>gnl|CDD|236104 PRK07811, PRK07811, cystathionine gamma-synthase; Provisional

 Score =  330 bits (847), Expect = e-112
 Identities = 145/307 (47%), Positives = 195/307 (63%), Gaps = 14/307 (4%)

Query: 4   LAAVTHLLGT----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           +AA   LL      G+ IV  +D YGGT RL+ +V  + GV    V+  DLD V +AI P
Sbjct: 86  MAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITP 145

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            TKL+WVE+PTNP   I DI  +AE+AH  GA ++VDN+  SP L +PL LGAD+V+HS 
Sbjct: 146 RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQPLALGADVVVHST 205

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           TK+I GHSDV+ G L    E L +   FLQN  G+   PFD ++ LRG+KT+A+R+++  
Sbjct: 206 TKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLKTLAVRMDRHS 265

Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVE 238
           +NA+ +AEFLA HP V  V Y GLP HPGHE+   Q +G G ++S  L G    ++    
Sbjct: 266 ENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGEEAARDFCA 325

Query: 239 TTKYFSITVSFGSVKSLISMPCFMSHASI---PVEVRQARGLTEDLVRISVGIEDVNDLI 295
            TK F++  S G V+SLI  P  M+HAS     +EV       +DLVR+SVGIEDV DL+
Sbjct: 326 RTKVFTLAESLGGVESLIEHPSAMTHASTAGSQLEV------PDDLVRLSVGIEDVADLL 379

Query: 296 SDLDKAL 302
           +DL++AL
Sbjct: 380 ADLEQAL 386

Length = 388

>gnl|CDD|180443 PRK06176, PRK06176, cystathionine gamma-synthase/cystathionine beta-lyase; Validated

 Score =  311 bits (799), Expect = e-105
 Identities = 138/302 (45%), Positives = 196/302 (64%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           +A + AV  L  +G+ ++ GDD+YGGT RL  +V  K G+    ++T DL ++  AI P 
Sbjct: 75  LAGIHAVFSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIKKAIKPN 134

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TK +++E+P+NP  +I D+ + A +A  HG L +VDN+  +P    PL LGADIV+HS T
Sbjct: 135 TKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGT 194

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           K++ GHSDV+AG++    E LA+E+ F QNA G  L P D W+  RG+KT+ LR+E  Q 
Sbjct: 195 KYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMEAHQK 254

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
           NA  +AEFL  HP+V+KV Y GLP HP HEL   Q +G   +LSF   + + +   VE+ 
Sbjct: 255 NALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKNDSEAVAFVESL 314

Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
           K F +  S G V+SL+ +P FM+HA IP E R+A G+ + LVR+SVGIE   DL+ DL++
Sbjct: 315 KLFILGESLGGVESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVGIEHEQDLLEDLEQ 374

Query: 301 AL 302
           A 
Sbjct: 375 AF 376

Length = 380

>gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed

 Score =  299 bits (767), Expect = e-100
 Identities = 131/302 (43%), Positives = 181/302 (59%), Gaps = 16/302 (5%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           MAA+  V  L  +G+E++   DLYGGT RL      K  V    VNT  L  +  AI P 
Sbjct: 77  MAAIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTASLKAIEQAITPN 136

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TK +++E+PTNP  Q  DI  IA++A  HG LL+VDN+  +PVL RPLE GADIV+HSAT
Sbjct: 137 TKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPLEEGADIVIHSAT 196

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           K++ GH+DV+AG++  KG+ L + L + QNA G+ L+PFD W+ +RG+KT+ALR+ + ++
Sbjct: 197 KYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKTLALRMRQHEE 256

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
           NA+ IA FL   P V  V Y                 G G +LSF           +++ 
Sbjct: 257 NAKAIAAFLNEQPGVTDVLYP----------------GRGGMLSFRLQDEEWVNPFLKSL 300

Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
           K  +   S G V+S I+ P   +HA IP E+R A G+   L+R SVGIE+V DLI+DL +
Sbjct: 301 KLITFAESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGIENVEDLIADLKQ 360

Query: 301 AL 302
           A 
Sbjct: 361 AF 362

Length = 366

>gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated

 Score =  298 bits (764), Expect = e-100
 Identities = 126/305 (41%), Positives = 193/305 (63%), Gaps = 3/305 (0%)

Query: 1   MAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           MAA LA V  LL  G+ +V+   L+G T  L  ++  + G+    V+  DLD   +A+ P
Sbjct: 86  MAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAVRP 145

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            TKL ++E+P+NP  ++ DI  +AE+AHA GALL+VDN   +P L +PL+LGAD+V+HSA
Sbjct: 146 NTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQPLKLGADVVIHSA 205

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           TK++ G   V+ G +    E + +   FL+ A G  L+PF+ W+ L+G++T++LR+E   
Sbjct: 206 TKYLDGQGRVLGGAVVGSKELMEEVFGFLRTA-GPTLSPFNAWVFLKGLETLSLRMEAHS 264

Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVE 238
            NA  +AE+L +HP V++V Y GLP HP HEL   Q KG G+++SF + G    +  V++
Sbjct: 265 ANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGREAAWRVID 324

Query: 239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL 298
            T+  SIT + G  K+ I+ P   +H  +  E R A G+TE L+R++VG+EDV D+ +DL
Sbjct: 325 ATRLISITANLGDTKTTITHPATTTHGRLSPEARAAAGITEGLIRVAVGLEDVADIKADL 384

Query: 299 DKALR 303
            + L 
Sbjct: 385 ARGLA 389

Length = 390

>gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

 Score =  290 bits (745), Expect = 2e-96
 Identities = 126/338 (37%), Positives = 185/338 (54%), Gaps = 35/338 (10%)

Query: 1   MAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
            AA+      L G G+ IV+   LYGGT  L S    + G+ V+ V+  D +   +AI  
Sbjct: 87  QAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDDPENFEAAIDE 146

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            TK V+ E+  NP   + DI  IAE+AH HG  L+VDN+  +P L RP+E GADIV+HSA
Sbjct: 147 NTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLCRPIEHGADIVVHSA 206

Query: 120 TKFIAGHSDVMAGVL-------------------------AVKGERLAKELYFLQNAE-- 152
           TK+I GH   + GV+                          +          F+  A   
Sbjct: 207 TKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQ 266

Query: 153 -----GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP 207
                G+ L+PF+ ++ L+G++T++LR+E+  +NA K+AEFL +HP+V  VNY GL  HP
Sbjct: 267 LLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHP 326

Query: 208 GHEL-HYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHA 265
            H L      KGAG+VL+F + G     K  ++  K FS   + G  +SL+  P   +H 
Sbjct: 327 YHALAKKYLPKGAGAVLTFGVKGGYEAGKKFIDALKLFSHLANIGDARSLVIHPASTTHR 386

Query: 266 SIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 303
            +  E + A G+T DL+R+SVGIED++D+I+DL++AL 
Sbjct: 387 QLSEEEQAAAGVTPDLIRLSVGIEDIDDIIADLEQALE 424

Length = 426

>gnl|CDD|188131 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase

 Score =  286 bits (734), Expect = 2e-95
 Identities = 124/303 (40%), Positives = 188/303 (62%), Gaps = 1/303 (0%)

Query: 1   MAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           MAA  AA+  LLG G+ +VA   L+G    + S + P+ GV    V+  DL    +A+ P
Sbjct: 79  MAAIFAALMALLGAGDHVVASRSLFGSCFVVCSEILPRFGVQTVFVDGTDLSAWEAALKP 138

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            TK V+VE+P+NP Q++ DI  +AE+AHA GA ++VDN   +P+L +PL+LGAD+V++SA
Sbjct: 139 NTKAVFVETPSNPLQELVDIAAVAELAHAAGAKVVVDNVFATPLLQQPLKLGADVVVYSA 198

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           TK I G   V+ G +    E + + +  L    G  ++PF+ W+ L+G++T+A+RV+ Q 
Sbjct: 199 TKHIDGQGRVLGGAILGSEEYMDEPVQKLLRHTGPAMSPFNAWVLLKGLETLAIRVQHQN 258

Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVET 239
            +A  IAE+L  HP V+ V Y GLP HP HEL   Q  G G+V++F       +  V++ 
Sbjct: 259 ASALAIAEWLNGHPSVQWVYYPGLPSHPQHELAKRQMSGGGTVVTFDLDCRQAAFKVLDA 318

Query: 240 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD 299
            +   I+ + G  KS I+ P   +H  +  E R A G+ + LVR+SVG+EDV+DLI+D+D
Sbjct: 319 MRLVDISNNLGDAKSTITHPATTTHRRMGPEERAAAGIGDGLVRLSVGLEDVDDLIADID 378

Query: 300 KAL 302
           +AL
Sbjct: 379 RAL 381

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis [Amino acid biosynthesis, Aspartate family]. Length = 381

>gnl|CDD|131135 TIGR02080, O_succ_thio_ly, O-succinylhomoserine (thiol)-lyase

 Score =  285 bits (731), Expect = 6e-95
 Identities = 132/305 (43%), Positives = 195/305 (63%), Gaps = 2/305 (0%)

Query: 1   MAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           M+A+  V T LLG  + +VA  D YGGT RLL+ +  K    V  V+  D   + +A+  
Sbjct: 76  MSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQ 135

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
             KLV +E+P+NP  ++ DI KI  +A A GA+++VDN+ +SP L  PL LGAD+V+HS 
Sbjct: 136 KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPLALGADLVLHSC 195

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           TK++ GHSDV+AG +  K  ++A+EL +  N  G     FD ++ LRG++T+  R+  QQ
Sbjct: 196 TKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLRTLVARMRLQQ 255

Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVE 238
            NAQ I E+L + P VKK+ Y GLP+HPGHE+   Q KG G++LSF L G     +  + 
Sbjct: 256 RNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGEQTVRRFLG 315

Query: 239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL 298
               F++  S G V+SLI+ P  M+HA++  E R   G+++ L+R+SVG+ED +DLI+DL
Sbjct: 316 GLSLFTLAESLGGVESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVGLEDADDLIADL 375

Query: 299 DKALR 303
           ++ LR
Sbjct: 376 EQGLR 380

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine [Amino acid biosynthesis, Aspartate family]. Length = 382

>gnl|CDD|236202 PRK08249, PRK08249, cystathionine gamma-synthase; Provisional

 Score =  275 bits (704), Expect = 1e-90
 Identities = 117/304 (38%), Positives = 188/304 (61%), Gaps = 3/304 (0%)

Query: 1   MAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           MAA++   +  L  G+ +V+  D YGGT+++ +   P+ GV V    T D +++ + I  
Sbjct: 89  MAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCETGDHEQIEAEIAK 148

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
              L+++E+PTNP  +I DI ++A  A   GAL++VDN+  +P+   PL LGAD+V+HSA
Sbjct: 149 GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNPLALGADLVIHSA 208

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           TKF++GH+D + GV     + L +++Y  +   G+ + P   ++ LRG+KT+ LRV +QQ
Sbjct: 209 TKFLSGHADALGGV-VCGSKELMEQVYHYREINGATMDPMSAYLILRGMKTLKLRVRQQQ 267

Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVE 238
           ++A  +A++L +HP+V+ V Y GL  HP HE+  +Q +G G +LSF L G +   K ++ 
Sbjct: 268 ESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGMDTVKRLLP 327

Query: 239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL 298
             +Y     + G+V+++       SH    +E R A G+ E LVRISVGIED  DLI+DL
Sbjct: 328 KLRYAHRAANLGAVETIYGPARTTSHVENTLEERAALGIPEGLVRISVGIEDTEDLIADL 387

Query: 299 DKAL 302
           ++A 
Sbjct: 388 EQAF 391

Length = 398

>gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional

 Score =  271 bits (695), Expect = 2e-89
 Identities = 122/306 (39%), Positives = 193/306 (63%), Gaps = 6/306 (1%)

Query: 2   AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWT 61
           A  +++   L  G+ +VA D LYG T  LL+    + GV V  V+T +L+EV +A+   T
Sbjct: 91  AISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNALKANT 150

Query: 62  KLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLSRPLELGADIVMHSA 119
           K+V++E+P NP  ++ DI+ I+ +AH +    L+ VDN+  +P + RPL+LGAD+V+HSA
Sbjct: 151 KVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGADVVVHSA 210

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEGSGLAPFDCWICLRGVKTMALRVEK 177
           TK++ GH DV+AG   V  E    ++    +++  GS + PF+ ++ +RG+KT+ +R+EK
Sbjct: 211 TKYLNGHGDVIAG-FVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKTLQIRMEK 269

Query: 178 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHV 236
              NA K+A+FL SHP V+KV Y GL     +EL   Q    G+++SF L G +   K V
Sbjct: 270 HCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEEGKVV 329

Query: 237 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS 296
           +   K  ++ VS G  ++LI  P  M+H+    E R+  G+++ LVR+SVG+EDV+D+I+
Sbjct: 330 MNNVKLATLAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGLEDVDDIIA 389

Query: 297 DLDKAL 302
           DL +AL
Sbjct: 390 DLKQAL 395

Length = 400

>gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase

 Score =  264 bits (676), Expect = 1e-86
 Identities = 121/305 (39%), Positives = 198/305 (64%), Gaps = 3/305 (0%)

Query: 1   MAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           M A+AA +  +L  G+ +++ + LYG T  LL     K G+ V  +N    +EV + I  
Sbjct: 84  MGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEEVKAHIKD 143

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            TK+V+ E+P NP  ++ D+ ++   AH+ G  ++VDN+  +P+L+ P+ LG D+V+HSA
Sbjct: 144 NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNPVALGVDVVVHSA 203

Query: 120 TKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 178
           TK+I GH DV+AG++  K E L +  +  +++  GS ++PFD W+ LRG+KT+ +R+++ 
Sbjct: 204 TKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKTLNIRMKRH 263

Query: 179 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVV 237
            +NA K+AE+L SHP V+KV Y G  +HPGH++   Q +  G +++F L G  A +K ++
Sbjct: 264 SENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGFAGAKKLL 323

Query: 238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD 297
              K   + VS G  ++LI  P  M+HA +P E R+A G+T+ ++R+SVG+ED +DLI+D
Sbjct: 324 NNLKLIRLAVSLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGLEDADDLIAD 383

Query: 298 LDKAL 302
           L +AL
Sbjct: 384 LKQAL 388

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine [Energy metabolism, Amino acids and amines]. Length = 391

>gnl|CDD|236298 PRK08574, PRK08574, cystathionine gamma-synthase; Provisional

 Score =  259 bits (665), Expect = 7e-85
 Identities = 127/312 (40%), Positives = 185/312 (59%), Gaps = 15/312 (4%)

Query: 1   MAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI-G 58
           MAA++ +   LL  G+ +V   + YG T RLL  +  K GV V        +++  AI  
Sbjct: 78  MAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLE-KFGVKVVLAYP-STEDIIEAIKE 135

Query: 59  PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHS 118
             TKLV++E+ TNP  ++ D+ ++A+ A   GA+L+VDN+  +P+L RPL  GAD V+HS
Sbjct: 136 GRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPLRHGADFVVHS 195

Query: 119 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 178
            TK+IAGH+DV+ GV         +EL+  +   G+ + PF+ ++ LRG+KT+ +R E+Q
Sbjct: 196 LTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKTLEVRFERQ 255

Query: 179 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA------GSVLSF-LTGSLA 231
             NA  IAEFL+ HP+V +V Y GLP  P H +    AK        G V+SF + G   
Sbjct: 256 CRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGV----AKRLFGKDLYGGVVSFRVKGGRD 311

Query: 232 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDV 291
                + + K    + S G V+SL + P   + + IP E R+A G+TEDLVR+SVG+EDV
Sbjct: 312 AVLKFLRSLKLIKPSPSLGGVESLATYPVKSAASPIPEEDRKALGITEDLVRLSVGLEDV 371

Query: 292 NDLISDLDKALR 303
            DLI DLD+AL 
Sbjct: 372 EDLIEDLDQALG 383

Length = 385

>gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional

 Score =  259 bits (663), Expect = 9e-85
 Identities = 127/305 (41%), Positives = 181/305 (59%), Gaps = 2/305 (0%)

Query: 1   MAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           M+A+  V T  L  G+ +VA  D YGG+ RL   +  +    V  V+  D   + +A+  
Sbjct: 77  MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAE 136

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
             KLV VESP+NP  ++ DI KI  +A   GA+ +VDN+ +SP L  PL LGAD+V+HS 
Sbjct: 137 KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPLALGADLVLHSC 196

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           TK++ GHSDV+AGV+  K   +  EL +  N  G     FD ++ LRG++T+  R+E  Q
Sbjct: 197 TKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQ 256

Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVE 238
            NAQ I ++L + P VKK+ +  LPE+ GHE+   Q KG G++LSF L G     +  + 
Sbjct: 257 RNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLG 316

Query: 239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL 298
               F++  S G V+SLIS    M+HA +  E R A G++E L+RIS GIED  DLI+DL
Sbjct: 317 GLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADL 376

Query: 299 DKALR 303
           +   R
Sbjct: 377 ENGFR 381

Length = 386

>gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional

 Score =  255 bits (653), Expect = 6e-83
 Identities = 124/306 (40%), Positives = 189/306 (61%), Gaps = 5/306 (1%)

Query: 1   MAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           M A+ A    LL  G+E++    LYG T   L     + GV V+ V+  D   + +AI  
Sbjct: 90  MGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAISD 149

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            T++V+ E+P NP  ++ DI  +AE+AH  GA ++VDN+  +P L RPLELGAD+V+HSA
Sbjct: 150 KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPLELGADLVVHSA 209

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKE--LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 177
           TK++ GH D+ AG L V G+ LA    L  L++  G+ ++PFD ++ +RG+KT+ALR+++
Sbjct: 210 TKYLGGHGDITAG-LVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKTLALRMDR 268

Query: 178 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHV 236
              +AQ +AE+LA HP V+ V+Y GLP    H L   Q    G +++F L G +A  +  
Sbjct: 269 HCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKGGIAAGRRF 328

Query: 237 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS 296
           +   + F+  VS G  +SL   P  M+H++   E R   G++E LVR+SVG+EDV D+++
Sbjct: 329 MNALQLFARAVSLGDAESLAQHPASMTHSTYTPEERAEHGISEGLVRLSVGLEDVADILA 388

Query: 297 DLDKAL 302
           DL +AL
Sbjct: 389 DLAQAL 394

Length = 403

>gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase

 Score =  254 bits (651), Expect = 2e-82
 Identities = 125/336 (37%), Positives = 183/336 (54%), Gaps = 34/336 (10%)

Query: 1   MAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
            AA   A+ +L   G+ IV+   LYGGT  L      + G+ V+ V+  D +E   AI  
Sbjct: 82  QAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAIDE 141

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            TK V+ E+  NP   + DI  IAE+AHAHG  L+VDN+  +P L RP++ GADIV+HSA
Sbjct: 142 NTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLCRPIDHGADIVVHSA 201

Query: 120 TKFIAGHSDVMAGVLAVKG------ERLAK------------------ELYFLQNAE--- 152
           TK+I GH   + GV+   G       R                        F+  A    
Sbjct: 202 TKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYHGLVFTETFGNPAFIVKARVQL 261

Query: 153 ----GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG 208
               G+ L+PF+ ++ L+G++T++LR+E+  +NA K+AEFL +HP+V  VNY GL  HP 
Sbjct: 262 LRDLGAALSPFNAFLLLQGLETLSLRMERHVENALKVAEFLEAHPKVAWVNYPGLASHPH 321

Query: 209 HELHYSQA-KGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHAS 266
           H L      KG G+VLSF + G     K  ++  K  S   + G  KSL+  P   +H  
Sbjct: 322 HALAKKYLPKGFGAVLSFEIKGGREAGKKFIDALKLASHLANVGDAKSLVIHPASTTHQQ 381

Query: 267 IPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 302
           +  E +   G+T  L+R+SVGIE+++D+I+DL++AL
Sbjct: 382 LSEEEQLKAGVTPGLIRLSVGIENIDDIIADLEQAL 417

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities [Amino acid biosynthesis, Aspartate family, Amino acid biosynthesis, Serine family]. Length = 418

>gnl|CDD|235983 PRK07269, PRK07269, cystathionine gamma-synthase; Reviewed

 Score =  249 bits (638), Expect = 3e-81
 Identities = 122/302 (40%), Positives = 186/302 (61%), Gaps = 18/302 (5%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           M+A+     +   G ++VA  DLYGG+ R  ++   +        NT   +E+ +AI   
Sbjct: 79  MSAIVLAFSVFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTYANT--EEELIAAIEED 136

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           T +V++E+PTNP     DI K+A++AHA GA ++VDN+  SP+  RP+ELGADIV+HSAT
Sbjct: 137 TDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIELGADIVLHSAT 196

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           K+++GH+DV+AGV+      L ++L++  N  G+ L+PFD ++ +RG+KT++LR+E+   
Sbjct: 197 KYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTLSLRMERSTA 256

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
           NAQ++  FL   P VK+V Y G                 G ++SF         H++ + 
Sbjct: 257 NAQEVVAFLKKSPAVKEVLYTGK----------------GGMISFKVADETRIPHILNSL 300

Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
           K F+   S G V+SLI+ P   +HA IP EVR + GLT+DL+R+S+GIED  DLI+DL +
Sbjct: 301 KVFTFAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIGIEDARDLIADLKQ 360

Query: 301 AL 302
           AL
Sbjct: 361 AL 362

Length = 364

>gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional

 Score =  250 bits (639), Expect = 4e-81
 Identities = 124/297 (41%), Positives = 183/297 (61%), Gaps = 1/297 (0%)

Query: 7   VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWV 66
           V+ LLG  + IVA  D YGGT RL +    K    V+ V+  D   + +A+    KL+ +
Sbjct: 85  VSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILL 144

Query: 67  ESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGH 126
           E+P+NP  ++ DI ++ + A A GAL+ VDN+ ++PVL +PLELGAD V+HS TK+I GH
Sbjct: 145 ETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKYINGH 204

Query: 127 SDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIA 186
           SDV+ GVL  K +  A+EL +  N  G+   PFD ++ LRG++T+  R+   +++AQ+I 
Sbjct: 205 SDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRTLGARMRVHEESAQQIL 264

Query: 187 EFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSI 245
            +L +   V  + +  LPEHPGHE+   Q  G GS+LSF   GS    K  V+    FS+
Sbjct: 265 AYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKALALFSL 324

Query: 246 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 302
             S G V+SLI  P  M+H ++  E     G+++ L+R+SVG+ED  DLI+DLD+A 
Sbjct: 325 AESLGGVESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVGLEDAQDLIADLDQAF 381

Length = 388

>gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional

 Score =  246 bits (630), Expect = 9e-80
 Identities = 119/304 (39%), Positives = 185/304 (60%), Gaps = 8/304 (2%)

Query: 1   MAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           MAA++A     L  G+ I+  + LYG T   L  +  K  +     +     ++ + I P
Sbjct: 86  MAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDMETEADIENKIRP 145

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            TKL++VE+P NP  ++ D++++  +A  +G L++VDN+  SP L RPLELG D V+HSA
Sbjct: 146 NTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPLELGCDAVVHSA 205

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           TK+I GH DV+AGV   K   LA+++  ++   G  +APFD W+ LRG+KT+A+R+++  
Sbjct: 206 TKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLKTLAVRMDRHC 265

Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVE 238
           DNA+KI  FL +H  V+ V Y      P  EL   Q K  G V+SF + G    ++  + 
Sbjct: 266 DNAEKIVSFLKNHDAVEGVWY------PEGELASRQMKRGGGVISFSIKGGKEETQAFIN 319

Query: 239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL 298
              + +I VS G  ++LI  P  M+HA+IP E+RQ  G+ ++L+R+SVG+E   D++SDL
Sbjct: 320 DLHFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGLESWEDIVSDL 379

Query: 299 DKAL 302
           ++AL
Sbjct: 380 EQAL 383

Length = 386

>gnl|CDD|181554 PRK08776, PRK08776, cystathionine gamma-synthase; Provisional

 Score =  244 bits (624), Expect = 1e-78
 Identities = 126/304 (41%), Positives = 183/304 (60%), Gaps = 2/304 (0%)

Query: 1   MAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           M A+  V + LL  G+ +V   D YGG+ RL + +  K    +   +  D   +A A+  
Sbjct: 85  MGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQ 144

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
             KLV +E+P+NP  +I D+R + E AH  GAL +VDN+ +SP L +PLE GAD+V+HS 
Sbjct: 145 SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKPLEFGADLVLHST 204

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           TK+I GHSDV+ G +  +   L ++L +  NA G   +PFD ++ LRG++T+  R+   Q
Sbjct: 205 TKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGLRTLDARLRVHQ 264

Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVE 238
           +NA  IA  L  H  V +V Y GL  HPGH L   Q KG G++LSF L G  A  +  V+
Sbjct: 265 ENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEGGEAAVRAFVD 324

Query: 239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL 298
             +YF++  S G V+SLI+ P  M+HA++  E R A G+++ L+R+SVGIE   DL+ DL
Sbjct: 325 GLRYFTLAESLGGVESLIAHPASMTHAAMTAEARAAAGISDGLLRLSVGIESAEDLLIDL 384

Query: 299 DKAL 302
              L
Sbjct: 385 RAGL 388

Length = 405

>gnl|CDD|236159 PRK08134, PRK08134, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  239 bits (611), Expect = 2e-76
 Identities = 125/340 (36%), Positives = 176/340 (51%), Gaps = 37/340 (10%)

Query: 1   MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
            AAL  A+  L+G G  IVA   LYGG+  LL     + G+    V   D+D   +AI P
Sbjct: 89  QAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPGDIDGWRAAIRP 148

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            T+L++ E+  NP  ++ DI  +A +AH  G  LLVD++  +P L RP E GAD+V HSA
Sbjct: 149 NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPFEHGADLVYHSA 208

Query: 120 TKFIAGHSDVMAGVLAVKGERL----------AKELY----------------FLQNAE- 152
           TKF+ GH   + GVL V G R             E Y                FL  A  
Sbjct: 209 TKFLGGHGTAIGGVL-VDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARR 267

Query: 153 ------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH 206
                 G+ L+P + W  L+G++T+ LR+E+   N +K+  FLASHP V +V +  L  H
Sbjct: 268 EGLRDFGACLSPMNAWQLLQGIETLPLRMERHVANTRKVVAFLASHPAVARVAHPELESH 327

Query: 207 PGHELHYS-QAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 264
           P H L      +GAGSV SF L G  A  +  +E+ K FS   + G  +SL+  P   +H
Sbjct: 328 PDHALAKRLLPRGAGSVFSFDLKGGRAAGRKFIESLKLFSHLANVGDARSLVIHPASTTH 387

Query: 265 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT 304
             +      A G+ E  +R+S+G+ED +DLI DL +AL+ 
Sbjct: 388 FRMDAAALAAAGIGEGTIRLSIGLEDADDLIDDLKRALKA 427

Length = 433

>gnl|CDD|236103 PRK07810, PRK07810, O-succinylhomoserine sulfhydrylase; Provisional

 Score =  237 bits (607), Expect = 5e-76
 Identities = 116/306 (37%), Positives = 178/306 (58%), Gaps = 8/306 (2%)

Query: 3   ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTK 62
           AL A   LLG G+ +VA   L+G    + + + P+ GV    V+  DL +   A+   T+
Sbjct: 101 ALGA---LLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQ 157

Query: 63  LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF 122
            V+ E+P+NP Q + DI  ++E+AHA GA +++DN   +P+L R L LGAD+V++S TK 
Sbjct: 158 AVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKH 217

Query: 123 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNA 182
           I G   V+ G +    E +   +  L    G  L+ F+ W+ L+G++T+ALRV     +A
Sbjct: 218 IDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLETLALRVRHSNASA 277

Query: 183 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKH----VV 237
            +IAEFL  HP V+ V Y  LP HP ++L   Q  G G+V++F L      +K     V+
Sbjct: 278 LRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRAFEVL 337

Query: 238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD 297
           +  +   I+ + G  KSLI+ P   +H ++  E R A GL + +VR+SVG+ED +DLI+D
Sbjct: 338 DKLRVIDISNNLGDAKSLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVGLEDTDDLIAD 397

Query: 298 LDKALR 303
           LD+AL 
Sbjct: 398 LDRALG 403

Length = 403

>gnl|CDD|236105 PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  237 bits (607), Expect = 1e-75
 Identities = 124/336 (36%), Positives = 181/336 (53%), Gaps = 35/336 (10%)

Query: 2   AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV-NTCDLDEVASAIGPW 60
           A   A+ +L G G+ IV+   LYGGT  L     PK G+ V  V +  DLD   +A+ P 
Sbjct: 96  AETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVRPN 155

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TK  + E+ +NP+  + DI  +AE+AH  G  L+VDN+I +P L RPLE GADIV+HSAT
Sbjct: 156 TKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSAT 215

Query: 121 KFIAGHSDVMAGVLAVKGERL-------------------------------AKELYFLQ 149
           K++ GH   +AGV+ V G                                   K    L 
Sbjct: 216 KYLGGHGTAIAGVI-VDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLL 274

Query: 150 NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGH 209
              GS ++PF+ ++  +G++T++LR+E+   NAQ++AEFL +   V  VNYAGLP  P +
Sbjct: 275 RDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLEARDEVASVNYAGLPSSPWY 334

Query: 210 ELHYSQA-KGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI 267
           E     A KG G+VLSF L G +   K  V      S   + G V+SL+  P   +H+ +
Sbjct: 335 ERAKRLAPKGTGAVLSFELAGGVEAGKAFVNALTLHSHVANIGDVRSLVIHPASTTHSQL 394

Query: 268 PVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 303
             E + A G+T  LVR++VGIE ++D+++DL+    
Sbjct: 395 TPEEQLATGVTPGLVRLAVGIEGIDDILADLEAGFA 430

Length = 436

>gnl|CDD|236201 PRK08248, PRK08248, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  230 bits (587), Expect = 1e-72
 Identities = 119/336 (35%), Positives = 185/336 (55%), Gaps = 34/336 (10%)

Query: 2   AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWT 61
           A   ++ ++   G+EIV+   LYGGT  L +   PK G+ VK V+  D +   +AI   T
Sbjct: 91  AITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAITDKT 150

Query: 62  KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATK 121
           K ++ E+  NP+  + DI  +A +AH HG  L+VDN+  SP L RP+E GADIV+HSATK
Sbjct: 151 KALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPIEHGADIVVHSATK 210

Query: 122 FIAGHSDVMAGVLAVKG--------------------------ERLAKELYFLQ------ 149
           FI GH   + GV+   G                          + + +  Y  +      
Sbjct: 211 FIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLL 270

Query: 150 NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGH 209
              G+ L+PF+ ++ L+G++T+ LR+E+  +NA  +A+FL  H  V+ V+Y GLP HP +
Sbjct: 271 RDLGAALSPFNSFLLLQGLETLHLRMERHSENALAVAKFLEEHEAVEWVSYPGLPSHPSY 330

Query: 210 ELHYSQ-AKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI 267
           EL      KG G++L+F + G +   K ++++ K FS   + G  KSLI  P   +H  +
Sbjct: 331 ELAKKYLPKGQGAILTFGIKGGVEAGKKLIDSVKLFSHLANVGDSKSLIIHPASTTHQQL 390

Query: 268 PVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 303
             E + A G+T  LVR+SVG E ++D++ DL +A+R
Sbjct: 391 SEEEQLAAGVTPGLVRLSVGTEAIDDILDDLRQAIR 426

Length = 431

>gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  229 bits (586), Expect = 1e-72
 Identities = 125/337 (37%), Positives = 178/337 (52%), Gaps = 37/337 (10%)

Query: 2   AALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           AA   V H LL  G+E +A   LYGG+           G  V+  +  D      AI P 
Sbjct: 89  AAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITPR 148

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TK +++ES  NP   + DI  IAE+AH  G  L+VDN++ SP L RP+E GADIV+HS T
Sbjct: 149 TKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLT 208

Query: 121 KFIAGHSDVMAGVLA----------------------VKGERLAK---ELYFLQNAE--- 152
           KF+ GH + M G++                         G  L +      F   A    
Sbjct: 209 KFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLG 268

Query: 153 ----GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG 208
               G  ++PF+ ++ L G++T+ LR+++  DNA  +AE+L  HP+V  VNYAGLP+ P 
Sbjct: 269 LRDLGPAISPFNAFLILTGIETLPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGLPDDPY 328

Query: 209 HELH--YSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHA 265
           H L   YS  KGAG+V +F L G       +V + K FS   + G  +SL+  P   +H 
Sbjct: 329 HALAQKYS-PKGAGAVFTFGLKGGYEAGVKLVSSLKLFSHLANIGDTRSLVIHPASTTHR 387

Query: 266 SIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 302
            +  E + A G   D+VR+S+GIEDV+D+I+DL++AL
Sbjct: 388 QLTDEQKVAAGAGPDVVRLSIGIEDVDDIIADLEQAL 424

Length = 427

>gnl|CDD|168979 PRK07504, PRK07504, O-succinylhomoserine sulfhydrylase; Reviewed

 Score =  227 bits (580), Expect = 4e-72
 Identities = 111/308 (36%), Positives = 178/308 (57%), Gaps = 6/308 (1%)

Query: 1   MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           MAA+ AA+   +  G+ +VA   L+G    ++  + P+ G+    V+  DLD    A+ P
Sbjct: 90  MAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDGLDLDNWEKAVRP 149

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            TK+ ++ESPTNP  ++ DI  +A++A+  GA L+VDN   +P+  +PLELGA IV++SA
Sbjct: 150 NTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSA 209

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKEL--YFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 177
           TK I G    + GV+      + + L  YF     G  L+PF+ W  L+G++T+ +RV +
Sbjct: 210 TKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHT--GPSLSPFNAWTLLKGLETLPVRVRQ 267

Query: 178 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHV 236
           Q ++A  IA+FLA HP+V +V Y G  +HP  ++   Q  G  ++++F L G    +   
Sbjct: 268 QTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAFRF 327

Query: 237 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS 296
           +   K   I+ + G  KSLI+ P   +H ++  E R   G++E  +R+S G+ED +DLI 
Sbjct: 328 LNALKIVRISNNLGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLSAGLEDTDDLIE 387

Query: 297 DLDKALRT 304
           DL  AL+ 
Sbjct: 388 DLAAALKK 395

Length = 398

>gnl|CDD|235807 PRK06460, PRK06460, hypothetical protein; Provisional

 Score =  226 bits (578), Expect = 5e-72
 Identities = 116/296 (39%), Positives = 181/296 (61%), Gaps = 2/296 (0%)

Query: 10  LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESP 69
           LL  G  ++   D++G + R  +      GV V   N    + +  A      +V+VE+ 
Sbjct: 80  LLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGSDNIIEKAKSKRYDVVFVENI 139

Query: 70  TNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDV 129
           TNP  ++ DI +++++   +G++L+VD +  +P+  +PLELGADIV+HSA+KF+AGH+DV
Sbjct: 140 TNPLLRVVDITELSKVCKENGSILIVDATFSTPINQKPLELGADIVVHSASKFLAGHNDV 199

Query: 130 MAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFL 189
           +AG+ A  G+ L   +  ++   G+ L P   ++ LRG+KT+ +R++    NA++IAEFL
Sbjct: 200 IAGLAAGYGK-LLNVIDQMRRTLGTSLDPHAAYLTLRGIKTLKIRMDVINRNAEQIAEFL 258

Query: 190 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVS 248
             HP+V KV Y GL  H  +E+     KG G VLSF + G    +  V+++ K      +
Sbjct: 259 EGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKSLKLIIPAQT 318

Query: 249 FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT 304
            G V S+IS P  MSH ++ +E R+  G+T+ L+R+SVGIEDVNDLI DLD+AL T
Sbjct: 319 LGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGIEDVNDLIEDLDRALST 374

Length = 376

>gnl|CDD|236061 PRK07582, PRK07582, cystathionine gamma-lyase; Validated

 Score =  217 bits (555), Expect = 1e-68
 Identities = 110/306 (35%), Positives = 156/306 (50%), Gaps = 15/306 (4%)

Query: 1   MAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           MAA+ AV   LL  G+ +V   D Y     L        GV V+   T  +   A A   
Sbjct: 75  MAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGM---AEAALA 131

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
              LV  E+P+NP   +CD+  +A  AHA GALL+VDN+  +P+  RPLELGAD+V+ S 
Sbjct: 132 GADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRPLELGADLVVASD 191

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           TK + GHSD++ G +A +   L   +   +   G+   PF+ W+  R + T+ LR  +Q 
Sbjct: 192 TKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGTLGLRFARQC 251

Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVET 239
            NA  +AE LA HP V+ V Y GLP  P HE+   Q +  G ++SF     A ++  V  
Sbjct: 252 ANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELADAAAAERFVAA 311

Query: 240 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD 299
           ++      SFG V           H S     R    + E  VR+S GIED +DL++DL+
Sbjct: 312 SRLVVAATSFGGV-----------HTSADRRARWGDAVPEGFVRLSCGIEDTDDLVADLE 360

Query: 300 KALRTG 305
           +AL   
Sbjct: 361 RALDAL 366

Length = 366

>gnl|CDD|180809 PRK07049, PRK07049, methionine gamma-lyase; Validated

 Score =  216 bits (552), Expect = 2e-67
 Identities = 109/321 (33%), Positives = 182/321 (56%), Gaps = 21/321 (6%)

Query: 1   MAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV----VVKRVNTCDLDEV-- 53
           M+A+A      +  G+ I+    LYGGT+ LL++     GV        ++   +     
Sbjct: 108 MSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFADGLSEAAIGAAAE 167

Query: 54  -ASAIGPWTKLVWVESPTNPRQQICDI---RKIAEM---AHAHGALLLVDNSIMSPVLSR 106
            A+A G    L+ +E+P NP   + D+   R++A+       H  ++  DN+++ PV  +
Sbjct: 168 AAAAKGR-VSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQK 226

Query: 107 PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-LAKELYFLQNAEGSGLAPFDCWICL 165
           PLE GAD+ ++S TK++ GHSD++AG  AV G + L +++  L++A G+ L P  CW+  
Sbjct: 227 PLEHGADLSVYSLTKYVGGHSDLVAG--AVLGRKALIRQVRALRSAIGTQLDPHSCWMLG 284

Query: 166 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL--PEHPGHELHYSQAKGAGSVL 223
           R ++T+ LR+E+   NA+ +AEFL  HP+V+K++Y     P+     ++  Q  GAGS  
Sbjct: 285 RSLETLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTF 344

Query: 224 SF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLV 282
           SF + G  A +   +   + F + VS G  +SL S P  M+H+ +P +VR+  G+ E  +
Sbjct: 345 SFDIKGGQAAAFRFLNALQIFKLAVSLGGTESLASHPASMTHSGVPADVRERIGVLESTI 404

Query: 283 RISVGIEDVNDLISDLDKALR 303
           R+S+GIE  +DLI+DL +AL 
Sbjct: 405 RLSIGIEHPDDLIADLAQALD 425

Length = 427

>gnl|CDD|180392 PRK06084, PRK06084, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  208 bits (530), Expect = 2e-64
 Identities = 122/342 (35%), Positives = 185/342 (54%), Gaps = 43/342 (12%)

Query: 2   AALAAVTHLLGT----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI 57
           + +AA+T+ + T    G+ IV+   LYGGT  LL+   P+ G+  +     D+  + + I
Sbjct: 81  SGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALI 140

Query: 58  GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMH 117
              TK V+ ES  NP   I DI+ +A+ AH HG  L+VDN++ +PVL RP E GADIV+H
Sbjct: 141 DERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCRPFEHGADIVVH 200

Query: 118 SATKFIAGHSDVMAGVLAVKG---------------------------ERLAKELYF--- 147
           S TK+I GH   + G++   G                           E      +    
Sbjct: 201 SLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRC 260

Query: 148 ----LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL 203
               L+N  G+ L+PF+ ++ L+G++T+ALR+E+  +NA K+A +L  HP+V  V YAGL
Sbjct: 261 RVVPLRNM-GAALSPFNAFLILQGLETLALRMERHTENALKVARYLQQHPQVAWVKYAGL 319

Query: 204 PEHPGHEL--HYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPC 260
           P+HP HEL   Y   K A S+LSF + G  A     ++  K     V+ G  KSL   P 
Sbjct: 320 PDHPEHELARRYMGGKPA-SILSFGIKGGQAAGARFIDALKLVVRLVNIGDAKSLACHPA 378

Query: 261 FMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 302
             +H  +  E  +  G++ D+VR+S+GIE ++D+I+DL +AL
Sbjct: 379 STTHRQLNDEELEKAGVSRDMVRLSIGIEHIDDIIADLAQAL 420

Length = 425

>gnl|CDD|102374 PRK06434, PRK06434, cystathionine gamma-lyase; Validated

 Score =  206 bits (525), Expect = 5e-64
 Identities = 105/308 (34%), Positives = 167/308 (54%), Gaps = 20/308 (6%)

Query: 1   MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK-----RVNTCDLDEVA 54
           M A+ +A+  L+  G+ I++  DLYG T    ++V    G+ V      R+N+ D D   
Sbjct: 89  MGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLNSLDFDPSN 148

Query: 55  SAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADI 114
                   L++ ES TNP  ++ DI+ ++     H   ++VD +  SP    PL+LGAD+
Sbjct: 149 ------YDLIYAESITNPTLKVPDIKNVSS--FCHENDVIVDATFASPYNQNPLDLGADV 200

Query: 115 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALR 174
           V+HSATK+I+GHSDV+ GV     + +   L   +   GS   P   ++ LRG+KT+ LR
Sbjct: 201 VIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKTLGLR 260

Query: 175 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSK 234
           +EK   N  ++A FL    ++  V Y      P  E+     +G G +LSF   S+    
Sbjct: 261 MEKHNKNGMELARFLRDSKKISNVYY------PDTEIGKKVLRGFGGMLSFELRSMEDVH 314

Query: 235 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL 294
             +   +   +  S G V+SLI++P   SH+S+  E R+  G++++LVR S+GIED++DL
Sbjct: 315 KFIRNLEIPMVAASLGGVESLITLPVETSHSSLSPEERERLGISDNLVRFSIGIEDIDDL 374

Query: 295 ISDLDKAL 302
           I D++ AL
Sbjct: 375 IKDIENAL 382

Length = 384

>gnl|CDD|168128 PRK05613, PRK05613, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  195 bits (498), Expect = 2e-59
 Identities = 119/338 (35%), Positives = 179/338 (52%), Gaps = 38/338 (11%)

Query: 2   AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV-NTCDLDEVASAIGPW 60
           A  AA+ +L G G+ IV    LYGGT+ L      + G+ V  V N  D +   +A+ P 
Sbjct: 96  AETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQPN 155

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TK  + E+  NP+  + DI  +AE+AH +   L+VDN+I +  L RPLELGAD+V+ S T
Sbjct: 156 TKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRPLELGADVVVASLT 215

Query: 121 KFIAGHSDVMAGVLAVKG------ERLAKEL--YF---------LQNAE----------- 152
           KF  G+   + GVL   G      ER  K +  YF         L+ A+           
Sbjct: 216 KFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKAR 275

Query: 153 -------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE 205
                  G+ L+PF+ W+  +G+ T++LR+E+  +NA K+AEFL +H +V KVN+AGL +
Sbjct: 276 AGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHNENAIKVAEFLNNHEKVAKVNFAGLKD 335

Query: 206 HPGHELHYSQA-KGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 263
            P +        K  GSVLSF + G    +   ++  K  S   + G V+SL+  P   +
Sbjct: 336 SPWYATKEKLGLKYTGSVLSFDIKGGKDEAWAFIDALKLHSNLANIGDVRSLVVHPATTT 395

Query: 264 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA 301
           H+          G+T+  VR+SVGIED++D+I+DL+  
Sbjct: 396 HSQSDEAGLARAGITQATVRLSVGIEDIDDIIADLEGG 433

Length = 437

>gnl|CDD|235650 PRK05939, PRK05939, hypothetical protein; Provisional

 Score =  194 bits (494), Expect = 3e-59
 Identities = 108/339 (31%), Positives = 165/339 (48%), Gaps = 49/339 (14%)

Query: 1   MAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           MAA+AAV   LL  G+ +V+   L+G T+ L   +    GV V  V+  D+  VA+AI P
Sbjct: 72  MAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLR-GLGVEVTMVDATDVQNVAAAIRP 130

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            T++V+VE+  NP  Q+ D+  I  +    G L +VDN++ SP L RP ++GA +V++S 
Sbjct: 131 NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWLFRPKDVGASLVINSL 190

Query: 120 TKFIAGHSDVMAGVLAVKGE----RLA--KELYFLQNAEGSGLAPF------DCWICLR- 166
           +K+IAGH + + G +   G             Y   + +  GL         D    L  
Sbjct: 191 SKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATLSS 250

Query: 167 --------GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG 218
                   G +T+ALRV++   NA  +A+FL +HP+V +V Y GL  HP H       + 
Sbjct: 251 EAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRH 310

Query: 219 AGSVLSFLTGSLALSKHVVETTKYFSITVS---FGSVKSLISMPCFMSHASIPV------ 269
            G +LSF    LA      +      + +     G  ++L+          IPV      
Sbjct: 311 YGGLLSF---ELADGIDCFDFLNRLKLVIKATHLGDTRTLV----------IPVAPTIYY 357

Query: 270 ----EVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT 304
               E R + G+ + L+R+SVGIED  DLI+D ++AL  
Sbjct: 358 EMGAERRASMGIADSLIRVSVGIEDEADLIADFEQALDA 396

Length = 397

>gnl|CDD|168320 PRK05968, PRK05968, hypothetical protein; Provisional

 Score =  183 bits (467), Expect = 2e-55
 Identities = 106/314 (33%), Positives = 175/314 (55%), Gaps = 29/314 (9%)

Query: 1   MAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           MAA+++ V   +  G+ IVA   +Y    RL   +  + GV V  V+  D + VA A+ P
Sbjct: 88  MAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKAL-P 146

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
             KL+++ESPT+   ++ D+  +A +A  HG + ++DNS  SPV  RP+ LG D+V+HSA
Sbjct: 147 GAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPITLGVDLVIHSA 206

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-----GSGLAPFDCWICLRGVKTMALR 174
           +K++ GHSD +AGV+A   E +A+      NAE     G+ L+PF+ W+ LRG++T+ LR
Sbjct: 207 SKYLGGHSDTVAGVVAGSKEHIAR-----INAEAYPYLGAKLSPFEAWLLLRGLRTLPLR 261

Query: 175 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSK 234
           ++  + +A +IA  L +HP V++V +  L  HP   L      G   + SF+       +
Sbjct: 262 MKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLS-----GTSGLFSFIFREGIDVR 316

Query: 235 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR------QARGLTEDLVRISVGI 288
              +  K F + VS+G  +SL+ +P     A + ++ +         G++   VR+ VG+
Sbjct: 317 AFADALKLFRLGVSWGGHESLV-VP-----AEVVLQQKAQPNSAARFGVSPRSVRLHVGL 370

Query: 289 EDVNDLISDLDKAL 302
           E    L +DL++AL
Sbjct: 371 EGTEALWADLEQAL 384

Length = 389

>gnl|CDD|235657 PRK05967, PRK05967, cystathionine beta-lyase; Provisional

 Score =  167 bits (425), Expect = 4e-49
 Identities = 95/312 (30%), Positives = 158/312 (50%), Gaps = 18/312 (5%)

Query: 2   AALAAVT----HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI 57
           + LAAVT      L  G+  +  D +Y  T      +  + GV V+  +      +A  +
Sbjct: 87  SGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLM 146

Query: 58  GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMH 117
            P TK+V  E+P +   ++ DI  IAE AH HGA++++DN+  +P+  RPL+ G DI +H
Sbjct: 147 RPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYFRPLDFGVDISIH 206

Query: 118 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 177
           +ATK+ +GHSD++ G ++   E+   +L       G    P D +  LRG++TM +R+E 
Sbjct: 207 AATKYPSGHSDILLGTVSAN-EKCWPQLLEAHGTLGLCAGPDDTYQILRGLRTMGIRLEH 265

Query: 178 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKH- 235
            + +A +IA +L   P V +V +  LP  PGHE+      GA  + SF L       K  
Sbjct: 266 HRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAK 325

Query: 236 ---VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTED-LVRISVGIEDV 291
               ++  + F +  S+G  +SL        H  +  +   A+      ++R+ +G+EDV
Sbjct: 326 AHAFLDALEIFGLGYSWGGYESL------ALHVKL-GDRTVAKAPYAGPVIRLQIGLEDV 378

Query: 292 NDLISDLDKALR 303
            DL +DL++   
Sbjct: 379 PDLKADLERGFA 390

Length = 395

>gnl|CDD|130391 TIGR01324, cysta_beta_ly_B, cystathionine beta-lyase, bacterial

 Score =  162 bits (411), Expect = 4e-47
 Identities = 89/302 (29%), Positives = 158/302 (52%), Gaps = 13/302 (4%)

Query: 4   LAAVTH----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           LAAVT+     +  G+ ++  D  Y  T      V  + GV +   +    +++A+ I P
Sbjct: 75  LAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLIQP 134

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            TK++++E+P++   +I DI  IA+ A   G ++++DN+  + +L +PLE G DI + + 
Sbjct: 135 NTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFKPLEHGVDISIQAG 194

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           TK++ GHSD+M G   V   R   +L       G  +   D +  LRG++T+ +R+++ Q
Sbjct: 195 TKYLVGHSDIMIGT-VVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRTLGVRLKQHQ 253

Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHV--- 236
           +++  IA++L+  P V +V +  LP  PGHE       G+  + SF+   L   K V   
Sbjct: 254 ESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLT-QKQVHAF 312

Query: 237 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS 296
           ++  + F +  S+G  +SL  +         P      R L   L+R+ +G+E+V+DL +
Sbjct: 313 LDHLQLFGLGYSWGGYESLA-LCNQPELGHRPN---IKRNLEGPLIRVHIGLENVDDLKA 368

Query: 297 DL 298
           DL
Sbjct: 369 DL 370

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys [Amino acid biosynthesis, Aspartate family]. Length = 377

>gnl|CDD|181615 PRK09028, PRK09028, cystathionine beta-lyase; Provisional

 Score =  158 bits (402), Expect = 1e-45
 Identities = 94/310 (30%), Positives = 163/310 (52%), Gaps = 21/310 (6%)

Query: 2   AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWT 61
           A   A+   L  G+ ++  D  Y  T  L  ++    G+     +    + +   I P T
Sbjct: 88  AISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPNT 147

Query: 62  KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATK 121
           K++++ESP +   ++ D+  ++ +AH H  ++++DN+  SP+ SRP E+G DI + +ATK
Sbjct: 148 KVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATK 207

Query: 122 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL-----APFDCWICLRGVKTMALRVE 176
           +I GHSDVM G  A      A E ++ Q  E S L     +P D ++ +RG++T+ +R+ 
Sbjct: 208 YIVGHSDVMLGT-AT-----ANEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTLGVRLA 261

Query: 177 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL--TGSLALSK 234
           + + NA K+A +LA+ P V  V +      PGHE       G+  + SF+   G      
Sbjct: 262 QHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAVT 321

Query: 235 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG--LTEDLVRISVGIEDVN 292
            +VE  ++F +  S+G  +SLI     +    I  ++R A     ++ L+R+ +G+EDV+
Sbjct: 322 ALVEGMQHFKMGFSWGGFESLI-----LGVFGIN-KLRTATNWDFSKPLIRLHIGLEDVD 375

Query: 293 DLISDLDKAL 302
           DLI+DL+   
Sbjct: 376 DLIADLEAGF 385

Length = 394

>gnl|CDD|180810 PRK07050, PRK07050, cystathionine beta-lyase; Provisional

 Score =  157 bits (399), Expect = 3e-45
 Identities = 87/310 (28%), Positives = 151/310 (48%), Gaps = 21/310 (6%)

Query: 4   LAAVTH----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           LAA++     L+  G++++  D+ YG        +    G+ V+  +      +A  I P
Sbjct: 90  LAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADLIQP 149

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            T+L+W+E+P +   ++ D+  I   A A G +  +DN+  + +  +P E G DI + + 
Sbjct: 150 NTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDISVQAL 209

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           TK+ +G SDV+ G        L  +L   +   G G++  DC + LRG+ ++ +R+    
Sbjct: 210 TKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPSLQVRLAAHD 269

Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHV--- 236
            +A ++AE+L + P +  V +  LP+ PGH        GAG + S +         V   
Sbjct: 270 RSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQVDAF 329

Query: 237 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTED----LVRISVGIEDVN 292
           VE  + F+I  S+G   SL          ++P +V   R         LVR+ +G+ED  
Sbjct: 330 VEALELFAIGWSWGGACSL----------AMPYDVASMRTAKWPHRGTLVRLYIGLEDEA 379

Query: 293 DLISDLDKAL 302
           DLI+DL++AL
Sbjct: 380 DLIADLEQAL 389

Length = 394

>gnl|CDD|102505 PRK06702, PRK06702, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  154 bits (391), Expect = 8e-44
 Identities = 98/338 (28%), Positives = 168/338 (49%), Gaps = 34/338 (10%)

Query: 2   AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIGPW 60
           A + AV ++  +G+ ++    +YGGT  L      K G+ V   N     DE+ +     
Sbjct: 88  AIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALANDK 147

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TKLV+ ES  NP   + + ++ ++ A       +VDN++ +P L +  E GA+I++HS T
Sbjct: 148 TKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHSTT 207

Query: 121 KFIAGHSDVMAGVLAVKGE-------------------------------RLAKELYFLQ 149
           K+I GH+  + G++   G                                 + K    L 
Sbjct: 208 KYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLL 267

Query: 150 NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGH 209
              G+ ++PF+ +I   G++T+ LR+E+  +NA  +A++LA H R++ VNY GL  +  +
Sbjct: 268 RDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNENY 327

Query: 210 ELHYSQ-AKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI 267
            L      KGA  VL+F + G L  +K  +   K  ++       ++ +  P   +H  +
Sbjct: 328 SLAQKYLKKGASGVLTFGIKGGLEAAKEFIANVKLATLVTHVADARTCVIHPASTTHRQL 387

Query: 268 PVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG 305
             E ++  G+T DL+R+SVGIEDV+D+I+DL+ AL  G
Sbjct: 388 SAEDQRLAGVTSDLIRLSVGIEDVSDIIADLEAALVGG 425

Length = 432

>gnl|CDD|215134 PLN02242, PLN02242, methionine gamma-lyase

 Score =  144 bits (364), Expect = 5e-40
 Identities = 97/310 (31%), Positives = 164/310 (52%), Gaps = 34/310 (10%)

Query: 1   MAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKT-GVVVKRVNTCDLDEVASAIG 58
           M+A+++V   L  +G  +VA + LYGGT  LL+   P+   +    V+  DL+ V  A+ 
Sbjct: 101 MSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVV 160

Query: 59  P-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMH 117
           P  TK+++ ES +NP   + DI ++A +AH  G  ++VDN+  +P++  P  LGAD+V+H
Sbjct: 161 PGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNT-FAPMVLSPARLGADVVVH 219

Query: 118 SATKFIAGHSDVMAGVLAVKG-ERLAKELYFLQNAEGSGLAP-------FDCWICLRGVK 169
           S +KFI+G +D++AG  AV G   L   +  L +     L P       F+  +  R + 
Sbjct: 220 SISKFISGGADIIAG--AVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFE--LSER-LP 274

Query: 170 TMALRVEKQQDNAQKIAEFLASHPRVK----KVNYAGLPEHPGHELHYSQAK---GAGSV 222
            ++LR+++    A + A+      R+K    KV Y GL +HP H L  S A    G G +
Sbjct: 275 HLSLRMKEHCRRAMEYAK------RMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGL 328

Query: 223 LSFLTGSLA----LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT 278
           L     +      L +++  +T++  + VS G  ++L+S     + + +  E + A G++
Sbjct: 329 LCLDMDTEERANRLMRYLQNSTQFGFMAVSLGYYETLMSCSGSSTSSELDPEEKAAAGIS 388

Query: 279 EDLVRISVGI 288
             LVR+SVG 
Sbjct: 389 PGLVRMSVGY 398

Length = 418

>gnl|CDD|181231 PRK08114, PRK08114, cystathionine beta-lyase; Provisional

 Score =  135 bits (341), Expect = 7e-37
 Identities = 93/315 (29%), Positives = 161/315 (51%), Gaps = 26/315 (8%)

Query: 5   AAVTH----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           AAV +     +  G+ ++     Y  T    S++  K GV     +     ++A  I P 
Sbjct: 88  AAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPN 147

Query: 61  TKLVWVESPTNPRQQICDIRKI--AEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHS 118
           TK+V++ESP +   ++ D+  I  A  +    A++++DN+  + VL + L+ G DI + +
Sbjct: 148 TKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQA 207

Query: 119 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG-LAPFD-CWICLRGVKTMALRVE 176
            TK++ GHSD M G  AV   R  ++L   +N+   G +   D  ++  RG++T+ +R+ 
Sbjct: 208 GTKYLVGHSDAMIGT-AVANARCWEQLR--ENSYLMGQMVDADTAYMTSRGLRTLGVRLR 264

Query: 177 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSK- 234
           + ++++ K+AE+LA HP V +VN+  LP   GHE       G+  + SF L   L   + 
Sbjct: 265 QHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQL 324

Query: 235 -HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQAR-----GLTEDLVRISVGI 288
            + ++    FS+  S+G  +SLI        A+ P E+   R       T  L+R+ +G+
Sbjct: 325 ANYLDNFSLFSMAYSWGGFESLIL-------ANQPEEIAAIRPAGEVDFTGTLIRLHIGL 377

Query: 289 EDVNDLISDLDKALR 303
           EDV+DLI+DL     
Sbjct: 378 EDVDDLIADLAAGFA 392

Length = 395

>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

 Score = 61.9 bits (151), Expect = 8e-11
 Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 12/147 (8%)

Query: 3   ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAI 57
               +   L  G+EIV  D  +         +  +TG  V+ +        DLD +   I
Sbjct: 100 VARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLI 159

Query: 58  GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL---ELGADI 114
            P TKLV +   +N    +  +++IAE+AH HGAL+LVD +  +  L  P+   ELG D 
Sbjct: 160 TPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHL--PIDVQELGCDF 217

Query: 115 VMHSATKFIAGHSDVMAGVLAVKGERL 141
           +  S  K++ G + +  GVL V+ E L
Sbjct: 218 LAFSGHKWLLGPTGI--GVLYVRKELL 242

Length = 405

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 34/149 (22%), Positives = 52/149 (34%), Gaps = 19/149 (12%)

Query: 2   AALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD--------LDE 52
            A  A    LLG G+E++   + +G             G     V   D           
Sbjct: 28  GANEAALLALLGPGDEVIVDANGHGSR---YWVAAELAGAKPVPVPVDDAGYGGLDVAIL 84

Query: 53  VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS----IMSPVLSRPL 108
                 P   L+ +   T     +  +++I ++A  +G LLLVD +              
Sbjct: 85  EELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIP 144

Query: 109 ELGADIVMHSATKFIAGHSDVMAGVLAVK 137
           E GAD+V  S  K + G      GV+ VK
Sbjct: 145 EGGADVVTFSLHKNLGG---EGGGVVIVK 170

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like

 Score = 50.9 bits (123), Expect = 3e-07
 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 23/120 (19%)

Query: 37  KTGVVVKRV-----NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 91
           +TG  +K V        DL+ +   +   TKLV V   +N    I  +++I E+AH  G 
Sbjct: 111 RTGAKLKVVPVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGV 170

Query: 92  LLLVDNSIMSPVLSRPL---ELGADIVMHSATKFIA--GHSDVMA---GVLAVKGERLAK 143
            +LVD +  +  +  P+   +LG D        F+A  GH  +     GVL  K E L +
Sbjct: 171 PVLVDGAQSAGHM--PVDVQDLGCD--------FLAFSGHKMLGPTGIGVLYGKEELLEE 220

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373

>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 16/134 (11%)

Query: 2   AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-----TCDLDEVASA 56
               ++   L  G+EI+  +  +         +  +TG  V+ +        DLD +   
Sbjct: 76  LVAISLGRSLKPGDEILVTEMEHHANLVPWQELAKRTGATVRVIPVDPNGLLDLDALEKL 135

Query: 57  IGPWTKLV---WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL---EL 110
           + P TKLV    V + T        + +I ++AH +GAL++VD +    V  RP+    L
Sbjct: 136 LTPRTKLVAITHVSNVTGTVN---PVEEIGKLAHEYGALVVVDAA--QAVGHRPIDVQAL 190

Query: 111 GADIVMHSATKFIA 124
           G D +  S  K   
Sbjct: 191 GVDFLAFSGHKLYG 204

This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370

>gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 7/135 (5%)

Query: 5   AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK----RVNTCDLDE--VASAIG 58
            A++   G G+E++     +        +   + G  VK       T +L    +AS + 
Sbjct: 95  RAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLS 154

Query: 59  PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP-VLSRPLELGADIVMH 117
           P T+LV V + +N    I D+  I E+ HA GAL++VD    +P  L      GAD +  
Sbjct: 155 PRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTC 214

Query: 118 SATKFIAGHSDVMAG 132
           SA KF   H  ++ G
Sbjct: 215 SAYKFFGPHMGILWG 229

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase [Unknown function, Enzymes of unknown specificity]. Length = 397

>gnl|CDD|234769 PRK00451, PRK00451, glycine dehydrogenase subunit 1; Validated

 Score = 50.1 bits (121), Expect = 7e-07
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 47  TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALL-LVDNSIMSPVLS 105
             DL+ + +A+   T  V V+ P N    I D+ +IAE+AHA GAL  +  + +   +L 
Sbjct: 191 VTDLEALEAAVDDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPVSLGLLK 249

Query: 106 RPLELGADIV 115
            P E GADIV
Sbjct: 250 PPGEYGADIV 259

Length = 447

>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 59  PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS-----IMSPVL-SRPLELGA 112
           P  K   + +PT       ++RKI E AH  G  +LVD +        P+L S     GA
Sbjct: 153 PDAKAAVITNPT-YYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGA 211

Query: 113 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 144
           DIV+ S  K +   +     ++ VKG+ +  +
Sbjct: 212 DIVVQSTHKTLPALT--QGSMIHVKGDLVNPD 241

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. Length = 294

>gnl|CDD|223480 COG0403, GcvP, Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 2   AALAAVTHLLGTGEEIVAGDDLYGGT-DRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           A L A         + +   D++  T D L +R     G+ ++ V+  DLD++ SA    
Sbjct: 152 AMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGL-GIEIEVVDADDLDDLESADDGD 210

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS-PVLSRPLELGADIVMHSA 119
              V V+ P        D+R + E AH+ GAL++V    ++  +L  P E GADIV+ SA
Sbjct: 211 VFGVLVQYPNTFGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSA 270

Query: 120 TKF 122
            +F
Sbjct: 271 QRF 273

Length = 450

>gnl|CDD|215460 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine desulfurase

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 14/111 (12%)

Query: 34  VTPKTGVVVKRVN-----TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA 88
           V  KTG V+K V        D++++   +   TKLV     +N    I  +  I   AHA
Sbjct: 142 VAQKTGAVLKFVGLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHA 201

Query: 89  HGALLLVDNSIMSPVLSRPLE-LGADIVMHSATK--------FIAGHSDVM 130
            GA +LVD     P +   ++ LGAD ++ S+ K        F+ G SD++
Sbjct: 202 VGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCGPTGIGFLWGKSDLL 252

Length = 424

>gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 19/108 (17%)

Query: 2   AALAAVTHLLGTGEEIVAGDDLY----------GGTDRLLSRVTPKTGVVVKRVNTCDLD 51
           A  AAV  L+  G+E++  +  Y          G     +  V    G  +      DLD
Sbjct: 97  AIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFAL------DLD 150

Query: 52  EVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVD 96
            + +A+ P T+ + V SP NP   +    ++  IAE+A  H  L++ D
Sbjct: 151 ALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITD 198

Length = 387

>gnl|CDD|224832 COG1921, SelA, Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 9/110 (8%)

Query: 40  VVVKRVNTCDLDEVASAIGPWTKLVW-VESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 98
           V V   N   L +   AI   T L+  V S       +    ++ E+AH  G  ++VD +
Sbjct: 136 VEVGTTNRTHLKDYELAINENTALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLA 195

Query: 99  IMSPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK 143
             + V   P     L LGAD+V  S  K + G     AG++  K E + K
Sbjct: 196 SGALVDKEPDLREALALGADLVSFSGDKLLGG---PQAGIIVGKKELIEK 242

Length = 395

>gnl|CDD|235292 PRK04366, PRK04366, glycine dehydrogenase subunit 2; Validated

 Score = 43.2 bits (103), Expect = 1e-04
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 21/80 (26%)

Query: 49  DLDEVASAIGPWTKLVWVESPTNP-------RQQICDIRKIAEMAHAHGALLLVD----N 97
           DL+ + +A+G  T  + +   TNP       R    +I +IAE+ H  G LL  D    N
Sbjct: 197 DLEALKAAVGEDTAALML---TNPNTLGLFER----NILEIAEIVHEAGGLLYYDGANLN 249

Query: 98  SIMSPVLSRPLELGADIVMH 117
           +I+     RP ++G D V+H
Sbjct: 250 AILGKA--RPGDMGFD-VVH 266

Length = 481

>gnl|CDD|224893 COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 12/73 (16%)

Query: 76  ICDIRKIAEMAHAHGALLLVDNSI--------MSPVLSRPLELGADIVMHSATKFIAGHS 127
             ++RKI E+ H +GA +L D +         M P  +  L  GAD V  S  K +A  S
Sbjct: 181 CYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESA--LNGGADFVTQSTHKLLAALS 238

Query: 128 DVMAGVLAVKGER 140
              A ++ VK  R
Sbjct: 239 --QASMIHVKDGR 249

Length = 557

>gnl|CDD|99737 cd00613, GDC-P, Glycine cleavage system P-protein, alpha- and beta-subunits

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 78  DIRKIAEMAHAHGALLLVDNSIMS-PVLSRPLELGADIVMHSATKFIAGHS--DVMAGVL 134
            I++IA++AH+ GAL+ VD   ++   L  P E GADIV+ +  K    H      AG  
Sbjct: 177 LIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTGVPHGGGGPGAGFF 236

Query: 135 AVKGE 139
           AVK E
Sbjct: 237 AVKKE 241

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <=> S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. Length = 398

>gnl|CDD|235432 PRK05367, PRK05367, glycine dehydrogenase; Provisional

 Score = 40.5 bits (96), Expect = 9e-04
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 75  QICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKF 122
           ++ D   +   AHA GAL+ V   +++  L   P E+GADI + SA +F
Sbjct: 220 EVRDYTALIAAAHARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRF 268

Length = 954

>gnl|CDD|216983 pfam02347, GDC-P, Glycine cleavage system P-protein

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 3/67 (4%)

Query: 76  ICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKF--IAGHSDVMAG 132
           I D +++ E+AH HG+L++V   +++  + + P E GADIV+ SA +F    G+    AG
Sbjct: 212 IEDYKELIEIAHQHGSLVVVAADLLALTILKPPGEFGADIVVGSAQRFGVPMGYGGPHAG 271

Query: 133 VLAVKGE 139
             AVK E
Sbjct: 272 FFAVKEE 278

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalyzed by this protein is:- Glycine + lipoylprotein <=> S-aminomethyldihydrolipoylprotein + CO2. Length = 429

>gnl|CDD|223935 COG1003, GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 7/44 (15%)

Query: 78  DIRKIAEMAHAHGALLLVD----NSIMSPVLSRPLELGADIVMH 117
           DIR+I E+ H  G  +  D    N+I+   L+RP ++G D V+H
Sbjct: 222 DIREICEIVHEAGGQVYYDGANLNAIVG--LARPGDMGFD-VVH 262

Length = 496

>gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 21/108 (19%)

Query: 2   AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK--------RVNTCDLDEV 53
           A  AA+  L+  G+E++  D  Y   D     +    G  V+        RV   D    
Sbjct: 103 ALFAAILALVRPGDEVIVFDPSY---DSYAPAIELAGGRAVRVALQPPDFRV---DWQRF 156

Query: 54  ASAIGPWTKLVWVESPTNP-----RQQICDIRKIAEMAHAHGALLLVD 96
           A+AI P T+L+ + +P NP          D+R + ++       +L D
Sbjct: 157 AAAISPRTRLIILNTPHNPSGTVWSAA--DMRALWQLIAGTDIYVLSD 202

Length = 386

>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 46/219 (21%), Positives = 84/219 (38%), Gaps = 29/219 (13%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTD-----RLLSRVTPKTGVVVKRVNTCDLDEVAS 55
           MA   A+      G+E++ G+  +   D       L    P   +        DL+++ +
Sbjct: 58  MANQLALMAHCRRGDEVICGEPAHIYFDETGGHAELGGAQPVP-LPGAEAGKLDLEDLEA 116

Query: 56  AI-------GPWTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVD------NS 98
           AI        P T L+ +E+  N          ++R+I  +A  HG  L +D       +
Sbjct: 117 AIRPVGDIHFPPTGLISLENTHNSAGGQVVSLEELREIRAIAREHGIPLHLDGARLANAA 176

Query: 99  IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL-- 156
           +   V+ + +   AD V  S +K +      +  VLA   + +A      +   G G+  
Sbjct: 177 VALGVIVKEITSYADSVSMSLSKGLGAP---VGSVLAGSDDFIAYARRQ-RKYLGGGMRQ 232

Query: 157 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRV 195
           A       LR ++    R+ +    A+++AE L     V
Sbjct: 233 AGVLAAAGLRALEEGVARLGRDHATARRLAEGLELLRGV 271

Length = 288

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 35/172 (20%), Positives = 64/172 (37%), Gaps = 30/172 (17%)

Query: 49  DLDEVASAIGPWTKLVWVESPTNP------RQQICDIRKIAEMAHAHGALLLVDNS---- 98
           DL+ + +A  P TKL+++ +P NP       +++    ++AE+A  HG L++ D +    
Sbjct: 121 DLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEEL---EELAELAKKHGILIISDEAYAEL 177

Query: 99  IMSPVLSRPLELGAD----IVMHSATKFIAGHSDVMA----GVLAVKGERLAKELYFLQN 150
           +        L L       IV+ S +K        +     G L    E L + L  L  
Sbjct: 178 VYDGEPPPALALLDAYERVIVLRSFSKTFG-----LPGLRIGYLIAPPEELLERLKKLLP 232

Query: 151 AEGSGLAPFDCWICLRGVKTMALRVEKQQD----NAQKIAEFLASHPRVKKV 198
              SG +          +      +E+ ++        + E L     +  V
Sbjct: 233 YTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELGPLVVV 284

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 49  DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVD 96
           DL+++ +AI P TK + + SP NP   +     ++ I E+A  H  +++ D
Sbjct: 152 DLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISD 202

Length = 393

>gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 56/228 (24%), Positives = 90/228 (39%), Gaps = 29/228 (12%)

Query: 6   AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG 58
            +T LL  G+E+V  D  Y      LS +   TG  V+            DLD + + + 
Sbjct: 85  VLTALLRPGDEVVVVDPAY----HSLSHLAVATGCEVRPWPLLAVRGFRPDLDALRALLT 140

Query: 59  PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIM-----SPVLSRPLEL 110
           P T+ V V  P NP         + ++ E A   GA+LL DN+       +P L  P  L
Sbjct: 141 PRTRAVVVNFPHNPTGASVTPRELDELLERAARSGAVLLWDNAFADLVHDAPPLPDPSAL 200

Query: 111 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT 170
              ++         G   +  G   V    L  EL  L++     L+P    +    V+ 
Sbjct: 201 YDRVISFGTLSKAFGLPGLRVG-WCVGPADLLAELVRLRDYTTLSLSPLVELLAEVAVEH 259

Query: 171 ----MALRVEKQQDNAQKIAEFLASHPRVKKV-----NYAGLPEHPGH 209
               +  R+ + + N +++ ++ A+HP V +        A  P  PGH
Sbjct: 260 ADALIGPRLAEARANRRRLLDWAAAHPDVVRCTPPEGGVAAFPRFPGH 307

Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359

>gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated

 Score = 37.8 bits (89), Expect = 0.004
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 38  TGVVVKRVN-TCDLDEVASAIGPWTKLVWVESPTNP 72
             V V   +   DLD + +A+ P T+LV++ +P NP
Sbjct: 131 KPVEVPAKDYGHDLDAMLAAVTPRTRLVFIANPNNP 166

Length = 367

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 13/71 (18%)

Query: 39  GVVVKRVN-------TCDLDEVASAIGPWT---KLVWVESPTNPRQQIC---DIRKIAEM 85
           G  V R           D D + +A+   T   K+V   SP NP   +    ++ K+ ++
Sbjct: 111 GGEVVRYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDL 170

Query: 86  AHAHGALLLVD 96
           A  H  LLLVD
Sbjct: 171 AKEHNILLLVD 181

Length = 357

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	307
PRK08861	388	cystathionine gamma-synthase; Provisional	100.0
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	100.0
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	100.0
PRK08045	386	cystathionine gamma-synthase; Provisional	100.0
PLN02509	464	cystathionine beta-lyase	100.0
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	100.0
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	100.0
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	100.0
PRK07671	377	cystathionine beta-lyase; Provisional	100.0
PRK08064	390	cystathionine beta-lyase; Provisional	100.0
PRK08776	405	cystathionine gamma-synthase; Provisional	100.0
PRK09028	394	cystathionine beta-lyase; Provisional	100.0
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	100.0
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK08249	398	cystathionine gamma-synthase; Provisional	100.0
PRK08114	395	cystathionine beta-lyase; Provisional	100.0
PRK08574	385	cystathionine gamma-synthase; Provisional	100.0
PRK07811	388	cystathionine gamma-synthase; Provisional	100.0
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	100.0
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	100.0
PRK05939	397	hypothetical protein; Provisional	100.0
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	100.0
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK05967	395	cystathionine beta-lyase; Provisional	100.0
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	100.0
PRK06234	400	methionine gamma-lyase; Provisional	100.0
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	100.0
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	100.0
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	100.0
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	100.0
PRK06460	376	hypothetical protein; Provisional	100.0
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK07503	403	methionine gamma-lyase; Provisional	100.0
PRK07049	427	methionine gamma-lyase; Validated	100.0
PRK06767	386	methionine gamma-lyase; Provisional	100.0
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	100.0
PRK07050	394	cystathionine beta-lyase; Provisional	100.0
PRK06434	384	cystathionine gamma-lyase; Validated	100.0
PRK07582	366	cystathionine gamma-lyase; Validated	100.0
PLN02242	418	methionine gamma-lyase	100.0
PRK05968	389	hypothetical protein; Provisional	100.0
PRK07269	364	cystathionine gamma-synthase; Reviewed	100.0
PRK08247	366	cystathionine gamma-synthase; Reviewed	100.0
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	100.0
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.98
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.97
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.97
PRK05957	389	aspartate aminotransferase; Provisional	99.97
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.97
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.97
PRK07324	373	transaminase; Validated	99.96
PRK06207	405	aspartate aminotransferase; Provisional	99.96
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.96
PRK07681	399	aspartate aminotransferase; Provisional	99.96
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.96
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.96
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.96
PLN00175	413	aminotransferase family protein; Provisional	99.96
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.96
PRK06108	382	aspartate aminotransferase; Provisional	99.96
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.96
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.96
PLN02187	462	rooty/superroot1	99.96
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.96
PLN02651	364	cysteine desulfurase	99.96
PRK06290	410	aspartate aminotransferase; Provisional	99.95
PRK05942	394	aspartate aminotransferase; Provisional	99.95
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.95
PRK08361	391	aspartate aminotransferase; Provisional	99.95
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.95
PRK08960	387	hypothetical protein; Provisional	99.95
PRK08068	389	transaminase; Reviewed	99.95
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.95
PRK08912	387	hypothetical protein; Provisional	99.95
PRK07682	378	hypothetical protein; Validated	99.95
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.95
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.95
PRK12414	384	putative aminotransferase; Provisional	99.95
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.95
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.95
PRK05764	393	aspartate aminotransferase; Provisional	99.95
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.95
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.95
PRK06348	384	aspartate aminotransferase; Provisional	99.95
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.95
PRK07550	386	hypothetical protein; Provisional	99.95
PLN02656	409	tyrosine transaminase	99.95
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.95
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.95
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.95
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.95
PRK06225	380	aspartate aminotransferase; Provisional	99.95
PTZ00433	412	tyrosine aminotransferase; Provisional	99.95
PRK02948	381	cysteine desulfurase; Provisional	99.95
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.95
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.95
PTZ00377	481	alanine aminotransferase; Provisional	99.95
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.95
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.95
PRK09265	404	aminotransferase AlaT; Validated	99.95
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.94
PRK07337	388	aminotransferase; Validated	99.94
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.94
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.94
PRK08363	398	alanine aminotransferase; Validated	99.94
PRK07568	397	aspartate aminotransferase; Provisional	99.94
PRK07683	387	aminotransferase A; Validated	99.94
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.94
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.94
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.94
PRK06107	402	aspartate aminotransferase; Provisional	99.94
PRK08636	403	aspartate aminotransferase; Provisional	99.94
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.94
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.94
PRK09082	386	methionine aminotransferase; Validated	99.94
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.94
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.94
PRK07777	387	aminotransferase; Validated	99.94
PRK08175	395	aminotransferase; Validated	99.94
PRK06836	394	aspartate aminotransferase; Provisional	99.94
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.94
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.94
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.94
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.94
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.94
PRK09148	405	aminotransferase; Validated	99.94
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.94
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.94
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.94
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.94
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.94
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.94
PRK06855	433	aminotransferase; Validated	99.94
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.94
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.94
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.93
PLN02409	401	serine--glyoxylate aminotransaminase	99.93
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.93
PRK08354	311	putative aminotransferase; Provisional	99.93
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.93
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.93
PRK09105	370	putative aminotransferase; Provisional	99.93
PRK03321	352	putative aminotransferase; Provisional	99.93
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.93
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.93
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.93
PRK05839	374	hypothetical protein; Provisional	99.93
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.93
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.93
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.93
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.93
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.93
PRK14012	404	cysteine desulfurase; Provisional	99.93
PLN02231	534	alanine transaminase	99.93
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.93
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.92
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.92
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.92
PRK07179	407	hypothetical protein; Provisional	99.92
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.92
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.92
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.92
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.92
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.92
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.92
PLN02483	489	serine palmitoyltransferase	99.92
PLN02721	353	threonine aldolase	99.92
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.92
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.92
PRK07908	349	hypothetical protein; Provisional	99.92
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.91
PLN02672	1082	methionine S-methyltransferase	99.91
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.91
PTZ00376	404	aspartate aminotransferase; Provisional	99.91
PRK09275	527	aspartate aminotransferase; Provisional	99.91
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.91
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.91
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.91
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.91
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.91
PRK08637	388	hypothetical protein; Provisional	99.91
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.91
PLN02397	423	aspartate transaminase	99.91
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.91
PLN02724	805	Molybdenum cofactor sulfurase	99.9
PRK13392	410	5-aminolevulinate synthase; Provisional	99.9
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.9
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.9
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.9
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.9
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.9
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.9
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	99.89
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.89
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.89
PRK09064	407	5-aminolevulinate synthase; Validated	99.89
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.89
PLN02368	407	alanine transaminase	99.89
PLN02822	481	serine palmitoyltransferase	99.89
PRK13393	406	5-aminolevulinate synthase; Provisional	99.89
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.89
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.89
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.89
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.88
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.88
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.88
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.88
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.88
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.88
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.88
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.88
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.87
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.87
PLN02955	476	8-amino-7-oxononanoate synthase	99.87
PRK04311	464	selenocysteine synthase; Provisional	99.87
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.86
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.86
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.85
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.85
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.85
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.85
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.85
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.84
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.84
PRK03080	378	phosphoserine aminotransferase; Provisional	99.84
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.83
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.83
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.82
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.81
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.81
PRK10534	333	L-threonine aldolase; Provisional	99.81
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.81
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.8
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.8
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.79
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.79
PLN02271	586	serine hydroxymethyltransferase	99.78
PRK07505	402	hypothetical protein; Provisional	99.78
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.78
PRK02769	380	histidine decarboxylase; Provisional	99.78
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.78
PRK02627	396	acetylornithine aminotransferase; Provisional	99.78
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.77
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.77
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.77
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.76
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.76
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.75
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.75
PLN03032	374	serine decarboxylase; Provisional	99.74
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.73
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.73
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.73
PRK05367	954	glycine dehydrogenase; Provisional	99.72
PLN02880	490	tyrosine decarboxylase	99.71
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.7
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.7
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.7
PRK12566	954	glycine dehydrogenase; Provisional	99.69
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.69
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.69
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.69
PLN02590	539	probable tyrosine decarboxylase	99.68
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.68
PRK05367	954	glycine dehydrogenase; Provisional	99.68
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.68
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.67
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.66
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.65
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.65
PRK04260	375	acetylornithine aminotransferase; Provisional	99.65
PLN00144	382	acetylornithine transaminase	99.63
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.63
PLN02624	474	ornithine-delta-aminotransferase	99.62
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.61
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.61
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.61
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.6
PLN02263	470	serine decarboxylase	99.59
PRK15029	755	arginine decarboxylase; Provisional	99.58
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.58
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.57
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.57
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.56
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.56
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.54
PLN02452	365	phosphoserine transaminase	99.54
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.54
PRK13237	460	tyrosine phenol-lyase; Provisional	99.53
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.53
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.52
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.52
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.51
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	99.5
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.5
PRK13578	720	ornithine decarboxylase; Provisional	99.49
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.49
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.49
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.48
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	99.47
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.47
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.47
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.47
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.47
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.45
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.45
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.45
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.43
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	99.43
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.42
PRK12462	364	phosphoserine aminotransferase; Provisional	99.42
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.41
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.4
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.37
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.37
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.37
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	99.37
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.36
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.35
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.34
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.31
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.31
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.29
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.28
PRK06541	460	hypothetical protein; Provisional	99.28
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.27
PRK15400	714	lysine decarboxylase CadA; Provisional	99.27
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	99.26
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.25
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.25
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	99.25
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.23
PRK06062	451	hypothetical protein; Provisional	99.23
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	99.22
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.22
PRK12403	460	putative aminotransferase; Provisional	99.22
PRK07678	451	aminotransferase; Validated	99.21
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.21
PRK05965	459	hypothetical protein; Provisional	99.2
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.2
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.2
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.18
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.17
PRK06105	460	aminotransferase; Provisional	99.17
PRK08297	443	L-lysine aminotransferase; Provisional	99.16
PRK12566	954	glycine dehydrogenase; Provisional	99.16
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.16
PRK07482	461	hypothetical protein; Provisional	99.15
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.14
PRK06149	972	hypothetical protein; Provisional	99.14
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.14
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	99.14
PRK07481	449	hypothetical protein; Provisional	99.13
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.12
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	99.11
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.11
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.11
PRK07046	453	aminotransferase; Validated	99.11
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.1
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.09
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.07
PRK06148	1013	hypothetical protein; Provisional	99.07
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	99.06
COG4100	416	Cystathionine beta-lyase family protein involved i	99.06
PRK06917	447	hypothetical protein; Provisional	99.06
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.06
PRK07480	456	putative aminotransferase; Validated	99.04
PRK07483	443	hypothetical protein; Provisional	99.04
PRK07036	466	hypothetical protein; Provisional	99.02
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.02
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	99.01
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.01
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	98.94
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	98.93
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	98.85
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	98.81
KOG0629	510	consensus Glutamate decarboxylase and related prot	98.79
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	98.79
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	98.78
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	98.78
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	98.75
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	98.58
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	98.43
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	98.37
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	98.28
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	98.02
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	97.83
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	97.73
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	96.22
PF02310	121	B12-binding: B12 binding domain; InterPro: IPR0061	86.92

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=1.8e-48  Score=337.29  Aligned_cols=305  Identities=41%  Similarity=0.654  Sum_probs=280.5

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .++++++++||+|+++.+.|++....+.......|++++.++..|+++++++++++|++|++++|+||||.+.|+
T Consensus        78 ~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl  157 (388)
T PRK08861         78 TSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLETPSNPLVRVVDI  157 (388)
T ss_pred             HHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCcccCH
Confidence            3566 455568899999999999998777666566667889999999889999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  159 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (307)
                      ++|.++|+++|+++|+|++|+.+....+...|+|+++.|++||++|+.++++|+++++++.+.+.+.......|..++++
T Consensus       158 ~~I~~la~~~gi~vIvDea~~~~~~~~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~  237 (388)
T PRK08861        158 AELCQKAKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPF  237 (388)
T ss_pred             HHHHHHHHHcCCEEEEECCccccccCCCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChH
Confidence            99999999999999999999998877777889999999999999999989999999887777777777777888999999


Q ss_pred             hHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC-CHHHHHHHHh
Q 021783          160 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVE  238 (307)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  238 (307)
                      .+|+..++++++..|++++.+++..+.++|+.++.+.+++||+++++|++.++.++..+.+++++|.++ +.+.+.+|++
T Consensus       238 ~a~l~~rgl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~  317 (388)
T PRK08861        238 DSYMTLRGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVK  317 (388)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCCHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999888888999999995 5677899999


Q ss_pred             cCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       239 ~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      .|+...+.+++|+..++.++|...+|..++.+.+...|..++.||+|+|+||.|.+++.|.++|+++
T Consensus       318 ~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE~~~dli~Dl~~al~~~  384 (388)
T PRK08861        318 ALALFSLAESLGGVESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVGLEDAQDLIADLDQAFAKA  384 (388)
T ss_pred             cCCcceEccCCCCCcceeeCCCcccccccCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999764

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=100.00  E-value=6.3e-48  Score=327.14  Aligned_cols=305  Identities=51%  Similarity=0.829  Sum_probs=287.4

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcC-CCceEEEEeCCCCCcccccc
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~   78 (307)
                      |||+ .++++++++||+|++++..|++.+..+....+++|+++.+++..+.+++++++. ++|++|++++|+||+..+.|
T Consensus        88 maAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~D  167 (396)
T COG0626          88 MAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPD  167 (396)
T ss_pred             HHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCccccccc
Confidence            7888 457889999999999999999999999999999999999999988888888887 59999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHH-hcCCCCC
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-AEGSGLA  157 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~-~~~~~~~  157 (307)
                      +++|+++|+++|+.+++|++.+.|.+..+.++|+|+++.|.+|+++|+..+.+|+++++++.+.+.+....+ ..|..++
T Consensus       168 I~~i~~~A~~~g~~vvVDNTfatP~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~  247 (396)
T COG0626         168 IPAIARLAKAYGALVVVDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLS  247 (396)
T ss_pred             HHHHHHHHHhcCCEEEEECCcccccccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCCC
Confidence            999999999999999999999999999999999999999999999999999999888888888887755555 5889999


Q ss_pred             hhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHH
Q 021783          158 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVV  237 (307)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (307)
                      +..+|+.+++++++..|++++.+|++.+.++|+.++.+.+++||+++++|+++++.++..+.|++++|.+.+.+.+.+|+
T Consensus       248 p~dA~l~lRGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~~~~~~f~  327 (396)
T COG0626         248 PFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNEEAAKKFL  327 (396)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCChHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998778999999997745699999


Q ss_pred             hcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       238 ~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      +.|+...+..++|+..++.++|..++|..++...+...|..++.||+|+|+||++.+++.|.++|+++
T Consensus       328 ~~L~l~~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGlEd~eDLi~Dl~~Al~~~  395 (396)
T COG0626         328 DSLKLFKLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGLEDVEDLIADLEQALAKA  395 (396)
T ss_pred             HhCCccEEeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999864

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=100.00  E-value=1.5e-47  Score=332.70  Aligned_cols=306  Identities=74%  Similarity=1.146  Sum_probs=280.5

Q ss_pred             CcHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         1 ~aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      |+|+.+++.++++||+|+++++.|+++...+...++..|+++++++..|++++++++++++++|++++|+||+|.+.|++
T Consensus        72 ~~al~~~l~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~  151 (378)
T TIGR01329        72 MAALDVITRLLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIR  151 (378)
T ss_pred             HHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHH
Confidence            35665555678999999999999998887777777889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhh
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  160 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (307)
                      +|.++|+++|+++|+|++|+.+....+..+|+|++++|++|+++|+.++++|+++++++.+.+.+.......+...++..
T Consensus       152 ~I~~la~~~g~~vivD~a~~~~~~~~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~  231 (378)
T TIGR01329       152 KISEMAHAQNALVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFD  231 (378)
T ss_pred             HHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHH
Confidence            99999999999999999998887666667799999999999999988889999999877776666666665677788889


Q ss_pred             HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcC
Q 021783          161 CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT  240 (307)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  240 (307)
                      +++...+++.+..|+++..+++..+.++|+.++.+.++.+|+++++|+++++.++..+.+++++|.+.+.+.+.++.+.|
T Consensus       232 a~l~~~~l~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~~~~~~~~~~L  311 (378)
T TIGR01329       232 CWLLLRGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEAT  311 (378)
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999998877778899999998777789999999


Q ss_pred             CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcCC
Q 021783          241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP  306 (307)
Q Consensus       241 ~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~~  306 (307)
                      +..++.++.|+..++.++|...+|..++.+.+...|..++.||+|+|+||.+.+++.|.++|++++
T Consensus       312 ~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~~  377 (378)
T TIGR01329       312 KLFSITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGIEDVDDLISDLDIAFVTAP  377 (378)
T ss_pred             cCcccccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999998888999999999999999999999999999998875

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=6.4e-47  Score=328.76  Aligned_cols=305  Identities=41%  Similarity=0.629  Sum_probs=277.4

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .++.++++|||+|++++|+|+++...+.......|+++..++..|++++++.+++++++|++++|+||||.+.|+
T Consensus        77 ~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di  156 (386)
T PRK08045         77 MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDI  156 (386)
T ss_pred             HHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEECCCCCCCEecCH
Confidence            3466 445568899999999999998877777666666778888888789999999999899999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  159 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (307)
                      ++|.++|+++|+++|+|++|+.+....+..+++|+++.|++|+++|++++++|+++++++.+.+.+.......+...++.
T Consensus       157 ~~I~~ia~~~g~~vivDeay~~~~~~~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~  236 (386)
T PRK08045        157 AKICHLAREAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAF  236 (386)
T ss_pred             HHHHHHHHHcCCEEEEECCCCccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHH
Confidence            99999999999999999999988777677789999999999999999999999998876767777777777778889999


Q ss_pred             hHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC-CHHHHHHHHh
Q 021783          160 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVE  238 (307)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  238 (307)
                      .+|++.++++.+..|++++.+|+..+.++|+.++.+.+++||+++++|+++++.++.++.|++++|.++ +.+.+.+|++
T Consensus       237 ~~~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~  316 (386)
T PRK08045        237 DSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLG  316 (386)
T ss_pred             HHHHHHhhhccHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998888888999999995 4566789999


Q ss_pred             cCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       239 ~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      .|+...+.+++|+..++.++|...+|..++.+.+...|.+++.||+|+|+||.+.+++.|.++|+++
T Consensus       317 ~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~  383 (386)
T PRK08045        317 GLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA  383 (386)
T ss_pred             hccceeEeccCCCCceeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999988899999999999999999999999999999864

>PLN02509 cystathionine beta-lyase

Probab=100.00  E-value=6.5e-47  Score=332.50  Aligned_cols=306  Identities=86%  Similarity=1.297  Sum_probs=281.2

Q ss_pred             CcHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         1 ~aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      |+|+.++..++++||+|+++++.|+++...+...+...|++++.++..|+++++++++++|++|++++|+||+|.+.|++
T Consensus       158 ~aAi~~il~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~  237 (464)
T PLN02509        158 MAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQTKLVWLESPTNPRQQISDIR  237 (464)
T ss_pred             HHHHHHHHHHhCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHH
Confidence            45676666788999999999999998887776667789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhh
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  160 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (307)
                      +|.++|+++|+++|+|++|+.+....+...|+|++++|++|+++|+.++.+|+++++++.+.+.+...+...+..+++..
T Consensus       238 ~I~~lAk~~g~~lIVD~A~a~~~~~~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~  317 (464)
T PLN02509        238 KIAEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFD  317 (464)
T ss_pred             HHHHHHHHcCCEEEEECCccccccCChhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHH
Confidence            99999999999999999999888776677899999999999999888888999998877666666666666677789999


Q ss_pred             HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcC
Q 021783          161 CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT  240 (307)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  240 (307)
                      +|+...+++.+..|++++.++++.+.++|+.++.+.+++||+|.++|++.++.++.++.|++++|.+.+.+.+..|++.|
T Consensus       318 A~l~lr~L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~~~~~~~~f~~~l  397 (464)
T PLN02509        318 CWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETT  397 (464)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999888888999999998788889999999


Q ss_pred             CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcCC
Q 021783          241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP  306 (307)
Q Consensus       241 ~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~~  306 (307)
                      +...+.+++|+..++.++|...+|..++.+.+...|.+++.||+|+|+||.+.+++.|.++|+.-+
T Consensus       398 ~l~~~a~slG~~~SLi~~p~~~sh~~~~~~~~~~~Gi~~~liRlSvGlE~~~DLi~Dl~~Al~~~~  463 (464)
T PLN02509        398 KYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFRTGP  463 (464)
T ss_pred             CcceEcccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHcccC
Confidence            999999999999999999999999999999999999999999999999999999999999998654

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=100.00  E-value=6e-47  Score=325.71  Aligned_cols=303  Identities=49%  Similarity=0.806  Sum_probs=270.9

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |||+ +++++++++||+|++++..|.+....+...+...|+++.+++..|+++++++++++|++|++++|.||+..+.|+
T Consensus        80 maAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl  159 (386)
T PF01053_consen   80 MAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDL  159 (386)
T ss_dssp             HHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---H
T ss_pred             HHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccH
Confidence            6888 777889999999999999999999999888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcC-CEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcC-hhHHHHHHHHHHhcCCCCC
Q 021783           80 RKIAEMAHAHG-ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG-ERLAKELYFLQNAEGSGLA  157 (307)
Q Consensus        80 ~~l~~~~~~~~-~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~  157 (307)
                      ++|+++|+++| +++++|++.+.+...++..+|+|+++.|.+|+++|...+.+|++++++ ..+.+.+.......|..++
T Consensus       160 ~~i~~~a~~~g~~~~vVDnT~atp~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~  239 (386)
T PF01053_consen  160 EAIAKLAKEHGDILVVVDNTFATPYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLS  239 (386)
T ss_dssp             HHHHHHHHHTTT-EEEEECTTTHTTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--
T ss_pred             HHHHHHHHHhCCceEEeeccccceeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccch
Confidence            99999999998 999999999999888999999999999999999999999999999987 5677777778888899999


Q ss_pred             hhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHH-HHHHH
Q 021783          158 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA-LSKHV  236 (307)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  236 (307)
                      +..+|+..++++++..|++++.+|++++.++|+.++.+.++.+|+++++|+++++.++.++.+++++|.+++.. .+..|
T Consensus       240 p~da~ll~rgl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~f  319 (386)
T PF01053_consen  240 PFDAWLLLRGLRTLPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARRF  319 (386)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHHH
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHhH
Confidence            99999999999999999999999999999999999999999999999999999999998888899999998775 89999


Q ss_pred             HhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 021783          237 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  303 (307)
Q Consensus       237 ~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  303 (307)
                      ++.|+...+.+++|+..++.++|...+|..++.+.+...|..++.||+|+|+||.+.+++.|.++|+
T Consensus       320 ~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGlEd~~dLi~Dl~~AL~  386 (386)
T PF01053_consen  320 LDALKLFSIAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGLEDPDDLIADLEQALE  386 (386)
T ss_dssp             HHH-SSSEESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHHHHHHHHHH
T ss_pred             HhhhhhHhhhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEeccCCHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999985

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=100.00  E-value=1.2e-46  Score=326.67  Aligned_cols=306  Identities=45%  Similarity=0.752  Sum_probs=281.9

Q ss_pred             CcHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         1 ~aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      |+|+.+++++++|||+|+++++.|++....+...+...|+++++++..|++++++++++++++|++++|+||+|.+.|++
T Consensus        75 ~~Al~~~l~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~  154 (380)
T PRK06176         75 LAGIHAVFSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIKKAIKPNTKALYLETPSNPLLKITDLA  154 (380)
T ss_pred             HHHHHHHHHHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCCCCHHHHHHhcCcCceEEEEECCCCCCceecCHH
Confidence            46776666788999999999999998887787788899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhh
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  160 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (307)
                      +|.++|+++|+++|+|++|+.+....+..+|+|++++|++|+++|+..+.+|+++.+++.+.+.+...+...+..+++..
T Consensus       155 ~I~~la~~~gi~vivD~t~a~~~~~~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~  234 (380)
T PRK06176        155 QCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQD  234 (380)
T ss_pred             HHHHHHHHcCCEEEEECCccccccCCccccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHH
Confidence            99999999999999999999877666667899999999999998888788999998877777777777777777788889


Q ss_pred             HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcC
Q 021783          161 CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT  240 (307)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  240 (307)
                      +|+...+++.+..|++++.+++.++.++++.++.+..+++|++.++|++.++.++.++.+++++|.+++.+.+.+|++.|
T Consensus       235 ~~l~~~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~f~~~l  314 (380)
T PRK06176        235 SWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKNDSEAVAFVESL  314 (380)
T ss_pred             HHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999998887788999999998778889999999


Q ss_pred             CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcCC
Q 021783          241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP  306 (307)
Q Consensus       241 ~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~~  306 (307)
                      +...+.+++|+..++.++|...+|..++.+.+...|..++.||+|+|+||.+.+++.|.++|++.+
T Consensus       315 ~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dli~dl~~Al~~~~  380 (380)
T PRK06176        315 KLFILGESLGGVESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAFAKIG  380 (380)
T ss_pred             CcceEccCCCCCCceeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHhhcC
Confidence            999999999999999999999999999999999999999999999999999999999999998753

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=100.00  E-value=1.4e-46  Score=326.57  Aligned_cols=304  Identities=42%  Similarity=0.696  Sum_probs=277.8

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .++.+++++||+|+++.|+|+++...+....+..|+++..++..|+++++++++++|++|++++|+||||.+.|+
T Consensus        76 ~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl  155 (382)
T TIGR02080        76 MSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDI  155 (382)
T ss_pred             HHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCH
Confidence            3566 455568899999999999998888777666777788999888889999999999899999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  159 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (307)
                      ++|.++|+++|+++++|++|+.+....+...|+|++++|++|+++|++++++|+++.+++.+.+.+.......+..+++.
T Consensus       156 ~~I~~la~~~g~~vvvD~a~~~~~~~~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~  235 (382)
T TIGR02080       156 AKICHLAKAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAF  235 (382)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHH
Confidence            99999999999999999999988766666678999999999999989999999999987778777777777778889999


Q ss_pred             hHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC-CHHHHHHHHh
Q 021783          160 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVE  238 (307)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  238 (307)
                      .+|+.+++++.+..|++++.+|+..+.++|+.++.+..++||++.++|+++++.++..+.+++++|.++ +.+.+.+|++
T Consensus       236 ~a~l~lr~l~tl~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~  315 (382)
T TIGR02080       236 DSYLTLRGLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGEQTVRRFLG  315 (382)
T ss_pred             HHHHHHcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCcHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998888888999999995 4666789999


Q ss_pred             cCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 021783          239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  304 (307)
Q Consensus       239 ~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  304 (307)
                      .|+...+.+++|+..++.++|...+|..++.+.+...|..++.||+|+|+||.+.+++.|.++|++
T Consensus       316 ~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGlE~~~dl~~dl~~al~~  381 (382)
T TIGR02080       316 GLSLFTLAESLGGVESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVGLEDADDLIADLEQGLRA  381 (382)
T ss_pred             cCCcceEeccCCCCcceeECCCccCcccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999998889999999999999999999999999999975

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK07671 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=2.9e-46  Score=324.27  Aligned_cols=303  Identities=49%  Similarity=0.823  Sum_probs=278.9

Q ss_pred             CcHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         1 ~aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      |+|+.+++.+++|||+|+++++.|++.+..+...++..|++++.++..|+++++++++++|++|++++|+||+|.+.|++
T Consensus        75 ~aai~~~~~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~  154 (377)
T PRK07671         75 MAAITAVMMLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRPNTKAIYVETPTNPLLKITDIK  154 (377)
T ss_pred             HHHHHHHHHHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHH
Confidence            45665666788999999999999987877666777889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhh
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  160 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (307)
                      +|.++|+++|+++|+|++|+.+....+..+++|+++.|++|+++|+.++.+|+++++++.+.+.+...+...+..+++..
T Consensus       155 ~I~~la~~~g~~lvvD~a~~~~~~~~p~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~  234 (377)
T PRK07671        155 KISTIAKEKGLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQD  234 (377)
T ss_pred             HHHHHHHHcCCEEEEECCCCccccCChhhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHH
Confidence            99999999999999999998776666667799999999999998888778999988877787778878878888899999


Q ss_pred             HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcC
Q 021783          161 CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT  240 (307)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  240 (307)
                      +|+..++++.+..|++++.+|++.+.++|+.++.+..+++|++.++|++.++.++..+.|++++|.+.+.+.+..|++.+
T Consensus       235 a~l~~~~l~tl~~R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~f~~~l  314 (377)
T PRK07671        235 SWLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVGSEETANKVLERL  314 (377)
T ss_pred             HHHHHcCcChHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeCCHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999998888788999999998878899999999


Q ss_pred             CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 021783          241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  303 (307)
Q Consensus       241 ~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  303 (307)
                      +...+.+++|...++.++|...+|..++.+.+...|..++.||+|+|+||.+.+++.|.++|+
T Consensus       315 ~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~  377 (377)
T PRK07671        315 QYFTLAESLGAVESLISIPSQMTHASIPADRRKELGITDGLIRISVGIEDGEDLIEDLAQALA  377 (377)
T ss_pred             CcceEccCCCCCCeEeECCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHhC
Confidence            999999999999999999999999999998888999999999999999999999999999874

>PRK08064 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=4.1e-46  Score=324.97  Aligned_cols=305  Identities=46%  Similarity=0.782  Sum_probs=278.0

Q ss_pred             CcHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         1 ~aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      |+|+.+++.++++||+|+++++.|++++..+...++..|++++.++..|+++++++++++|++|++++|+||||.+.|++
T Consensus        79 ~~ai~~~l~~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~  158 (390)
T PRK08064         79 MAAISTAFLLLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEVAQNIKPNTKLFYVETPSNPLLKVTDIR  158 (390)
T ss_pred             HHHHHHHHHHhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCcEeccHH
Confidence            45664444478999999999999998888887778889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhh
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  160 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (307)
                      +|.++|+++|+++|+|++|+.+....+.++|+|+++.|+||+++|++|+++|+++++++.+.+.+.......+...++..
T Consensus       159 ~I~~la~~~g~~vvvD~a~~~~~~~~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~  238 (390)
T PRK08064        159 GVVKLAKAIGCLTFVDNTFLTPLLQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQD  238 (390)
T ss_pred             HHHHHHHHcCCEEEEECCCCcccccCchhhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHH
Confidence            99999999999999999999887655567799999999999999998888999999877777777777777777788889


Q ss_pred             HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcC
Q 021783          161 CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT  240 (307)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  240 (307)
                      +++...+++.+..|++++.+++..+.++|+.++.+.++++++++++|++.++.++.++.+++++|.+++.+.+..|++.+
T Consensus       239 a~l~~~gl~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~f~~~l  318 (390)
T PRK08064        239 CWLVLRGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQSEEAVRQFVSHV  318 (390)
T ss_pred             HHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999998888888999999998888889999999


Q ss_pred             CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       241 ~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      +...+.+++|+.+++.++|...+|...+.+.+...|.+++.+|+|+|+||.+++++.|.++|+++
T Consensus       319 ~l~~~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~~  383 (390)
T PRK08064        319 KLPVFAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSYV  383 (390)
T ss_pred             CcceEcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence            98888999999999999999899999998888888999999999999999999999999999764

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=4.6e-46  Score=325.08  Aligned_cols=305  Identities=40%  Similarity=0.677  Sum_probs=276.6

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .++.++++|||+|+++.|.|++....+...++..|.+++.++..|++++++.++++|++|++++|+||||.+.|+
T Consensus        85 ~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl  164 (405)
T PRK08776         85 MGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDL  164 (405)
T ss_pred             HHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCH
Confidence            3566 455568899999999999999877666677778899999999989999999998899999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  159 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (307)
                      ++|.++|+++|+++|+|++|+.+....+..+|+|+++.|.+|+++|++++.+|+++.+++.+.+.+.......+..++++
T Consensus       165 ~~I~~la~~~gi~vIvD~a~a~~~~~~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~  244 (405)
T PRK08776        165 RFVIEAAHKVGALTVVDNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPF  244 (405)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCCcccccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHH
Confidence            99999999999999999999987765666789999999999999888888899998887777777766666666678899


Q ss_pred             hHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC-CHHHHHHHHh
Q 021783          160 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVE  238 (307)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  238 (307)
                      .+++...+++.+..|++++.+|+..+.++|+.++.+..+.+|+++++|+++++.++.++.|++++|.++ +.+.+.+|++
T Consensus       245 ~a~l~~~gl~tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~  324 (405)
T PRK08776        245 DAFLTLRGLRTLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEGGEAAVRAFVD  324 (405)
T ss_pred             HHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998888888999999994 5666789999


Q ss_pred             cCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       239 ~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      .|+...+.+++|+..++.++|...+|..++.+.+...|..++.||+|+|+||.|.+++.|.++|+++
T Consensus       325 ~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liR~svGlE~~~dli~dl~~al~~~  391 (405)
T PRK08776        325 GLRYFTLAESLGGVESLIAHPASMTHAAMTAEARAAAGISDGLLRLSVGIESAEDLLIDLRAGLARA  391 (405)
T ss_pred             hCCcceEccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999998899999999999999999999999999999764

>PRK09028 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=8.2e-46  Score=320.29  Aligned_cols=299  Identities=29%  Similarity=0.502  Sum_probs=265.0

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .+++++++|||+|+++++.|+++...+....+.+|+++..++..+.+++++.++++|++|++++|+||+|.+.|+
T Consensus        86 ~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~~TklV~lespsNPtg~v~dl  165 (394)
T PRK09028         86 AAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLESPGSITMEVQDV  165 (394)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCcHHHH
Confidence            4566 456678999999999999998888666556678999999998878889999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  159 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (307)
                      ++|+++||++|+++++|++|+.+....+.++|+|+++.|.+||++|++++++|+++.+ +...+.+.......|..+++.
T Consensus       166 ~~I~~la~~~g~~lvvD~t~a~p~~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~-~~~~~~l~~~~~~~G~~~~p~  244 (394)
T PRK09028        166 PTLSRIAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGTATAN-EKHWDQLREHSYLMGQCTSPD  244 (394)
T ss_pred             HHHHHHHHHcCCEEEEECCccccccCCccccCceEEEEeCCeEecCCCCEEEEEEECC-HHHHHHHHHHHHhcCCCCCHH
Confidence            9999999999999999999999887788899999999999999999999999987655 444454555566678899999


Q ss_pred             hHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC--CHHHHHHHH
Q 021783          160 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--SLALSKHVV  237 (307)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  237 (307)
                      .+|+..++++++..|++++.+++..+.++|+.++.+.+++||+++++|+++++.++.++.+++++|.++  +.+.+.+|+
T Consensus       245 ~a~l~~rgl~TL~lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~f~  324 (394)
T PRK09028        245 DVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAVTALV  324 (394)
T ss_pred             HHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999888788999999996  466789999


Q ss_pred             hcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 021783          238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  304 (307)
Q Consensus       238 ~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  304 (307)
                      +.|+...+.+++|+..++..+|...++...    ....+..++.||+|+|+||.+.+++.|.++|++
T Consensus       325 ~~l~l~~~~~slG~~~sLv~~p~~~~~~~~----~~~~~~~~~liR~svGlEd~~dLi~Dl~~Al~~  387 (394)
T PRK09028        325 EGMQHFKMGFSWGGFESLILGVFGINKLRT----ATNWDFSKPLIRLHIGLEDVDDLIADLEAGFER  387 (394)
T ss_pred             HhCCcceEecccCCCcceeECCCCcCccCc----hhhhcCCCCeEEEEeCcCCHHHHHHHHHHHHHH
Confidence            999999999999999999988866554432    233666678999999999999999999999975

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=100.00  E-value=1e-45  Score=323.12  Aligned_cols=304  Identities=35%  Similarity=0.604  Sum_probs=274.8

Q ss_pred             cHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            2 AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         2 aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      +|+ .++.++++|||+|+++++.|+++...+...++..|++++.++..|+++++++++++|++|++++|+||+|.+.|++
T Consensus        91 ~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~ai~~~tklV~lesp~NptG~v~dl~  170 (398)
T PRK07504         91 AAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPNTKVFFLESPTNPTLEVIDIA  170 (398)
T ss_pred             HHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCcEecCHH
Confidence            455 4455678999999999999998877766667789999999998899999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhh
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  160 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (307)
                      +|.++|+++|+++|+|++|+.+....+...|+|+++.|++|+++|++...+|+++.+++.+.+.+.......+..+++..
T Consensus       171 ~I~~la~~~gi~lvvD~a~a~~~~~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~  250 (398)
T PRK07504        171 AVAKIANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFN  250 (398)
T ss_pred             HHHHHHHHcCCEEEEECCccccccCCchhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHH
Confidence            99999999999999999999887766777899999999999997765455788888877666556555666778899999


Q ss_pred             HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC-CHHHHHHHHhc
Q 021783          161 CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVET  239 (307)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  239 (307)
                      +++...+++.+..|++++.++++.+.++|+.++.+.+++||++.++|+++++.++.++.+++++|.++ +.+.+..|++.
T Consensus       251 A~~~l~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~~~~~  330 (398)
T PRK07504        251 AWTLLKGLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAFRFLNA  330 (398)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999998888788999999994 56778899999


Q ss_pred             CCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          240 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       240 l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      |+...+.+++|+..++.++|...+|..++.+.+...|.+++.||+|+|+||.+.+++.|.++|+++
T Consensus       331 l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~  396 (398)
T PRK07504        331 LKIVRISNNLGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLSAGLEDTDDLIEDLAAALKKV  396 (398)
T ss_pred             CCcceecccCCCCCeeeeCCCCCCcccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999865

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.4e-45  Score=323.77  Aligned_cols=305  Identities=40%  Similarity=0.658  Sum_probs=270.2

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .++.+++++||+|+++++.|++....+...++..|+++++++..|++++++++++++++|++++|+||||.+.|+
T Consensus        89 ~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di  168 (431)
T PRK08248         89 QAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAITDKTKALFAETIGNPKGDVLDI  168 (431)
T ss_pred             HHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCH
Confidence            3566 466678899999999999999888777777889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhH------------------
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL------------------  141 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~------------------  141 (307)
                      ++|.++|+++|+++|+|++++.+....+.++|+|+++.|++|+++|+....+|+++.+.+..                  
T Consensus       169 ~~I~~la~~~gi~vIvD~t~a~~~~~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~  248 (431)
T PRK08248        169 EAVAAIAHEHGIPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYH  248 (431)
T ss_pred             HHHHHHHHHcCCEEEEeCCCCccccCChhHcCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccc
Confidence            99999999999999999999987766666789999999999999776556667666543210                  


Q ss_pred             --------------HHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCC
Q 021783          142 --------------AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP  207 (307)
Q Consensus       142 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~  207 (307)
                                    ...........|..+++..+|+..++++++..|++++.+++..+.++|+.++.+..++||++.++|
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tl~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p  328 (431)
T PRK08248        249 GLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMERHSENALAVAKFLEEHEAVEWVSYPGLPSHP  328 (431)
T ss_pred             cchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCc
Confidence                          111223445567889999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHhhhc-cCCCceEEEEe-CCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEE
Q 021783          208 GHELHYSQA-KGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS  285 (307)
Q Consensus       208 ~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis  285 (307)
                      ++.+..++. ++.|++++|.+ ++.+.+..|++.|+...+.+++|+..++.++|...+|..++.+.+...|..++.||+|
T Consensus       329 ~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRls  408 (431)
T PRK08248        329 SYELAKKYLPKGQGAILTFGIKGGVEAGKKLIDSVKLFSHLANVGDSKSLIIHPASTTHQQLSEEEQLAAGVTPGLVRLS  408 (431)
T ss_pred             cHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCCcceeccccCCCCeeeeCCCcCccccCCHHHHHhcCCCCCeEEEE
Confidence            999998765 56789999999 4567788999999999999999999999999999999999999999999999999999


Q ss_pred             eccCChHHHHHHHHHHHhcC
Q 021783          286 VGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       286 ~~~~~~~~~i~~l~~~l~~~  305 (307)
                      +|+||.+.+++.|.++|+++
T Consensus       409 vGlEd~~dL~~Dl~~Al~~~  428 (431)
T PRK08248        409 VGTEAIDDILDDLRQAIRQS  428 (431)
T ss_pred             eccCCHHHHHHHHHHHHHhh
Confidence            99999999999999999865

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=1.8e-45  Score=321.01  Aligned_cols=304  Identities=38%  Similarity=0.680  Sum_probs=273.6

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .++.+++++||+|+++.++|+++...+...++..|+++++++..|+++++++++++|++|++++|+||+|.+.|+
T Consensus        89 ~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl  168 (398)
T PRK08249         89 MAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCETGDHEQIEAEIAKGCDLLYLETPTNPTLKIVDI  168 (398)
T ss_pred             HHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCCCCHHHHHHhcCCCCeEEEEECCCCCCCccCCH
Confidence            3566 455568899999999999999887777777788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  159 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (307)
                      ++|.++|+++|+++|+|++|+.+....+...++|+++.|++|+++|+....+|+++.+ +.+.+.+.......+..+++.
T Consensus       169 ~~I~~la~~~gi~livD~t~a~~~~~~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~-~~l~~~l~~~~~~~g~~~s~~  247 (398)
T PRK08249        169 ERLAAAAKKVGALVVVDNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGS-KELMEQVYHYREINGATMDPM  247 (398)
T ss_pred             HHHHHHHHHcCCEEEEECCcCccccCCchhhCCCEEeccCceecCCCCCceEEEEECC-HHHHHHHHHHHHhcCCCCCHH
Confidence            9999999999999999999997765555567899999999999977665567888775 446666666666778889999


Q ss_pred             hHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC-CHHHHHHHHh
Q 021783          160 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVE  238 (307)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  238 (307)
                      .++++.++++.+..|++++.++++.+.++|+.++.+.+++||++.++|+++++.++..+.|++++|.++ +.+.+.+|++
T Consensus       248 ~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~~~~~~~f~~  327 (398)
T PRK08249        248 SAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGMDTVKRLLP  327 (398)
T ss_pred             HHHHHHhCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998887788999999994 5566889999


Q ss_pred             cCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       239 ~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      .|+...+.+++|+..++.++|...+|..++.+.+...|..++.||+|+|+||.+.+++.|.++|+.+
T Consensus       328 ~l~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~  394 (398)
T PRK08249        328 KLRYAHRAANLGAVETIYGPARTTSHVENTLEERAALGIPEGLVRISVGIEDTEDLIADLEQAFAHL  394 (398)
T ss_pred             hCCcceEccCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999754

>PRK08114 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=2.4e-45  Score=316.37  Aligned_cols=300  Identities=27%  Similarity=0.456  Sum_probs=265.2

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ +++++++++||+|++++..|.+....+...++..|+++.+++..|.++++++++++|++|++++|+||+|.+.|+
T Consensus        87 maAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI  166 (395)
T PRK08114         87 AAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPNTKVVFLESPGSITMEVHDV  166 (395)
T ss_pred             HHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCEeecH
Confidence            5788 466778999999999999999998887777888999999999989999999999999999999999999999999


Q ss_pred             HHHHHHHHHcC--CEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCC
Q 021783           80 RKIAEMAHAHG--ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  157 (307)
Q Consensus        80 ~~l~~~~~~~~--~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  157 (307)
                      ++|+++||++|  +++++|++++.|...++.++|+|+++.|.+||++|++.+.+|+++.+++ ..+.+.......|..++
T Consensus       167 ~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~-~~~~l~~~~~~~G~~~~  245 (395)
T PRK08114        167 PAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANAR-CWEQLRENSYLMGQMVD  245 (395)
T ss_pred             HHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHH-HHHHHHHHHHhccCCCC
Confidence            99999999984  9999999999998889999999999999999999999888998877654 44445556667788999


Q ss_pred             hhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC---HHHHH
Q 021783          158 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS---LALSK  234 (307)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  234 (307)
                      +..+|+..++++++..|++++.+++..+.++|+.++.+.+++||+++++|+++++.++.++.|++++|.+++   .+.+.
T Consensus       246 p~~a~l~~rgl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~  325 (395)
T PRK08114        246 ADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLA  325 (395)
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998887889999999964   56789


Q ss_pred             HHHhcCCcceeecCCCCccceeecccc--cCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          235 HVVETTKYFSITVSFGSVKSLISMPCF--MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       235 ~~~~~l~~~gi~v~~g~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      ++++.++...+.+++|+..++.++|..  ..+.. +.+   ..+...+.||+|+|+||.+.+++.|.++|+++
T Consensus       326 ~f~~~l~l~~~a~SlGg~~SLi~~~~~~~~~~~~-~~~---~~~~~~~liRlSvGlEd~~DLi~Dl~~Al~~~  394 (395)
T PRK08114        326 NYLDNFSLFSMAYSWGGFESLILANQPEEIAAIR-PAG---EVDFTGTLIRLHIGLEDVDDLIADLAAGFARI  394 (395)
T ss_pred             HHHHhCCcceeecccCCccceeccCCchhhhccC-Chh---HhcCCCCeEEEEeccCCHHHHHHHHHHHHHhh
Confidence            999999999999999999998874422  22222 211   24455689999999999999999999999764

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=1.1e-44  Score=314.93  Aligned_cols=303  Identities=41%  Similarity=0.616  Sum_probs=271.2

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCC-CceEEEEeCCCCCcccccc
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~   78 (307)
                      |+|+ .++.+++++||+|+++.+.|+++...+..+ +..|++++.++. |++++++++++ ++++|++++|+||+|.+.|
T Consensus        78 ~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~-~~~g~~v~~~~~-d~~~l~~~i~~~~tklV~ie~p~NPtG~v~d  155 (385)
T PRK08574         78 MAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSL-EKFGVKVVLAYP-STEDIIEAIKEGRTKLVFIETMTNPTLKVID  155 (385)
T ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHh-hccCcEEEEECC-CHHHHHHhcCccCceEEEEECCCCCCCEecC
Confidence            3556 455678999999999999999888666553 778999988765 68999999987 9999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCCh
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP  158 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (307)
                      +++|.++|+++|+++|+|++|+.|....+...|+|++++|++|+++|+.++.+|+++++++.+.+.+.......+..+++
T Consensus       156 l~~I~~la~~~gi~livD~t~a~~~~~~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p  235 (385)
T PRK08574        156 VPEVAKAAKELGAILVVDNTFATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQP  235 (385)
T ss_pred             HHHHHHHHHHcCCEEEEECCCCccccCChhhhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCH
Confidence            99999999999999999999998876666678999999999999988877778977777677777776666667778889


Q ss_pred             hhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhcc--CCCceEEEEeC-CHHHHHH
Q 021783          159 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK--GAGSVLSFLTG-SLALSKH  235 (307)
Q Consensus       159 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~  235 (307)
                      ..++++..+++.+..|+++..++++.+.++|+.++.+.+++||++.++|++.++.++..  +.|++++|.++ +.+.+..
T Consensus       236 ~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~~  315 (385)
T PRK08574        236 FEAYLVLRGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKGGRDAVLK  315 (385)
T ss_pred             HHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988653  57899999994 6777899


Q ss_pred             HHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          236 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       236 ~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      |++.|+...+.+++|+..++.++|...+|..++.+.+...|..++.||+|+|+||.+.+++.|.++|+++
T Consensus       316 ~~~~l~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dli~dl~~al~~~  385 (385)
T PRK08574        316 FLRSLKLIKPSPSLGGVESLATYPVKSAASPIPEEDRKALGITEDLVRLSVGLEDVEDLIEDLDQALGSI  385 (385)
T ss_pred             HHHcCCcceEccCCCCCcceeeCCCcCCcccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999763

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=1.2e-44  Score=315.69  Aligned_cols=301  Identities=47%  Similarity=0.762  Sum_probs=270.8

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .++.+++++||+|+++++.|++....+...++..|++++.++..|++++++.++++|++|++++|+||+|...|+
T Consensus        86 ~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl  165 (388)
T PRK07811         86 MAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVETPTNPLLSITDI  165 (388)
T ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEECCCCCcceecCH
Confidence            3566 455678899999999999998887776677778899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  159 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (307)
                      ++|.++|+++|+++|+|++|+.+....+...++|++++|++|+++|+.++++|+++++++.+.+.+.......+...++.
T Consensus       166 ~~I~~la~~~gi~lIvD~a~a~~~~~~p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~  245 (388)
T PRK07811        166 AALAELAHDAGAKVVVDNTFASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPF  245 (388)
T ss_pred             HHHHHHHHHcCCEEEEECCCCccccCCchhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHH
Confidence            99999999999999999999988766666678999999999999888888899999987777777766666667777888


Q ss_pred             hHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC-CHHHHHHHHh
Q 021783          160 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVE  238 (307)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  238 (307)
                      .+++...+++.+..|+++..++++.+.++|+.++.+..+.+|++.++|+++++.++..+.|++++|.++ +.+.+.+|++
T Consensus       246 ~a~l~~~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~  325 (388)
T PRK07811        246 DAYLTLRGLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGEEAARDFCA  325 (388)
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCCHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999888888999999995 5677899999


Q ss_pred             cCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 021783          239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  304 (307)
Q Consensus       239 ~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  304 (307)
                      .|+...+.+++|+..++.++|...+|..++.+   ..|..++.||+|+|+||.+.+++.|.++|++
T Consensus       326 ~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~---~~gi~~~liR~svGlE~~~dl~~dl~~al~~  388 (388)
T PRK07811        326 RTKVFTLAESLGGVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVGIEDVADLLADLEQALGQ  388 (388)
T ss_pred             hCCcceeeccCCCCcceEeCCcccCcccCCHh---hcCCCCCEEEEEeCCCCHHHHHHHHHHHhhC
Confidence            99999999999999999999988888887744   4588999999999999999999999999863

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=100.00  E-value=9.4e-45  Score=316.93  Aligned_cols=302  Identities=38%  Similarity=0.615  Sum_probs=274.4

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .++.+++++||+|+++...|++.+..+...++..|+++++++..|+++++++++++|++|++++|+||+|.+.|+
T Consensus        95 ~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl  174 (403)
T PRK07810         95 MSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQAVFFETPSNPMQSLVDI  174 (403)
T ss_pred             HHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCeecCH
Confidence            4566 455678899999999998998887777777888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  159 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (307)
                      ++|.++|+++|+++|+|++|+.+....+...|+|+++.|++|+++|+....+|+++++++.+.+.+.......+..+++.
T Consensus       175 ~~I~~la~~~g~~vivD~a~a~~~~~~~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~  254 (403)
T PRK07810        175 AAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAF  254 (403)
T ss_pred             HHHHHHHHHcCCEEEEECCCCccccCChhhcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHH
Confidence            99999999999999999999988877667789999999999999876666789999987766655665556677789999


Q ss_pred             hHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC-----HHHHH
Q 021783          160 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-----LALSK  234 (307)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  234 (307)
                      .+++...+++.+..|++++.+++..+.++|+.++.+.+++||+++++|++.++.++.++.|++++|.+++     .+.+.
T Consensus       255 ~a~l~l~~L~tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~  334 (403)
T PRK07810        255 NAWVLLKGLETLALRVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRAF  334 (403)
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCCCcCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999888889999999963     56688


Q ss_pred             HHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHH
Q 021783          235 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  302 (307)
Q Consensus       235 ~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l  302 (307)
                      +|++.|+...+.+++|...++..+|...+|..++.+.+...|..++.+|+|+|+|+.+.+++.|.++|
T Consensus       335 ~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~lvR~svGlE~~~dli~dl~~Al  402 (403)
T PRK07810        335 EVLDKLRVIDISNNLGDAKSLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVGLEDTDDLIADLDRAL  402 (403)
T ss_pred             HHHHhCCceEEeccCCCCcceeeCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999989999999999999999999999999999986

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=100.00  E-value=9.4e-45  Score=316.47  Aligned_cols=303  Identities=40%  Similarity=0.719  Sum_probs=270.2

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .++.+++++||+|+++++.|+++...+...++..|+++++++.+|+++++++++++|++|++++|+||+|.+.|+
T Consensus        86 ~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~ie~p~NptG~v~dl  165 (390)
T PRK08133         86 MAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAVRPNTKLFFLETPSNPLTELADI  165 (390)
T ss_pred             HHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCCcCCH
Confidence            3455 456678899999999999999888777667788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  159 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (307)
                      ++|.++|+++|+++|+|++++.+....+...|+|+++.|+||+++++....+|+++.+++.+ +.+.......+..+++.
T Consensus       166 ~~I~~la~~~gi~livD~t~~~~~~~~pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~-~~~~~~~~~~g~~~~~~  244 (390)
T PRK08133        166 AALAEIAHAAGALLVVDNCFCTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELM-EEVFGFLRTAGPTLSPF  244 (390)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEeecceeecCCcceEeEEEEcCHHHH-HHHHHHHHHhCCCCCHH
Confidence            99999999999999999999888766666778999999999999665444568888776544 44444555567778888


Q ss_pred             hHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC-CHHHHHHHHh
Q 021783          160 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVE  238 (307)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  238 (307)
                      .+++...+++.+..|++++.+++..+.++|++++.+.++++|++.++|+++++.++..+.|++++|.++ +.+.+.+|++
T Consensus       245 ~a~~~l~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~  324 (390)
T PRK08133        245 NAWVFLKGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGREAAWRVID  324 (390)
T ss_pred             HHHHHHcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998888788999999995 5677889999


Q ss_pred             cCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 021783          239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  304 (307)
Q Consensus       239 ~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  304 (307)
                      .++...+.+++|+..++.++|...+|..++.+.+...|..++.||+|+|+||.|.+++.|.++|+.
T Consensus       325 ~l~l~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~  390 (390)
T PRK08133        325 ATRLISITANLGDTKTTITHPATTTHGRLSPEARAAAGITEGLIRVAVGLEDVADIKADLARGLAA  390 (390)
T ss_pred             hCCcceEeccCCCcceeeecCCCCCcccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999999999999999999999863

>PRK05939 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-44  Score=314.25  Aligned_cols=303  Identities=33%  Similarity=0.505  Sum_probs=265.8

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .++.++++|||+|+++++.|+++...+.. ++..|++++.++..|+++++++++++|++|++++|+||+|.+.|+
T Consensus        72 ~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~-l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~vesp~NptG~v~dl  150 (397)
T PRK05939         72 MAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGT-LRGLGVEVTMVDATDVQNVAAAIRPNTRMVFVETIANPGTQVADL  150 (397)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCccccHHHHHHH-HHhcCCEEEEECCCCHHHHHHhCCCCCeEEEEECCCCCCCCHHhH
Confidence            4667 45566899999999999999887766644 567899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcCh--------h-----------
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE--------R-----------  140 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~--------~-----------  140 (307)
                      ++|.++|+++|+++++|++|+.+...++...|+|+++.|+||+++|+.+..+|++..+..        .           
T Consensus       151 ~~I~~la~~~gi~livD~t~a~~~~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~  230 (397)
T PRK05939        151 AGIGALCRERGLLYVVDNTMTSPWLFRPKDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQ  230 (397)
T ss_pred             HHHHHHHHHcCCEEEEECCcccccccCccccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhh
Confidence            999999999999999999999887667777899999999999998876666666553221        0           


Q ss_pred             --HHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          141 --LAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       141 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                        +.+.........|..+++..+|+..++++++..|++++.+|+..+.++|+.++.+.++.+|++.++|+++++.++.++
T Consensus       231 ~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g  310 (397)
T PRK05939        231 WGLTQIRKKGLRDMGATLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRH  310 (397)
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhccC
Confidence              011111223356788999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             CCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHH
Q 021783          219 AGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL  298 (307)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l  298 (307)
                      .|++++|.+++.+.+..+++.++.....+++|+..++.++|...+|..++.+.+...|..++.||+|+|+||.+.+++.|
T Consensus       311 ~g~l~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~lvR~svGlEd~~dLi~dl  390 (397)
T PRK05939        311 YGGLLSFELADGIDCFDFLNRLKLVIKATHLGDTRTLVIPVAPTIYYEMGAERRASMGIADSLIRVSVGIEDEADLIADF  390 (397)
T ss_pred             CceEEEEEeCCHHHHHHHHHhCCcceEccCCCCCCeeeecCcccccccCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHH
Confidence            89999999976666889999999988999999999999999999999999888888999999999999999999999999


Q ss_pred             HHHHhc
Q 021783          299 DKALRT  304 (307)
Q Consensus       299 ~~~l~~  304 (307)
                      .++|++
T Consensus       391 ~~Al~~  396 (397)
T PRK05939        391 EQALDA  396 (397)
T ss_pred             HHHHhc
Confidence            999975

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=100.00  E-value=1.6e-44  Score=314.77  Aligned_cols=303  Identities=39%  Similarity=0.716  Sum_probs=269.9

Q ss_pred             cHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            2 AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         2 aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      +|+ .++.+++++||+|+++++.|+.....+...+...|+++++++.+|+++++++++++|++|++++|+||+|.+.|++
T Consensus        85 ~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~l~~~i~~~tklV~le~p~Np~G~v~dl~  164 (391)
T TIGR01328        85 GAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEEVKAHIKDNTKIVYFETPANPTMKLIDME  164 (391)
T ss_pred             HHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhhccCCeEEEEECCCCCCCcccCHH
Confidence            455 4555678999999999999988887777778889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH--HHhcCCCCCh
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNAEGSGLAP  158 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~  158 (307)
                      +|.++|+++|+++|+|++|+.+....+...++|+++.|++|+++++++.++|+++.+++ +.+.+...  ....+..+++
T Consensus       165 ~I~~la~~~gi~livD~a~a~~~~~~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~-li~~l~~~~~~~~~g~~l~~  243 (391)
T TIGR01328       165 RVCRDAHSQGVKVIVDNTFATPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKAE-LLQQIRMVGIKDMTGSVISP  243 (391)
T ss_pred             HHHHHHHHcCCEEEEECCCchhccCCchhcCCCEEEccccccccCCCCceEEEEEcCHH-HHHHHHHHHHHhCCCCCCCc
Confidence            99999999999999999999887666667799999999999997766666888887654 44444432  2234567888


Q ss_pred             hhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC-CHHHHHHHH
Q 021783          159 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVV  237 (307)
Q Consensus       159 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  237 (307)
                      ..+++...+++.+..|+++..++++.+.++|+.++.+..+++|++.++|+++++.++.++.|++++|.++ +.+.+.+|+
T Consensus       244 ~~a~l~l~~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~f~  323 (391)
T TIGR01328       244 FDAWLILRGLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGFAGAKKLL  323 (391)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCCHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999998888778999999995 567789999


Q ss_pred             hcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       238 ~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      +.|+...+.+++|+..++.++|...+|..++.+.+...|..++.||+|+|+||.+.+++.|.++|+++
T Consensus       324 ~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~  391 (391)
T TIGR01328       324 NNLKLIRLAVSLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGLEDADDLIADLKQALDAL  391 (391)
T ss_pred             HhCCcceEecCCCCCcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999864

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.3e-44  Score=315.25  Aligned_cols=305  Identities=32%  Similarity=0.542  Sum_probs=273.6

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-ChHHHHhhcCCCceEEEEeCCCCCcccccc
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-DLDEVASAIGPWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~   78 (307)
                      |+|+ .++++++++||+|+++.+.|.++...+...+...|+++++++.. |+++++++++++||+|++++|+||++.+.|
T Consensus        86 ~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~D  165 (432)
T PRK06702         86 QAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALANDKTKLVYAESLGNPAMNVLN  165 (432)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCcCCeEEEEEcCCCccccccC
Confidence            5677 46667899999999999999988877666678899999999984 899999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcCh---------h---------
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE---------R---------  140 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~---------~---------  140 (307)
                      +++|.++|+++|+++++|++++.+....+.+.|+|+++.|.+||++|+.+..+|+++....         .         
T Consensus       166 i~~I~~iA~~~gi~livD~T~~tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~  245 (432)
T PRK06702        166 FKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYH  245 (432)
T ss_pred             HHHHHHHHHHcCCEEEEECCCCchhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCccccccccccccccccccc
Confidence            9999999999999999999999888888899999999999999999999999998874321         0         


Q ss_pred             -------------HHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCC
Q 021783          141 -------------LAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP  207 (307)
Q Consensus       141 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~  207 (307)
                                   +.+.........+..++++.+|+...+++++..|++++.+|+..+.++|+.++.+.++.+|+++++|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p  325 (432)
T PRK06702        246 GVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNE  325 (432)
T ss_pred             ccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCc
Confidence                         1111223344556789999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHhhhc-cCCCceEEEEeC-CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEE
Q 021783          208 GHELHYSQA-KGAGSVLSFLTG-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS  285 (307)
Q Consensus       208 ~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis  285 (307)
                      ++.++.++. ++.+++++|.+. +.+.+.+|++.|+...+.+++|+..++..+|...+|..++.+.+...|..++.||+|
T Consensus       326 ~~~l~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlS  405 (432)
T PRK06702        326 NYSLAQKYLKKGASGVLTFGIKGGLEAAKEFIANVKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLS  405 (432)
T ss_pred             cHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEE
Confidence            999998876 667899999994 667788999999999999999999999999999999999999999999999999999


Q ss_pred             eccCChHHHHHHHHHHHhcC
Q 021783          286 VGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       286 ~~~~~~~~~i~~l~~~l~~~  305 (307)
                      +|+||.|.+++.|.++|+.-
T Consensus       406 vGlEd~eDLi~Dl~~Al~~~  425 (432)
T PRK06702        406 VGIEDVSDIIADLEAALVGG  425 (432)
T ss_pred             eccCCHHHHHHHHHHHHhcC
Confidence            99999999999999999753

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.7e-44  Score=316.37  Aligned_cols=305  Identities=40%  Similarity=0.626  Sum_probs=270.8

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEec-CCChHHHHhhcCCCceEEEEeCCCCCcccccc
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIGPWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~-~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~   78 (307)
                      |+|+ +++.+++++||+|+++...|.++...+...+...|++++.++ ..|+++++++++++|++|++++++||+|.+.|
T Consensus        94 ~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai~~~tklV~ie~~sNp~G~v~D  173 (436)
T PRK07812         94 QAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVRPNTKAFFAETISNPQIDVLD  173 (436)
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhCCCCCeEEEEECCCCCCCeecC
Confidence            4677 567778999999999999998888766666778999999996 56899999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChh------------------
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER------------------  140 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~------------------  140 (307)
                      +++|.++|+++|+++|+|++++.+....+..+|+|+++.|++|+++|+++..+|+++.+...                  
T Consensus       174 l~~I~~la~~~gi~liVD~t~a~~~~~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~  253 (436)
T PRK07812        174 IPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYH  253 (436)
T ss_pred             HHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccc
Confidence            99999999999999999999998887777788999999999999988877778877753210                  


Q ss_pred             ------------HHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCc
Q 021783          141 ------------LAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG  208 (307)
Q Consensus       141 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~  208 (307)
                                  +.+.........|..+++..+|+..++++.+..|++++.+++.++.++|+.++.+..+++|++.++|+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~  333 (436)
T PRK07812        254 GVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLEARDEVASVNYAGLPSSPW  333 (436)
T ss_pred             cchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCcc
Confidence                        01112234456788999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhhc-cCCCceEEEEeC-CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEe
Q 021783          209 HELHYSQA-KGAGSVLSFLTG-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  286 (307)
Q Consensus       209 ~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~  286 (307)
                      +.++.++. ++.|++++|.+. +.+.+..|++.|+...+.+++|...++.++|...+|..++.+.+...|..++.||+|+
T Consensus       334 ~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~gi~~~liRlSv  413 (436)
T PRK07812        334 YERAKRLAPKGTGAVLSFELAGGVEAGKAFVNALTLHSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRLAV  413 (436)
T ss_pred             HHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCCcceEecccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCeEEEEe
Confidence            99998865 678899999994 5667899999999999999999999999999999999999999999999999999999


Q ss_pred             ccCChHHHHHHHHHHHhcC
Q 021783          287 GIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       287 ~~~~~~~~i~~l~~~l~~~  305 (307)
                      |+||.+.+++.|.++|+++
T Consensus       414 GlEd~~dli~dl~~Al~~~  432 (436)
T PRK07812        414 GIEGIDDILADLEAGFAAA  432 (436)
T ss_pred             ccCCHHHHHHHHHHHHHhh
Confidence            9999999999999999864

>PRK05967 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=1.5e-44  Score=311.72  Aligned_cols=298  Identities=30%  Similarity=0.489  Sum_probs=264.2

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .+++++++|||+|+++++.|+++...+...++.+|+++.+++..+.+.++++++++|++|++++|+||++...|+
T Consensus        89 ~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~~TklV~lesPsNP~l~v~dl  168 (395)
T PRK05967         89 LAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDI  168 (395)
T ss_pred             HHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCcHHHH
Confidence            5677 566678999999999999999988767677889999999998878888999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  159 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (307)
                      ++|+++|+++|+++++|++|+.+....+.++|+|+++.|.+|+++|.+++++|++..+++ ..+.+.......|..+++.
T Consensus       169 ~~I~~la~~~g~~vvVD~t~a~p~~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~-~~~~l~~~~~~~G~~~~p~  247 (395)
T PRK05967        169 PAIAEAAHRHGAIVMMDNTWATPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEK-CWPQLLEAHGTLGLCAGPD  247 (395)
T ss_pred             HHHHHHHHHhCCEEEEECCccCceecChhHcCCCEEEEecccccCCCCCeeEEEEEcCHH-HHHHHHHHHHHcCCCCCHH
Confidence            999999999999999999999988889999999999999999999999999998877654 4444555555678889999


Q ss_pred             hHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC-----CHHHHH
Q 021783          160 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-----SLALSK  234 (307)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  234 (307)
                      .+|+..++++++..|++++.+++..+.++|+.++.+.+++||+++++|+++++.++..+.+++++|.++     +.+.+.
T Consensus       248 da~l~~rgl~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~~  327 (395)
T PRK05967        248 DTYQILRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAKAH  327 (395)
T ss_pred             HHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHHHH
Confidence            999999999999999999999999999999999999999999999999999998887788999999996     357789


Q ss_pred             HHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          235 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       235 ~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      +|++.|+...+.+++|+..++.+++      .++...+...|..++.||||+|+||.+.+++.|.++|+++
T Consensus       328 ~f~~~l~l~~~~~slG~~~sLi~~~------~~~~~~~~~~~~~~~liRlSvGlEd~~dLi~Dl~~Al~~~  392 (395)
T PRK05967        328 AFLDALEIFGLGYSWGGYESLALHV------KLGDRTVAKAPYAGPVIRLQIGLEDVPDLKADLERGFAAA  392 (395)
T ss_pred             HHHHhCCcceEccCCCCcceeeeeC------CCChhHhhhccCCCCeEEEEeccCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999988763      2233223334666789999999999999999999999865

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=100.00  E-value=8.3e-45  Score=295.49  Aligned_cols=304  Identities=41%  Similarity=0.669  Sum_probs=277.3

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |||+ .+++.+.++||+|+.++.-|+++.+.+...++.+|+++++++.+|++.++++++++||+|++++..||.+.+.|+
T Consensus        87 ~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI~~nTkavf~EtigNP~~~v~Di  166 (426)
T COG2873          87 QAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDVLDI  166 (426)
T ss_pred             hHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCCCHHHHHHHhCcccceEEEEeccCCCccccCH
Confidence            6777 677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHH----------------
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK----------------  143 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~----------------  143 (307)
                      ++|+++||++|+++|+|.+.+.+++..+.+.|+|+++.|.+||++|....++|+++-....-..                
T Consensus       167 e~ia~iAh~~gvpliVDNT~atpyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~Yh  246 (426)
T COG2873         167 EAIAEIAHRHGVPLIVDNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYH  246 (426)
T ss_pred             HHHHHHHHHcCCcEEEecCCCcceecchhhcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCcccc
Confidence            9999999999999999999999988899999999999999999999888888888765331110                


Q ss_pred             ----------------HHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCC
Q 021783          144 ----------------ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP  207 (307)
Q Consensus       144 ----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~  207 (307)
                                      .-....+..|..++++.+|+.+.+++.+..|++++.+|+.++.++|+.+|++.++.|++|+++|
T Consensus       247 Gl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~  326 (426)
T COG2873         247 GLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHP  326 (426)
T ss_pred             ceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCc
Confidence                            0112345678899999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHhhh-ccCCCceEEEEeCC-HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEE
Q 021783          208 GHELHYSQ-AKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS  285 (307)
Q Consensus       208 ~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis  285 (307)
                      .+.+..+. +++.++++.|.+++ .+...++++.|+..--....|...++..+|+.-+|..++.+.+.+.|..++.||+|
T Consensus       327 ~h~la~kyl~~g~g~vltF~~kgg~ea~~~fi~~l~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~~~IRlS  406 (426)
T COG2873         327 YHALAKKYLPKGAGAVLTFGVKGGYEAGKKFIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLS  406 (426)
T ss_pred             chhHHHhhccCCCceEEEEEecChHHHHHHHHHHHHHHHhhccccccceeEecCcccchhcCCHHHHHhcCCCCCcEEEE
Confidence            99998765 68889999999954 47789999999988888899999999999999999999999999999999999999


Q ss_pred             eccCChHHHHHHHHHHHhc
Q 021783          286 VGIEDVNDLISDLDKALRT  304 (307)
Q Consensus       286 ~~~~~~~~~i~~l~~~l~~  304 (307)
                      +|.||++.++..|+++|++
T Consensus       407 VGIEd~~DiiaDl~qAl~~  425 (426)
T COG2873         407 VGIEDIDDIIADLEQALEA  425 (426)
T ss_pred             eccCCHHHHHHHHHHHHhc
Confidence            9999999999999999975

>PRK06234 methionine gamma-lyase; Provisional

Probab=100.00  E-value=2.2e-44  Score=315.16  Aligned_cols=304  Identities=40%  Similarity=0.666  Sum_probs=271.3

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .++.+++++||+|+++++.|+.+...+...++..|+++++++..|++++++.++++|++|++++|+||||.+.|+
T Consensus        89 ~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~~i~~~tklI~iesP~NPtG~v~dl  168 (400)
T PRK06234         89 MGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNALKANTKVVYLETPANPTLKVTDI  168 (400)
T ss_pred             HHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCCCHHHHHHHhccCCeEEEEECCCCCCCCcCCH
Confidence            3456 455678899999999999998888777677788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHc--CCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH--HHHhcCCC
Q 021783           80 RKIAEMAHAH--GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEGSG  155 (307)
Q Consensus        80 ~~l~~~~~~~--~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~--~~~~~~~~  155 (307)
                      ++|.++|+++  |+++++|++|+.+....+...++|++++|++|+++|+...++|+++++++ +.+.+..  .....+..
T Consensus       169 ~~I~~la~~~~~~i~livDea~~~~~~~~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~-~~~~l~~~~~~~~~g~~  247 (400)
T PRK06234        169 KAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEE-FINQVKLFGIKDMTGSV  247 (400)
T ss_pred             HHHHHHHHhcCCCCEEEEECCCCchhcCCchhhCCcEEEeeccccccCCCCceeEEEEecHH-HHHHHHHHHHHHhcCCC
Confidence            9999999997  99999999999887666667789999999999997765566799998865 4444433  23345678


Q ss_pred             CChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC-CHHHHH
Q 021783          156 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSK  234 (307)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  234 (307)
                      +++..+++...+++.+..|++++.++++.+.++|+.++.+.++++|++.++|++.++.++.++.+++++|.++ +.+.+.
T Consensus       248 l~p~~a~l~~~~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~~~~~  327 (400)
T PRK06234        248 IGPFEAFLIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEEGK  327 (400)
T ss_pred             CCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcHHHHH
Confidence            8899999999999999999999999999999999999999999999999999999988877778999999995 556789


Q ss_pred             HHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          235 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       235 ~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      .|++.|+..++.+++|+..++..+|...+|..++.+.+...|..++.+|+|+|+||.+.+++.|.++|+++
T Consensus       328 ~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE~~~dl~~dl~~al~~~  398 (400)
T PRK06234        328 VVMNNVKLATLAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGLEDVDDIIADLKQALDLI  398 (400)
T ss_pred             HHHHhCCcceEeccCCCCCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999753

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=100.00  E-value=3.7e-44  Score=311.65  Aligned_cols=303  Identities=54%  Similarity=0.867  Sum_probs=275.0

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .++.+++++||+|+++.+.|.+....+...++..|++++.++.+|++++++.+++++++|++++|+||+|.+.|+
T Consensus        65 ~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl  144 (369)
T cd00614          65 MAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIKPETKLVYVESPTNPTLKVVDI  144 (369)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCeecCH
Confidence            3556 556678899999999999999988777777788999999999999999999998899999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  159 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (307)
                      ++|.++|+++|+++|+|++|+.+....+..+++|+++.|++|+++|++.+++|+++++++.+.+.+.......+..+++.
T Consensus       145 ~~i~~la~~~g~~livD~t~~~~~~~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~  224 (369)
T cd00614         145 EAIAELAHEHGALLVVDNTFATPYLQRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPF  224 (369)
T ss_pred             HHHHHHHHHcCCEEEEECCCcchhcCChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHH
Confidence            99999999999999999999988776667789999999999999877768899999987556666666666677788899


Q ss_pred             hHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC-CHHHHHHHHh
Q 021783          160 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVE  238 (307)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  238 (307)
                      .+++...+++.+..|++++.++++.+.++|+.++.+.++.+|++.++|+++++.++.++.+++++|.++ +.+.+.++++
T Consensus       225 ~a~~~l~~l~tl~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~f~~  304 (369)
T cd00614         225 DAWLLLRGLKTLPLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFLN  304 (369)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998877778999999996 6777899999


Q ss_pred             cCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 021783          239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  303 (307)
Q Consensus       239 ~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  303 (307)
                      .|+...+.+++|+..++.++|...+|..++.+.+...|.+++.+|+|+|+||.+.+++.|.++|+
T Consensus       305 ~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svGlE~~~dl~~dl~~al~  369 (369)
T cd00614         305 ALKLFSLAVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVGIEDVEDLIADLEQALK  369 (369)
T ss_pred             cCCcceEcccCCCCceeeeCCcccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHhhC
Confidence            99999999999999999999999999999988888899999999999999999999999999874

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-44  Score=302.82  Aligned_cols=304  Identities=46%  Similarity=0.698  Sum_probs=286.0

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .++..++++|+.|+..+..|..+...++.....+|++...+++++++++++++.+++++|++++|.||++.+.|+
T Consensus       102 maA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI  181 (409)
T KOG0053|consen  102 MAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVDDLKKILKAIKENTKAVFLESPSNPLLKVPDI  181 (409)
T ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechhhHHHHHHhhccCceEEEEECCCCCccccccH
Confidence            5666 566778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  159 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (307)
                      ++|.++||++|+++++|++.+.+...++..+|+|+++.|.+|+++|.+.+++|.++.+.....+.++..+...+..+++.
T Consensus       182 ~~l~~la~~~g~~vvVDnTf~~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~  261 (409)
T KOG0053|consen  182 EKLARLAHKYGFLVVVDNTFGSPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPF  261 (409)
T ss_pred             HHHHHHHhhCCCEEEEeCCcCcccccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHH
Confidence            99999999999999999999999888999999999999999999999999999999987888888999999999999999


Q ss_pred             hHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCc-eEEEEeCCHHHHHHHHh
Q 021783          160 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGSLALSKHVVE  238 (307)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  238 (307)
                      .+++..++++++..|++++.+++..+.++++.++.+.+++||+|+++|+++++.++.++..+ ++++.+.+.+.+.++++
T Consensus       262 ~~~ll~Rglktl~lRi~~~~ena~~~A~~Le~~~~v~kv~YPgL~Shp~h~~~~~~~~g~~G~l~~~~~~~~~~a~kf~~  341 (409)
T KOG0053|consen  262 DLFLLSRGLKTLHLRINKHSENALKIALLLEAHPKVKKVYYPGLPSHPNHELAKRQKKGGYGGLSSVIFGNEEHAKKFYD  341 (409)
T ss_pred             HHHHHhcCcchhhhhHHHHHHHHHHHHHHhhhCCceeEEEcCCCCCCccHHHHHhhhcCCcceEEEEEcCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999887766555 44455577888999999


Q ss_pred             cCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       239 ~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      .++..-..++.|+.+++.++|+.++|.. +.+.+...|..++-||+|+|+|+++.+++.|.++|+.+
T Consensus       342 ~LK~~~~a~SlG~~eSL~~~p~~mth~~-~~e~~~~~Gi~~~LVRvSVGiEd~~dL~~d~~~Al~~~  407 (409)
T KOG0053|consen  342 ALKLFTKAPSLGGNESLAEPPAIMTHAS-ELEEREKFGIDPNLVRVSVGIEDIEDLIKDFQQALEKA  407 (409)
T ss_pred             hhhhhhcccCcCccchhhcchhhhccCC-CHHHHHhcCCCCCcEEEEeccCCHHHHHHHHHHHHHhh
Confidence            9999889999999999999999999999 99999999999999999999999999999999999875

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=4.1e-44  Score=314.36  Aligned_cols=305  Identities=38%  Similarity=0.638  Sum_probs=269.2

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .++.+++++||+|+++.+.|++....+...+...|+++.+++..|++++++++++++++|++++|+||+|.+.|+
T Consensus        83 ~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le~ai~~~tklV~lesp~NPtG~v~dl  162 (425)
T PRK06084         83 MAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALIDERTKAVFCESIGNPAGNIIDI  162 (425)
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECCCCHHHHHHHhccCCcEEEEeCCCCCCCeecCH
Confidence            4566 455678899999999999998787776666677899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChh-HH----------------
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-LA----------------  142 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~-~~----------------  142 (307)
                      ++|.++|+++|+++|+|++|+.+....+..+|+|+++.|++|+++|+....+|+++.+... ..                
T Consensus       163 ~~I~~la~~~~i~vVvD~a~a~~~~~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~  242 (425)
T PRK06084        163 QALADAAHRHGVPLIVDNTVATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSY  242 (425)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCccc
Confidence            9999999999999999999998887777778999999999999998887778887764321 00                


Q ss_pred             ----------------HHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCC
Q 021783          143 ----------------KELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH  206 (307)
Q Consensus       143 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~  206 (307)
                                      +.........+..+++..+|+.+++++.+..|++++.+++..+.++|+.++.+..+++|++.++
T Consensus       243 ~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~lrgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~  322 (425)
T PRK06084        243 HGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLALRMERHTENALKVARYLQQHPQVAWVKYAGLPDH  322 (425)
T ss_pred             ccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCc
Confidence                            0011223456788999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHhhhccC-CCceEEEEeC-CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEE
Q 021783          207 PGHELHYSQAKG-AGSVLSFLTG-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI  284 (307)
Q Consensus       207 ~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRi  284 (307)
                      |++.++.++..+ .|++++|.++ +.+.+.+|++.|+...+.+++|+..++.++|...+|..++.+.+...|.+++.||+
T Consensus       323 p~~~~~~~~~~g~~gg~~s~~~~~~~~~~~~f~~~l~l~~~~~slG~~~slv~~p~~~~h~~~~~~~~~~~gi~~~liR~  402 (425)
T PRK06084        323 PEHELARRYMGGKPASILSFGIKGGQAAGARFIDALKLVVRLVNIGDAKSLACHPASTTHRQLNDEELEKAGVSRDMVRL  402 (425)
T ss_pred             ccHHHHHHhCCCCcceEEEEEecCCHHHHHHHHHhCCcceeccccCCCceeeeCCCcCCcccCCHHHHHhcCCCCCeEEE
Confidence            999999887766 6899999994 55668899999999999999999999999999999999999888899999999999


Q ss_pred             EeccCChHHHHHHHHHHHhcC
Q 021783          285 SVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       285 s~~~~~~~~~i~~l~~~l~~~  305 (307)
                      |+|+||.+.+++.|.++|+++
T Consensus       403 svGlEd~~dLi~dl~~Al~~~  423 (425)
T PRK06084        403 SIGIEHIDDIIADLAQALDAS  423 (425)
T ss_pred             EeccCCHHHHHHHHHHHHHhh
Confidence            999999999999999999865

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=4.5e-44  Score=313.82  Aligned_cols=304  Identities=37%  Similarity=0.554  Sum_probs=268.7

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEec-CCChHHHHhhcCCCceEEEEeCCCCCcccccc
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIGPWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~-~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~   78 (307)
                      |+|+ +++.+++++||+|++++..|.++...+...++..|+++++++ ..|+++++++++++|++|+++++.||+|.+.|
T Consensus        94 ~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~d  173 (437)
T PRK05613         94 QAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQPNTKAFFGETFANPQADVLD  173 (437)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCccCeEEEEECCCCCCCcccC
Confidence            3555 556677899999999999999987666667788999999997 45899999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChh------------------
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER------------------  140 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~------------------  140 (307)
                      +++|.++|+++|+++|+|++++.|....+..+|+|++++|+||+++|++...+|+++.+.+.                  
T Consensus       174 i~~I~~la~~~gi~livD~t~a~g~~~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~  253 (437)
T PRK05613        174 IPAVAEVAHRNQVPLIVDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTP  253 (437)
T ss_pred             HHHHHHHHHHcCCeEEEECCCccccccChHHhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCC
Confidence            99999999999999999999998887777788999999999999977666677887754220                  


Q ss_pred             -----------------HHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCC
Q 021783          141 -----------------LAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL  203 (307)
Q Consensus       141 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l  203 (307)
                                       ..+.........|..+++..+|+..++++++..|++++.+|+..+.++|+.++.+.++.+|++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~yPgl  333 (437)
T PRK05613        254 DPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHNENAIKVAEFLNNHEKVAKVNFAGL  333 (437)
T ss_pred             ccccccccccccchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcceEECCCC
Confidence                             001122344566889999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchHHHhhhc-cCCCceEEEEeC-CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCe
Q 021783          204 PEHPGHELHYSQA-KGAGSVLSFLTG-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL  281 (307)
Q Consensus       204 ~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  281 (307)
                      +++|++.++.++. .+.|++++|.++ +.+.+..|++.|+...+.+++|+..++.++|...+|..++.+.+...|..++.
T Consensus       334 ~~~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~~~slG~~~sLv~~p~~~~h~~~~~~~~~~~Gi~~~l  413 (437)
T PRK05613        334 KDSPWYATKEKLGLKYTGSVLSFDIKGGKDEAWAFIDALKLHSNLANIGDVRSLVVHPATTTHSQSDEAGLARAGITQAT  413 (437)
T ss_pred             CCCccHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHhCCcceEccCCCCCchhhcCCCccCCccCCHHHHHhcCCCCCe
Confidence            9999999998874 567899999995 56778999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeccCChHHHHHHHHHHHhc
Q 021783          282 VRISVGIEDVNDLISDLDKALRT  304 (307)
Q Consensus       282 iRis~~~~~~~~~i~~l~~~l~~  304 (307)
                      ||+|+|+||.+.+++.|.++|++
T Consensus       414 iRlsvGlE~~~dLi~Dl~~Al~~  436 (437)
T PRK05613        414 VRLSVGIEDIDDIIADLEGGFAA  436 (437)
T ss_pred             EEEEeccCCHHHHHHHHHHHHhh
Confidence            99999999999999999999975

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=100.00  E-value=7.8e-44  Score=308.24  Aligned_cols=300  Identities=27%  Similarity=0.461  Sum_probs=259.7

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .++.++++|||+|+++++.|++....+....+..|+++..++..+.++++++++++|++|++++|+||+|...|+
T Consensus        75 ~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~~i~~~tklV~lesp~Np~g~~~dl  154 (377)
T TIGR01324        75 LAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLIQPNTKVLFLEAPSSITFEIQDI  154 (377)
T ss_pred             HHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCcHHHH
Confidence            4566 566678999999999999998877555445677899999988766689999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  159 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (307)
                      ++|+++|+++|+++++|++|+.|....+.++|+|+++.|++|+++|++++.+|+++.+++.+ +.+.......|..+++.
T Consensus       155 ~~I~~la~~~g~~livD~t~a~g~~~~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~-~~l~~~~~~~G~~l~p~  233 (377)
T TIGR01324       155 PAIAKAARNPGIVIMIDNTWAAGLLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTW-DQLREHSYLMGQMVDAD  233 (377)
T ss_pred             HHHHHHHHHcCCEEEEECCCccccccCccccCceEEEecCceeccCCCCceEEEEEeCHHHH-HHHHHHHHHhCCCCCHH
Confidence            99999999999999999999999887888899999999999999999888999998876543 44444455668888999


Q ss_pred             hHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC--CHHHHHHHH
Q 021783          160 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--SLALSKHVV  237 (307)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  237 (307)
                      .+|...++++.+..|++++.+++..+.++|+.++.+.++++|+++++|+++++.++.++.+++++|.++  +.+.+.+|+
T Consensus       234 ~a~~~~rgl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~  313 (377)
T TIGR01324       234 DAYTTLRGLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFL  313 (377)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988877778899999995  466789999


Q ss_pred             hcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       238 ~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      +.|+..++.+++|+..++..+|+.    ..+...+...|..++.||+|+|+||.+.+++.|.++|+++
T Consensus       314 ~~l~~~~~~~slG~~~sl~~~~~~----~~~~~~~~~~~~~~~liR~svGlE~~~dl~~dl~~al~~~  377 (377)
T TIGR01324       314 DHLQLFGLGYSWGGYESLALCNQP----ELGHRPNIKRNLEGPLIRVHIGLENVDDLKADLKAGFEAI  377 (377)
T ss_pred             HhCCcceEeccCCCccceeecCCC----CCCHHHHHhccCCCCEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence            999999999999999998763321    1222233456666789999999999999999999999764

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=100.00  E-value=6.3e-44  Score=310.73  Aligned_cols=301  Identities=44%  Similarity=0.731  Sum_probs=269.4

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .++.+++++||+|+++.+.|++....+...++..|+++++++.+|++++++++++++++|++++|+||+|.+.|+
T Consensus        79 ~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~le~p~np~g~~~dl  158 (380)
T TIGR01325        79 MSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWEAAVKPNTKLVFVETPSNPLGELVDI  158 (380)
T ss_pred             HHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCeeeCH
Confidence            3455 455668899999999999998887777777888999999999999999999999899999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  159 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (307)
                      ++|.++|+++|+++|+|++|+.+....+...|+|+++.|++|+++|+....+|+++++++ ..+.+.......+..+++.
T Consensus       159 ~~I~~la~~~gi~livD~a~~~~~~~~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~-~~~~l~~~~~~~g~~~~p~  237 (380)
T TIGR01325       159 AALAELAHAIGALLVVDNVFATPVLQQPLKLGADVVVYSATKHIDGQGRVMGGVIAGSEE-LMAEVAVYLRHTGPAMSPF  237 (380)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeeccceecCCCCeEEEEEEeCHH-HHHHHHHHHHhhCCCCCHH
Confidence            999999999999999999998776666667799999999999997765456788888765 4444555555567778888


Q ss_pred             hHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhc
Q 021783          160 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVET  239 (307)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (307)
                      .++++..+++.+..|++++.++++.+.++|+.++.+.++++|+++++|+++++.++..+.|++++|.+++.+.+..|++.
T Consensus       238 ~a~~~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~f~~~  317 (380)
T TIGR01325       238 NAWVLLKGLETLSLRMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVADRAAAWKVLDA  317 (380)
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHc
Confidence            89999999999999999999999999999999999999999999999999999888878899999999877778999999


Q ss_pred             CCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHH
Q 021783          240 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  302 (307)
Q Consensus       240 l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l  302 (307)
                      |+...+.+++|+..++..+|...+|..++.+.+...|..++.||+|+|+||.+.+++.|.++|
T Consensus       318 l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al  380 (380)
T TIGR01325       318 VELVSITNNLGDAKSTITHPATTTHGRMQPEERAAAGIGDGLVRLSVGLEDVDDLIADLKRAL  380 (380)
T ss_pred             CCcceEcccCCCCCeeeeCCCccCcccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHhhC
Confidence            999999999999999999999999999999888899999999999999999999999999875

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK06460 hypothetical protein; Provisional

Probab=100.00  E-value=9.1e-44  Score=308.83  Aligned_cols=303  Identities=38%  Similarity=0.618  Sum_probs=267.0

Q ss_pred             cHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            2 AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         2 aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      +|+ .++.++++|||+|+++.+.|++.+..+...++..|++++.++.++.+.+++.+++++++|++++|+||||.+.|++
T Consensus        71 ~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~~~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~  150 (376)
T PRK06460         71 GAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGSDNIIEKAKSKRYDVVFVENITNPLLRVVDIT  150 (376)
T ss_pred             HHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCcccCHH
Confidence            455 4556688999999999998887777777778889999999998776667766678899999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhh
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  160 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (307)
                      +|.++|+++|+++|+|++|+.+....+...++|+++.|+||+++|++++++|+++.+++ +.+.+.......+...++..
T Consensus       151 ~I~~la~~~g~~vivDea~~~~~~~~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~~-l~~~l~~~~~~~g~~~~~~~  229 (376)
T PRK06460        151 ELSKVCKENGSILIVDATFSTPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAGYGK-LLNVIDQMRRTLGTSLDPHA  229 (376)
T ss_pred             HHHHHHHHcCCEEEEECCcCccccCChhhcCCCEEEeecceeccCCCCceEEEEecCHH-HHHHHHHHHHhcCCCCCHHH
Confidence            99999999999999999998765444445679999999999998887788999988744 65656655655666677788


Q ss_pred             HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC-CHHHHHHHHhc
Q 021783          161 CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVET  239 (307)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  239 (307)
                      ++.++.+++.+..+++++.++++.+.++|++++.+.++.+|++.++|+++++.++.++.|++++|.++ +.+.+..+++.
T Consensus       230 a~~~l~~~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~~~~~~~~~~  309 (376)
T PRK06460        230 AYLTLRGIKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKS  309 (376)
T ss_pred             HHHHHhchhhHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcHHHHHHHHHh
Confidence            89988999999999999999999999999999999999999999999999998888888999999995 56778999999


Q ss_pred             CCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          240 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       240 l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      ++...+.+++|+..++..+|...+|..++.+.+...|..++.||+|+|+||.+.+++.|.++|+++
T Consensus       310 l~~~~~~~s~Gg~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~  375 (376)
T PRK06460        310 LKLIIPAQTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGIEDVNDLIEDLDRALSTL  375 (376)
T ss_pred             CCcceeccCCCCCceEEeCccccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999764

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=8.7e-44  Score=313.10  Aligned_cols=304  Identities=38%  Similarity=0.625  Sum_probs=269.9

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .++.++++|||+|+++.+.|.+....+...+...|++++.++.+|+++++++++++|++|++++|+||+|.+.|+
T Consensus        88 ~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~vesp~NptG~v~dl  167 (427)
T PRK05994         88 HAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITPRTKAIFIESIANPGGTVTDI  167 (427)
T ss_pred             HHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeecCH
Confidence            3466 555668999999999999999887777666788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcCh-----------------h--
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-----------------R--  140 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~-----------------~--  140 (307)
                      ++|.++|+++|+++|+|++++.+....+..+|+|+++.|++|+++|+.+..+|+++....                 .  
T Consensus       168 ~~I~~la~~~gi~livD~a~a~~~~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~  247 (427)
T PRK05994        168 AAIAEVAHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYH  247 (427)
T ss_pred             HHHHHHHHHcCCEEEEECCccccccCCccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhh
Confidence            999999999999999999999888777778899999999999999888888888774321                 0  


Q ss_pred             ---HHH----------HHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCC
Q 021783          141 ---LAK----------ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP  207 (307)
Q Consensus       141 ---~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~  207 (307)
                         +.+          .........|..+++..+|+...+++.+..|+++..+++..+.++|+.++.+..+.+|+++++|
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~~l~tL~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~~~~  327 (427)
T PRK05994        248 GLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGLPDDP  327 (427)
T ss_pred             hhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCc
Confidence               110          1111234567789999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHhhh-ccCCCceEEEEeC-CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEE
Q 021783          208 GHELHYSQ-AKGAGSVLSFLTG-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS  285 (307)
Q Consensus       208 ~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis  285 (307)
                      +++++.++ +++.|++++|.++ +.+.+.+|++.|+...+.+++|+..++.++|...+|..++.+.+...|.+++.||+|
T Consensus       328 ~~~~~~~~~~~g~g~~~sf~l~~~~~~~~~~~~~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRls  407 (427)
T PRK05994        328 YHALAQKYSPKGAGAVFTFGLKGGYEAGVKLVSSLKLFSHLANIGDTRSLVIHPASTTHRQLTDEQKVAAGAGPDVVRLS  407 (427)
T ss_pred             cHHHHHHhcCCCceEEEEEEecCCHHHHHHHHHhCCcceeccccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCcEEEE
Confidence            99999887 4678999999995 667789999999999999999999999999999999999999999999999999999


Q ss_pred             eccCChHHHHHHHHHHHhc
Q 021783          286 VGIEDVNDLISDLDKALRT  304 (307)
Q Consensus       286 ~~~~~~~~~i~~l~~~l~~  304 (307)
                      +|+||.+.+++.|.++|++
T Consensus       408 vGlE~~~dli~dl~~Al~~  426 (427)
T PRK05994        408 IGIEDVDDIIADLEQALAK  426 (427)
T ss_pred             eccCCHHHHHHHHHHHHhh
Confidence            9999999999999999975

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=9.9e-44  Score=312.01  Aligned_cols=305  Identities=38%  Similarity=0.613  Sum_probs=268.2

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .++.+++++||+|++++.+|.++...+...+...|+++++++.+|+++++++++++|++|++++++||+|.+.|+
T Consensus        89 t~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~l~~~i~~~TklV~~e~~~np~g~v~Di  168 (433)
T PRK08134         89 QAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPGDIDGWRAAIRPNTRLLFGETLGNPGLEVLDI  168 (433)
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCcccCcccCH
Confidence            4677 456667899999999999999887766666678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChh-------------------
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-------------------  140 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~-------------------  140 (307)
                      ++|.++|+++|+++|+|++++.|....+..+|+|+++.|.+|+++|+..+.+|+++.....                   
T Consensus       169 ~~I~~la~~~gi~livD~t~a~~~~~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~  248 (433)
T PRK08134        169 PTVAAIAHEAGVPLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFH  248 (433)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEeccccccCCCCCceEEEEEecCccccccccccccccCCccccc
Confidence            9999999999999999999999988877788999999999999987766677776642110                   


Q ss_pred             -------------HHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCC
Q 021783          141 -------------LAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP  207 (307)
Q Consensus       141 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~  207 (307)
                                   ..+.........+..+++..+|+...+++.+..|+++..+++..+.++|+.++.+..+.+|++.++|
T Consensus       249 g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~~gL~tl~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~l~~~p  328 (433)
T PRK08134        249 GMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMERHVANTRKVVAFLASHPAVARVAHPELESHP  328 (433)
T ss_pred             ccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCc
Confidence                         0001111223456788999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHhhhc-cCCCceEEEEeC-CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEE
Q 021783          208 GHELHYSQA-KGAGSVLSFLTG-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS  285 (307)
Q Consensus       208 ~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis  285 (307)
                      ++.+..++. ++.|++++|.++ +.+.+.+|++.|+...+.+++|...++.++|...+|..++.+.+...|..++.||+|
T Consensus       329 ~~~~~~~~~~~g~gg~~s~~l~~~~~~~~~f~~~l~l~~~~~slG~~~sL~~~p~~~~h~~~~~~~~~~~Gi~~~liRls  408 (433)
T PRK08134        329 DHALAKRLLPRGAGSVFSFDLKGGRAAGRKFIESLKLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGEGTIRLS  408 (433)
T ss_pred             cHHHHHHhCCCCCceEEEEEecCCHHHHHHHHHhCCcceeccccCCCCceeeCCCccCcccCCHHHHHhcCCCCCeEEEE
Confidence            999987765 668999999995 567789999999999999999999999999999999999999999999999999999


Q ss_pred             eccCChHHHHHHHHHHHhcC
Q 021783          286 VGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       286 ~~~~~~~~~i~~l~~~l~~~  305 (307)
                      +|+||.|.+++.|.++|+++
T Consensus       409 vGlE~~~dli~dl~~Al~~~  428 (433)
T PRK08134        409 IGLEDADDLIDDLKRALKAA  428 (433)
T ss_pred             eccCCHHHHHHHHHHHHHhh
Confidence            99999999999999999864

>PRK07503 methionine gamma-lyase; Provisional

Probab=100.00  E-value=1.1e-43  Score=310.68  Aligned_cols=304  Identities=39%  Similarity=0.668  Sum_probs=268.7

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .++.++++|||+|+++.+.|......+...++..|++++.++.+|+++++++++++|++|++++|+||+|.+.|+
T Consensus        90 ~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~le~p~NPtG~~~di  169 (403)
T PRK07503         90 MGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAISDKTRMVYFETPANPNMRLVDI  169 (403)
T ss_pred             HHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCCCHHHHHHhcCccCcEEEEeCCCCCCCeeeCH
Confidence            3566 445567899999999999998777666566788999999999999999999999899999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH--HHHhcCCCCC
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEGSGLA  157 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~--~~~~~~~~~~  157 (307)
                      ++|.++|+++|+++|+|++|+.+....+..+++|++++|++|+++|+.++++|+++.+ +.+.+.+..  .....+..++
T Consensus       170 ~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~-~~l~~~l~~~~~~~~~g~~~s  248 (403)
T PRK07503        170 AAVAEIAHGAGAKVVVDNTYCTPYLQRPLELGADLVVHSATKYLGGHGDITAGLVVGG-KALADRIRLEGLKDMTGAVMS  248 (403)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEccccccccCCCceeEEEEEcC-HHHHHHHHhhhHHhCcCCCCC
Confidence            9999999999999999999998766555567899999999999987777889999865 445554542  2444567888


Q ss_pred             hhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC-CHHHHHHH
Q 021783          158 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHV  236 (307)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  236 (307)
                      +..+++...+++.+..|++++.++++.+.++|+.++.+.++++|++.++|++.+..++.++.+++++|.++ +.+.+.++
T Consensus       249 ~~~a~l~l~~L~tl~~r~~~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~  328 (403)
T PRK07503        249 PFDAFLLMRGLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKGGIAAGRRF  328 (403)
T ss_pred             HHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEECCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988877778999999994 56667899


Q ss_pred             HhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          237 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       237 ~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      ++.++.....+++|...++.++|...+|..++.+.+...|..++.||+|+|+||.+.+++.|.++|+++
T Consensus       329 ~~~l~l~~~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~Al~~~  397 (403)
T PRK07503        329 MNALQLFARAVSLGDAESLAQHPASMTHSTYTPEERAEHGISEGLVRLSVGLEDVADILADLAQALDAC  397 (403)
T ss_pred             HHhCCcceeecccCCCCccCcCCCCCccccCCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Confidence            999998888999999999999998888999999999999999999999999999999999999999764

>PRK07049 methionine gamma-lyase; Validated

Probab=100.00  E-value=3.6e-43  Score=308.87  Aligned_cols=303  Identities=34%  Similarity=0.609  Sum_probs=267.2

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEec-CCChHHHHhhcC-----CCceEEEEeCCCCCc
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIG-----PWTKLVWVESPTNPR   73 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~-~~d~~~l~~~l~-----~~~~~v~~~~~~n~t   73 (307)
                      |+|+ .++.+++++||+|++++|.|+.+...+...++..|++++.++ ..|++++++.+.     +++++|++++|+|||
T Consensus       108 ~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~~~d~~~l~~~l~~~~~~~~tklv~lesP~NPt  187 (427)
T PRK07049        108 MSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFADGLSEAAIGAAAEAAAAKGRVSLILIETPANPT  187 (427)
T ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeCCCCHHHHHHHHHhhccCCCceEEEEECCCCCC
Confidence            3566 455678999999999999999988665555678899866665 457788876663     579999999999999


Q ss_pred             cccccHHHHHHHHHH------cCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH
Q 021783           74 QQICDIRKIAEMAHA------HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  147 (307)
Q Consensus        74 G~~~~~~~l~~~~~~------~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~  147 (307)
                      |.++|++++.+++++      +++++|+|++|..+....+...++|+++.|+||+++|++|+|+|+++.+++ +.+.+..
T Consensus       188 g~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~pl~~g~divv~S~SK~~gG~~glr~G~vv~~~~-l~~~l~~  266 (427)
T PRK07049        188 NSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAGAVLGRKA-LIRQVRA  266 (427)
T ss_pred             CcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCccccCCCEEEEcCceeecCCCCcEEEEEECCHH-HHHHHHH
Confidence            999999999999988      899999999998776555667789999999999998889999999997744 6666666


Q ss_pred             HHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCC--CCCCchHHHhhhccCCCceEEE
Q 021783          148 LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL--PEHPGHELHYSQAKGAGSVLSF  225 (307)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~  225 (307)
                      .....+..+++..++++.++++.+..|++++.++++.+.++|+.++.+.+++||++  +++|+++++.++..+.|++++|
T Consensus       267 ~~~~~g~~ls~~~a~l~~r~L~tl~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~  346 (427)
T PRK07049        267 LRSAIGTQLDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSF  346 (427)
T ss_pred             HHHhcCCCCCHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEE
Confidence            66667788999999999999999999999999999999999999999999999975  8999999998887788999999


Q ss_pred             EeC-CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 021783          226 LTG-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  304 (307)
Q Consensus       226 ~~~-~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  304 (307)
                      .+. +.+.+.+|++.|+...+.+++|+..++.++|...+|..++.+.+...|..++.||+|+|+||.|.+++.|.++|++
T Consensus       347 ~~~~~~~~~~~f~~~l~l~~~~~slG~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~  426 (427)
T PRK07049        347 DIKGGQAAAFRFLNALQIFKLAVSLGGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIGIEHPDDLIADLAQALDA  426 (427)
T ss_pred             EEcCCHHHHHHHHHcCcccEEcccCCCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHHhc
Confidence            995 5677899999999999999999999999999999999999999999999999999999999999999999999975

>PRK06767 methionine gamma-lyase; Provisional

Probab=100.00  E-value=1.1e-42  Score=303.67  Aligned_cols=299  Identities=39%  Similarity=0.661  Sum_probs=263.5

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .++.+++++||+|+++++.|+.....+.......|+++..++..|+++++++++++|++|++++|+||+|.+.|+
T Consensus        86 ~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~l~~~i~~~tklV~lesp~NptG~v~dl  165 (386)
T PRK06767         86 MAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDMETEADIENKIRPNTKLIFVETPINPTMKLIDL  165 (386)
T ss_pred             HHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhhCcCceEEEEeCCCCCCceecCH
Confidence            3466 455678899999999999998888777666777899999888889999999999899999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  159 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (307)
                      ++|.++|+++|+++|+|++|+.+....+...|+|+++.|++|+++|+.+.++|+++++++.+.+.........+..+++.
T Consensus       166 ~~I~~la~~~g~~vivD~a~a~~~~~~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~  245 (386)
T PRK06767        166 KQVIRVAKRNGLLVIVDNTFCSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPF  245 (386)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCCchhcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCCCCHH
Confidence            99999999999999999999987766666779999999999999877666689999987766665555555566677888


Q ss_pred             hHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC-CHHHHHHHHh
Q 021783          160 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVE  238 (307)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  238 (307)
                      .+++...+++.+..|++++.++++.+.++|++++.+..+.+|      ++.++.++.++.+++++|.++ +.+.+..|++
T Consensus       246 ~a~l~~~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p------~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~  319 (386)
T PRK06767        246 DAWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYP------EGELASRQMKRGGGVISFSIKGGKEETQAFIN  319 (386)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECC------CcHHHHHhCCCCCceEEEEEcCCHHHHHHHHH
Confidence            899999999999999999999999999999999999888886      556666666667899999995 5567899999


Q ss_pred             cCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       239 ~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      .|+..++.+++|+..++.++|...+|..++.+.+...|..++.||+|+|+||.+.+++.|.++|+++
T Consensus       320 ~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE~~~dl~~dl~~al~~~  386 (386)
T PRK06767        320 DLHFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGLESWEDIVSDLEQALKKI  386 (386)
T ss_pred             hCCccEEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999753

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=100.00  E-value=1.6e-42  Score=305.02  Aligned_cols=302  Identities=40%  Similarity=0.640  Sum_probs=263.0

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .++.+++++||+|+++++.|++....+...++..|++++.++.+|++++++.+++++++|++++|+||+|.+.|+
T Consensus        82 ~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl  161 (418)
T TIGR01326        82 QAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAIDENTKAVFAETIGNPAINVPDI  161 (418)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeecCH
Confidence            3556 455678899999999999998887777777888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHH-----------------
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA-----------------  142 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~-----------------  142 (307)
                      ++|.++|+++|+++|+|++|+.+....+...|+|+++.|++|+++| +|.+.|+++++++.+.                 
T Consensus       162 ~~I~~la~~~~i~livD~t~~~~~~~~~l~~g~Divv~S~sK~l~g-~G~~lGg~v~~~~~~~~~~~~~~~~~~~~~~q~  240 (418)
T TIGR01326       162 EAIAEVAHAHGVPLIVDNTFATPYLCRPIDHGADIVVHSATKYIGG-HGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYH  240 (418)
T ss_pred             HHHHHHHHHcCCEEEEECCCchhhcCCchhcCCeEEEECccccccC-CccceEEEEEecccccccccccccccCCCCccc
Confidence            9999999999999999999998765566677899999999999965 5666666666432110                 


Q ss_pred             ---------------HHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCC
Q 021783          143 ---------------KELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP  207 (307)
Q Consensus       143 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~  207 (307)
                                     +.........|..+++..+|+...+++.+..|++++.+++..+.++|..++++..+++|++.++|
T Consensus       241 a~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~~~~~~l~tl~~R~~~~~~~a~~la~~L~~~~~V~~V~yP~l~~~~  320 (418)
T TIGR01326       241 GLVFTETFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQGLETLSLRMERHVENALKVAEFLEAHPKVAWVNYPGLASHP  320 (418)
T ss_pred             cchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHCCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCc
Confidence                           11111233446677889999999999999999999999999999999999999999999999999


Q ss_pred             chHHHhhhc-cCCCceEEEEeC-CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEE
Q 021783          208 GHELHYSQA-KGAGSVLSFLTG-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS  285 (307)
Q Consensus       208 ~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis  285 (307)
                      +++++.++. ++.|++++|.++ +.+.+.+|++.|+...+.+++|...++.++|...+|..++.+.+...|..++.||||
T Consensus       321 ~~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~s  400 (418)
T TIGR01326       321 HHALAKKYLPKGFGAVLSFEIKGGREAGKKFIDALKLASHLANVGDAKSLVIHPASTTHQQLSEEEQLKAGVTPGLIRLS  400 (418)
T ss_pred             cHHHHHHhccCCCcceEEEEecCCHHHHHHHHHhCCcceeccccCCCCceeeCCCCCCcccCCHHHHHhcCCCCCeEEEE
Confidence            999998776 678899999994 566688999999999999999999999999999999999998888999999999999


Q ss_pred             eccCChHHHHHHHHHHHh
Q 021783          286 VGIEDVNDLISDLDKALR  303 (307)
Q Consensus       286 ~~~~~~~~~i~~l~~~l~  303 (307)
                      +|+||.+.+++.|.++|+
T Consensus       401 vGlE~~~dl~~dl~~Al~  418 (418)
T TIGR01326       401 VGIENIDDIIADLEQALE  418 (418)
T ss_pred             ecCCCHHHHHHHHHHhhC
Confidence            999999999999999874

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK07050 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=4.3e-42  Score=299.62  Aligned_cols=299  Identities=28%  Similarity=0.471  Sum_probs=263.2

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .++.++++|||+|+++++.|+.+...+...+...|+++++++..+.+++++.++++|++|++++|+||+|...|+
T Consensus        90 t~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~l~~~i~~~tklV~le~p~Np~~~~~di  169 (394)
T PRK07050         90 LAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADLIQPNTRLIWLEAPGSVTMEVPDV  169 (394)
T ss_pred             HHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCccHhhH
Confidence            3566 556678999999999999999888666666788999999999878889999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  159 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (307)
                      ++|.++|+++|+++|+|++|+.|....+...|+|+++.|++|+++|..++++|+++++++.+.+.+.......|...++.
T Consensus       170 ~~I~~ia~~~gi~livD~a~a~~~~~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~  249 (394)
T PRK07050        170 PAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSAD  249 (394)
T ss_pred             HHHHHHHHHcCCEEEEECCcccccccCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHH
Confidence            99999999999999999999998877778889999999999999888888899999887778777777777778888899


Q ss_pred             hHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC---CHHHHHHH
Q 021783          160 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG---SLALSKHV  236 (307)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  236 (307)
                      .++++.++++.+..|++++.+++..+.++|++++.+..+++|++.++|++.++.++..+.+++++|.+.   +.+...++
T Consensus       250 ~a~l~lr~l~tl~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~  329 (394)
T PRK07050        250 DCSLVLRGLPSLQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQVDAF  329 (394)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998887766677899999995   35779999


Q ss_pred             HhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          237 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       237 ~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      ++.++..++.+++|+..++.. |....|...+ +    .+...+.||+|+|+||.+.+++.|.++|+++
T Consensus       330 ~~~l~~~~~~~s~G~~~sl~~-~~~~~~~~~~-~----~~~~~~~iR~svGlE~~~dl~~dl~~al~~~  392 (394)
T PRK07050        330 VEALELFAIGWSWGGACSLAM-PYDVASMRTA-K----WPHRGTLVRLYIGLEDEADLIADLEQALEAA  392 (394)
T ss_pred             HHcCCCCeeccccCCccceEe-eCcccccchh-h----cCCCCCEEEEEeCcCCHHHHHHHHHHHHHHh
Confidence            999999999999999999887 6555554432 1    2244589999999999999999999999764

>PRK06434 cystathionine gamma-lyase; Validated

Probab=100.00  E-value=2.1e-41  Score=292.23  Aligned_cols=294  Identities=35%  Similarity=0.600  Sum_probs=262.0

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCC-CceEEEEeCCCCCcccccc
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~   78 (307)
                      |+|+ .++.+++++||+|+++...|+..+..+...+...|+++++++.++.+.++  +++ ++++|++++++||++.+.|
T Consensus        89 ~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~~~~~~--l~~~~tklv~~e~~snpt~~v~D  166 (384)
T PRK06434         89 MGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLNSLD--FDPSNYDLIYAESITNPTLKVPD  166 (384)
T ss_pred             HHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCCChhhee--ecCCCeeEEEEEcCCCCCceeec
Confidence            5677 56667899999999999999888877777888999999999987666655  454 7999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCCh
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP  158 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (307)
                      +++|.++|++++  +++|++++.+....+...|+|++++|.+|+++|+.++.+|+++++++.+.+.+.......|..+++
T Consensus       167 i~~I~~la~~~~--lvVD~t~~s~~~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~  244 (384)
T PRK06434        167 IKNVSSFCHEND--VIVDATFASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDP  244 (384)
T ss_pred             HHHHHHHHHHcC--eEEECCCCCcccCCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCH
Confidence            999999999998  567999988877777788999999999999988887889999988777766666665566778889


Q ss_pred             hhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHh
Q 021783          159 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVE  238 (307)
Q Consensus       159 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (307)
                      ..+|+...+++.+..|++++.++++.+.++|+.++.+.+++||+++      ++.++.++.|++++|.+++.+.+..|++
T Consensus       245 ~~A~l~~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~------~~~~~~~g~g~~~sf~l~~~~~~~~f~~  318 (384)
T PRK06434        245 IQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTE------IGKKVLRGFGGMLSFELRSMEDVHKFIR  318 (384)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChH------HHHHhcCCCCceEEEEECCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999874      5666666789999999987888999999


Q ss_pred             cCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 021783          239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  304 (307)
Q Consensus       239 ~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  304 (307)
                      .|+...+.+++|+..++.++|...+|..++.+.+...|..++.||||+|+||.+.+++.|.++|++
T Consensus       319 ~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~e~~~~~gi~~~liRlsvGlEd~~dLi~dl~~Al~~  384 (384)
T PRK06434        319 NLEIPMVAASLGGVESLITLPVETSHSSLSPEERERLGISDNLVRFSIGIEDIDDLIKDIENALSK  384 (384)
T ss_pred             hCCcceEccCCCCCCeeeECCCccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999864

>PRK07582 cystathionine gamma-lyase; Validated

Probab=100.00  E-value=4.1e-41  Score=291.43  Aligned_cols=290  Identities=36%  Similarity=0.569  Sum_probs=248.5

Q ss_pred             cHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            2 AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         2 aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      +|+ .++.+++++||+|+++++.|+.+.......++..|++++.++.++...   .+.+++++|++++|+||+|.+.|++
T Consensus        76 ~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~---~~~~~t~lV~le~p~NPtg~v~di~  152 (366)
T PRK07582         76 AAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGMAE---AALAGADLVLAETPSNPGLDVCDLA  152 (366)
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCChHH---HhccCceEEEEECCCCCCCCccCHH
Confidence            456 455568899999999999998887555445567899999999865432   3346899999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhh
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  160 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (307)
                      +|.++|+++|+++++|++|+.+....+.++++|++++|++|+++|++|+++|+++++++.+.+.+.......+..+++..
T Consensus       153 ~I~~~a~~~g~~lvVD~t~~~~~~~~p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~  232 (366)
T PRK07582        153 ALAAAAHAAGALLVVDNTTATPLGQRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFE  232 (366)
T ss_pred             HHHHHHHHcCCEEEEECCCCCccccCchhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHH
Confidence            99999999999999999997654445556789999999999999999999999998777777777777777788888999


Q ss_pred             HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcC
Q 021783          161 CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT  240 (307)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  240 (307)
                      +|+...+++.+..|++++.++++.+.++|+.++.+..+.+|+++++|+++++.++.++.+++++|.+++.+.+.++++.+
T Consensus       233 a~l~~r~l~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~~~~~~~~~~~l  312 (366)
T PRK07582        233 AWLAHRSLGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELADAAAAERFVAAS  312 (366)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCCHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999998888888999999998888899999999


Q ss_pred             CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       241 ~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      +...+.+++|+..++...+...           ..+.+++.||+|+|+||.+.+++.|.++|+++
T Consensus       313 ~~~~~~~s~G~~~sl~~~~~~~-----------~~~~~~~liR~svGlE~~~dli~dl~~al~~~  366 (366)
T PRK07582        313 RLVVAATSFGGVHTSADRRARW-----------GDAVPEGFVRLSCGIEDTDDLVADLERALDAL  366 (366)
T ss_pred             CcceecccCCCccchhhhHHHc-----------CCCCCCCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence            9988999999987654322111           12255789999999999999999999999764

>PLN02242 methionine gamma-lyase

Probab=100.00  E-value=5.2e-41  Score=294.18  Aligned_cols=302  Identities=30%  Similarity=0.460  Sum_probs=258.8

Q ss_pred             cHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhh-cccCCcEEEEecCCChHHHHhhcCC-CceEEEEeCCCCCcccccc
Q 021783            2 AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRV-TPKTGVVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         2 aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~-~~~~g~~~~~v~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~   78 (307)
                      +|+ .++.+++++||+|+++++.|+.+...+... .+..|++++.++..|++++++++++ ++++|++++|+||||.+.|
T Consensus       102 ~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i~~~~tklV~lesp~NPtG~v~d  181 (418)
T PLN02242        102 SAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLYFESISNPTLTVAD  181 (418)
T ss_pred             HHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhcCcCCCEEEEEecCCCCCCcccC
Confidence            455 566678999999999999998876554333 3458999999999999999999987 5999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH----HhcCC
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ----NAEGS  154 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~----~~~~~  154 (307)
                      +++|.++|+++|+++|+|++|+... ..+..+|+|++++|+||+++++...++|+++++++.+ +.+....    ...+.
T Consensus       182 l~~I~~la~~~gi~livDea~~~~~-~~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li-~~l~~~~~~~~~~~g~  259 (418)
T PLN02242        182 IPELARIAHEKGVTVVVDNTFAPMV-LSPARLGADVVVHSISKFISGGADIIAGAVCGPAELV-NSMMDLHHGALMLLGP  259 (418)
T ss_pred             HHHHHHHHHHhCCEEEEECCCCccC-CCHHHcCCcEEEEeCccccCCCCCceEEEEEcCHHHH-HHHHHHhhhhhhccCC
Confidence            9999999999999999999996433 3555668999999999999776656689999876543 4444332    23455


Q ss_pred             CCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhc---cCCCceEEEEeCCHH
Q 021783          155 GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA---KGAGSVLSFLTGSLA  231 (307)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  231 (307)
                      .+++..+++...+++.+..+++++.++++.+.++|+.++  ..+.+|++.++|++.++.++.   ++.|++++|.+.+.+
T Consensus       260 ~~~~~~A~l~~~~l~tl~~r~~~~~~~a~~la~~L~~~~--~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~~~  337 (418)
T PLN02242        260 TMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKELG--LKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTEE  337 (418)
T ss_pred             CCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCC--CEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECCHH
Confidence            677788999999999999999999999999999999985  388899999999999988766   477899999998888


Q ss_pred             HHHHHHhcCCcc----eeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCC-hHHHHHHHHHHHhcCC
Q 021783          232 LSKHVVETTKYF----SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED-VNDLISDLDKALRTGP  306 (307)
Q Consensus       232 ~~~~~~~~l~~~----gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~-~~~~i~~l~~~l~~~~  306 (307)
                      .+..|++.++..    .+.++.|+..++.++|...+|..++.+.+...|.+++.+|||+|+|+ .+.+++.|.++|+++.
T Consensus       338 ~~~~f~~~l~~~~~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGlE~~~~dli~dl~~al~~~~  417 (418)
T PLN02242        338 RANRLMRYLQNSTQFGFMAVSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGYTGTLEQRWSQFEKALSAMK  417 (418)
T ss_pred             HHHHHHHHhhcccccceeeecCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecCCCCHHHHHHHHHHHHHHhh
Confidence            899999999865    77899999999999999999999999888899999999999999995 9999999999999875


Q ss_pred             C
Q 021783          307 L  307 (307)
Q Consensus       307 ~  307 (307)
                      |
T Consensus       418 ~  418 (418)
T PLN02242        418 L  418 (418)
T ss_pred             C
Confidence            4

>PRK05968 hypothetical protein; Provisional

Probab=100.00  E-value=9.7e-41  Score=291.16  Aligned_cols=297  Identities=34%  Similarity=0.556  Sum_probs=256.6

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+ .++.++++|||+|+++.+.|.+....+...++..|+++++++.+|++++++.+ ++|++|++++|+|+++...|+
T Consensus        88 ~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i-~~tklV~ie~pt~~~~~~~dl  166 (389)
T PRK05968         88 MAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKAL-PGAKLLYLESPTSWVFELQDV  166 (389)
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCCCHHHHHHhc-ccCCEEEEECCCCCCCcHHHH
Confidence            3456 45566889999999999999988877777788899999999999999999998 678999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH-HHHhcCCCCCh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLAP  158 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~-~~~~~~~~~~~  158 (307)
                      ++|.++|+++|+++|+|++|+.+....+..+|+|+++.|++|+++|++++++|+++.+++.+ +.+.. .....+..+++
T Consensus       167 ~~i~~la~~~gi~vivD~a~a~~~~~~p~~~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~-~~l~~~~~~~~g~~~~~  245 (389)
T PRK05968        167 AALAALAKRHGVVTMIDNSWASPVFQRPITLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHI-ARINAEAYPYLGAKLSP  245 (389)
T ss_pred             HHHHHHHHHcCCEEEEECCCcchhccCchhcCCcEEEeeccccccCCCCeEEEEEEECHHHH-HHHHHHHHHhCCCCCCh
Confidence            99999999999999999999988765566779999999999999888777899998776544 33333 33345677888


Q ss_pred             hhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHh
Q 021783          159 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVE  238 (307)
Q Consensus       159 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (307)
                      ..+++...+++.+..|+++..++++.+.++|+.++.+..+.+|++.++|..     ...+.+++++|.+++.....+|.+
T Consensus       246 ~~A~~~l~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~-----~~~g~g~~~sf~~~~~~~~~~f~~  320 (389)
T PRK05968        246 FEAWLLLRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPA-----GLSGTSGLFSFIFREGIDVRAFAD  320 (389)
T ss_pred             HHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHH-----hCCCCceEEEEEECCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999888732     234568899999975556899999


Q ss_pred             cCCcceeecCCCCccceeecccccCCCC-CcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          239 TTKYFSITVSFGSVKSLISMPCFMSHAS-IPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       239 ~l~~~gi~v~~g~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      .|+..++.+++|..+++.+ |...+|.. .+.+.+...|.+++.+|+|+|+||.+.+++.|.++|++.
T Consensus       321 ~L~~~~~~~s~G~~~slv~-p~~~~~~~~~~~~~~~~~gi~~~liR~SvGlE~~~dl~~dl~~al~~~  387 (389)
T PRK05968        321 ALKLFRLGVSWGGHESLVV-PAEVVLQQKAQPNSAARFGVSPRSVRLHVGLEGTEALWADLEQALAAA  387 (389)
T ss_pred             hCCccEEecCCCCCCceee-eCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHHh
Confidence            9999999999999999888 87777766 447777788999999999999999999999999999865

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=100.00  E-value=2.1e-40  Score=285.80  Aligned_cols=285  Identities=42%  Similarity=0.712  Sum_probs=250.5

Q ss_pred             CcHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         1 ~aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      |+|+.+++.++++||+|+++.+.|......+.......+.++.+.  .|+++++++++++|++|++++|+||+|.+.|++
T Consensus        79 ~aAi~~~l~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~~~--~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~  156 (364)
T PRK07269         79 MSAIVLAFSVFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTYA--NTEEELIAAIEEDTDIVYIETPTNPLMVEFDIE  156 (364)
T ss_pred             HHHHHHHHHHhCCCCEEEEecCCcCchHHHHHHHHhcCcEEEEec--CCHHHHHHhcCcCceEEEEECCCCCCCeeeCHH
Confidence            466655556789999999999999887754444434345544443  489999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhh
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  160 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (307)
                      +|+++|+++|+++++|++|+.+....+...|+|+++.|++|+++|+..+.+|+++++++.+.+.+.......|..+++..
T Consensus       157 ~I~~la~~~gi~vvvD~t~~~~~~~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~  236 (364)
T PRK07269        157 KVAKLAHAKGAKVIVDNTFYSPIYQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFD  236 (364)
T ss_pred             HHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHH
Confidence            99999999999999999998887666777899999999999999888888999999877777767666666677889999


Q ss_pred             HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcC
Q 021783          161 CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT  240 (307)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  240 (307)
                      +|+...+++++..|++++.++++.+.++|+.++.+..+.+|+                .+++++|.+.+.+.+.++++.+
T Consensus       237 a~l~~~~L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg----------------~gg~~sf~~~~~~~~~~f~~~l  300 (364)
T PRK07269        237 SYLLMRGLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYTG----------------KGGMISFKVADETRIPHILNSL  300 (364)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCC----------------cCcEEEEEECCHHHHHHHHHhC
Confidence            999999999999999999999999999999999888888875                3889999998777789999999


Q ss_pred             CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 021783          241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  303 (307)
Q Consensus       241 ~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  303 (307)
                      +...++++.|...++..+|...+|..++.+.+...|..++.||+|+|+||.+.+++.|.++|+
T Consensus       301 ~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsvGlE~~~dli~dl~~al~  363 (364)
T PRK07269        301 KVFTFAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIGIEDARDLIADLKQALE  363 (364)
T ss_pred             CcceEccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHhc
Confidence            999999999999999999999999999998888999999999999999999999999999986

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=100.00  E-value=2.4e-40  Score=287.09  Aligned_cols=289  Identities=45%  Similarity=0.745  Sum_probs=257.1

Q ss_pred             CcHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         1 ~aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      |+|+.+++.++++||+|+++++.|++....+...++..|++++.++..|+++++++++++|++|++++|+||+|...+++
T Consensus        77 ~~ai~~~~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~  156 (366)
T PRK08247         77 MAAIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIA  156 (366)
T ss_pred             HHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHH
Confidence            45676666788999999999999998877777777889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhh
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  160 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (307)
                      +|.++|+++|+++|+|++|+.+....+...++|+++.|++|+++|++++++|+++.+++.+.+.+...+...+..+++..
T Consensus       157 ~I~~la~~~g~~lIvD~t~~~~~~~~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~  236 (366)
T PRK08247        157 AIAKIAKKHGLLLIVDNTFYTPVLQRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFD  236 (366)
T ss_pred             HHHHHHHHcCCEEEEECCCccccccCchhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHH
Confidence            99999999999999999998777666666789999999999999888889999998766676767666666777788889


Q ss_pred             HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcC
Q 021783          161 CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT  240 (307)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  240 (307)
                      +++...+++.+..+++++.++++.+.++|+.++.+..+.+|+                .+++++|.+++.+...++++.+
T Consensus       237 a~l~~~~l~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~----------------~gg~~sf~~~~~~~~~~~~~~l  300 (366)
T PRK08247        237 SWLLIRGMKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYPG----------------RGGMLSFRLQDEEWVNPFLKSL  300 (366)
T ss_pred             HHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCC----------------cCcEEEEEECCHHHHHHHHHcC
Confidence            999999999999999999999999999999998776666653                3789999988777778899999


Q ss_pred             CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       241 ~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      +...++++.|...++...|...+|..++.+.+...|..++.+|+|+|+|+.+.+++.|.++|+++
T Consensus       301 ~~~~~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGlE~~~dl~~dl~~al~~~  365 (366)
T PRK08247        301 KLITFAESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGIENVEDLIADLKQAFKQV  365 (366)
T ss_pred             CcceEccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhhc
Confidence            99899999999989899998888888998888889999999999999999999999999999864

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.8e-34  Score=247.70  Aligned_cols=267  Identities=27%  Similarity=0.344  Sum_probs=199.4

Q ss_pred             cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHH
Q 021783           11 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM   85 (307)
Q Consensus        11 ~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~   85 (307)
                      +++||+|++++.+|++...+|+.++++.|++++++|.+     ++++++..++++||+|.+++.+|.||.+.|+++|.++
T Consensus       108 ~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~l  187 (405)
T COG0520         108 LKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAEL  187 (405)
T ss_pred             hcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHH
Confidence            68999999999999999999999999999999999974     6899999999999999999999999999999999999


Q ss_pred             HHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH----------------
Q 021783           86 AHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL----------------  148 (307)
Q Consensus        86 ~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~----------------  148 (307)
                      ||++|+++++|++|+.|+.+ +..++|+|++++|.|||+.||.|  +|+++++++.+.+.....                
T Consensus       188 a~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP~G--iGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~  265 (405)
T COG0520         188 AHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTG--IGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVT  265 (405)
T ss_pred             HHHcCCEEEEECccccCccCCCchhcCCCEEEEcccccccCCCc--eEEEEEchHHHhhcCCcccCCCceeeeccccccc
Confidence            99999999999999999998 89999999999999998889999  999999988665542211                


Q ss_pred             -----HHhcCCCCChhhHHHHhhccccHH-HHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCce
Q 021783          149 -----QNAEGSGLAPFDCWICLRGVKTMA-LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV  222 (307)
Q Consensus       149 -----~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  222 (307)
                           ......++..........+++.+. ..++++.+..+.+.+++.          ..+.+.|++++..++...+.++
T Consensus       266 ~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~----------~~L~~~~~v~i~g~~~~~r~~~  335 (405)
T COG0520         266 LAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLL----------EGLSELPGVEIYGPPDADRGGI  335 (405)
T ss_pred             ccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHH----------HHHhcCCCeEEecCCcccCceE
Confidence                 011111122222222222332221 113334444444444332          2233344444443332346899


Q ss_pred             EEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHH
Q 021783          223 LSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  302 (307)
Q Consensus       223 ~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l  302 (307)
                      ++|.+++.. ..++...|..+||.++.|.+   |..|. ..          ..+ -++.+|+|++..+++++++.|.++|
T Consensus       336 vsF~v~~~~-~~dv~~~L~~~gI~vr~g~~---ca~p~-~~----------~~~-~~~~iR~S~~~YNt~edid~l~~aL  399 (405)
T COG0520         336 VSFNVKGIH-PHDVATLLDEKGIAVRAGHH---CAQPL-HR----------LLG-VDATIRASLHLYNTEEDVDRLLEAL  399 (405)
T ss_pred             EEEEeCCCC-HHHHHHHHHhCCeEEEeccc---cccHH-HH----------hcC-CCCceEEEEeecCCHHHHHHHHHHH
Confidence            999998875 88899999999999999998   44442 11          122 2444999999988888888888888


Q ss_pred             hcC
Q 021783          303 RTG  305 (307)
Q Consensus       303 ~~~  305 (307)
                      ++.
T Consensus       400 ~~~  402 (405)
T COG0520         400 KKA  402 (405)
T ss_pred             HHH
Confidence            754

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.98  E-value=1.5e-30  Score=226.32  Aligned_cols=261  Identities=21%  Similarity=0.197  Sum_probs=188.0

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC--------ChHHHHhhcCCCceEEEEeCCCCCc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--------DLDEVASAIGPWTKLVWVESPTNPR   73 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--------d~~~l~~~l~~~~~~v~~~~~~n~t   73 (307)
                      |+ .+++++++|||+|++++|.|+++.    ...+..|++++.++..        |+++++++++++||+|++++|||||
T Consensus       101 al~~~~~a~~~pGDeVlip~P~Y~~y~----~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPT  176 (393)
T COG0436         101 ALFLAFLALLNPGDEVLIPDPGYPSYE----AAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPT  176 (393)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCCcCHH----HHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCc
Confidence            55 566779999999999999999998    7788899999999851        6899999999999999999999999


Q ss_pred             ccccc---HHHHHHHHHHcCCEEEEeCccCCCCc-----C----CccCCCccEEEeccccccccCCCceeEEEEEcChhH
Q 021783           74 QQICD---IRKIAEMAHAHGALLLVDNSIMSPVL-----S----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        74 G~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~-----~----~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~  141 (307)
                      |.+++   +++|+++|++||+++|.|++|..-.+     .    ......+.+.+.|+||.+ +.+|.|+||++++++.+
T Consensus       177 Gav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~-~mtGwRvG~~v~~~~~l  255 (393)
T COG0436         177 GAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTY-GMTGWRIGWVVGPPEEL  255 (393)
T ss_pred             CcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccc-cccccceeEeecChHHH
Confidence            99996   89999999999999999999962211     1    111135789999999999 78999999999996667


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHhhccccH------HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhh
Q 021783          142 AKELYFLQNAEGSGLAPFDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ  215 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  215 (307)
                      .+.+...........+...+..+..+++.-      +...+...++++.+.+.+.+..++              .++.. 
T Consensus       256 ~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~--------------~~~~~-  320 (393)
T COG0436         256 IAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGL--------------SVVKP-  320 (393)
T ss_pred             HHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCe--------------eeccC-
Confidence            676666666666666666676666666422      222244566666677666655322              11110 


Q ss_pred             ccCCCceEEEEeCCHHHHHHHHhc-CCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChH
Q 021783          216 AKGAGSVLSFLTGSLALSKHVVET-TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVN  292 (307)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~  292 (307)
                      + ..+.+++..++...+..+|... +++.||.|.+|..|...                    .+++++|+|+..  ++++
T Consensus       321 p-~Ga~Y~~~~i~~~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~--------------------~g~~~vRis~~~~~~~l~  379 (393)
T COG0436         321 P-EGAFYLFPKIPELLDSEEFAKKLLEEAGVAVVPGSGFGEP--------------------PGEGYVRLSLATSEETLE  379 (393)
T ss_pred             C-CeeEEEEeecCCCCCHHHHHHHHHHhCCEEEecccccCCC--------------------CCCCeEEEEEecCHHHHH
Confidence            1 1234444555432224444444 45568999999874421                    247899999976  5666


Q ss_pred             HHHHHHHHHHhc
Q 021783          293 DLISDLDKALRT  304 (307)
Q Consensus       293 ~~i~~l~~~l~~  304 (307)
                      +.++++.+.++.
T Consensus       380 ~a~~rl~~~~~~  391 (393)
T COG0436         380 EALRRLARFLAE  391 (393)
T ss_pred             HHHHHHHHHHHh
Confidence            667777766654

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.97  E-value=1.2e-30  Score=218.58  Aligned_cols=265  Identities=22%  Similarity=0.205  Sum_probs=192.9

Q ss_pred             CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHH
Q 021783           12 GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA   86 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~   86 (307)
                      +.|.+|+++..+|+++...+..+ +..|.++.++|.+     |+++|+++++++|.+|.+.+.||.+|.+.|+++|.++|
T Consensus        89 ~~~~HIIts~iEH~aVl~~~~~L-e~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~  167 (386)
T COG1104          89 QKGKHIITSAIEHPAVLNTCRYL-ERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEIC  167 (386)
T ss_pred             cCCCeEEEcccccHHHHHHHHHH-HhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHH
Confidence            36889999999999999888776 7889999999986     89999999999999999999999999999999999999


Q ss_pred             HHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCC----CCChh-h
Q 021783           87 HAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS----GLAPF-D  160 (307)
Q Consensus        87 ~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~  160 (307)
                      +++++++++|++|+.|..+ +...+++|+++.|.||.. ||.|  +|+++.++......+.....+...    +.... .
T Consensus       168 k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~~-GpkG--iGaLyv~~~~~~~p~i~GGgQE~g~RsGTenv~~I  244 (386)
T COG1104         168 KERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFG-GPKG--IGALYVRPGVRLEPLIHGGGQERGLRSGTENVPGI  244 (386)
T ss_pred             HHcCCeEEEehhhhcCceeccccccCcceEEeehhhcc-CCCc--eEEEEECCCCccCceeccCcCCCCCCCCCccHHHH
Confidence            9999999999999999998 888889999999999988 8999  999999765433333322222211    11111 1


Q ss_pred             HHHHh---hccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHH
Q 021783          161 CWICL---RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVV  237 (307)
Q Consensus       161 ~~~~~---~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (307)
                      ..+..   -+.+.+....+++....+++.+.+....             |++.+........++++.|.+++.+ .+.++
T Consensus       245 vg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~-------------p~~~~~g~~~~rlP~~~~~~f~gv~-gE~ll  310 (386)
T COG1104         245 VGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEII-------------PDVYLNGDDEPRLPNILNFSFPGVE-GESLL  310 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CcEEEcCCcccCCCCeEEEEeCCCc-HHHHH
Confidence            11111   1122223333333444444555554331             2222221122335678899999887 99999


Q ss_pred             hcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCC----CeEEEEeccCChHHHHHHHHHHH
Q 021783          238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTE----DLVRISVGIEDVNDLISDLDKAL  302 (307)
Q Consensus       238 ~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~iRis~~~~~~~~~i~~l~~~l  302 (307)
                      ..|...||.++.|+.|+        .....+++++.++|.++    +.||+|++..+.++.++.+.+.+
T Consensus       311 ~~L~~~gI~vStGSACs--------S~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l  371 (386)
T COG1104         311 LALDLAGIAVSTGSACS--------SGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEAL  371 (386)
T ss_pred             HhccccCeEEecccccc--------CCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHH
Confidence            99999999999999833        22335788999999864    99999999855555554444443

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.97  E-value=4.5e-29  Score=220.57  Aligned_cols=260  Identities=17%  Similarity=0.163  Sum_probs=181.1

Q ss_pred             hcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHH
Q 021783           10 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE   84 (307)
Q Consensus        10 ~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~   84 (307)
                      .+++||+|++++++|++....|...++..|++++.++.+     |+++++++++++|++|++++++||||.+.|+++|.+
T Consensus       109 ~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~l~~~~n~tG~~~~~~~i~~  188 (406)
T PRK09295        109 NVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDERTRLLAITHVSNVLGTENPLAEMIA  188 (406)
T ss_pred             cCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcCCCcEEEEEecchhcccccCCHHHHHH
Confidence            468999999999999998888888888899999999863     789999999989999999999999999999999999


Q ss_pred             HHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH---------------
Q 021783           85 MAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL---------------  148 (307)
Q Consensus        85 ~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~---------------  148 (307)
                      +|+++|+++++|++|+.|..+ +...+++|++++|+||.+ ||+|  .|+++++++.........               
T Consensus       189 ~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~-gp~G--~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  265 (406)
T PRK09295        189 LAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLY-GPTG--IGILYVKEALLQEMPPWEGGGSMIATVSLTEGT  265 (406)
T ss_pred             HHHHcCCEEEEEcccccCccccCchhcCCCEEEeehhhcc-CCCC--cEEEEEchHhHhhCCCcccCCceeeeeecCCcc
Confidence            999999999999999988876 666789999999999966 7888  899999876433211100               


Q ss_pred             ------HHhcCCCCChhhHHHHhhccccHHH-HHHHHHH----HHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhcc
Q 021783          149 ------QNAEGSGLAPFDCWICLRGVKTMAL-RVEKQQD----NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  217 (307)
Q Consensus       149 ------~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~----~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~  217 (307)
                            .+...++.+......+..+++.+.. .++++.+    ..+.+.+.+++.+.              +++..+  .
T Consensus       266 ~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~--------------~~~~~~--~  329 (406)
T PRK09295        266 TWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPD--------------LTLYGP--Q  329 (406)
T ss_pred             ccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC--------------EEEeCC--C
Confidence                  0011112222222233333332221 1223333    33344444443332              222211  1


Q ss_pred             CCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHH
Q 021783          218 GAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD  297 (307)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~  297 (307)
                      ...+++.|.+++.. ..++.+.|..+||.++.|..+.   .+           .....+. ++++|+|++..+.+++++.
T Consensus       330 ~~~~iv~~~~~~~~-~~~~~~~L~~~gI~v~~g~~c~---~~-----------~~~~~~~-~~~iRiS~~~ynt~~did~  393 (406)
T PRK09295        330 NRLGVIAFNLGKHH-AYDVGSFLDNYGIAVRTGHHCA---MP-----------LMAYYNV-PAMCRASLAMYNTHEEVDR  393 (406)
T ss_pred             CCceEEEEEECCcC-HHHHHHHHHhCCeEEeccccch---HH-----------HHHHHCC-CCEEEEEccCCCCHHHHHH
Confidence            13578899887644 5567777888999999988632   11           1112232 4679999998777777777


Q ss_pred             HHHHHhc
Q 021783          298 LDKALRT  304 (307)
Q Consensus       298 l~~~l~~  304 (307)
                      |.++|++
T Consensus       394 l~~~l~~  400 (406)
T PRK09295        394 LVAGLQR  400 (406)
T ss_pred             HHHHHHH
Confidence            7777754

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.97  E-value=3.8e-28  Score=213.26  Aligned_cols=258  Identities=16%  Similarity=0.152  Sum_probs=177.5

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCcccccc-
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICD-   78 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~-   78 (307)
                      .++.+++++||+|++++|+|..+.    ..++..|++++.++.+     |++++++.++++++++++++|+||||.+++ 
T Consensus       104 ~~~~~~~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~~~~  179 (389)
T PRK05957        104 NAILAITDPGDEIILNTPYYFNHE----MAITMAGCQPILVPTDDNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPE  179 (389)
T ss_pred             HHHHHhcCCCCEEEEeCCCCcCHH----HHHHhcCCEEEEeecCCCCCcCHHHHHHhcCcCceEEEEeCCCCCCCcCcCH
Confidence            344557899999999999998876    4456789999998874     789999999889999999999999999997 


Q ss_pred             --HHHHHHHHHHcCCEEEEeCccCCCCc------C---CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH
Q 021783           79 --IRKIAEMAHAHGALLLVDNSIMSPVL------S---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  147 (307)
Q Consensus        79 --~~~l~~~~~~~~~~li~D~a~~~~~~------~---~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~  147 (307)
                        +++|+++|+++|+++|+|++|+....      .   .....+..+++.|+||.+ |.+|+|.||++++++ +.+.+..
T Consensus       180 ~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~-~~~~~~~  257 (389)
T PRK05957        180 ALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAY-GFASWRIGYMVIPIH-LLEAIKK  257 (389)
T ss_pred             HHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhc-cCccceeEEEecCHH-HHHHHHH
Confidence              88999999999999999999862211      1   112334679999999999 778999999999754 5555555


Q ss_pred             HHHhcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceE
Q 021783          148 LQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  223 (307)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  223 (307)
                      .........+...+..+...++.    +....+.+.++.+.+.+.|+..+.+..              +. + ...+.++
T Consensus       258 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~--------------~~-~-~~gg~~~  321 (389)
T PRK05957        258 IQDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQDRCT--------------LH-P-ANGAFYC  321 (389)
T ss_pred             HHhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--------------cc-C-CCeeEEE
Confidence            55443333444455554444432    333344455555556666654321100              00 1 1134566


Q ss_pred             EEEeCCHHHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc---CChHHHHHHHH
Q 021783          224 SFLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLD  299 (307)
Q Consensus       224 ~~~~~~~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~l~  299 (307)
                      ++++++..+..++.+.+. ..||.+.+|..|..                     ..++++|||++.   +++++.++.|.
T Consensus       322 ~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~---------------------~~~~~iRis~~~~~~~~l~~~~~~l~  380 (389)
T PRK05957        322 FLKVNTDLNDFELVKQLIREYRVAVIPGTTFGM---------------------KNGCYLRIAYGALQKATAKEGIERLV  380 (389)
T ss_pred             EEeCCCCCChHHHHHHHHHHCCEEEccchhhCC---------------------CCCCEEEEEEecCCHHHHHHHHHHHH
Confidence            777754334667777764 57999999886421                     024689999985   34566667776


Q ss_pred             HHHhcC
Q 021783          300 KALRTG  305 (307)
Q Consensus       300 ~~l~~~  305 (307)
                      +.++++
T Consensus       381 ~~~~~~  386 (389)
T PRK05957        381 QGLKTI  386 (389)
T ss_pred             HHHHhh
Confidence            666543

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.97  E-value=9.7e-29  Score=218.02  Aligned_cols=256  Identities=19%  Similarity=0.160  Sum_probs=172.4

Q ss_pred             cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHH
Q 021783           11 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM   85 (307)
Q Consensus        11 ~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~   85 (307)
                      +++||+|++++++|++....+...++..|++++.++.+     |++++++.++++|+++++++++||||.+.|+++|.++
T Consensus       103 ~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~~  182 (398)
T TIGR03392       103 LQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITL  182 (398)
T ss_pred             CCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhccCceEEEEECccccccccCCHHHHHHH
Confidence            48999999999999987777777788899999999863     7899999999999999999999999999999999999


Q ss_pred             HHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH----------------
Q 021783           86 AHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL----------------  148 (307)
Q Consensus        86 ~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~----------------  148 (307)
                      |+++|+++++|++|+.+..+ +...+++|++++|+||.+ ||+|  .|+++++++.+.......                
T Consensus       183 ~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~-gp~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (398)
T TIGR03392       183 AHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLY-GPTG--IGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIP  259 (398)
T ss_pred             HHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEeccccc-CCCc--eEEEEEcHHHHhhCCCeecCCceEeecccccccc
Confidence            99999999999999887765 556678999999999977 7888  899998866443221110                


Q ss_pred             ----HHhcCCCCChhhHHHHhhccccHH-----HHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCC
Q 021783          149 ----QNAEGSGLAPFDCWICLRGVKTMA-----LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  219 (307)
Q Consensus       149 ----~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (307)
                          .+...++...........+++.+.     ...+...+..+.+.+.++..+.+              ++...+   .
T Consensus       260 ~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~--------------~~~~~~---~  322 (398)
T TIGR03392       260 QAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGF--------------RSFRCP---G  322 (398)
T ss_pred             CCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCe--------------EEeCCC---C
Confidence                001111122112222223333221     11222233334444444433322              111111   2


Q ss_pred             CceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHH
Q 021783          220 GSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD  299 (307)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~  299 (307)
                      +++++|.+++.+ ...+.+.|..+||.++.|..++.   +           .....|. ++++|+|++..++++.++.|.
T Consensus       323 ~~i~~~~~~~~~-~~~l~~~L~~~gI~v~~g~~~~~---~-----------~~~~~g~-~~~iRvS~~~~~t~~ei~~l~  386 (398)
T TIGR03392       323 SSLLAFDFAGVH-HSDLAALLAESGIALRAGQHCAQ---P-----------LMAALGV-SGTLRASFAPYNTQQDVDALV  386 (398)
T ss_pred             CcEEEEEeCCcC-HHHHHHHHHhCCEEEecCccchH---H-----------HHHHhCC-CCEEEEEeeccCCHHHHHHHH
Confidence            568888887654 56788888889999999886331   1           1112222 468999998744444444444


Q ss_pred             HHH
Q 021783          300 KAL  302 (307)
Q Consensus       300 ~~l  302 (307)
                      ++|
T Consensus       387 ~~l  389 (398)
T TIGR03392       387 DAV  389 (398)
T ss_pred             HHH
Confidence            444

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.97  E-value=3.1e-28  Score=214.97  Aligned_cols=256  Identities=20%  Similarity=0.179  Sum_probs=173.7

Q ss_pred             cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHH
Q 021783           11 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM   85 (307)
Q Consensus        11 ~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~   85 (307)
                      +++||+|++++++|++....|...++..|++++.++.+     |++++++.++++|+++++++++||||.+.|+++|.++
T Consensus       106 ~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~l  185 (401)
T PRK10874        106 LQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAITL  185 (401)
T ss_pred             CCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCcCcEEEEEeCCcccccCcCCHHHHHHH
Confidence            47999999999999988777878888999999999863     7899999999999999999999999999999999999


Q ss_pred             HHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH----------------
Q 021783           86 AHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL----------------  148 (307)
Q Consensus        86 ~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~----------------  148 (307)
                      |+++|+++++|++|+.+..+ +...+++|++++|+||++ ||+|  .|+++++++.+.......                
T Consensus       186 ~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~-gp~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (401)
T PRK10874        186 AHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLY-GPTG--IGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTP  262 (401)
T ss_pred             HHHcCCEEEEECCcccccccCCchhcCCCEEEEeccccc-CCCc--cEEEEEchHHHhcCCCeecCCcceEeeccCccCC
Confidence            99999999999999987765 556678999999999977 7888  799999866443211110                


Q ss_pred             ----HHhcCCCCChhhHHHHhhccccHHH-----HHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCC
Q 021783          149 ----QNAEGSGLAPFDCWICLRGVKTMAL-----RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  219 (307)
Q Consensus       149 ----~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (307)
                          .....++.+.........+++.+..     ..++..+..+.+.+.+++.+++              ++..+   ..
T Consensus       263 ~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~--------------~~~~~---~~  325 (401)
T PRK10874        263 QSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGF--------------RSFRC---QD  325 (401)
T ss_pred             CCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE--------------EEeCC---CC
Confidence                0011111221222233333332211     1222233344444444443322              11111   12


Q ss_pred             CceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHH
Q 021783          220 GSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD  299 (307)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~  299 (307)
                      +++++|.+++.. ..++.+.|..+||.++.|..++.   +           .....| ..+++|+|++..+.++.++.|.
T Consensus       326 ~~i~~~~~~~~~-~~~~~~~L~~~gI~v~~g~~~~~---~-----------~~~~~g-~~~~iRiS~~~~nt~edid~ll  389 (401)
T PRK10874        326 SSLLAFDFAGVH-HSDLVTLLAEYGIALRAGQHCAQ---P-----------LLAALG-VTGTLRASFAPYNTQSDVDALV  389 (401)
T ss_pred             CcEEEEEECCcC-HHHHHHHHHHCCcEEeccccchH---H-----------HHHHhC-CCCEEEEEecccCCHHHHHHHH
Confidence            568888887654 56777888889999998876321   1           111223 2478999999644444444444


Q ss_pred             HHH
Q 021783          300 KAL  302 (307)
Q Consensus       300 ~~l  302 (307)
                      ++|
T Consensus       390 ~al  392 (401)
T PRK10874        390 NAV  392 (401)
T ss_pred             HHH
Confidence            444

>PRK07324 transaminase; Validated

Probab=99.96  E-value=5.4e-28  Score=210.94  Aligned_cols=254  Identities=20%  Similarity=0.188  Sum_probs=175.5

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~   77 (307)
                      .++.+++++||+|+++.|+|+.+.    ..++..|++++.++.+       |++++++.++++++++++++|+||||.++
T Consensus        95 ~~~~~l~~~gd~Vl~~~P~y~~~~----~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~  170 (373)
T PRK07324         95 LVLYALVEPGDHVISVYPTYQQLY----DIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALM  170 (373)
T ss_pred             HHHHHhCCCCCEEEEcCCCchhHH----HHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCC
Confidence            455567899999999999998877    6677889999999863       68899998888999999999999999999


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCccCCCCc----CC-ccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           78 D---IRKIAEMAHAHGALLLVDNSIMSPVL----SR-PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        78 ~---~~~l~~~~~~~~~~li~D~a~~~~~~----~~-~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                      +   +++|+++|++||+++|+|++|..-..    +. ....+..++++|+||.+ |.+|+|+||++++ +.+.+.+....
T Consensus       171 ~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~-~~~G~RiG~i~~~-~~li~~~~~~~  248 (373)
T PRK07324        171 DRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTY-SLPGIRVGWIAAN-EEVIDILRKYR  248 (373)
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEEEecchhhc-CCccceeEEEecC-HHHHHHHHHHh
Confidence            8   88999999999999999999863221    11 11234679999999999 6789999999996 55656566555


Q ss_pred             HhcCCCCChhhHHHHhhccccHH----HHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEE
Q 021783          150 NAEGSGLAPFDCWICLRGVKTMA----LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  225 (307)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  225 (307)
                      .......+...+.++...++...    ...+...++.+.+.+.+++++.+. ..               .+. .+..+++
T Consensus       249 ~~~~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~-~~---------------~p~-gg~~~~i  311 (373)
T PRK07324        249 DYTMICAGVFDDMLASLALEHRDAILERNRKIVRTNLAILDEWVAKEPRVS-YV---------------KPK-AVSTSFV  311 (373)
T ss_pred             CcEEecCChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCce-EE---------------CCC-ceEEEEE
Confidence            54433444455555555554322    222333445555556565443221 11               111 2344455


Q ss_pred             EeCCHHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHH
Q 021783          226 LTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKAL  302 (307)
Q Consensus       226 ~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l  302 (307)
                      .++......++.+++ ++.||.+.+|..|.                       .++++|||++.  +.+++.+++|.+.+
T Consensus       312 ~~~~~~~~~~~~~~ll~~~gv~v~pg~~F~-----------------------~~~~iRis~~~~~~~l~~~l~rl~~~l  368 (373)
T PRK07324        312 KLDVDMPSEDFCLKLLKETGVLLVPGNRFD-----------------------LEGHVRIGYCCDTETLKKGLKKLSEFL  368 (373)
T ss_pred             EeCCCCCHHHHHHHHHHhcCEEEECccccC-----------------------CCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence            554322356676665 56799999988642                       14579999985  55666677777776


Q ss_pred             hc
Q 021783          303 RT  304 (307)
Q Consensus       303 ~~  304 (307)
                      ++
T Consensus       369 ~~  370 (373)
T PRK07324        369 RE  370 (373)
T ss_pred             Hh
Confidence            54

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.96  E-value=6.1e-28  Score=212.76  Aligned_cols=259  Identities=18%  Similarity=0.153  Sum_probs=178.5

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----------ChHHHHhhcCCCceEEEEeCCCC
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----------DLDEVASAIGPWTKLVWVESPTN   71 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----------d~~~l~~~l~~~~~~v~~~~~~n   71 (307)
                      ++ .++.+++++||+|++++|+|+.+.    ..++..|++++.++.+          |+++++++++++++++++++|+|
T Consensus       114 al~~~~~~l~~~Gd~Vlv~~P~y~~~~----~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~N  189 (405)
T PRK06207        114 ALFLAVAATVARGDKVAIVQPDYFANR----KLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNPNN  189 (405)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCchhHH----HHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEECCCCC
Confidence            44 345567899999999999998877    6677889999888753          78899999888899999999999


Q ss_pred             Ccccccc---HHHHHHHHHHcCCEEEEeCccCCCCc-----CCc----cCCCccEEEeccccccccCCCceeEEEEEcCh
Q 021783           72 PRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL-----SRP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        72 ~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~-----~~~----~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      |||.+++   +++|+++|++||++||+|++|+...+     ...    ...+..++++||||.+ +.+|+|+||++++++
T Consensus       190 PTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~lpGlRiG~ii~~~~  268 (405)
T PRK06207        190 PAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTE-SLSGYRLGVAFGSPA  268 (405)
T ss_pred             CCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhc-cCcccceEEEEcCHH
Confidence            9999997   78899999999999999999974221     111    1235679999999999 667999999998754


Q ss_pred             hHHHHHHHHHHhcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhh
Q 021783          140 RLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ  215 (307)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  215 (307)
                       +.+.+...........+...+..+...++.    +..+.+...++.+.+.+.+++.+.+              .+.  .
T Consensus       269 -l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~--------------~~~--~  331 (405)
T PRK06207        269 -IIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLRGVEGV--------------FVR--A  331 (405)
T ss_pred             -HHHHHHHHHhHhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCc--------------eec--C
Confidence             555555544443333333444444444422    3344445555555565555543211              110  1


Q ss_pred             ccCCCceEEEEeCCH-HHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CCh
Q 021783          216 AKGAGSVLSFLTGSL-ALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDV  291 (307)
Q Consensus       216 ~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~  291 (307)
                       ...+.++|+.++.. ....++.+.+. ..||.+.+|..|..                     ..++++|||++.  +++
T Consensus       332 -p~gg~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~---------------------~~~~~~Ris~~~~~~~l  389 (405)
T PRK06207        332 -PQAGSYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFSP---------------------HTADSIRLNFSQDHAAA  389 (405)
T ss_pred             -CCeeEEEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhCC---------------------CCCCeEEEEecCCHHHH
Confidence             11356777777542 23567777775 67999999876421                     125689999986  556


Q ss_pred             HHHHHHHHHHHhcC
Q 021783          292 NDLISDLDKALRTG  305 (307)
Q Consensus       292 ~~~i~~l~~~l~~~  305 (307)
                      ++.+++|.+++++.
T Consensus       390 ~~al~rl~~~l~~~  403 (405)
T PRK06207        390 VAAAERIAQLIERY  403 (405)
T ss_pred             HHHHHHHHHHHHHh
Confidence            66677777776553

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.96  E-value=1.4e-28  Score=218.58  Aligned_cols=261  Identities=21%  Similarity=0.228  Sum_probs=177.1

Q ss_pred             hcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHH
Q 021783           10 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE   84 (307)
Q Consensus        10 ~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~   84 (307)
                      .+++||+|++++++|++....|...++..|++++.++.+     |++++++.+++++++|++++++||||.+.|+++|.+
T Consensus       118 ~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~I~~  197 (424)
T PLN02855        118 NLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVH  197 (424)
T ss_pred             cCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhccCceEEEEeCccccccccCCHHHHHH
Confidence            368999999999999988888888888899999999863     789999999989999999999999999999999999


Q ss_pred             HHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH---------------
Q 021783           85 MAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL---------------  148 (307)
Q Consensus        85 ~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~---------------  148 (307)
                      +|+++|+++++|++|+.|..+ +..++++|++++|+||++ ||+|  .|+++++++.+.......               
T Consensus       198 l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~-gp~G--~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~  274 (424)
T PLN02855        198 WAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMC-GPTG--IGFLWGKSDLLESMPPFLGGGEMISDVFLDHST  274 (424)
T ss_pred             HHHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeeccccc-CCCc--cEEEEEchhhhhcCCCEecCCCceeeeecCccc
Confidence            999999999999999988766 666778999999999965 7888  899999866443211110               


Q ss_pred             -----HHhcCCCCChhhHHHHhhccccHHH-HHHHHHH----HHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhh---
Q 021783          149 -----QNAEGSGLAPFDCWICLRGVKTMAL-RVEKQQD----NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ---  215 (307)
Q Consensus       149 -----~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~----~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~---  215 (307)
                           .+...++...........+++.+.. .++++.+    ..+.+.+.+++.+++              ++..+.   
T Consensus       275 ~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~--------------~i~~~~~~~  340 (424)
T PLN02855        275 YAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGV--------------RIYGPKPSE  340 (424)
T ss_pred             cCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE--------------EEeCCCccc
Confidence                 0011111111122222222332211 2233333    333444444443322              221111   


Q ss_pred             ccCCCceEEEEeCCHHHHHHHHhcCCcc-eeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHH
Q 021783          216 AKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL  294 (307)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~  294 (307)
                      +..+++++.|.+++.+ ..++.+.|..+ ||.++.|.+++   .|.           ....|. ++++|+|++..+.++.
T Consensus       341 ~~~r~~~v~~~~~~~~-~~~v~~~L~~~~gI~v~~g~~c~---~~~-----------~~~~g~-~~~iRiS~~~ynt~~d  404 (424)
T PLN02855        341 GVGRAALCAFNVEGIH-PTDLSTFLDQQHGVAIRSGHHCA---QPL-----------HRYLGV-NASARASLYFYNTKEE  404 (424)
T ss_pred             ccCcccEEEEEECCcC-HHHHHHHhcccCCEEEechhhhh---HHH-----------HHHhCC-CCeEEEEeccCCCHHH
Confidence            1124678899887654 66788888777 99999988733   111           011232 4679999987555555


Q ss_pred             HHHHHHHHh
Q 021783          295 ISDLDKALR  303 (307)
Q Consensus       295 i~~l~~~l~  303 (307)
                      ++.|.++|+
T Consensus       405 i~~l~~~l~  413 (424)
T PLN02855        405 VDAFIHALK  413 (424)
T ss_pred             HHHHHHHHH
Confidence            555555443

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.96  E-value=1e-27  Score=211.32  Aligned_cols=253  Identities=13%  Similarity=0.102  Sum_probs=173.0

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++++||+|++++|+|+.+.    ..++..|++++.++.+       |++++++.+.++++++++++|+||||
T Consensus       105 al~~~~~~~~~~Gd~Vlv~~P~y~~~~----~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG  180 (399)
T PRK07681        105 GLVHLPMVYANPGDIILVPDPGYTAYE----TGIQMAGATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPVP  180 (399)
T ss_pred             HHHHHHHHhCCCCCEEEECCCCccchH----HHHHhcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCcC
Confidence            44 344567899999999999999888    6677899999999863       67889888888899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCc-----CC---cc-CCCccEEEeccccccccCCCceeEEEEEcChhHH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVL-----SR---PL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  142 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~-----~~---~~-~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~  142 (307)
                      .+++   +++|+++|++||++||+|++|+....     ..   .. ..+..++++||||.+ |.+|+|+||++++++ +.
T Consensus       181 ~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlRiG~~i~~~~-l~  258 (399)
T PRK07681        181 AMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSY-SLAGSRIGYMIGNEE-IV  258 (399)
T ss_pred             cCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeeccccc-CCccceeEEEecCHH-HH
Confidence            9997   78899999999999999999973221     11   11 224679999999999 678999999998754 55


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          143 KELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      +.+...........+...+..+...++.    ++...+.+.++.+.+.+.|+... + .+.               . ..
T Consensus       259 ~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-~~~---------------~-p~  320 (399)
T PRK07681        259 RALTQFKSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTFG-W-NVD---------------K-PA  320 (399)
T ss_pred             HHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCC-C-ccc---------------C-CC
Confidence            5555554433334444444544444432    23333344555555666665431 1 000               0 11


Q ss_pred             CCceEEEEeCCHHHHHHHHhcCCc-ceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHH
Q 021783          219 AGSVLSFLTGSLALSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLI  295 (307)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i  295 (307)
                      .+.++++.+++.....++.+.+.. +||.+.+|..|..                     ..++++|||++.  +++++.+
T Consensus       321 ~g~f~~~~l~~~~~~~~~~~~l~~~~gv~v~pg~~f~~---------------------~~~~~iRis~~~~~~~~~~~l  379 (399)
T PRK07681        321 GSMFVWAEIPKGWTSLSFAYALMDRANVVVTPGHAFGP---------------------HGEGFVRIALVQDEEVLQQAV  379 (399)
T ss_pred             eeeEEEEECCCCCCHHHHHHHHHHhCCEEEeCChhhCc---------------------CCCCeEEEEecCCHHHHHHHH
Confidence            366777777543335677777655 7999998876321                     124689999985  3444455


Q ss_pred             HHHHH
Q 021783          296 SDLDK  300 (307)
Q Consensus       296 ~~l~~  300 (307)
                      +.|.+
T Consensus       380 ~~l~~  384 (399)
T PRK07681        380 ENIRN  384 (399)
T ss_pred             HHHHH
Confidence            55544

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.96  E-value=4.9e-28  Score=207.00  Aligned_cols=253  Identities=20%  Similarity=0.236  Sum_probs=186.9

Q ss_pred             HHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC----CChHHHHhhcCCCceEEEEeCCCCCccccccHHH
Q 021783            6 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRK   81 (307)
Q Consensus         6 ~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~----~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~   81 (307)
                      ++.+++.+||+|+++.|+|..+.    ..++..|++++.++.    .|++.+.+.+.+++++|++|+||||||...+.++
T Consensus        91 l~~~~~~~gd~vl~~~Ptf~~Y~----~~a~~~g~~~~~v~~~~~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~  166 (356)
T COG0079          91 LVRAFVEPGDTVLIPEPTFSMYE----IAAQLAGAEVVKVPLKEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREE  166 (356)
T ss_pred             HHHHhhcCCCEEEEcCCChHHHH----HHHHhcCCeEEEecccccccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHH
Confidence            44567899999999999998887    668889999999998    4788898888889999999999999999999888


Q ss_pred             HHHHHHHc--CCEEEEeCccCCCCcC----CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH-HhcCC
Q 021783           82 IAEMAHAH--GALLLVDNSIMSPVLS----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NAEGS  154 (307)
Q Consensus        82 l~~~~~~~--~~~li~D~a~~~~~~~----~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~-~~~~~  154 (307)
                      |.+++...  +.+||+||||.....+    .....++.+++.||||.| |.+|+|+||.+.+++ +.+.+.... ++..+
T Consensus       167 l~~l~~~~~~~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTfSKa~-gLAGlRlGy~ia~~~-~i~~l~~vr~p~~v~  244 (356)
T COG0079         167 LRALLEALPEGGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTFSKAF-GLAGLRVGYAIANPE-LIAALNKVRPPFNVS  244 (356)
T ss_pred             HHHHHHhCCCCcEEEEeCchhhcCCchhhhhccCCCCEEEEEecHHhh-hcchhceeeccCCHH-HHHHHHHhcCCCCCC
Confidence            88888765  7899999999743322    112345689999999999 789999999887755 545454444 33333


Q ss_pred             CCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHH
Q 021783          155 GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSK  234 (307)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (307)
                      .+....+..++..-+.++...+...+...++.+.++... +..+ +                .+..+++.+++++.+ ..
T Consensus       245 ~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~-~~~v-~----------------pS~aNFvlv~~~~~~-~~  305 (356)
T COG0079         245 SPALAAAIAALRDADYLEESVERIREERERLYAALKALG-LFGV-F----------------PSQANFVLVRVPDAE-AA  305 (356)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCC-CCee-c----------------CCCCcEEEEECCCcc-HH
Confidence            333322222222224456667777777888888887654 2111 1                123678888887645 67


Q ss_pred             HHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHhcC
Q 021783          235 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALRTG  305 (307)
Q Consensus       235 ~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~~~  305 (307)
                      .+.+.|..+||.++....                      .+..++++|||++. ++.+++++.|.+.+...
T Consensus       306 ~l~~~L~~~giivR~~~~----------------------~~~~~~~lRitvgt~een~~ll~AL~~~~~~~  355 (356)
T COG0079         306 ALAEALLKKGILVRDCSS----------------------VGLLPGYLRITVGTPEENDRLLAALREVLKGL  355 (356)
T ss_pred             HHHHHHHHCCEEEEeCCC----------------------CCCCCCeEEEEeCCHHHHHHHHHHHHHHHhcc
Confidence            888889888999986432                      12347789999986 67799999999887653

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.96  E-value=1.4e-27  Score=209.46  Aligned_cols=265  Identities=16%  Similarity=0.108  Sum_probs=175.6

Q ss_pred             CC-CCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHH
Q 021783           12 GT-GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM   85 (307)
Q Consensus        12 ~~-gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~   85 (307)
                      ++ +|+|+++..+|+++...+. .++..|++++.++.+     |++++++.++++++++++++++||||.+.|+++|.++
T Consensus        87 ~~~~~~vi~~~~e~ps~~~~~~-~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~l  165 (382)
T TIGR03403        87 KGGKNHIITTEVEHPAVRATCA-FLESLGVEVTYLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEI  165 (382)
T ss_pred             cCCCCEEEEcCCccHHHHHHHH-HHHHCCCEEEEEecCCCCCCCHHHHHHhcccCCeEEEEEcccCCCccccCHHHHHHH
Confidence            45 5789999999988887764 346789999999874     7899999999899999999999999999999999999


Q ss_pred             HHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH-HHH---HhcCCCCChhh
Q 021783           86 AHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY-FLQ---NAEGSGLAPFD  160 (307)
Q Consensus        86 ~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~  160 (307)
                      |+++|+++++|++|+.|..+ +..++++|++++|+||++ ||+|  .|++++++........ ...   .....++....
T Consensus       166 a~~~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~-gp~G--~g~l~vr~~~~~~p~~~g~~~~~~~~~gt~~~~~  242 (382)
T TIGR03403       166 CKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFH-GPKG--VGGLYIRKGVELTPLFHGGEHMGGRRSGTLNVPY  242 (382)
T ss_pred             HHHcCCEEEEechhhcCCCccCccccCCCEEEEcchhhC-CCCc--eEEEEECCCCCCCCcccCCCCCCCcccCCcChHH
Confidence            99999999999999988776 667789999999999987 7888  8999888653211100 000   00111222222


Q ss_pred             HHHHhhccccHHHHH----HHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHH
Q 021783          161 CWICLRGVKTMALRV----EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHV  236 (307)
Q Consensus       161 ~~~~~~~l~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (307)
                      ...+..+++......    ++.....+.+.+.+++.+.+              ++..+.....++++.|.+++.+ ...+
T Consensus       243 ~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~-~~~~  307 (382)
T TIGR03403       243 IVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLELPDV--------------FVVGDREHRVPNTILISIKGVE-GEAM  307 (382)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCE--------------EEECCCCCCcCCEEEEEeCCCC-HHHH
Confidence            222223333222222    23333344444444433322              2221111112457777787655 6677


Q ss_pred             HhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCC----CCeEEEEeccCChHHHHHHHHHHHh
Q 021783          237 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRISVGIEDVNDLISDLDKALR  303 (307)
Q Consensus       237 ~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~iRis~~~~~~~~~i~~l~~~l~  303 (307)
                      ...|..+||.++.|+.++..        ...++.++.+.|.+    .+.+|+|++..++++.++.|.++|+
T Consensus       308 ~~~L~~~gI~v~~g~~c~~~--------~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~  370 (382)
T TIGR03403       308 LWDLNKAGIAASTGSACASE--------DLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFK  370 (382)
T ss_pred             HHhhccCCEEEEchhccCCC--------CCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHH
Confidence            77788999999998764311        11134455666653    3789999998555555555555543

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.96  E-value=3.1e-27  Score=210.24  Aligned_cols=254  Identities=16%  Similarity=0.145  Sum_probs=176.9

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcCCCceEEEEe-CCCCCcccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPWTKLVWVE-SPTNPRQQI   76 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~~~~~~v~~~-~~~n~tG~~   76 (307)
                      |+ .++.++++|||+|++++|+|+.+.    ..++..|++++.++.+    |++++++++++++++++++ +||||||.+
T Consensus       153 al~~~~~~l~~pgd~Vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~g~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~  228 (431)
T PRK15481        153 AIERLLCAHLLPGDSVAVEDPCFLSSI----NMLRYAGFSASPVSVDAEGMQPEKLERALAQGARAVILTPRAHNPTGCS  228 (431)
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCcHHHH----HHHHHcCCeEEeeccCCCCCCHHHHHHHHhcCCCEEEECCCCCCCCCcc
Confidence            45 345567899999999999998888    6678899999999874    6899999888788988887 999999999


Q ss_pred             ccH---HHHHHHHHHc-CCEEEEeCccCCCC----cC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH
Q 021783           77 CDI---RKIAEMAHAH-GALLLVDNSIMSPV----LS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  147 (307)
Q Consensus        77 ~~~---~~l~~~~~~~-~~~li~D~a~~~~~----~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~  147 (307)
                      ++.   ++|.++|+++ +++||+|++|+.-.    .. .....+..++++||||.+ + +|+|+||++.+++ +.+.+..
T Consensus       229 ~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~-~GlRiG~~i~~~~-~~~~~~~  305 (431)
T PRK15481        229 LSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRWALIRSVSKAL-G-PDLRLAFVASDSA-TSARLRL  305 (431)
T ss_pred             CCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCEEEEeeecccc-C-CCceeEEEeCCHH-HHHHHHH
Confidence            985   4999999999 99999999996321    11 111235789999999999 5 6999999998755 4444443


Q ss_pred             HHHhcCCCCChhhHHHHhhcccc------HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCc
Q 021783          148 LQNAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS  221 (307)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (307)
                      .........+...+.++...++.      +....+.+.++.+.+.+.|+...         +.       + .. ...+.
T Consensus       306 ~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~~---------~~-------~-~~-p~gg~  367 (431)
T PRK15481        306 RLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQYG---------IA-------I-PS-PGDGL  367 (431)
T ss_pred             HHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHcC---------Cc-------c-cc-CCCeE
Confidence            33333233455555555555532      22233444555555666665431         10       0 01 22467


Q ss_pred             eEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc---CChHHHHHHH
Q 021783          222 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDL  298 (307)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~l  298 (307)
                      ++|+.++.  ....+.+.+..+||.+.+|..|...                    ...+++|||++.   +++++.++.|
T Consensus       368 f~~~~l~~--~~~~~~~~l~~~gV~v~pg~~f~~~--------------------~~~~~iRis~~~~~~~~i~~~~~~l  425 (431)
T PRK15481        368 NLWLPLDT--DSQATALTLAKSGWLVREGEAFGVS--------------------APSHGLRITLSTLNDAEINRLAADL  425 (431)
T ss_pred             EEEEECCC--CHHHHHHHHHHCCcEEecCCccccC--------------------CCCCeEEEEcCCCChHHHHHHHHHH
Confidence            77887753  2456777777789999998874310                    013579999986   5777777777


Q ss_pred             HHHHh
Q 021783          299 DKALR  303 (307)
Q Consensus       299 ~~~l~  303 (307)
                      .+++.
T Consensus       426 ~~~~~  430 (431)
T PRK15481        426 HQALN  430 (431)
T ss_pred             HHHhc
Confidence            77764

>PLN00175 aminotransferase family protein; Provisional

Probab=99.96  E-value=3.4e-27  Score=208.26  Aligned_cols=259  Identities=15%  Similarity=0.149  Sum_probs=177.9

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG~   75 (307)
                      |+ .++.++++|||+|++++|.|+.+.    ..++..|++++.++.+      |++++++.+.++++++++++|+||||.
T Consensus       127 al~~~~~~l~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~p~NPtG~  202 (413)
T PLN00175        127 AIAATILGLINPGDEVILFAPFYDSYE----ATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINTPHNPTGK  202 (413)
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCchhHH----HHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecCCCCCCCc
Confidence            44 455567899999999999998877    5567789999999863      678999999889999999999999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-------Cc-cCCCccEEEeccccccccCCCceeEEEEEcChhHHHH
Q 021783           76 ICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-------RP-LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  144 (307)
Q Consensus        76 ~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-------~~-~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~  144 (307)
                      +++   +++|+++|++||+++|+|++|....+.       .. ...+..++++||||.+ +.+|+|+||++++++ +.+.
T Consensus       203 ~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~-~~~G~RiG~~v~~~~-l~~~  280 (413)
T PLN00175        203 MFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTF-SLTGWKIGWAIAPPH-LTWG  280 (413)
T ss_pred             CCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhc-cCcchheeeeEeCHH-HHHH
Confidence            985   778999999999999999999743221       11 1235789999999999 678999999999865 4444


Q ss_pred             HHHHHHhcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCC
Q 021783          145 LYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG  220 (307)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  220 (307)
                      +...........+...+..+...++.    +....+.+.++.+.+.+.|+... + .+             .  .+ ..+
T Consensus       281 l~~~~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-~~-------------~--~p-~g~  342 (413)
T PLN00175        281 VRQAHSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKEVG-F-KV-------------Y--PS-SGT  342 (413)
T ss_pred             HHHHHhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC-C-ee-------------c--CC-Cee
Confidence            55555444444555555555555532    23334455556666666666431 1 00             0  11 124


Q ss_pred             ceEEEEeC--CHHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHH
Q 021783          221 SVLSFLTG--SLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLI  295 (307)
Q Consensus       221 ~~~~~~~~--~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i  295 (307)
                      .++++++.  +.+...++.+.+ +.+||.+.+|..|...                  .+..++++||+++.  +++++.+
T Consensus       343 ~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~------------------~~~~~~~iRls~~~~~e~l~~~~  404 (413)
T PLN00175        343 YFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLN------------------PEDGKNLVRFAFCKDEETLRAAV  404 (413)
T ss_pred             EEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCC------------------CCCCCCEEEEEEcCCHHHHHHHH
Confidence            45666653  222356676766 4569999888764210                  01135789999985  4566666


Q ss_pred             HHHHHHHh
Q 021783          296 SDLDKALR  303 (307)
Q Consensus       296 ~~l~~~l~  303 (307)
                      ++|.+.++
T Consensus       405 ~rL~~~~~  412 (413)
T PLN00175        405 ERMKTKLK  412 (413)
T ss_pred             HHHHHHHh
Confidence            66666654

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.96  E-value=1.8e-27  Score=210.44  Aligned_cols=260  Identities=23%  Similarity=0.236  Sum_probs=177.4

Q ss_pred             cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHH
Q 021783           11 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM   85 (307)
Q Consensus        11 ~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~   85 (307)
                      +++||+|++++++|++....+..+++..|++++.++.+     |++++++.++++++++++++++|+||.+.|+++|.++
T Consensus       105 ~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~lv~~~~~~~~tG~~~~~~~i~~~  184 (403)
T TIGR01979       105 LKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKL  184 (403)
T ss_pred             CCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhccCCeEEEEEcccccccccCCHHHHHHH
Confidence            57899999999999988877877888899999999863     7899999999999999999999999999999999999


Q ss_pred             HHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH---------------
Q 021783           86 AHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ---------------  149 (307)
Q Consensus        86 ~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~---------------  149 (307)
                      |+++|+++++|++|+.+..+ +...+++|++++|+||++ ||+|  .|+++++++.... +....               
T Consensus       185 ~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~-gp~G--~g~l~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~  260 (403)
T TIGR01979       185 AHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMY-GPTG--IGVLYGKEELLEQ-MPPFLGGGEMIAEVSFEETT  260 (403)
T ss_pred             HHHcCCEEEEEchhhcCccccCccccCCCEEEEeccccc-CCCC--ceEEEEchHHHhc-CCCeecCCCceeecccCccc
Confidence            99999999999999988765 666678999999999987 7888  8999998653322 21000               


Q ss_pred             ------HhcCCCCChhhHHHHhhccccHH-----HHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhh-hcc
Q 021783          150 ------NAEGSGLAPFDCWICLRGVKTMA-----LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS-QAK  217 (307)
Q Consensus       150 ------~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~  217 (307)
                            +...++.+......+..+++.+.     ...++..+..+.+.+.++..+.+              ++..+ .+.
T Consensus       261 ~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~--------------~~~~~~~~~  326 (403)
T TIGR01979       261 YNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGL--------------RIYGPRDAE  326 (403)
T ss_pred             cCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE--------------EEeCCCCcc
Confidence                  00111122222222233333221     22233344444444445443322              11111 111


Q ss_pred             CCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHH
Q 021783          218 GAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVND  293 (307)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~  293 (307)
                      ..++++.|.+++.+ ..++.+.|.+.||.++.|.+++   .|           .....+ .++++|+|++.    +|+++
T Consensus       327 ~~~~~v~~~~~~~~-~~~~~~~L~~~gI~v~~g~~~~---~~-----------~~~~~~-~~~~iRiS~~~~~t~~di~~  390 (403)
T TIGR01979       327 DRGGIISFNVEGVH-PHDVGTILDEEGIAVRSGHHCA---QP-----------LMRRFG-VPATCRASFYIYNTEEDIDA  390 (403)
T ss_pred             ccCceEEEEeCCcC-HHHHHHHHhhCCEEEcchhhhh---HH-----------HHHHhC-CCCEEEEEeccCCCHHHHHH
Confidence            24678888886544 5677888888999999887522   11           111122 24689999986    45666


Q ss_pred             HHHHHHHHHhc
Q 021783          294 LISDLDKALRT  304 (307)
Q Consensus       294 ~i~~l~~~l~~  304 (307)
                      +++.|++.++.
T Consensus       391 l~~~l~~~~~~  401 (403)
T TIGR01979       391 LVEALKKVRKF  401 (403)
T ss_pred             HHHHHHHHHHH
Confidence            66666555544

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.96  E-value=2.3e-27  Score=208.42  Aligned_cols=254  Identities=20%  Similarity=0.208  Sum_probs=170.3

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC--------ChHHHHhhcCCCceEEEEeCCCCCcccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--------DLDEVASAIGPWTKLVWVESPTNPRQQI   76 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--------d~~~l~~~l~~~~~~v~~~~~~n~tG~~   76 (307)
                      .++..++++||+|++++|+|+.+.    ..++..|++++.++.+        |++++++.++++++++++++|+||||..
T Consensus        99 ~~~~~l~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~NPtG~~  174 (382)
T PRK06108         99 LAAQALVGPGDEVVAVTPLWPNLV----AAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWT  174 (382)
T ss_pred             HHHHHhcCCCCEEEEeCCCccchH----HHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEECCCCCCCcc
Confidence            344457899999999999998877    5567889999998873        6789999888889999999999999999


Q ss_pred             cc---HHHHHHHHHHcCCEEEEeCccCCCCcC---------Cc-cCCCccEEEeccccccccCCCceeEEEEEcChhHHH
Q 021783           77 CD---IRKIAEMAHAHGALLLVDNSIMSPVLS---------RP-LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        77 ~~---~~~l~~~~~~~~~~li~D~a~~~~~~~---------~~-~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~  143 (307)
                      ++   +++|+++|+++|+++|+|++|+.....         .. ...+.+++++|+||.+ |.+|+|+||++++++ +.+
T Consensus       175 ~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~~~~~~~-~~~  252 (382)
T PRK06108        175 ASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNW-AMTGWRLGWLVAPPA-LGQ  252 (382)
T ss_pred             cCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhc-cCcccceeeeeCCHH-HHH
Confidence            85   788999999999999999998743221         11 1124679999999999 667999999999755 444


Q ss_pred             HHHHHHHhcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCC
Q 021783          144 ELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  219 (307)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (307)
                      .+...........+...+..+...++.    ++...+...++.+.+.+.|++.++              +.+.  .+ ..
T Consensus       253 ~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--------------~~~~--~p-~~  315 (382)
T PRK06108        253 VLEKLIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRALPG--------------VEVA--KP-DG  315 (382)
T ss_pred             HHHHHHHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCC--------------Cccc--CC-Ce
Confidence            444443333333444444444444432    233334444444555555544321              1111  11 12


Q ss_pred             CceEEEEeCCHHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHH
Q 021783          220 GSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLIS  296 (307)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~  296 (307)
                      +.++++.+++.....++.+.+ +.+||.+.+|..|..                     ..++++|+|++.  +++++.++
T Consensus       316 g~~~~~~l~~~~~~~~~~~~ll~~~gV~v~pg~~f~~---------------------~~~~~~Ris~~~~~~~l~~~l~  374 (382)
T PRK06108        316 AMYAFFRIPGVTDSLALAKRLVDEAGLGLAPGTAFGP---------------------GGEGFLRWCFARDPARLDEAVE  374 (382)
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHhCCEEEeCchhhCC---------------------CCCCEEEEEecCCHHHHHHHHH
Confidence            445677776443456777766 567999988876321                     125789999998  34444555


Q ss_pred             HHHHHH
Q 021783          297 DLDKAL  302 (307)
Q Consensus       297 ~l~~~l  302 (307)
                      .|.+++
T Consensus       375 ~l~~~l  380 (382)
T PRK06108        375 RLRRFL  380 (382)
T ss_pred             HHHHHH
Confidence            555544

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.96  E-value=7.3e-27  Score=205.07  Aligned_cols=241  Identities=16%  Similarity=0.131  Sum_probs=165.5

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      ++ .++..++++||+|++++|+|+.+.    ..++..|++++.++.+       |++++++.+.++++++++++|+||||
T Consensus       103 ~l~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P~NPtG  178 (383)
T TIGR03540       103 GIAHIPLAFVNPGDIVLVPDPGYPVYR----IGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTG  178 (383)
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCCcchH----HHHHhcCCEEEEEecCcccCCccCHHHHHhhccccceEEEEeCCCCCcC
Confidence            44 344557899999999999998887    5567889999988863       67888888888899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCc-----CC---cc-CCCccEEEeccccccccCCCceeEEEEEcChhHH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVL-----SR---PL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  142 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~-----~~---~~-~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~  142 (307)
                      .+++   +++|+++|++||+++|+|++|.....     ..   .. ..+.+++++||||.+ |.+|+|+||++.+++ +.
T Consensus       179 ~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-g~~GlRiG~~i~~~~-l~  256 (383)
T TIGR03540       179 AVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTY-NMTGWRIGMAVGNAD-LI  256 (383)
T ss_pred             ccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEeccccc-CCccceeeEEeCCHH-HH
Confidence            9998   78999999999999999999962211     11   11 124679999999999 678999999998754 44


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          143 KELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      +.+...........+...+..+...++.    ++...+.+.++.+.+.+.|++.. + .+             .  . ..
T Consensus       257 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~-~~-------------~--~-~~  318 (383)
T TIGR03540       257 AGLGKVKTNVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKKIG-I-DV-------------E--K-PK  318 (383)
T ss_pred             HHHHHHHHhcccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCC-C-Ee-------------c--C-CC
Confidence            4454444333333333334444333322    23334445556666666666431 1 10             0  1 11


Q ss_pred             CCceEEEEeCCHHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc
Q 021783          219 AGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  288 (307)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~  288 (307)
                      .+.++++.+++..+..++.+.+ +.+||.+++|..|..                     ..++++|||++.
T Consensus       319 ~~~~~~~~l~~~~~~~~~~~~ll~~~gi~v~~g~~f~~---------------------~~~~~~Ris~~~  368 (383)
T TIGR03540       319 ATFYVWVPVPEGYTSAEFAARLLEETGVVVTPGVGFGE---------------------YGEGYIRISLTV  368 (383)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHCCEEEecchhhCc---------------------cCCCeEEEEecC
Confidence            2455677776433466777775 567999998876421                     024679999985

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.96  E-value=1e-26  Score=203.89  Aligned_cols=270  Identities=21%  Similarity=0.220  Sum_probs=189.3

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      .++.+++++||+|+++.++|+++...+...++..|++++.++.+     |++++++.++++++++++++++||||.+.|+
T Consensus        77 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~~  156 (376)
T TIGR01977        77 IALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPI  156 (376)
T ss_pred             HHHHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCCCeEEEEECCCCCccccCCH
Confidence            34455789999999999999988877777778889999998863     7899999998899999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH----------
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL----------  148 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~----------  148 (307)
                      ++|.++|+++|+++|+|++|+.|..+ +...+++|++++|+|||+++|.|  .|+++.+++...+.....          
T Consensus       157 ~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~g--~g~l~~~~~~~~~~~~~~~~~~~~~~~~  234 (376)
T TIGR01977       157 EEIGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLGPQG--TGGLYIREGIKLKPLKSGGTGSHSALID  234 (376)
T ss_pred             HHHHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEecccccccCCCC--ceEEEEcCCcCcCceecCCCcccccccc
Confidence            99999999999999999999999876 66678999999999999988888  787777765421111100          


Q ss_pred             ------HHhcCCCCChhhHHHHhhccccH-----HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhcc
Q 021783          149 ------QNAEGSGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  217 (307)
Q Consensus       149 ------~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~  217 (307)
                            .+...++.+.........+++.+     +...++..+.++.+.+.+++.+.+ .+..+.            ++.
T Consensus       235 ~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~-~~~~~~------------~~~  301 (376)
T TIGR01977       235 QPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKV-KIYGPA------------DPA  301 (376)
T ss_pred             ccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCe-EEeCCC------------Ccc
Confidence                  00111112222222222233322     222344455666666666655432 111110            111


Q ss_pred             CCCceEEEEeCCHHHHHHHHhcCCcc-eeecCCCCccceeecccccCCCCCcHHHHHhc-CCCCCeEEEEeccCChHHHH
Q 021783          218 GAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVEVRQAR-GLTEDLVRISVGIEDVNDLI  295 (307)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~iRis~~~~~~~~~i  295 (307)
                      ...++++|.+++.+ ...+.+.|... ||.++.|..++....+              .. ....+.+|+|++..+.++.+
T Consensus       302 ~~~~~v~~~~~~~~-~~~~~~~L~~~~gi~v~~g~~~~~~~~~--------------~~g~~~~~~iRis~~~~~t~~dv  366 (376)
T TIGR01977       302 NRVGVVSFTVEGID-SEEVADILDEKFDIATRTGLHCAPLAHK--------------TIGTFATGTIRLSLGYFNTEEEI  366 (376)
T ss_pred             ccCCeEEEEECCCC-HHHHHHHHhccCCEEEEcccccchHHHH--------------HhCCCCCCeEEEecCCCCCHHHH
Confidence            24678888887654 77888888876 9999988764321111              11 22457899999998888888


Q ss_pred             HHHHHHHhc
Q 021783          296 SDLDKALRT  304 (307)
Q Consensus       296 ~~l~~~l~~  304 (307)
                      +.+.++|++
T Consensus       367 ~~~~~~l~~  375 (376)
T TIGR01977       367 EKLLEALSE  375 (376)
T ss_pred             HHHHHHHhh
Confidence            888888764

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PLN02187 rooty/superroot1

Probab=99.96  E-value=1.3e-26  Score=206.66  Aligned_cols=257  Identities=14%  Similarity=0.134  Sum_probs=172.6

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.++++|||+|++++|+|+.+.    ..++..|++++.++..       |++++++.++++++++++++|+||||
T Consensus       143 al~~~~~~l~~pGd~Vlv~~P~y~~y~----~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~nP~NPTG  218 (462)
T PLN02187        143 GIEIVFESLARPNANILLPRPGFPHYD----ARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVINPNNPCG  218 (462)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCCccHH----HHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcEEEEEeCCCCCCC
Confidence            45 345567899999999999999876    5677889999988751       78999999988899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-----Ccc---CCCccEEEeccccccccCCCceeEEEEEcCh-hHH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGE-RLA  142 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~~---~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~-~~~  142 (307)
                      .+++   +++|+++|++||++||+|++|....+.     ...   .....++++||||.| +.+|+|+||+++.++ .+.
T Consensus       219 ~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f-~~pGlRiG~~v~~~p~~~~  297 (462)
T PLN02187        219 NVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGW-VVPGWKIGWIALNDPEGVF  297 (462)
T ss_pred             CccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhc-CCccceeEEEEecCchhHH
Confidence            9997   889999999999999999999742221     111   112479999999999 678999999998543 222


Q ss_pred             ---HHHHHHHHhcCC--CCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHH
Q 021783          143 ---KELYFLQNAEGS--GLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  212 (307)
Q Consensus       143 ---~~~~~~~~~~~~--~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~  212 (307)
                         +.+.........  ..+...+.++...++     .+....+.+.++.+.+.+.|++.+....              +
T Consensus       298 ~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~--------------~  363 (462)
T PLN02187        298 ETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVC--------------P  363 (462)
T ss_pred             HHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcC--------------C
Confidence               233333333222  223444554444443     2333445555566666666664321100              0


Q ss_pred             hhhccCCCceEEEEeCC-----H-HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEe
Q 021783          213 YSQAKGAGSVLSFLTGS-----L-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  286 (307)
Q Consensus       213 ~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~  286 (307)
                       .. ...+.++++.++.     . +..+.+...+.+.||.+.+|..|.                       .++++||++
T Consensus       364 -~~-P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg-----------------------~~~~iRis~  418 (462)
T PLN02187        364 -KK-PESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALG-----------------------LKNWMRITI  418 (462)
T ss_pred             -CC-CCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccC-----------------------CCCeEEEEe
Confidence             01 1135666666531     1 222334455577899999887632                       256899999


Q ss_pred             cc--CChHHHHHHHHHHHh
Q 021783          287 GI--EDVNDLISDLDKALR  303 (307)
Q Consensus       287 ~~--~~~~~~i~~l~~~l~  303 (307)
                      +.  +.+++.+++|.++++
T Consensus       419 ~~~~e~l~~al~rL~~~l~  437 (462)
T PLN02187        419 GVEAHMLEDALERLKGFCT  437 (462)
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            86  556677777777764

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.96  E-value=2.2e-27  Score=208.14  Aligned_cols=264  Identities=19%  Similarity=0.148  Sum_probs=173.5

Q ss_pred             CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHH
Q 021783           12 GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA   86 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~   86 (307)
                      .+||+|+++..+|+++...+..+ +..|++++.++.+     |++++++.++++++++++++++|+||...|+++|.++|
T Consensus        84 ~~~~~vv~~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~I~~l~  162 (379)
T TIGR03402        84 PEKRHIITTAVEHPAVLSLCQHL-EKQGYKVTYLPVDEEGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIA  162 (379)
T ss_pred             CCCCeEEEcccccHHHHHHHHHH-HHcCCEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEEcccCCeeecccHHHHHHHH
Confidence            56789999999998887766554 4479999999863     78999999999999999999999999999999999999


Q ss_pred             HHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH----HhcCCCCChhhH
Q 021783           87 HAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ----NAEGSGLAPFDC  161 (307)
Q Consensus        87 ~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  161 (307)
                      +++|+++++|++|+.|..+ +...+++|++++|+||++ ||+|  .|++++++...........    .....+......
T Consensus       163 ~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~~-gp~G--~g~l~v~~~~~~~p~~~g~~~~~~~~~gt~~~~~~  239 (379)
T TIGR03402       163 KERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKLH-GPKG--VGALYIRKGTRFRPLLRGGHQERGRRAGTENVPGI  239 (379)
T ss_pred             HHcCCEEEEECcccccccccCcccCCCCEEEEcHHHcC-CCCc--eEEEEECCCCCCCCcccCCccCCCcCCCCccHHHH
Confidence            9999999999999998876 777789999999999955 8999  9999998653211000000    001112222222


Q ss_pred             HHHhhccccHHHHHHHHHHHH----HHHHHHHhc-CCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHH
Q 021783          162 WICLRGVKTMALRVEKQQDNA----QKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHV  236 (307)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~~~----~~l~~~l~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (307)
                      .....+++.....++...+..    +.+.+.++. .+.+              ++..+.....++++.|.+...+ ..++
T Consensus       240 ~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~-~~~~  304 (379)
T TIGR03402       240 VGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDA--------------RLNGDPTKRLPNTVNISFEYIE-GEAI  304 (379)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCE--------------EEeCCCccCCCCEEEEEecCCC-HHHH
Confidence            222233333322333333333    344444432 2222              1111111112346666665544 6788


Q ss_pred             HhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCC----CCeEEEEeccCChHHHHHHHHHHH
Q 021783          237 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRISVGIEDVNDLISDLDKAL  302 (307)
Q Consensus       237 ~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~iRis~~~~~~~~~i~~l~~~l  302 (307)
                      .+.|..+||.++.|..|+...        ..++......|..    ++.||+|++..+.++.++.+.+.|
T Consensus       305 ~~~l~~~gI~v~~g~~c~~~~--------~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l  366 (379)
T TIGR03402       305 LLLLDMEGICASSGSACTSGS--------LEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVL  366 (379)
T ss_pred             HHhhccCCEEEEchhhcCCCC--------CCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHH
Confidence            888989999999998743211        1123445555543    478999999854444544444444

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PLN02651 cysteine desulfurase

Probab=99.96  E-value=1.5e-27  Score=207.94  Aligned_cols=262  Identities=18%  Similarity=0.163  Sum_probs=179.6

Q ss_pred             hcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHH
Q 021783           10 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE   84 (307)
Q Consensus        10 ~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~   84 (307)
                      +.++||+|++++.+|+++...+..+ +..|++++.++.+     |+++++++++++++++++++++|+||.+.|+++|.+
T Consensus        84 ~~~~g~~vl~~~~~h~s~~~~~~~~-~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I~~  162 (364)
T PLN02651         84 YKDKKKHVITTQTEHKCVLDSCRHL-QQEGFEVTYLPVKSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGE  162 (364)
T ss_pred             ccCCCCEEEEcccccHHHHHHHHHH-HhcCCEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHHHH
Confidence            4578999999999999887777554 4679999988863     789999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH------HhcCCCCC
Q 021783           85 MAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ------NAEGSGLA  157 (307)
Q Consensus        85 ~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~------~~~~~~~~  157 (307)
                      +||++|+++++|++|+.|..+ +..++++|++++|.|||+ ||.|  .|+++++++..........      .....+.+
T Consensus       163 ~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~~-gp~G--~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~  239 (364)
T PLN02651        163 LCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKIY-GPKG--VGALYVRRRPRVRLEPLMSGGGQERGRRSGTEN  239 (364)
T ss_pred             HHHHcCCEEEEEcchhhCCcccCcccCCCCEEEechhhhC-CCCc--eEEEEEcCCCCCCCCccccCCCccCCccCCCcc
Confidence            999999999999999999877 888899999999999985 8888  9999998754322111110      01112222


Q ss_pred             hhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCC-CCchHHHhh-hc-cCCCceEEEEeCCHHHHH
Q 021783          158 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE-HPGHELHYS-QA-KGAGSVLSFLTGSLALSK  234 (307)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~-~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~  234 (307)
                      .........+++.+....+++.+..+.+.+++.+.          +.. .+++++..+ .+ ....+++.|.+++.+ ..
T Consensus       240 ~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~----------l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~  308 (364)
T PLN02651        240 TPLVVGLGAACELAMKEMDYDEKHMKALRERLLNG----------LRAKLGGVRVNGPRDPEKRYPGTLNLSFAYVE-GE  308 (364)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----------HHhhCCCEEEECCCCcccCcCCEEEEEeCCCC-HH
Confidence            22333333444433333344444444444444321          100 112222221 11 123568899887665 67


Q ss_pred             HHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCC----CCeEEEEeccCChHHHHH
Q 021783          235 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRISVGIEDVNDLIS  296 (307)
Q Consensus       235 ~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~iRis~~~~~~~~~i~  296 (307)
                      ++.+.|..  |.++.|+.++.   +..     .++....+.|..    .+.+|+|++..+++++|+
T Consensus       309 ~~~~~L~~--i~v~~g~~c~~---~~~-----~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did  364 (364)
T PLN02651        309 SLLMGLKE--VAVSSGSACTS---ASL-----EPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD  364 (364)
T ss_pred             HHHHHhCC--EEEEchhhcCC---CCC-----CcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence            88888875  99999987332   211     134455566654    389999999987777653

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.95  E-value=2.1e-26  Score=202.81  Aligned_cols=255  Identities=15%  Similarity=0.134  Sum_probs=173.5

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      ++ .++.+++++||+|++++|+|+.+.    ..++..|++++.++.+       |++++++.+.+++++|++++|+||||
T Consensus       118 al~~~~~~~~~~gd~Vlv~~P~y~~~~----~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG  193 (410)
T PRK06290        118 ALAMLPSCFINPGDVTLMTVPGYPVTG----THTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTG  193 (410)
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCCccHH----HHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEECCCCCCC
Confidence            44 344557899999999999998887    6677889999999873       67888888888899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCc----CC---cc-CCCccEEEeccccccccCCCceeEEEEEcChhHHH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVL----SR---PL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~----~~---~~-~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~  143 (307)
                      .+++   +++|.++|++||++||+|++|+....    ..   .. ..+.+++++||||.+ |.+|+|+||++++++ +.+
T Consensus       194 ~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~-g~~GlRiG~ii~~~~-l~~  271 (410)
T PRK06290        194 AVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAY-NMTGWRLAFVVGNEL-IVK  271 (410)
T ss_pred             cCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhc-CCchhheEeEEeCHH-HHH
Confidence            9997   68888889999999999999974221    11   11 225679999999999 678999999998755 444


Q ss_pred             HHHHHHHhcCCCCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCC
Q 021783          144 ELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG  220 (307)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  220 (307)
                      .+...........+...+..+...++.   ++...+.+.++.+.+.+.|++.. + .+             .  .+ ..+
T Consensus       272 ~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-~~-------------~--~p-~g~  333 (410)
T PRK06290        272 AFATVKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNEVG-F-KA-------------E--MP-GGT  333 (410)
T ss_pred             HHHHHHhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhCC-C-ee-------------c--CC-Cee
Confidence            454444333333333334444444432   23334445566666666666431 1 00             0  11 123


Q ss_pred             ceEEEEeCCH-------HHHHHHHhcCCcce-eecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec-----
Q 021783          221 SVLSFLTGSL-------ALSKHVVETTKYFS-ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-----  287 (307)
Q Consensus       221 ~~~~~~~~~~-------~~~~~~~~~l~~~g-i~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~-----  287 (307)
                      .++|+++++.       .+..++.+.|..++ +.+.+|..                         ..+++||+++     
T Consensus       334 f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~-------------------------~~~~lRi~~~~~~~~  388 (410)
T PRK06290        334 FYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDD-------------------------AGHFLRFSVTFEAKD  388 (410)
T ss_pred             eEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCcc-------------------------ccCeEEEEEEccccc
Confidence            4445566432       13667777776654 44434332                         1257999996     


Q ss_pred             cCChHHHHHHHHHHHhcCC
Q 021783          288 IEDVNDLISDLDKALRTGP  306 (307)
Q Consensus       288 ~~~~~~~i~~l~~~l~~~~  306 (307)
                      .++.+++++.|.+.|.++.
T Consensus       389 ~~~~~~~~~~l~~~~~~~~  407 (410)
T PRK06290        389 EEEEDRILEEIKRRLSDVE  407 (410)
T ss_pred             ccchhHHHHHHHHHHhhcc
Confidence            3889999999999987653

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.95  E-value=9e-27  Score=205.02  Aligned_cols=254  Identities=15%  Similarity=0.105  Sum_probs=167.6

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.++++|||+|++++|+|+.+.    ..+...|++++.++.+       |++++++.+.++++++++++|+||||
T Consensus       109 al~~~~~~~~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPtG  184 (394)
T PRK05942        109 GLTHLALAYVNPGDVVLVPSPAYPAHF----RGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTT  184 (394)
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCCcchH----HHHHHcCCEEEEeecCCccCCccCHHHHHHhccccceEEEEcCCCCCCC
Confidence            44 344567899999999999998887    4456789999988763       67899998888999999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCc--------CCcc-CCCccEEEeccccccccCCCceeEEEEEcChhHH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVL--------SRPL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  142 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~--------~~~~-~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~  142 (307)
                      .+++   +++|.++|+++|+++|+|++|+....        .... ..+..++++||||.+ |.+|+|+||++++++ +.
T Consensus       185 ~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-~~~GlRiG~i~~~~~-l~  262 (394)
T PRK05942        185 ATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTY-NMAGWRVGFVVGNRH-II  262 (394)
T ss_pred             CcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhcc-CChhhheeeeecCHH-HH
Confidence            9997   88999999999999999999863221        1111 124568899999999 678999999998754 55


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHhhccccHH----HHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          143 KELYFLQNAEGSGLAPFDCWICLRGVKTMA----LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      +.+...........+...+..+...++...    ...+.+.++.+.+.+.++... + .             +.  . ..
T Consensus       263 ~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~-~-------------~~--~-~~  324 (394)
T PRK05942        263 QGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGELG-W-N-------------IP--P-TK  324 (394)
T ss_pred             HHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCC-C-e-------------ec--C-CC
Confidence            555554443333334444444444443222    222333344444555554321 1 0             00  1 11


Q ss_pred             CCceEEEEeCCHHHHHHHHh-cCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHH
Q 021783          219 AGSVLSFLTGSLALSKHVVE-TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD  297 (307)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~-~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~  297 (307)
                      .+.+++++++......++.. .+..+||.+.+|..|..                     ..++++||+++ .+.+.+.+.
T Consensus       325 ~~~f~~~~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~---------------------~~~~~iRis~~-~~~~~l~~~  382 (394)
T PRK05942        325 ATMYLWVPCPVGMGSTDFALNVLQKTGVVVTPGNAFGE---------------------GGEGYVRISLI-ADCDRLGEA  382 (394)
T ss_pred             eeeEEEEECCCCCCHHHHHHHHHHHCCEEEeCChhhCc---------------------CCCCeEEEEec-CCHHHHHHH
Confidence            24467777753222344444 45568999988876421                     12568999998 456666666


Q ss_pred             HHHHH
Q 021783          298 LDKAL  302 (307)
Q Consensus       298 l~~~l  302 (307)
                      +.+..
T Consensus       383 l~~l~  387 (394)
T PRK05942        383 LDRLK  387 (394)
T ss_pred             HHHHH
Confidence            65543

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.95  E-value=9.1e-27  Score=204.72  Aligned_cols=253  Identities=13%  Similarity=0.056  Sum_probs=163.6

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.++++|||+|++++|+|+.+.    ..++..|++++.++.+       |++++++.+.++++++++++|+||||
T Consensus       104 al~~~~~~l~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG  179 (388)
T PRK07366        104 GTAHLPLAVLNPGDFALLLDPGYPSHA----GGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTT  179 (388)
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCCcchH----HHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCC
Confidence            44 344457899999999999999888    6678899999999874       45677777777899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCc------CCcc---C-CCccEEEeccccccccCCCceeEEEEEcChhH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVL------SRPL---E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~------~~~~---~-~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~  141 (307)
                      .+++   +++|+++|++||++||+|++|..-..      +...   . ....++++||||.+ |.+|+|+||++++++ +
T Consensus       180 ~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-g~~GlRiG~~v~~~~-l  257 (388)
T PRK07366        180 AIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSY-NMGGFRIGFAIGNAQ-L  257 (388)
T ss_pred             ccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeeccccc-CCcchhheehcCCHH-H
Confidence            9997   67788899999999999999963221      1111   1 13568999999999 678999999998755 5


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHhhccc----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhcc
Q 021783          142 AKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  217 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~  217 (307)
                      .+.+..................+...+.    .++...+.+.++.+.+.+.|++.. + .+.               . .
T Consensus       258 i~~l~~~~~~~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~~~-~-~~~---------------~-p  319 (388)
T PRK07366        258 IQALRQVKAVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQIG-W-PVP---------------L-P  319 (388)
T ss_pred             HHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCC-C-ccc---------------C-C
Confidence            4545444433322221111111222221    223333444455555555565431 1 000               1 2


Q ss_pred             CCCceEEEEeCCH--HHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChH
Q 021783          218 GAGSVLSFLTGSL--ALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVN  292 (307)
Q Consensus       218 ~~~~~~~~~~~~~--~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~  292 (307)
                      ..+.++++++++.  ....++.+.+ +..||.+.+|..|..                     ..++++||+++.  ++++
T Consensus       320 ~~g~f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~---------------------~~~~~iRi~~~~~~~~l~  378 (388)
T PRK07366        320 EATMYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFGK---------------------SGEGYVRFALVHDPDILE  378 (388)
T ss_pred             CeeEEEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhCc---------------------CCCCeEEEEecCCHHHHH
Confidence            2467778887542  1245666555 667999998876421                     124689999985  3344


Q ss_pred             HHHHHHHH
Q 021783          293 DLISDLDK  300 (307)
Q Consensus       293 ~~i~~l~~  300 (307)
                      +.+++|.+
T Consensus       379 ~~l~rl~~  386 (388)
T PRK07366        379 EAVERIAA  386 (388)
T ss_pred             HHHHHHHH
Confidence            44444443

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.95  E-value=1.3e-26  Score=203.82  Aligned_cols=256  Identities=17%  Similarity=0.180  Sum_probs=172.2

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~   77 (307)
                      .++.+++++||+|++++|+|+++.    ..++..|++++.++.+       |++++++.++++++++++++|+||||.++
T Consensus       108 ~~~~~l~~~g~~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p~NPtG~~~  183 (391)
T PRK08361        108 LAFESLLEEGDEVIIPDPAFVCYV----EDAKIAEAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATL  183 (391)
T ss_pred             HHHHHhcCCCCEEEEcCCCCcccH----HHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCCCCCCCcCc
Confidence            344567899999999999998887    5567789999988762       68999999988899999999999999999


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCccCCCCcC-----Cc--cCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH
Q 021783           78 D---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RP--LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  147 (307)
Q Consensus        78 ~---~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~--~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~  147 (307)
                      |   +++|.++|+++++++|+|++|+.....     ..  ...+.+++++|+||.+ |.+|+|+||++++++.+ +.+..
T Consensus       184 ~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~GlRiG~~~~~~~~~-~~~~~  261 (391)
T PRK08361        184 DKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTF-AMTGWRLGFVIAPEQVI-KDMIK  261 (391)
T ss_pred             CHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhc-CCcHhhhhhhccCHHHH-HHHHH
Confidence            8   889999999999999999999743211     11  1225789999999999 66799999999975544 44444


Q ss_pred             HHHhcCCCCChhhHHHHhhccc------cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCc
Q 021783          148 LQNAEGSGLAPFDCWICLRGVK------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS  221 (307)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (307)
                      .........+...+..+...++      .++...+...++.+.+.+.|++.+.+              .+.  .+ ..+.
T Consensus       262 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~--------------~~~--~p-~g~~  324 (391)
T PRK08361        262 LHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHI--------------KVF--EP-KGAF  324 (391)
T ss_pred             HHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCC--------------eec--CC-CEEE
Confidence            4433323334444444433332      13333444455555566666643221              111  11 1234


Q ss_pred             eEEEEeCC-HHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHHH
Q 021783          222 VLSFLTGS-LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISD  297 (307)
Q Consensus       222 ~~~~~~~~-~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~  297 (307)
                      ++++.++. ..+..++.+.+ +.+||.+.+|..|..                     ..++++||+++.  +++++.++.
T Consensus       325 ~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~---------------------~~~~~iRi~~~~~~~~l~~al~~  383 (391)
T PRK08361        325 YVFANIDETGMSSEDFAEWLLEKARVVVIPGTAFGK---------------------AGEGYIRISYATSKEKLIEAMER  383 (391)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCCEEEcCchhhCC---------------------CCCCEEEEEecCCHHHHHHHHHH
Confidence            56667653 11355666666 457999998876421                     125789999986  445555666


Q ss_pred             HHHHHhc
Q 021783          298 LDKALRT  304 (307)
Q Consensus       298 l~~~l~~  304 (307)
                      |.+.+++
T Consensus       384 l~~~l~~  390 (391)
T PRK08361        384 MEKALEE  390 (391)
T ss_pred             HHHHHhc
Confidence            6666544

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.95  E-value=1.3e-26  Score=206.10  Aligned_cols=261  Identities=20%  Similarity=0.181  Sum_probs=177.5

Q ss_pred             HHH-HHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcCC-CceEEEEe-CCCCCccc
Q 021783            3 ALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGP-WTKLVWVE-SPTNPRQQ   75 (307)
Q Consensus         3 al~-~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~~-~~~~v~~~-~~~n~tG~   75 (307)
                      |+. ++..+++|||+|++++|+|....    ++++..|++++.||++    |+++|++.+.. ++|+++++ +.+||||.
T Consensus       167 al~l~~~~l~~pGd~v~vE~PtY~~~~----~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~  242 (459)
T COG1167         167 ALDLLLRLLLDPGDTVLVEDPTYPGAL----QALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGV  242 (459)
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCcHHHH----HHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCC
Confidence            553 34457899999999999999998    7788899999999986    89999999974 78999888 78999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCccCCCCc--------CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHH
Q 021783           76 ICD---IRKIAEMAHAHGALLLVDNSIMSPVL--------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  144 (307)
Q Consensus        76 ~~~---~~~l~~~~~~~~~~li~D~a~~~~~~--------~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~  144 (307)
                      +++   .++|+++|++||++||+|+.|+.-.+        ...+..+.+++++||||.++  +|+|+||++++++ +.+.
T Consensus       243 tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~--PglRlG~vv~p~~-~~~~  319 (459)
T COG1167         243 TMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLA--PGLRLGYVVAPPE-LIEK  319 (459)
T ss_pred             ccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhcc--cccceeeeeCCHH-HHHH
Confidence            997   77999999999999999999973221        12233478999999999994  6999999999865 5455


Q ss_pred             HHHHHHhcCCCCChhhHHHHh----hc-cc-cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          145 LYFLQNAEGSGLAPFDCWICL----RG-VK-TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~----~~-l~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      +...........+...+....    .+ .. +++...+.+.+..+.+.+.|+++..             ....|. .+. 
T Consensus       320 ~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~-------------~~~~~~-~p~-  384 (459)
T COG1167         320 LLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLP-------------ELATWT-RPE-  384 (459)
T ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCeeee-cCC-
Confidence            555444444333333322211    21 11 1222222223333444445544321             011111 111 


Q ss_pred             CCceEEEEeCCHHHHHHHHhcCCcceeecCC-CCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc---CChHHH
Q 021783          219 AGSVLSFLTGSLALSKHVVETTKYFSITVSF-GSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDL  294 (307)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~-g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~  294 (307)
                      .|.++|+.++...+...+.+.+..+|+.+.+ |..|...                   +...+++|++++.   +++++.
T Consensus       385 gG~flwl~l~~~~~~~~l~~~a~~~gv~i~~~g~~f~~~-------------------~~~~~~~Rl~~s~~~~e~i~~g  445 (459)
T COG1167         385 GGLFLWLELPEGIDARELLAAALEKGVVVTPLGSAFSAD-------------------GDPRNGLRLSFSSPSEEEIEEG  445 (459)
T ss_pred             ceEEEEEEcCCCCCHHHHHHHHHHCCCEEEcCCccccCC-------------------CCCCCeEEEEcCCCCHHHHHHH
Confidence            3678888887665588899998889998887 7764421                   1135679999987   455555


Q ss_pred             HHHHHHHHhc
Q 021783          295 ISDLDKALRT  304 (307)
Q Consensus       295 i~~l~~~l~~  304 (307)
                      ++.|.+.+.+
T Consensus       446 i~~l~~~~~~  455 (459)
T COG1167         446 IKRLAALLRE  455 (459)
T ss_pred             HHHHHHHHHH
Confidence            5555555543

>PRK08960 hypothetical protein; Provisional

Probab=99.95  E-value=4.7e-26  Score=200.07  Aligned_cols=255  Identities=15%  Similarity=0.075  Sum_probs=167.4

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++..+++|||+|++++|+|+.+.    ..++..|++++.++.+       |++++++.++++++++++++|+||||
T Consensus       104 al~~~~~~~~~~gd~vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG  179 (387)
T PRK08960        104 ALLLASSLLVDPGKHWLLADPGYPCNR----HFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTG  179 (387)
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCccceEEEEECCCCCCC
Confidence            44 344457899999999999999888    4556678888888752       67899998888899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCcC----Ccc-CCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RPL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  146 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~----~~~-~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~  146 (307)
                      .+++   +++|+++|++||+++|+|++|..-...    ... .....++++|+||.+ |.+|+|+||++++++ +.+.+.
T Consensus       180 ~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~~~~~~~-~~~~~~  257 (387)
T PRK08960        180 TLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYF-GMTGWRLGWLVAPPA-AVPELE  257 (387)
T ss_pred             cCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhccCCEEEEeeccccc-CCcccEEEEEEcCHH-HHHHHH
Confidence            9997   667888899999999999998632211    111 124679999999999 678999999999865 444444


Q ss_pred             HHHHhcCCCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCc
Q 021783          147 FLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS  221 (307)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (307)
                      ..........+...+.++...+.     .+....+.+.++.+.+.+.|+... +              .++. . ...+.
T Consensus       258 ~~~~~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~--------------~~~~-~-p~g~~  320 (387)
T PRK08960        258 KLAQNLYISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALRELG-F--------------GIAV-E-PQGAF  320 (387)
T ss_pred             HHHhhhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcC-C--------------cCCc-C-CCeeE
Confidence            44433333334444444433332     222333444555555666665431 0              0000 1 11355


Q ss_pred             eEEEEeCCH-HHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHH
Q 021783          222 VLSFLTGSL-ALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD  299 (307)
Q Consensus       222 ~~~~~~~~~-~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~  299 (307)
                      +++++++.. .+..++.+.+ +.+||.+.+|..|..                    +..++++||+++. +.+.+.+.+.
T Consensus       321 f~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--------------------~~~~~~iRi~~~~-~~~~l~~al~  379 (387)
T PRK08960        321 YLYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGR--------------------HQAGQHVRFAYTQ-SLPRLQEAVE  379 (387)
T ss_pred             EEEEeccccCCCHHHHHHHHHHhCCEEEcCchHhCC--------------------CCCCCeEEEEecC-CHHHHHHHHH
Confidence            667777531 2256676664 568999999876431                    0124689999996 4555555554


Q ss_pred             HH
Q 021783          300 KA  301 (307)
Q Consensus       300 ~~  301 (307)
                      +.
T Consensus       380 ~l  381 (387)
T PRK08960        380 RI  381 (387)
T ss_pred             HH
Confidence            43

>PRK08068 transaminase; Reviewed

Probab=99.95  E-value=3.1e-26  Score=201.33  Aligned_cols=249  Identities=12%  Similarity=0.074  Sum_probs=166.4

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~   77 (307)
                      .++.+++++||+|++++|+|+.+.    ..++..|++++.++.+       |++++++.+..+++++++++|+||||.++
T Consensus       109 ~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPTG~~~  184 (389)
T PRK08068        109 ELPQCLMNPGDTILVPDPGYPDYL----SGVALARAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAVA  184 (389)
T ss_pred             HHHHHhCCCCCEEEEcCCCCcchH----HHHHhcCCEEEEeecccccCCCCCHHHHHHhccccceEEEEECCCCCCCCcC
Confidence            445567899999999999998887    6677899999999873       56788888877899999999999999999


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCccCCCCc------C---CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHH
Q 021783           78 D---IRKIAEMAHAHGALLLVDNSIMSPVL------S---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  145 (307)
Q Consensus        78 ~---~~~l~~~~~~~~~~li~D~a~~~~~~------~---~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~  145 (307)
                      +   +++|+++|++||+++|+|++|..-..      .   .....+..++++||||.+ |.+|+|+||++.+++ +.+.+
T Consensus       185 s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~-l~~~l  262 (389)
T PRK08068        185 TKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTF-NMAGWRVAFAVGNES-VIEAI  262 (389)
T ss_pred             CHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhcc-CCccceeEeEecCHH-HHHHH
Confidence            7   56888899999999999999953111      1   111234679999999999 678999999998754 55555


Q ss_pred             HHHHHhcCCCCChhhHHHHhhcc----ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCc
Q 021783          146 YFLQNAEGSGLAPFDCWICLRGV----KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS  221 (307)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (307)
                      .........+.++..+..+...+    +.++...+.+.++.+.+.+.++... +        .      +.  + ...+.
T Consensus       263 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~g-~--------~------~~--~-~~g~~  324 (389)
T PRK08068        263 NLLQDHLFVSLFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISACREIG-W--------E------VD--A-PKGSF  324 (389)
T ss_pred             HHHHhhccCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCC-C--------c------cc--C-CCeeE
Confidence            44443333233322233322222    2233334445555555666665431 1        0      00  1 11234


Q ss_pred             eEEEEeCCHHHHHHHHhcCCc-ceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHH
Q 021783          222 VLSFLTGSLALSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD  299 (307)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~  299 (307)
                      ++++.+++......+.+.+.. +||.+.+|..|..                     ..++++||+++.. .+.+.+.+.
T Consensus       325 ~~~v~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~---------------------~~~~~iRi~~~~~-~~~l~~al~  381 (389)
T PRK08068        325 FAWMPVPKGYTSEQFADLLLEKAHVAVAPGNGFGE---------------------HGEGYVRVGLLTD-EERLREAVE  381 (389)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCEEEecchHhCc---------------------cCCCeEEEEEcCC-HHHHHHHHH
Confidence            567787643346778888764 6999988876421                     1256899999863 344444443

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.95  E-value=2.7e-26  Score=202.19  Aligned_cols=256  Identities=16%  Similarity=0.165  Sum_probs=169.5

Q ss_pred             HHHHHhcCC---CCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            5 AAVTHLLGT---GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         5 ~~~~~~~~~---gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      .++.++++|   ||+|++++|.|+.+.    ..++..|++++.+|.+       |++++++.+.++++++++++|+||||
T Consensus       105 ~~~~~l~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG  180 (396)
T PRK09147        105 AFAQTVIDRDGPGPLVVCPNPFYQIYE----GAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVCSPGNPTG  180 (396)
T ss_pred             HHHHHHcCCCCCCCEEEEcCCCccchH----HHHHhcCCEEEEeccCccccCccCHHHHHHHHhhccEEEEEcCCCCCcC
Confidence            345567899   999999999998877    6677889999999863       57888887777899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCcCC---------------ccCCCccEEEeccccccccCCCceeEEEEE
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR---------------PLELGADIVMHSATKFIAGHSDVMAGVLAV  136 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~---------------~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~  136 (307)
                      .+++   +++|+++|++|+++||+|++|....+..               ....+..++++||||.+ +.+|+|+||+++
T Consensus       181 ~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~~GlRiG~~~~  259 (396)
T PRK09147        181 AVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRS-NVPGLRSGFVAG  259 (396)
T ss_pred             ccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEecccccc-CCccceeeeecC
Confidence            9995   8888899999999999999997432110               01235679999999988 668999999998


Q ss_pred             cChhHHHHHHHHHHhcCCCCChhhHHHHhhccc---cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHh
Q 021783          137 KGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  213 (307)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~  213 (307)
                      +++ +.+.+...........+...+..+...+.   .+....+.+.+..+.+.+.|+..  + .+               
T Consensus       260 ~~~-l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~-~~---------------  320 (396)
T PRK09147        260 DAA-LLKKFLLYRTYHGCAMPPAVQAASIAAWNDEAHVRENRALYREKFDAVTPILAPV--L-DV---------------  320 (396)
T ss_pred             CHH-HHHHHHHHhhhcccCCCHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHh--c-CC---------------
Confidence            754 44445444433333344444444333332   23333444455555555555432  0 00               


Q ss_pred             hhccCCCceEEEEeCCHHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CC
Q 021783          214 SQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--ED  290 (307)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~  290 (307)
                      .. ...+.++|++++ .. ..++.+.+ +..||.+.+|..|......               .....+++||+++.  ++
T Consensus       321 ~~-p~~g~f~~~~~~-~~-~~~~~~~ll~~~gv~v~pg~~f~~~~~~---------------~~~~~~~iRi~~~~~~~~  382 (396)
T PRK09147        321 QL-PDAGFYLWAKVP-GD-DTEFARRLYADYNVTVLPGSYLAREAHG---------------VNPGAGRVRIALVAPLAE  382 (396)
T ss_pred             CC-CCeeEEEEEECC-CC-HHHHHHHHHHhCCEEEeCCccccccccC---------------CCCCCCeEEEEecCCHHH
Confidence            01 124677788876 22 45565655 4679999988765321000               01135789999986  44


Q ss_pred             hHHHHHHHHHHH
Q 021783          291 VNDLISDLDKAL  302 (307)
Q Consensus       291 ~~~~i~~l~~~l  302 (307)
                      +++.+++|.+++
T Consensus       383 l~~~l~rl~~~~  394 (396)
T PRK09147        383 CVEAAERIVDFC  394 (396)
T ss_pred             HHHHHHHHHHHh
Confidence            555566665554

>PRK08912 hypothetical protein; Provisional

Probab=99.95  E-value=2.4e-26  Score=201.97  Aligned_cols=258  Identities=18%  Similarity=0.137  Sum_probs=171.5

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG~   75 (307)
                      |+ .++.+++++||+|++++|+|+.+.    ..++..|++++.++.+      |++++++.+.++++++++++|+||||.
T Consensus        99 al~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~  174 (387)
T PRK08912         99 ALAAALLALVEPGDEVVLFQPLYDAYL----PLIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPRTKAVLLNNPLNPAGK  174 (387)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCchhhH----HHHHHcCCEEEEEecCcccCcCCHHHHHHHhCccceEEEEeCCCCCcCc
Confidence            44 345567899999999999998877    6678889999888763      679999998888999999999999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCccCCCCc------C--Ccc-CCCccEEEeccccccccCCCceeEEEEEcChhHHH
Q 021783           76 ICD---IRKIAEMAHAHGALLLVDNSIMSPVL------S--RPL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        76 ~~~---~~~l~~~~~~~~~~li~D~a~~~~~~------~--~~~-~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~  143 (307)
                      +++   +++|.++|++||+++|+|++|+....      +  ... ..+.+++++|+||.+ |.+|+|+||++++++ +.+
T Consensus       175 ~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~-~~~  252 (387)
T PRK08912        175 VFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIF-SLTGWKVGFVCAAPP-LLR  252 (387)
T ss_pred             ccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhc-cCcCceeEEEecCHH-HHH
Confidence            997   77799999999999999999853211      1  111 135789999999999 778999999999755 444


Q ss_pred             HHHHHHHhcCCCCChhhHHHHhhccc----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCC
Q 021783          144 ELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  219 (307)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (307)
                      .+...........++..+..+...+.    .++...+.+.++.+.+.+.|+... +        .      +.  + ...
T Consensus       253 ~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~--------~------~~--~-~~g  314 (387)
T PRK08912        253 VLAKAHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRIG-F--------P------VL--P-SQG  314 (387)
T ss_pred             HHHHHHhhccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCC-C--------c------cc--C-CCc
Confidence            44444433322233323333333321    222333444555555666665431 1        0      00  1 112


Q ss_pred             CceEEEEeCC---HHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHH
Q 021783          220 GSVLSFLTGS---LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVND  293 (307)
Q Consensus       220 ~~~~~~~~~~---~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~  293 (307)
                      +.++++.++.   ..+..++.+.+ +..||.+.+|..|...                   ....+++||+++.  +.+++
T Consensus       315 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~-------------------~~~~~~iRl~~~~~~~~l~~  375 (387)
T PRK08912        315 TYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEE-------------------DPVTSVVRFCFAKRDATLDE  375 (387)
T ss_pred             ceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCC-------------------CCCCCEEEEEEeCCHHHHHH
Confidence            4566667653   12356677765 5679999988764311                   1125789999996  45555


Q ss_pred             HHHHHHHHHh
Q 021783          294 LISDLDKALR  303 (307)
Q Consensus       294 ~i~~l~~~l~  303 (307)
                      .+++|.++++
T Consensus       376 ~l~rl~~~l~  385 (387)
T PRK08912        376 AVERLAAARR  385 (387)
T ss_pred             HHHHHHHHHh
Confidence            5666666554

>PRK07682 hypothetical protein; Validated

Probab=99.95  E-value=1.3e-26  Score=203.06  Aligned_cols=258  Identities=16%  Similarity=0.158  Sum_probs=175.7

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.++++|||+|++++|+|+.+.    ..++..|.+++.++.+       |++++++.+.++++++++++|+||||
T Consensus        93 al~~~~~~l~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG  168 (378)
T PRK07682         93 ALDVAMRAIINPGDEVLIVEPSFVSYA----PLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTG  168 (378)
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCchhhH----HHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCCcC
Confidence            45 344567899999999999998776    5566778888888752       68999999988899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-------C-ccCCCccEEEeccccccccCCCceeEEEEEcChhHHH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-------R-PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-------~-~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~  143 (307)
                      .+++   +++|+++|++|++++|+|++|+.....       . ....+.+++++||||.+ +.+|+|+||++++++ +.+
T Consensus       169 ~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlR~G~~~~~~~-~i~  246 (378)
T PRK07682        169 AVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGF-AMTGWRLGFIAAPVY-FSE  246 (378)
T ss_pred             cCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccc-cChhhhhhhhhcCHH-HHH
Confidence            9985   889999999999999999999743221       1 11125789999999999 667999999999755 555


Q ss_pred             HHHHHHHhcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCC
Q 021783          144 ELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  219 (307)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (307)
                      .+...........+...+..+...++.    +....+.+.++.+.+.+.|++.. +        .-.        .+ ..
T Consensus       247 ~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~--------~~~--------~p-~g  308 (378)
T PRK07682        247 AMLKIHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEIG-L--------TCH--------VP-GG  308 (378)
T ss_pred             HHHHHHHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHCC-C--------ccC--------CC-Ce
Confidence            554444333333344444444444432    23334445556666666666431 1        000        11 12


Q ss_pred             CceEEEEeCC-HHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHH
Q 021783          220 GSVLSFLTGS-LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLI  295 (307)
Q Consensus       220 ~~~~~~~~~~-~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i  295 (307)
                      +.+++..+.. .....++.+.+ +.+||.+.+|..|..                     ..++++|||++.  +++++.+
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~---------------------~~~~~iRis~~~~~~~l~~~l  367 (378)
T PRK07682        309 AFYAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSVFGE---------------------SGEGFIRCSYATSLEQLQEAM  367 (378)
T ss_pred             eEEEEEeccCCCCCHHHHHHHHHHhCCEEEcCchhhCc---------------------CCCCeEEEEeCCCHHHHHHHH
Confidence            3344444531 12356777775 467999998876421                     125789999986  5777778


Q ss_pred             HHHHHHHhcC
Q 021783          296 SDLDKALRTG  305 (307)
Q Consensus       296 ~~l~~~l~~~  305 (307)
                      ++|.+++++.
T Consensus       368 ~~l~~~l~~~  377 (378)
T PRK07682        368 KRMKRFVENK  377 (378)
T ss_pred             HHHHHHHhhc
Confidence            8888777654

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.95  E-value=4.6e-26  Score=201.11  Aligned_cols=255  Identities=14%  Similarity=0.063  Sum_probs=168.2

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~   77 (307)
                      .++.++++|||+|++++|+|+.+.    ..++..|++++.++.+       |++++++.+.++++++++++|+||||.++
T Consensus       112 ~~~~~l~~~gd~v~v~~P~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~nP~NPTG~~~  187 (409)
T PLN00143        112 IIIKVLARPEANILLPRPGFPDVE----TYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVY  187 (409)
T ss_pred             HHHHHHcCCCCEEEEcCCCCcCHH----HHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEECCCCCCCCcc
Confidence            344567899999999999998887    5677889999988752       78999998888899999999999999999


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCccCCCCc------C--CccCCCccEEEeccccccccCCCceeEEEEEc-ChhHHH--
Q 021783           78 D---IRKIAEMAHAHGALLLVDNSIMSPVL------S--RPLELGADIVMHSATKFIAGHSDVMAGVLAVK-GERLAK--  143 (307)
Q Consensus        78 ~---~~~l~~~~~~~~~~li~D~a~~~~~~------~--~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~-~~~~~~--  143 (307)
                      +   +++|+++|++||+++|+|++|..-..      +  .....+..++++||||.| +.+|+|+||++++ ++.+.+  
T Consensus       188 s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f-~~pGlRvG~~v~~~p~~~~~~~  266 (409)
T PLN00143        188 SYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRW-MIPGWGLGWLVTCDPSGLLQIC  266 (409)
T ss_pred             CHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhc-CCCccceEEEEeeCchhhhhhH
Confidence            7   78889999999999999999973221      1  112234679999999999 6689999999994 332321  


Q ss_pred             ----HHHHHHHhcCCCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhh
Q 021783          144 ----ELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS  214 (307)
Q Consensus       144 ----~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~  214 (307)
                          .+........ ..+...+..+...++     .+....+.+.++.+.+.+.|++.+.              ...+ .
T Consensus       267 ~~~~~~~~~~~~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~--------------~~~~-~  330 (409)
T PLN00143        267 EIADSIKKALNPAP-FPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPC--------------IMCP-Q  330 (409)
T ss_pred             HHHHHHHHHHhccC-CCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCC--------------CCCC-C
Confidence                1222221111 123334444443332     2333344444555555555543211              0000 0


Q ss_pred             hccCCCceEEEEeCC-----HHHHHHHH-hcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc
Q 021783          215 QAKGAGSVLSFLTGS-----LALSKHVV-ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  288 (307)
Q Consensus       215 ~~~~~~~~~~~~~~~-----~~~~~~~~-~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~  288 (307)
                      . ...+.++|++++.     .+....+. +.+...||.+.+|..|.                       .++++||+++.
T Consensus       331 ~-p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~-----------------------~~~~iRi~~~~  386 (409)
T PLN00143        331 K-AEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVG-----------------------LKNWLRITFAV  386 (409)
T ss_pred             C-CCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccC-----------------------CCCeEEEEEcC
Confidence            1 1236677777752     11233444 44577899999887632                       25679999985


Q ss_pred             --CChHHHHHHHHHHHhc
Q 021783          289 --EDVNDLISDLDKALRT  304 (307)
Q Consensus       289 --~~~~~~i~~l~~~l~~  304 (307)
                        +++++.+++|.+.+++
T Consensus       387 ~~~~l~~al~rl~~~l~~  404 (409)
T PLN00143        387 EQSSLEDGLGRLKSFCGR  404 (409)
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence              5666777777777653

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.95  E-value=6.9e-26  Score=202.36  Aligned_cols=257  Identities=14%  Similarity=0.131  Sum_probs=172.4

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcc-cCCcEEEEecCC-------ChHHHHhhcC------CCceEEEEe
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP-KTGVVVKRVNTC-------DLDEVASAIG------PWTKLVWVE   67 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~-------d~~~l~~~l~------~~~~~v~~~   67 (307)
                      ++ .++.++++|||.|++++|.|+.+.    ..+. ..|++++.++.+       |++++++++.      .++++++++
T Consensus       123 al~~l~~~l~~pGd~Vlv~~P~Y~~~~----~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~  198 (468)
T PLN02450        123 ANETLMFCLAEPGDAFLLPTPYYPGFD----RDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLIT  198 (468)
T ss_pred             HHHHHHHHhCCCCCEEEECCCCCCchH----HHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEe
Confidence            44 345567899999999999998886    3344 579999998863       5678887764      378999999


Q ss_pred             CCCCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-----Cc------------cCCCccEEEeccccccccCC
Q 021783           68 SPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RP------------LELGADIVMHSATKFIAGHS  127 (307)
Q Consensus        68 ~~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~------------~~~~~d~~~~s~~K~~~g~~  127 (307)
                      +|+||||.+++   +++|+++|++||+++|+|++|+...+.     ..            ...+..++++||||.+ +.+
T Consensus       199 nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~-~l~  277 (468)
T PLN02450        199 NPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDL-GLP  277 (468)
T ss_pred             cCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccC-CCC
Confidence            99999999997   778899999999999999999732111     10            1235689999999999 678


Q ss_pred             CceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhcccc-------HHHHHHHHHHHHHHHHHHHhcCCCccEEec
Q 021783          128 DVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-------MALRVEKQQDNAQKIAEFLASHPRVKKVNY  200 (307)
Q Consensus       128 g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  200 (307)
                      |+|+||++++++.+.+.........  ..+...+.++...++.       +....+.+.+..+.+.+.|++. ++     
T Consensus       278 GlRiG~li~~~~~l~~~~~~~~~~~--~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~-gi-----  349 (468)
T PLN02450        278 GFRVGAIYSNDEMVVSAATKMSSFG--LVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA-GI-----  349 (468)
T ss_pred             CccEEEEEECCHHHHHHHHHHhhcC--CCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc-CC-----
Confidence            9999999998766555544443222  2344445554444432       2333444555555566666543 11     


Q ss_pred             CCCCCCCchHHHhhhccCCCceEEEEeCCH------HHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHH
Q 021783          201 AGLPEHPGHELHYSQAKGAGSVLSFLTGSL------ALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ  273 (307)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~  273 (307)
                         .      ..  . ...+.++|+.++..      +...++.+.+ ...||.+.+|..|..                  
T Consensus       350 ---~------~~--~-~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~------------------  399 (468)
T PLN02450        350 ---K------CL--K-SNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHC------------------  399 (468)
T ss_pred             ---c------cc--C-CCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCC------------------
Confidence               0      00  1 11344777776421      1223444444 457999999886431                  


Q ss_pred             hcCCCCCeEEEEecc---CChHHHHHHHHHHHhcC
Q 021783          274 ARGLTEDLVRISVGI---EDVNDLISDLDKALRTG  305 (307)
Q Consensus       274 ~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~~  305 (307)
                         ..++++||+++.   +++++.+++|.+++++.
T Consensus       400 ---~~~g~~Rl~f~~~~~~~l~~~l~ri~~~l~~~  431 (468)
T PLN02450        400 ---TEPGWFRVCFANMSEETLDLAMKRLKSFVESD  431 (468)
T ss_pred             ---CCCCEEEEEecCCCHHHHHHHHHHHHHHHHhc
Confidence               135789999984   56777788888877654

>PRK12414 putative aminotransferase; Provisional

Probab=99.95  E-value=4e-26  Score=200.18  Aligned_cols=243  Identities=16%  Similarity=0.148  Sum_probs=162.2

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG~   75 (307)
                      |+ .++.++++|||+|++++|+|..+.    ..++..|++++.++.+      |++++++.++++++++++++|+||||.
T Consensus       102 al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~  177 (384)
T PRK12414        102 GLYAAISALVHPGDEVIYFEPSFDSYA----PIVRLQGATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHNPSAT  177 (384)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCccchH----HHHHHcCCEEEEEecCccccccCHHHHHhhcCcccEEEEEcCCCCCCCc
Confidence            44 445567899999999999998876    5566679999888863      679999999888999999999999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-----Cc----cCCCccEEEeccccccccCCCceeEEEEEcChhHHH
Q 021783           76 ICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        76 ~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~----~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~  143 (307)
                      +++   +++|+++|++||+++|+|++|....+.     ..    ...+..++++||||.+ |.+|+|+||++++++ +.+
T Consensus       178 ~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-~~pGlRiG~~v~~~~-l~~  255 (384)
T PRK12414        178 VFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSY-HVTGWRVGYCLAPAE-LMD  255 (384)
T ss_pred             CCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccc-cCccceEEEEecCHH-HHH
Confidence            974   888899999999999999999732211     11    1124679999999999 678999999999855 444


Q ss_pred             HHHHHHHhcCCCCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCC
Q 021783          144 ELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG  220 (307)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  220 (307)
                      .+...........+...+.++...++.   .....+.+.++.+.+.+.|+... + .+ .              ++ ..+
T Consensus       256 ~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~-~~-~--------------~~-~gg  317 (384)
T PRK12414        256 EIRKVHQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGSR-F-EL-L--------------PS-EGS  317 (384)
T ss_pred             HHHHHHhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhCC-C-ee-c--------------CC-Ccc
Confidence            455544433333344444444444422   22223344555555666665431 1 00 0              11 123


Q ss_pred             ceEEEEeCC---HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc
Q 021783          221 SVLSFLTGS---LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  288 (307)
Q Consensus       221 ~~~~~~~~~---~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~  288 (307)
                      .+++++++.   ....+.+.+.+...||.+.+|..|..                   .+..++++||+++.
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~-------------------~~~~~~~iRis~~~  369 (384)
T PRK12414        318 FFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYT-------------------DGTDTGLIRLSFSK  369 (384)
T ss_pred             eEEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhcC-------------------CCCCCCEEEEEecC
Confidence            444446642   22234444566778999998876421                   12235789999996

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.95  E-value=1.3e-26  Score=204.50  Aligned_cols=260  Identities=23%  Similarity=0.211  Sum_probs=174.7

Q ss_pred             hcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHH
Q 021783           10 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA   83 (307)
Q Consensus        10 ~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~   83 (307)
                      .++|||+|++++++|++....+...++..|++++.++.+      |++++++.++++++++++++++||||...|+++|.
T Consensus       100 ~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~i~  179 (397)
T TIGR01976       100 RWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSPRTRLVAVTAASNTLGSIVDLAAIT  179 (397)
T ss_pred             cCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCCHHHHH
Confidence            368999999999999988877777778899999998763      68999999998999999999999999999999999


Q ss_pred             HHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH---------HhcC
Q 021783           84 EMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ---------NAEG  153 (307)
Q Consensus        84 ~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~---------~~~~  153 (307)
                      ++|+++|+++++|++|+.+..+ +..++++|++++|+||++ |++   +|+++++++.+........         +...
T Consensus       180 ~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~-g~~---~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~  255 (397)
T TIGR01976       180 ELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFF-GPH---MGILWGRPELLMNLPPYKLTFSYDTGPERFEL  255 (397)
T ss_pred             HHHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEechhhc-CCc---eEEEEEcHHHHhhCCCccccCccCCCcchhcC
Confidence            9999999999999999877655 666678999999999998 553   8999998664432211100         0111


Q ss_pred             CCCChhhHHHHhhccccHHH---------------HHHHHHH----HHHHHHHHHhcCCCccEEecCCCCCCCchHHHhh
Q 021783          154 SGLAPFDCWICLRGVKTMAL---------------RVEKQQD----NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS  214 (307)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~~---------------~~~~~~~----~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~  214 (307)
                      ++.+.........+++.+..               .+++..+    ..+.+.+.++..+.              +++..+
T Consensus       256 gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~--------------~~~~~~  321 (397)
T TIGR01976       256 GTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPG--------------VTLYGV  321 (397)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCC--------------EEEeCC
Confidence            11221111122222222111               0222233    33333333433221              222111


Q ss_pred             -hccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCC--CCeEEEEeccCCh
Q 021783          215 -QAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT--EDLVRISVGIEDV  291 (307)
Q Consensus       215 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~iRis~~~~~~  291 (307)
                       .+...++++.+.+++.. ...+.+.|..+||.++.|..+..              ......+.+  .+++|||++..+.
T Consensus       322 ~~~~~~~~~~~~~~~~~~-~~~l~~~L~~~gI~v~~~~~~~~--------------~~~~~~~~~~~~~~iRis~~~~~t  386 (397)
T TIGR01976       322 ARLAARVPTVSFTVHGLP-PQRVVRRLADQGIDAWAGHFYAV--------------RLLRRLGLNDEGGVVRVGLAHYNT  386 (397)
T ss_pred             CCccCCCceEEEEeCCcC-HHHHHHHHHHCCeEEEeCccchH--------------HHHHHhCCCCCCCeEEEEeeccCC
Confidence             11224668888876543 66788888889999988765321              011222332  4689999998888


Q ss_pred             HHHHHHHHHHH
Q 021783          292 NDLISDLDKAL  302 (307)
Q Consensus       292 ~~~i~~l~~~l  302 (307)
                      ++.++.|.++|
T Consensus       387 ~~di~~l~~~l  397 (397)
T TIGR01976       387 AEEVDRLLEAL  397 (397)
T ss_pred             HHHHHHHHHhC
Confidence            88888887754

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.95  E-value=5.8e-26  Score=201.21  Aligned_cols=257  Identities=17%  Similarity=0.132  Sum_probs=166.7

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-------CChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.++.+|||+|++++|+|+.+.    ..+...|++++.++.       .|++++++.++++++++++++|+||||
T Consensus       129 al~l~~~~l~~~Gd~Vlv~~P~y~~y~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG  204 (430)
T PLN00145        129 AIEIIMSVLAQPGANILLPRPGYPLYE----ARAVFSGLEVRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPCG  204 (430)
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCCccHH----HHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCceEEEEeCCCCCCC
Confidence            45 344457799999999999998877    556778899988875       278999999988999999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-----C---ccCCCccEEEeccccccccCCCceeEEEEEcC-hhHH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----R---PLELGADIVMHSATKFIAGHSDVMAGVLAVKG-ERLA  142 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-----~---~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~-~~~~  142 (307)
                      .+++   +++|+++|+++|+++|+|++|....+.     .   .......++++|+||.+ +.+|.|+||+++.+ +.+.
T Consensus       205 ~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~pG~RlG~iv~~~~~~~~  283 (430)
T PLN00145        205 SVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRW-VVPGWRLGWIATCDPNGIL  283 (430)
T ss_pred             CCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEecccccc-CCCCeeEEEEEEecchhhh
Confidence            9997   788899999999999999999732211     1   12234689999999999 67899999999842 2222


Q ss_pred             HH---HHHHHHh--cCCCCChhhHHHHhhcccc-----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHH
Q 021783          143 KE---LYFLQNA--EGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  212 (307)
Q Consensus       143 ~~---~~~~~~~--~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~  212 (307)
                      ..   .......  .....+...+.++...++.     ++...+.+.++.+.+.+.|++.+.+              ..+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~--------------~~~  349 (430)
T PLN00145        284 KETKVVDSIRNYLNISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCI--------------TCP  349 (430)
T ss_pred             hhhHHHHHHHHHhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--------------CCC
Confidence            21   1122111  1222333444444444432     3333444555555555555543211              111


Q ss_pred             hhhccCCCceEEEEeCC-----HHHHHHHH-hcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEe
Q 021783          213 YSQAKGAGSVLSFLTGS-----LALSKHVV-ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  286 (307)
Q Consensus       213 ~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~  286 (307)
                      . . ...+.+++++++.     ..+..++. ..++++||.+.+|..|.                       .++++|||+
T Consensus       350 ~-~-P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg-----------------------~~~~lRis~  404 (430)
T PLN00145        350 H-K-PEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALG-----------------------MKNWLRITF  404 (430)
T ss_pred             c-C-CCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccC-----------------------CCCeEEEEe
Confidence            0 1 1235666666642     11234444 44566789888887632                       257899999


Q ss_pred             cc--CChHHHHHHHHHHHh
Q 021783          287 GI--EDVNDLISDLDKALR  303 (307)
Q Consensus       287 ~~--~~~~~~i~~l~~~l~  303 (307)
                      +.  +.+++.+++|.++++
T Consensus       405 ~~~~~~l~~al~rl~~~~~  423 (430)
T PLN00145        405 AIDPPSLEDGLERLKSFCL  423 (430)
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            86  345555555565554

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.95  E-value=7.3e-26  Score=199.50  Aligned_cols=256  Identities=20%  Similarity=0.218  Sum_probs=176.0

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++++||+|++++|+|..+.    ..++..|++++.++.+       |++++++.++++++++++++|+||||
T Consensus       103 a~~~~~~~~~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG  178 (393)
T PRK05764        103 ALYNAFMALLDPGDEVIIPAPYWVSYP----EMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTG  178 (393)
T ss_pred             HHHHHHHHhcCCCCEEEecCCCCcchH----HHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCccceEEEEECCCCCCC
Confidence            44 344557899999999999998877    5667889999999874       57899999988899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCcC--------C--ccCCCccEEEeccccccccCCCceeEEEEEcChhH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS--------R--PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~--------~--~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~  141 (307)
                      .+++   +++|.++|++||+++++|++|+.....        .  ....+.+++++|+||.+ +.+|+|+||++.+++ +
T Consensus       179 ~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RiG~i~~~~~-~  256 (393)
T PRK05764        179 AVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAY-AMTGWRLGYAAGPKE-L  256 (393)
T ss_pred             cccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccc-cCccceeEEEecCHH-H
Confidence            9975   889999999999999999999743211        1  22346789999999999 667999999998744 5


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhcc
Q 021783          142 AKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  217 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~  217 (307)
                      .+.+...........+...++.+...++.    ++...+...++...+.+.|++.++              +.+.  .+ 
T Consensus       257 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g--------------~~~~--~~-  319 (393)
T PRK05764        257 IKAMSKLQSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEIPG--------------LECP--KP-  319 (393)
T ss_pred             HHHHHHHHhhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhCCC--------------Cccc--CC-
Confidence            55555555444444555555555555431    222233344445555555654322              1111  11 


Q ss_pred             CCCceEEEEeCCHH-----HHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--C
Q 021783          218 GAGSVLSFLTGSLA-----LSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--E  289 (307)
Q Consensus       218 ~~~~~~~~~~~~~~-----~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~  289 (307)
                      ..+.++++.+....     ...++.+.+ ++.||.+.+|..|.                       .++++|||++.  +
T Consensus       320 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~-----------------------~~~~vRis~~~~~~  376 (393)
T PRK05764        320 EGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFG-----------------------APGYVRLSYATSLE  376 (393)
T ss_pred             CcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccC-----------------------CCCEEEEEecCCHH
Confidence            12345566664321     135666555 56799998887632                       14679999975  6


Q ss_pred             ChHHHHHHHHHHHhc
Q 021783          290 DVNDLISDLDKALRT  304 (307)
Q Consensus       290 ~~~~~i~~l~~~l~~  304 (307)
                      ++++.++.|.++++.
T Consensus       377 ~~~~~i~~l~~~~~~  391 (393)
T PRK05764        377 DLEEGLERIERFLES  391 (393)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            777778888877754

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.95  E-value=5.3e-26  Score=199.73  Aligned_cols=247  Identities=15%  Similarity=0.097  Sum_probs=163.9

Q ss_pred             HHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcccccc
Q 021783            6 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         6 ~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~   78 (307)
                      ++..+++|||+|++++|+|+.+.    ..++..|++++.++.+       |++++++.+.+++++|++++|+||||.+++
T Consensus       109 ~~~~~~~~gd~Vl~~~P~y~~~~----~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~  184 (385)
T PRK09276        109 IPLAFVNPGDVVLVPDPGYPVYK----IGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVAD  184 (385)
T ss_pred             HHHHhCCCCCEEEEcCCCCcChH----HHHHHcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCCCCCCC
Confidence            34457899999999999998887    5567789999988763       578888888888999999999999999997


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCccCCCCc-----CC---cc-CCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH
Q 021783           79 ---IRKIAEMAHAHGALLLVDNSIMSPVL-----SR---PL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  146 (307)
Q Consensus        79 ---~~~l~~~~~~~~~~li~D~a~~~~~~-----~~---~~-~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~  146 (307)
                         +++|+++|++||+++|+|++|.....     ..   .. ..+.+++++||||.+ |.+|+|+||++++++ +.+.+.
T Consensus       185 ~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~i~~~~-l~~~~~  262 (385)
T PRK09276        185 LEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTY-NMTGWRIGFAVGNAD-LIAGLG  262 (385)
T ss_pred             HHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhc-CCcchhheeeeCCHH-HHHHHH
Confidence               68899999999999999999973221     11   11 124679999999999 678999999998755 545555


Q ss_pred             HHHHhcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCce
Q 021783          147 FLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV  222 (307)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  222 (307)
                      ..........+...+..+...+..    ++...+.+.++.+.+.+.|++. ++              .+.  .+ ..+.+
T Consensus       263 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~--------------~~~--~~-~~~~~  324 (385)
T PRK09276        263 KVKSNVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRKL-GL--------------EVE--PP-KATFY  324 (385)
T ss_pred             HHHhhccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhC-CC--------------ccc--CC-CcceE
Confidence            444333333333344444444432    2222333344455555555542 11              011  11 12445


Q ss_pred             EEEEeCCHHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHH
Q 021783          223 LSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL  298 (307)
Q Consensus       223 ~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l  298 (307)
                      +++.+++..+..++.+.+ +.+||.+.+|..|..                     ..++++|||++. +-+++.+.+
T Consensus       325 ~~v~~~~~~~~~~l~~~ll~~~gi~v~~g~~f~~---------------------~~~~~~Ris~~~-~~~~l~~~l  379 (385)
T PRK09276        325 VWAPVPKGYTSAEFATLLLDKAGVVVTPGNGFGE---------------------YGEGYFRIALTV-PDERIEEAV  379 (385)
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCEEECCchhhCC---------------------CCCCeEEEEeCC-CHHHHHHHH
Confidence            677775433366677765 457999998876321                     124689999985 334444433

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.95  E-value=5.6e-26  Score=196.97  Aligned_cols=238  Identities=19%  Similarity=0.147  Sum_probs=163.8

Q ss_pred             HHHHHhcCCC---CeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            5 AAVTHLLGTG---EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         5 ~~~~~~~~~g---d~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      .++.+++++|   |+|++++|+|+.+.    ..++..|++++.++.+       |++++++++.++++++++++|+||||
T Consensus        75 ~~~~~~~~~g~~~d~Vl~~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG  150 (350)
T TIGR03537        75 HFPLVFIDPEEDRRRVIFGTPGYPVYE----RGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTG  150 (350)
T ss_pred             HHHHHHcCCCCCCceEEEcCCCCcchH----HHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcC
Confidence            3445577877   69999999999888    6678899999999873       68899998888899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCcC----Ccc--CCCccEEEeccccccccCCCceeEEEEEcChhHHHHH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  145 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~----~~~--~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~  145 (307)
                      .+++   +++|+++|++||+++|+|++|+.....    ...  ..+..++++|+||.+ |.+|+|+||++.+++ +.+.+
T Consensus       151 ~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-g~~GlRiG~~~~~~~-~~~~~  228 (350)
T TIGR03537       151 ATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRS-GMTGYRSGFVAGDEK-LISFL  228 (350)
T ss_pred             cccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcCCEEEEeeccccc-CCccccceeeecCHH-HHHHH
Confidence            9998   889999999999999999999743211    111  234679999999999 668999999987644 54555


Q ss_pred             HHHHHhcCCCCChhhHHHHhhccc---cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCce
Q 021783          146 YFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV  222 (307)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  222 (307)
                      .......+...+...+..+...+.   ......+.+.++...+.+.++... +        .      +.  . ...+.+
T Consensus       229 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~~g-~--------~------~~--~-~~g~~~  290 (350)
T TIGR03537       229 RKLRANFGVASPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNKVG-L--------E------YL--Y-PDATFY  290 (350)
T ss_pred             HHHHHhhccCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHCC-C--------c------cc--C-CCeEEE
Confidence            544433333333233333323322   233334445555555666665431 1        0      00  1 112445


Q ss_pred             EEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec
Q 021783          223 LSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG  287 (307)
Q Consensus       223 ~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~  287 (307)
                      +++.+++.....++.+.|..+||.+..|..|...                     .++++||+++
T Consensus       291 ~~~~~~~~~~~~~l~~~L~~~gv~v~~g~~f~~~---------------------~~~~~Ri~~~  334 (350)
T TIGR03537       291 LWVKVPSGIDAKDYALRLLENGIVVAPGENFGSG---------------------EEGYVRVALV  334 (350)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCEEEcCchhhCCC---------------------CCCEEEEEec
Confidence            6777765434678888888889999988764310                     2467999997

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.95  E-value=1.1e-25  Score=197.44  Aligned_cols=252  Identities=15%  Similarity=0.142  Sum_probs=167.4

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-------CChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++++||+|++++|+|+.+.    ..++..|++++.++.       .|++++++.++++++++++++|+||||
T Consensus       101 al~~~~~~~~~~gd~vlv~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG  176 (384)
T PRK06348        101 GMYLALQSILDPGDEVIIHEPYFTPYK----DQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPTG  176 (384)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCCcchH----HHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeCCCCCCC
Confidence            44 344567899999999999999888    566777889888874       267999998888899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCc-----C--CccC-CCccEEEeccccccccCCCceeEEEEEcChhHHH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVL-----S--RPLE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~-----~--~~~~-~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~  143 (307)
                      .+++   +++|.++|+++|+++|+|++|.....     +  .... .+..++++||||.+ +.+|+|+||++++++ +.+
T Consensus       177 ~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~l~GlRiG~~v~~~~-~~~  254 (384)
T PRK06348        177 AVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDF-AMTGWRIGYVIAPDY-IIE  254 (384)
T ss_pred             cCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhcc-CCccccceeeecCHH-HHH
Confidence            9996   78899999999999999999974321     1  1111 35789999999999 667999999999754 555


Q ss_pred             HHHHHHHhcCCCCChhhHHHHhhccccH----HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCC
Q 021783          144 ELYFLQNAEGSGLAPFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  219 (307)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (307)
                      .+...........+...+..+...+...    +...+.+.++.+.+.+.|+..+.+              .+.  .+ ..
T Consensus       255 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~--------------~~~--~p-~g  317 (384)
T PRK06348        255 TAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIESIPNL--------------SLH--PP-KG  317 (384)
T ss_pred             HHHHHHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCc--------------eec--cC-Ce
Confidence            5555554333334444444444444322    222333344445555555533211              111  11 12


Q ss_pred             CceEEEEeCC-HHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHH
Q 021783          220 GSVLSFLTGS-LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD  297 (307)
Q Consensus       220 ~~~~~~~~~~-~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~  297 (307)
                      +.++|+.++. ..+..++.+.+ +..||.+.+|..|..                     ..++++||+++. +.+.+.+.
T Consensus       318 g~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~---------------------~~~~~iRi~~~~-~~~~l~~a  375 (384)
T PRK06348        318 SIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGE---------------------SGEGYIRLACTV-GIEVLEEA  375 (384)
T ss_pred             eEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhcc---------------------CCCCeEEEEecC-CHHHHHHH
Confidence            4455677752 22356677665 457999998876431                     025689999985 44444444


Q ss_pred             HH
Q 021783          298 LD  299 (307)
Q Consensus       298 l~  299 (307)
                      +.
T Consensus       376 l~  377 (384)
T PRK06348        376 FN  377 (384)
T ss_pred             HH
Confidence            43

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.95  E-value=9e-26  Score=197.67  Aligned_cols=263  Identities=24%  Similarity=0.246  Sum_probs=181.6

Q ss_pred             HHHHHhcC---CCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCcccc
Q 021783            5 AAVTHLLG---TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQI   76 (307)
Q Consensus         5 ~~~~~~~~---~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~   76 (307)
                      .++.++..   +||+|++++++|++....+...++..|++++.++.+     |++++++.+.+++++|++++++||||..
T Consensus        76 ~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~  155 (373)
T cd06453          76 LVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTI  155 (373)
T ss_pred             HHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcCCceEEEEeCcccccCCc
Confidence            34445555   899999999999987766667777889999999874     8899999999899999999999999999


Q ss_pred             ccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHh----
Q 021783           77 CDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA----  151 (307)
Q Consensus        77 ~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~----  151 (307)
                      .|+++|.++|+++|+++++|++|+.+..+ +....++|++++|++|++++ .|  +|+++++++.+.. +......    
T Consensus       156 ~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~-~g--~g~~~~~~~~~~~-~~~~~~g~~~~  231 (373)
T cd06453         156 NPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLGP-TG--IGVLYGKEELLEE-MPPYGGGGEMI  231 (373)
T ss_pred             CCHHHHHHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEeccccccCC-CC--cEEEEEchHHhhc-CCCeecCCCcc
Confidence            99999999999999999999999988765 55567899999999999965 56  8999998664432 2211100    


Q ss_pred             -----------------cCCCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCch
Q 021783          152 -----------------EGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGH  209 (307)
Q Consensus       152 -----------------~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~  209 (307)
                                       ...+++.........+++     .++...++..+..+.+.+.+++.+.+. +           
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~-~-----------  299 (373)
T cd06453         232 EEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVR-V-----------  299 (373)
T ss_pred             ccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeE-E-----------
Confidence                             001111111112222222     223333444555556666665554321 1           


Q ss_pred             HHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccC
Q 021783          210 ELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE  289 (307)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~  289 (307)
                        ..+ +...+++++|.+++.+ ..++.+.|..+||.++.|..+.   .|           .....| .++++|+|++..
T Consensus       300 --~~~-~~~~~~~~~~~~~~~~-~~~i~~~l~~~gi~i~~g~~~~---~~-----------~~~~~~-~~~~iRis~~~~  360 (373)
T cd06453         300 --YGD-AEDRAGVVSFNLEGIH-PHDVATILDQYGIAVRAGHHCA---QP-----------LMRRLG-VPGTVRASFGLY  360 (373)
T ss_pred             --eCC-ccccCCeEEEEECCcC-HHHHHHHHHHCCEEeccCccch---hH-----------HHHHhC-CCCeEEEEecCC
Confidence              101 1123568888887543 6788888888999988776522   11           011122 256899999998


Q ss_pred             ChHHHHHHHHHHH
Q 021783          290 DVNDLISDLDKAL  302 (307)
Q Consensus       290 ~~~~~i~~l~~~l  302 (307)
                      +.++.++.|.++|
T Consensus       361 ~t~~di~~~~~~l  373 (373)
T cd06453         361 NTEEEIDALVEAL  373 (373)
T ss_pred             CCHHHHHHHHhhC
Confidence            8888888887764

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK07550 hypothetical protein; Provisional

Probab=99.95  E-value=3.7e-26  Score=200.75  Aligned_cols=252  Identities=16%  Similarity=0.129  Sum_probs=169.3

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++++||+|++++|+|+.+.    ..++..|++++.++.+       |++++++.++++++++++++|+||||
T Consensus       102 al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~P~NPtG  177 (386)
T PRK07550        102 AFWAAMVTLAGAGDEVILPLPWYFNHK----MWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTG  177 (386)
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeCCCCCCC
Confidence            45 344457899999999999998887    5567899999999873       67889999988899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCc-----CCc----cCCCccEEEeccccccccCCCceeEEEEEcChhHH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVL-----SRP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  142 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~-----~~~----~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~  142 (307)
                      .+++   +++|+++|++||+++|+|++|+....     ...    ...+..++++|+||.+ |.+|+|+||++++++ +.
T Consensus       178 ~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~i~~~~~-~~  255 (386)
T PRK07550        178 VVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSY-ALTGHRVGAVVASPA-RI  255 (386)
T ss_pred             cccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhc-cCcccceEeeecCHH-HH
Confidence            9986   88999999999999999999863211     111    1123578899999999 667899999999755 44


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHhhccccHHHH----HHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          143 KELYFLQNAEGSGLAPFDCWICLRGVKTMALR----VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      +.+...........+...+..+...++.+...    .+.+.++.+.+.+.++....+              .+   . ..
T Consensus       256 ~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~--------------~~---~-~~  317 (386)
T PRK07550        256 AEIEKFMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARLPGW--------------EL---L-AS  317 (386)
T ss_pred             HHHHHHHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--------------ee---C-CC
Confidence            44444443333334445555555555443222    233444555555666543211              00   0 11


Q ss_pred             CCceEEEEeCC-HHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccC---ChHH
Q 021783          219 AGSVLSFLTGS-LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE---DVND  293 (307)
Q Consensus       219 ~~~~~~~~~~~-~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~---~~~~  293 (307)
                      .+.++|+.++. ..+..++.+.+ +++||.+.+|..|..                     ..++++||+++..   ++++
T Consensus       318 g~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~---------------------~~~~~iRis~~~~~~~~~~~  376 (386)
T PRK07550        318 GAYFAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFGP---------------------GQEGYLRLAFANADVAGIGE  376 (386)
T ss_pred             ceEEEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhhCC---------------------CCCCEEEEEeecCCHHHHHH
Confidence            35566777653 23467787775 567999999886421                     0256899999863   3334


Q ss_pred             HHHHHH
Q 021783          294 LISDLD  299 (307)
Q Consensus       294 ~i~~l~  299 (307)
                      .++.|.
T Consensus       377 ~~~~l~  382 (386)
T PRK07550        377 LVERLR  382 (386)
T ss_pred             HHHHHH
Confidence            444443

>PLN02656 tyrosine transaminase

Probab=99.95  E-value=9.5e-26  Score=199.21  Aligned_cols=256  Identities=13%  Similarity=0.104  Sum_probs=168.4

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++++||+|++++|+|+.+.    ..++..|++++.++.+       |++++++.++++++++++++|+||||
T Consensus       108 al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG  183 (409)
T PLN02656        108 AIDVALSMLARPGANILLPRPGFPIYE----LCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCG  183 (409)
T ss_pred             HHHHHHHHHhCCCCeEEEeCCCCCcHH----HHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCCCC
Confidence            44 344557899999999999998776    4456689999988862       67899998888899999999999999


Q ss_pred             ccc---cHHHHHHHHHHcCCEEEEeCccCCCCcC--------CccCCCccEEEeccccccccCCCceeEEEEEcC-----
Q 021783           75 QIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS--------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKG-----  138 (307)
Q Consensus        75 ~~~---~~~~l~~~~~~~~~~li~D~a~~~~~~~--------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~-----  138 (307)
                      .++   ++++|+++|+++|+++|+|++|....+.        ........++++||||.| +.+|+|+||+++++     
T Consensus       184 ~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f-~~pGlRiG~~i~~~~~~~~  262 (409)
T PLN02656        184 NVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRW-IVPGWRLGWFVTTDPSGSF  262 (409)
T ss_pred             CCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhc-cCcceeEEEEEEeCccccc
Confidence            997   4889999999999999999999732211        112234689999999998 57899999999853     


Q ss_pred             --hhHHHHHHHHHHhcCCCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHH
Q 021783          139 --ERLAKELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL  211 (307)
Q Consensus       139 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~  211 (307)
                        +.+.+.+....... ...+...+..+...++     .+....+.+.++.+.+.+.|+..+..              ..
T Consensus       263 ~~~~~~~~~~~~~~~~-~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~--------------~~  327 (409)
T PLN02656        263 RDPKIVERIKKYFDIL-GGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCI--------------TC  327 (409)
T ss_pred             ccHHHHHHHHHHHhhh-cCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCC--------------cC
Confidence              34444444433322 2234444554444443     23333444455555555656543211              00


Q ss_pred             HhhhccCCCceEEEEeCCH------HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEE
Q 021783          212 HYSQAKGAGSVLSFLTGSL------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS  285 (307)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis  285 (307)
                      + .. ...+.++|+.++..      +..+.+.+.+.+.||.+.+|..|.                       .++++||+
T Consensus       328 ~-~~-p~gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg-----------------------~~~~iRi~  382 (409)
T PLN02656        328 P-HK-PEGSMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVG-----------------------LKNWLRIT  382 (409)
T ss_pred             C-cC-CCeEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcC-----------------------CCCeEEEE
Confidence            0 01 11345666666411      112334566677899998887632                       14679999


Q ss_pred             ecc--CChHHHHHHHHHHHh
Q 021783          286 VGI--EDVNDLISDLDKALR  303 (307)
Q Consensus       286 ~~~--~~~~~~i~~l~~~l~  303 (307)
                      ++.  +.+++.+++|.+.+.
T Consensus       383 ~~~~~e~l~eal~rl~~~~~  402 (409)
T PLN02656        383 FAADPSSLEEALGRIKSFYL  402 (409)
T ss_pred             eCCCHHHHHHHHHHHHHHHH
Confidence            996  445555666666554

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=2.2e-26  Score=199.44  Aligned_cols=246  Identities=17%  Similarity=0.214  Sum_probs=167.4

Q ss_pred             HHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCC-CceEEEEeCCCCCccccccH
Q 021783            6 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP-WTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         6 ~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~~   79 (307)
                      ++.+++++||+|++++|+|+.+.    ..++..|++++.++.+     |++++++++++ +++++++++|+||||.+++.
T Consensus        92 ~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~  167 (351)
T PRK14807         92 IMLAFINKGDVVIYPHPSFAMYS----VYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIER  167 (351)
T ss_pred             HHHHhcCCCCEEEEeCCChHHHH----HHHHHcCCeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCH
Confidence            34457899999999999998665    5567889999999864     67899999874 89999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCC---c-CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCC
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPV---L-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  155 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~---~-~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~  155 (307)
                      +++.+++++++.++|+|++|....   . +.....+..++++||||.+ |.+|+|+||++.+++ +.+.+......  ..
T Consensus       168 ~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~~GlRiG~~v~~~~-~~~~~~~~~~~--~~  243 (351)
T PRK14807        168 EDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAF-GLAGLRVGYAVANEN-ILKYLNLVKSP--YN  243 (351)
T ss_pred             HHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchHhc-ccchhceeeeecCHH-HHHHHHHccCC--CC
Confidence            999999999888999999996321   1 1122345789999999999 778999999998754 54444443321  22


Q ss_pred             CChhhHHHHhhcccc--HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHH
Q 021783          156 LAPFDCWICLRGVKT--MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALS  233 (307)
Q Consensus       156 ~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (307)
                      .+...+..+...++.  +....+...++.+.+.+.+++.+++              .+.    ...++++++++++   .
T Consensus       244 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~~g~--------------~~~----~~~~~~~~i~~~~---~  302 (351)
T PRK14807        244 INSLSQVIALKVLRTGVLKERVNYILNERERLIKELSKIPGI--------------KVY----PSKTNFILVKFKD---A  302 (351)
T ss_pred             cCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCc--------------EEC----cCCccEEEEEcCC---H
Confidence            344444444444432  2233333444444555555433221              111    1136677777764   4


Q ss_pred             HHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHH
Q 021783          234 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKAL  302 (307)
Q Consensus       234 ~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l  302 (307)
                      ..+.+.+.++||.++.+...                     . ..++++|||++. ++.+++++.|++++
T Consensus       303 ~~~~~~l~~~gV~v~~~~~~---------------------~-~~~~~iRis~~~~~~~~~l~~~l~~~~  350 (351)
T PRK14807        303 DYVYQGLLERGILVRDFSKV---------------------E-GLEGALRITVSSCEANDYLINGLKELL  350 (351)
T ss_pred             HHHHHHHHHCCEEEEECCCC---------------------C-CCCCeEEEEcCCHHHHHHHHHHHHHhh
Confidence            56677777778887643210                     0 125679999986 56677777776653

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.95  E-value=7.2e-26  Score=197.48  Aligned_cols=251  Identities=17%  Similarity=0.153  Sum_probs=169.6

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcC-------CCceEEEEeCCC
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG-------PWTKLVWVESPT   70 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~-------~~~~~v~~~~~~   70 (307)
                      .++.+++++||+|+++.++|++.+    ..++..|++++.++.+       |++++++.++       +++++|++++|+
T Consensus        81 ~~~~~l~~~gd~Vl~~~~~h~s~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~  156 (370)
T TIGR02539        81 AVMHALCKEGDWVVLDGLAHYTSY----VAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVD  156 (370)
T ss_pred             HHHHHhhCCCCEEEECCcccHHHH----HHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCC
Confidence            556678899999999999987776    4567889999999975       8999999885       268899999999


Q ss_pred             CCccccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           71 NPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        71 n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                      ||+|...|+++|.++|+++|+++++|++|+.|..+ ....++.|++++|+||++++  +.++|+++++++.+ +.+....
T Consensus       157 ~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s~sK~~~~--~g~~G~l~~~~~~i-~~l~~~~  233 (370)
T TIGR02539       157 GEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAA--SGPCGVLGMSEEWE-DIVLRKS  233 (370)
T ss_pred             CCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEeeCcccccC--CCCEEEEEECHHHH-hhhcccc
Confidence            99999999999999999999999999999988654 55566899999999999953  33489999986544 3333322


Q ss_pred             Hhc--------CCCCChhhHHHHhhccccHHHH---HHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          150 NAE--------GSGLAPFDCWICLRGVKTMALR---VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       150 ~~~--------~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      ...        +.............+++.....   +.+..++.+.+.+.|+... + .+.  +.  .          +.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~~L~~~g-~-~~~--~~--~----------~s  297 (370)
T TIGR02539       234 RYSPVKEVELLGCTSRGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVAELEDIG-F-IQL--GQ--K----------PK  297 (370)
T ss_pred             cCCccceeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-c-EEE--cc--C----------CC
Confidence            211        0111111222223333221222   2333444556666666542 1 000  00  0          11


Q ss_pred             CCceEEEEeCCH--------HHHHHHHhcCCcceee-cCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEe--c
Q 021783          219 AGSVLSFLTGSL--------ALSKHVVETTKYFSIT-VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV--G  287 (307)
Q Consensus       219 ~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~-v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~--~  287 (307)
                      .++++.+.++..        .....+.+.|.++||. +++|.                           ++++|+|+  +
T Consensus       298 ~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~~~---------------------------~~~iRis~~~~  350 (370)
T TIGR02539       298 EHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRSGQ---------------------------TKYFKLSVYGL  350 (370)
T ss_pred             cCceEEEECCchhHHhhhhccccHHHHHHHHhCCCccccCCc---------------------------ceEEEEEecCC
Confidence            356777766432        1234688888888985 44311                           34699997  3


Q ss_pred             -cCChHHHHHHHHHHHhcC
Q 021783          288 -IEDVNDLISDLDKALRTG  305 (307)
Q Consensus       288 -~~~~~~~i~~l~~~l~~~  305 (307)
                       .++++++++.|++.+++.
T Consensus       351 t~e~i~~l~~~L~~~~~~~  369 (370)
T TIGR02539       351 TKEQVEYVVDSFEEIVEEY  369 (370)
T ss_pred             CHHHHHHHHHHHHHHHHhc
Confidence             378888888888877653

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.95  E-value=5.3e-26  Score=200.59  Aligned_cols=262  Identities=18%  Similarity=0.153  Sum_probs=167.0

Q ss_pred             cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHH
Q 021783           11 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM   85 (307)
Q Consensus        11 ~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~   85 (307)
                      .++||+|+++.++|+++...+.. ++..|++++.++.+     |++++++.++++++++++++++||||...|+++|.++
T Consensus        89 ~~~g~~Vi~~~~~h~s~~~~~~~-~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~l  167 (402)
T TIGR02006        89 KSKGNHIITSKTEHKAVLDTCRY-LEREGFEVTYLPPKSNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEI  167 (402)
T ss_pred             cCCCCEEEECCCccHHHHHHHHH-HHhcCCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHHH
Confidence            37899999999999988776654 35579999999863     7999999999889999999999999999999999999


Q ss_pred             HHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH------HhcCCCCCh
Q 021783           86 AHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ------NAEGSGLAP  158 (307)
Q Consensus        86 ~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~------~~~~~~~~~  158 (307)
                      |+++|+++++|++|+.|..+ +...+++|++++|+||++ ||+|  .|+++++++..........      .....+...
T Consensus       168 ~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~-gp~G--~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~  244 (402)
T TIGR02006       168 CRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIY-GPKG--IGALYVRRKPRVRLEALIHGGGHERGMRSGTLPT  244 (402)
T ss_pred             HHHcCCEEEEEcchhcCCcccCccccCCCEEEEehhhhc-CCCc--eEEEEEccCCCCCCCceecCCCccCCccCCCccH
Confidence            99999999999999999877 777789999999999987 7888  8999888653322111110      011112222


Q ss_pred             hhHHHHhhccccHHH----HHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCc--eEEEEeCCHHH
Q 021783          159 FDCWICLRGVKTMAL----RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS--VLSFLTGSLAL  232 (307)
Q Consensus       159 ~~~~~~~~~l~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  232 (307)
                      ........+++.+..    ..++..+..+.+.+.++..+.+ .+.-             +......+  .+.|.  ..+ 
T Consensus       245 ~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~v-~~~~-------------~~~~~~p~~~~v~f~--~~~-  307 (402)
T TIGR02006       245 HQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKSIEEV-YLNG-------------DLEHRVPGNLNVSFN--YVE-  307 (402)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCE-EEeC-------------CccccCCCeEEEEEe--CcC-
Confidence            222222233333222    2233334444444444443322 1110             00001122  34444  222 


Q ss_pred             HHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCC----CCeEEEEeccCChHHHHHHHHHHHh
Q 021783          233 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRISVGIEDVNDLISDLDKALR  303 (307)
Q Consensus       233 ~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~iRis~~~~~~~~~i~~l~~~l~  303 (307)
                      ...+...+  .++.++.|..++..        ...++....+.|..    .+++|+|++..++++.++.|.++|+
T Consensus       308 ~~~~~~~l--~~i~v~~G~~c~~~--------~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~  372 (402)
T TIGR02006       308 GESLIMAL--KDLAVSSGSACTSA--------SLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVK  372 (402)
T ss_pred             HHHHHHhc--CCEEEechhhcCCC--------CCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHH
Confidence            34555555  47888888773321        01122234445543    4899999998555555555555543

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.95  E-value=1.1e-25  Score=204.05  Aligned_cols=255  Identities=15%  Similarity=0.162  Sum_probs=165.4

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~   77 (307)
                      .++.+++++||+|++++|+|+.+.    ..++..|++++.++.+       |++++++.++++++++++++|+||||.++
T Consensus       223 ~~~~~l~~~Gd~Vli~~P~y~~y~----~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i~i~nP~NPTG~v~  298 (517)
T PRK13355        223 LSMSALLDDGDEVLIPSPDYPLWT----ACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVIINPNNPTGALY  298 (517)
T ss_pred             HHHHHhCCCCCEEEEcCCCCcCHH----HHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCc
Confidence            344568899999999999998887    5677889999988752       78999999999999999999999999999


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCccCCCCc-----CCccCC--C-ccEEEeccccccccCCCceeEEEEEcC-hhH----
Q 021783           78 D---IRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLEL--G-ADIVMHSATKFIAGHSDVMAGVLAVKG-ERL----  141 (307)
Q Consensus        78 ~---~~~l~~~~~~~~~~li~D~a~~~~~~-----~~~~~~--~-~d~~~~s~~K~~~g~~g~~~G~~~~~~-~~~----  141 (307)
                      +   +++|+++|++||++||+|++|..-.+     ......  + ..++++||||.+ +.+|+|+||++++. ..+    
T Consensus       299 ~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~-~~~G~RiG~~i~~~~~~~~~~~  377 (517)
T PRK13355        299 PREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSH-MIAGYRIGWMILSGNKRIAKDY  377 (517)
T ss_pred             CHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhc-cCcccceEEEEeeCchhhHHHH
Confidence            7   88999999999999999999973221     111111  1 346679999999 67899999999642 222    


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHhhcccc---HHHHH---HHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhh
Q 021783          142 AKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRV---EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ  215 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  215 (307)
                      .+.+.... ......+...+.++..++..   +....   .+..+..+.+.+.|++.              +++.+.  .
T Consensus       378 ~~~l~~~~-~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~--------------~g~~~~--~  440 (517)
T PRK13355        378 IEGLNMLA-NMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRELVYNALNAI--------------PGISAV--K  440 (517)
T ss_pred             HHHHHHHh-cCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcC--------------CCcccC--C
Confidence            22222111 11122333445555444432   11211   22233334444444432              222211  1


Q ss_pred             ccCCCceEEE-EeCCH-----HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-
Q 021783          216 AKGAGSVLSF-LTGSL-----ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-  288 (307)
Q Consensus       216 ~~~~~~~~~~-~~~~~-----~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-  288 (307)
                      +  .++++.| +++..     +....+.+.|.+.||.+.+|..|..                     ..++++|||+.. 
T Consensus       441 p--~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~---------------------~~~~~~Ris~~~~  497 (517)
T PRK13355        441 P--KAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNW---------------------DKPDHFRVVYLPR  497 (517)
T ss_pred             C--CeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCC---------------------CCcCEEEEEeCCC
Confidence            1  2444444 66421     2234455667788999998876421                     136789999964 


Q ss_pred             -CChHHHHHHHHHHHhc
Q 021783          289 -EDVNDLISDLDKALRT  304 (307)
Q Consensus       289 -~~~~~~i~~l~~~l~~  304 (307)
                       +.+++.+++|.++++.
T Consensus       498 ~~~l~~a~~rl~~~~~~  514 (517)
T PRK13355        498 LEDLEDAMDRLADFFSY  514 (517)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence             5667777777777754

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.95  E-value=6.9e-26  Score=198.63  Aligned_cols=257  Identities=19%  Similarity=0.209  Sum_probs=171.6

Q ss_pred             HHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC--------CChHHHHhhcCCCceEEEEeCCCCCccccc
Q 021783            6 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIGPWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         6 ~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~--------~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~   77 (307)
                      ++.+++++||+|++++|+|..+.    ..++..|++++.++.        .|++++++.++++++++++++|+||||.++
T Consensus        99 ~~~~~~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~  174 (380)
T PRK06225         99 VMRAFLSPGDNAVTPDPGYLIID----NFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSY  174 (380)
T ss_pred             HHHHhcCCCCEEEEcCCCCcchH----HHHHHhCceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCCCCCCCcCC
Confidence            44457889999999999998766    556788999998875        267899999988899999999999999987


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCccCC---CCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHH
Q 021783           78 D---IRKIAEMAHAHGALLLVDNSIMS---PVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  150 (307)
Q Consensus        78 ~---~~~l~~~~~~~~~~li~D~a~~~---~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~  150 (307)
                      +   +++|.++|+++|+++|+|++|..   +... .....+..+++.||||++ |++|+|+|+++++++ +.+.+.....
T Consensus       175 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~-g~~G~RiG~i~~~~~-l~~~~~~~~~  252 (380)
T PRK06225        175 TEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIF-GMAGLRIGAVVATPD-LIEVVKSIVI  252 (380)
T ss_pred             CHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhc-CCccceeEEEecCHH-HHHHHHHHHh
Confidence            5   88999999999999999999852   2111 111225679999999999 778999999999855 4444443332


Q ss_pred             hcCCCCChhhHHHHhhcccc---HHHHH-HHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEE
Q 021783          151 AEGSGLAPFDCWICLRGVKT---MALRV-EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  226 (307)
Q Consensus       151 ~~~~~~~~~~~~~~~~~l~~---~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  226 (307)
                       .....+...+..+...+..   +..+. +...++...+.+.|++.+++              .+.. . ...++++++.
T Consensus       253 -~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~--------------~~~~-~-~~~g~~~~~~  315 (380)
T PRK06225        253 -NDLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDEIEGV--------------FLPV-Y-PSHGNMMVID  315 (380)
T ss_pred             -cccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcCC--------------cccc-C-CCCCeEEEEE
Confidence             1222333333333333322   11111 11223333344455433211              0000 1 1236677887


Q ss_pred             eCC-HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHh
Q 021783          227 TGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALR  303 (307)
Q Consensus       227 ~~~-~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~  303 (307)
                      +.. ..+..++.+.+.++||.+++|..+.                    ...+++++|+|++.  +++++.++.|++.++
T Consensus       316 ~~~~~~~~~~l~~~l~~~gi~v~~g~~~~--------------------~~~~~~~iR~s~~~~~e~l~~~~~~l~~~~~  375 (380)
T PRK06225        316 ISEAGIDPEDLVEYLLERKIFVRQGTYTS--------------------KRFGDRYIRVSFSIPREQVEVFCEEFPDVVE  375 (380)
T ss_pred             cccccCCHHHHHHHHHHCCEEEcCCcccC--------------------cCCCCceEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            743 1246778888888899998876421                    01135689999987  678888888888886


Q ss_pred             cC
Q 021783          304 TG  305 (307)
Q Consensus       304 ~~  305 (307)
                      ++
T Consensus       376 ~~  377 (380)
T PRK06225        376 TL  377 (380)
T ss_pred             Hh
Confidence            54

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.95  E-value=2.1e-25  Score=197.35  Aligned_cols=256  Identities=14%  Similarity=0.109  Sum_probs=169.5

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++++||+|++++|+|+.+.    ..++..|++++.++.+       |++++++.+.++++++++++|+||||
T Consensus       116 al~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG  191 (412)
T PTZ00433        116 AILMALTALCDEGDNILVPAPGFPHYE----TVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIMTNPSNPCG  191 (412)
T ss_pred             HHHHHHHHhcCCCCEEEEccCCcccHH----HHHHHcCCEEEEEecCccccCcCCHHHHHHHhccCceEEEEeCCCCCCC
Confidence            44 345567899999999999998887    6678889999988862       68899988888899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCc-----C---CccCCCccEEEeccccccccCCCceeEEEEEcC-----
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVL-----S---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKG-----  138 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~-----~---~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~-----  138 (307)
                      .+++   +++|+++|+++|+++|+|++|.....     .   ........++++||||.+ |.+|+|+||+++.+     
T Consensus       192 ~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-~~pGlRlG~~i~~~p~~~~  270 (412)
T PTZ00433        192 SNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNL-VVPGWRLGWLLLVDPHGNG  270 (412)
T ss_pred             cccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhc-CCCCeeEEEEEEeCCcccH
Confidence            9886   77889999999999999999973221     1   111112468999999999 67899999999731     


Q ss_pred             hhHHHHHHHHHHhcCCCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHh
Q 021783          139 ERLAKELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  213 (307)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~  213 (307)
                      +.+.+.+...... ....+...+..+...+.     .+....+.+.++.+.+.+.|++...+              ... 
T Consensus       271 ~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~--------------~~~-  334 (412)
T PTZ00433        271 GDFLDGMKRLGML-VCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGL--------------SPT-  334 (412)
T ss_pred             HHHHHHHHHHhhc-cCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCC--------------ccc-
Confidence            2233333333221 12233444443333332     12223334445555555555533211              000 


Q ss_pred             hhccCCCceEEEEeCCH-----HHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec
Q 021783          214 SQAKGAGSVLSFLTGSL-----ALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG  287 (307)
Q Consensus       214 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~  287 (307)
                       . ...+.+++++++..     ....++.+.+. .+||.+.+|..|.                       .++++||+++
T Consensus       335 -~-p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~-----------------------~~~~iRis~~  389 (412)
T PTZ00433        335 -M-PRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFH-----------------------MPGFTRLTIS  389 (412)
T ss_pred             -C-CCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccC-----------------------CCCeEEEEec
Confidence             1 11356677777531     13567777775 5799998887642                       1457999998


Q ss_pred             c--CChHHHHHHHHHHHhc
Q 021783          288 I--EDVNDLISDLDKALRT  304 (307)
Q Consensus       288 ~--~~~~~~i~~l~~~l~~  304 (307)
                      .  +++++.++.|.++++.
T Consensus       390 ~~~e~l~~al~~l~~~~~~  408 (412)
T PTZ00433        390 RPVEVLREAVERIKAFCER  408 (412)
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            6  4566677777776653

>PRK02948 cysteine desulfurase; Provisional

Probab=99.95  E-value=1.5e-25  Score=196.70  Aligned_cols=266  Identities=17%  Similarity=0.166  Sum_probs=175.7

Q ss_pred             CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHH
Q 021783           12 GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA   86 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~   86 (307)
                      ++||+|++++.+|+++...+. .++..|++++.++.+     |++++++.+++++++|++++++||||.+.|+++|.++|
T Consensus        86 ~~g~~vv~~~~~h~s~~~~~~-~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~  164 (381)
T PRK02948         86 QNKKHIITTPMEHASIHSYFQ-SLESQGYTVTEIPVDKSGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALL  164 (381)
T ss_pred             CCCCEEEECCcccHHHHHHHH-HHHhCCCEEEEEeeCCCCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhHHHHHHHH
Confidence            679999999999988876664 456789999999863     78999999988899999999999999999999999999


Q ss_pred             HHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH----HHHhcCCCCChhhH
Q 021783           87 HAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF----LQNAEGSGLAPFDC  161 (307)
Q Consensus        87 ~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  161 (307)
                      +++|+++++|++++.|..+ +..++++|++++|+||++ ||+|  .|+++++++........    .......+.+....
T Consensus       165 ~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~-gp~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~  241 (381)
T PRK02948        165 KKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIY-GPKG--VGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGI  241 (381)
T ss_pred             HHcCCEEEEEChhhccccccCcccCCCCEEEecHHhcC-CCCc--EEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHH
Confidence            9999999999999988765 667789999999999987 6888  89998886531111100    00011222333333


Q ss_pred             HHHhhccccH----HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHH
Q 021783          162 WICLRGVKTM----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVV  237 (307)
Q Consensus       162 ~~~~~~l~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (307)
                      ..+..+++.+    ....++..+..+.+.+.++... + .+...+   .+.        .....++.|.+.+.+ ..++.
T Consensus       242 ~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~-~v~~~~---~~~--------~~~~~i~~~~~~~~~-~~~~~  307 (381)
T PRK02948        242 AAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLP-L-PIEVEG---HST--------SCLPHIIGVTIKGIE-GQYTM  307 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C-CEEEeC---CCc--------cCcCCEEEEEeCCCC-HHHHH
Confidence            3333333322    3333444555555555555442 1 111110   000        112446677776544 56677


Q ss_pred             hcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCC----CCCeEEEEeccCChHHHHHHHHHHHh
Q 021783          238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL----TEDLVRISVGIEDVNDLISDLDKALR  303 (307)
Q Consensus       238 ~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~iRis~~~~~~~~~i~~l~~~l~  303 (307)
                      ..|..+||.++.|..++.   +     ...++.+..+.|.    ..+++|+|++..+.++.++.|.++|+
T Consensus       308 ~~l~~~gI~v~~g~~c~~---~-----~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~  369 (381)
T PRK02948        308 LECNRRGIAISTGSACQV---G-----KQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALE  369 (381)
T ss_pred             HhcccCCEEEEchHhcCC---C-----CCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHH
Confidence            788889999998886321   1     1113334444443    24789999997555555555554443

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=3.2e-26  Score=200.20  Aligned_cols=245  Identities=16%  Similarity=0.195  Sum_probs=168.1

Q ss_pred             HHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhc-CCCceEEEEeCCCCCccccccH
Q 021783            6 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAI-GPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         6 ~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l-~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      ++.+++++||+|++++|+|+.+.    ..++..|++++.++.+     |++++++.+ .++++++++++|+||||..++.
T Consensus       119 ~~~~~~~~gd~Vlv~~P~y~~y~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~  194 (380)
T PLN03026        119 LMRCVLDPGDKIIDCPPTFGMYV----FDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISD  194 (380)
T ss_pred             HHHHhcCCCCEEEEcCCChHHHH----HHHHHcCCEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCCH
Confidence            33456799999999999997665    5567789999998763     689999988 6789999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCc-----CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCC
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS  154 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~  154 (307)
                      +++.++++.. +++|+|++|.....     ......+..++++||||.+ |.+|+|+||++++++.+ +.+.....  ..
T Consensus       195 ~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~-glaGlRiGy~~~~~~~i-~~l~~~~~--~~  269 (380)
T PLN03026        195 DDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRA-GLAGLRVGYGAFPLSII-EYLWRAKQ--PY  269 (380)
T ss_pred             HHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhh-cCccccceeeecCHHHH-HHHHHhcC--CC
Confidence            9999999865 89999999963211     1222346789999999999 78999999999985544 44433332  12


Q ss_pred             CCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHH
Q 021783          155 GLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA  231 (307)
Q Consensus       155 ~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (307)
                      ..+...+..+.++++.   ++...+.+.+..+.+.+.|+....+ .. .                ...++++++++++..
T Consensus       270 ~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-~----------------p~~~~f~~~~~~~~~  331 (380)
T PLN03026        270 NVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEVPFL-EP-Y----------------PSDANFILCRVTSGR  331 (380)
T ss_pred             CCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-eE-C----------------CCCCeEEEEECCCCC
Confidence            3344445555555532   2233334444555555556543211 00 1                124678888876422


Q ss_pred             HHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHH
Q 021783          232 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDK  300 (307)
Q Consensus       232 ~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~  300 (307)
                      ...++.+.|..+||.++++..                      .+ .++++|||++. ++++++++.|++
T Consensus       332 ~~~~~~~~l~~~gI~v~~~~~----------------------~~-~~~~lRis~~~~~~~~~l~~al~~  378 (380)
T PLN03026        332 DAKKLKEDLAKMGVMVRHYNS----------------------KE-LKGYIRVSVGKPEHTDALMEALKQ  378 (380)
T ss_pred             CHHHHHHHHHHCCeEEEECCC----------------------CC-CCCEEEEecCCHHHHHHHHHHHHH
Confidence            366788888788998876542                      01 25689999995 355666666654

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.95  E-value=2e-26  Score=201.24  Aligned_cols=248  Identities=16%  Similarity=0.205  Sum_probs=170.8

Q ss_pred             HHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHH
Q 021783            7 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKI   82 (307)
Q Consensus         7 ~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l   82 (307)
                      +.+++++||+|++++|+|..+.    ..++..|++++.++.+    |++++++.+++++++|++++|+||||.+++.+++
T Consensus       101 ~~~l~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l  176 (367)
T PRK02731        101 ARAYLGPGDEVIYSEHGFAVYP----IAAQAVGAKPVEVPAKDYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEV  176 (367)
T ss_pred             HHHhcCCCCEEEEecCCHHHHH----HHHHHcCCeEEEecccCCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCCHHHH
Confidence            3457889999999999996655    4456789999999864    7899999998889999999999999999999999


Q ss_pred             HHHHHHc--CCEEEEeCccCCCCcC--------CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhc
Q 021783           83 AEMAHAH--GALLLVDNSIMSPVLS--------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE  152 (307)
Q Consensus        83 ~~~~~~~--~~~li~D~a~~~~~~~--------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~  152 (307)
                      .++++.+  |+++|+|++|......        ........++++|+||.+ |.+|+|+||++++++ +.+.+...... 
T Consensus       177 ~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~l~~~~~-~~~~l~~~~~~-  253 (367)
T PRK02731        177 ERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAY-GLAGLRVGYGIAPPE-IIDALNRVRQP-  253 (367)
T ss_pred             HHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhh-cCcccceeeeeCCHH-HHHHHHHccCC-
Confidence            9999875  8999999998633211        111224679999999999 678999999999854 44444333221 


Q ss_pred             CCCCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC
Q 021783          153 GSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  229 (307)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (307)
                       ...+...+..+...++.   ++...+...++.+.+.+.+++.. +              ...    ...++++++.+++
T Consensus       254 -~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~--------------~~~----~~~g~~~~i~~~~  313 (367)
T PRK02731        254 -FNVNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAELG-L--------------EYI----PSVGNFILVDFDD  313 (367)
T ss_pred             -CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC-C--------------ccC----CCCceEEEEECCC
Confidence             12334445555444442   12222233333444444454331 1              000    1136788888854


Q ss_pred             HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHhc
Q 021783          230 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALRT  304 (307)
Q Consensus       230 ~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~~  304 (307)
                      .....++.+.|.++||.++.+..+.                       .++++|||++. ++++.+++.|.++++.
T Consensus       314 ~~~~~~~~~~L~~~gI~v~~~~~~~-----------------------~~~~iRis~~~~~e~~~l~~aL~~~~~~  366 (367)
T PRK02731        314 GKDAAEAYQALLKRGVIVRPVAGYG-----------------------LPNALRITIGTEEENRRFLAALKEFLAA  366 (367)
T ss_pred             CCCHHHHHHHHHHCCEEEEeCCCCC-----------------------CCCeEEEecCCHHHHHHHHHHHHHHHhc
Confidence            4447788888888899998765421                       14579999985 6778888888777653

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.95  E-value=2.6e-26  Score=206.58  Aligned_cols=260  Identities=14%  Similarity=0.102  Sum_probs=165.9

Q ss_pred             HH-HHHHHhc-CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCC------CceEEEEe
Q 021783            3 AL-AAVTHLL-GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGP------WTKLVWVE   67 (307)
Q Consensus         3 al-~~~~~~~-~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~------~~~~v~~~   67 (307)
                      |+ .++.+++ +|||+|++++|+|+.+.    ..++..|++++.++.+       |++++++++++      ++++++++
T Consensus       150 al~~~~~~l~~~~gD~Vlv~~P~y~~y~----~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~  225 (481)
T PTZ00377        150 GIKLLLQLLIGDPSDGVMIPIPQYPLYS----AAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVI  225 (481)
T ss_pred             HHHHHHHHhccCCCCEEEECCCCchhHH----HHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEE
Confidence            44 3444567 79999999999999888    6677889999998863       67899888863      78999999


Q ss_pred             CCCCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCc------CCc----cCC-------CccEEEeccccccccCC
Q 021783           68 SPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL------SRP----LEL-------GADIVMHSATKFIAGHS  127 (307)
Q Consensus        68 ~~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~------~~~----~~~-------~~d~~~~s~~K~~~g~~  127 (307)
                      +|+||||.+++   +++|+++|++||++||+|++|..-.+      ...    ..+       ...++++||||.+.+.+
T Consensus       226 ~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~  305 (481)
T PTZ00377        226 NPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGEC  305 (481)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCC
Confidence            99999999997   88999999999999999999974221      110    011       14689999999855788


Q ss_pred             CceeEEEEE--cChhHHHHHHHHHHhcCCCCChhhHHHHhhcccc----------HHHHHH----HHHHHHHHHHHHHhc
Q 021783          128 DVMAGVLAV--KGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----------MALRVE----KQQDNAQKIAEFLAS  191 (307)
Q Consensus       128 g~~~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~----~~~~~~~~l~~~l~~  191 (307)
                      |+|+||+++  .++.+.+.+....... ...+...+.++...++.          +...++    .+.++.+.+.+.|++
T Consensus       306 GlRiG~~~~~~~p~~li~~l~~~~~~~-~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~  384 (481)
T PTZ00377        306 GRRGGYFELTNIPPEVREQIYKLASIN-LCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNK  384 (481)
T ss_pred             cCceEEEEEeCCCHHHHHHHHHHhhee-cCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999987  2455655555544322 12344445544444421          111111    123334444555543


Q ss_pred             CCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC--CH-----------HHHHHHHhcCCcceeecCCCCccceeec
Q 021783          192 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--SL-----------ALSKHVVETTKYFSITVSFGSVKSLISM  258 (307)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~~~~~~l~~~gi~v~~g~~~~~~~~  258 (307)
                      .+              ++.+.  .+ ..+.++++.+.  ..           .....+...+.+.||.+.+|..|...  
T Consensus       385 ~~--------------g~~~~--~p-~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~--  445 (481)
T PTZ00377        385 IE--------------GVSCQ--PV-EGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQK--  445 (481)
T ss_pred             CC--------------CcEee--cC-CeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCC--
Confidence            32              21111  11 12344443442  11           01122345566789999998875310  


Q ss_pred             ccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 021783          259 PCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  304 (307)
Q Consensus       259 p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  304 (307)
                                        ..++++|||++.  +++++.+++|.+++++
T Consensus       446 ------------------~~~~~~Rls~~~~~e~l~~~l~rl~~~~~~  475 (481)
T PTZ00377        446 ------------------PGTYHFRITILPPEEQIEEMVKKIKEFHES  475 (481)
T ss_pred             ------------------CCCCEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence                              124689999985  3567777777777653

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=1.5e-26  Score=201.12  Aligned_cols=245  Identities=20%  Similarity=0.236  Sum_probs=169.5

Q ss_pred             HHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcC-CCceEEEEeCCCCCccccccH
Q 021783            6 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG-PWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         6 ~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      ++.+++++||+|++++|+|+.+.    ..++..|++++.++.+     |++++++.+. .+++++++++|+||||.+++.
T Consensus        97 ~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~  172 (356)
T PRK04870         97 LALACAKPGATVLAPEPGFVMYR----MSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDD  172 (356)
T ss_pred             HHHHhcCCCCEEEECCCCHHHHH----HHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCH
Confidence            33456799999999999998776    6678899999999874     6899999986 589999999999999999998


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCC----cCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCC
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPV----LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  155 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~----~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~  155 (307)
                      +++.++++..++++|+|++|....    .+.....+..+++.|+|| + +.+|+|+||++++++.+ +.+.....  ...
T Consensus       173 ~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~-~~~GlRiG~~i~~~~~i-~~~~~~~~--~~~  247 (356)
T PRK04870        173 ADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-L-GLAGLRLGYLAGHPAWI-AELDKVRP--PYN  247 (356)
T ss_pred             HHHHHHHHHCCCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-h-hhHHHhhhhhhCCHHHH-HHHHHccC--CCc
Confidence            888888887789999999996321    112233456899999999 6 67899999999875543 33433321  122


Q ss_pred             CChhhHHHHhhccc---cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHH
Q 021783          156 LAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLAL  232 (307)
Q Consensus       156 ~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (307)
                      .+...+..+...++   .++...+.+.++.+.+.+.+++.+++ .+ .                ...++++++.+++   
T Consensus       248 ~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~-~----------------~~~~~~~~~~~~~---  306 (356)
T PRK04870        248 VNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAALPGV-TV-F----------------PSAANFILVRVPD---  306 (356)
T ss_pred             CCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCc-EE-C----------------CCCCeEEEEECCC---
Confidence            33333444333333   23333445555666666666544322 11 1                1136688888762   


Q ss_pred             HHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHH
Q 021783          233 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKA  301 (307)
Q Consensus       233 ~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~  301 (307)
                      ...+.+.+.++||.++.|..|.                     +..++++|||++. ++++++++.|.+.
T Consensus       307 ~~~~~~~l~~~gI~v~~~~~f~---------------------~~~~~~iRis~~~~~~~~~l~~al~~~  355 (356)
T PRK04870        307 AAAVFDGLKTRGVLVKNLSGMH---------------------PLLANCLRVTVGTPEENAQFLAALKAA  355 (356)
T ss_pred             HHHHHHHHHHCCEEEEECCCCC---------------------CCCCCeEEEeCCCHHHHHHHHHHHHHh
Confidence            4567788888999998776531                     0125689999985 5666666666554

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.95  E-value=2.1e-25  Score=196.85  Aligned_cols=254  Identities=14%  Similarity=0.076  Sum_probs=169.1

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~   77 (307)
                      .++.+++++||+|++++|+|+.+.    ..++..|++++.++.+       |++++++.++++++++++++|+||||.++
T Consensus       110 ~~~~~l~~~gd~v~i~~P~y~~~~----~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~  185 (401)
T TIGR01264       110 MCIAALANAGQNILVPRPGFPLYE----TLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALIVNNPSNPCGSVF  185 (401)
T ss_pred             HHHHHhCCCCCEEEEeCCCChhHH----HHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccCceEEEEcCCCCCCCCCC
Confidence            444567899999999999998777    6677889999888652       68899988888889999999999999998


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCccCCCCc-----C---CccCCCccEEEeccccccccCCCceeEEEEEcCh--h---H
Q 021783           78 D---IRKIAEMAHAHGALLLVDNSIMSPVL-----S---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE--R---L  141 (307)
Q Consensus        78 ~---~~~l~~~~~~~~~~li~D~a~~~~~~-----~---~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~--~---~  141 (307)
                      +   +++|+++|+++|+++|+|++|.....     .   ........++++||||.+ +.+|+|+||++++++  .   .
T Consensus       186 ~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~iv~~~~~~~~~~~  264 (401)
T TIGR01264       186 SRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRW-LVPGWRLGWIIIHDRRGILRDI  264 (401)
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccC-CCccceEEEEEecCcchhHHHH
Confidence            5   88899999999999999999973221     1   111112368999999998 678999999998752  1   2


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhc
Q 021783          142 AKELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  216 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~  216 (307)
                      .+.+..... .....+...+..+...+.     .++...+.+.++.+.+.+.|+..+++              ..  .. 
T Consensus       265 ~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~--------------~~--~~-  326 (401)
T TIGR01264       265 RDGLVKLSQ-RILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGL--------------RP--VM-  326 (401)
T ss_pred             HHHHHHHhh-ccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCC--------------cc--cC-
Confidence            222222221 112223333444333332     22333444455555566666543211              00  01 


Q ss_pred             cCCCceEEEEeCC-----HHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--
Q 021783          217 KGAGSVLSFLTGS-----LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--  288 (307)
Q Consensus       217 ~~~~~~~~~~~~~-----~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--  288 (307)
                      ...+.++++.++.     .....++.+.+ +.+||.+.+|..|.                       .++++||+++.  
T Consensus       327 p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~-----------------------~~~~iRis~~~~~  383 (401)
T TIGR01264       327 PSGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFE-----------------------YPGFFRVVLTVPV  383 (401)
T ss_pred             CCeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcC-----------------------CCCeEEEEEcCCH
Confidence            1246677777642     11245666665 46899998887532                       14679999986  


Q ss_pred             CChHHHHHHHHHHHhc
Q 021783          289 EDVNDLISDLDKALRT  304 (307)
Q Consensus       289 ~~~~~~i~~l~~~l~~  304 (307)
                      +++++.+++|.+.+++
T Consensus       384 ~~l~~~l~rl~~~~~~  399 (401)
T TIGR01264       384 VMMEEACSRIQEFCER  399 (401)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            5677778888887765

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK09265 aminotransferase AlaT; Validated

Probab=99.95  E-value=2.7e-25  Score=196.32  Aligned_cols=258  Identities=16%  Similarity=0.112  Sum_probs=168.0

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~   77 (307)
                      .++.+++++||+|++++|+|+.+.    ..++..|.+++.++.+       |++++++.++++++++++++|+||||.++
T Consensus       110 ~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~  185 (404)
T PRK09265        110 MAMQALLNNGDEVLVPAPDYPLWT----AAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVY  185 (404)
T ss_pred             HHHHHhCCCCCEEEEeCCCCcChH----HHHHHcCCEEEEEecccccCCCCCHHHHHHhccccceEEEEECCCCCCCcCC
Confidence            344557899999999999998877    5556678888877542       67889999888899999999999999999


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCccCCCCc-----CCc---cCCCccEEEeccccccccCCCceeEEEEEc-ChhHHH-H
Q 021783           78 D---IRKIAEMAHAHGALLLVDNSIMSPVL-----SRP---LELGADIVMHSATKFIAGHSDVMAGVLAVK-GERLAK-E  144 (307)
Q Consensus        78 ~---~~~l~~~~~~~~~~li~D~a~~~~~~-----~~~---~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~-~~~~~~-~  144 (307)
                      +   +++|+++|+++|+++|+|++|..-.+     ...   ......++++||||.+ +.+|+|+||++.+ ++...+ .
T Consensus       186 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~pGlRiG~~v~~~~~~~~~~~  264 (404)
T PRK09265        186 SKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAY-RVAGFRVGWMVLSGPKKHAKGY  264 (404)
T ss_pred             CHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhc-cCcccceEEEEEeCchHHHHHH
Confidence            8   88999999999999999999863211     111   1112468899999999 6689999999974 332211 1


Q ss_pred             HHHHH--HhcCCCCChhhHHHHhhcccc---HHHH---HHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhc
Q 021783          145 LYFLQ--NAEGSGLAPFDCWICLRGVKT---MALR---VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  216 (307)
Q Consensus       145 ~~~~~--~~~~~~~~~~~~~~~~~~l~~---~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~  216 (307)
                      .....  .......+...+.++...+..   ....   .+...++.+.+.+.|+..+              ++...  . 
T Consensus       265 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~--------------~~~~~--~-  327 (404)
T PRK09265        265 IEGLDMLASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAIP--------------GVSCV--K-  327 (404)
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCC--------------CCccc--C-
Confidence            11111  112223334444544444432   1111   1233344444555554322              11111  1 


Q ss_pred             cCCCceEEEEeCCH-----HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--C
Q 021783          217 KGAGSVLSFLTGSL-----ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--E  289 (307)
Q Consensus       217 ~~~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~  289 (307)
                      ...+.++++.++..     ...+.+.+.+..+||.+.+|..|..                     ..++++|++++.  +
T Consensus       328 p~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~---------------------~~~~~~Ri~~~~~~e  386 (404)
T PRK09265        328 PKGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNW---------------------PEPDHFRIVTLPRVD  386 (404)
T ss_pred             CCcceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCC---------------------CCCCeEEEEeCCCHH
Confidence            12355666677532     2345566778888999988876421                     125689999974  5


Q ss_pred             ChHHHHHHHHHHHhcC
Q 021783          290 DVNDLISDLDKALRTG  305 (307)
Q Consensus       290 ~~~~~i~~l~~~l~~~  305 (307)
                      .+++.+++|.+.++..
T Consensus       387 ~l~~~l~rl~~~l~~~  402 (404)
T PRK09265        387 DLEEAIGRIGRFLSGY  402 (404)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            6778888888887654

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.94  E-value=3.4e-25  Score=195.50  Aligned_cols=256  Identities=17%  Similarity=0.120  Sum_probs=170.4

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-------CChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++++||+|++++|+|+.+.    ..++..|++++.++.       .|++++++.+.++++++++++|+||||
T Consensus       108 al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG  183 (403)
T TIGR01265       108 AIEICIEALANPGANILVPRPGFPLYD----TRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEKTVAIVVINPSNPCG  183 (403)
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCchhHH----HHHHHcCCEEEEecCCcccCCccCHHHHHHHhCcCccEEEEecCCCCCC
Confidence            44 344557799999999999998766    556778999988865       268999998888899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCcC--------CccCCCccEEEeccccccccCCCceeEEEEEcCh--hH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS--------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE--RL  141 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~--------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~--~~  141 (307)
                      .+++   +++|.++|+++|+++|+|++|+.....        ........++++||||.+ +.+|+|+||+++.++  .+
T Consensus       184 ~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~pGlRiG~~v~~~~~~~~  262 (403)
T TIGR01265       184 SVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRW-VVPGWRLGWIIIHDPHGIF  262 (403)
T ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeeccccc-CCCcceEEEEEEeCchhhh
Confidence            9986   889999999999999999999733211        111223579999999998 567999999998532  22


Q ss_pred             H----HHHHHHHHhcCCCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHH
Q 021783          142 A----KELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  212 (307)
Q Consensus       142 ~----~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~  212 (307)
                      .    +.+...... ....+...+..+...++     .++...+++.++.+.+.+.|+..+++ .+.             
T Consensus       263 ~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~-------------  327 (403)
T TIGR01265       263 RDTVLQGLKNLLQR-ILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGL-VCP-------------  327 (403)
T ss_pred             HHHHHHHHHHHhhh-hcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCc-eec-------------
Confidence            2    222222211 12233344444443332     23334555566666666666654322 110             


Q ss_pred             hhhccCCCceEEEEeCCH-----HHHHHHHhc-CCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEe
Q 021783          213 YSQAKGAGSVLSFLTGSL-----ALSKHVVET-TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  286 (307)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~  286 (307)
                        . ...+.+++++++..     .+..++.+. ++..||.+.+|..|.                       .++++||++
T Consensus       328 --~-p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~-----------------------~~~~iRis~  381 (403)
T TIGR01265       328 --K-PEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFG-----------------------LPNWVRITI  381 (403)
T ss_pred             --C-CCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccC-----------------------CCCeEEEEe
Confidence              0 12467778877532     135567666 467899999887632                       156799999


Q ss_pred             cc--CChHHHHHHHHHHHhc
Q 021783          287 GI--EDVNDLISDLDKALRT  304 (307)
Q Consensus       287 ~~--~~~~~~i~~l~~~l~~  304 (307)
                      +.  +.+++.++.|.+++++
T Consensus       382 ~~~~~~l~~~l~~l~~~~~~  401 (403)
T TIGR01265       382 TVPESMLEEACSRIKEFCER  401 (403)
T ss_pred             cCCHHHHHHHHHHHHHHHHh
Confidence            86  3555556666665543

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK07337 aminotransferase; Validated

Probab=99.94  E-value=4.7e-25  Score=193.89  Aligned_cols=254  Identities=18%  Similarity=0.163  Sum_probs=166.2

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++..++++||+|++++|+|+++.    ..++..|++++.++.+       |++++++.++++++++++++|+||||
T Consensus       102 al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG  177 (388)
T PRK07337        102 ALLLACLALVERGDEVLMPDPSYPCNR----HFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTG  177 (388)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCchhhH----HHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCccceEEEEECCCCCCC
Confidence            44 344457899999999999999887    4556678899888863       67899999988999999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCcC----CccCC-CccEEEeccccccccCCCceeEEEEEcChhHHHHHH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RPLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  146 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~----~~~~~-~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~  146 (307)
                      .+++   +++|+++|+++++++|+|++|..-...    ..... +..++++|+||.+ |.+|+|+||++++++ +.+.+.
T Consensus       178 ~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~~G~RiG~~~~~~~-l~~~l~  255 (388)
T PRK07337        178 TSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKYF-NMTGWRLGWLVVPEA-LVGTFE  255 (388)
T ss_pred             cCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhccCCEEEEEechhhc-CCchhheeeeecCHH-HHHHHH
Confidence            9986   788899999999999999998632211    11122 3457899999999 678999999999855 444454


Q ss_pred             HHHHhcCCCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCc
Q 021783          147 FLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS  221 (307)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (307)
                      ..........+...+..+...+.     .+....+.+.++.+.+.+.|+... +              ..+. . ...+.
T Consensus       256 ~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~-~--------------~~~~-~-p~~g~  318 (388)
T PRK07337        256 KLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESLG-F--------------KVPV-M-PDGAF  318 (388)
T ss_pred             HHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhcC-C--------------cccc-C-CCeeE
Confidence            44433333333434444333332     122223334444455555555431 1              0000 1 12466


Q ss_pred             eEEEEeCCH-----HHHHHHHhc-CCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHH
Q 021783          222 VLSFLTGSL-----ALSKHVVET-TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLI  295 (307)
Q Consensus       222 ~~~~~~~~~-----~~~~~~~~~-l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i  295 (307)
                      +++++++..     .+..++.+. ++..||.+.+|..|..                    ...++++||+++. +.+.+.
T Consensus       319 f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~--------------------~~~~~~~Ri~~~~-~~~~l~  377 (388)
T PRK07337        319 YVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGP--------------------HAPRDYIRLSYAT-SMSRLE  377 (388)
T ss_pred             EEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCC--------------------CCCCCEEEEEecC-CHHHHH
Confidence            778877531     235566655 5678999998876431                    0125789999996 344444


Q ss_pred             HHHHH
Q 021783          296 SDLDK  300 (307)
Q Consensus       296 ~~l~~  300 (307)
                      +.+++
T Consensus       378 ~~l~r  382 (388)
T PRK07337        378 EAVAR  382 (388)
T ss_pred             HHHHH
Confidence            44433

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.94  E-value=2.2e-25  Score=196.23  Aligned_cols=244  Identities=18%  Similarity=0.173  Sum_probs=163.0

Q ss_pred             HH-HHHHHhcCCCCe--EEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCC
Q 021783            3 AL-AAVTHLLGTGEE--IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNP   72 (307)
Q Consensus         3 al-~~~~~~~~~gd~--Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~   72 (307)
                      |+ .++.++++|||+  |++++|+|+.+.    ..++..|++++.++.+       |++++++.+.++++++++++|+||
T Consensus       102 al~~~~~~l~~~gd~~~vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NP  177 (393)
T TIGR03538       102 ALFAFAQAVINPGQAPLVVMPNPFYQIYE----GAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNP  177 (393)
T ss_pred             HHHHHHHHHcCCCCcceEEecCCCCcchH----HHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcceEEEEeCCCCC
Confidence            44 344457899986  999999998877    5577889999999862       678888888778999999999999


Q ss_pred             cccccc---HHHHHHHHHHcCCEEEEeCccCCCCcC------C----c-----cCCCccEEEeccccccccCCCceeEEE
Q 021783           73 RQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS------R----P-----LELGADIVMHSATKFIAGHSDVMAGVL  134 (307)
Q Consensus        73 tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~------~----~-----~~~~~d~~~~s~~K~~~g~~g~~~G~~  134 (307)
                      ||.+++   +++|+++|++||++||+|++|......      .    .     ...+..++++|+||.+ +.+|+|+||+
T Consensus       178 tG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~-~~~GlRvG~~  256 (393)
T TIGR03538       178 TGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRS-NLPGLRSGFV  256 (393)
T ss_pred             cCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhc-CCcccceEEE
Confidence            999997   788999999999999999999732211      1    0     1234679999999988 6689999999


Q ss_pred             EEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccc---cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHH
Q 021783          135 AVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL  211 (307)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~  211 (307)
                      +++++ +.+.+...........+...+..+...+.   .++...+.+.+..+.+.+.|++.-   .+.            
T Consensus       257 i~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~---~~~------------  320 (393)
T TIGR03538       257 AGDAE-ILKAFLRYRTYHGCAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQVL---DLE------------  320 (393)
T ss_pred             ecCHH-HHHHHHHHHHhhccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhC---ccc------------
Confidence            98755 44444444443333334444444333332   233334444555555555555320   000            


Q ss_pred             HhhhccCCCceEEEEeCCHHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc
Q 021783          212 HYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  288 (307)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~  288 (307)
                         . ...+.+++++++ . ...++.+.+ +++||.+.+|..|......               .....+++|||++.
T Consensus       321 ---~-p~gg~f~~~~~~-~-~~~~~~~~l~~~~gV~v~pg~~f~~~~~~---------------~~~~~~~~Ris~~~  377 (393)
T TIGR03538       321 ---L-PDAGFYLWPKVP-G-DDEAFARALYEEENVTVLPGRFLAREAEG---------------VNPGEGRVRIALVA  377 (393)
T ss_pred             ---C-CCeeEEEEEECC-C-CHHHHHHHHHHHCCEEEeCCccccccccC---------------CCCCCCEEEEEecC
Confidence               1 124667777776 2 245677666 4579999999875321000               01125789999985

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=4e-26  Score=198.77  Aligned_cols=244  Identities=19%  Similarity=0.246  Sum_probs=168.6

Q ss_pred             HHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcCCCceEEEEeCCCCCccccccHHH
Q 021783            6 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRK   81 (307)
Q Consensus         6 ~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~   81 (307)
                      ++.+++++||+|++++|+|+.+.    ..+...|++++.++.+    |++++++.++++++++++++|+||||.+++.++
T Consensus        97 ~~~~~~~~gd~v~~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~  172 (359)
T PRK03158         97 ISRALLNPGTNTVMAEPTFSQYR----HNAIIEGAEVREVPLKDGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEE  172 (359)
T ss_pred             HHHHHhCCCCEEEEcCCCHHHHH----HHHHHcCCeEEEEecCCCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHH
Confidence            33457799999999999998776    5566789999999874    789999888889999999999999999999999


Q ss_pred             HHHHHHH--cCCEEEEeCccCCCCcC--------CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHh
Q 021783           82 IAEMAHA--HGALLLVDNSIMSPVLS--------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  151 (307)
Q Consensus        82 l~~~~~~--~~~~li~D~a~~~~~~~--------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~  151 (307)
                      +.++++.  +|+++|+|++|......        .....+.+++++||||.+ |.+|+|+||++++++ +.+.+......
T Consensus       173 l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~~v~~~~-~~~~~~~~~~~  250 (359)
T PRK03158        173 LLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAY-GLAALRVGYGIASEE-LIEKLNIARPP  250 (359)
T ss_pred             HHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhh-cCcchhhehhcCCHH-HHHHHHHhcCC
Confidence            9999887  59999999999643211        112346789999999999 678999999998755 44444433321


Q ss_pred             cCCCCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC
Q 021783          152 EGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  228 (307)
Q Consensus       152 ~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  228 (307)
                        ...+...+..+...++.   .+...+...+..+.+.+.+++. .+ .+ .                +..+.++++.+.
T Consensus       251 --~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~-~~-~----------------~~~g~~i~~~~~  309 (359)
T PRK03158        251 --FNTTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKEY-GL-FY-Y----------------PSQTNFIFVDTG  309 (359)
T ss_pred             --CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CC-ee-C----------------CCcCcEEEEECC
Confidence              23444555555555542   1122222333344444444432 11 00 0                113567777764


Q ss_pred             CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHH
Q 021783          229 SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKA  301 (307)
Q Consensus       229 ~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~  301 (307)
                      .  ...++.+.+.++||.+++|..|.                       .++++||+++. ++++++++.|+++
T Consensus       310 ~--~~~~~~~~l~~~gv~v~~g~~f~-----------------------~~~~iRi~~~~~~~~~~l~~al~~~  358 (359)
T PRK03158        310 R--DANELFEALLKKGYIVRSGAALG-----------------------FPTGVRITIGLKEQNDKIIELLKEL  358 (359)
T ss_pred             C--CHHHHHHHHHHCCeEEeeCCCCC-----------------------CCCeEEEecCCHHHHHHHHHHHHHh
Confidence            2  25667777777899999887632                       14679999985 6777777777664

>PRK08363 alanine aminotransferase; Validated

Probab=99.94  E-value=1.8e-25  Score=197.05  Aligned_cols=258  Identities=17%  Similarity=0.147  Sum_probs=166.3

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEe-cC------CChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV-NT------CDLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v-~~------~d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++++||+|++++|+|+.+.    ..++..|.+++.+ +.      .|++++++.+.++++++++++|+||||
T Consensus       105 al~~~~~~~~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG  180 (398)
T PRK08363        105 ALQLIFGALLDPGDEILIPGPSYPPYT----GLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTG  180 (398)
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCCcchH----HHHHHcCCEEEEeccccccCCcCCHHHHHhhCCcceEEEEEECCCCCCC
Confidence            44 344567899999999999999887    5667788888777 33      267889998888899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-------CccCCCccEEEeccccccccCCCceeEEEEE-cChhHHH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-------RPLELGADIVMHSATKFIAGHSDVMAGVLAV-KGERLAK  143 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~-~~~~~~~  143 (307)
                      .+++   +++|.++|+++|+++|+|++|+...+.       ........++++||||.+ +.+|+|.||+++ .++.+.+
T Consensus       181 ~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~~~~~~~~~~~~  259 (398)
T PRK08363        181 ALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVY-FATGWRLGYIYFVDPEGKLA  259 (398)
T ss_pred             cCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhcc-CCccceEEEEEEeCcHHHHH
Confidence            9987   889999999999999999999732211       111223578899999998 568999999998 2333333


Q ss_pred             HHHHH-HHh--cCCCCChhhHHHHhhccc----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhc
Q 021783          144 ELYFL-QNA--EGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  216 (307)
Q Consensus       144 ~~~~~-~~~--~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~  216 (307)
                      .+... ...  .....+...+..+...+.    .+....+.+.++.+.+.+.|+..+.+              .+.  . 
T Consensus       260 ~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~--------------~~~--~-  322 (398)
T PRK08363        260 EVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNEIPGI--------------STT--K-  322 (398)
T ss_pred             HHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhcCCCC--------------Eec--C-
Confidence            22221 111  111233333443333332    23333445555555666666543221              110  1 


Q ss_pred             cCCCceEEE-EeCC---HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CC
Q 021783          217 KGAGSVLSF-LTGS---LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--ED  290 (307)
Q Consensus       217 ~~~~~~~~~-~~~~---~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~  290 (307)
                       ..++++.| .+++   ....+.+...+..+||.+.+|..|..                     ..++++|||++.  ++
T Consensus       323 -p~g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~---------------------~~~~~iRis~~~~~~~  380 (398)
T PRK08363        323 -PQGAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGE---------------------YGAGHFRLVFLPPVEI  380 (398)
T ss_pred             -CCeEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCC---------------------CCCCeEEEEecCCHHH
Confidence             12445444 5653   12233334556788999988876421                     125689999974  45


Q ss_pred             hHHHHHHHHHHHhc
Q 021783          291 VNDLISDLDKALRT  304 (307)
Q Consensus       291 ~~~~i~~l~~~l~~  304 (307)
                      +++.++.|.+.+++
T Consensus       381 l~~~l~~l~~~~~~  394 (398)
T PRK08363        381 LEEAMDRFEEFMRE  394 (398)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66667777776653

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.94  E-value=3.3e-25  Score=195.64  Aligned_cols=260  Identities=20%  Similarity=0.193  Sum_probs=170.2

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC--------ChHHHHhhcCCCceEEEEeCCCCCc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--------DLDEVASAIGPWTKLVWVESPTNPR   73 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--------d~~~l~~~l~~~~~~v~~~~~~n~t   73 (307)
                      |+ .++..++++||+|++++|.|+.+.    ..++..|++++.++.+        +++++++++++++++|++++|+|||
T Consensus       100 al~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~p~NPt  175 (397)
T PRK07568        100 AILFAMMAICDPGDEILVPEPFYANYN----GFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGNPT  175 (397)
T ss_pred             HHHHHHHHhcCCCCEEEEecCCCccHH----HHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCccceEEEEECCCCCC
Confidence            44 344456899999999999998766    4566789999988862        3588999888889999999999999


Q ss_pred             ccccc---HHHHHHHHHHcCCEEEEeCccCCCC-----cC---CccC-CCccEEEeccccccccCCCceeEEEEEcChhH
Q 021783           74 QQICD---IRKIAEMAHAHGALLLVDNSIMSPV-----LS---RPLE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        74 G~~~~---~~~l~~~~~~~~~~li~D~a~~~~~-----~~---~~~~-~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~  141 (307)
                      |.+++   +++|+++|+++|+++|+|++|....     ..   .... .+..+++.|+||.+ +.+|+|+||++++++.+
T Consensus       176 G~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~~~~~~~~~  254 (397)
T PRK07568        176 GVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRY-SACGARIGCLISKNKEL  254 (397)
T ss_pred             CccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhc-cCCCcceEEEecCCHHH
Confidence            99985   7899999999999999999996321     11   1111 34679999999999 66799999999875555


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhcc
Q 021783          142 AKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  217 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~  217 (307)
                      .+.+...... ....+...+..+...++.    ++...+.+.++.+.+.+.|++.+.+ .+             .  .+ 
T Consensus       255 ~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~-------------~--~p-  316 (397)
T PRK07568        255 IAAAMKLCQA-RLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNKIPGV-VC-------------E--KP-  316 (397)
T ss_pred             HHHHHHHhhc-cCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc-ee-------------c--CC-
Confidence            5444333221 122333344444444432    2233344455555666666543211 00             0  11 


Q ss_pred             CCCceEEEEeCCHHHHHHHHhcCC------cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--C
Q 021783          218 GAGSVLSFLTGSLALSKHVVETTK------YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--E  289 (307)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~l~------~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~  289 (307)
                      ..+.+++++++.. ...++.+.+.      ..||.+.+|..|...                  .+.+++++|||++.  +
T Consensus       317 ~g~~~~~~~l~~~-~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~------------------~~~~~~~iRls~~~~~~  377 (397)
T PRK07568        317 KGAFYIIAKLPVD-DAEDFAKWLLTDFNYNGETVMVAPASGFYAT------------------PGLGKNEIRIAYVLNEE  377 (397)
T ss_pred             CcceEEEEecCCC-CHHHHHHHHHhhcccccceEEEeCchHhcCC------------------CCCCCCeEEEEEeCCHH
Confidence            1244567777532 2444444442      368988888764210                  12235789999974  6


Q ss_pred             ChHHHHHHHHHHHhc
Q 021783          290 DVNDLISDLDKALRT  304 (307)
Q Consensus       290 ~~~~~i~~l~~~l~~  304 (307)
                      ++++.++.|.+++++
T Consensus       378 ~~~~~~~~l~~~l~~  392 (397)
T PRK07568        378 DLKRAMEILKEALEK  392 (397)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777778888877764

>PRK07683 aminotransferase A; Validated

Probab=99.94  E-value=4.7e-25  Score=193.60  Aligned_cols=252  Identities=19%  Similarity=0.193  Sum_probs=165.5

Q ss_pred             HHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCcccccc-
Q 021783            6 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD-   78 (307)
Q Consensus         6 ~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~-   78 (307)
                      ++..++++||+|++++|+|+.+.    ..++..|++++.++.+      |.+++++.+.++++++++++|+||||.+++ 
T Consensus       105 ~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~p~NPtG~~~s~  180 (387)
T PRK07683        105 AFRTILEPGTEVILPAPIYPGYE----PIIRLCGAKPVFIDTRSTGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSK  180 (387)
T ss_pred             HHHHhCCCCCEEEEcCCCccchH----HHHHHcCCEEEEeecCcccCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCH
Confidence            44457899999999999998877    5566789999999864      568899988888999999999999999986 


Q ss_pred             --HHHHHHHHHHcCCEEEEeCccCCCCcC----Cc----cCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH
Q 021783           79 --IRKIAEMAHAHGALLLVDNSIMSPVLS----RP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  148 (307)
Q Consensus        79 --~~~l~~~~~~~~~~li~D~a~~~~~~~----~~----~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~  148 (307)
                        +++|+++|+++|+++|+|++|+.....    ..    ...+.+++++|+||.+ |.+|+|+||++++++ +.+.+...
T Consensus       181 ~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~pGlRiG~i~~~~~-l~~~~~~~  258 (387)
T PRK07683        181 EELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSH-SMTGWRIGFLFAPSY-LAKHILKV  258 (387)
T ss_pred             HHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccc-cCccceeEEEEcCHH-HHHHHHHH
Confidence              889999999999999999999743211    11    1224689999999999 667999999999865 44444433


Q ss_pred             HHhcCCCCChhhHHHHhhccc----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEE
Q 021783          149 QNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  224 (307)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  224 (307)
                      ........+...+..+...+.    ..+...+.+.++...+.+.++...         +.-.          ...++++.
T Consensus       259 ~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~----------~~~~~~~~  319 (387)
T PRK07683        259 HQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLISMG---------LDVE----------KPTGAFYL  319 (387)
T ss_pred             HHhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcC---------Cccc----------CCCeeEEE
Confidence            333333333334444333332    122223344455555555555321         1000          11244444


Q ss_pred             -EEeCC-HHHHHHHHhc-CCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHHHHH
Q 021783          225 -FLTGS-LALSKHVVET-TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLD  299 (307)
Q Consensus       225 -~~~~~-~~~~~~~~~~-l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~  299 (307)
                       ..+.. ......+..+ ++.+||.+.+|..|..                     ..++++||+++.  +++.+.+++|.
T Consensus       320 ~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~---------------------~~~~~~Ri~~~~~~~~~~~al~~l~  378 (387)
T PRK07683        320 FPSIGHFTMSSFDFALDLVEEAGLAVVPGSAFSE---------------------YGEGYVRLSYAYSIETLKEGLDRLE  378 (387)
T ss_pred             EEecccCCCCHHHHHHHHHHhCCEEEcCchhhCC---------------------CCCCeEEEEecCCHHHHHHHHHHHH
Confidence             44432 1123445443 5778999998876431                     125789999996  44555566666


Q ss_pred             HHHh
Q 021783          300 KALR  303 (307)
Q Consensus       300 ~~l~  303 (307)
                      +.++
T Consensus       379 ~~l~  382 (387)
T PRK07683        379 AFLQ  382 (387)
T ss_pred             HHHH
Confidence            6554

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=1.1e-25  Score=195.87  Aligned_cols=248  Identities=19%  Similarity=0.214  Sum_probs=168.3

Q ss_pred             HHHHhcCCC-CeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC--------ChHHHHhhc-CCCceEEEEeCCCCCccc
Q 021783            6 AVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--------DLDEVASAI-GPWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         6 ~~~~~~~~g-d~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--------d~~~l~~~l-~~~~~~v~~~~~~n~tG~   75 (307)
                      ++.+++++| |+|++++|.|+.+.    ..++..|++++.++.+        |++++.+.+ .++++++++++|+||||.
T Consensus        92 ~~~~~~~~g~~~vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~  167 (364)
T PRK04781         92 LVRALCVPGRDAVLVTPPVFGMYA----VCARLQNAPLVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGS  167 (364)
T ss_pred             HHHHhcCCCCCeEEEcCCChHHHH----HHHHHcCCEEEEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCC
Confidence            444567888 79999999987665    5567789999999862        456665544 578999999999999999


Q ss_pred             cccHHHHHHHHHH--cCCEEEEeCccCCCCc-----CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH
Q 021783           76 ICDIRKIAEMAHA--HGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  148 (307)
Q Consensus        76 ~~~~~~l~~~~~~--~~~~li~D~a~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~  148 (307)
                      +++.+++.++++.  +++++|+|++|.....     ......+..++++||||.+ |.+|+|+||++++++ +.+.+...
T Consensus       168 ~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~~~~vi~~~SfSK~~-gl~GlRvGy~v~~~~-l~~~l~~~  245 (364)
T PRK04781        168 AIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYDNLAVLRTLSKAH-ALAAARIGSLIANAE-LIAVLRRC  245 (364)
T ss_pred             CcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhhCCCEEEEecChhhc-ccccceeeeeeCCHH-HHHHHHhc
Confidence            9998888888765  3789999999973321     1123346789999999999 778999999998755 44545444


Q ss_pred             HHhcCCCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceE
Q 021783          149 QNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  223 (307)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  223 (307)
                      ....  ..+...+..+...++     .+....+...++.+.+.+.|+..+.+..+ .                +..+.++
T Consensus       246 ~~~~--~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~----------------p~~g~f~  306 (364)
T PRK04781        246 QAPY--PVPTPCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQLPGVRRV-Y----------------PSQGNFL  306 (364)
T ss_pred             cCCC--CCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeE-C----------------CCCCcEE
Confidence            3322  223333333333332     22333444555566666666644321111 1                1246788


Q ss_pred             EEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHH
Q 021783          224 SFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKAL  302 (307)
Q Consensus       224 ~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l  302 (307)
                      ++++++   ..++.+.+..+||.++.|..+.                     + .++++||+++. ++.+++++.|++..
T Consensus       307 ~~~~~~---~~~~~~~l~~~gI~v~~~~~~~---------------------~-~~~~~Ris~~~~~~~~~l~~al~~~~  361 (364)
T PRK04781        307 LVRFDD---AEAAFQALLAAGVVVRDQRAAP---------------------R-LSDALRITLGTPEQNDRVLAALQRTQ  361 (364)
T ss_pred             EEEcCC---HHHHHHHHHHCCeEEeeCCCCC---------------------C-CCCeEEEeCCCHHHHHHHHHHHHHHH
Confidence            888863   4567777888999998876421                     1 25679999997 67788888887654


Q ss_pred             h
Q 021783          303 R  303 (307)
Q Consensus       303 ~  303 (307)
                      .
T Consensus       362 ~  362 (364)
T PRK04781        362 A  362 (364)
T ss_pred             h
Confidence            3

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.94  E-value=4.7e-26  Score=195.84  Aligned_cols=246  Identities=15%  Similarity=0.165  Sum_probs=161.2

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcCCCceEEEEeCCCCCcccccc
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~   78 (307)
                      ++..+..++++|+ |++++|+|+.+.    ..++..|++++.+|.+    |.+.++   ..+++++++++|+||||.+++
T Consensus        69 ~l~~~~~~~~~~~-vv~~~P~y~~y~----~~~~~~G~~v~~vp~~~~~~~~~~l~---~~~~k~v~l~nP~NPTG~~~s  140 (332)
T PRK06425         69 FIYRLLSYINVGN-IIIVEPNFNEYK----GYAFTHGIRISALPFNLINNNPEILN---NYNFDLIFIVSPDNPLGNLIS  140 (332)
T ss_pred             HHHHHHHHhCCCc-EEEeCCChHHHH----HHHHHcCCeEEEEeCCcccCcHHHHh---hcCCCEEEEeCCCCCcCCccC
Confidence            3433344567764 667799998888    7788899999999875    233332   247899999999999999997


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCccCCCCcC-------CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH
Q 021783           79 ---IRKIAEMAHAHGALLLVDNSIMSPVLS-------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  148 (307)
Q Consensus        79 ---~~~l~~~~~~~~~~li~D~a~~~~~~~-------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~  148 (307)
                         +++|+++|+++|+++|+|++|......       .....+..++++||||.+ |.+|+|+||++++++ +.+.+...
T Consensus       141 ~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~l~GlRiGy~v~~~~-li~~l~~~  218 (332)
T PRK06425        141 RDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKIL-GIPSLRIGYIATDDY-NMKISRKI  218 (332)
T ss_pred             HHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeecHHhc-CCchhhheeeecCHH-HHHHHHHc
Confidence               677888889999999999999733211       112335789999999999 778999999999855 44444432


Q ss_pred             HHhcCCCCChhhHHHHhh-cccc-HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEE
Q 021783          149 QNAEGSGLAPFDCWICLR-GVKT-MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  226 (307)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~-~l~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  226 (307)
                      ...  ...+.....+... ..+. .+...+...+..+.+.+.|++.. + ..             + .  ...++++++.
T Consensus       219 ~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~-~~-------------~-~--~~~g~f~~~~  278 (332)
T PRK06425        219 TEP--WSVCDPAIDFIRSIDLDYVAKHSLDIMENERSYLINNLEAMG-F-RA-------------A-G--DPSANFITFM  278 (332)
T ss_pred             CCC--CccCHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHCC-C-EE-------------C-C--CCCceEEEEE
Confidence            211  1122222212111 1111 12223444455555666665431 1 00             0 0  1136778888


Q ss_pred             eCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHH
Q 021783          227 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKAL  302 (307)
Q Consensus       227 ~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l  302 (307)
                      ++   +..++.+.+..+||.++.|..|.                     +.+++++|||++. ++.+++++.|++++
T Consensus       279 ~~---~~~~~~~~l~~~gi~v~~~~~f~---------------------~~~~~~iRis~~~~~~~~~l~~al~~~~  331 (332)
T PRK06425        279 IP---DAHDFYSYLLKNGILVRLLDDYE---------------------CLGEQYIRIAIRRRSFNIKLVNALRNFL  331 (332)
T ss_pred             cC---CHHHHHHHHHHCCeEEEECCCCC---------------------CCCCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence            76   25677777777899998877632                     1125789999986 78888888888765

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.94  E-value=8.5e-26  Score=196.21  Aligned_cols=252  Identities=15%  Similarity=0.172  Sum_probs=169.2

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----Ch-HHHHhhcCCCceEEEEeCCCCCcccc
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DL-DEVASAIGPWTKLVWVESPTNPRQQI   76 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~-~~l~~~l~~~~~~v~~~~~~n~tG~~   76 (307)
                      ++.++...+.+|+ +++.+|+|..+.    ..++..|++++.++.+     ++ +++.+.+.++++++++++|+||||.+
T Consensus        84 ~l~~~~~~l~~g~-viv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~k~v~l~~p~NPTG~~  158 (356)
T PRK08056         84 SIFAVVSGLKPRR-AMIVTPGFAEYR----RALQQVGCEIRRYSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLL  158 (356)
T ss_pred             HHHHHHHHhCCCC-EEEeCCCcHHHH----HHHHHcCCeEEEEecccccCCCccHHHHHhccCCCCEEEEeCCcCCCCCC
Confidence            3433333457776 677789997776    5678889999999863     22 35556677889999999999999999


Q ss_pred             cc---HHHHHHHHHHcCCEEEEeCccCCCCc------CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH
Q 021783           77 CD---IRKIAEMAHAHGALLLVDNSIMSPVL------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  147 (307)
Q Consensus        77 ~~---~~~l~~~~~~~~~~li~D~a~~~~~~------~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~  147 (307)
                      .+   +++|+++|+++++++|+|++|.....      +.....+.+++++|+||++ |.+|+|+||++++++.+.+.+..
T Consensus       159 ~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~v~~~~~~~~~l~~  237 (356)
T PRK08056        159 PERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFY-AIPGLRLGYLVNSDDAAVARMRR  237 (356)
T ss_pred             CCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhc-cCcchhheeeecCCHHHHHHHHH
Confidence            98   78899999999999999999853221      1122346789999999999 77899999999865545444433


Q ss_pred             HHHhcCCCCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEE
Q 021783          148 LQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  224 (307)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  224 (307)
                      ..  .....+...+..+...++.   .....+...++.+.+.+.|+..+.+              .++    ...+++++
T Consensus       238 ~~--~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~--------------~~~----~~~~~~~~  297 (356)
T PRK08056        238 QQ--MPWSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCALPLL--------------TVW----PGRANYLF  297 (356)
T ss_pred             hC--CCCchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc--------------EEc----CCCCcEEE
Confidence            22  1222333444444444432   2222344455555666666543221              111    11366777


Q ss_pred             EEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHh
Q 021783          225 FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALR  303 (307)
Q Consensus       225 ~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~  303 (307)
                      ++++..  ..++.+.|..+||.++.|..|.                     +..++++||+++. ++.+.+++.|.+.++
T Consensus       298 ~~~~~~--~~~~~~~l~~~gI~v~~~~~f~---------------------~~~~~~iRis~~~~~~~~~l~~~l~~~~~  354 (356)
T PRK08056        298 LRCERP--DIDLQRALLTQRILIRSCANYP---------------------GLDSRYYRVAIRSAAENERLLAALRNVLT  354 (356)
T ss_pred             EEcCCC--hHHHHHHHHHCCeEEEECCCCC---------------------CCCCCEEEEEEcCHHHHHHHHHHHHHHHc
Confidence            877532  4567777777899998887632                     1235689999987 788888888888765

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.94  E-value=5e-25  Score=194.38  Aligned_cols=257  Identities=16%  Similarity=0.177  Sum_probs=171.3

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++++||+|++++|+|+.+.    ..+...+..++.++.+       |++++++.+.++++++++++|+||||
T Consensus       105 al~~~~~~~~~~gd~vl~~~p~y~~y~----~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG  180 (402)
T PRK06107        105 AIFLALMATLEAGDEVIIPAPYWVSYP----DMVLANDGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTG  180 (402)
T ss_pred             HHHHHHHHhcCCCCEEEEecCCCcCHH----HHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCCCCCC
Confidence            44 344557899999999999998776    3344556777777652       56889998888899999999999999


Q ss_pred             cccc---HHHHHHHHHHc-CCEEEEeCccCCCC-----cCC-----ccCCCccEEEeccccccccCCCceeEEEEEcChh
Q 021783           75 QICD---IRKIAEMAHAH-GALLLVDNSIMSPV-----LSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  140 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~-~~~li~D~a~~~~~-----~~~-----~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~  140 (307)
                      .+++   +++|+++|+++ ++++|+|++|+.-.     .+.     ....+..++++|+||.+ +.+|+|+||++++++ 
T Consensus       181 ~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~pGlRiG~~~~~~~-  258 (402)
T PRK06107        181 AVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTY-AMTGWRIGYAAGPAD-  258 (402)
T ss_pred             cCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhh-cCcccceeeeecCHH-
Confidence            9996   67888889998 99999999996211     111     11124689999999999 778999999998755 


Q ss_pred             HHHHHHHHHHhcCCCCChhhHHHHhhccc----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhc
Q 021783          141 LAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  216 (307)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~  216 (307)
                      +.+.+...........+...+..+...++    .++...+.+.++.+.+.+.|++.+++              .+.  .+
T Consensus       259 ~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~--------------~~~--~p  322 (402)
T PRK06107        259 LIAAINKLQSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAIPGL--------------SCL--VP  322 (402)
T ss_pred             HHHHHHHHHHhcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCC--------------ccc--CC
Confidence            55556555554444455555555555443    23333444555556666666543211              111  11


Q ss_pred             cCCCceEEEEeCCH-----------HHHHHHHh-cCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEE
Q 021783          217 KGAGSVLSFLTGSL-----------ALSKHVVE-TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI  284 (307)
Q Consensus       217 ~~~~~~~~~~~~~~-----------~~~~~~~~-~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRi  284 (307)
                       ..+.++|+.+...           .+..++.+ .++.+||.+.+|..|.                       .++++||
T Consensus       323 -~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg-----------------------~~~~iRi  378 (402)
T PRK06107        323 -DGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYG-----------------------LSPYFRL  378 (402)
T ss_pred             -CcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccC-----------------------CCCeEEE
Confidence             1244556555210           12345554 4567899999887642                       1457999


Q ss_pred             Eecc--CChHHHHHHHHHHHhcC
Q 021783          285 SVGI--EDVNDLISDLDKALRTG  305 (307)
Q Consensus       285 s~~~--~~~~~~i~~l~~~l~~~  305 (307)
                      |++.  +++++.++.|.+.++++
T Consensus       379 s~~~~~e~l~~~l~~l~~~l~~~  401 (402)
T PRK06107        379 SIATSLETLEEACARIERAVAAL  401 (402)
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhc
Confidence            9986  56667777777777654

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.94  E-value=4.7e-25  Score=194.60  Aligned_cols=257  Identities=14%  Similarity=0.101  Sum_probs=162.8

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChH----HHHhhcC---CCceEEEEe
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLD----EVASAIG---PWTKLVWVE   67 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~----~l~~~l~---~~~~~v~~~   67 (307)
                      |+ .++.++++|||+|++++|+|+.+.    ..++..|++++.++.+       |++    .++++++   +++++++++
T Consensus       107 al~~~~~~l~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~  182 (403)
T PRK08636        107 GYVHLVQAITNPGDVAIVPDPAYPIHS----QAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVN  182 (403)
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCCcchH----HHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEe
Confidence            44 455568899999999999999887    6677889999888752       444    3455553   578999999


Q ss_pred             CCCCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCc-----C---CccCC-CccEEEeccccccccCCCceeEEEE
Q 021783           68 SPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL-----S---RPLEL-GADIVMHSATKFIAGHSDVMAGVLA  135 (307)
Q Consensus        68 ~~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~-----~---~~~~~-~~d~~~~s~~K~~~g~~g~~~G~~~  135 (307)
                      +|+||||.+++   +++|+++|++|++++|+|++|+....     +   ..... +..++++||||.+ |.+|+|+||++
T Consensus       183 ~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlRiG~iv  261 (403)
T PRK08636        183 FPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSY-NMAGWRVGFVV  261 (403)
T ss_pred             CCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEeccccc-CCccceeeeee
Confidence            99999999997   78899999999999999999973211     1   11111 3557789999999 67899999999


Q ss_pred             EcChhHHHHHHHHHHhcCCCCChhhHHHHhhccc----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHH
Q 021783          136 VKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL  211 (307)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~  211 (307)
                      .+++ +.+.+...........+...+..+...++    .++...+.+.++.+.+.+.|++..         +.      .
T Consensus       262 ~~~~-li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---------~~------~  325 (403)
T PRK08636        262 GNKK-LVGALKKIKSWLDYGMFTPIQVAATIALDGDQSCVEEIRETYRKRRDVLIESFANAG---------WE------L  325 (403)
T ss_pred             CCHH-HHHHHHHHHHHhcccCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCC---------Cc------c
Confidence            8755 44445444433222222222222222221    122223334444455555555421         10      0


Q ss_pred             HhhhccCCCceEEEEeCCH---HHHHHHHhc-CCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec
Q 021783          212 HYSQAKGAGSVLSFLTGSL---ALSKHVVET-TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG  287 (307)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~  287 (307)
                      .  . ...+.++|+++++.   .+..++.+. ++..||.+.+|..|..                     ..++++||+++
T Consensus       326 ~--~-p~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~---------------------~~~~~iRi~~~  381 (403)
T PRK08636        326 Q--K-PRASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGFGE---------------------YGDEYVRIALI  381 (403)
T ss_pred             c--C-CCcceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhhCc---------------------CCCCeEEEEec
Confidence            0  1 12466778887532   124566655 4567999998876421                     12468999998


Q ss_pred             c--CChHHHHHHHHHHHhc
Q 021783          288 I--EDVNDLISDLDKALRT  304 (307)
Q Consensus       288 ~--~~~~~~i~~l~~~l~~  304 (307)
                      .  +.+++.++.|.++++.
T Consensus       382 ~~~~~l~~~~~rl~~~l~~  400 (403)
T PRK08636        382 ENENRIRQAARNIKKFLKE  400 (403)
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence            4  3444455555555543

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.94  E-value=1.4e-26  Score=202.49  Aligned_cols=255  Identities=24%  Similarity=0.303  Sum_probs=183.4

Q ss_pred             cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHH
Q 021783           11 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM   85 (307)
Q Consensus        11 ~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~   85 (307)
                      +++||+|++++.+|++...+|..+++..|++++.++.+     |+++++++++++++++++++.+|.+|...|+++|.++
T Consensus        85 ~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~I~~~  164 (371)
T PF00266_consen   85 LKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIEEIAKL  164 (371)
T ss_dssp             GTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHHHHHHH
T ss_pred             cccccccccccccccccccccccccccchhhhccccccccchhhhhhhhhhhccccceEEeecccccccEEeeeceehhh
Confidence            69999999999999999999999888999999988862     8899999999999999999999999999999999999


Q ss_pred             HHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH-----------HHHH---
Q 021783           86 AHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY-----------FLQN---  150 (307)
Q Consensus        86 ~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~-----------~~~~---  150 (307)
                      ||++|+++++|++|+.|..+ +..++++|++++|+|| ++||+|  .|+++++++...+...           ....   
T Consensus       165 ~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~K-l~gp~G--~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~  241 (371)
T PF00266_consen  165 AHEYGALLVVDAAQSAGCVPIDLDELGADFLVFSSHK-LGGPPG--LGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGL  241 (371)
T ss_dssp             HHHTTSEEEEE-TTTTTTSS--TTTTTESEEEEESTS-TTSSST--EEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCH
T ss_pred             hhccCCceeEechhccccccccccccccceeeecccc-cCCCCc--hhhheehhhhhhccccccccccccccccchhccc
Confidence            99999999999999999987 8888999999999999 779999  8999999765444311           0010   


Q ss_pred             ------hcCCCCChhhHHHHhhccccH-----HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHh-hhccC
Q 021783          151 ------AEGSGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY-SQAKG  218 (307)
Q Consensus       151 ------~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~  218 (307)
                            ..+++.+....+....+++.+     +...++..+..+.+.+.++..+.+              ++.. +....
T Consensus       242 ~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~--------------~~~~~~~~~~  307 (371)
T PF00266_consen  242 ADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGI--------------EVLGPDDEPR  307 (371)
T ss_dssp             HSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTE--------------EESSSSCGGB
T ss_pred             ccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCce--------------eEeeeccccc
Confidence                  011122222222222333322     222334445555666666655432              1111 11133


Q ss_pred             CCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHH
Q 021783          219 AGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL  298 (307)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l  298 (307)
                      .+++++|.+++.+ ...+.+.|..+||.++.|..+.   .|.           ....+. ++.+|+|++..+.++.++.|
T Consensus       308 ~~~i~~~~~~~~~-~~~~~~~L~~~~I~~~~G~~~~---~~~-----------~~~~~~-~~~iRvS~~~~nt~~dv~~l  371 (371)
T PF00266_consen  308 RPSIVSFNLPGSD-ADDVVKYLEERGIAVSTGSACA---GPS-----------LDILGM-GGVIRVSLHYYNTEEDVDRL  371 (371)
T ss_dssp             GTTEEEEEETTSS-HHHHHHHHHHHTEEEEESTTTC---HHH-----------HHHHHT-TTEEEEE-GTTSSHHHHHHH
T ss_pred             ccceEEEeecCCC-HHHHHHHHhhcCEEEeccCccc---HHH-----------HHHhCC-CCEEEEeccCCCCHHHHhhC
Confidence            5789999997665 7888888988899998877632   110           000111 27799999998888888875

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.94  E-value=7.3e-25  Score=192.66  Aligned_cols=258  Identities=14%  Similarity=0.147  Sum_probs=170.4

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcC---CCceEEEEeCCCCC
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIG---PWTKLVWVESPTNP   72 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~---~~~~~v~~~~~~n~   72 (307)
                      |+ .++.+++++||+|++++|+|+.+.    ..++..|++++.++.+      |++++++.++   ++++++++++|+||
T Consensus       103 al~~~~~~~~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NP  178 (391)
T PRK07309        103 ALSASLTAILEPGDKVLLPAPAYPGYE----PIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANP  178 (391)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCCcchH----HHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCC
Confidence            44 445567899999999999999887    5567789999998863      6788988886   36899999999999


Q ss_pred             cccccc---HHHHHHHHHHcCCEEEEeCccCCCCc-----CCcc--CCCccEEEeccccccccCCCceeEEEEEcChhHH
Q 021783           73 RQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL-----SRPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  142 (307)
Q Consensus        73 tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~-----~~~~--~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~  142 (307)
                      ||.+++   +++|+++|++||+++|+|++|+....     ....  ..+..++++|+||.+ |.+|+|+||++++++.+.
T Consensus       179 tG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRvG~~v~~~~~~~  257 (391)
T PRK07309        179 TGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSH-AMTGWRIGLIFAPAEFTA  257 (391)
T ss_pred             CCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhc-cCccceeEEEEeCHHHHH
Confidence            999986   88999999999999999999974322     1111  224679999999999 667999999999866444


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHhhccccH----HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          143 KELYFLQNAEGSGLAPFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                       .+...........+...+..+...++..    ....+.+.++.+.+.+.|+... + .+       .        .+ .
T Consensus       258 -~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~-------~--------~p-~  318 (391)
T PRK07309        258 -QLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDLG-F-KI-------I--------KP-D  318 (391)
T ss_pred             -HHHHHHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHCC-C-ee-------c--------CC-C
Confidence             3433333332233344444444444321    1122333444455555554331 1 00       0        11 1


Q ss_pred             CCceEEEEeCCH--HHHHHHHhc-CCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHH
Q 021783          219 AGSVLSFLTGSL--ALSKHVVET-TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVND  293 (307)
Q Consensus       219 ~~~~~~~~~~~~--~~~~~~~~~-l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~  293 (307)
                      .+.++++.++..  ....++.+. +...||.+.+|..|..                     ..++++||+++.  +++++
T Consensus       319 gg~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~---------------------~~~~~iRi~~~~~~~~l~~  377 (391)
T PRK07309        319 GAFYIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFGP---------------------YGEGYVRLSYAASMETIKE  377 (391)
T ss_pred             eeEEEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhCC---------------------CCCCEEEEEecCCHHHHHH
Confidence            234455566432  124556654 4567999988876321                     125789999985  56777


Q ss_pred             HHHHHHHHHhcC
Q 021783          294 LISDLDKALRTG  305 (307)
Q Consensus       294 ~i~~l~~~l~~~  305 (307)
                      .++.|.+++++.
T Consensus       378 ~i~~l~~~~~~~  389 (391)
T PRK07309        378 AMKRLKEYMEEH  389 (391)
T ss_pred             HHHHHHHHHHhh
Confidence            777777777653

>PRK09082 methionine aminotransferase; Validated

Probab=99.94  E-value=1.3e-25  Score=197.05  Aligned_cols=241  Identities=17%  Similarity=0.116  Sum_probs=162.7

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCccccc-
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQIC-   77 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~-   77 (307)
                      .++.+++++||+|++++|+|+++.    ..++..|++++.++.+      |++++++.++++++++++++|+||||.++ 
T Consensus       106 ~~~~~~~~~gd~Vli~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~  181 (386)
T PRK09082        106 AAILALVRPGDEVIVFDPSYDSYA----PAIELAGGRAVRVALQPPDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWS  181 (386)
T ss_pred             HHHHHHcCCCCEEEEeCCCchhhH----HHHHHcCCEEEEEecCcccccCCHHHHHHhcCccceEEEEeCCCCCCCcCCC
Confidence            445567899999999999998887    5566789999999874      77899999988899999999999999986 


Q ss_pred             --cHHHHHHHHHHcCCEEEEeCccCCCCc-----C---C-ccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH
Q 021783           78 --DIRKIAEMAHAHGALLLVDNSIMSPVL-----S---R-PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  146 (307)
Q Consensus        78 --~~~~l~~~~~~~~~~li~D~a~~~~~~-----~---~-~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~  146 (307)
                        ++++|.++|++||+++|+|++|+...+     .   . ....+..++++||||.+ |.+|+|+||++++++ +.+.+.
T Consensus       182 ~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~iv~~~~-l~~~~~  259 (386)
T PRK09082        182 AADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTY-HVTGWKVGYCVAPAA-LSAEFR  259 (386)
T ss_pred             HHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhc-cchhhhhhhhhCCHH-HHHHHH
Confidence              488899999999999999999963221     1   1 11135789999999999 678999999999754 545455


Q ss_pred             HHHHhcCCCCChhhHHHHhhccc----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCce
Q 021783          147 FLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV  222 (307)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  222 (307)
                      ..........+...+..+...+.    .++...+.+.++.+.+.+.|++..         ++-.        + ...+.+
T Consensus       260 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~--------~-~~g~~~  321 (386)
T PRK09082        260 KVHQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANSR---------FKLL--------P-CEGTYF  321 (386)
T ss_pred             HHHhhhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCC---------Cccc--------C-CCeeEE
Confidence            44433333334433333333332    222233444555556666665421         1100        1 112445


Q ss_pred             EEEEeCC--HHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc
Q 021783          223 LSFLTGS--LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  288 (307)
Q Consensus       223 ~~~~~~~--~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~  288 (307)
                      ++++++.  ..+..++.+.+ +.+||.+.+|..|...                   +.+++++||+++.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~-------------------~~~~~~~Ri~~~~  371 (386)
T PRK09082        322 QLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYAD-------------------PFPHRLVRLCFAK  371 (386)
T ss_pred             EEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCC-------------------CCCCCEEEEEecC
Confidence            6667642  12356676654 6779999888754211                   1135789999997

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=1.7e-26  Score=199.94  Aligned_cols=241  Identities=19%  Similarity=0.236  Sum_probs=160.2

Q ss_pred             HHHHhcCCC-CeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            6 AVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         6 ~~~~~~~~g-d~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      ++.+++++| |+|+++.|+|+.+.    ..++..|++++.++.+     |++++++++ ++++++++++|+||||...+.
T Consensus        90 ~~~~~~~~g~~~vli~~P~y~~y~----~~~~~~G~~~~~v~~~~~~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~  164 (351)
T PRK01688         90 LIRAFCEPGKDAILYCPPTYGMYS----VSAETIGVEIRTVPTLDNWQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINP  164 (351)
T ss_pred             HHHHhcCCCCCEEEEcCCCHHHHH----HHHHHcCCEEEEeecCCCCCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCH
Confidence            444577887 99999999998776    6678899999999873     678898887 589999999999999999987


Q ss_pred             HHHHHHHHHc--CCEEEEeCccCCCCcC-----CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhc
Q 021783           80 RKIAEMAHAH--GALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE  152 (307)
Q Consensus        80 ~~l~~~~~~~--~~~li~D~a~~~~~~~-----~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~  152 (307)
                      +++.++++..  ++++|+|++|......     .....+..+++.||||++ |.+|+|+||++++++ +.+.+...... 
T Consensus       165 ~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~rSfSK~~-glaGlRiGy~i~~~~-~i~~l~~~~~~-  241 (351)
T PRK01688        165 QDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLVILRTLSKAF-ALAGLRCGFTLANEE-VINLLLKVIAP-  241 (351)
T ss_pred             HHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCCCEEEEecchHhh-cCHHHHHhHHhCCHH-HHHHHHhccCC-
Confidence            7777776543  6899999999643211     122346789999999999 788999999998755 44444433221 


Q ss_pred             CCCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEe
Q 021783          153 GSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  227 (307)
Q Consensus       153 ~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  227 (307)
                       ...+...+..+...++     .+..+.+.+.++.+.+.+.|+..+.+..+ .                .+.++++++++
T Consensus       242 -~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~----------------ps~~nfi~~~~  303 (351)
T PRK01688        242 -YPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIPCVEQV-F----------------DSETNYILARF  303 (351)
T ss_pred             -CCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeE-C----------------CCCCcEEEEEc
Confidence             1222222333333332     23334445555556666666544321110 1                12366777777


Q ss_pred             CCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHH
Q 021783          228 GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISD  297 (307)
Q Consensus       228 ~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~  297 (307)
                      .+   ...+.+.|..+||.++.+..+                     .| .++++|||++. ++++++++.
T Consensus       304 ~~---~~~l~~~L~~~gi~vr~~~~~---------------------~~-~~~~iRis~~~~~e~~~l~~a  349 (351)
T PRK01688        304 TA---SSAVFKSLWDQGIILRDQNKQ---------------------PG-LSNCLRITIGTREECQRVIDA  349 (351)
T ss_pred             CC---HHHHHHHHHHCCeEEEECCCc---------------------CC-CCCeEEEeCCCHHHHHHHHHh
Confidence            52   567778888889988764431                     11 15689999995 444444443

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.94  E-value=4.5e-26  Score=198.69  Aligned_cols=247  Identities=17%  Similarity=0.214  Sum_probs=167.2

Q ss_pred             HHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHH
Q 021783            7 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRK   81 (307)
Q Consensus         7 ~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~   81 (307)
                      +..++++||+|++++|+|+.+.    ..++..|++++.++.+     |++++++.++++++++++++|+||||.+.+.++
T Consensus       104 ~~~~~~~gd~vlv~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~  179 (361)
T PRK00950        104 MRTFIDPGDEVIIPTPTFSYYE----ISAKAHGAKPVYAKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEED  179 (361)
T ss_pred             HHHhcCCCCEEEEcCCChHHHH----HHHHHcCCEEEEeecCCCCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcCHHH
Confidence            3446789999999999997665    4567789999988742     688999988888999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCccCCCCc---C-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCC
Q 021783           82 IAEMAHAHGALLLVDNSIMSPVL---S-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  157 (307)
Q Consensus        82 l~~~~~~~~~~li~D~a~~~~~~---~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  157 (307)
                      +.++|+++|+++|+|++|.....   . .....+..++++|+||.+ |.+|+|.||++++++ +.+.+......  ...+
T Consensus       180 l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~~~~~~~-~~~~~~~~~~~--~~~~  255 (361)
T PRK00950        180 IRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVF-GLAGLRIGYGFVPEW-LIDYYMRAKTP--FSLT  255 (361)
T ss_pred             HHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhh-cCchhhcchhcCCHH-HHHHHHHhcCC--CCCC
Confidence            99999999999999999963221   1 111234678999999999 678999999998754 44434333322  2233


Q ss_pred             hhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHH
Q 021783          158 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVV  237 (307)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (307)
                      ...+..+...++.. ...++..+..+..++.+.+.-.+ .             +.    ...++++++.+++. ...++.
T Consensus       256 ~~~~~~a~~~l~~~-~~~~~~~~~~~~~r~~l~~~l~~-~-------------~~----~~~~~~i~~~~~~~-~~~~~~  315 (361)
T PRK00950        256 RLSQAAAIAALSDK-EYIEKSIEHGIKSREYLYNELPF-K-------------VY----PSEANFVLVDVTPM-TAKEFC  315 (361)
T ss_pred             HHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHhhcCe-e-------------EC----CCcceEEEEECCCC-CHHHHH
Confidence            44444444444431 12233333333333333221110 0             00    11356788887543 367788


Q ss_pred             hcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHH
Q 021783          238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKAL  302 (307)
Q Consensus       238 ~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l  302 (307)
                      +.|..+||.+++|..+.                     +..++++|+|++. ++++++++.|++++
T Consensus       316 ~~l~~~gv~v~~~~~f~---------------------~~~~~~lRis~~~~~~~~~l~~~L~~il  360 (361)
T PRK00950        316 EELLKRGVIVRDCTSFR---------------------GLGDYYIRVSIGTFEENERFLEILKEIV  360 (361)
T ss_pred             HHHHHCCEEEeeCCccC---------------------CCCCCeEEEECCCHHHHHHHHHHHHHHh
Confidence            88878899988766421                     1135789999985 56677777776654

>PRK07777 aminotransferase; Validated

Probab=99.94  E-value=4.9e-25  Score=193.70  Aligned_cols=256  Identities=20%  Similarity=0.155  Sum_probs=166.3

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC--------ChHHHHhhcCCCceEEEEeCCCCCc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--------DLDEVASAIGPWTKLVWVESPTNPR   73 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--------d~~~l~~~l~~~~~~v~~~~~~n~t   73 (307)
                      |+ .++.+++++||+|+++.|.|+.+.    ..++..|++++.++.+        |++++++.+.+++++|++++|+|||
T Consensus        97 al~~~~~~~~~~gd~vli~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPt  172 (387)
T PRK07777         97 AIAAAVLGLVEPGDEVLLIEPYYDSYA----AVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPT  172 (387)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCchhhH----HHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEEcCCCCCC
Confidence            45 455567899999999999998877    5566778888888752        6789999888889999999999999


Q ss_pred             ccccc---HHHHHHHHHHcCCEEEEeCccCCCCc------C--C-ccCCCccEEEeccccccccCCCceeEEEEEcChhH
Q 021783           74 QQICD---IRKIAEMAHAHGALLLVDNSIMSPVL------S--R-PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        74 G~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~------~--~-~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~  141 (307)
                      |.+++   +++|.++|+++++++|+|++|....+      +  . ....+.+++++|+||.+ |.+|+|+||++++++ +
T Consensus       173 G~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~-l  250 (387)
T PRK07777        173 GTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTF-NVTGWKIGWACGPAP-L  250 (387)
T ss_pred             CccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhc-cCcCceeEEEecCHH-H
Confidence            99985   88999999999999999999963221      1  1 11245789999999999 667999999998755 4


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHhhcc----ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhcc
Q 021783          142 AKELYFLQNAEGSGLAPFDCWICLRGV----KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  217 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~  217 (307)
                      .+.+...........+...+..+...+    +.++...+.+.++.+.+.+.|++..         +.-.        + .
T Consensus       251 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---------~~~~--------~-~  312 (387)
T PRK07777        251 IAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAEAG---------FEVH--------D-S  312 (387)
T ss_pred             HHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCC---------CCcc--------C-C
Confidence            444444433222222222222222222    1222333445555566666665431         1101        1 1


Q ss_pred             CCCceEEEEeCC--HHHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChH
Q 021783          218 GAGSVLSFLTGS--LALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVN  292 (307)
Q Consensus       218 ~~~~~~~~~~~~--~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~  292 (307)
                      ..+.+++++++.  .....++.+.|. ..||.+.+|..|...                  .+..++++||+++.  ++++
T Consensus       313 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~------------------~~~~~~~~Ri~~~~~~~~l~  374 (387)
T PRK07777        313 AGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDP------------------ADAWNHLVRFAFCKRDDTLD  374 (387)
T ss_pred             CcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCC------------------CcCCCCeEEEEecCCHHHHH
Confidence            124455556532  223677888874 679999998764311                  01125689999986  3444


Q ss_pred             HHHHHHHH
Q 021783          293 DLISDLDK  300 (307)
Q Consensus       293 ~~i~~l~~  300 (307)
                      +.+++|.+
T Consensus       375 ~~l~~l~~  382 (387)
T PRK07777        375 EAIRRLRA  382 (387)
T ss_pred             HHHHHHHH
Confidence            44444444

>PRK08175 aminotransferase; Validated

Probab=99.94  E-value=4.8e-25  Score=194.13  Aligned_cols=256  Identities=14%  Similarity=0.098  Sum_probs=167.8

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcC---CCceEEEEeCCCCCccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIG---PWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~   77 (307)
                      .++..+++|||+|++++|+|+.+.    ..++..|++++.++.+    +.+++++.++   ++++++++++|+||||.++
T Consensus       106 ~~~~~~~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~  181 (395)
T PRK08175        106 HLMLATLDHGDTVLVPNPSYPIHI----YGAVIAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFPSNPTAQCV  181 (395)
T ss_pred             HHHHHhCCCCCEEEEcCCCCcchH----HHHHHcCCeEEEEecccCCCcHHHHHHHHhhccCCceEEEEeCCCCCCCCCC
Confidence            344567899999999999998877    4446689999988874    4678888775   4789999999999999999


Q ss_pred             cH---HHHHHHHHHcCCEEEEeCccCCCCc-----CCc---c-CCCccEEEeccccccccCCCceeEEEEEcChhHHHHH
Q 021783           78 DI---RKIAEMAHAHGALLLVDNSIMSPVL-----SRP---L-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  145 (307)
Q Consensus        78 ~~---~~l~~~~~~~~~~li~D~a~~~~~~-----~~~---~-~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~  145 (307)
                      +.   ++|+++|++||+++|+|++|+....     ...   . ..+..++++|+||.+ |.+|+|+||++.+++ +.+.+
T Consensus       182 ~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~pGlRiG~~~~~~~-l~~~~  259 (395)
T PRK08175        182 ELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSY-NMAGWRIGFMVGNPE-LVSAL  259 (395)
T ss_pred             CHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccc-cCcchhheeeeCCHH-HHHHH
Confidence            85   7999999999999999999963221     111   1 124568899999999 678999999998754 55555


Q ss_pred             HHHHHhcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCc
Q 021783          146 YFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS  221 (307)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (307)
                      ...........+...+..+...+..    ++...+.+.++.+.+.+.|+... +        .      ..  . ...+.
T Consensus       260 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~--------~------~~--~-p~~g~  321 (395)
T PRK08175        260 ARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAG-W--------M------VE--M-PKASM  321 (395)
T ss_pred             HHHHhhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHcC-C--------c------cc--C-CCEEE
Confidence            5544433322223233333333322    22223334445555556565431 1        0      00  1 12467


Q ss_pred             eEEEEeCCHH---HHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHH
Q 021783          222 VLSFLTGSLA---LSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLI  295 (307)
Q Consensus       222 ~~~~~~~~~~---~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i  295 (307)
                      ++++.+++..   ...++.+.+ ++.||.+.+|..|..                     ..++++||+++.  +.+.+.+
T Consensus       322 ~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~---------------------~~~~~lRis~~~~~~~~~~al  380 (395)
T PRK08175        322 YVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGD---------------------YGDTHVRFALIENRDRIRQAI  380 (395)
T ss_pred             EEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCc---------------------CCCCeEEEEeCCCHHHHHHHH
Confidence            8888875431   256676654 568999988876421                     124679999974  4455556


Q ss_pred             HHHHHHHhcC
Q 021783          296 SDLDKALRTG  305 (307)
Q Consensus       296 ~~l~~~l~~~  305 (307)
                      +.|.+.+++.
T Consensus       381 ~~l~~~l~~~  390 (395)
T PRK08175        381 RGIKAMFRAD  390 (395)
T ss_pred             HHHHHHHHhc
Confidence            6666666543

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.94  E-value=8.7e-25  Score=192.36  Aligned_cols=254  Identities=19%  Similarity=0.187  Sum_probs=171.9

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG~   75 (307)
                      ++ .++.+++++||+|++++|+|..+.    ..++..|++++.++.+      |++++++.++++++++++++|+||||.
T Consensus       108 al~~~~~~l~~~gd~Vli~~p~~~~~~----~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~  183 (394)
T PRK06836        108 ALNVALKAILNPGDEVIVFAPYFVEYR----FYVDNHGGKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINSPNNPTGV  183 (394)
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCCccHH----HHHHHcCCEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeCCCCCCCc
Confidence            44 344557899999999999998877    5567889999999863      689999999889999999999999999


Q ss_pred             ccc---HHHHHHHHHH------cCCEEEEeCccCCCCc-----CC-ccCCCccEEEeccccccccCCCceeEEEEEcChh
Q 021783           76 ICD---IRKIAEMAHA------HGALLLVDNSIMSPVL-----SR-PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  140 (307)
Q Consensus        76 ~~~---~~~l~~~~~~------~~~~li~D~a~~~~~~-----~~-~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~  140 (307)
                      +++   +++|+++|++      ||+++|+|++|..-..     +. ....+.+++++|+||.+ +.+|+|+||++++++.
T Consensus       184 ~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~pGlRiG~~~~~~~~  262 (394)
T PRK06836        184 VYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSL-SLPGERIGYIAVNPEM  262 (394)
T ss_pred             CCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhc-cCcceeeEEEecCHHH
Confidence            987   7788888998      8999999999973221     11 12345789999999999 6679999999997543


Q ss_pred             HHHH---H---HHHHHhcC-CCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHh
Q 021783          141 LAKE---L---YFLQNAEG-SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  213 (307)
Q Consensus       141 ~~~~---~---~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~  213 (307)
                       .+.   .   .......+ ...+...+......++.- ...+.+.++.+.+.+.|++.. + ...              
T Consensus       263 -~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~r~~l~~~L~~~g-~-~~~--------------  324 (394)
T PRK06836        263 -EDADDLVAALVFANRILGFVNAPALMQRVVAKCLDAT-VDVSIYKRNRDLLYDGLTELG-F-ECV--------------  324 (394)
T ss_pred             -hhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCCh-HHHHHHHHHHHHHHHHHHhCC-C-Eee--------------
Confidence             221   1   11112111 123333444444444331 223445556666666666431 1 100              


Q ss_pred             hhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CCh
Q 021783          214 SQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDV  291 (307)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~  291 (307)
                       . ...+.++++.++.. +..++.+.+..+||.+..|..|.                       .++++||+++.  +.+
T Consensus       325 -~-~~gg~~~~~~~~~~-~~~~~~~~l~~~gv~v~~g~~f~-----------------------~~~~iRi~~~~~~~~~  378 (394)
T PRK06836        325 -K-PQGAFYLFPKSPEE-DDVAFCEKAKKHNLLLVPGSGFG-----------------------CPGYFRLSYCVDTETI  378 (394)
T ss_pred             -c-CCceEEEEEeCCCC-CHHHHHHHHHhCCEEEECchhcC-----------------------CCCeEEEEecCCHHHH
Confidence             1 11244566666543 36677788888899998887532                       13579999985  455


Q ss_pred             HHHHHHHHHHHhcC
Q 021783          292 NDLISDLDKALRTG  305 (307)
Q Consensus       292 ~~~i~~l~~~l~~~  305 (307)
                      ++.++.|.++++++
T Consensus       379 ~~~i~~l~~~l~~~  392 (394)
T PRK06836        379 ERSLPAFEKLAKEY  392 (394)
T ss_pred             HHHHHHHHHHHHHh
Confidence            56667777777654

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.94  E-value=3.3e-25  Score=190.35  Aligned_cols=235  Identities=19%  Similarity=0.180  Sum_probs=157.4

Q ss_pred             hcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHH
Q 021783           10 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMA   86 (307)
Q Consensus        10 ~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~---~~~l~~~~   86 (307)
                      .+.+||+|++++|+|+.+.    ..++..|++++.+|.+   ++++.++ +++++++++|+||||.+++   +++|+++|
T Consensus        82 ~~~~gd~v~v~~P~y~~~~----~~~~~~g~~~~~v~~~---~~~~~~~-~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~  153 (330)
T PRK05664         82 RLRAPGRVGVLSPCYAEHA----HAWRRAGHQVRELDEA---EVEAALD-SLDVLVVVNPNNPTGRRFDPARLLAWHARL  153 (330)
T ss_pred             HccCCCEEEEcCCChHHHH----HHHHHcCCeEEEechh---hHhhhhc-CCCEEEEeCCcCCCCCccCHHHHHHHHHHH
Confidence            4689999999999998888    7778899999999864   4445553 6788999999999999997   56666777


Q ss_pred             HHcCCEEEEeCccCCCCc----CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHH
Q 021783           87 HAHGALLLVDNSIMSPVL----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW  162 (307)
Q Consensus        87 ~~~~~~li~D~a~~~~~~----~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (307)
                      +++|+++|+|++|.....    ......+..++++||||.+ |.+|+|+||++++++ +.+.+......  ...+...+.
T Consensus       154 ~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~~-gl~GlRiG~~v~~~~-l~~~~~~~~~~--~~~~~~~~~  229 (330)
T PRK05664        154 AARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKFF-GLAGARLGFVLAEPA-LLRALAELLGP--WTVSGPTRW  229 (330)
T ss_pred             HhcCCEEEEECCcccCCCcccccccccCCCEEEEeeccccc-cCCCcceEEEEeCHH-HHHHHHHhcCC--CCCCHHHHH
Confidence            899999999999964321    1222334679999999999 678999999999754 44444443321  123344444


Q ss_pred             HHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhc
Q 021783          163 ICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVET  239 (307)
Q Consensus       163 ~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (307)
                      .+...+..   .+...+...++.+.+.+.+++..         +.          +..+...++++.++   +..++.+.
T Consensus       230 ~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~~---------~~----------~~~~~~~f~~~~~~---~~~~~~~~  287 (330)
T PRK05664        230 LAQAALADTPWQRRQRERLLAASQRLAALLRRHG---------LT----------PAGGCALFQWVRTE---DAAALHEF  287 (330)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHCC---------Cc----------ccCCcceEEEEecC---CHHHHHHH
Confidence            44444432   22233444455556666665431         10          11112345566554   35677788


Q ss_pred             CCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 021783          240 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  304 (307)
Q Consensus       240 l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  304 (307)
                      +..+||.++.   |.                       .++++|||++.  ++.+++.+.|++..++
T Consensus       288 l~~~gi~v~~---f~-----------------------~~~~iRis~~~~~~~~~~l~~al~~~~~~  328 (330)
T PRK05664        288 LARRGILTRL---FE-----------------------QPASLRFGLPADEADWARLDQALLAYRKE  328 (330)
T ss_pred             HHHCCeEEEE---CC-----------------------CCCeEEEECCCCHHHHHHHHHHHHHHHhh
Confidence            8888998852   11                       13579999994  5677777777666543

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=2.4e-25  Score=194.54  Aligned_cols=246  Identities=16%  Similarity=0.158  Sum_probs=164.8

Q ss_pred             HHHHhcCCCC-eEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcC----CCceEEEEeCCCCCcc
Q 021783            6 AVTHLLGTGE-EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIG----PWTKLVWVESPTNPRQ   74 (307)
Q Consensus         6 ~~~~~~~~gd-~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~----~~~~~v~~~~~~n~tG   74 (307)
                      ++.+++.+|| +|++++|+|+.+.    ..++..|++++.++.+      |++++++++.    ++++++++++|+||||
T Consensus       107 ~~~~~~~~g~~~Vlv~~P~y~~~~----~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG  182 (374)
T PRK02610        107 LLIATCLGGEGSILVAEPTFSMYG----ILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTG  182 (374)
T ss_pred             HHHHHcCCCCCeEEEcCCChHHHH----HHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCC
Confidence            3455667786 8999999998887    6678899999999853      6788988876    4899999999999999


Q ss_pred             ccccHHHHHHHHHH-cCCEEEEeCccCCCCc----CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           75 QICDIRKIAEMAHA-HGALLLVDNSIMSPVL----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        75 ~~~~~~~l~~~~~~-~~~~li~D~a~~~~~~----~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                      .+++.+++.++++- +|+++|+|++|.....    .........++++||||.+ |.+|+|+||++++++ +.+.+....
T Consensus       183 ~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~-g~~GlRiG~~v~~~~-l~~~l~~~~  260 (374)
T PRK02610        183 NPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAF-RLAAHRVGYAIGHPE-LIAVLEKVR  260 (374)
T ss_pred             CCCCHHHHHHHHhccCCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhc-cCcccceeeeecCHH-HHHHHHHhc
Confidence            99987666665532 4899999999973221    1122234568899999999 678999999998654 544444433


Q ss_pred             HhcCCCCChhhHHHHhhccccH---HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEE
Q 021783          150 NAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  226 (307)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  226 (307)
                      .  ....+...+.++...++..   ....+...+..+.+.+.|++.+              ++...    ...+.+++++
T Consensus       261 ~--~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~--------------~~~~~----p~~g~f~~~~  320 (374)
T PRK02610        261 L--PYNLPSFSQLAAQLALEHRQELLAAIPEILQERDRLYQALQELP--------------QLRVW----PSAANFLYLR  320 (374)
T ss_pred             C--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CcEeC----CCcceEEEEe
Confidence            2  1223444455555555432   2222233333333444444322              11111    1246778888


Q ss_pred             eCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHhcC
Q 021783          227 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALRTG  305 (307)
Q Consensus       227 ~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~~~  305 (307)
                      ++......++.+.+..+||.++.+                            ++++|||++. +++++.++.|.++++++
T Consensus       321 l~~~~~~~~~~~~l~~~gi~v~~~----------------------------~~~lRls~~~~~~~~~~l~~l~~~l~~~  372 (374)
T PRK02610        321 LSQDAALAALHQALKAQGTLVRHT----------------------------GGGLRITIGTPEENQRTLERLQAALTQL  372 (374)
T ss_pred             CCCCCCHHHHHHHHHHCCEEEEeC----------------------------CCeEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence            764334677778888888877531                            3469999986 56788888888888765

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.94  E-value=9.2e-25  Score=189.42  Aligned_cols=249  Identities=15%  Similarity=0.193  Sum_probs=170.8

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCccc
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG~   75 (307)
                      ++..+...+.+ ++|++++|+|+.+.    ..++..|++++.++.+       | +++.+.+.++++++++++|+||||.
T Consensus        83 ~l~~~~~~~~~-~~v~i~~P~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~  156 (354)
T PRK06358         83 LIFNIVKVTKP-KKVLILAPTFAEYE----RALKAFDAEIEYAELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQ  156 (354)
T ss_pred             HHHHHHHHhCC-CcEEEecCChHHHH----HHHHHcCCeeEEEeCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCC
Confidence            34333333444 68999999998777    5567889999998763       3 4555556667999999999999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCccCCCCcC--------CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHH
Q 021783           76 ICD---IRKIAEMAHAHGALLLVDNSIMSPVLS--------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  144 (307)
Q Consensus        76 ~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~--------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~  144 (307)
                      +++   +++|+++|++||+++|+|++|......        .....+..++++||||.+ |.+|+|+||++++++.+.+.
T Consensus       157 ~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-gl~G~RiG~lv~~~~~~~~~  235 (354)
T PRK06358        157 LISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFF-AIPGLRLGYGLTSNKNLAEK  235 (354)
T ss_pred             ccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhc-cCcchhheeeecCCHHHHHH
Confidence            996   888889999999999999999632211        122335789999999999 77899999999876555554


Q ss_pred             HHHHHHhcCCCCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCc
Q 021783          145 LYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS  221 (307)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (307)
                      +.....  ....+...+......++.   +....+...++.+.+.+.|+..+++ .             +.  ++  .++
T Consensus       236 ~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~-------------~~--~~--~g~  295 (354)
T PRK06358        236 LLQMRE--PWSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEFKGI-K-------------VY--KP--SVN  295 (354)
T ss_pred             HHHhCC--CCcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCCCc-E-------------Ec--CC--cce
Confidence            544332  223344455555555532   2333444555566666666543221 1             11  11  356


Q ss_pred             eEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHH
Q 021783          222 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDK  300 (307)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~  300 (307)
                      ++++++++.   .++.+.+.++||.+..|..|.                     +.+++++||+++. ++.+++++.|.+
T Consensus       296 f~~~~~~~~---~~~~~~l~~~gI~v~~~~~f~---------------------~~~~~~iRls~~~~~~~~~l~~~l~~  351 (354)
T PRK06358        296 FIFFKLEKP---IDLRKELLKKGILIRSCSNYR---------------------GLDENYYRVAVKSREDNKKLLKALEV  351 (354)
T ss_pred             EEEEEcCch---HHHHHHHHHCCeEEEECCCCC---------------------CCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            788888642   567777777899999887632                     1135789999986 888999988877


Q ss_pred             HH
Q 021783          301 AL  302 (307)
Q Consensus       301 ~l  302 (307)
                      .+
T Consensus       352 ~~  353 (354)
T PRK06358        352 IL  353 (354)
T ss_pred             Hh
Confidence            65

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.94  E-value=8.1e-26  Score=196.44  Aligned_cols=241  Identities=19%  Similarity=0.251  Sum_probs=168.6

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      .++.+++++||+|++++|+|+.+.    ..++..|++++.++.+    |+++++++++++++++++++|+||||.+++.+
T Consensus        96 ~~~~~l~~~gd~vlv~~P~y~~~~----~~~~~~g~~v~~v~~~~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~~~  171 (366)
T PRK01533         96 IISRAVLKAGDNIVTAGATFPQYR----HHAIIEGCEVKEVALNNGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDR  171 (366)
T ss_pred             HHHHHhcCCCCEEEEcCCcHHHHH----HHHHHcCCEEEEeecCCCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcCHH
Confidence            344567899999999999998887    5677889999999874    78999999988899999999999999999866


Q ss_pred             HHHHHH---HHcCCEEEEeCccCCCCc--------CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           81 KIAEMA---HAHGALLLVDNSIMSPVL--------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        81 ~l~~~~---~~~~~~li~D~a~~~~~~--------~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                      ++.+++   ++++ ++|+|++|.....        ......+..++++||||.+ |.+|+|+||++++++ +.+.+....
T Consensus       172 ~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~l~GlRiG~~i~~~~-~~~~l~~~~  248 (366)
T PRK01533        172 KLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAY-GLASFRVGYAVGHEE-LIEKLNVVR  248 (366)
T ss_pred             HHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHh-cChHHHHhHHhCCHH-HHHHHHHhc
Confidence            655555   4445 6778999852111        1122345789999999999 778999999998744 545454433


Q ss_pred             HhcCCCCChhhHHHHhhccccH---HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEE
Q 021783          150 NAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  226 (307)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  226 (307)
                      .  ....+...+.++...++.-   ....+...++.+.+.+.++...         +.      +.    ...+++++++
T Consensus       249 ~--~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~~~g---------~~------~~----~~~~nf~~~~  307 (366)
T PRK01533        249 L--PFNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKENE---------IP------FY----QSQTNFIFLP  307 (366)
T ss_pred             C--CCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCC---------Cc------cC----CCcCcEEEEe
Confidence            2  2345556666666666431   1222333344444444444321         11      11    2247788888


Q ss_pred             eCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHhc
Q 021783          227 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALRT  304 (307)
Q Consensus       227 ~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~~  304 (307)
                      +.+   ..++.+.|..+||.++.  .                          ++++|||++. ++.+++++.|++.++.
T Consensus       308 ~~~---~~~~~~~l~~~GI~Vr~--~--------------------------~~~iRis~~~~~~~~~l~~al~~~~~~  355 (366)
T PRK01533        308 VEN---GGEIYEACAHAGFIIRP--F--------------------------PNGVRITVGTREQNEGVISVLQQHFEN  355 (366)
T ss_pred             CCC---HHHHHHHHHHCCcEEcc--C--------------------------CCceEEeCCCHHHHHHHHHHHHHHHHh
Confidence            752   45678888889998875  1                          2359999986 8999999999888753

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.94  E-value=2.1e-25  Score=194.09  Aligned_cols=257  Identities=18%  Similarity=0.153  Sum_probs=169.7

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCC-CceEEEEeCCCCCcccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP-WTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~   78 (307)
                      .++.+++++||+|++++++|++..  +...++..|++++.+|.+     |++++++.+++ +++++++++++||+|.+.|
T Consensus        65 ~~~~~~~~~g~~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~  142 (356)
T cd06451          65 AALSNLLEPGDKVLVGVNGVFGDR--WADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNP  142 (356)
T ss_pred             HHHHHhCCCCCEEEEecCCchhHH--HHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCCCEEEEeccCCCcccccC
Confidence            344567899999999998886632  225567789999998753     78999999986 8999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH---H------
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF---L------  148 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~---~------  148 (307)
                      +++|.++|+++|+++++|++|+.|..+ +...++.|++++|+||++++|.|  +|+++.+++.... +..   .      
T Consensus       143 ~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~~p~g--~G~l~~~~~~~~~-~~~~~~~~~~~~~  219 (356)
T cd06451         143 LEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPG--LGPIAFSERALER-IKKKTKPKGFYFD  219 (356)
T ss_pred             HHHHHHHHHhcCCEEEEeeehhccCccccccccCccEEEecCchhccCCCC--cceeEECHHHHHH-HHhcCCCCceeec
Confidence            999999999999999999999887654 55567899999999999988877  8999998664433 221   0      


Q ss_pred             ----HH------hcCCCCChhhHHHHhhccccH-----HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHh
Q 021783          149 ----QN------AEGSGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  213 (307)
Q Consensus       149 ----~~------~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~  213 (307)
                          ..      ...++.+....+.+..+++.+     ....++..++++.+.+.|+.. .+ .+             ..
T Consensus       220 ~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~-------------~~  284 (356)
T cd06451         220 LLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL-GL-KL-------------LA  284 (356)
T ss_pred             HHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CC-ee-------------cc
Confidence                00      011122222222223333322     223344445555566666543 11 11             00


Q ss_pred             hhccCCCceEEEEeCCHHHHHHHHhcCCcc-eeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChH
Q 021783          214 SQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVN  292 (307)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~  292 (307)
                      ++....+.++++.+++......+.+.|..+ ||.++.|....                       .++++|+|++..+.+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gI~~~~g~~~~-----------------------~~~~iRis~~~~~~~  341 (356)
T cd06451         285 KPELRSPTVTAVLVPEGVDGDEVVRRLMKRYNIEIAGGLGPT-----------------------AGKVFRIGHMGEATR  341 (356)
T ss_pred             CcccCCCceEEEECCCCCCHHHHHHHHHHhCCEEEecccccc-----------------------cCCEEEEecCCCCCH
Confidence            010112233445554333467888888887 99887765311                       134799999865555


Q ss_pred             HHHHHHHHHHhc
Q 021783          293 DLISDLDKALRT  304 (307)
Q Consensus       293 ~~i~~l~~~l~~  304 (307)
                      +.++++.++|++
T Consensus       342 e~v~~~~~~l~~  353 (356)
T cd06451         342 EDVLGVLSALEE  353 (356)
T ss_pred             HHHHHHHHHHHH
Confidence            566666555543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PRK09148 aminotransferase; Validated

Probab=99.94  E-value=1.9e-24  Score=190.63  Aligned_cols=250  Identities=14%  Similarity=0.069  Sum_probs=161.1

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhc---CCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAI---GPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l---~~~~~~v~~~~~~n~tG   74 (307)
                      ++ .++..++++||+|++++|+|+.+.    ..++..|++++.++.+    +++++++.+   .++++++++++|+||||
T Consensus       104 al~~~~~~l~~~gd~Vl~~~P~y~~~~----~~~~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~~P~NPtG  179 (405)
T PRK09148        104 GFANMAQAITAPGDVILCPNPSYPIHA----FGFIMAGGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNPTA  179 (405)
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCCcccH----HHHHhcCCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEeCCCCCCC
Confidence            44 344557899999999999999887    4456789999999863    334444444   36889999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCc-----CCcc----CCCccEEEeccccccccCCCceeEEEEEcChhHH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVL-----SRPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  142 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~-----~~~~----~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~  142 (307)
                      .+++   +++|.++|++||+++|+|++|....+     +...    ..+..++++||||.+ |.+|+|+||++++++ +.
T Consensus       180 ~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~-~~pGlR~G~~v~~~~-~i  257 (405)
T PRK09148        180 YVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTF-SMAGWRMGFAVGNER-LI  257 (405)
T ss_pred             cCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEecccccc-CCcchheeeeeCCHH-HH
Confidence            9998   57889999999999999999973211     1111    123567899999999 678999999998754 55


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHhhccc----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          143 KELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      +.+...........+...+..+...++    .++...+.+.++...+.+.|++..         +.-.        . ..
T Consensus       258 ~~l~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~~~---------~~~~--------~-p~  319 (405)
T PRK09148        258 AALTRVKSYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRAG---------WDIP--------P-PA  319 (405)
T ss_pred             HHHHHHHHHhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHcC---------CccC--------C-CC
Confidence            555555543333333334444333332    223333444555555666665431         1000        1 12


Q ss_pred             CCceEEEEeCCH---HHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHH
Q 021783          219 AGSVLSFLTGSL---ALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL  294 (307)
Q Consensus       219 ~~~~~~~~~~~~---~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~  294 (307)
                      .+.++++.+++.   ....++.+.+ ++.||.+.+|..|..                     ..++++||+++. +.+++
T Consensus       320 ~g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~---------------------~~~~~~Ri~~~~-~~~~l  377 (405)
T PRK09148        320 ASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGE---------------------HGDGYVRIALVE-NEQRI  377 (405)
T ss_pred             eeEEEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhCC---------------------CCCCeEEEEecC-CHHHH
Confidence            355777777532   1245565554 468999999876421                     024689999983 44444


Q ss_pred             HHHH
Q 021783          295 ISDL  298 (307)
Q Consensus       295 i~~l  298 (307)
                      .+.+
T Consensus       378 ~~al  381 (405)
T PRK09148        378 RQAA  381 (405)
T ss_pred             HHHH
Confidence            4333

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.94  E-value=5.4e-25  Score=193.03  Aligned_cols=255  Identities=18%  Similarity=0.153  Sum_probs=171.4

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-------CChHHHHhhcC-------CCceEEEEeCCC
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIG-------PWTKLVWVESPT   70 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~-------~~~~~v~~~~~~   70 (307)
                      .++.+++++||+|+++.++|.+..    ..++..|++++.++.       .|++++++.++       +++++|++++++
T Consensus        93 ~al~~l~~~gd~Vlv~~~~h~s~~----~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~  168 (387)
T PRK09331         93 AVMHSLCKKGDYVVLDGLAHYTSY----VAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVD  168 (387)
T ss_pred             HHHHHhcCCCCEEEECCCchHHHH----HHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCC
Confidence            566677899999999999998887    346778999999987       37899998885       368999999999


Q ss_pred             CCccccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           71 NPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        71 n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                      |++|.+.|+++|.++|+++|+++++|++|+.|..+ +...+|+|++++|+||++++++|  +|+++++++.+........
T Consensus       169 ~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~~--~G~l~~~~~~i~~~~~~~~  246 (387)
T PRK09331        169 GNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAP--SGVLATTEEYADKVFRTSR  246 (387)
T ss_pred             CCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCCC--EEEEEECHHHHhhcccccC
Confidence            99999999999999999999999999999998866 66778999999999999987666  9999998654443222110


Q ss_pred             H-------hcCCCCChhhHHHHhhccccH---HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCC
Q 021783          150 N-------AEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  219 (307)
Q Consensus       150 ~-------~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (307)
                      .       ..+++...........+++.+   ..++++..++++.+.+.+++.+++. +..+.              ...
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~~-~~~~~--------------~~~  311 (387)
T PRK09331        247 KFGVKEVELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKIEGFK-QLGEK--------------PRN  311 (387)
T ss_pred             CCcccceeeeceecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE-EeccC--------------cCc
Confidence            0       012122222223223333322   2344556677777777777665431 11110              012


Q ss_pred             CceEEEEeCCHH--------HHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEe-c--c
Q 021783          220 GSVLSFLTGSLA--------LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV-G--I  288 (307)
Q Consensus       220 ~~~~~~~~~~~~--------~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~-~--~  288 (307)
                      .+++.+..+...        ....+.+.|.++||......                          ....+|+.. +  .
T Consensus       312 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~--------------------------~~~i~ri~~~g~t~  365 (387)
T PRK09331        312 HDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKPG--------------------------ATKEFKLSTYGLTW  365 (387)
T ss_pred             CCeEEEeCCchhHHhhhccccchhHHHHHHHcCceEEccC--------------------------CceEEEEEeccCCH
Confidence            344445433221        12457777877888622111                          122356655 3  3


Q ss_pred             CChHHHHHHHHHHHhcCC
Q 021783          289 EDVNDLISDLDKALRTGP  306 (307)
Q Consensus       289 ~~~~~~i~~l~~~l~~~~  306 (307)
                      ++++++++.|++.+++.+
T Consensus       366 ~di~~l~~aL~~i~~~~~  383 (387)
T PRK09331        366 EQVEYVADAFKEIAEKYG  383 (387)
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            678888888887776543

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.94  E-value=2.1e-24  Score=191.50  Aligned_cols=257  Identities=14%  Similarity=0.134  Sum_probs=168.8

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcC------CCceEEEEeC
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG------PWTKLVWVES   68 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~------~~~~~v~~~~   68 (307)
                      |+ .++.+++.|||.|+++.|.|+.+...+   ....|++++.++.+       |++++++++.      .++|++++++
T Consensus       132 al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~---~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~n  208 (447)
T PLN02607        132 ANELLTFILADPGDALLVPTPYYPGFDRDL---RWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITN  208 (447)
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCCcchHHHH---HhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeC
Confidence            44 344557899999999999998887322   12578898888763       6788888775      3789999999


Q ss_pred             CCCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-----Ccc---------C-CCccEEEeccccccccCCCce
Q 021783           69 PTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPL---------E-LGADIVMHSATKFIAGHSDVM  130 (307)
Q Consensus        69 ~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~~---------~-~~~d~~~~s~~K~~~g~~g~~  130 (307)
                      |+||||.+++   +++|+++|++||+++|+|++|+...+.     ...         . .+..+++.|+||.| |.+|+|
T Consensus       209 P~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~f-g~~GlR  287 (447)
T PLN02607        209 PSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDL-GLPGFR  287 (447)
T ss_pred             CCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcC-CCCcce
Confidence            9999999997   789999999999999999999743221     110         1 24568999999999 678999


Q ss_pred             eEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhcccc-------HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCC
Q 021783          131 AGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL  203 (307)
Q Consensus       131 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l  203 (307)
                      +|+++..++.+...........  ..+...+.++...+..       +....+++.+..+.+.+.|++.. +     +- 
T Consensus       288 vG~ivs~n~~l~~~~~~~~~~~--~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~g-i-----~~-  358 (447)
T PLN02607        288 VGTIYSYNDKVVTTARRMSSFT--LVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAG-I-----EC-  358 (447)
T ss_pred             EEEEEEcCHHHHHHHHHHhhcC--CCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCC-C-----Cc-
Confidence            9999996665655444433222  2233344444444332       12223344445555556665431 1     00 


Q ss_pred             CCCCchHHHhhhccCCCceEEEEeCCH------HHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcC
Q 021783          204 PEHPGHELHYSQAKGAGSVLSFLTGSL------ALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG  276 (307)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~  276 (307)
                        .        . ...+.++|+.++..      +...++.+.+ +..||.+.+|..|..                     
T Consensus       359 --~--------~-~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~---------------------  406 (447)
T PLN02607        359 --L--------K-GNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHC---------------------  406 (447)
T ss_pred             --c--------c-CCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCC---------------------
Confidence              0        1 12356777776421      2234555454 457999999876321                     


Q ss_pred             CCCCeEEEEecc---CChHHHHHHHHHHHhc
Q 021783          277 LTEDLVRISVGI---EDVNDLISDLDKALRT  304 (307)
Q Consensus       277 ~~~~~iRis~~~---~~~~~~i~~l~~~l~~  304 (307)
                      ..++|+||+++.   +++++.+++|.+++++
T Consensus       407 ~~~g~fRi~fa~~~~~~l~~gl~Ri~~~l~~  437 (447)
T PLN02607        407 SEPGWFRVCFANMSEDTLEVALKRIHRFMDR  437 (447)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence            136899999995   5666777777777653

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.94  E-value=1.7e-24  Score=194.10  Aligned_cols=255  Identities=13%  Similarity=0.106  Sum_probs=164.1

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcc-cCCcEEEEecCC-------ChHHHHhhc------CCCceEEEEe
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP-KTGVVVKRVNTC-------DLDEVASAI------GPWTKLVWVE   67 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~-------d~~~l~~~l------~~~~~~v~~~   67 (307)
                      |+ .++.++++|||.|++++|.|+.+.    ..++ ..|++++.++++       |++++++++      ..++++++++
T Consensus       131 al~~l~~~l~~pGD~Vlv~~P~Y~~~~----~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~  206 (496)
T PLN02376        131 ANETIMFCLADPGDVFLIPSPYYAAFD----RDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILT  206 (496)
T ss_pred             HHHHHHHHhCCCCCEEEECCCCccchH----HHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEc
Confidence            45 455668899999999999999887    3344 579999999872       567776543      2478999999


Q ss_pred             CCCCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-----C---c-cCC-------CccEEEeccccccccCCC
Q 021783           68 SPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----R---P-LEL-------GADIVMHSATKFIAGHSD  128 (307)
Q Consensus        68 ~~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-----~---~-~~~-------~~d~~~~s~~K~~~g~~g  128 (307)
                      +|+||||.+++   +++|+++|++||+++|+|++|+...+.     .   . ...       +..+++.||||.+ |.+|
T Consensus       207 nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~-glpG  285 (496)
T PLN02376        207 NPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDM-GLPG  285 (496)
T ss_pred             CCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccC-CCCc
Confidence            99999999997   778899999999999999999743211     1   1 000       1345689999999 7789


Q ss_pred             ceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhcccc--H-HHH----HHHHHHHHHHHHHHHhcCCCccEEecC
Q 021783          129 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT--M-ALR----VEKQQDNAQKIAEFLASHPRVKKVNYA  201 (307)
Q Consensus       129 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~-~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~  201 (307)
                      +|+||++.+++.+.+.........  ..+...+.++...++.  + +..    .+.+.+..+.+.+.|++.         
T Consensus       286 lRvG~li~~~~~l~~~~~~~~~~~--~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~---------  354 (496)
T PLN02376        286 FRVGIVYSFNDSVVSCARKMSSFG--LVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA---------  354 (496)
T ss_pred             ceEEEEEECCHHHHHHHHHHhhcC--CCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
Confidence            999999997676666554443222  2344455554444432  1 111    222233333444444432         


Q ss_pred             CCCCCCchHHHhhhccCCCceEEEEeCCH-------HHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHH
Q 021783          202 GLPEHPGHELHYSQAKGAGSVLSFLTGSL-------ALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQ  273 (307)
Q Consensus       202 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~  273 (307)
                      ++.-.        . ...|.++|+.++..       +...++.+.+. ..||.+++|..|..                  
T Consensus       355 gi~~~--------~-~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~------------------  407 (496)
T PLN02376        355 DIACL--------T-SNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRC------------------  407 (496)
T ss_pred             CCccc--------C-CCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCC------------------
Confidence            11100        1 12356777777421       12245555554 46999999887431                  


Q ss_pred             hcCCCCCeEEEEecc---CChHHHHHHHHHHHh
Q 021783          274 ARGLTEDLVRISVGI---EDVNDLISDLDKALR  303 (307)
Q Consensus       274 ~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~  303 (307)
                         ..++++||+++.   +.++..+++|.+++.
T Consensus       408 ---~~~g~~Ri~fa~~~~~~l~~al~rl~~~l~  437 (496)
T PLN02376        408 ---TEPGWFRICFANMDDDTLHVALGRIQDFVS  437 (496)
T ss_pred             ---CCCCEEEEEeeCCCHHHHHHHHHHHHHHHH
Confidence               125789999985   455566666666664

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.94  E-value=5.6e-24  Score=175.38  Aligned_cols=259  Identities=19%  Similarity=0.225  Sum_probs=183.7

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC--------ChHHHHhhcC-CCceEEEEeCCCCC
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--------DLDEVASAIG-PWTKLVWVESPTNP   72 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--------d~~~l~~~l~-~~~~~v~~~~~~n~   72 (307)
                      ++ .++..+.+|||.|++..|.|++..    ...+..|-++...|+.        |+++|++.+. .+++++++|+||||
T Consensus        95 gi~~~I~~~T~~gd~Vvi~tPvY~PF~----~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP  170 (388)
T COG1168          95 GISLAIRALTKPGDGVVIQTPVYPPFY----NAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNP  170 (388)
T ss_pred             hHHHHHHHhCcCCCeeEecCCCchHHH----HHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCC
Confidence            55 466678999999999999999998    7788999999999873        9999999987 56799999999999


Q ss_pred             cccccc---HHHHHHHHHHcCCEEEEeCccCC----C--CcC----CccCCCccEEEeccccccccCCCceeEEEEEcCh
Q 021783           73 RQQICD---IRKIAEMAHAHGALLLVDNSIMS----P--VLS----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        73 tG~~~~---~~~l~~~~~~~~~~li~D~a~~~----~--~~~----~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      +|.+..   +.+|.++|.+||+.||.|+.|+.    |  +.+    +....+..+.+.|.||+| ..+|+.++++++.++
T Consensus       171 ~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtF-NlaGL~~a~~Ii~n~  249 (388)
T COG1168         171 TGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTF-NLAGLKCAYIIISNR  249 (388)
T ss_pred             CCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccc-cchhhhheeEEecCH
Confidence            999985   88999999999999999999972    2  222    122235679999999999 578999999999988


Q ss_pred             hHHHHH-HHHHHhcCCCCChhhHHHHhhcc----ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhh
Q 021783          140 RLAKEL-YFLQNAEGSGLAPFDCWICLRGV----KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS  214 (307)
Q Consensus       140 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~  214 (307)
                      .+.... ..+.......++.+......++.    .-+....+.+..|.+.+.+.+.++-             |.+++..+
T Consensus       250 ~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~-------------P~v~v~~p  316 (388)
T COG1168         250 ELRAKFLKRLKRNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHL-------------PGVKVTEP  316 (388)
T ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhC-------------CCcEEecC
Confidence            775443 44444444444443333333332    3344455666777777777777551             22222211


Q ss_pred             hccCCCceEEEEeCCH----HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--
Q 021783          215 QAKGAGSVLSFLTGSL----ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--  288 (307)
Q Consensus       215 ~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--  288 (307)
                      +   ...+.|+.+...    +..++++  +.+.++.++.|..|..                     .+++++|++++.  
T Consensus       317 ~---gTYL~WLD~r~l~l~d~~l~~~l--l~~akVal~~G~~FG~---------------------~g~gf~RlN~acpr  370 (388)
T COG1168         317 Q---GTYLAWLDCRELGLDDSELAEFL--LEEAKVALSPGSTFGE---------------------EGSGFVRLNFACPR  370 (388)
T ss_pred             C---CceeeeeeccccCCChHHHHHHH--HHhhcEeccCCCccCc---------------------CCCceEEEecCCCH
Confidence            1   356777766321    1233333  3344688888887432                     247899999975  


Q ss_pred             CChHHHHHHHHHHHhcC
Q 021783          289 EDVNDLISDLDKALRTG  305 (307)
Q Consensus       289 ~~~~~~i~~l~~~l~~~  305 (307)
                      .-.++.+++++++|++.
T Consensus       371 ~~L~eal~ri~~al~~~  387 (388)
T COG1168         371 AILEEALERLKRALKKR  387 (388)
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            78888999999888764

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.94  E-value=7.2e-25  Score=193.81  Aligned_cols=255  Identities=16%  Similarity=0.111  Sum_probs=159.8

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcE-----------EEEecCCChHHHHhhc-CCCceEEEEeCCC
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV-----------VKRVNTCDLDEVASAI-GPWTKLVWVESPT   70 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~-----------~~~v~~~d~~~l~~~l-~~~~~~v~~~~~~   70 (307)
                      ++.++..++.|||+|++++|+|+.+.    ..++..|.+           ++.++.+.-+.+...+ .++++++++++|+
T Consensus       111 al~~l~~~~~~gd~V~v~~P~Y~~~~----~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~k~i~l~nP~  186 (409)
T PRK07590        111 DTGNILDIFGPDNTIAVTDPVYPVYV----DTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELPEEKVDIIYLCFPN  186 (409)
T ss_pred             HHHHHHHhcCCCCEEEEeCCCCcchH----HHHHHcCCcccccccccccceeEeecccccCCcccCcccCceEEEEeCCC
Confidence            45455567799999999999999888    556677776           7888764211222222 2688999999999


Q ss_pred             CCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCc-----C---CccC-CCccEEEeccccccccCCCceeEEEEEcC
Q 021783           71 NPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL-----S---RPLE-LGADIVMHSATKFIAGHSDVMAGVLAVKG  138 (307)
Q Consensus        71 n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~-----~---~~~~-~~~d~~~~s~~K~~~g~~g~~~G~~~~~~  138 (307)
                      ||||.+++   +++|+++|++||++||+|++|+.-..     .   .... .+..++++||||.+ |.+|+|+||+++++
T Consensus       187 NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~~pGlRiG~~i~~~  265 (409)
T PRK07590        187 NPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTA-GFTGTRCAYTVVPK  265 (409)
T ss_pred             CCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCcccc-CCcCceeEEEEcCH
Confidence            99999997   77888889999999999999973211     1   1111 13578999999999 67899999999986


Q ss_pred             hhHHH-----------HHHHHHHhcCCCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCC
Q 021783          139 ERLAK-----------ELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG  202 (307)
Q Consensus       139 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  202 (307)
                      +.+..           .............+...+..+...+.     .+....+.+.++.+.+.+.|+.+. + .+    
T Consensus       266 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~-~~----  339 (409)
T PRK07590        266 ELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLESAG-F-EV----  339 (409)
T ss_pred             HHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcC-C-ce----
Confidence            65431           11111111112234344444433332     223334445555666666666431 1 00    


Q ss_pred             CCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCe
Q 021783          203 LPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL  281 (307)
Q Consensus       203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  281 (307)
                         .        . ...+.++|+.+++.....++.+.+ +..||.+.+|..|..                     ..+++
T Consensus       340 ---~--------~-~~g~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~---------------------~~~~~  386 (409)
T PRK07590        340 ---Y--------G-GVNAPYIWVKTPDGMSSWDFFDKLLQEANVVGTPGSGFGP---------------------SGEGY  386 (409)
T ss_pred             ---e--------c-CCcceEEEEECCCCCCHHHHHHHHHHHCCEEEeChhHhCC---------------------CCCCE
Confidence               0        0 113567788886432355666655 456898888876321                     12468


Q ss_pred             EEEEecc--CChHHHHHHHHHH
Q 021783          282 VRISVGI--EDVNDLISDLDKA  301 (307)
Q Consensus       282 iRis~~~--~~~~~~i~~l~~~  301 (307)
                      +||++..  +++++.++.|.++
T Consensus       387 iRi~~~~~~~~l~~~l~rl~~~  408 (409)
T PRK07590        387 FRLSAFGSRENVLEAMERIKKA  408 (409)
T ss_pred             EEEEccCCHHHHHHHHHHHHhh
Confidence            9999743  4555555555543

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.94  E-value=2.6e-25  Score=192.79  Aligned_cols=245  Identities=19%  Similarity=0.215  Sum_probs=167.6

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      .++.+++++||+|++++|+|+.+.    ..++..|++++.++.+     |++++++.+.+++++|++++|+||||...+.
T Consensus        86 ~~~~~l~~~gd~v~~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~  161 (346)
T TIGR01141        86 LLIRAFLEPGDAVLVPPPTYSMYE----ISAKIHGAEVVKVPLDEDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSR  161 (346)
T ss_pred             HHHHHhcCCCCEEEEcCCCHHHHH----HHHHHcCCeEEEeccCCCCCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCH
Confidence            344557799999999999997555    4567789999999863     7899999888889999999999999999999


Q ss_pred             HHHHHHHHHc--CCEEEEeCccCCCCc-----CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhc
Q 021783           80 RKIAEMAHAH--GALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE  152 (307)
Q Consensus        80 ~~l~~~~~~~--~~~li~D~a~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~  152 (307)
                      +++.++++.+  |+++|+|++|+.-..     ......+.+++++|+||++ |.+|+|+|+++.+++ +.+.+...... 
T Consensus       162 ~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~~~~~~~-~~~~~~~~~~~-  238 (346)
T TIGR01141       162 SDIEAVLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAF-GLAGLRIGYAIANAE-IIDALNKVRAP-  238 (346)
T ss_pred             HHHHHHHHhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHhh-hchhhhceeeecCHH-HHHHHHhccCC-
Confidence            9999999887  999999999872111     1111234578899999999 567899999998754 44444433221 


Q ss_pred             CCCCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC
Q 021783          153 GSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  229 (307)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (307)
                       ...+...+..+...++.   +....+.+.++.+.+.+.|++.+++              ++.    ...+.++++.+++
T Consensus       239 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~--------------~~~----~~~g~~~~~~~~~  299 (346)
T TIGR01141       239 -FNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKLPGL--------------EVY----PSDANFVLIRFPR  299 (346)
T ss_pred             -CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------------EEC----CCcCCEEEEecCC
Confidence             22233333433333333   2333445555666666666544322              100    1136788888865


Q ss_pred             HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHH
Q 021783          230 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  302 (307)
Q Consensus       230 ~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l  302 (307)
                        +.+++.+.|.++||.+.+|..|.                     +. ++++|+|++.   ++.++.+.++|
T Consensus       300 --~~~~~~~~L~~~gI~v~~g~~f~---------------------~~-~~~iRls~~~---~~~i~~~~~~l  345 (346)
T TIGR01141       300 --DADALFEALLEKGIIVRDLNSYP---------------------GL-PNCLRITVGT---REENDRFLAAL  345 (346)
T ss_pred             --CHHHHHHHHHHCCeEEEeCCCcC---------------------CC-CCeEEEecCC---HHHHHHHHHHh
Confidence              46778888888899998876531                     11 5679999983   44555555544

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK06855 aminotransferase; Validated

Probab=99.94  E-value=1.8e-24  Score=192.09  Aligned_cols=259  Identities=15%  Similarity=0.140  Sum_probs=161.3

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcC--CCceEEEEeCCCCCc
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG--PWTKLVWVESPTNPR   73 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~--~~~~~v~~~~~~n~t   73 (307)
                      |+..+..+++|||+|++++|+|+.+...   .....|++++.++.+       |++++++.+.  ++++++++++|+|||
T Consensus       108 al~~~~~l~~~Gd~Vlv~~P~Y~~~~~~---~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPT  184 (433)
T PRK06855        108 AIAKIYGLLRREARVIGPSPAYSTHSSA---EAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPT  184 (433)
T ss_pred             HHHHHHHhcCCCCeEEEeCCCCchHHHH---HHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCC
Confidence            4544445789999999999999875421   123457887777642       7899999986  468999999999999


Q ss_pred             ccccc---HHHHHHHHHHcCCEEEEeCccCCCCc-----CC---ccCCCccEEEeccccccccCCCceeEEEEEcC----
Q 021783           74 QQICD---IRKIAEMAHAHGALLLVDNSIMSPVL-----SR---PLELGADIVMHSATKFIAGHSDVMAGVLAVKG----  138 (307)
Q Consensus        74 G~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~-----~~---~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~----  138 (307)
                      |.+++   +++|+++|++||++||+|++|+.-.+     +.   ....+..++++||||.+ +.+|+|+||+++++    
T Consensus       185 G~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~-~~pGlRiG~ii~p~~~~~  263 (433)
T PRK06855        185 GAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKEL-PWPGSRCGWIEVYNADKD  263 (433)
T ss_pred             CcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCcccc-CCCcceEEEEEEeCCchh
Confidence            99997   77888999999999999999973221     11   11113469999999999 66899999999842    


Q ss_pred             hhHHHHHHHHHHh--cCCCCChhhHHHHhhcccc------HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchH
Q 021783          139 ERLAKELYFLQNA--EGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE  210 (307)
Q Consensus       139 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~  210 (307)
                      +.+.+........  .....+...+..+...++.      ++...+.+.++.+.+.+.|++.+.+              .
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~--------------~  329 (433)
T PRK06855        264 EVFKKYINSILNAKMIEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGL--------------K  329 (433)
T ss_pred             hHHHHHHHHHHHhhccccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCe--------------e
Confidence            2222222222111  1122334455555555432      2233344445555555556543211              1


Q ss_pred             HHhhhccCCCceEEEEeCCHH---------------------------HHHHHH-hcCCcceeecCCCCccceeeccccc
Q 021783          211 LHYSQAKGAGSVLSFLTGSLA---------------------------LSKHVV-ETTKYFSITVSFGSVKSLISMPCFM  262 (307)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~-~~l~~~gi~v~~g~~~~~~~~p~~~  262 (307)
                      ..  . ...+.++|+.+++..                           ....+. ..+...||.+.+|..|..       
T Consensus       330 ~~--~-p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~-------  399 (433)
T PRK06855        330 VN--R-TNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCT-------  399 (433)
T ss_pred             cc--C-CCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCC-------
Confidence            00  1 113456666665310                           122333 335667999999887531       


Q ss_pred             CCCCCcHHHHHhcCCCCCeEEEEecc---CChHHHHHHHHHHHhc
Q 021783          263 SHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALRT  304 (307)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~  304 (307)
                                     ..+.+|||++.   +++++.++.|.+++++
T Consensus       400 ---------------~~~~~Rls~~~~~~~~i~~~~~~l~~~~~~  429 (433)
T PRK06855        400 ---------------ELNGFRVTLLERDEEKFEWIYQTLAEKIEE  429 (433)
T ss_pred             ---------------CCCceEEEECCCcHHHHHHHHHHHHHHHHH
Confidence                           12349999985   5666667777766653

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.94  E-value=1.2e-24  Score=192.01  Aligned_cols=254  Identities=16%  Similarity=0.147  Sum_probs=159.1

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCc-----------EEEEecCCChHHHHhhc--CCCceEEEEeCC
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV-----------VVKRVNTCDLDEVASAI--GPWTKLVWVESP   69 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~-----------~~~~v~~~d~~~l~~~l--~~~~~~v~~~~~   69 (307)
                      ++.++..++.+||+|++++|+|+.+.    ..++..|+           +++.++.++.+.+...+  .++++++++++|
T Consensus       107 al~~l~~l~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~l~nP  182 (402)
T TIGR03542       107 DVFRLQSLFGSDNTVAVQDPVYPAYV----DSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPEEPKIDIIYLCSP  182 (402)
T ss_pred             HHHHHHHhcCCCCEEEEeCCCCcchH----HHHHHcCCccccccccccceEEEeecchhhCCCCCccccCCceEEEEeCC
Confidence            44455567789999999999998887    66677888           88888764222221112  157899999999


Q ss_pred             CCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCc----C-Cc---cC-CCccEEEeccccccccCCCceeEEEEEc
Q 021783           70 TNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL----S-RP---LE-LGADIVMHSATKFIAGHSDVMAGVLAVK  137 (307)
Q Consensus        70 ~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~----~-~~---~~-~~~d~~~~s~~K~~~g~~g~~~G~~~~~  137 (307)
                      +||||.+++   +++|+++|++||++||+|++|.....    + ..   .. .+..++++||||.+ |.+|+|+||++++
T Consensus       183 ~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-g~pGlRiG~~i~~  261 (402)
T TIGR03542       183 NNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTA-GFTGVRLGWTVVP  261 (402)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCcccc-CCCCcceEEEEec
Confidence            999999997   88899999999999999999973211    1 11   11 24578899999999 6789999999998


Q ss_pred             ChhHH-------HHHHHHHHhcCCCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCC
Q 021783          138 GERLA-------KELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE  205 (307)
Q Consensus       138 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~  205 (307)
                      ++...       ..............+...+..+...+.     .+....+...++.+.+.+.|+... + .+       
T Consensus       262 ~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~-~~-------  332 (402)
T TIGR03542       262 KELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAAG-F-KV-------  332 (402)
T ss_pred             HHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhcC-c-ee-------
Confidence            66431       111111111122233334433333332     122233444555556666665431 1 00       


Q ss_pred             CCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEE
Q 021783          206 HPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI  284 (307)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRi  284 (307)
                      .        . ...+.++++++++..+..++.+.+. ..||.+.+|..|..                     ..++++||
T Consensus       333 ~--------~-~~~~~f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~~---------------------~~~~~iRi  382 (402)
T TIGR03542       333 Y--------G-GEHAPYLWVKTPEGISSWDFFDFLLYQYHVVGTPGSGFGP---------------------SGEGFVRF  382 (402)
T ss_pred             c--------C-CCceeEEEEECCCCCCHHHHHHHHHHhCCEEEeCchhhCC---------------------CCCCEEEE
Confidence            0        0 1135688888865333556777654 56999988876421                     02578999


Q ss_pred             Eecc--CChHHHHHHHHH
Q 021783          285 SVGI--EDVNDLISDLDK  300 (307)
Q Consensus       285 s~~~--~~~~~~i~~l~~  300 (307)
                      +++.  +++++.++.|++
T Consensus       383 s~~~~~~~l~~~l~~l~~  400 (402)
T TIGR03542       383 SAFGKRENIVEACERIKE  400 (402)
T ss_pred             EecCCHHHHHHHHHHHHh
Confidence            9854  344444444443

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.94  E-value=1.1e-24  Score=189.64  Aligned_cols=132  Identities=23%  Similarity=0.262  Sum_probs=111.8

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcC-------CCceEEEEeCCC
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG-------PWTKLVWVESPT   70 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~-------~~~~~v~~~~~~   70 (307)
                      .++.+++++||+|+++.++|.+..    ..++..|++++.++.+       |+++++++++       ++++++++++|+
T Consensus        74 ~~l~~~~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~  149 (361)
T cd06452          74 AVMHSLCEKGDWVVVDGLAHYTSY----VAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVD  149 (361)
T ss_pred             HHHHHhcCCCCEEEEcCCcchHHH----HHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCC
Confidence            455667899999999999998887    4467889999998753       6788988875       378999999999


Q ss_pred             CCccccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHH
Q 021783           71 NPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  142 (307)
Q Consensus        71 n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~  142 (307)
                      ||||...|+++|.++|+++|+++|+|++|+.+..+ ....+++|++++|+||+++++.  ++|+++++++...
T Consensus       150 n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~--~~G~l~~~~~~~~  220 (361)
T cd06452         150 GNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASA--PIGVLATTEEWAD  220 (361)
T ss_pred             CCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCCHHHcCCCEEEecCCccccCCC--CeEEEEECHHHHH
Confidence            99999999999999999999999999999988765 5666789999999999996444  5999999865443

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=9.8e-25  Score=189.67  Aligned_cols=248  Identities=14%  Similarity=0.142  Sum_probs=166.6

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCcccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQI   76 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~   76 (307)
                      ++ .++.++++|||+|++++|+|+.+.    ..++..|++++.++.+     |++++++    +++++++++|+||||.+
T Consensus        89 al~~~~~~l~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~----~~~~v~~~~P~NPtG~~  160 (353)
T PRK05387         89 VLAHAFLAFFNHDRPLLFPDITYSFYP----VYAGLYGIPYEEIPLDDDFSIDVEDYLR----PNGGIIFPNPNAPTGIA  160 (353)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCHHHHH----HHHHHcCCEEEEeecCCCCCCCHHHHHh----cCCEEEEeCCCCCCCCC
Confidence            44 344567899999999999997666    5567789999998874     5666653    45788999999999999


Q ss_pred             ccHHHHHHHHHHc-CCEEEEeCccCCCC----cCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHh
Q 021783           77 CDIRKIAEMAHAH-GALLLVDNSIMSPV----LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  151 (307)
Q Consensus        77 ~~~~~l~~~~~~~-~~~li~D~a~~~~~----~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~  151 (307)
                      ++.+++.++++.+ ++++|+|++|....    .+.....+.+++++|+||.+ |.+|+|+||++++++ +.+.+......
T Consensus       161 ~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlR~G~~~~~~~-~~~~l~~~~~~  238 (353)
T PRK05387        161 LPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSR-SLAGLRVGFAIGHPE-LIEALNRVKNS  238 (353)
T ss_pred             CCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhh-cchhhhceeeecCHH-HHHHHHHhhcc
Confidence            9999999999886 99999999986211    11112345789999999999 678999999998744 54445444332


Q ss_pred             c-CCCCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEe
Q 021783          152 E-GSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  227 (307)
Q Consensus       152 ~-~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  227 (307)
                      . ....+...+..+...+..   ++...+++.++.+.+.+.|++.. + .+ .                ...++++++.+
T Consensus       239 ~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-~~-~----------------~~~~~~~~~~~  299 (353)
T PRK05387        239 FNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEALG-F-EV-L----------------PSKANFVFARH  299 (353)
T ss_pred             CCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC-C-eE-C----------------CCcCcEEEEEC
Confidence            2 223344455544444432   23334445555566666665431 1 10 1                11356777776


Q ss_pred             CCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHh
Q 021783          228 GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALR  303 (307)
Q Consensus       228 ~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~  303 (307)
                      ++.+ ..++.+.|.++||.++....      +                 ..++++|+|++. ++++++++.|.+++.
T Consensus       300 ~~~~-~~~~~~~l~~~gi~v~~~~~------~-----------------~~~~~iRis~~~~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        300 PSHD-AAELAAKLRERGIIVRHFNK------P-----------------RIDQFLRITIGTDEEMEALVDALKEILA  352 (353)
T ss_pred             CCCC-HHHHHHHHHHCCEEEEECCC------C-----------------CCCCeEEEEeCCHHHHHHHHHHHHHHhh
Confidence            6433 67788888888998753110      0                 124679999985 667777777777654

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.93  E-value=3.5e-25  Score=194.92  Aligned_cols=260  Identities=16%  Similarity=0.126  Sum_probs=174.6

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCC----CceEEEEeCCCCCccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP----WTKLVWVESPTNPRQQ   75 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~----~~~~v~~~~~~n~tG~   75 (307)
                      .++..++++||+|++++++|++..  |...++..|++++.++.+     |++++++.+++    ++++|+++|++|+||.
T Consensus        75 ~a~~~~~~~Gd~Vlv~~~~~~~~~--~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~  152 (401)
T PLN02409         75 SALTNTLSPGDKVVSFRIGQFSLL--WIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGV  152 (401)
T ss_pred             HHHHhcCCCCCEEEEeCCCchhHH--HHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccc
Confidence            445567899999999999887654  446778889999999864     68999999874    7999999999999999


Q ss_pred             cccHHHHHHH--HHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH-----
Q 021783           76 ICDIRKIAEM--AHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-----  147 (307)
Q Consensus        76 ~~~~~~l~~~--~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~-----  147 (307)
                      +.|+++|.++  |+++|+++++|++|+.|..+ +..++++|++++|+|||+++|+|  .|+++++++.+......     
T Consensus       153 ~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~~K~l~~P~G--~G~l~~~~~~~~~~~~~~~~~~  230 (401)
T PLN02409        153 TNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVALTGSQKALSLPTG--LGIVCASPKALEASKTAKSPRV  230 (401)
T ss_pred             cCCHHHHHHHHhhhccCcEEEEEcccccCCccccccccCccEEEEcCccccCcCCC--cceeEECHHHHHHHhcCCCCCe
Confidence            9999999999  99999999999999988877 77788999999999999999888  99999986654332110     


Q ss_pred             ------HH-H-hcC----CCCChhhHHHHhhccccH-----HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchH
Q 021783          148 ------LQ-N-AEG----SGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE  210 (307)
Q Consensus       148 ------~~-~-~~~----~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~  210 (307)
                            .. . ..+    .+++....+....+++.+     +...++..+..+.+.+.++.. ++              +
T Consensus       231 ~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~-g~--------------~  295 (401)
T PLN02409        231 FFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW-GL--------------K  295 (401)
T ss_pred             ecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CC--------------e
Confidence                  00 0 011    122222233333333322     222333344444455555432 11              1


Q ss_pred             HHhhhccC-CCceEEEEeCCHHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc
Q 021783          211 LHYSQAKG-AGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  288 (307)
Q Consensus       211 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~  288 (307)
                      +..+.+.. ...++++.++...+..++.+.+ ..+||.+..|...                       .....+||+..-
T Consensus       296 ~~~~~~~~~s~~v~~~~~p~~~~~~~l~~~l~~~~~i~i~~G~~~-----------------------~~~~~~Rig~~g  352 (401)
T PLN02409        296 LCTKKPEWRSDTVTAVVVPEGIDSAEIVKNAWKKYNLSLGLGLNK-----------------------VAGKVFRIGHLG  352 (401)
T ss_pred             eccCChhhcccceEEEeCCCCCCHHHHHHHHHHhCCEEEEcCCCc-----------------------ccCCEEEEcCCC
Confidence            11111111 2345667664322355666555 4568888776530                       024569999953


Q ss_pred             ----CChHHHHHHHHHHHhcCC
Q 021783          289 ----EDVNDLISDLDKALRTGP  306 (307)
Q Consensus       289 ----~~~~~~i~~l~~~l~~~~  306 (307)
                          +|+...++.|.++|++++
T Consensus       353 ~~~~~~~~~~~~~~~~~l~~~g  374 (401)
T PLN02409        353 NVNELQLLGALAGVEMVLKDVG  374 (401)
T ss_pred             CCCHHHHHHHHHHHHHHHHHcC
Confidence                677777888888887654

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=1.4e-24  Score=189.39  Aligned_cols=252  Identities=20%  Similarity=0.198  Sum_probs=169.0

Q ss_pred             HHHHH-HHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcC-CCceEEEEeCCCCCcccc
Q 021783            3 ALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIG-PWTKLVWVESPTNPRQQI   76 (307)
Q Consensus         3 al~~~-~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~-~~~~~v~~~~~~n~tG~~   76 (307)
                      ++..+ ..+++|||.|++++|+|+.+.    ..++..|++++.+|.+    |++++.+.+. .+++++++++|+||||.+
T Consensus        96 ~l~~~~~~~~~~gd~vlv~~p~y~~~~----~~~~~~g~~~~~vp~~~~~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~  171 (369)
T PRK08153         96 LLGLIVRLYVEPGDPVVTSLGAYPTFN----YHVAGFGGRLVTVPYRDDREDLDALLDAARRENAPLVYLANPDNPMGSW  171 (369)
T ss_pred             HHHHHHHHhcCCCCEEEECCCcchHHH----HHHHHcCCeEEEeeCCCCCCCHHHHHHHhcccCCcEEEEeCCCCCCCCC
Confidence            44333 346899999999999998877    4456689999988863    6777776664 688999999999999999


Q ss_pred             ccHHHHHHHHHHc--CCEEEEeCccCCCCc----CCc-cCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           77 CDIRKIAEMAHAH--GALLLVDNSIMSPVL----SRP-LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        77 ~~~~~l~~~~~~~--~~~li~D~a~~~~~~----~~~-~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                      ++.+++.++++.+  ++++|+|++|.....    ... ...+..++++||||.+ |.+|+|+||++++++ +.+.+....
T Consensus       172 ~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-g~~GlRiG~~v~~~~-~~~~l~~~~  249 (369)
T PRK08153        172 HPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKAY-GLAGARVGYAIGAPG-TIKAFDKVR  249 (369)
T ss_pred             CCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCEEEEecchHhc-cCcchheeeeecCHH-HHHHHHHhh
Confidence            9988777777655  899999999963221    111 1234679999999999 678999999999754 444444433


Q ss_pred             HhcCCCCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEE
Q 021783          150 NAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  226 (307)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  226 (307)
                      ..  ...+...+..+...++.   +....+...++.+.+.+.+++..         +...          ...++++++.
T Consensus       250 ~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~g---------~~~~----------p~~~~f~~~~  308 (369)
T PRK08153        250 NH--FGMNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARANG---------LTPL----------PSATNFVAID  308 (369)
T ss_pred             cC--CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC---------CccC----------CCcCcEEEEE
Confidence            22  23455566665555542   12223333444444555554321         1000          1235677777


Q ss_pred             eC-CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHhc
Q 021783          227 TG-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALRT  304 (307)
Q Consensus       227 ~~-~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~~  304 (307)
                      ++ +.+.+..+.+++..+||.++.....                       ..++++|||++. ++++.+++.|.+.+..
T Consensus       309 ~~~~~~~a~~l~~~l~~~Gi~v~~p~~~-----------------------~~~~~iRis~~~~~~~~~~~~al~~~~~~  365 (369)
T PRK08153        309 CGRDGAFARAVLDGLIARDIFVRMPGVA-----------------------PLDRCIRVSCGPDEELDLFAEALPEALEA  365 (369)
T ss_pred             CCCCcccHHHHHHHHHHCCeEEeeCCCC-----------------------CCCCeEEEecCCHHHHHHHHHHHHHHHHH
Confidence            64 3345788898888899988532210                       024679999986 7888888888887753

>PRK08354 putative aminotransferase; Provisional

Probab=99.93  E-value=1.7e-24  Score=184.49  Aligned_cols=239  Identities=17%  Similarity=0.164  Sum_probs=153.9

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCcccccc---H
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD---I   79 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~---~   79 (307)
                      |+.++..++.+||+|++++|+|+.+.    ..++..|++++.++ .|++.+++.++ +++++++++|+||||.+++   +
T Consensus        66 al~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~~~-~d~~~l~~~~~-~~~~vi~~~P~NPTG~~~~~~~l  139 (311)
T PRK08354         66 ALYLIGILALRDRKVIIPRHTYGEYE----RVARFFAARIIKGP-NDPEKLEELVE-RNSVVFFCNPNNPDGKFYNFKEL  139 (311)
T ss_pred             HHHHHHHhhCCCCeEEEeCCCcHHHH----HHHHHcCCEEeecC-CCHHHHHHhhc-CCCEEEEecCCCCCCCccCHHHH
Confidence            34334455568999999999999888    66788999998876 47888988876 5678999999999999997   6


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCCh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP  158 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (307)
                      ++|+++|+++|+++|+|++|...... .....+..++++||||.+ +.+|+|.||+++    ..+.+......  ...+.
T Consensus       140 ~~l~~~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~-~l~GlRiG~~v~----~~~~l~~~~~~--~~~~~  212 (311)
T PRK08354        140 KPLLDAVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSY-GLPGIRVGYVKG----FEEAFRSVRMP--WSIGS  212 (311)
T ss_pred             HHHHHHhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhc-CCccceeeeeee----hHHHHHHcCCC--ccCCH
Confidence            77788889999999999999644322 112246789999999999 778999999998    22223322211  12222


Q ss_pred             hhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHh
Q 021783          159 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVE  238 (307)
Q Consensus       159 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (307)
                      ....++...++.   ..+.+.++.+.+.+..+...   ..    +. .          ...++++++.+.+   ..++.+
T Consensus       213 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~---~~----l~-~----------~~~~~~~~~~~~~---~~~~~~  268 (311)
T PRK08354        213 TGYAFLEFLIED---DFEHLRKTMPLIWREKERFE---KA----LY-V----------KSDANFFIKDVGD---AEKFVE  268 (311)
T ss_pred             HHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHH---Hh----cC-C----------CCCCcEEEEECCC---HHHHHH
Confidence            222222222221   11222222222222211110   00    00 0          1135566666542   456777


Q ss_pred             cCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHH
Q 021783          239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKA  301 (307)
Q Consensus       239 ~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~  301 (307)
                      .+.++||.++.|..|.                       .++++||+++. ++.+++++.|++.
T Consensus       269 ~l~~~gv~v~~g~~f~-----------------------~~~~iRi~~~~~~~~~~l~~al~~~  309 (311)
T PRK08354        269 FLKRNGILVRDCTSFG-----------------------LPGYIRFSVRDREENEKLIRALREW  309 (311)
T ss_pred             HHHHCCeEEEecccCC-----------------------CCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            7788899999987632                       14679999996 4567777776654

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=3.6e-25  Score=192.10  Aligned_cols=244  Identities=16%  Similarity=0.160  Sum_probs=159.2

Q ss_pred             HHH-HHHHhcCCC-CeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccc
Q 021783            3 ALA-AVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         3 al~-~~~~~~~~g-d~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~   75 (307)
                      ++. ++.+++++| |+|++++|+|+.+.    ..++..|++++.+|.+     |++.++ .+ +++++|++++|+||||.
T Consensus        89 ~i~~~~~~~~~~g~d~vlv~~P~y~~y~----~~~~~~g~~v~~v~~~~~~~~~~~~l~-~~-~~~~li~i~nP~NPTG~  162 (354)
T PRK04635         89 AIELLIRAFCEPGQDSIACFGPTYGMYA----ISAETFNVGVKALPLTADYQLPLDYIE-QL-DGAKLVFICNPNNPTGT  162 (354)
T ss_pred             HHHHHHHHhcCCCCCeEEEcCCChHHHH----HHHHHcCCEEEEEecCCCCCCCHHHHH-hc-cCCCEEEEeCCCCCCCc
Confidence            453 334567888 99999999998766    5577889999999874     566665 33 68999999999999999


Q ss_pred             cccHHHHHHHHHHc-CCEEEEeCccCCCCcC-----CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           76 ICDIRKIAEMAHAH-GALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        76 ~~~~~~l~~~~~~~-~~~li~D~a~~~~~~~-----~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                      +++.+++.++++.. ++++|+|++|......     .....+..++++||||++ |.+|+|.||++++++ +.+.+....
T Consensus       163 ~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S~SK~~-~l~GlRlG~~i~~~~-~~~~l~~~~  240 (354)
T PRK04635        163 VIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRTLSKAF-ALAGARCGFTLANEE-LIEILMRVI  240 (354)
T ss_pred             cCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCEEEEechHHHh-hhhHHHHhhhhCCHH-HHHHHHhhc
Confidence            99999999998874 7999999999643211     112235678999999999 778999999998755 434333322


Q ss_pred             HhcCCCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEE
Q 021783          150 NAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  224 (307)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  224 (307)
                      .  ....+...+..+...+.     .+....+.+.++.+.+.+.|++.+.+              ++.    ...+++++
T Consensus       241 ~--~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~--------------~~~----~~~g~f~~  300 (354)
T PRK04635        241 A--PYPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGA--------------KVL----EGNGNYVL  300 (354)
T ss_pred             C--CCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCc--------------eEC----CCCCcEEE
Confidence            1  12223233333333332     22333344455555666666543211              111    11356777


Q ss_pred             EEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHH
Q 021783          225 FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDK  300 (307)
Q Consensus       225 ~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~  300 (307)
                      +++++   ...+.+.+.++||.++.+..                       ...++++|||++. ++++++++.|++
T Consensus       301 ~~~~~---~~~~~~~l~~~gv~v~~~~~-----------------------~~~~~~lRis~~~~e~~~~l~~al~~  351 (354)
T PRK04635        301 AKFDD---VDAVFKALWDAGIVARAYKD-----------------------PRLANCIRFSFSNRAETDKLIGLIRN  351 (354)
T ss_pred             EECCC---HHHHHHHHHHCCEEEEECCC-----------------------CCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence            77763   44566667778898864321                       0024679999985 566666666654

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.93  E-value=7.4e-25  Score=188.27  Aligned_cols=244  Identities=18%  Similarity=0.207  Sum_probs=165.0

Q ss_pred             cHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCcccccc---
Q 021783            2 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD---   78 (307)
Q Consensus         2 aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~---   78 (307)
                      +++.++..++.+| +|++++|+|..+.    ..++..|.+++.++  |++++++.+ .+++++++++|+||||.+++   
T Consensus        75 ~~i~~~~~~l~~g-~vl~~~p~y~~~~----~~~~~~g~~~~~~~--d~~~l~~~~-~~~~~v~i~~p~NPtG~~~~~~~  146 (330)
T TIGR01140        75 EAIYLLPRLLAPG-RVLVLAPTYSEYA----RAWRAAGHEVVELP--DLDRLPAAL-EELDVLVLCNPNNPTGRLIPPET  146 (330)
T ss_pred             HHHHHHHHHhCCC-eEEEeCCCcHHHH----HHHHHcCCEEEEeC--CHHHHHhhc-ccCCEEEEeCCCCCCCCCCCHHH
Confidence            3454555567788 6999999998877    55678899999988  899999988 46789999999999999998   


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcC-Cc----cCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcC
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLS-RP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  153 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~-~~----~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~  153 (307)
                      +++|+++|+++|+++|+|++|...... ..    ...+.+++++|+||++ |.+|+|+||++++++ +.+.+.....  .
T Consensus       147 ~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~i~~~~~-~~~~l~~~~~--~  222 (330)
T TIGR01140       147 LLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKFF-GLAGLRLGFVVAHPA-LLARLREALG--P  222 (330)
T ss_pred             HHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEEEecchhh-cCchhhhhheeCCHH-HHHHHHhcCC--C
Confidence            777889999999999999999643321 11    1236789999999999 677999999999865 4444443322  1


Q ss_pred             CCCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH
Q 021783          154 SGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  230 (307)
Q Consensus       154 ~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (307)
                      ...+...+..+...++.   .....+.+.++.+.+.+.|+..+.+ .             .   . .+.+.++++.+++ 
T Consensus       223 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~-------------~---~-~~~~~f~~~~~~~-  283 (330)
T TIGR01140       223 WTVNGPARAAGRAALADTAWQAATRARLAAERARLAALLARLGGL-E-------------V---V-GGTALFLLVRTPD-  283 (330)
T ss_pred             CCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCCCc-e-------------E---C-CCCCeEEEEEcCC-
Confidence            22333444444433332   1223445555556666666654321 0             0   0 1235677777653 


Q ss_pred             HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHH
Q 021783          231 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  302 (307)
Q Consensus       231 ~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l  302 (307)
                        ..++.+.|.++||.+.+|..|.                     +...+++||+++..+  +. +.|.++|
T Consensus       284 --~~~l~~~l~~~gi~v~pg~~f~---------------------~~~~~~iRi~~~~~~--~~-~~~~~~l  329 (330)
T TIGR01140       284 --AAALHEALARRGILIRDFDNFP---------------------GLDPRYLRFALPTDE--EN-DRLEEAL  329 (330)
T ss_pred             --HHHHHHHHHHCCEEEEECCCCC---------------------CCCCCEEEEEecCHH--HH-HHHHHhh
Confidence              4567788888899999888742                     113467999998633  22 5554444

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK09105 putative aminotransferase; Provisional

Probab=99.93  E-value=9.6e-25  Score=190.11  Aligned_cols=243  Identities=18%  Similarity=0.225  Sum_probs=160.2

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      .++.+++++||+|++++|+|+.+.    ..++..|++++.++.+     |++++++. .++++++++++|+||||.+++.
T Consensus       110 ~~~~~l~~~gd~Vli~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~  184 (370)
T PRK09105        110 YAVLAFTSPTAGLVTADPTYEAGW----RAADAQGAPVAKVPLRADGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTPR  184 (370)
T ss_pred             HHHHHHcCCCCEEEEeCCChHHHH----HHHHHcCCeEEEecCCCCCCCCHHHHHhc-CCCCCEEEEeCCCCCCCcCcCH
Confidence            344457899999999999998887    6678899999999863     67888776 4678999999999999999998


Q ss_pred             HHHHHHHHH--cCCEEEEeCccCCCC-cC---Cc-cCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhc
Q 021783           80 RKIAEMAHA--HGALLLVDNSIMSPV-LS---RP-LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE  152 (307)
Q Consensus        80 ~~l~~~~~~--~~~~li~D~a~~~~~-~~---~~-~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~  152 (307)
                      +++.++++.  +++++|+|++|.... .+   +. ......++++||||.+ |.+|+|+||++++++ +.+.+...   .
T Consensus       185 ~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~-g~~GlRiG~~v~~~~-~i~~l~~~---~  259 (370)
T PRK09105        185 ADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLY-GMAGMRLGLAAARPD-LLAKLARF---G  259 (370)
T ss_pred             HHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHhh-cCCccceeeeecCHH-HHHHHHhc---C
Confidence            888888764  489999999995211 11   11 1234679999999999 778999999998755 43434333   1


Q ss_pred             CCCCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC
Q 021783          153 GSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  229 (307)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (307)
                      ....+...+..+...+..   ++...+...++.+.+.+.|++.. +        .      +.    ...++++++.++.
T Consensus       260 ~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~--------~------~~----~~~~~f~~~~~~~  320 (370)
T PRK09105        260 HNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKKG-Y--------K------CT----PSQANCFMVDVKR  320 (370)
T ss_pred             CCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCC-C--------C------cC----CCCCcEEEEeCCC
Confidence            222333344444444432   22233444555555666665431 1        0      00    1135566666641


Q ss_pred             HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHH
Q 021783          230 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKAL  302 (307)
Q Consensus       230 ~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l  302 (307)
                        +..++.+.|.++||.++  ..+.                      ..++++|||++. ++++++++.|.+.+
T Consensus       321 --~~~~l~~~L~~~gI~v~--~~~~----------------------~~~~~~Ris~~~~~~~~~l~~al~~~~  368 (370)
T PRK09105        321 --PAKAVADAMAKQGVFIG--RSWP----------------------IWPNWVRVTVGSEEEMAAFRSAFAKVM  368 (370)
T ss_pred             --CHHHHHHHHHHCCcEEe--cCCC----------------------CCCCeEEEEcCCHHHHHHHHHHHHHHh
Confidence              25667777777788772  2210                      025679999986 45677777776654

>PRK03321 putative aminotransferase; Provisional

Probab=99.93  E-value=3.7e-25  Score=192.13  Aligned_cols=243  Identities=16%  Similarity=0.196  Sum_probs=169.2

Q ss_pred             HHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            6 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         6 ~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      ++..+++|||+|+++.|+|..+.    ..++..|++++.++.+     |++++++.++++++++++++|+||||.++|.+
T Consensus        90 ~~~~~~~~gd~Vli~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~  165 (352)
T PRK03321         90 LVQATAGPGDEVIFAWRSFEAYP----ILVQVAGATPVQVPLTPDHTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTPA  165 (352)
T ss_pred             HHHHhcCCCCEEEeCCCCHHHHH----HHHHHcCCEEEEccCCCCCCCCHHHHHHhhccCCCEEEEeCCCCCcCCCcCHH
Confidence            34456899999999999997665    4567789999999875     78999999988999999999999999999999


Q ss_pred             HHHHHHHH--cCCEEEEeCccCCCCcC--------CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHH
Q 021783           81 KIAEMAHA--HGALLLVDNSIMSPVLS--------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  150 (307)
Q Consensus        81 ~l~~~~~~--~~~~li~D~a~~~~~~~--------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~  150 (307)
                      ++.++|++  +++++|+|++|......        .....+..++++|+||.+ |.+|+|+||++++++ +.+.+.... 
T Consensus       166 ~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~~v~~~~-~~~~~~~~~-  242 (352)
T PRK03321        166 ELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAY-GLAGLRVGYAVGHPE-VIAALRKVA-  242 (352)
T ss_pred             HHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHh-hhHHHhhhhhcCCHH-HHHHHHHhc-
Confidence            99999998  59999999999632211        111235679999999999 678999999999754 544444332 


Q ss_pred             hcCCCCChhhHHHHhhccc---cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEe
Q 021783          151 AEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  227 (307)
Q Consensus       151 ~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  227 (307)
                       .....+...+..+...+.   .+..+.++..+....+.+.|++..         +      ..   . ...+.++++.+
T Consensus       243 -~~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~~---------~------~~---~-~~~g~~i~i~l  302 (352)
T PRK03321        243 -VPFSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAALRAAG---------W------TV---P-PSQANFVWLPL  302 (352)
T ss_pred             -CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC---------C------cc---C-CCCCCEEEEeC
Confidence             223344455554444443   233333334444444555554321         1      00   0 12366778877


Q ss_pred             CCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHhc
Q 021783          228 GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALRT  304 (307)
Q Consensus       228 ~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~~  304 (307)
                      ..  ....+.+.+.++||.++.-                           +++++||+++. ++.+++++.|.++++.
T Consensus       303 ~~--~~~~~~~~l~~~gI~v~~~---------------------------~~~~iRi~~~~~~~~~~~~~al~~~~~~  351 (352)
T PRK03321        303 GE--RTADFAAAAAEAGVVVRPF---------------------------AGEGVRVTIGAPEENDAFLRAARAWRAG  351 (352)
T ss_pred             CC--CHHHHHHHHHHCCEEEEcc---------------------------CCCcEEEeeCCHHHHHHHHHHHHHHhcc
Confidence            43  2567778888889977541                           12349999986 8999999999888754

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.93  E-value=4.9e-24  Score=187.98  Aligned_cols=254  Identities=13%  Similarity=0.136  Sum_probs=164.3

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCC------CceEEEEeCCCCCcccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP------WTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~   78 (307)
                      +++.+++++||+|++++++|+++...    ++..+.+.+.++..|++++++.+++      ++++|++++++||||.+.|
T Consensus       113 ~~~~~l~~~gd~vi~~~~~~~s~~~~----~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~  188 (393)
T TIGR01822       113 GLFETLLGAEDAIISDALNHASIIDG----VRLCKAKRYRYANNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP  188 (393)
T ss_pred             HHHHHhCCCCCEEEEeccccHHHHHH----HHhcCCceEEeCCCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC
Confidence            45556789999999999999988743    4455666666677899999988863      7889999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcC-C--------ccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH-
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLS-R--------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-  148 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~-~--------~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~-  148 (307)
                      +++|.++|++||+++|+|++|+.|... .        ....++|++++|+||+++|+   ++|+++++++ +.+.+... 
T Consensus       189 l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~---r~G~~~~~~~-~~~~l~~~~  264 (393)
T TIGR01822       189 LDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGA---SGGFTTARKE-VVELLRQRS  264 (393)
T ss_pred             HHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCC---CcEEEEeCHH-HHHHHHHhC
Confidence            999999999999999999999766532 1        11125899999999999654   4899988754 44444332 


Q ss_pred             HHh-cCCCCChhhHHHHhhccccH---HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEE
Q 021783          149 QNA-EGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  224 (307)
Q Consensus       149 ~~~-~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  224 (307)
                      ... ...+.++........+++.+   +...+++.++.+.+.+.|+.. +        +.-.          ...++++.
T Consensus       265 ~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g--------~~~~----------~~~~~~~~  325 (393)
T TIGR01822       265 RPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERMEAA-G--------FDIK----------PADHPIIP  325 (393)
T ss_pred             ccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-C--------CCCC----------CCCCCEEE
Confidence            111 12222332222233333222   223344455555566655532 1        1100          01244666


Q ss_pred             EEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHH
Q 021783          225 FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDK  300 (307)
Q Consensus       225 ~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~  300 (307)
                      +.+.+......+.+.|..+||.++ +..+..                   ......++|+|++.    +++++.++.|.+
T Consensus       326 i~~~~~~~~~~l~~~L~~~gI~v~-~~~~~~-------------------~~~~~~~iRis~~~~~t~edi~~~~~~l~~  385 (393)
T TIGR01822       326 VMLYDAVLAQRFARRLLEEGIYVT-GFFYPV-------------------VPKGQARIRVQISAAHTEEQLDRAVEAFTR  385 (393)
T ss_pred             EEeCCHHHHHHHHHHHHHCCeeEe-eeCCCC-------------------CCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence            766654457788888888899886 432110                   00123469999976    566666666666


Q ss_pred             HHhcC
Q 021783          301 ALRTG  305 (307)
Q Consensus       301 ~l~~~  305 (307)
                      +++++
T Consensus       386 ~~~~~  390 (393)
T TIGR01822       386 IGREL  390 (393)
T ss_pred             HHHHh
Confidence            65544

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.93  E-value=1.3e-24  Score=188.91  Aligned_cols=246  Identities=23%  Similarity=0.208  Sum_probs=165.9

Q ss_pred             CCC-CeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHH
Q 021783           12 GTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM   85 (307)
Q Consensus        12 ~~g-d~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~   85 (307)
                      ++| ++|+++..+|+++...+..+ +..|++++.++.+     |++++++.++++++++++++++||||.+.|+++|.++
T Consensus        85 ~~g~~~vi~~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l  163 (353)
T TIGR03235        85 QKGKKHIITSAIEHPAVLEPIRAL-ERNGFTVTYLPVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEV  163 (353)
T ss_pred             cCCCCeeeEcccccHHHHHHHHHH-HhcCCEEEEEccCCCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHHHH
Confidence            356 88999999999887776543 5679999999863     7899999998889999999999999999999999999


Q ss_pred             HHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHH-HHHH-H------HhcCCCC
Q 021783           86 AHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-LYFL-Q------NAEGSGL  156 (307)
Q Consensus        86 ~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~-~~~~-~------~~~~~~~  156 (307)
                      |+++|+++++|++|+.|..+ +...+++|++++|+||++ ||+|  .|+++++++..... .... .      .....+.
T Consensus       164 ~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~-gp~g--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  240 (353)
T TIGR03235       164 LEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKIY-GPKG--IGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTL  240 (353)
T ss_pred             HHHcCCEEEEEchhhcCCccccccccCCCEEEeehhhcC-CCCc--eEEEEEccCcccccccCceeeCCCCcCccccCCC
Confidence            99999999999999998876 666788999999999997 7888  89999987633211 1100 0      0011122


Q ss_pred             ChhhHHHHhhccccH----HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHH
Q 021783          157 APFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLAL  232 (307)
Q Consensus       157 ~~~~~~~~~~~l~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (307)
                      +.........+++.+    +.+.+++.+..+.+.+.++. .++              ++..++.....+++.|.+++.+ 
T Consensus       241 ~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~-~g~--------------~~~~~~~~~~~~i~~~~~~~~~-  304 (353)
T TIGR03235       241 PVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQT-LGV--------------KLNGDPAETIPHILNFSIDGVN-  304 (353)
T ss_pred             ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-CCe--------------EEeCCcccccCCEEEEEeCCcC-
Confidence            222222222233322    23333344444444444433 222              1111111123567888777654 


Q ss_pred             HHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCC----CeEEEEe
Q 021783          233 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTE----DLVRISV  286 (307)
Q Consensus       233 ~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~iRis~  286 (307)
                      ...+.+.|+. +|.++.|..++.-        ...++.++.+.|.++    +.+|+|+
T Consensus       305 ~~~v~~~L~~-~i~v~~g~~~~~~--------~~~~~~~l~~~g~~~~~~~~~~r~s~  353 (353)
T TIGR03235       305 SEALIVNLRA-DAAVSTGSACSSS--------KYEPSHVLQAMGLDTDRARGAIRFSW  353 (353)
T ss_pred             HHHHHHHHhC-CeEEEchhhcCCC--------CCCCCHHHHHcCCCHHHhCccEEEeC
Confidence            6778888865 8999988874311        112345677778764    8899885

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=3.4e-24  Score=187.23  Aligned_cols=246  Identities=19%  Similarity=0.216  Sum_probs=168.2

Q ss_pred             HHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            6 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         6 ~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      ++.+++++||+|+++.|+|+.+.    ..++..|++++.++.+     |++++++.++++++++++++|+||||.+++.+
T Consensus       104 ~~~~~~~~gd~vli~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~  179 (371)
T PRK05166        104 ICRAVLRPGDRVVTLYPSFPLHE----DYPTMMGARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTAD  179 (371)
T ss_pred             HHHHhcCCCCEEEEcCCChHHHH----HHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHH
Confidence            33456799999999999998776    5677889999999874     68999999888899999999999999999977


Q ss_pred             HHHHHHHH--cCCEEEEeCccCCCCc----CC----cc-CCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           81 KIAEMAHA--HGALLLVDNSIMSPVL----SR----PL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        81 ~l~~~~~~--~~~~li~D~a~~~~~~----~~----~~-~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                      ++.++++.  .++++|+|++|..-..    +.    .. ..+..++++||||.+ |.+|+|+||+++.++.+.+.+....
T Consensus       180 ~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~l~GlRiG~~i~~~~~l~~~~~~~~  258 (371)
T PRK05166        180 QLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAY-GLAGLRVGYGLVSDPELVGLLDRVR  258 (371)
T ss_pred             HHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhh-hcchhheeeeecCCHHHHHHHHHhc
Confidence            77776664  3789999999863221    11    11 123579999999999 7789999998886666666555443


Q ss_pred             HhcCCCCChhhHHHHhhccc---cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEE
Q 021783          150 NAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  226 (307)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  226 (307)
                      ..  ...+...+..+...+.   .++...+...++.+.+.+.|+.+. + .+ .                ...+.++++.
T Consensus       259 ~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~-~~-~----------------p~~g~fl~~~  317 (371)
T PRK05166        259 TP--FNVNGAAQAAALAALDDEEHLAKGVALALAERERLKKELAEMG-Y-RI-A----------------PSRANFLFFD  317 (371)
T ss_pred             cC--CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCc-C-ee-C----------------CCcCCEEEEe
Confidence            22  2234444434344332   233333444555556666666431 1 00 0                1135677777


Q ss_pred             eCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHH
Q 021783          227 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKAL  302 (307)
Q Consensus       227 ~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l  302 (307)
                      ++.  ...++.+.+..+||.+++|..+                      + .++++||+++. ++.+++++.|++.+
T Consensus       318 ~~~--~~~~l~~~l~~~gi~v~p~~~~----------------------~-~~~~iRi~~~~~~~~~~l~~~l~~i~  369 (371)
T PRK05166        318 ARR--PASAVAEALLRQGVIVKPWKQP----------------------G-FETFIRVSIGSPEENDHFVAALDKVL  369 (371)
T ss_pred             CCC--CHHHHHHHHHHCCeEEecCCCC----------------------C-CCCeEEEEcCCHHHHHHHHHHHHHHh
Confidence            642  2566777777789988876531                      1 25679999996 45777777777654

>PRK05839 hypothetical protein; Provisional

Probab=99.93  E-value=7.2e-24  Score=185.19  Aligned_cols=239  Identities=14%  Similarity=0.089  Sum_probs=151.0

Q ss_pred             CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHH
Q 021783           12 GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIA   83 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~---~~~l~   83 (307)
                      ++||.|+++.|+|+.+.    ..++..|++++.++.+     +++..+..+ ++++++++++||||||.+++   +++|+
T Consensus       107 ~~gd~vlv~~P~y~~~~----~~~~~~g~~v~~v~~~~~~~~~~d~~~~~~-~~~k~v~i~nP~NPTG~~~s~~~l~~i~  181 (374)
T PRK05839        107 KQNPTIAYPNPFYQIYE----GAAIASRAKVLLMPLTKENDFTPSLNEKEL-QEVDLVILNSPNNPTGRTLSLEELIEWV  181 (374)
T ss_pred             CCCCEEEECCCCchhhH----HHHHhcCCEEEEeecccccCCcCCcchhhh-ccccEEEEeCCCCCcCcccCHHHHHHHH
Confidence            58999999999998887    5567889999999874     122222222 46899999999999999997   77888


Q ss_pred             HHHHHcCCEEEEeCccCCCC----cCCc---------cCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHH
Q 021783           84 EMAHAHGALLLVDNSIMSPV----LSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  150 (307)
Q Consensus        84 ~~~~~~~~~li~D~a~~~~~----~~~~---------~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~  150 (307)
                      ++|+++|+++|+|++|+.-.    .+..         ...+..++++||||.+ +.+|+|+||++++++ +.+.+.....
T Consensus       182 ~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~ii~~~~-~~~~~~~~~~  259 (374)
T PRK05839        182 KLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRS-SAPGLRSGFIAGDAS-ILKKYKAYRT  259 (374)
T ss_pred             HHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEecccccc-CCccceeEEEecCHH-HHHHHHHHHh
Confidence            88999999999999987321    1111         1235789999999998 678999999998744 5455544443


Q ss_pred             hcCCCCChhhHHHHhhccc---cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEe
Q 021783          151 AEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  227 (307)
Q Consensus       151 ~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  227 (307)
                      ..+...+...+..+...+.   .++...+...++.+.+.+.+            +..          . ...+.++++++
T Consensus       260 ~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l------------~~~----------~-p~gg~fi~~~~  316 (374)
T PRK05839        260 YLGCASPLPLQKAAAVAWLDDEHAEFFRNIYAKNLKLAREIL------------GIT----------I-PPATFYVWLPV  316 (374)
T ss_pred             hcCCCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhc------------CCC----------C-CCeeEEEEEeC
Confidence            3332333333333333322   12222222223222222221            000          1 12467778887


Q ss_pred             CCHHHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHH
Q 021783          228 GSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKAL  302 (307)
Q Consensus       228 ~~~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l  302 (307)
                      ++   ..++.+++. .+||.+.+|..|..                   .+..++++|||++.  +++++.+++|.+.+
T Consensus       317 ~~---~~~~~~~l~~~~gi~v~pg~~f~~-------------------~~~~~~~iRis~~~~~~~~~~~l~~l~~~l  372 (374)
T PRK05839        317 DN---DEEFTKKLYQNEGIKVLPGSFLGR-------------------NGIGKGYVRIALVYDTPKLEKALEIIKTYL  372 (374)
T ss_pred             CC---hHHHHHHHHHHCCEEEeCchhhCC-------------------CCCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence            63   345666664 48999998875321                   12236789999985  34444555555544

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.93  E-value=2.4e-24  Score=187.49  Aligned_cols=250  Identities=15%  Similarity=0.135  Sum_probs=165.4

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----------ChHHHHhhcCCCceEEEEeCCCCC
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----------DLDEVASAIGPWTKLVWVESPTNP   72 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----------d~~~l~~~l~~~~~~v~~~~~~n~   72 (307)
                      ++..+...+.+||+|++++|+|+.+.    ..++..|++++.++.+          +++++++.. ++++++++++||||
T Consensus        86 ~i~~~~~~l~~g~~vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NP  160 (360)
T PRK07392         86 LLTWAGRELAQLRAVYLITPAFGDYR----RALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHNP  160 (360)
T ss_pred             HHHHHHHHhCCCCeEEEECCCcHHHH----HHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-cCCCEEEEeCCCCC
Confidence            34333333457899999999998888    6677899999999874          234444432 46899999999999


Q ss_pred             ccccccHHHHHHHHHHcCCEEEEeCccCCCCc----C----CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHH
Q 021783           73 RQQICDIRKIAEMAHAHGALLLVDNSIMSPVL----S----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  144 (307)
Q Consensus        73 tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~----~----~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~  144 (307)
                      ||.+++.++|.++++++++ +|+|++|.....    .    .....+..++++||||.+ +.+|+|+||++++++.+ +.
T Consensus       161 TG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~-~l~GlRiG~~v~~~~~~-~~  237 (360)
T PRK07392        161 TGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFY-SLPGLRLGYAIAHPDRL-QR  237 (360)
T ss_pred             CCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhh-cCCchheeeeeCCHHHH-HH
Confidence            9999999999999999985 666999863221    1    112335689999999999 77899999999975543 33


Q ss_pred             HHHHHHhcCCCCChhhHHHHhhccccH---HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCc
Q 021783          145 LYFLQNAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS  221 (307)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (307)
                      +....  .....+...+..+...++.-   ....+...++.+.+.+.|++.+++              .++    .+.+.
T Consensus       238 ~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~--------------~~~----~~~~~  297 (360)
T PRK07392        238 WQQWR--DPWPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLASLPGL--------------TPL----PSAAN  297 (360)
T ss_pred             HHhhC--CCCCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCc--------------EEC----CCCCC
Confidence            43322  12234555566655555431   111223344455555556543221              111    12356


Q ss_pred             eEEEEeCCHHHHHHHHhc-CCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHH
Q 021783          222 VLSFLTGSLALSKHVVET-TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLD  299 (307)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~-l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~  299 (307)
                      +++++++.  ...++.+. ++..||.+.+|..|..                     ..++++||+++. ++.+++.+.|.
T Consensus       298 fl~~~~~~--~~~~l~~~ll~~~gv~v~pg~~f~~---------------------~~~~~iRi~~~~~~~~~~l~~al~  354 (360)
T PRK07392        298 FLLVQSQG--SALQLQEKLLQQHRILIRDCLSFPE---------------------LGDRYFRVAVRTEAENQRLLEALA  354 (360)
T ss_pred             EEEEEcCC--CHHHHHHHHHhhCCEEEEeCCCCCC---------------------CCCCEEEEEeCCHHHHHHHHHHHH
Confidence            77777653  35666666 4667999998876321                     135789999987 44678888887


Q ss_pred             HHHh
Q 021783          300 KALR  303 (307)
Q Consensus       300 ~~l~  303 (307)
                      +.++
T Consensus       355 ~~~~  358 (360)
T PRK07392        355 AILA  358 (360)
T ss_pred             HHhh
Confidence            7664

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.93  E-value=7.2e-24  Score=184.83  Aligned_cols=234  Identities=21%  Similarity=0.237  Sum_probs=152.2

Q ss_pred             HHHHH-HHh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCcccccc--
Q 021783            3 ALAAV-THL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD--   78 (307)
Q Consensus         3 al~~~-~~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~--   78 (307)
                      ++..+ ..+ +++||+|++++|+|+.+.    ..++..|++++.++  ++++++.   ++++++++++|+||||.+++  
T Consensus        98 ~i~~~~~~l~~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~~~--~~~~l~~---~~~~~v~~~~p~NPtG~~~~~~  168 (364)
T PRK07865         98 LVAWLPTLLGLGPGDVVVIPELAYPTYE----VGARLAGATVVRAD--SLTELGP---QRPALIWLNSPSNPTGRVLGVD  168 (364)
T ss_pred             HHHHHHHHHcCCCCCEEEECCCCcccHH----HHHHhcCCEEEecC--ChhhCCc---ccceEEEEcCCCCCCCccCCHH
Confidence            44333 345 689999999999998887    55677899988875  3444432   67899999999999999986  


Q ss_pred             -HHHHHHHHHHcCCEEEEeCccCCCCcC----C---c----cCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH
Q 021783           79 -IRKIAEMAHAHGALLLVDNSIMSPVLS----R---P----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  146 (307)
Q Consensus        79 -~~~l~~~~~~~~~~li~D~a~~~~~~~----~---~----~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~  146 (307)
                       +++|.++|+++|+++|+|++|+.....    .   .    ...+..++++||||.+ +.+|+|+||++++++ +.+.+.
T Consensus       169 ~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlRiG~i~~~~~-~~~~~~  246 (364)
T PRK07865        169 HLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQS-NLAGYRAGFVAGDPA-LVAELL  246 (364)
T ss_pred             HHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhcc-CCCceeeEEEecCHH-HHHHHH
Confidence             678889999999999999999732211    0   1    1234679999999999 568999999988744 555555


Q ss_pred             HHHHhcCCCCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceE
Q 021783          147 FLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  223 (307)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  223 (307)
                      ......+...+...+..+...++.   +....+...++.+.+.+.|++..         +.      +.  .+. .+.++
T Consensus       247 ~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~------~~--~~~-~~~~~  308 (364)
T PRK07865        247 EVRKHAGMMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEAAG---------FR------VD--HSE-AGLYL  308 (364)
T ss_pred             HHHHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcC---------Cc------cc--CCC-ccEEE
Confidence            444433333444444444444432   22233344455555556565421         10      00  111 23355


Q ss_pred             EEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc
Q 021783          224 SFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  288 (307)
Q Consensus       224 ~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~  288 (307)
                      ++.++.  ....+.+.+.++||.+.+|..|..                     ..++++||+++.
T Consensus       309 ~~~~~~--~~~~~~~~l~~~gv~v~pg~~f~~---------------------~~~~~iRi~~~~  350 (364)
T PRK07865        309 WATRGE--DCWDTVAWLAERGILVAPGDFYGP---------------------AGAQHVRVALTA  350 (364)
T ss_pred             EEeCCC--CHHHHHHHHHHCCEEEeCccccCc---------------------CCCCEEEEEecC
Confidence            555532  245566777788999988775321                     024689999975

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.93  E-value=2.4e-24  Score=185.48  Aligned_cols=240  Identities=17%  Similarity=0.152  Sum_probs=159.5

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHHH
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKI   82 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l   82 (307)
                      ++.++..++++|| |++++|+|+.+.    ..++..|++++.++.++ +.    +...++++++++||||||.+++.+++
T Consensus        83 ~i~~l~~~~~~g~-v~v~~P~y~~y~----~~~~~~g~~~~~v~~~~-~~----~~~~~~~v~l~nPnNPTG~~~s~~~l  152 (339)
T PRK06959         83 AIRALPALLPRGR-VGIAPLAYSEYA----PAFARHGHRVVPLDEAA-DT----LPAALTHLIVVNPNNPTAERLPAARL  152 (339)
T ss_pred             HHHHHHHhcCCCe-EEEcCCCcHHHH----HHHHHCCCEEEeecccc-hh----ccccCCEEEEeCCCCCCCCCCCHHHH
Confidence            3444455678887 889999998888    66778899999988754 22    33456789999999999999986666


Q ss_pred             HHH---HHHcCCEEEEeCccCCCCc-C---CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCC
Q 021783           83 AEM---AHAHGALLLVDNSIMSPVL-S---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  155 (307)
Q Consensus        83 ~~~---~~~~~~~li~D~a~~~~~~-~---~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~  155 (307)
                      .++   |++++.++|+||+|..... +   .....+..++++||||.+ |.+|+|+||++++++ +.+.+......  ..
T Consensus       153 ~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~SfSK~~-gl~GlRiGy~v~~~~-li~~l~~~~~~--~~  228 (339)
T PRK06959        153 LRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSVGKFF-GLAGVRAGFVLAAPA-LLAALRDALGA--WT  228 (339)
T ss_pred             HHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecChhhc-CCcchheEEEecCHH-HHHHHHHhcCC--CC
Confidence            555   5678999999999975332 1   111234579999999999 778999999999754 54555444322  12


Q ss_pred             CChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHH
Q 021783          156 LAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLAL  232 (307)
Q Consensus       156 ~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (307)
                      .+...+..+...++.   .+...+.+.+..+.+.+.|++..         +.      +.     ..+.++++.++   .
T Consensus       229 vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~g---------~~------~~-----~~~~f~~~~~~---~  285 (339)
T PRK06959        229 VSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAHG---------FA------VH-----ATPLFSWTDDP---R  285 (339)
T ss_pred             CcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCC---------CC------cc-----CcceEEEEeCC---C
Confidence            334445555555432   22233444555566666666431         10      00     02345566654   2


Q ss_pred             HHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec-c-CChHHHHHHHHHHHhcC
Q 021783          233 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-I-EDVNDLISDLDKALRTG  305 (307)
Q Consensus       233 ~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~-~-~~~~~~i~~l~~~l~~~  305 (307)
                      ..++.+.|..+||.++...                          ..+++|||++ . ++.+++++.|++.++.+
T Consensus       286 ~~~l~~~l~~~GI~vr~~~--------------------------~~~~lRisi~~~~~e~~~l~~al~~~~~~~  334 (339)
T PRK06959        286 AAALHAALARRGIWTRYFA--------------------------PPPSVRFGLPADEAEWQRLEDALAECVPTL  334 (339)
T ss_pred             HHHHHHHHHhCCeEEEECC--------------------------CCCeEEEECCCCHHHHHHHHHHHHHHHHHH
Confidence            5678888888999886311                          1346999994 4 77889999888877543

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.93  E-value=1.2e-23  Score=183.46  Aligned_cols=251  Identities=17%  Similarity=0.158  Sum_probs=171.8

Q ss_pred             HHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCC----CceEEEEeCCCCCccccccH
Q 021783            4 LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP----WTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         4 l~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~----~~~~v~~~~~~n~tG~~~~~   79 (307)
                      +.++.+++++||+|++++|.|+++.    ..++..|++++.++..|++++++.++.    +++++++++++|++|...++
T Consensus        90 ~~~l~~~~~~gd~v~~~~~~~~~~~----~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~  165 (360)
T TIGR00858        90 VGVISALVGKGDLILSDALNHASLI----DGCRLSGARVRRYRHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPL  165 (360)
T ss_pred             HHHHHHhCCCCCEEEEEccccHHHH----HHHHhcCCceEEecCCCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcCH
Confidence            3455667899999999999998887    445678999999988899999988863    57888989999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcC-C---------ccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH-
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLS-R---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-  148 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~-~---------~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~-  148 (307)
                      ++|.++|+++|+++|+|++|+.+.+. .         ....+.+++++|+||+++ ++   +|+++++++ +.+.+... 
T Consensus       166 ~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~-~~---gG~~~~~~~-~~~~~~~~~  240 (360)
T TIGR00858       166 PQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALG-SY---GAYVAGSQA-LIDYLINRA  240 (360)
T ss_pred             HHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhh-cc---CcEEEcCHH-HHHHHHHhC
Confidence            99999999999999999999865432 1         112368999999999994 44   488888755 33333222 


Q ss_pred             HHhc-CCCCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEE
Q 021783          149 QNAE-GSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  224 (307)
Q Consensus       149 ~~~~-~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  224 (307)
                      .... ....++........+++.   .....++..++.+.+.+.|++.. +        .-.          ...+++++
T Consensus       241 ~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~--------~~~----------~~~~~~~~  301 (360)
T TIGR00858       241 RTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEALG-F--------TLM----------PSCTPIVP  301 (360)
T ss_pred             ccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcC-C--------ccC----------CCCCCEEE
Confidence            2221 222333333333333332   22344556666677777776532 1        000          11366888


Q ss_pred             EEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHH
Q 021783          225 FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  302 (307)
Q Consensus       225 ~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l  302 (307)
                      +.++......++.+.|.++||.++.+..+..                    ...++++|+|++....++.++.+.+.|
T Consensus       302 ~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~--------------------~~~~~~iRis~~~~~~~~~i~~~l~~l  359 (360)
T TIGR00858       302 VIIGDNASALALAEELQQQGIFVGAIRPPTV--------------------PAGTSRLRLTLSAAHTPGDIDRLAEAL  359 (360)
T ss_pred             EEeCCHHHHHHHHHHHHHCCeeEeeeCCCCC--------------------CCCCceEEEEEcCCCCHHHHHHHHHhh
Confidence            8886544477888888888998876443110                    012457999999866677777666655

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=1.5e-24  Score=188.60  Aligned_cols=244  Identities=18%  Similarity=0.213  Sum_probs=156.9

Q ss_pred             HHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcccccc
Q 021783            6 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         6 ~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~   78 (307)
                      ++.++++|||+|++++|+|+.+.    ..+...|++++.++.+       +.+++.+.. ++++++++++|+||||.+++
T Consensus        98 ~~~~~~~~gd~V~v~~P~y~~~~----~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG~~~s  172 (357)
T PRK14809         98 LARAMLDPGDTVLVPDPGFAYYG----MSARYHHGEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTGSEIP  172 (357)
T ss_pred             HHHHhcCCCCEEEEeCCChHHHH----HHHHHcCCeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCCcCCC
Confidence            44557899999999999997555    3455678888777652       345555554 46899999999999999999


Q ss_pred             HHHHHHHHHHc--CCEEEEeCccCCCCcC-----CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHh
Q 021783           79 IRKIAEMAHAH--GALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  151 (307)
Q Consensus        79 ~~~l~~~~~~~--~~~li~D~a~~~~~~~-----~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~  151 (307)
                      .+++.++++..  ++++|+|++|..-...     .....+..++++||||.+ +.+|+|+||++++++ +.+.+..... 
T Consensus       173 ~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~~~~~~~-~~~~~~~~~~-  249 (357)
T PRK14809        173 LDEVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAY-GLAGLRLGYAVVPEE-WADAYARVNT-  249 (357)
T ss_pred             HHHHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHh-cCcchhheeeecCHH-HHHHHHHhCC-
Confidence            87777777654  7899999999732211     112235689999999999 678999999999865 4344433321 


Q ss_pred             cCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHH
Q 021783          152 EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA  231 (307)
Q Consensus       152 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (307)
                       ....+...+..+...+.. ....++..+..+..++.+.+.          +...    .+    ...+.++++++.+  
T Consensus       250 -~~~~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~r~~l~~~----------L~~~----~~----~~~g~f~~~~~~~--  307 (357)
T PRK14809        250 -PFAASELACRAGLAALDD-DEHVERTVETARWAREYIREE----------LDAP----TW----ESAGNFVLAEVGD--  307 (357)
T ss_pred             -CCCCCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHH----------hcCc----cC----CCCCCEEEEECCC--
Confidence             223444555555555533 112222222222222222211          1000    00    1246777887752  


Q ss_pred             HHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHh
Q 021783          232 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALR  303 (307)
Q Consensus       232 ~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~  303 (307)
                       ..++.+.+.++||.+..|..|.                       .++++||+++. +++++.++.|.++++
T Consensus       308 -~~~~~~~l~~~gv~v~~g~~f~-----------------------~~~~iRls~~~~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        308 -ASAVAEAAQERGVIVRDCTSFG-----------------------LPECIRITCGTREETERAVEVLNEVLA  356 (357)
T ss_pred             -HHHHHHHHHHCCEEEEECccCC-----------------------CCCeEEEecCCHHHHHHHHHHHHHHhc
Confidence             4567777778899999887632                       13579999974 677777777777664

>PRK14012 cysteine desulfurase; Provisional

Probab=99.93  E-value=4.9e-24  Score=188.28  Aligned_cols=126  Identities=22%  Similarity=0.262  Sum_probs=110.4

Q ss_pred             cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHH
Q 021783           11 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM   85 (307)
Q Consensus        11 ~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~   85 (307)
                      .++||+|++++++|+++...+..+ +..|++++.++.+     |+++++++++++++++++++++|+||.+.|+++|.++
T Consensus        91 ~~~gd~Vi~~~~~~~s~~~~~~~~-~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~l  169 (404)
T PRK14012         91 QKKGKHIITSKTEHKAVLDTCRQL-EREGFEVTYLDPQSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEI  169 (404)
T ss_pred             cCCCCEEEEecCccHHHHHHHHHH-HhCCCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECcCCCccchhhHHHHHHH
Confidence            478999999999998887666543 4569999998764     8899999999999999999999999999999999999


Q ss_pred             HHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChh
Q 021783           86 AHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  140 (307)
Q Consensus        86 ~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~  140 (307)
                      |+++|+++|+|++|+.|..+ +....++|++++|+||.+ ||.|  .|+++++++.
T Consensus       170 a~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~-gp~g--~G~l~~~~~~  222 (404)
T PRK14012        170 CRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIY-GPKG--IGALYVRRKP  222 (404)
T ss_pred             HHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhhcc-CCCc--eEEEEEecCC
Confidence            99999999999999998876 666778999999999977 6766  7888887654

>PLN02231 alanine transaminase

Probab=99.93  E-value=2.7e-24  Score=193.89  Aligned_cols=259  Identities=15%  Similarity=0.124  Sum_probs=162.7

Q ss_pred             HHH-HHHHhc-CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCC------CceEEEEe
Q 021783            3 ALA-AVTHLL-GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGP------WTKLVWVE   67 (307)
Q Consensus         3 al~-~~~~~~-~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~------~~~~v~~~   67 (307)
                      |+. ++..++ .+||+|+++.|.|+.+.    ..++..|++++.++++       |+++|++.++.      ++++++++
T Consensus       203 ai~~~~~~l~~~~gd~Vli~~P~Y~~y~----~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~  278 (534)
T PLN02231        203 AVHMMMQLLIRSEKDGILCPIPQYPLYS----ASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVI  278 (534)
T ss_pred             HHHHHHHHhccCCCCEEEEeCCCChhHH----HHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEe
Confidence            453 334456 47999999999999888    6667889999998763       68899888753      68999999


Q ss_pred             CCCCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCcC------Ccc----------CCCccEEEeccccccccCCC
Q 021783           68 SPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS------RPL----------ELGADIVMHSATKFIAGHSD  128 (307)
Q Consensus        68 ~~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~------~~~----------~~~~d~~~~s~~K~~~g~~g  128 (307)
                      +|+||||.+++   +++|+++|++||++||+|++|..-.+.      ...          .....+++.|+||.+.|.+|
T Consensus       279 nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pG  358 (534)
T PLN02231        279 NPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECG  358 (534)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCc
Confidence            99999999996   889999999999999999999743221      110          01136889999997767789


Q ss_pred             ceeEEEEEc--ChhHHHHHHHHHHhcCCCCChhhHHHHhhccc-------cHHH-------HHHHHHHHHHHHHHHHhcC
Q 021783          129 VMAGVLAVK--GERLAKELYFLQNAEGSGLAPFDCWICLRGVK-------TMAL-------RVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       129 ~~~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~-------~~~~~~~~~~~l~~~l~~~  192 (307)
                      +|+||+.+.  ++.+.+.+........ ..+...+.++...++       .+..       ..+.+.++.+.+.+.|+..
T Consensus       359 lRiGy~~~~~~~~~l~~~l~k~~~~~~-~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~  437 (534)
T PLN02231        359 KRGGYMEVTGFTSDVREQIYKVASVNL-CSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSL  437 (534)
T ss_pred             cceEEEEEecCCHHHHHHHHHHHhhhc-CCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999873  4556555544443222 122233333333331       1211       1233444555555555543


Q ss_pred             CCccEEecCCCCCCCchHHHhhhccCCCceEEE-Ee--CCH--HH--------HHHHHh-cCCcceeecCCCCccceeec
Q 021783          193 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LT--GSL--AL--------SKHVVE-TTKYFSITVSFGSVKSLISM  258 (307)
Q Consensus       193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~--~~~--~~--------~~~~~~-~l~~~gi~v~~g~~~~~~~~  258 (307)
                      +              ++...  .+  .|+++.| ++  +..  +.        ...+.. .+...||.+.+|..|...  
T Consensus       438 ~--------------gi~~~--~p--~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~--  497 (534)
T PLN02231        438 E--------------GVTCN--KA--EGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQV--  497 (534)
T ss_pred             C--------------Cceec--CC--CeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCC--
Confidence            2              21111  11  3455554 33  211  10        112223 345679999999875310  


Q ss_pred             ccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 021783          259 PCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  304 (307)
Q Consensus       259 p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  304 (307)
                                        .+..++|+++..  +.+++.+++|.+++++
T Consensus       498 ------------------~g~~~~Rit~~~~~e~l~eal~RL~~~~~~  527 (534)
T PLN02231        498 ------------------PGTWHFRCTILPQEDKIPAIVSRLTEFHKS  527 (534)
T ss_pred             ------------------CCCCeEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence                              124569999964  5666667777776643

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.93  E-value=1.3e-23  Score=182.52  Aligned_cols=254  Identities=18%  Similarity=0.156  Sum_probs=168.0

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcC-----CCceEEEEeCCCCCccccccH
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-----PWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~-----~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      +++.+++++||+|++++|.|+++.    ..++..|++++.++..|++++++.++     ++++++++++++||||...|+
T Consensus        76 ~~~~~~~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~  151 (349)
T cd06454          76 GVLSTLAGKGDLIISDSLNHASII----DGIRLSGAKKRIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPL  151 (349)
T ss_pred             HHHHHhcCCCCEEEEehhhhHHHH----HHHHHcCCceEEecCCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCH
Confidence            456667899999999999998877    44566899999888888888888886     357888888999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcC---------CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH-
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLS---------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-  149 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~---------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~-  149 (307)
                      ++|.++|+++|+++|+|++|+.+...         .....+.|++++|+||+++ ++   +|+++.+++.. +.+.... 
T Consensus       152 ~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~---gG~i~~~~~~~-~~~~~~~~  226 (349)
T cd06454         152 PELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFG-AV---GGYIAGSKELI-DYLRSYAR  226 (349)
T ss_pred             HHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhc-cc---CCEEECCHHHH-HHHHHhch
Confidence            99999999999999999999865432         1234578999999999995 44   58888775533 3333222 


Q ss_pred             Hh-cCCCCChhhHHHHhhccccH---HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEE
Q 021783          150 NA-EGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  225 (307)
Q Consensus       150 ~~-~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  225 (307)
                      .. .+..........+...++..   ....+++.++.+.+.+.+.+..         +...      .   ...+.++++
T Consensus       227 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~g---------~~~~------~---~~~~~~~~~  288 (349)
T cd06454         227 GFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKELG---------FPVG------G---SPSHIIPPL  288 (349)
T ss_pred             hhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC---------Cccc------C---CCCCcEEEE
Confidence            12 12233333333333444332   3344555666666666665431         1000      0   112333444


Q ss_pred             EeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          226 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       226 ~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      .+.+.....++.+.|..+||.++.+....                    .....+++|++++....++.++.+.+.|+++
T Consensus       289 ~~~~~~~~~~~~~~L~~~gI~~~~~~~~~--------------------~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         289 IGDDPAKAVAFSDALLERGIYVQAIRYPT--------------------VPRGTARLRISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             eCCChHHHHHHHHHHHhCCceEEEecCCc--------------------cCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence            44433346788888887899877543200                    0012467999998766677777777776654

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.92  E-value=2.7e-24  Score=187.90  Aligned_cols=260  Identities=18%  Similarity=0.177  Sum_probs=173.4

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcC--CCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG--PWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~--~~~~~v~~~~~~n~tG   74 (307)
                      ++ .++.+++.+||+|+++++.+++..  +...++..|++++.++.+     |++++++.++  ++++++++++++||||
T Consensus        68 ~l~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG  145 (368)
T PRK13479         68 SVEAAIGSLVPRDGKVLVPDNGAYGAR--IAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVHCETTTG  145 (368)
T ss_pred             HHHHHHHhccCCCCeEEEEeCCchHHH--HHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCccc
Confidence            44 455667889999999887765553  235677889999999873     6899999886  4567899999999999


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHH---
Q 021783           75 QICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN---  150 (307)
Q Consensus        75 ~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~---  150 (307)
                      ...|+++|.++|+++|+++++|++|+.+..+ +...++.|++++|+||+++|++|  .|+++++++.+.. +.....   
T Consensus       146 ~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~~~d~~v~s~~K~l~g~~G--~G~l~~~~~~~~~-~~~~~~~~~  222 (368)
T PRK13479        146 ILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPIDIAELGIDALISSANKCIEGVPG--FGFVIARRSELEA-CKGNSRSLS  222 (368)
T ss_pred             cccCHHHHHHHHHHcCCEEEEEcccccCCccccccccCceEEEecCccccccCCC--ceEEEECHHHHHH-hhcCCCCee
Confidence            9999999999999999999999998887655 56667899999999999988888  7999998664433 221100   


Q ss_pred             --------------hcCCCCChhhHHHHhhcccc------HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchH
Q 021783          151 --------------AEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE  210 (307)
Q Consensus       151 --------------~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~  210 (307)
                                    ....+.+....+....+++.      ++.+.+++.+..+.+.+.+++.. +        .      
T Consensus       223 ~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~--------~------  287 (368)
T PRK13479        223 LDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRALG-F--------E------  287 (368)
T ss_pred             ecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcC-C--------c------
Confidence                          00011221121222222221      23334555556666666665441 1        0      


Q ss_pred             HHhhhccCCCceEEEEeCCH--HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEe-c
Q 021783          211 LHYSQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV-G  287 (307)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~-~  287 (307)
                      ++.++....+.++.|.+...  .+...+.+.|..+||.++.|..+                        ..+++|+|. +
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~g~~~------------------------~~~~iRis~~~  343 (368)
T PRK13479        288 PLLDAEIQSPIIVTFHAPADPAYDFKEFYERLKEQGFVIYPGKLT------------------------QVDTFRIGCIG  343 (368)
T ss_pred             ccCCchhcCceEEEEECCCCCCcCHHHHHHHHHHCCEEEecCCCC------------------------CCCEEEEecCC
Confidence            10000001123455555322  23678888898899998766431                        134699986 5


Q ss_pred             ---cCChHHHHHHHHHHHhcCC
Q 021783          288 ---IEDVNDLISDLDKALRTGP  306 (307)
Q Consensus       288 ---~~~~~~~i~~l~~~l~~~~  306 (307)
                         .++++++++.|.+.+++++
T Consensus       344 ~~t~edi~~~l~~L~~~l~~~~  365 (368)
T PRK13479        344 DVDAADIRRLVAAIAEALYWMG  365 (368)
T ss_pred             CCCHHHHHHHHHHHHHHHHHcC
Confidence               2788888888888887654

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.92  E-value=2.2e-23  Score=184.13  Aligned_cols=255  Identities=15%  Similarity=0.132  Sum_probs=168.9

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcC----C--CceEEEEeCCCCCcccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----P--WTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~----~--~~~~v~~~~~~n~tG~~~~   78 (307)
                      .++.++++|||+|++++|.|+++.    ..++..|++++.++..|++++++.++    +  ++++|++.+++|++|...+
T Consensus       117 ~~~~~l~~~gd~vi~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~  192 (397)
T PRK06939        117 GLFETLLGKEDAIISDALNHASII----DGVRLCKAKRYRYANNDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAP  192 (397)
T ss_pred             HHHHHhCCCCCEEEEEhhhhHHHH----HHHHhcCCceEEeCCCCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCC
Confidence            556668899999999999998887    44566788888888889998888775    2  7788888889999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcCC---------ccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~~---------~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                      +++|.++|++||+++|+|++|+.+....         ....+.|++++|+||+++|+   ++||++++++ +.+.+....
T Consensus       193 ~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~---r~G~v~~~~~-~~~~l~~~~  268 (397)
T PRK06939        193 LPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGA---SGGYTAGRKE-VIDWLRQRS  268 (397)
T ss_pred             HHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCcc---CceEEEeCHH-HHHHHHHhC
Confidence            9999999999999999999997554321         11125789999999999543   4899998855 444343321


Q ss_pred             H-h-cCCCCChhhHHHHhhccccH---HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEE
Q 021783          150 N-A-EGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  224 (307)
Q Consensus       150 ~-~-~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  224 (307)
                      . . .+....+..+..+..+++.+   ....++..++.+.+.+.|+...         ++..          ...++++.
T Consensus       269 ~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~~---------~~~~----------~~~~~~~~  329 (397)
T PRK06939        269 RPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAAG---------FTLG----------PGEHPIIP  329 (397)
T ss_pred             ccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC---------CCcC----------CCCCCEEE
Confidence            1 1 12222222233333333222   2334455555566666665431         1101          11245565


Q ss_pred             EEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHH
Q 021783          225 FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDK  300 (307)
Q Consensus       225 ~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~  300 (307)
                      +.+.+.....++.+.|..+||.+..+. +..                   .+.+.+++|++++.    +++++.++.|.+
T Consensus       330 ~~~~~~~~~~~~~~~L~~~gI~v~~~~-~~~-------------------~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~  389 (397)
T PRK06939        330 VMLGDAKLAQEFADRLLEEGVYVIGFS-FPV-------------------VPKGQARIRTQMSAAHTKEQLDRAIDAFEK  389 (397)
T ss_pred             EEECCHHHHHHHHHHHHHCCceEeeeC-CCC-------------------CCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence            566544446788888888899877422 110                   01124579999865    778888888888


Q ss_pred             HHhcCC
Q 021783          301 ALRTGP  306 (307)
Q Consensus       301 ~l~~~~  306 (307)
                      ++++.+
T Consensus       390 ~~~~~~  395 (397)
T PRK06939        390 VGKELG  395 (397)
T ss_pred             HHHHhC
Confidence            887765

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.92  E-value=2e-23  Score=181.40  Aligned_cols=227  Identities=19%  Similarity=0.216  Sum_probs=148.7

Q ss_pred             Hh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHH
Q 021783            9 HL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAE   84 (307)
Q Consensus         9 ~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~---~~~l~~   84 (307)
                      .+ +++||+|++++|+|+.+.    ..++..|++++.++  +++++.   .++++++++++|+||||.+++   +++|.+
T Consensus        99 ~l~~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~v~--~~~~l~---~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~  169 (357)
T TIGR03539        99 LLGLGPGDTVVIPELAYPTYE----VGALLAGATPVAAD--DPTELD---PVGPDLIWLNSPGNPTGRVLSVDELRAIVA  169 (357)
T ss_pred             HHcCCCCCEEEECCCCcHHHH----HHHHhcCCEEeccC--ChhhcC---ccCccEEEEeCCCCCcCccCCHHHHHHHHH
Confidence            34 689999999999998777    44567899988775  444332   357899999999999999996   778999


Q ss_pred             HHHHcCCEEEEeCccCCCC-----cC--Cc----cCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcC
Q 021783           85 MAHAHGALLLVDNSIMSPV-----LS--RP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  153 (307)
Q Consensus        85 ~~~~~~~~li~D~a~~~~~-----~~--~~----~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~  153 (307)
                      +|+++|+++|+|++|..-.     ..  .+    ...+..++++||||.+ +.+|+|+||++++++ +.+.+.......+
T Consensus       170 ~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~~G~R~G~~i~~~~-~~~~~~~~~~~~~  247 (357)
T TIGR03539       170 WARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRS-NLAGYRAGFVAGDPA-LVAELLTVRKHAG  247 (357)
T ss_pred             HHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEecccccc-CCCceeEEEEecCHH-HHHHHHHHHhhcc
Confidence            9999999999999996311     11  11    1224579999999999 568999999997744 5455554444333


Q ss_pred             CCCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCc-eEEEEeCC
Q 021783          154 SGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGS  229 (307)
Q Consensus       154 ~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~  229 (307)
                      ...+...+..+...++.   +....+.+.++.+.+.+.+++..         +.-.        .+  .++ ++++.++.
T Consensus       248 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~g---------~~~~--------~p--~~~~~~~~~~~~  308 (357)
T TIGR03539       248 LMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEKAG---------FRID--------HS--EAGLYLWATRGE  308 (357)
T ss_pred             cCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcC---------CCCc--------CC--CccEEEEEECCC
Confidence            33444445544455532   22223333444455555555321         1100        11  244 44444432


Q ss_pred             HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc
Q 021783          230 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  288 (307)
Q Consensus       230 ~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~  288 (307)
                        ....+.+.+.+.||.+.+|..|..                     ..++++|||++.
T Consensus       309 --~~~~~~~~l~~~gV~v~pg~~f~~---------------------~~~~~iRis~~~  344 (357)
T TIGR03539       309 --DAWDTVDRLAELGILVAPGDFYGP---------------------AGSQHVRVALTA  344 (357)
T ss_pred             --CHHHHHHHHHhCCEEECCccccCC---------------------CCCCeEEEEecC
Confidence              356677778888999988775321                     025689999986

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK07179 hypothetical protein; Provisional

Probab=99.92  E-value=2.7e-23  Score=183.70  Aligned_cols=253  Identities=17%  Similarity=0.159  Sum_probs=170.5

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCC-CceEEEEeCCCCCccccccHHHHH
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIA   83 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~~~~l~   83 (307)
                      .++.++.++||.|+++.++|.+..    ..++..|++++.++.+|++++++.+++ ++++|++++++||+|.+.|+++|.
T Consensus       129 ~~l~~l~~~g~~v~~~~~~h~s~~----~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~  204 (407)
T PRK07179        129 GLLQTIADPNTPVYIDFFAHMSLW----EGVRAAGAQAHPFRHNDVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIV  204 (407)
T ss_pred             HHHHHhCCCCCEEEEECCcCHHHH----HHHHHCCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCccccHHHHH
Confidence            566678889999999999998776    445567889888888899999999975 588999999999999999999999


Q ss_pred             HHHHHcCCEEEEeCccCCCCcC-C----ccC----CCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHH--hc
Q 021783           84 EMAHAHGALLLVDNSIMSPVLS-R----PLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AE  152 (307)
Q Consensus        84 ~~~~~~~~~li~D~a~~~~~~~-~----~~~----~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~--~~  152 (307)
                      ++|+++|+++|+|++|+.|... .    ...    .++|++++|+||++++ +   +|+++++++ +.+.+.....  ..
T Consensus       205 ~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~-~---~G~l~~~~~-~~~~~~~~~~~~~~  279 (407)
T PRK07179        205 DIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAG-R---AGIITCPRE-LAEYVPFVSYPAIF  279 (407)
T ss_pred             HHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhhc-c---CeEEEeCHH-HHHHHHHhCcCeee
Confidence            9999999999999999865431 1    111    2469999999999953 2   899998754 4343332221  12


Q ss_pred             CCCCChhhHHHHhhccc---cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC
Q 021783          153 GSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  229 (307)
Q Consensus       153 ~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (307)
                      +++..+.........++   ....+.+++.++.+.+.+.|++.. +     ..              .+.++++++.+++
T Consensus       280 ~~t~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L~~~g-~-----~v--------------~~~~~i~~l~~~~  339 (407)
T PRK07179        280 SSTLLPHEIAGLEATLEVIESADDRRARLHANARFLREGLSELG-Y-----NI--------------RSESQIIALETGS  339 (407)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC-C-----CC--------------CCCCCEEEEEeCC
Confidence            22333322222222232   223345566666677777776431 1     00              1135678888765


Q ss_pred             HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          230 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       230 ~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                      ......+.+.|.++||.++.      .+.|..              ...++++|||++.    ++++++++.|.+++++.
T Consensus       340 ~~~~~~~~~~L~~~GI~~~~------~~~p~~--------------~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~  399 (407)
T PRK07179        340 ERNTEVLRDALEERNVFGAV------FCAPAT--------------PKNRNLIRLSLNADLTASDLDRVLEVCREARDEV  399 (407)
T ss_pred             HHHHHHHHHHHHHCCceEee------ecCCCC--------------CCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence            44567788888888886431      122211              1124679999986    66666677776666654


Q ss_pred             C
Q 021783          306 P  306 (307)
Q Consensus       306 ~  306 (307)
                      +
T Consensus       400 ~  400 (407)
T PRK07179        400 D  400 (407)
T ss_pred             C
Confidence            4

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.92  E-value=2.5e-23  Score=177.64  Aligned_cols=257  Identities=21%  Similarity=0.201  Sum_probs=190.8

Q ss_pred             CcHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCC------CceEEEEeCCCCCcc
Q 021783            1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP------WTKLVWVESPTNPRQ   74 (307)
Q Consensus         1 ~aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG   74 (307)
                      +|+++++.++++++|.|+.....|.+..    ..++..+++++.+.++|+++|++.+.+      +.++|+++++.++.|
T Consensus       110 ~AN~~~i~~l~~~~dli~~D~lnHASii----dG~rls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdG  185 (388)
T COG0156         110 VANLGLLSALLKKGDLIFSDELNHASII----DGIRLSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDG  185 (388)
T ss_pred             hhHHHHHHHhcCCCcEEEEechhhhhHH----HHHHhCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEEeccccCCC
Confidence            4677888899999999999999998877    778899999999999999999999974      357888889999999


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCccCCCCcC-Ccc---------CCCccEEEeccccccccCCCceeEEEEEcChhHHHH
Q 021783           75 QICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPL---------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  144 (307)
Q Consensus        75 ~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~---------~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~  144 (307)
                      .+.|+++|.+++++|++++++|++|+.|.+. ...         ...+|++++|++|.+++ .   +|++.++.. +.+.
T Consensus       186 diApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs-~---Gg~v~g~~~-~~d~  260 (388)
T COG0156         186 DIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGS-S---GGYIAGSAA-LIDY  260 (388)
T ss_pred             CcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcc-c---CceeeCcHH-HHHH
Confidence            9999999999999999999999999987654 111         12358999999999953 3   788888855 5444


Q ss_pred             HHHH-HHh-cCCCCChhhHHHHhhccccH---HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCC
Q 021783          145 LYFL-QNA-EGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  219 (307)
Q Consensus       145 ~~~~-~~~-~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (307)
                      +... ... ....+++..+.....+++.+   ..+.+++.++...+.+.++...         +...          ...
T Consensus       261 L~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~~---------~~~~----------~s~  321 (388)
T COG0156         261 LRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKALG---------LVLL----------PSE  321 (388)
T ss_pred             HHHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC---------CccC----------CCC
Confidence            4443 332 23456666655555555443   3445555555555554333221         1101          224


Q ss_pred             CceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHH
Q 021783          220 GSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD  299 (307)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~  299 (307)
                      .+++.+.+.+...+..+.+.|...||.+..      ..+|..+.              +...+|++++..+.++.++.+.
T Consensus       322 s~I~pv~~gd~~~a~~~s~~l~~~Gi~v~~------i~~PTVp~--------------gtarlRi~lta~ht~~~I~~l~  381 (388)
T COG0156         322 SPIIPVILGDEERALEASRALLEEGIYVSA------IRPPTVPK--------------GTARLRITLTAAHTEEDIDRLA  381 (388)
T ss_pred             CCeeeeEeCCHHHHHHHHHHHHHCCeeEee------ecCCCCCC--------------CcceEEEEecCCCCHHHHHHHH
Confidence            678888998877788888888888998876      33443332              2345999999999999999999


Q ss_pred             HHHhcC
Q 021783          300 KALRTG  305 (307)
Q Consensus       300 ~~l~~~  305 (307)
                      +++.++
T Consensus       382 ~~l~~~  387 (388)
T COG0156         382 EALSEV  387 (388)
T ss_pred             HHHHhh
Confidence            988764

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=3.4e-24  Score=187.14  Aligned_cols=245  Identities=14%  Similarity=0.153  Sum_probs=164.5

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcC-CCceEEEEeCCCCCccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG-PWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~-~~~~~v~~~~~~n~tG~   75 (307)
                      ++ .++.++++|||+|+++.|+|+.+.    ..++..|.+++.++.+     |++++++++. .+++++++++|+||||.
T Consensus       100 ~l~~~~~~~~~~gd~v~v~~P~y~~~~----~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~  175 (368)
T PRK03317        100 ILQQLLQAFGGPGRTALGFVPSYSMHP----IIARGTHTEWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGT  175 (368)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCChHHHH----HHHHhcCCeeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCC
Confidence            44 344457899999999999998877    5567788988888742     7899999886 57899999999999999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCccCCCCc---CC----ccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH
Q 021783           76 ICDIRKIAEMAHAHGALLLVDNSIMSPVL---SR----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  148 (307)
Q Consensus        76 ~~~~~~l~~~~~~~~~~li~D~a~~~~~~---~~----~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~  148 (307)
                      +++.+++.++++.+++++|+||+|+....   ..    ....+..++++||||.+ |.+|+|+||++++++ +.+.+...
T Consensus       176 ~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-g~~GlRiG~~~~~~~-~~~~l~~~  253 (368)
T PRK03317        176 ALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAF-AFAGGRLGYLAAAPA-VVDALRLV  253 (368)
T ss_pred             CCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhh-ccchhhhhhhhCCHH-HHHHHHhc
Confidence            99999999999999999999999973211   11    11224568999999999 567899999998754 44444433


Q ss_pred             HHhcCCCCChhhHHHHhhccccH---HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEE
Q 021783          149 QNAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  225 (307)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  225 (307)
                      ..  ....+...+..+...++..   ....+++.++.+.+.+.+++.. +        .      ..    ...++++.|
T Consensus       254 ~~--~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~--------~------~~----~~~~~~~~~  312 (368)
T PRK03317        254 RL--PYHLSAVTQAAARAALRHADELLASVAALRAERDRVVAWLRELG-L--------R------VA----PSDANFVLF  312 (368)
T ss_pred             CC--CCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCC-C--------E------eC----CCCCcEEEE
Confidence            21  2234445555555555432   2223333444444445454321 1        0      00    112445544


Q ss_pred             -EeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHh
Q 021783          226 -LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALR  303 (307)
Q Consensus       226 -~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~  303 (307)
                       .+.   ....+.+.+.++||.++...                          .++++||+++. ++++++++.|.+.++
T Consensus       313 ~~~~---~~~~~~~~l~~~Gv~v~~~~--------------------------~~~~iRi~~~~~~~~~~~~~~l~~~~~  363 (368)
T PRK03317        313 GRFA---DRHAVWQGLLDRGVLIRDVG--------------------------IPGWLRVTIGTPEENDAFLAALAEVLA  363 (368)
T ss_pred             eccC---CHHHHHHHHHHCCEEEEeCC--------------------------CCCeEEEecCCHHHHHHHHHHHHHHHH
Confidence             333   25667777777899876421                          14579999985 567777777777664

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.92  E-value=5.5e-24  Score=185.58  Aligned_cols=257  Identities=18%  Similarity=0.190  Sum_probs=167.8

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcC--CCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG--PWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~--~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++.+||++++..+.+++..  +...++..|++++.++.+     |+++++++++  ++++++.+++++||||
T Consensus        66 al~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG  143 (363)
T TIGR02326        66 AVEAVIGSAVPKDGKLLVVINGAYGAR--IVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAADPAITHIALVHCETTTG  143 (363)
T ss_pred             HHHHHHHhcCCCCCeEEEEeCChhhHH--HHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCcc
Confidence            45 455567788888776555443332  235567889999988874     7899999887  3567888999999999


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH------
Q 021783           75 QICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF------  147 (307)
Q Consensus        75 ~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~------  147 (307)
                      ...|+++|.++|+++|+++++|++|+.|..+ +...+++|++++|+|||++||+|  .|+++++++.+.+....      
T Consensus       144 ~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~G--~G~l~~~~~~~~~~~~~~~~~~~  221 (363)
T TIGR02326       144 ILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKCIQGVPG--FGFVIARQAELAACKGNARSLSL  221 (363)
T ss_pred             ccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhcCccEEEecCccccccCCc--ceEEEECHHHHHHhhcCCCceee
Confidence            9999999999999999999999999988766 67778999999999999988888  79999987654432110      


Q ss_pred             --------HHHhcC---CCCChhhHHHHhhcccc------HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchH
Q 021783          148 --------LQNAEG---SGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE  210 (307)
Q Consensus       148 --------~~~~~~---~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~  210 (307)
                              .....+   .+.+.........+++.      ++.+.+++.+....+.+.++... + ....+         
T Consensus       222 ~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~~---------  290 (363)
T TIGR02326       222 DLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRALG-F-EPLLD---------  290 (363)
T ss_pred             cHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcC-C-eeccC---------
Confidence                    000000   11222222222223322      23344555566666666665441 1 01000         


Q ss_pred             HHhhhccCCCceEEEEeCCH--HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEe-c
Q 021783          211 LHYSQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV-G  287 (307)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~-~  287 (307)
                          +....+.+.+|.+++.  .....+.+.|+++||.++.|..+                        .++++|||+ +
T Consensus       291 ----~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g~~~------------------------~~~~iRi~~~~  342 (363)
T TIGR02326       291 ----DEIQSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPGKVS------------------------QVDCFRIGNIG  342 (363)
T ss_pred             ----cccCCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECCcCC------------------------CCCEEEEecCC
Confidence                0011233456766542  23667888888889998876531                        134699996 4


Q ss_pred             c---CChHHHHHHHHHHH
Q 021783          288 I---EDVNDLISDLDKAL  302 (307)
Q Consensus       288 ~---~~~~~~i~~l~~~l  302 (307)
                      .   ++++++++.|.+++
T Consensus       343 ~~~~edv~~~l~~l~~~l  360 (363)
T TIGR02326       343 EVDAADITRLLTAIGKAM  360 (363)
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            2   66666666666654

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.92  E-value=8e-24  Score=184.73  Aligned_cols=245  Identities=21%  Similarity=0.227  Sum_probs=166.2

Q ss_pred             HHHHHHH-h-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-------CChHHHHhhcCC------CceEEEEe
Q 021783            3 ALAAVTH-L-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGP------WTKLVWVE   67 (307)
Q Consensus         3 al~~~~~-~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~------~~~~v~~~   67 (307)
                      ++.++.. + .++||+|++++|+|+.+.    ..++..|++++.++.       .|++++++.+++      ++++++++
T Consensus        80 ~~~~~~~~~~~~~~~~vlv~~P~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~  155 (363)
T PF00155_consen   80 ALFLLLRLLKINPGDTVLVPDPCYPSYI----EAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLIC  155 (363)
T ss_dssp             HHHHHHHHHHSSTTSEEEEEESSSTHHH----HHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEE
T ss_pred             chhhhhhcccccccccceecCCcccccc----ccccccCceeeeccccccccccccccccccccccccccccccceeeec
Confidence            3434444 4 569999999999999888    667788999999993       489999998875      67899999


Q ss_pred             CCCCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCcCCc---------cCCCccEEEeccccccccCCCceeEEEE
Q 021783           68 SPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLA  135 (307)
Q Consensus        68 ~~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~~---------~~~~~d~~~~s~~K~~~g~~g~~~G~~~  135 (307)
                      +|+||||..++   +++|+++|++||+++|+|++|+.......         ......+++.|+||.+ |.+|+|+|+++
T Consensus       156 ~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRvG~i~  234 (363)
T PF00155_consen  156 NPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSF-GLPGLRVGYIV  234 (363)
T ss_dssp             SSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTT-TSGGGTEEEEE
T ss_pred             ccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeeccccc-ccccccccccc
Confidence            99999999987   55566669999999999999985444311         1222369999999999 67899999999


Q ss_pred             EcChhHHHHHHHHHHhcCCCCChhhHHHHhhccc-------cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCc
Q 021783          136 VKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK-------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG  208 (307)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~  208 (307)
                      ++ +.+.+.+.........  +...+..+...+.       .++...+.+.++.+.+.+.|++. ++ .+..        
T Consensus       235 ~~-~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~-~~~~--------  301 (363)
T PF00155_consen  235 AP-PELIERLRRFQRSGLS--SSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-GI-TVLP--------  301 (363)
T ss_dssp             EE-HHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TS-EEEH--------
T ss_pred             ch-hhhhhhhhhccccccc--cchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-hh-heee--------
Confidence            95 5566666655554433  3333333322221       34455666667777777777654 11 1110        


Q ss_pred             hHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcc-eeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec
Q 021783          209 HELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG  287 (307)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~  287 (307)
                              ...+.+++..++.. +..++.++|.++ ||.+.+|..+.                      . ++++|++++
T Consensus       302 --------~~~~~~~~~~~~~~-~~~~l~~~L~~~~gi~v~pg~~~~----------------------~-~~~iRi~~a  349 (363)
T PF00155_consen  302 --------PEAGFFLWVRLDPN-DAEELAQELLEEYGILVRPGSYFG----------------------V-PGYIRISLA  349 (363)
T ss_dssp             --------HSBSSEEEEEESHH-HHHHHHHHHHHHHTEEEEEGGGGT----------------------S-TTEEEEEGG
T ss_pred             --------ccCccEEEEEcccc-hHHHHHHHHHHhCCEEEEecCCCC----------------------C-CCEEEEEec
Confidence                    11233444445544 477888888777 99998877632                      2 567999993


Q ss_pred             c---CChHHHHHH
Q 021783          288 I---EDVNDLISD  297 (307)
Q Consensus       288 ~---~~~~~~i~~  297 (307)
                      .   +++++.+++
T Consensus       350 ~~~~e~~~~~~~~  362 (363)
T PF00155_consen  350 SHSEEDLEEALER  362 (363)
T ss_dssp             CSCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhh
Confidence            3   444444443

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=2.2e-24  Score=185.77  Aligned_cols=231  Identities=18%  Similarity=0.176  Sum_probs=157.5

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHH
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH   87 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~~   87 (307)
                      +||+|+++.|+|+.+.    ..++..|++++.++.+     |++++++.+ ++++++++++|+||||.+++.++|.++++
T Consensus        93 ~gd~V~v~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~~l~~i~~  167 (337)
T PRK03967         93 EGKHIVITPPTFGMYS----FYAKLNGIPVIDVPLKEDFTIDGERIAEKA-KNASAVFICSPNNPTGNLQPEEEILKVLE  167 (337)
T ss_pred             CCCeEEEeCCChHHHH----HHHHHcCCeEEEeecCCCCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHHHHHHHHh
Confidence            7999999999997655    5567789999998864     567887765 57889999999999999999999999995


Q ss_pred             HcCCEEEEeCccCCCCc----CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHH
Q 021783           88 AHGALLLVDNSIMSPVL----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  163 (307)
Q Consensus        88 ~~~~~li~D~a~~~~~~----~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (307)
                       +++++|+|++|.....    ......+..++++||||.+ +.+|+|+||++++++ +.+.+......  ...+...+.+
T Consensus       168 -~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~~-~l~GlRiG~iv~~~~-~i~~~~~~~~~--~~~~~~~q~~  242 (337)
T PRK03967        168 -TGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFSKAF-GLAGIRAGYAIANEE-IIDALYRIKPP--FSLNILTMKI  242 (337)
T ss_pred             -cCCEEEEECchhhhcccchHHHHhhCCCEEEEecchHhh-cchhhhheeeecCHH-HHHHHHhhcCC--CCCCHHHHHH
Confidence             7999999999973211    1112234689999999999 778999999999754 44444443322  2334455555


Q ss_pred             Hhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcC
Q 021783          164 CLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT  240 (307)
Q Consensus       164 ~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  240 (307)
                      +...++.   +....+...++.+.+.+.|...         .   .          ...+.+++++++       +.+.|
T Consensus       243 ~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~---------~---~----------~~~~~~~~~~~~-------~~~~l  293 (337)
T PRK03967        243 VRLALDHYDLIEERIDYIIKERERVRRELGEY---------A---Y----------PSDANFLLLKLD-------AYDYL  293 (337)
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHHhccC---------c---C----------CCCCcEEEEhHH-------HHHHH
Confidence            5544432   2223333344444444444321         0   0          123556666542       44556


Q ss_pred             CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHhcCC
Q 021783          241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALRTGP  306 (307)
Q Consensus       241 ~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~~~~  306 (307)
                      ..+||.++.+..                        ..++++||+++. ++.+++++.|.++++.++
T Consensus       294 ~~~gi~v~~~~~------------------------~~~~~~Ri~~~~~~~~~~l~~~l~~~~~~~~  336 (337)
T PRK03967        294 LENGIVVRKLSG------------------------RLEGHIRVTVGKREENDEFIKALKEIKEGYG  336 (337)
T ss_pred             HHCCEEEEeCCC------------------------CCCCeEEEecCCHHHHHHHHHHHHHHHHhcC
Confidence            567888864321                        125679999987 788999999998887764

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.92  E-value=7.6e-23  Score=177.55  Aligned_cols=257  Identities=21%  Similarity=0.215  Sum_probs=177.9

Q ss_pred             cHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----Ch--HHHHhhcCCCceEEEEeCCCCCc
Q 021783            2 AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DL--DEVASAIGPWTKLVWVESPTNPR   73 (307)
Q Consensus         2 aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~--~~l~~~l~~~~~~v~~~~~~n~t   73 (307)
                      +++ .++.++.++||+|++++++|.++.    ..++..|.+++.++.+     +.  +.++....+++++|++++++|||
T Consensus        70 ~a~~~~~~~~~~~g~~vl~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~t  145 (350)
T cd00609          70 EALSLLLRALLNPGDEVLVPDPTYPGYE----AAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPT  145 (350)
T ss_pred             HHHHHHHHHhCCCCCEEEEcCCCchhHH----HHHHHCCCEEEEEecccccCCccCHHHHHhhcCccceEEEEECCCCCC
Confidence            344 444557789999999999999888    5667788999999875     22  56666667899999999999999


Q ss_pred             cccccHH---HHHHHHHHcCCEEEEeCccCCCCcC--------CccCCCccEEEeccccccccCCCceeEEEEEcChhHH
Q 021783           74 QQICDIR---KIAEMAHAHGALLLVDNSIMSPVLS--------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  142 (307)
Q Consensus        74 G~~~~~~---~l~~~~~~~~~~li~D~a~~~~~~~--------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~  142 (307)
                      |...|.+   +|.++|+++|+++|+|++|+.+...        .....+.|++++|++|++ +.+|.+.|+++++++.+.
T Consensus       146 G~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~-~~~g~~~G~i~~~~~~~~  224 (350)
T cd00609         146 GAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTF-GLPGLRIGYLIAPPEELL  224 (350)
T ss_pred             CcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeeccccc-CCcccceEEEecCHHHHH
Confidence            9999755   5558999999999999999754321        234557899999999999 455677999999875666


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          143 KELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      +.+...........+...+......++.    +....+.+.++++.+.+.+++......                 ....
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-----------------~~~~  287 (350)
T cd00609         225 ERLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELGPLVV-----------------VKPS  287 (350)
T ss_pred             HHHHHHHHhcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-----------------cCCC
Confidence            6666655554444444444444444433    344445556667777777765532100                 0112


Q ss_pred             CCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHH
Q 021783          219 AGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL  298 (307)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l  298 (307)
                      .+.++++.+.+......+.+.+.+.||.+..+..+..                     ..++++|++++..  ++.++.+
T Consensus       288 ~g~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~---------------------~~~~~iRi~~~~~--~~~i~~~  344 (350)
T cd00609         288 GGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGE---------------------GGEGFVRLSFATP--EEELEEA  344 (350)
T ss_pred             ccEEEEEecCCCChHHHHHHHHHhCCEEEeccccccc---------------------CCCCeEEEEeeCC--HHHHHHH
Confidence            4567777776544466777778888998887654221                     1356799999986  6666666


Q ss_pred             HHHHh
Q 021783          299 DKALR  303 (307)
Q Consensus       299 ~~~l~  303 (307)
                      .++|+
T Consensus       345 ~~al~  349 (350)
T cd00609         345 LERLA  349 (350)
T ss_pred             HHHhh
Confidence            66554

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PLN02483 serine palmitoyltransferase

Probab=99.92  E-value=3.1e-23  Score=185.91  Aligned_cols=255  Identities=17%  Similarity=0.179  Sum_probs=169.0

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcC-------CCc-----e-EEEEeCCCC
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-------PWT-----K-LVWVESPTN   71 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~-------~~~-----~-~v~~~~~~n   71 (307)
                      .++.++++|||+|++++++|++..    ..++..|++++.++.+|++++++.++       +++     + +|++++..|
T Consensus       176 ~~i~al~~~Gd~Vi~d~~~h~s~~----~~~~~~Ga~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s  251 (489)
T PLN02483        176 TIIPALIGKGGLIISDSLNHNSIV----NGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYS  251 (489)
T ss_pred             HHHHHhCCCCCEEEEcchhhHHHH----HHHHHcCCeEEEEeCCCHHHHHHHHHhhhhccccccccCCceEEEEECCCCC
Confidence            456678999999999999999887    55778999999999988888876653       222     4 555667889


Q ss_pred             CccccccHHHHHHHHHHcCCEEEEeCccCCCCcC----------CccCCCccEEEeccccccccCCCceeEEEEEcChhH
Q 021783           72 PRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS----------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        72 ~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~----------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~  141 (307)
                      ++|.+.++++|.++|++||+++|+|++|+.+...          .....++|++++|+||++ |+.   +|+++++++ +
T Consensus       252 ~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~-g~~---GG~i~~~~~-l  326 (489)
T PLN02483        252 MEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSF-GSC---GGYIAGSKE-L  326 (489)
T ss_pred             CCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhc-ccC---ceEEEcCHH-H
Confidence            9999999999999999999999999999854321          112246899999999999 444   599988755 4


Q ss_pred             HHHHHHHHHh--cCCCCChhhHHHHhhccc---------cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchH
Q 021783          142 AKELYFLQNA--EGSGLAPFDCWICLRGVK---------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE  210 (307)
Q Consensus       142 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~  210 (307)
                      .+.+......  .+...++.....+.++++         ....+.+++.++.+.+.+.|++.. + .+  .+        
T Consensus       327 i~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~G-~-~v--~~--------  394 (489)
T PLN02483        327 IQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKMG-F-EV--LG--------  394 (489)
T ss_pred             HHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHCC-C-cc--cC--------
Confidence            4444433221  122223222222333332         223445667777777888887541 1 00  00        


Q ss_pred             HHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--
Q 021783          211 LHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--  288 (307)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--  288 (307)
                            ...++++++.+........+.+.|.++||.+.....      |..              ....+++|++++.  
T Consensus       395 ------~~~sp~~~l~l~~~~~~~~~~~~Ll~~GI~v~~~~f------p~~--------------p~~~~~vRi~isa~~  448 (489)
T PLN02483        395 ------DNDSPVMPIMLYNPAKIPAFSRECLKQNVAVVVVGF------PAT--------------PLLLARARICISASH  448 (489)
T ss_pred             ------CCCCCEEEEEECCHHHHHHHHHHHHHCCcEEeeeCC------CCC--------------CCCCceEEEEeCCCC
Confidence                  112456666665444467788888778988774221      100              1123569999976  


Q ss_pred             --CChHHHHHHHHHHHhcCC
Q 021783          289 --EDVNDLISDLDKALRTGP  306 (307)
Q Consensus       289 --~~~~~~i~~l~~~l~~~~  306 (307)
                        +++++.++.|.+.++.+.
T Consensus       449 t~edId~~l~~L~~~~~~~~  468 (489)
T PLN02483        449 SREDLIKALEVISEVGDLVG  468 (489)
T ss_pred             CHHHHHHHHHHHHHHHHHhC
Confidence              677777777777765543

>PLN02721 threonine aldolase

Probab=99.92  E-value=3.2e-23  Score=180.25  Aligned_cols=253  Identities=20%  Similarity=0.205  Sum_probs=162.1

Q ss_pred             HHHHHHhcC-CCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcC-------CCceEEEEeC-C
Q 021783            4 LAAVTHLLG-TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG-------PWTKLVWVES-P   69 (307)
Q Consensus         4 l~~~~~~~~-~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~-------~~~~~v~~~~-~   69 (307)
                      +.++.++++ +||+|++++++|.+..... ..+...|++++.++.+     |++++++.++       +++++|++++ +
T Consensus        69 ~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~  147 (353)
T PLN02721         69 LISVLVHCDVRGSEVILGDNSHIHLYENG-GISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTH  147 (353)
T ss_pred             HHHHHHHccCCCCeEEEcCccceehhccc-chhhhcCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccc
Confidence            445555666 9999999999986655210 1456789999988853     7899999987       6899999986 5


Q ss_pred             CCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCc---C-Ccc--CCCccEEEeccccccccCCCceeEEEEEcChh
Q 021783           70 TNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL---S-RPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGER  140 (307)
Q Consensus        70 ~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~---~-~~~--~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~  140 (307)
                      +||+|.++|   +++|.++|+++|+++|+|++|..+..   . ...  ..++|.++.|+||+++++.   +|+++.+ +.
T Consensus       148 ~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~---G~~~~~~-~~  223 (353)
T PLN02721        148 ANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPV---GSVIVGS-KS  223 (353)
T ss_pred             cccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCce---eeEEecC-HH
Confidence            778999886   78999999999999999999864421   1 111  2368899999999996542   3445555 44


Q ss_pred             HHHHHHHHHHhcCCCCC--hhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          141 LAKELYFLQNAEGSGLA--PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       141 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      +.+.+.......+....  ...+.....+++....++++..++.+.+.+.|++.+.+. ..            ..   ..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~------------~~---~~  287 (353)
T PLN02721        224 FIRKAKRLRKTLGGGMRQVGVLAAAALVALQENVPKLEDDHKKAKLLAEGLNQIKGLR-VN------------VA---AV  287 (353)
T ss_pred             HHHhHHHHHHhcCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcE-Ee------------cC---Cc
Confidence            54444444332222211  112222233343333334444555666677666543220 00            00   11


Q ss_pred             CCceEEEEeCCH--HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChH
Q 021783          219 AGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVN  292 (307)
Q Consensus       219 ~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~  292 (307)
                      .++++++.++..  .....+.+.|..+||.++.+.                           ++++|++++.    ++++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~---------------------------~~~lR~~~~~~~~~~~i~  340 (353)
T PLN02721        288 ETNIVYFDITDGSRITAEKLCKSLEEHGVLLMPGN---------------------------SSRIRVVTHHQISDSDVQ  340 (353)
T ss_pred             cceEEEEEccCCccccHHHHHHHHHhCCcEEecCC---------------------------CceEEEEecCcCCHHHHH
Confidence            256777877542  236788888888899887653                           3459999974    6666


Q ss_pred             HHHHHHHHHHhc
Q 021783          293 DLISDLDKALRT  304 (307)
Q Consensus       293 ~~i~~l~~~l~~  304 (307)
                      ++++.|++++..
T Consensus       341 ~~~~~l~~~~~~  352 (353)
T PLN02721        341 YTLSCFQQAALT  352 (353)
T ss_pred             HHHHHHHHHhhc
Confidence            667776666543

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.92  E-value=8.2e-23  Score=179.78  Aligned_cols=252  Identities=17%  Similarity=0.132  Sum_probs=167.6

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCC---CceEEEEeCCCCCccccccHHH
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP---WTKLVWVESPTNPRQQICDIRK   81 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~---~~~~v~~~~~~n~tG~~~~~~~   81 (307)
                      .++..++++||+|+++++.|+++.    ..+...|++++.++..|++++++.+++   +++++++++++|++|...++++
T Consensus       114 ~~l~~~~~~gd~V~~~~~~~~~~~----~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~  189 (385)
T PRK05958        114 AVLTALAGKGDLIVSDKLNHASLI----DGARLSRARVRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAE  189 (385)
T ss_pred             HHHHHhCCCCCEEEEeCccCHHHH----HHHHhcCCceEEeCCCCHHHHHHHHHhccCCCeEEEEEecccCCCCcCCHHH
Confidence            445567899999999999998887    445667999999998899999998864   4667777789999999999999


Q ss_pred             HHHHHHHcCCEEEEeCccCCCCcC----------CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH-H
Q 021783           82 IAEMAHAHGALLLVDNSIMSPVLS----------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-N  150 (307)
Q Consensus        82 l~~~~~~~~~~li~D~a~~~~~~~----------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~-~  150 (307)
                      |.++|++||+++|+|++|+.+.+.          .....+.++++.|+||++ +++   +|+++.+++ +.+.+.... .
T Consensus       190 i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~~~---Gg~~~~~~~-~~~~~~~~~~~  264 (385)
T PRK05958        190 LVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKAL-GSS---GAAVLGSET-LIDYLINRARP  264 (385)
T ss_pred             HHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhc-ccC---CcEEEcCHH-HHHHHHHhCcc
Confidence            999999999999999999765432          111224568999999999 455   478777644 444333221 1


Q ss_pred             h-cCCCCChhhHHHHhhccccH---HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEE
Q 021783          151 A-EGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  226 (307)
Q Consensus       151 ~-~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  226 (307)
                      . .+...++.....+..+++.+   ....+...++.+.+.+.++...         ++-.          ...+++++|.
T Consensus       265 ~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~---------~~~~----------~~~~~~~~~~  325 (385)
T PRK05958        265 FIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRALG---------FQLM----------DSQSAIQPLI  325 (385)
T ss_pred             ceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC---------CCcC----------CCCCCEEEEE
Confidence            1 11223334444444444322   2334455556666666666431         1101          1246788888


Q ss_pred             eCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 021783          227 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  304 (307)
Q Consensus       227 ~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  304 (307)
                      +++.....++.+.|.++||.++.+..+.                    ...+++++|||++....++.++.+.+.|++
T Consensus       326 ~~~~~~~~~~~~~l~~~gI~v~~~~~~~--------------------~~~~~~~lRis~~~~~~~~~i~~~l~~l~~  383 (385)
T PRK05958        326 VGDNERALALAAALQEQGFWVGAIRPPT--------------------VPAGTSRLRITLTAAHTEADIDRLLEALAE  383 (385)
T ss_pred             eCCHHHHHHHHHHHHHCCceEecccCCC--------------------CCCCCceEEEEecCCCCHHHHHHHHHHHHh
Confidence            8765457788888888899887633210                    001246799999865555555555555543

>TIGR01814 kynureninase kynureninase

Probab=99.92  E-value=8.2e-24  Score=186.89  Aligned_cols=129  Identities=16%  Similarity=0.242  Sum_probs=105.8

Q ss_pred             HHHhcCCC---CeEEEcCCCCcchHHHHhhhcccCCcEE----EEecCC-----ChHHHHhhc---CCCceEEEEeCCCC
Q 021783            7 VTHLLGTG---EEIVAGDDLYGGTDRLLSRVTPKTGVVV----KRVNTC-----DLDEVASAI---GPWTKLVWVESPTN   71 (307)
Q Consensus         7 ~~~~~~~g---d~Vlv~~~~~~~~~~~~~~~~~~~g~~~----~~v~~~-----d~~~l~~~l---~~~~~~v~~~~~~n   71 (307)
                      +.+++++|   ++|++++.+|++....|...++..|+++    +.++.+     |++++++.+   +++|++|++++++|
T Consensus       103 ~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~  182 (406)
T TIGR01814       103 LASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIEKNGDDIAVILLSGVQY  182 (406)
T ss_pred             HHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHHhcCCCeEEEEEecccc
Confidence            34455554   3688989999998877766677788887    455432     678887776   47899999999999


Q ss_pred             CccccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEc
Q 021783           72 PRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVK  137 (307)
Q Consensus        72 ~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~  137 (307)
                      +||.+.|+++|.++|+++|+++++|++|+.|..+ +..++|+|++++|+|||++|++|  +|+.+.+
T Consensus       183 ~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s~hK~l~g~pG--~~l~v~~  247 (406)
T TIGR01814       183 YTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYKYLNAGPG--AGAFVHE  247 (406)
T ss_pred             ccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEcCccccCCCCC--eEEEEeh
Confidence            9999999999999999999999999999999987 77788999999999999976766  5544444

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK07908 hypothetical protein; Provisional

Probab=99.92  E-value=3.1e-23  Score=179.84  Aligned_cols=245  Identities=17%  Similarity=0.170  Sum_probs=161.7

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccc
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~   77 (307)
                      ++.++.. +++| .+++..|+|..+.    ..++..|++++.++.+     |++    .+.++++++++++|+||||.++
T Consensus        87 al~~~~~-l~~~-~viv~~P~y~~~~----~~~~~~G~~i~~v~~~~~~~~d~~----~l~~~~~~i~l~np~NPTG~~~  156 (349)
T PRK07908         87 GFALLAR-LRPR-RAAVVHPSFTEPE----AALRAAGIPVHRVVLDPPFRLDPA----AVPDDADLVVIGNPTNPTSVLH  156 (349)
T ss_pred             HHHHHHh-cCCC-eEEEeCCCChHHH----HHHHHcCCEEEeeccCcccCcChh----HhccCCCEEEEcCCCCCCCCCc
Confidence            3433444 6775 5677889997776    5567789999999875     233    3456789999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCccCC---CCcCCc--cCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhc
Q 021783           78 DIRKIAEMAHAHGALLLVDNSIMS---PVLSRP--LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE  152 (307)
Q Consensus        78 ~~~~l~~~~~~~~~~li~D~a~~~---~~~~~~--~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~  152 (307)
                      +.++|.++|++ +.++|+|++|+.   +.....  ...+..++++||||.+ +.+|+|+||++++++ +.+.+...... 
T Consensus       157 ~~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~-~l~GlRiG~~~~~~~-~~~~~~~~~~~-  232 (349)
T PRK07908        157 PAEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKTW-SLAGLRVGYALGAPD-VLARLTRGRAH-  232 (349)
T ss_pred             CHHHHHHHHhc-CCEEEEECcchhhccCCccccccccCCCEEEEeeccccc-CCccceeeeeecCHH-HHHHHHhcCCC-
Confidence            99999999975 788999999863   211111  1234678999999999 778999999998755 43434332221 


Q ss_pred             CCCCChhhHHHHhhcc-----ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEe
Q 021783          153 GSGLAPFDCWICLRGV-----KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  227 (307)
Q Consensus       153 ~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  227 (307)
                       ...+..........+     +.++...+.+.++.+.+.+.|++. ++ .+..                ...+.++++++
T Consensus       233 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~-~~~~----------------p~~g~~~~~~~  293 (349)
T PRK07908        233 -WPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV-GA-RVVD----------------PAAAPFVLVRV  293 (349)
T ss_pred             -CCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC-Cc-Eecc----------------CCCceEEEEEC
Confidence             122222222222222     223333444455555566666543 11 1110                12477888888


Q ss_pred             CCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHhc
Q 021783          228 GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALRT  304 (307)
Q Consensus       228 ~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~~  304 (307)
                      ++   ...+.+.++++||.++.|..|.                     +..++++|||++. ++++++++.|++.+..
T Consensus       294 ~~---~~~~~~~l~~~gI~v~~g~~f~---------------------~~~~~~vRis~~~~~~~~~l~~al~~~~~~  347 (349)
T PRK07908        294 PD---AELLRKRLRERGIAVRRGDTFP---------------------GLDPDYLRLAVRPRAEVPVLVQALAEILKA  347 (349)
T ss_pred             Cc---HHHHHHHHHhCCEEEEECCCCC---------------------CCCCCeEEEEeCCCccHHHHHHHHHHHHhc
Confidence            74   4567777888899998887632                     1135789999986 7999999999888754

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=1.1e-23  Score=181.19  Aligned_cols=228  Identities=12%  Similarity=0.146  Sum_probs=152.9

Q ss_pred             CeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHH-HhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEE
Q 021783           15 EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEV-ASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALL   93 (307)
Q Consensus        15 d~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l-~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~~~~~l   93 (307)
                      |+|++++|+|+.+.    ..++..|++++.++.++--.+ +..+ .+++++++++|+||||.+++.+++.+++ +++++|
T Consensus        97 d~v~v~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~~-~~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~i  170 (335)
T PRK14808         97 DRSVFFPPTYSCYR----IFAKAVGAKFLEVPLTKDLRIPEVNV-GEGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFV  170 (335)
T ss_pred             CcEEECCCCHHHHH----HHHHHcCCeEEEecCCCcCCCChhHc-cCCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEE
Confidence            78999999998888    778889999999987521001 1112 3578999999999999999999999998 579999


Q ss_pred             EEeCccCCCC---c-CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccc
Q 021783           94 LVDNSIMSPV---L-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  169 (307)
Q Consensus        94 i~D~a~~~~~---~-~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  169 (307)
                      |+|++|....   . +........++++||||.+ +.+|+|+||++++++ +.+.+......  ...+...+.++...++
T Consensus       171 i~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~-~l~GlRvG~~v~~~~-~~~~l~~~~~~--~~~~~~~q~a~~~~l~  246 (335)
T PRK14808        171 ALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAF-SLAAQRIGYVVSSEK-FIDAYNRVRLP--FNVSYVSQMFAKVALD  246 (335)
T ss_pred             EEECchhhhcCCchHHHHHhCCCEEEEEechhhc-cCcccceEEEEeCHH-HHHHHHHhcCC--CCCCHHHHHHHHHHHh
Confidence            9999996321   1 1122345789999999999 678999999999865 44444443321  2233344444444443


Q ss_pred             c---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceee
Q 021783          170 T---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSIT  246 (307)
Q Consensus       170 ~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~  246 (307)
                      .   +....+...++.+.+.+.|+... +        .      +.    ...++++++.++..+ ...+.+.+..+||.
T Consensus       247 ~~~~~~~~~~~~~~~r~~l~~~L~~~g-~--------~------~~----~~~g~f~~~~l~~~~-~~~~~~~l~~~Gi~  306 (335)
T PRK14808        247 HREIFEERTKFIVEERERMKSALREMG-Y--------R------IT----DSRGNFVFIFMEKEE-KERLLEHLRAKNIA  306 (335)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCC-C--------E------EC----CCCCeEEEEeCCCcc-HHHHHHHHHHCCeE
Confidence            2   22233344444455555555431 1        0      00    114678888886543 57788888889998


Q ss_pred             cCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHH
Q 021783          247 VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDK  300 (307)
Q Consensus       247 v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~  300 (307)
                      ++.  .                          ++++|||++. ++.+++++.|.+
T Consensus       307 V~~--~--------------------------~~~~Risi~~~~~~~~~~~~l~~  333 (335)
T PRK14808        307 VRS--F--------------------------REGVRITIGKREENDMILKELEV  333 (335)
T ss_pred             EEE--C--------------------------CCCeEEecCCHHHHHHHHHHHHh
Confidence            873  1                          1349999986 677777777654

>PLN02672 methionine S-methyltransferase

Probab=99.91  E-value=7.4e-23  Score=193.21  Aligned_cols=253  Identities=14%  Similarity=0.111  Sum_probs=166.1

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCC-CceEEEEeCCC-CCccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGP-WTKLVWVESPT-NPRQQ   75 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~-~~~~v~~~~~~-n~tG~   75 (307)
                      .++.++++|||+|+++.|+|+.+.    ..++..|++++.+|++       |++++++++.+ +.+++++++|+ ||||.
T Consensus       769 lll~aLl~pGD~VLVp~PtY~~Y~----~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~  844 (1082)
T PLN02672        769 KLVLCCVQEGGTLCFPAGSNGTYV----SAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGL  844 (1082)
T ss_pred             HHHHHHcCCCCEEEEeCCChHHHH----HHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCc
Confidence            355678899999999999999888    6678889999999873       56889999865 45688999997 99999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-C------c-------cC---CCccEEEeccccccccCCCceeEEEE
Q 021783           76 ICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-R------P-------LE---LGADIVMHSATKFIAGHSDVMAGVLA  135 (307)
Q Consensus        76 ~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-~------~-------~~---~~~d~~~~s~~K~~~g~~g~~~G~~~  135 (307)
                      +++   +++|+++|++||++||+|++|+.-.+. .      .       ..   .+..++++|+||.+ +.+|+|+||++
T Consensus       845 v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf-~lpGLRIGylI  923 (1082)
T PLN02672        845 LYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTEL-LSGGHEFGFLA  923 (1082)
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhh-ccHHHHheeEE
Confidence            986   788899999999999999999721111 0      0       00   12578999999999 67899999999


Q ss_pred             EcChhHHHHHHHHHHhcCCC-CChhhHHHHhhcc--------ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCC
Q 021783          136 VKGERLAKELYFLQNAEGSG-LAPFDCWICLRGV--------KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH  206 (307)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l--------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~  206 (307)
                      ++++.+.+.+.......... .....+......+        +.+....+.+.++.+.+.+.|+... + .+.       
T Consensus       924 ap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~G-i-~v~-------  994 (1082)
T PLN02672        924 LNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEACG-W-DVL-------  994 (1082)
T ss_pred             eCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C-eEe-------
Confidence            98775666555443222221 1122222222111        1223334445666666777776541 1 111       


Q ss_pred             CchHHHhhhccCCCceEEEEeCC-----------------HHHHHHHHhcCCc-ceeecCCCCccceeecccccCCCCCc
Q 021783          207 PGHELHYSQAKGAGSVLSFLTGS-----------------LALSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHASIP  268 (307)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~p~~~~~~~~~  268 (307)
                              ++ ..+.++|+.+..                 ......+.+.+.. .||.+.+|..|               
T Consensus       995 --------~P-eGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~F--------------- 1050 (1082)
T PLN02672        995 --------EP-QGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWT--------------- 1050 (1082)
T ss_pred             --------cC-CcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCccc---------------
Confidence                    11 123344443310                 0125667776654 49999888642               


Q ss_pred             HHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHh
Q 021783          269 VEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALR  303 (307)
Q Consensus       269 ~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~  303 (307)
                             | .++++||+++.  +++++.++.|+++++
T Consensus      1051 -------G-~~g~~RIsfa~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672       1051 -------G-IPGYCRFSFALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred             -------C-CCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence                   1 25689999986  467777777777654

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.91  E-value=5.7e-23  Score=182.88  Aligned_cols=127  Identities=20%  Similarity=0.264  Sum_probs=101.2

Q ss_pred             hcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------------ChHHHHhhcCCCceEEEEeCCCCCccccc
Q 021783           10 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------------DLDEVASAIGPWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus        10 ~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~   77 (307)
                      +++|||+|++++|.|+.+.....  ....|++++.++.+            |+++++++++++++++++++|+||||.++
T Consensus       180 ll~pGD~Vlv~~P~y~~y~~~~~--l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~kai~l~nP~NPTG~vl  257 (521)
T TIGR03801       180 LLKKGDKIALMTPIFTPYLEIPE--LPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIKALFVVNPSNPPSVAM  257 (521)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHH--HhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCcEEEEeCCCCCCCCCC
Confidence            68999999999999988873321  23357888877652            45789988888999999999999999999


Q ss_pred             c---HHHHHHHHHHc--CCEEEEeCccCCCCc--CCcc--CCCccEEEeccccccccCCCceeEEEEEcCh
Q 021783           78 D---IRKIAEMAHAH--GALLLVDNSIMSPVL--SRPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        78 ~---~~~l~~~~~~~--~~~li~D~a~~~~~~--~~~~--~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      +   +++|+++|++|  +++||+|++|+.-..  ....  ..+..+++.|+||.+ |.+|.|+||++.+++
T Consensus       258 s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~f-g~~G~RlG~i~~~~~  327 (521)
T TIGR03801       258 SDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYF-GATGWRLGTIALHKD  327 (521)
T ss_pred             CHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhc-cCchhhhhhhhcCch
Confidence            7   77888889987  999999999974221  1111  124689999999999 778999999999865

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.91  E-value=1.3e-22  Score=179.17  Aligned_cols=122  Identities=15%  Similarity=0.133  Sum_probs=100.7

Q ss_pred             HhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC---C----ChHHHHhhcC---CCceEEEEeCCCCCcccccc
Q 021783            9 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---C----DLDEVASAIG---PWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         9 ~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~---~----d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~   78 (307)
                      ++++|||+|++++|+|+.+.    ..++..|++++.++.   +    |++.+++.+.   ++++++++++||||||.+++
T Consensus       119 ~~~~~Gd~Vlv~~P~y~~~~----~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s  194 (404)
T PTZ00376        119 RFLPAGTTVYVSNPTWPNHV----NIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPT  194 (404)
T ss_pred             HhcCCCCEEEEcCCCchhHH----HHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCC
Confidence            56799999999999999988    778899999999997   2    6888888874   45677888999999999996


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCccCCCCcC----------C-ccCCCccEEEeccccccccCCCceeEEEE
Q 021783           79 ---IRKIAEMAHAHGALLLVDNSIMSPVLS----------R-PLELGADIVMHSATKFIAGHSDVMAGVLA  135 (307)
Q Consensus        79 ---~~~l~~~~~~~~~~li~D~a~~~~~~~----------~-~~~~~~d~~~~s~~K~~~g~~g~~~G~~~  135 (307)
                         +++|+++|++||+++|+|++|..-...          . ....+..++++||||.+ +.+|+|+||++
T Consensus       195 ~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~~~GlRvG~~~  264 (404)
T PTZ00376        195 EEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNM-GLYGERIGALH  264 (404)
T ss_pred             HHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcc-cccccccceEE
Confidence               778888999999999999999633221          1 11123679999999999 77899999984

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.91  E-value=5.2e-23  Score=183.36  Aligned_cols=127  Identities=20%  Similarity=0.297  Sum_probs=100.4

Q ss_pred             hcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-------CChHHHHhhcCCCceEEEEeCCCCCcccccc---H
Q 021783           10 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---I   79 (307)
Q Consensus        10 ~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~---~   79 (307)
                      +++|||+|++++|.|+.+.....  ....|++++.++.       .|++++++++++++|++++++|+||||.+++   +
T Consensus       186 ll~pGD~Vlv~~P~y~~Y~~~~~--l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPTG~v~s~e~l  263 (527)
T PRK09275        186 LLKAGDKIALMTPIFTPYLEIPE--LPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPSVAMSDESL  263 (527)
T ss_pred             cCCCCCEEEEeCCChHHHHHHHH--HcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCcCCCCCHHHH
Confidence            68999999999999988873311  2234667777753       2678999988899999999999999999997   7


Q ss_pred             HHHHHHHHH--cCCEEEEeCccCCCCcC--Ccc--CCCccEEEeccccccccCCCceeEEEEEcCh
Q 021783           80 RKIAEMAHA--HGALLLVDNSIMSPVLS--RPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        80 ~~l~~~~~~--~~~~li~D~a~~~~~~~--~~~--~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      ++|+++|++  +|++||+|++|..-...  ...  ..+..+++.||||.+ +.+|.|+||++++++
T Consensus       264 ~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f-~mtG~RlG~i~~~~~  328 (527)
T PRK09275        264 EKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYF-GATGWRLGVIALHED  328 (527)
T ss_pred             HHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhc-cCcHhHHhhhhcCch
Confidence            888888965  49999999999742211  111  124789999999999 788999999999876

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.91  E-value=2.1e-23  Score=173.69  Aligned_cols=184  Identities=20%  Similarity=0.184  Sum_probs=139.3

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------------ChHHHHhhcCCCceEEEEeC
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------------DLDEVASAIGPWTKLVWVES   68 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------------d~~~l~~~l~~~~~~v~~~~   68 (307)
                      |+ .++++++++||+|++.+|.|..+.    ...+..|.++++++..             |+++++..++++||+|++++
T Consensus       105 ai~~~~~~l~~~GDeVii~eP~fd~Y~----~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~nt  180 (420)
T KOG0257|consen  105 AISSALLGLLNPGDEVIVFEPFFDCYI----PQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNT  180 (420)
T ss_pred             HHHHHHHHHcCCCCEEEEecCcchhhh----hHHhhcCCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeC
Confidence            44 477889999999999999998888    5667788888888863             89999999999999999999


Q ss_pred             CCCCcccccc---HHHHHHHHHHcCCEEEEeCccC----CCC--c---CCccCCCccEEEeccccccccCCCceeEEEEE
Q 021783           69 PTNPRQQICD---IRKIAEMAHAHGALLLVDNSIM----SPV--L---SRPLELGADIVMHSATKFIAGHSDVMAGVLAV  136 (307)
Q Consensus        69 ~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~----~~~--~---~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~  136 (307)
                      ||||||.+.+   +++|+++|++||+++|.|++|.    .+.  .   ..+..++..+-++|++|++ |..|.|.||+++
T Consensus       181 PhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf-~~TGWrlGW~ig  259 (420)
T KOG0257|consen  181 PHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTF-GVTGWRLGWAIG  259 (420)
T ss_pred             CCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEecccccee-eeeeeeeeeeec
Confidence            9999999996   8899999999999999999985    221  1   1466778999999999999 789999999999


Q ss_pred             cChhHHHHHHHHHHhcCCCCChhhHHHHhhc----c--------ccHHHHHHHHHHHHHHHHHHHhcC
Q 021783          137 KGERLAKELYFLQNAEGSGLAPFDCWICLRG----V--------KTMALRVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l--------~~~~~~~~~~~~~~~~l~~~l~~~  192 (307)
                       ++.+.......+.......+...+.+...+    +        .......+.+.++.+.+.+.|...
T Consensus       260 -p~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l  326 (420)
T KOG0257|consen  260 -PKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEEL  326 (420)
T ss_pred             -hHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence             455655555554443322221111111111    1        222335566677777777777754

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.91  E-value=1.7e-22  Score=179.24  Aligned_cols=258  Identities=16%  Similarity=0.123  Sum_probs=157.6

Q ss_pred             CCCeEEE-cCCCCcchHHHHh--hhcccCCcEEEEecC------CChHHHHhhcCCCceEEEEeCCCCCcccccc---HH
Q 021783           13 TGEEIVA-GDDLYGGTDRLLS--RVTPKTGVVVKRVNT------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IR   80 (307)
Q Consensus        13 ~gd~Vlv-~~~~~~~~~~~~~--~~~~~~g~~~~~v~~------~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~---~~   80 (307)
                      +||+|++ .+|+|+.+.....  ......+..+..++.      .|+++++  +.++++++++++|+||||.+++   ++
T Consensus       125 ~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~i~l~~P~NPTG~~~s~~~~~  202 (416)
T PRK09440        125 SLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDEDTGAICVSRPTNPTGNVLTDEELE  202 (416)
T ss_pred             CCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cCCCceEEEEecCCCCCCccCCHHHHH
Confidence            6899999 7999988763211  011222333333322      2667776  3567899999999999999997   77


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCc----CC--ccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCC
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVL----SR--PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS  154 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~----~~--~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~  154 (307)
                      +|+++|++||+++|+|++|+....    ..  ....+..++++||||+  +.+|+|+||++++++ +.+.+.........
T Consensus       203 ~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~vI~~~SfSK~--~~pGlRiG~~i~~~~-l~~~~~~~~~~~~~  279 (416)
T PRK09440        203 KLDALARQHNIPLLIDNAYGPPFPGIIFSEATPLWNPNIILCMSLSKL--GLPGVRCGIVIADEE-IIEALSNMNGIISL  279 (416)
T ss_pred             HHHHHHHHcCCcEEEeCCccccCCCcchhhcCccccCCeEEEeccccc--CCCcceEEEEeCCHH-HHHHHHHHHHHhcc
Confidence            889999999999999999974211    11  1113578999999994  668999999998754 55555554444333


Q ss_pred             CCChhhHHHHhhcccc--HHH-----HHHHHHHHHHHHHHHHhcCC-CccEEecCCCCCCCchHHHhhhccCCCceEEEE
Q 021783          155 GLAPFDCWICLRGVKT--MAL-----RVEKQQDNAQKIAEFLASHP-RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  226 (307)
Q Consensus       155 ~~~~~~~~~~~~~l~~--~~~-----~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  226 (307)
                      ..+...+.++...++.  +..     ..+...++.+.+.+.+++.. .. .+..           .  . ...+.++|+.
T Consensus       280 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~-~~~~-----------~--~-p~gg~fiw~~  344 (416)
T PRK09440        280 APGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDE-PCLI-----------H--K-PEGAIFLWLW  344 (416)
T ss_pred             CCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CeEE-----------e--c-CCCceEEEEE
Confidence            4455555555555432  111     11222333344455554321 10 0000           0  1 1236677787


Q ss_pred             eCC-HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHh
Q 021783          227 TGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALR  303 (307)
Q Consensus       227 ~~~-~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~  303 (307)
                      ++. .....++.+.+..+||.+.+|..|..-. .   .          ......+++|||++.  +++++.++.|.++++
T Consensus       345 ~~~~~~~~~~~~~~l~~~gV~v~pg~~F~~~~-~---~----------~~~~~~~~iRis~~~~~~~l~~~i~~l~~~~~  410 (416)
T PRK09440        345 FKDLPITTEELYQRLKARGVLVVPGHYFFPGL-D---E----------DWPHAHQCIRMNYVQDDEEIEKGIAILAEEVE  410 (416)
T ss_pred             CCCCCCCHHHHHHHHHHCCEEEechHhhCCCC-c---c----------ccCCcCceEEEEecCCHHHHHHHHHHHHHHHH
Confidence            764 2235677777878899999887643100 0   0          000013689999963  677777888877775


Q ss_pred             c
Q 021783          304 T  304 (307)
Q Consensus       304 ~  304 (307)
                      +
T Consensus       411 ~  411 (416)
T PRK09440        411 K  411 (416)
T ss_pred             H
Confidence            4

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.91  E-value=7.9e-23  Score=177.94  Aligned_cols=255  Identities=17%  Similarity=0.155  Sum_probs=164.3

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcC--CCceEEEEeCCCCCccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG--PWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~--~~~~~v~~~~~~n~tG~~~   77 (307)
                      .++..++++||+|++..+.+++..  +...++..|++++.++.+     |++++++.++  ++++++++++++|++|...
T Consensus        65 ~~~~~~~~~~~~vi~~~~~~~~~~--~~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~  142 (355)
T TIGR03301        65 ATIGSLVPRDGKLLVLINGAYGER--LAKICEYLGIPHTDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILN  142 (355)
T ss_pred             HHHHhccCCCCeEEEECCCchhhH--HHHHHHHcCCceEEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchh
Confidence            445556788888776555443332  225567789999988863     7899999886  4567788889999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH--------
Q 021783           78 DIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--------  148 (307)
Q Consensus        78 ~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~--------  148 (307)
                      |+++|.++|++||+++|+|++++.+..+ +...+++|++++|+||+++|++|  .|+++++++.+.. +...        
T Consensus       143 ~~~~i~~l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~l~~~~G--~g~~~~~~~~~~~-~~~~~~~~~~~~  219 (355)
T TIGR03301       143 PLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKCLEGVPG--FGFVIARRDLLEA-SAGNARSLYLDL  219 (355)
T ss_pred             HHHHHHHHHHHcCCEEEEEeccccCCcccchhhcCccEEEecCCcccccCCc--eeEEEECHHHHHH-hhCCCCCceeeH
Confidence            9999999999999999999999887655 56677899999999999888888  7999998765433 2200        


Q ss_pred             -------HH--hcCCCCChhhHHHHhhcccc------HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHh
Q 021783          149 -------QN--AEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  213 (307)
Q Consensus       149 -------~~--~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~  213 (307)
                             ..  ....+.+......+..+++.      +....++..++.+.+.+.+++.. + .+..+            
T Consensus       220 ~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g-~-~~~~~------------  285 (355)
T TIGR03301       220 YDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALG-F-QPLLP------------  285 (355)
T ss_pred             HHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcC-C-eeecC------------
Confidence                   00  01112222222222223322      34444555666666777665431 1 11111            


Q ss_pred             hhccCCCceEEEEeCCH--HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCCh
Q 021783          214 SQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDV  291 (307)
Q Consensus       214 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~  291 (307)
                       .....+.++++.++..  ....++.+.+.++||.++.|..+                        ..+++||++.....
T Consensus       286 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~------------------------~~~~iRis~~~~~~  340 (355)
T TIGR03301       286 -ERWQSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPGKLT------------------------LADTFRIGTIGEID  340 (355)
T ss_pred             -CCCCCCcEEEEECCCCCcchHHHHHHHHHHCCEEEECCccc------------------------cccEEEEecCCCCC
Confidence             0011233566776531  23567888888889988776531                        02469999865344


Q ss_pred             HHHHHHHHHHHh
Q 021783          292 NDLISDLDKALR  303 (307)
Q Consensus       292 ~~~i~~l~~~l~  303 (307)
                      ++.++.+.+.|+
T Consensus       341 ~~~i~~~~~~l~  352 (355)
T TIGR03301       341 AADIERLLEAIK  352 (355)
T ss_pred             HHHHHHHHHHHH
Confidence            455555555444

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.91  E-value=3.1e-22  Score=169.47  Aligned_cols=263  Identities=20%  Similarity=0.218  Sum_probs=189.6

Q ss_pred             cHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcC--CCceEEEEeCCCCCc
Q 021783            2 AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG--PWTKLVWVESPTNPR   73 (307)
Q Consensus         2 aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~--~~~~~v~~~~~~n~t   73 (307)
                      +|+ +++..+++|||+||+.....++..  |.+.++.+|++++.+...     |+++++++++  ++.++|.++|..++|
T Consensus        67 ~amEAav~sl~~pgdkVLv~~nG~FG~R--~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETST  144 (383)
T COG0075          67 LAMEAAVASLVEPGDKVLVVVNGKFGER--FAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETST  144 (383)
T ss_pred             HHHHHHHHhccCCCCeEEEEeCChHHHH--HHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcc
Confidence            355 677789999999998888776666  559999999999998874     9999999998  578899999999999


Q ss_pred             cccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH------
Q 021783           74 QQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY------  146 (307)
Q Consensus        74 G~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~------  146 (307)
                      |...|+++|+++|++||.++|+|++.+.|..+ ++++||+|+++++.+|++++|+|  .|++..+++.+.....      
T Consensus       145 Gvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPG--la~v~~S~~a~e~~~~~~~~~~  222 (383)
T COG0075         145 GVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPG--LAFVAVSERALEAIEERKHPSF  222 (383)
T ss_pred             cccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhccCCCc--cceeEECHHHHHHHhcCCCCce
Confidence            99999999999999999999999999988877 99999999999999999999999  9999999776543221      


Q ss_pred             ---------HHHH--hcCCCCChhhHHHHhhcc-----ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchH
Q 021783          147 ---------FLQN--AEGSGLAPFDCWICLRGV-----KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE  210 (307)
Q Consensus       147 ---------~~~~--~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~  210 (307)
                               .+..  ....+++....+....++     +.++.+++++..+...+++.++....         +      
T Consensus       223 ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl---------~------  287 (383)
T COG0075         223 YLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGL---------E------  287 (383)
T ss_pred             eecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCC---------c------
Confidence                     1111  112233333333333333     34678899999999999998886531         1      


Q ss_pred             HHhhhccCCCceEEEEeCC-HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEe-c-
Q 021783          211 LHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV-G-  287 (307)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~-~-  287 (307)
                      ++.++......+..+..+. .+........+++.|+.+..|.-                       ......+||+. | 
T Consensus       288 ~~~~~~~~s~tvta~~~P~g~~~~~~~~~~~~~~g~~i~gg~~-----------------------~l~gkifRIGhMG~  344 (383)
T COG0075         288 LFADPERRSPTVTAIKVPEGVDDKKVRRALLKEYGVEIAGGQG-----------------------PLKGKIFRIGHMGN  344 (383)
T ss_pred             cccCcccCCCceEEEECCCCCCcHHHHHHHHHhCCEEeccccc-----------------------ccCccEEEEecCcc
Confidence            1111111123455566543 22222233445556777766543                       11234599987 3 


Q ss_pred             --cCChHHHHHHHHHHHhcCC
Q 021783          288 --IEDVNDLISDLDKALRTGP  306 (307)
Q Consensus       288 --~~~~~~~i~~l~~~l~~~~  306 (307)
                        ..++...+..|..+|.+++
T Consensus       345 ~~~~dv~~~l~ale~~L~~~g  365 (383)
T COG0075         345 VRPEDVLAALAALEAALRELG  365 (383)
T ss_pred             CCHHHHHHHHHHHHHHHHHcC
Confidence              2788888888888887653

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.91  E-value=3.2e-22  Score=174.00  Aligned_cols=232  Identities=16%  Similarity=0.141  Sum_probs=156.9

Q ss_pred             cHH-HHHHHh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCc
Q 021783            2 AAL-AAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPR   73 (307)
Q Consensus         2 aal-~~~~~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~t   73 (307)
                      +|+ .++.++ ++|||+|++++++|+++.    ..+...|++++.+|.+      |++++++.++++|++|+   |+|++
T Consensus        57 ~aL~~~l~al~~~pGd~Viv~~~t~~~~~----~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~~tk~Ii---p~~~~  129 (376)
T TIGR02379        57 AALEMAALLLDIQPGDEVIMPSYTFVSTA----NAFVLRGAKIVFVDIRPDTMNIDETLIESAITHRTKAIV---PVHYA  129 (376)
T ss_pred             HHHHHHHHHcCCCCcCEEEECCCCcHHHH----HHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcCceEEE---EeCCC
Confidence            355 344555 789999999999999887    4456779999999874      77899999999999987   56689


Q ss_pred             cccccHHHHHHHHHHcCCEEEEeCccCCCCcCCccCCC--ccEEEecccc--ccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           74 QQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSATK--FIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        74 G~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~d~~~~s~~K--~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                      |...|+++|.++|++||+++|+|++|+.+...+....|  .|+.++||++  .+.  +|.++|+++++++++.+.+..+.
T Consensus       130 G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~~~~~~~fSf~~~K~l~--~g~~gG~v~~~~~~~~~~~~~~~  207 (376)
T TIGR02379       130 GVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGRALGSIGHLGTFSFHETKNYT--SGGEGGALLINDQAFIERAEIIR  207 (376)
T ss_pred             CCccCHHHHHHHHHHCCCEEEEECccccCCccCCcccCCCCCEEEEeCCCCCcCc--ccCCceEEEECCHHHHHHHHHHH
Confidence            99999999999999999999999999987643332333  3777788755  442  34458999998888877776655


Q ss_pred             HhcC---------------------CCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCc
Q 021783          150 NAEG---------------------SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG  208 (307)
Q Consensus       150 ~~~~---------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~  208 (307)
                      ....                     ..++...+.+....++.++...++..++++...+.|...........+....  +
T Consensus       208 ~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~--~  285 (376)
T TIGR02379       208 EKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADRINQDRLATWQLYQDALKPLEEKGIIELPSIPN--G  285 (376)
T ss_pred             HhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCC--C
Confidence            4221                     1233455556656677666666666666666666665432100011111100  0


Q ss_pred             hHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCC
Q 021783          209 HELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGS  251 (307)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~  251 (307)
                             ......++++.++...+.+++.+.|+.+||.++.+.
T Consensus       286 -------~~~~~~~~~i~~~~~~~r~~l~~~L~~~gI~~~~~~  321 (376)
T TIGR02379       286 -------CQHNAHMFYIKLKDEDDRNELIKYLKEQEIMAVFHY  321 (376)
T ss_pred             -------CeeeeEEEEEEECCcCCHHHHHHHHHHCCCCccccC
Confidence                   000113455666543347899999999999887543

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK08637 hypothetical protein; Provisional

Probab=99.91  E-value=5.3e-22  Score=174.35  Aligned_cols=253  Identities=14%  Similarity=0.130  Sum_probs=155.3

Q ss_pred             HHHHhcCCCCeEEEcCCCCcchHHHHhhhc-ccCCcEEEEecC--C----ChHHHHhhcC----CCceEEEEeCCCCCcc
Q 021783            6 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVT-PKTGVVVKRVNT--C----DLDEVASAIG----PWTKLVWVESPTNPRQ   74 (307)
Q Consensus         6 ~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~-~~~g~~~~~v~~--~----d~~~l~~~l~----~~~~~v~~~~~~n~tG   74 (307)
                      ++.++++|||+|++++|+|+.+.    ..+ ...|++++.+|.  +    |++++++.++    +.++++++++|+||||
T Consensus        85 ~~~~l~~~gd~Vlv~~P~y~~~~----~~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG  160 (388)
T PRK08637         85 VADLFVDQGDTVLLPDHNWGNYK----LTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTG  160 (388)
T ss_pred             HHHHhcCCCCEEEEcCCCCccHH----HHHHHhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCC
Confidence            33457899999999999998887    332 357999998886  2    6788888875    5566777889999999


Q ss_pred             cccc---HHHHHHHHHH-----cCCEEEEeCccCCCCcC-----C-----ccCCCcc--EEEeccccccccCCCceeEEE
Q 021783           75 QICD---IRKIAEMAHA-----HGALLLVDNSIMSPVLS-----R-----PLELGAD--IVMHSATKFIAGHSDVMAGVL  134 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~-----~~~~li~D~a~~~~~~~-----~-----~~~~~~d--~~~~s~~K~~~g~~g~~~G~~  134 (307)
                      .+++   +++|+++|++     |+++||+|++|..-.+.     .     ....+..  ++++|+||.+ +.+|+|+||+
T Consensus       161 ~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~-~~pGlRlG~~  239 (388)
T PRK08637        161 YTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEE-FVWGFRVGFI  239 (388)
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccC-CCcccceEEE
Confidence            9986   6677777765     89999999999632211     1     1112232  4456999988 5789999999


Q ss_pred             EEcC-----hhHHHHHHHH----HHhcCCCCChhhHHHHhhcccc--HHHHH----HHHHHHHHHHHHHHhcCCCccEEe
Q 021783          135 AVKG-----ERLAKELYFL----QNAEGSGLAPFDCWICLRGVKT--MALRV----EKQQDNAQKIAEFLASHPRVKKVN  199 (307)
Q Consensus       135 ~~~~-----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~--~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~  199 (307)
                      +...     +.+.+.+...    ........+...+..+...++.  +....    +...+..+.+.+.++...      
T Consensus       240 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~------  313 (388)
T PRK08637        240 TFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYDGK------  313 (388)
T ss_pred             EEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC------
Confidence            9753     4444444321    1111223344445544444432  11111    122222333334443221      


Q ss_pred             cCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCC
Q 021783          200 YAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT  278 (307)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~  278 (307)
                         +.  +++...  + ...+.++|+++++.+ ..++.+.+ +++||.+..+                           .
T Consensus       314 ---~~--~~~~~~--~-~~~g~~~~~~l~~~~-~~~l~~~l~~~~gv~~~~~---------------------------~  357 (388)
T PRK08637        314 ---YD--DAWQAY--P-FNSGYFMCLKLKGVD-AEELRVHLLEKYGIGTIAL---------------------------N  357 (388)
T ss_pred             ---CC--CCcccc--c-ccceEEEEecCChHH-HHHHHHHHhhhcceEEEec---------------------------c
Confidence               00  011111  1 123556666776443 67787877 4678865421                           1


Q ss_pred             CCeEEEEecc---CChHHHHHHHHHHHhcC
Q 021783          279 EDLVRISVGI---EDVNDLISDLDKALRTG  305 (307)
Q Consensus       279 ~~~iRis~~~---~~~~~~i~~l~~~l~~~  305 (307)
                      ++++||+++.   +++++.++.|.++++++
T Consensus       358 ~~~iRi~~~~~~~~~i~~~~~~l~~~~~~~  387 (388)
T PRK08637        358 ETDLRIAFSCVEEEDIPELFDSIYKAIKDL  387 (388)
T ss_pred             CCceEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence            4569999975   67888888888888754

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.91  E-value=2.9e-22  Score=176.22  Aligned_cols=255  Identities=16%  Similarity=0.095  Sum_probs=166.4

Q ss_pred             HHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcC----CCceEEEEeCCCCCccccccH
Q 021783            4 LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         4 l~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      +.++.+++++||+|+++++.|+++.    ..+...|++++.++..|++++++.+.    +++++|++++++|+||.+.|+
T Consensus       107 ~~a~~~~~~~gd~vi~~~~~~~~~~----~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~  182 (385)
T TIGR01825       107 QGVLSALLRKGDIVLSDELNHASII----DGLRLTKATKKIYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPL  182 (385)
T ss_pred             HHHHHHhCCCCCEEEEEccccHHHH----HHHHhcCCceEEeCCCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCH
Confidence            3556667899999999999998876    33445688888888778888888765    368899999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcC---------CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH-
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLS---------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-  149 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~---------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~-  149 (307)
                      ++|.++|++||+++|+|++|+.+.+.         .....+.|++++|+||+++ .+   +|+++.+++ +.+.+.... 
T Consensus       183 ~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~---gG~~~~~~~-~~~~~~~~~~  257 (385)
T TIGR01825       183 PEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIG-VV---GGYAAGHKE-LIEYLKNRAR  257 (385)
T ss_pred             HHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhh-cC---CCEEecCHH-HHHHHHHhCc
Confidence            99999999999999999999765432         0112468999999999994 34   588887654 434343322 


Q ss_pred             Hhc-CCCCChhhHHHHhhccccH---HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEE
Q 021783          150 NAE-GSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  225 (307)
Q Consensus       150 ~~~-~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  225 (307)
                      ... ++...+..+..+..+++.+   ....++..++.+.+.+.|++.         +++      +.    ...++++.+
T Consensus       258 ~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~---------g~~------~~----~~~~~~~~~  318 (385)
T TIGR01825       258 PFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGKL---------GYD------TG----GSETPITPV  318 (385)
T ss_pred             cccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc---------CCC------CC----CCCCCEEEE
Confidence            121 2222333333333444322   123344455555566666532         111      00    012346666


Q ss_pred             EeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHH
Q 021783          226 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKA  301 (307)
Q Consensus       226 ~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~  301 (307)
                      .++.......+.+.|..+||.++.+....                    ...+.+++|++++.    +++++.++.+++.
T Consensus       319 ~~~~~~~~~~~~~~L~~~gi~v~~~~~~~--------------------~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~  378 (385)
T TIGR01825       319 VIGDEKAAQEFSRRLFDEGIFAQSIVFPT--------------------VPRGTARIRNIPTAEHTKDDLDQALDAYEKV  378 (385)
T ss_pred             EECCHHHHHHHHHHHHHCCcEEcccCCCC--------------------CCCCCceEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            66544346678888877799875432200                    01123579999853    7888888888888


Q ss_pred             HhcCC
Q 021783          302 LRTGP  306 (307)
Q Consensus       302 l~~~~  306 (307)
                      +++.+
T Consensus       379 ~~~~~  383 (385)
T TIGR01825       379 GKELG  383 (385)
T ss_pred             HHHhC
Confidence            76653

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PLN02397 aspartate transaminase

Probab=99.91  E-value=4.7e-22  Score=176.11  Aligned_cols=125  Identities=15%  Similarity=0.163  Sum_probs=99.9

Q ss_pred             HHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-------CChHHHHhhcC---CCceEEEEeCCCCCccc
Q 021783            6 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIG---PWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         6 ~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~---~~~~~v~~~~~~n~tG~   75 (307)
                      .+++++.|||+|++++|+|+.+.    ..++..|++++.++.       .|++.+++.+.   ++++++++++||||||.
T Consensus       134 ~~~~~~~pGd~Vlv~~P~y~~y~----~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~  209 (423)
T PLN02397        134 EFLARFYPGSTIYIPNPTWGNHH----NIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGV  209 (423)
T ss_pred             HHHHHhCCCCEEEEeCCCchhHH----HHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCC
Confidence            34455579999999999999888    667888999999875       16777777664   56788888999999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-------C---cc-CCCccEEEeccccccccCCCceeEEEE
Q 021783           76 ICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-------R---PL-ELGADIVMHSATKFIAGHSDVMAGVLA  135 (307)
Q Consensus        76 ~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-------~---~~-~~~~d~~~~s~~K~~~g~~g~~~G~~~  135 (307)
                      +++   +++|+++|++||+++|+|++|..-...       .   .. .....++++||||.+ +++|+|+||++
T Consensus       210 v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~-~~~G~RvG~~v  282 (423)
T PLN02397        210 DPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNM-GLYGERVGALS  282 (423)
T ss_pred             CCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccC-CCccccceEEE
Confidence            996   778899999999999999999743221       0   11 113579999999999 78899999985

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.91  E-value=7.5e-22  Score=169.67  Aligned_cols=242  Identities=17%  Similarity=0.183  Sum_probs=156.4

Q ss_pred             HHHHHhcCCCCeEEEc---CCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCcccc---cc
Q 021783            5 AAVTHLLGTGEEIVAG---DDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI---CD   78 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~---~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~---~~   78 (307)
                      .++.++++|||+|+++   .|.|+++.    ..++..|+++..  .+++++++.  .+++++|+++. +|++|.+   .+
T Consensus        86 ~~~~al~~~gd~Vli~~~d~p~~~s~~----~~~~l~ga~~~~--~~~l~~l~~--~~~~~lIiitg-~s~~G~v~~~~~  156 (346)
T TIGR03576        86 ATILALEPPGRKVVHYLPEKPAHPSIP----RSCKLAGAEYFE--SDELSELKK--IDGTSLVVITG-STMDLKVVSEED  156 (346)
T ss_pred             HHHHHhCCCCCEEEECCCCCCCchhHH----HHHHHcCCEEec--cCCHHHHhh--CcCceEEEEEC-CCCCCcccCHHH
Confidence            5667788999999975   45776665    556778887643  356666543  35678888865 5889998   47


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcC-----CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcC
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  153 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~  153 (307)
                      +++|+++|+++|+++++|++|+.+...     .....+.|++++|+||++.   |.|+||++++++ +.+.+........
T Consensus       157 L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKala---G~r~G~v~~~~~-li~~l~~~~~~~~  232 (346)
T TIGR03576       157 LKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMD---GPRGGLLAGRKE-LVDKIKSVGEQFG  232 (346)
T ss_pred             HHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhcc---ccceEEEEeCHH-HHHHHHHhhcCcc
Confidence            999999999999999999999976421     1223467899999999663   556999999865 5555555554444


Q ss_pred             CCCChhhHHHHhhccccHH--HHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHH
Q 021783          154 SGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA  231 (307)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (307)
                      .+.++..+..+..+++...  ...+.+.++.+.+.+.++.           +.      ++    +...+++++++++.+
T Consensus       233 ~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~-----------~~------~~----~~~~~f~~~~~~~~~  291 (346)
T TIGR03576       233 LEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDK-----------LN------VE----RTPTGFVIKGVEEEK  291 (346)
T ss_pred             cCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh-----------CC------CC----cCCCeEEEEeCCCCC
Confidence            4445556666666665432  1122222222222333321           10      00    112446777775322


Q ss_pred             HHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCC-----hHHHHHHHHHHH
Q 021783          232 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED-----VNDLISDLDKAL  302 (307)
Q Consensus       232 ~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~-----~~~~i~~l~~~l  302 (307)
                      ..+.+.+.+..+||.+++|..|.                      ..++++|||++..+     .+.+++.|++.+
T Consensus       292 ~~~~~~~ll~~~gV~v~~~~~f~----------------------~~~~~vRis~~~~~~~~~~~~~~~~al~~~~  345 (346)
T TIGR03576       292 LIEIGLDLLRNYGIITITAVGMP----------------------GASKTLRFDLAAKDAERIGDDYLVEAVKDSL  345 (346)
T ss_pred             HHHHHHHHHHhCCEEEeCCcccC----------------------CCCCeEEEEEecChHHhcCHHHHHHHHHhcc
Confidence            23455566777899988876531                      12578999998744     778888877665

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.90  E-value=5.7e-23  Score=194.29  Aligned_cols=280  Identities=12%  Similarity=0.013  Sum_probs=171.0

Q ss_pred             cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------------C--hHHHHhhc----------CCCceEEE
Q 021783           11 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------------D--LDEVASAI----------GPWTKLVW   65 (307)
Q Consensus        11 ~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------------d--~~~l~~~l----------~~~~~~v~   65 (307)
                      +++||+|+++..+|.+.. .|...++..|++++.++.+             +  .+++++.+          .+++++|.
T Consensus       119 ~~~gd~Iv~t~~eH~svl-~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa  197 (805)
T PLN02724        119 WSSESHFCYTLENHNSVL-GIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFA  197 (805)
T ss_pred             CCCCCeEEEeeccccchH-HHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEE
Confidence            588999999999997776 5556677889999998764             1  14455543          24678999


Q ss_pred             EeCCCCCccccccHHHHHHHHHHc--------CCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEE
Q 021783           66 VESPTNPRQQICDIRKIAEMAHAH--------GALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAV  136 (307)
Q Consensus        66 ~~~~~n~tG~~~~~~~l~~~~~~~--------~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~  136 (307)
                      +++.+|.||.+.|++.+..+++..        ++++++|++|+.|+.+ +..++++|++++|+|||+++|.|  .|++++
T Consensus       198 ~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G--~G~L~v  275 (805)
T PLN02724        198 FPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPTG--LGALLV  275 (805)
T ss_pred             EEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCChhhcCCCEEEEecceeccCCCC--ceEEEE
Confidence            999999999999999775555432        3589999999999988 88888999999999999977999  999999


Q ss_pred             cChhHHHHHHHHH-----------------------HhcCCCCChhhHHHHhhccccHHH-HHHHHHHHHH----HHHHH
Q 021783          137 KGERLAKELYFLQ-----------------------NAEGSGLAPFDCWICLRGVKTMAL-RVEKQQDNAQ----KIAEF  188 (307)
Q Consensus       137 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~----~l~~~  188 (307)
                      +++..........                       +....+.+......+..+++.+.. .++++.+...    ++.+.
T Consensus       276 r~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~  355 (805)
T PLN02724        276 RRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANS  355 (805)
T ss_pred             ehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            9764432111100                       111111221222222233333222 2333334334    44444


Q ss_pred             HhcCCCccEEecCCCCCCCchHHHhhh-----ccCCCceEEEEeCCHH----HHHHHHhcCCcceeecCCCCccceeecc
Q 021783          189 LASHPRVKKVNYAGLPEHPGHELHYSQ-----AKGAGSVLSFLTGSLA----LSKHVVETTKYFSITVSFGSVKSLISMP  259 (307)
Q Consensus       189 l~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~v~~g~~~~~~~~p  259 (307)
                      |++.+.        -...|.++++...     ...++++++|.+.+.+    ....+...+..+||.++.|.++   .++
T Consensus       356 L~~l~~--------~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~~C---a~~  424 (805)
T PLN02724        356 LRNLKH--------GNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGCFC---NPG  424 (805)
T ss_pred             HHhccC--------CCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeecccc---Cch
Confidence            443321        0011223333211     1236789999985432    1122223345679999999983   333


Q ss_pred             cccCCCCCcHHHHH--------------hc-CCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 021783          260 CFMSHASIPVEVRQ--------------AR-GLTEDLVRISVGIEDVNDLISDLDKALRT  304 (307)
Q Consensus       260 ~~~~~~~~~~~~~~--------------~~-~~~~~~iRis~~~~~~~~~i~~l~~~l~~  304 (307)
                      .+..+..+..+...              .. +...+.+|+|++..++.+.++.|.++|++
T Consensus       425 ~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~  484 (805)
T PLN02724        425 ACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIIS  484 (805)
T ss_pred             HHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHH
Confidence            22222222222111              01 22348999999997777777777777764

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.90  E-value=4.2e-22  Score=176.30  Aligned_cols=254  Identities=17%  Similarity=0.173  Sum_probs=164.6

Q ss_pred             HHHHHhc--CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcC----CCceEEEEeCCCCCcccccc
Q 021783            5 AAVTHLL--GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         5 ~~~~~~~--~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~   78 (307)
                      .++..+.  .+||.|+++...|.+..    ..++..|++++.++.+|.+++++.+.    +++++|++++|+||||.+.|
T Consensus       121 ~~i~~l~~~~~g~~vi~~~~~h~s~~----~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~  196 (410)
T PRK13392        121 AALSTLGKLLPGCVILSDALNHASMI----EGIRRSGAEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIAP  196 (410)
T ss_pred             HHHHHHhcCCCCCEEEEehhhhHHHH----HHHHHcCCeEEEEeCCCHHHHHHHHHhccCCCCEEEEEeCCCCCCccccc
Confidence            4444443  48999998888887776    34566889988888777777766653    57899999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcC-Cc--------cCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLS-RP--------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~-~~--------~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                      +++|.++|++||+++|+|++|+.|.+. ..        .....|++++|+||++++ .   +||++++++ +.+.+....
T Consensus       197 l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~-~---GG~~~~~~~-~~~~l~~~~  271 (410)
T PRK13392        197 IEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGC-L---GGYIAASAD-LIDFVRSFA  271 (410)
T ss_pred             HHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhc-c---cchhhcCHH-HHHHHHHhC
Confidence            999999999999999999999865531 11        111468999999999954 3   488887644 444444333


Q ss_pred             Hh--cCCCCChhhHHHHhhccccH---HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEE
Q 021783          150 NA--EGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  224 (307)
Q Consensus       150 ~~--~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  224 (307)
                      ..  .....++..+..+..+++..   ....+++.++.+.+.+.++...         ++-.          +..++++.
T Consensus       272 ~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~~~----------~~~~~~~~  332 (410)
T PRK13392        272 PGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNANG---------IPVM----------PSPSHIVP  332 (410)
T ss_pred             cchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC---------CCCC----------CCCCCEEE
Confidence            22  12223334444444444322   2333445566666666665431         1101          11355666


Q ss_pred             EEeCCHHHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHH
Q 021783          225 FLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLD  299 (307)
Q Consensus       225 ~~~~~~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~  299 (307)
                      +.++......++.+.|. .+||.++.+..      |..              ..+.+++||+++.    ++++++++.|.
T Consensus       333 i~~~~~~~~~~~~~~L~~~~GI~v~~~~~------p~~--------------~~~~~~lRis~~~~~t~edid~l~~aL~  392 (410)
T PRK13392        333 VMVGDPTLCKAISDRLMSEHGIYIQPINY------PTV--------------PRGTERLRITPTPLHDDEDIDALVAALV  392 (410)
T ss_pred             EEeCCHHHHHHHHHHHHHhCCEEEeeeCC------CCC--------------CCCCceEEEEECCCCCHHHHHHHHHHHH
Confidence            66654444677888774 67998876432      100              0124579999864    67777777777


Q ss_pred             HHHhcCC
Q 021783          300 KALRTGP  306 (307)
Q Consensus       300 ~~l~~~~  306 (307)
                      +++++.+
T Consensus       393 ~~~~~~~  399 (410)
T PRK13392        393 AIWDRLE  399 (410)
T ss_pred             HHHHHcC
Confidence            7766544

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.90  E-value=2.1e-22  Score=170.75  Aligned_cols=274  Identities=23%  Similarity=0.270  Sum_probs=182.8

Q ss_pred             cHH-HHHHHh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCc
Q 021783            2 AAL-AAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPR   73 (307)
Q Consensus         2 aal-~~~~~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~t   73 (307)
                      +|+ .++.++ ++|||+|++++.+|.++.    +..-..|++++++|.+      |++.++++|+++||+|+..|   -.
T Consensus        60 ~AL~laL~al~ig~GDeVI~ps~TfvATa----n~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVh---l~  132 (374)
T COG0399          60 AALHLALLALAIGPGDEVIVPSFTFVATA----NAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVH---LA  132 (374)
T ss_pred             HHHHHHHHhcCCCCCCEEEecCCchHHHH----HHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEeh---hc
Confidence            355 334432 799999999999999998    6667889999999986      89999999999999999544   46


Q ss_pred             cccccHHHHHHHHHHcCCEEEEeCccCCCCcCCccCCC--ccEEEecc--ccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           74 QQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSA--TKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        74 G~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~d~~~~s~--~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                      |..+|+++|.++|++||++||+|++|+.|........|  -|+.++||  .|.+..  | .||+++++++++.+..+.+.
T Consensus       133 G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~itt--g-EGGav~tnd~ela~k~~~lr  209 (374)
T COG0399         133 GQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTT--G-EGGAVVTNDEELAEKARSLR  209 (374)
T ss_pred             cCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCcccccccceEEEEecCCCCccc--c-CceEEEeCCHHHHHHHHHHH
Confidence            89999999999999999999999999999876444444  47888888  677732  3 49999999999988877665


Q ss_pred             HhcC----------------CCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHh
Q 021783          150 NAEG----------------SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  213 (307)
Q Consensus       150 ~~~~----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~  213 (307)
                      ...-                +.+...++.+....|+.++...++..++++...+.|++.+.+   ..+.           
T Consensus       210 ~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~~~~~---~~p~-----------  275 (374)
T COG0399         210 NHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLDEINERRREIAQIYAEALKGLPGI---TLPP-----------  275 (374)
T ss_pred             HhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc---cccC-----------
Confidence            4322                234456666767777777666666667777777767655421   1111           


Q ss_pred             hhccCCC--ceEEEEeCCH-HHHHHHHhcCCcceeecCCCCccceeecccccCC-----CCCcHHHHHhcCCCCCeEEEE
Q 021783          214 SQAKGAG--SVLSFLTGSL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH-----ASIPVEVRQARGLTEDLVRIS  285 (307)
Q Consensus       214 ~~~~~~~--~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~-----~~~~~~~~~~~~~~~~~iRis  285 (307)
                      .......  ..+.+.++.. ...+.+.+.|++.||.+ ......+..+|.....     ..++....    ..+..+.+.
T Consensus       276 ~~~~~~~~~~~~~i~~~~~~~~R~~l~~~L~~~gi~~-~~~~~P~~~~~~~~~~~~~~~~~lp~ae~----~~~r~l~LP  350 (374)
T COG0399         276 EPDGAVHAWHLYTILVDEEGISRDALMESLKEAGVGA-VVYFRPLHLQPAYRQLGYFPEGDLPNAED----LSERILSLP  350 (374)
T ss_pred             CCCCceeeeeeeEEEecCCCCCHHHHHHHHHhCCCCc-eEEeeccccchhhhcccccccCCCchHHH----HhhCeEEcc
Confidence            1111111  2333344432 44788899999888872 1111112222211111     12222211    123557776


Q ss_pred             ecc----CChHHHHHHHHHHHhc
Q 021783          286 VGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       286 ~~~----~~~~~~i~~l~~~l~~  304 (307)
                      +.-    ++++++++.|.+++.+
T Consensus       351 ~~p~l~~~~~~~V~~~l~~~~~~  373 (374)
T COG0399         351 LHPNLSEEDVDRVIEALKEVLGS  373 (374)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhcc
Confidence            643    7888888888877653

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.90  E-value=9.3e-22  Score=172.27  Aligned_cols=267  Identities=11%  Similarity=0.120  Sum_probs=168.3

Q ss_pred             cHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHh---hcC-----------CCceEEEEe
Q 021783            2 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVAS---AIG-----------PWTKLVWVE   67 (307)
Q Consensus         2 aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~---~l~-----------~~~~~v~~~   67 (307)
                      |+.+++.+++++||+|+++++.|+++...    +...+++++.++.+|++++++   .+.           +++++|+++
T Consensus        70 a~~~~i~~l~~~GD~Vl~~~~~h~s~~~~----~~l~~~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E  145 (392)
T PLN03227         70 TTSSTVAAFAKRGDLLVVDRGVNEALLVG----VSLSRANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVE  145 (392)
T ss_pred             HHHHHHHHhCCCCCEEEEeccccHHHHHH----HHHcCCeEEEeCCCCHHHHHHHHHHhhhhccccccccCCCcEEEEEc
Confidence            34467777899999999999999888743    344567888888877766555   332           368899999


Q ss_pred             CCCCCccccccHHHHHHHHHHcCCEEEEeCccCCCCcCC----------c-cCCCccEEEeccccccccCCCceeEEEEE
Q 021783           68 SPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR----------P-LELGADIVMHSATKFIAGHSDVMAGVLAV  136 (307)
Q Consensus        68 ~~~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~----------~-~~~~~d~~~~s~~K~~~g~~g~~~G~~~~  136 (307)
                      +++|++|.+.|++++.++|++||+++|+|++|+.|....          . ...++|+++.|++|++ |+.   +|++++
T Consensus       146 ~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~-g~~---gg~v~~  221 (392)
T PLN03227        146 GLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAF-GSV---GGMTVG  221 (392)
T ss_pred             CCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhh-hcc---CcEEec
Confidence            999999999999999999999999999999998554321          1 1236799999999998 444   688877


Q ss_pred             cChhHHHHHHHHHH--hcCCCCChhhHHHHhhccccH---HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCc-hH
Q 021783          137 KGERLAKELYFLQN--AEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG-HE  210 (307)
Q Consensus       137 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~-~~  210 (307)
                      +++ +.+.+.....  ..+...++..++.+..++...   +.+.++..++.+.+.+.|++..      ++...+..+ ..
T Consensus       222 ~~~-~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~~------~~~~~~~rg~~~  294 (392)
T PLN03227        222 SEE-VVDHQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNSS------HPYALKLRNRLV  294 (392)
T ss_pred             CHH-HHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC------Cccccccccccc
Confidence            754 4333332221  122233354555554444322   3456666777777777776421      111111100 00


Q ss_pred             HHhhhccCCCceEEEEeCCHHH---------HHHHHhcCCcceeecCC-CCccceeecccccCCCCCcHHHHHhcCCCCC
Q 021783          211 LHYSQAKGAGSVLSFLTGSLAL---------SKHVVETTKYFSITVSF-GSVKSLISMPCFMSHASIPVEVRQARGLTED  280 (307)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~gi~v~~-g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  280 (307)
                      +.   ....++++.+.+.+...         ...+.+.+.++|+.+.. |.. .....|                ..++.
T Consensus       295 ~~---~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~-~~~~~~----------------~~P~~  354 (392)
T PLN03227        295 IT---SDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGH-VKKFLQ----------------LVPPP  354 (392)
T ss_pred             cC---CCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccc-cCCcCC----------------CCCCc
Confidence            00   02247788888865322         24777788888887753 211 000001                11245


Q ss_pred             eEEEEecc----CChHHHHHHHHHHHh
Q 021783          281 LVRISVGI----EDVNDLISDLDKALR  303 (307)
Q Consensus       281 ~iRis~~~----~~~~~~i~~l~~~l~  303 (307)
                      .+|++++.    +|+++.++.|.++++
T Consensus       355 ~iR~~~~~~~t~eei~~~~~~l~~~~~  381 (392)
T PLN03227        355 CLRVVANASHTREDIDKLLTVLGEAVE  381 (392)
T ss_pred             eEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            69999987    455555555555554

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.90  E-value=9.6e-22  Score=173.26  Aligned_cols=121  Identities=16%  Similarity=0.101  Sum_probs=98.6

Q ss_pred             cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-------CChHHHHhhcC---CCceEEEEeCCCCCcccccc--
Q 021783           11 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIG---PWTKLVWVESPTNPRQQICD--   78 (307)
Q Consensus        11 ~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~--   78 (307)
                      ++|||+|++++|+|+.+.    ..++..|++++.++.       .|++++++.+.   ++++++++++||||||.+++  
T Consensus       117 ~~pGd~Vlv~~P~y~~~~----~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~  192 (396)
T PRK09257        117 AFPDAKVWVSDPTWPNHR----AIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPE  192 (396)
T ss_pred             hCCCCeEEECCCCcccHH----HHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHH
Confidence            589999999999999998    667889999999985       16788888775   34567777899999999996  


Q ss_pred             -HHHHHHHHHHcCCEEEEeCccCCCCcC---------Ccc-CCCccEEEeccccccccCCCceeEEEEE
Q 021783           79 -IRKIAEMAHAHGALLLVDNSIMSPVLS---------RPL-ELGADIVMHSATKFIAGHSDVMAGVLAV  136 (307)
Q Consensus        79 -~~~l~~~~~~~~~~li~D~a~~~~~~~---------~~~-~~~~d~~~~s~~K~~~g~~g~~~G~~~~  136 (307)
                       +++|+++|++||+++|+|++|..-...         ... ..+..++++||||.+ +++|+|+||+++
T Consensus       193 ~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~~~GlRiG~~~~  260 (396)
T PRK09257        193 QWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNF-GLYGERVGALSV  260 (396)
T ss_pred             HHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcC-ccccccceeEEE
Confidence             788999999999999999999742211         011 124679999999999 778999999984

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.90  E-value=6.2e-22  Score=172.12  Aligned_cols=271  Identities=18%  Similarity=0.186  Sum_probs=175.7

Q ss_pred             HHHHHh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCccccc
Q 021783            5 AAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         5 ~~~~~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~   77 (307)
                      .++.++ +++||+|+++.++|.++.    ..+...|++++.++.+      |++++++.+++++++|++++   ++|...
T Consensus        48 ~~l~~l~~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~G~~~  120 (352)
T cd00616          48 LALRALGIGPGDEVIVPSFTFVATA----NAILLLGATPVFVDIDPDTYNIDPELIEAAITPRTKAIIPVH---LYGNPA  120 (352)
T ss_pred             HHHHHcCCCCCCEEEeCCcchHHHH----HHHHHcCCeEEEEecCCCcCCcCHHHHHHhcCcCCeEEEEEC---CCCCcC
Confidence            455555 589999999999998887    4456679999998763      68999999988999999764   689999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCccCCCCcCCcc--CCCccEEEeccc--cccccCCCceeEEEEEcChhHHHHHHHHHHhc-
Q 021783           78 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPL--ELGADIVMHSAT--KFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-  152 (307)
Q Consensus        78 ~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~--~~~~d~~~~s~~--K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~-  152 (307)
                      |+++|.++|+++|+++|+|++|+.|......  ....|+.++|++  |+++++.   +|+++.+++.+.+.+....... 
T Consensus       121 ~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~~~~~~---gg~~~~~~~~~~~~~~~~~~~~~  197 (352)
T cd00616         121 DMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSFHPTKNLTTGE---GGAVVTNDEELAERARLLRNHGR  197 (352)
T ss_pred             CHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcCCCCCCCcccC---ceEEEECCHHHHHHHHHHHHcCC
Confidence            9999999999999999999999987654322  112588888876  9994433   7888888766655544333221 


Q ss_pred             --------------CCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhc--
Q 021783          153 --------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA--  216 (307)
Q Consensus       153 --------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~--  216 (307)
                                    ...++...+.+....++.+....++..++++.+.+.|+..+++              ++....+  
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~g~--------------~~~~~~~~~  263 (352)
T cd00616         198 DRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKLDEIIARRREIAERYKELLADLPGI--------------RLPDVPPGV  263 (352)
T ss_pred             CCCCCccccceeeeccCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCc--------------cCCCCCCCC
Confidence                          1123344555555555555555666667777777777654432              1111111  


Q ss_pred             cCCCceEEEEeCC--HHHHHHHHhcCCcceeecCCCCccceeecccc----cCCCCCcHHHHHhcCCCCCeEEEEeccCC
Q 021783          217 KGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISMPCF----MSHASIPVEVRQARGLTEDLVRISVGIED  290 (307)
Q Consensus       217 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~----~~~~~~~~~~~~~~~~~~~~iRis~~~~~  290 (307)
                      .....++.|.+++  .....++.+.|..+||.++..........+..    .....++..    ....++.+|++++...
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~~l~l~~~~~~  339 (352)
T cd00616         264 KHSYHLYVIRLDPEAGESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNA----EDLAERVLSLPLHPSL  339 (352)
T ss_pred             ceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHH----HHHHhCeEEccCCCCC
Confidence            1134577777763  34478888888888885543211000000000    000011111    1112367999999988


Q ss_pred             hHHHHHHHHHHHh
Q 021783          291 VNDLISDLDKALR  303 (307)
Q Consensus       291 ~~~~i~~l~~~l~  303 (307)
                      .++.++.+.++|+
T Consensus       340 t~~di~~i~~~l~  352 (352)
T cd00616         340 TEEEIDRVIEALR  352 (352)
T ss_pred             CHHHHHHHHHHhC
Confidence            8888888887764

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.90  E-value=5.9e-22  Score=171.89  Aligned_cols=137  Identities=20%  Similarity=0.287  Sum_probs=107.9

Q ss_pred             cHH-HHHHHhcCCCC---------------eEEEcCCCCcchHHHHhhhcccCCcEEEEecCC---ChHHHHhhcCCCce
Q 021783            2 AAL-AAVTHLLGTGE---------------EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---DLDEVASAIGPWTK   62 (307)
Q Consensus         2 aal-~~~~~~~~~gd---------------~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---d~~~l~~~l~~~~~   62 (307)
                      +|+ .++.+++++||               +|+++.|.|..+...+...+...|+++++++.+   |+++++++++++|+
T Consensus        71 ~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~~~~d~~~le~ai~~~t~  150 (363)
T TIGR01437        71 AGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYANECSAEQLEAAITEKTA  150 (363)
T ss_pred             HHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCCCCCCHHHHHHhcChhce
Confidence            345 56667788888               999988766544323335667789999998763   89999999999999


Q ss_pred             EEE-EeCCCCCccccccHHHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhH
Q 021783           63 LVW-VESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        63 ~v~-~~~~~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~  141 (307)
                      +++ +++++||+|.+.|+++|.++|++||+++++|++|+... .....+|+|++++|+||++.||.   +|+++.+++.+
T Consensus       151 ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~-~~~~~~g~D~~~~S~~K~l~gp~---~G~l~~~~~~i  226 (363)
T TIGR01437       151 AILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL-QKYYRLGADLVIYSGAKAIEGPT---SGLVLGKKKYI  226 (363)
T ss_pred             EEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch-HHHHHcCCCEEEEeCCcccCCCc---eEEEEEcHHHH
Confidence            766 67889999999999999999999999999999998322 22334578999999999987765   78888875544


Q ss_pred             H
Q 021783          142 A  142 (307)
Q Consensus       142 ~  142 (307)
                      .
T Consensus       227 ~  227 (363)
T TIGR01437       227 E  227 (363)
T ss_pred             H
Confidence            3

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.90  E-value=9.5e-23  Score=171.90  Aligned_cols=123  Identities=21%  Similarity=0.215  Sum_probs=112.8

Q ss_pred             CCCC----eEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHH
Q 021783           12 GTGE----EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKI   82 (307)
Q Consensus        12 ~~gd----~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l   82 (307)
                      ..+|    +|++...+|+.....+.. .+..|++++++|.+     |.+.+++.++++|+++.+.+++|.+|+..|++||
T Consensus       125 ~~~~~~~k~iitl~~eH~~v~~s~~~-l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI  203 (428)
T KOG1549|consen  125 FFGDKTKKHIITLQTEHPCVLDSCRA-LQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEI  203 (428)
T ss_pred             cccccccceEEEecccCcchhHHHHH-HHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHH
Confidence            3466    999999999888777654 56778999999984     8899999999999999999999999999999999


Q ss_pred             HHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcC
Q 021783           83 AEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKG  138 (307)
Q Consensus        83 ~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~  138 (307)
                      ..+|+++++.+++|+||+.|..+ ++.++++|+++.|.|||| ||+|  +|++++++
T Consensus       204 ~~icr~~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~HK~y-gp~~--iGaLYvr~  257 (428)
T KOG1549|consen  204 VKICREEGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIY-GPPG--IGALYVRR  257 (428)
T ss_pred             HHHhCcCCcEEEeehhhhcCCccccHHHcCchheeeeccccc-CCCc--ceEEEEcc
Confidence            99999999999999999999998 999999999999999999 6778  99999996

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=99.89  E-value=1.5e-21  Score=160.23  Aligned_cols=257  Identities=17%  Similarity=0.110  Sum_probs=171.2

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      || .++.++-+||.+||++.|+|+-+.    ..+...|.+++.++..       |++.++..++++|.++++.+|+||+|
T Consensus       138 AIe~~i~~LA~p~aNILlPrPGfp~Y~----~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcG  213 (447)
T KOG0259|consen  138 AIELAISSLANPGANILLPRPGFPLYD----TRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCG  213 (447)
T ss_pred             HHHHHHHHhcCCCCceecCCCCCchHH----HhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCc
Confidence            45 455667899999999999998887    7789999999999872       89999999999999999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-----CccCC---CccEEEeccccccccCCCceeEEEEEcChhHH-
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLEL---GADIVMHSATKFIAGHSDVMAGVLAVKGERLA-  142 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~~~~---~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~-  142 (307)
                      .+++   +++|+++|+++++.+|.|++|....+.     .+..+   =..+.++|.||.. -.+|-|.||++..+..-. 
T Consensus       214 nVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW-~VPGWRlGWi~~hD~~gvf  292 (447)
T KOG0259|consen  214 NVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRW-IVPGWRLGWIALHDPRGVF  292 (447)
T ss_pred             ccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeeccccccc-ccCCceeeeEEEecccccc
Confidence            9996   999999999999999999999743321     22222   2478999999977 467999999999865311 


Q ss_pred             ---HHHHHHHHhcCCC--CChhhHHHHhhcc-----ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHH
Q 021783          143 ---KELYFLQNAEGSG--LAPFDCWICLRGV-----KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  212 (307)
Q Consensus       143 ---~~~~~~~~~~~~~--~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~  212 (307)
                         ..+..+.....-.  +....+.+.-.-|     +.+.....-+..+++-..++|+..+              .+..+
T Consensus       293 ~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP--------------~l~cp  358 (447)
T KOG0259|consen  293 RDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIP--------------CLTCP  358 (447)
T ss_pred             cchHHHHHHHHHHhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCC--------------CcccC
Confidence               1112222222211  1112222111111     2344455556666666666666554              33222


Q ss_pred             hhhccCCCceEEEEe-----CCHHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEe
Q 021783          213 YSQAKGAGSVLSFLT-----GSLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  286 (307)
Q Consensus       213 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~  286 (307)
                      .++.  ...++++.+     .+.++...|.+.| +++.+-.-+|..|.                       -++|+|+++
T Consensus       359 ~kPe--g~mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~-----------------------~~nw~Ri~i  413 (447)
T KOG0259|consen  359 VKPE--GCMYLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFG-----------------------LKNWLRIVI  413 (447)
T ss_pred             cCCC--cceEEEeccchhhhccccccHHHHHHHhhhcceEEecccccc-----------------------CCCeEEEEE
Confidence            2222  233444443     2333344444443 56667666766533                       278999999


Q ss_pred             cc--CChHHHHHHHHHHHh
Q 021783          287 GI--EDVNDLISDLDKALR  303 (307)
Q Consensus       287 ~~--~~~~~~i~~l~~~l~  303 (307)
                      +.  +.+++..++|+++.+
T Consensus       414 ~~~~~~leea~~Rik~Fc~  432 (447)
T KOG0259|consen  414 TVEEEMLEEAFSRIKEFCD  432 (447)
T ss_pred             ccChHHHHHHHHHHHHHHH
Confidence            86  567777777777654

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.89  E-value=3.5e-21  Score=168.77  Aligned_cols=273  Identities=18%  Similarity=0.200  Sum_probs=174.2

Q ss_pred             cHH-HHHHHh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcC----CCceEEEEeCC
Q 021783            2 AAL-AAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIG----PWTKLVWVESP   69 (307)
Q Consensus         2 aal-~~~~~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~----~~~~~v~~~~~   69 (307)
                      .|+ .++.++ +++||+|++++++|.++.    ..+...|+++++++.+      |++++++.++    +++++|+++  
T Consensus        55 ~al~~~l~al~~~~Gd~Viv~~~~~~~~~----~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~~--  128 (380)
T TIGR03588        55 SALHIACLALGVGPGDRVWTTPITFVATA----NCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPV--  128 (380)
T ss_pred             HHHHHHHHHcCCCCCCEEEeCCcchHHHH----HHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEEe--
Confidence            355 344556 789999999999998887    5567889999999873      7899999998    789988864  


Q ss_pred             CCCccccccHHHHHHHHHHcCCEEEEeCccCCCCcCCccCCCc----cEEEeccc--cccccCCCceeEEEEEcChhHHH
Q 021783           70 TNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA----DIVMHSAT--KFIAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        70 ~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~----d~~~~s~~--K~~~g~~g~~~G~~~~~~~~~~~  143 (307)
                       |++|...++++|.++|++||+++|+|++|+.|...+....|.    |+.++|+|  |++..+ .  +|+++.+++.+.+
T Consensus       129 -~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~~~~d~~~~S~~~~K~~~~~-~--GG~v~~~~~~~~~  204 (380)
T TIGR03588       129 -DFAGKSVDMQAIAALAKKHGLKIIEDASHALGAEYGGKPVGNCRYADATVFSFHPVKIITTA-E--GGAVTTNDEELAE  204 (380)
T ss_pred             -CCCCccCCHHHHHHHHHHcCCEEEEECCCcccCccCCEeCCCccccceEEEecCCCCccccc-C--ceEEEECCHHHHH
Confidence             468999999999999999999999999999886544444455    99999997  888543 3  7888888887776


Q ss_pred             HHHHHHHhc-------------------------CCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEE
Q 021783          144 ELYFLQNAE-------------------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKV  198 (307)
Q Consensus       144 ~~~~~~~~~-------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  198 (307)
                      .+.......                         ...++...+.+....++.+....++..++++.+.+.|+..+.+.  
T Consensus       205 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l~~~~~~r~~~~~~~~~~L~~~~~~~--  282 (380)
T TIGR03588       205 RMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKLDRFVAKRREIAARYDRLLKDLPYFT--  282 (380)
T ss_pred             HHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc--
Confidence            655443211                         01223344455555566666666666777777777776554221  


Q ss_pred             ecCCCCCCCchHHHhhhccC--CCceEEEEeCC--HHHHHHHHhcCCcceeecCCCCccceeecccccC---CCCCcHHH
Q 021783          199 NYAGLPEHPGHELHYSQAKG--AGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISMPCFMS---HASIPVEV  271 (307)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~---~~~~~~~~  271 (307)
                                  ....+...  ....+.+.+..  ....+.+.+.|..+||.++.... .+...|....   ...++...
T Consensus       283 ------------~~~~~~~~~~~~~~~~i~~~~~~~~~r~~l~~~L~~~gI~~~~~~~-~~~~~~~~~~~~~~~~~p~a~  349 (380)
T TIGR03588       283 ------------PLTIPLGSKSAWHLYPILLDQEFGCTRKEVFEALRAAGIGVQVHYI-PVHLQPYYRQGFGDGDLPSAE  349 (380)
T ss_pred             ------------CCCCCCCCEeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCcccCCc-ccccChhhhccCCcCCCcHHH
Confidence                        01000000  01222333332  12478888889889998875432 2222222111   11122221


Q ss_pred             HHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 021783          272 RQARGLTEDLVRISVGIEDVNDLISDLDKALR  303 (307)
Q Consensus       272 ~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  303 (307)
                      .    ..++.+++.++..-.++.++.+.++++
T Consensus       350 ~----~~~~~l~lP~~~~l~~~dv~~i~~~l~  377 (380)
T TIGR03588       350 N----FYLAEISLPLHPALTLEQQQRVVETLR  377 (380)
T ss_pred             H----HHhceEEcCCCCCCCHHHHHHHHHHHH
Confidence            1    123669998875334444444444443

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.89  E-value=7.9e-22  Score=154.05  Aligned_cols=253  Identities=18%  Similarity=0.207  Sum_probs=178.5

Q ss_pred             HHHHhcCCC-CeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcC--CCceEEEEeCCCCCccccc
Q 021783            6 AVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG--PWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         6 ~~~~~~~~g-d~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~--~~~~~v~~~~~~n~tG~~~   77 (307)
                      ++.+.+-|| ++|+...|+|+.+.    .-+...+++++.+|.+     +.+.+.+.+.  +.+|++++++|+||||...
T Consensus       102 iiR~~c~PGkeKIl~cPPtysMY~----v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~ds~iK~~F~tSPgNPtg~~i  177 (375)
T KOG0633|consen  102 IIRCVCDPGKEKILDCPPTYSMYV----VDAAINDAEVVKVPLNPDFSLNVDAIAEVLELDSKIKCIFLTSPGNPTGSII  177 (375)
T ss_pred             HHhheecCCccceeecCCcceeEE----EEeecCCceEEEecCCCCccccHHHHHHHHhccccceEEEEcCCCCCCcccc
Confidence            334467888 89999999998777    6678899999999985     7788888876  5899999999999999999


Q ss_pred             cHHHHHHHHHHc-CCEEEEeCccC--CC---CcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH-H
Q 021783           78 DIRKIAEMAHAH-GALLLVDNSIM--SP---VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-N  150 (307)
Q Consensus        78 ~~~~l~~~~~~~-~~~li~D~a~~--~~---~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~-~  150 (307)
                      ..+.|.++.+.. |.++++|+||-  .|   .++...++..-+++.++||.+ |.+|+|.|+.+.+.+ +.+.+..+. +
T Consensus       178 k~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNLivlqTlSKsf-GLAGiRvG~~~~~~~-ia~iln~~KaP  255 (375)
T KOG0633|consen  178 KEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVLQTLSKSF-GLAGIRVGYGAFPLS-IAEILNRAKAP  255 (375)
T ss_pred             cHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCceeehhhhhhhc-CcceeEeecccccHH-HHHHHHhccCC
Confidence            888888887765 78999999994  22   234666788999999999999 889999999998854 444443332 2


Q ss_pred             hcCCCCChhhHHHHhh--ccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC
Q 021783          151 AEGSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  228 (307)
Q Consensus       151 ~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  228 (307)
                      ...+......+..+..  +.+.++...+.+.+...++.+.|...+.+.+        .++        ....+++.+++.
T Consensus       256 YNiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~--------~~g--------g~daNFiLi~v~  319 (375)
T KOG0633|consen  256 YNISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLND--------YPG--------GSDANFILIEVT  319 (375)
T ss_pred             ccccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCccccC--------CCC--------cccccEEEEEEc
Confidence            2322222222222222  4456666666777777777777776543322        211        224567888884


Q ss_pred             CH--HHHHHH-HhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHH
Q 021783          229 SL--ALSKHV-VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKAL  302 (307)
Q Consensus       229 ~~--~~~~~~-~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l  302 (307)
                      +.  .-++.+ .+.+-..|+.|++-+....                      =+|++||++|. ++.+.+++.|++.+
T Consensus       320 ~~~n~~akkly~q~at~~gVvVRfrgse~~----------------------c~G~lRitvGt~EentvL~k~~K~~l  375 (375)
T KOG0633|consen  320 GGDNGMAKKLYKQDATKMGVVVRFRGSEEG----------------------CKGYLRITVGTPEENTVLMKCLKQFL  375 (375)
T ss_pred             CCCcHHHHHHHHHHHHhcceEEEEcCCccc----------------------cceeEEEEcCCcccchHHHHHHHhhC
Confidence            22  224444 4445667999987554221                      16789999997 88888998888764

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.89  E-value=3.1e-21  Score=170.80  Aligned_cols=254  Identities=17%  Similarity=0.143  Sum_probs=164.2

Q ss_pred             HHHHHhc--CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcC----CCceEEEEeCCCCCcccccc
Q 021783            5 AAVTHLL--GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         5 ~~~~~~~--~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~   78 (307)
                      .++..+.  ++++.|+...+.|.+...    .++..|+++..++.+|++++++.++    +++++|++++++|++|.+.|
T Consensus       121 ~ai~~l~~~~~~~~i~~~~~~h~s~~~----~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~  196 (407)
T PRK09064        121 ATLSTLAKLIPDCVIFSDELNHASMIE----GIRRSRCEKHIFRHNDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAP  196 (407)
T ss_pred             HHHHHHhCCCCCCEEEEeCcchHHHHH----HHHHcCCcEEEECCCCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccC
Confidence            3444444  378877777777776653    3455678888888888888888875    46899999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcC-Cc--------cCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLS-RP--------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~-~~--------~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                      +++|.++|++||+++|+|++|+.|.+. ..        .....|++++||||.++ ..   +|+++++++ +.+.+....
T Consensus       197 l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g-~~---GG~~~~~~~-~~~~l~~~~  271 (407)
T PRK09064        197 IAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFG-VM---GGYIAGSAA-LVDAVRSYA  271 (407)
T ss_pred             HHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhh-cc---CceEecCHH-HHHHHHHhC
Confidence            999999999999999999999855421 10        11245899999999994 44   588888754 444443332


Q ss_pred             Hh-c-CCCCChhhHHHHhhccccHH---HHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEE
Q 021783          150 NA-E-GSGLAPFDCWICLRGVKTMA---LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  224 (307)
Q Consensus       150 ~~-~-~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  224 (307)
                      .. . ....++..+..+..+++.+.   ...++..++.+.+.+.|++..         ++-.          ...++++.
T Consensus       272 ~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~~~----------~~~~~iv~  332 (407)
T PRK09064        272 PGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAAG---------IPVM----------PNESHIVP  332 (407)
T ss_pred             ccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC---------CCCC----------CCCCCEEE
Confidence            21 1 22344444444445554332   223455566666666666431         1111          11356777


Q ss_pred             EEeCCHHHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHH
Q 021783          225 FLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLD  299 (307)
Q Consensus       225 ~~~~~~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~  299 (307)
                      +.+++......+.+.|. .+||.++....      |..              ..+.+++|+|++.    +|++++++.|+
T Consensus       333 i~~~~~~~~~~l~~~L~~~~gi~v~~~~~------p~~--------------~~~~~~lRis~~~~~t~edi~~l~~~l~  392 (407)
T PRK09064        333 VMVGDPEKCKKASDMLLEEHGIYVQPINY------PTV--------------PRGTERLRITPTPFHTDEMIDHLVEALV  392 (407)
T ss_pred             EEeCCHHHHHHHHHHHHHhCCEEEeeECC------CCC--------------CCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence            77765445777888775 45898865322      100              0123569999985    66777777777


Q ss_pred             HHHhcCC
Q 021783          300 KALRTGP  306 (307)
Q Consensus       300 ~~l~~~~  306 (307)
                      +++++++
T Consensus       393 ~~~~~~~  399 (407)
T PRK09064        393 EVWARLG  399 (407)
T ss_pred             HHHHHcC
Confidence            7666554

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.89  E-value=2.8e-21  Score=170.69  Aligned_cols=254  Identities=17%  Similarity=0.157  Sum_probs=164.4

Q ss_pred             HHHHHhcC--CCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcC----CCceEEEEeCCCCCcccccc
Q 021783            5 AAVTHLLG--TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         5 ~~~~~~~~--~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~   78 (307)
                      .++..+.+  +|+.|+.+...|.+...    .++..|+++..++.+|++++++.++    +++++|++++++||+|.+.|
T Consensus       120 ~ai~~l~~~~~~~~v~~~~~~h~s~~~----~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~  195 (402)
T TIGR01821       120 ATLATLAKIIPGCVIFSDELNHASMIE----GIRHSGAEKFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAP  195 (402)
T ss_pred             HHHHHhhCCCCCCEEEEcchHhHHHHH----HHHHcCCeEEEECCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC
Confidence            34444443  78888877777866663    3456788887888888888888775    36899999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcC-C----cc----CCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLS-R----PL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~-~----~~----~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                      +++|.++|++||+++|+|++|+.|.+. .    ..    ....|++++|++|.+++ .   +|+++++++ +.+.+....
T Consensus       196 l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~-~---GG~i~~~~~-~~~~l~~~~  270 (402)
T TIGR01821       196 IEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGV-V---GGYIAASRK-LIDAIRSYA  270 (402)
T ss_pred             HHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhcc-C---CceeecCHH-HHHHHHHhC
Confidence            999999999999999999999855431 1    11    12368999999999954 4   588887754 444444322


Q ss_pred             Hh--cCCCCChhhHHHHhhccccH---HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEE
Q 021783          150 NA--EGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  224 (307)
Q Consensus       150 ~~--~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  224 (307)
                      ..  .....++..+..+.++++.+   ....+...++.+.+.+.++...         ++-.          ...++++.
T Consensus       271 ~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~~~----------~~~~~i~~  331 (402)
T TIGR01821       271 PGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEALG---------IPVI----------PNPSHIVP  331 (402)
T ss_pred             cCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHcC---------CCcC----------CCCCCEEE
Confidence            21  12234444455555555433   2223344456666666665431         1111          11356777


Q ss_pred             EEeCCHHHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHH
Q 021783          225 FLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLD  299 (307)
Q Consensus       225 ~~~~~~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~  299 (307)
                      +.+++.+.+..+.+.|. .+||.++....      |..              ..+.+++|+|++.    +|++++++.|+
T Consensus       332 i~~~~~~~a~~~~~~L~~~~Gi~v~~~~~------p~~--------------~~g~~~lRis~~~~~t~edi~~~~~~l~  391 (402)
T TIGR01821       332 VIIGDAALCKKVSDLLLNKHGIYVQPINY------PTV--------------PRGTERLRITPTPAHTDKMIDDLVEALL  391 (402)
T ss_pred             EEeCCHHHHHHHHHHHHhcCCEEEEeECC------CCC--------------CCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence            77765545677888875 45898765332      100              0123579999965    67777777777


Q ss_pred             HHHhcCC
Q 021783          300 KALRTGP  306 (307)
Q Consensus       300 ~~l~~~~  306 (307)
                      +++++++
T Consensus       392 ~~~~~~~  398 (402)
T TIGR01821       392 LVWDRLG  398 (402)
T ss_pred             HHHHHcC
Confidence            7776554

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PLN02368 alanine transaminase

Probab=99.89  E-value=2.9e-21  Score=169.32  Aligned_cols=160  Identities=13%  Similarity=0.114  Sum_probs=118.2

Q ss_pred             HHHHHhc-CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCC------CceEEEEeCCC
Q 021783            5 AAVTHLL-GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGP------WTKLVWVESPT   70 (307)
Q Consensus         5 ~~~~~~~-~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~------~~~~v~~~~~~   70 (307)
                      .++.+++ +|||+|++++|+|+.+.    ..++..|++++.++.+       |++++++.+++      +++++++++|+
T Consensus       145 ~~~~~l~~~pGd~Vli~~P~Y~~y~----~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~  220 (407)
T PLN02368        145 QILNAVIRGEKDGVLVPVPQYPLYS----ATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPG  220 (407)
T ss_pred             HHHHHHcCCCCCEEEEeCCCCccHH----HHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCC
Confidence            3445566 69999999999999988    6677889999998763       68899988863      78999999999


Q ss_pred             CCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCc------CCc-------c----CCCccEEEeccccccccCCCce
Q 021783           71 NPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL------SRP-------L----ELGADIVMHSATKFIAGHSDVM  130 (307)
Q Consensus        71 n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~------~~~-------~----~~~~d~~~~s~~K~~~g~~g~~  130 (307)
                      ||||.+++   +++|+++|++||++||+|++|..-.+      ...       .    ..+..++++||||.+.+.+|+|
T Consensus       221 NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlR  300 (407)
T PLN02368        221 NPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQR  300 (407)
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccc
Confidence            99999996   77888999999999999999964221      110       0    1236799999999986678999


Q ss_pred             eEEEEE--cChhHHHHHHHHHHhcCCCCChhhHHHHhhccc
Q 021783          131 AGVLAV--KGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  169 (307)
Q Consensus       131 ~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  169 (307)
                      +||+++  .++.+.+.+...... ....+...+.++...++
T Consensus       301 iGy~i~~~~~~~li~~~~~~~~~-~~~~~~~~Q~aa~~~l~  340 (407)
T PLN02368        301 GGYFEMTNIPPKTVEEIYKVASI-ALSPNVSGQIFMGLMVN  340 (407)
T ss_pred             eEEEEEeCCCHHHHHHHHHHhcc-cCCCCcHHHHHHHHHhC
Confidence            999995  234454545444322 22344455555555543

>PLN02822 serine palmitoyltransferase

Probab=99.89  E-value=5.8e-21  Score=170.93  Aligned_cols=257  Identities=13%  Similarity=0.147  Sum_probs=167.5

Q ss_pred             HHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcC---------CCc-eEEEEeCCCCCc
Q 021783            4 LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG---------PWT-KLVWVESPTNPR   73 (307)
Q Consensus         4 l~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~---------~~~-~~v~~~~~~n~t   73 (307)
                      .+++.+++++||.|++....|.++.    ..++..|.+++.++++|.++++..+.         +++ ++|+++++++++
T Consensus       183 ~sai~a~~~~gd~Ii~d~~~H~s~~----~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~  258 (481)
T PLN02822        183 FSVIPAFCKKGDIIVADEGVHWGIQ----NGLYLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNS  258 (481)
T ss_pred             HHHHHHhCCCCCEEEEeCCccHHHH----HHHHHcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCC
Confidence            3667778999999999988887765    44566788999999998877776653         234 789999999999


Q ss_pred             cccccHHHHHHHHHHcCCEEEEeCccCCCCcCC----------ccCCCccEEEeccccccccCCCceeEEEEEcChhHHH
Q 021783           74 QQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR----------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        74 G~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~----------~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~  143 (307)
                      |.+.|+++|.++|++||+++|+||+|+.+.+..          ......|++++|++|.+ |..   +|+++++++ +.+
T Consensus       259 G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKal-g~~---GG~i~g~~~-ii~  333 (481)
T PLN02822        259 GQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHAL-ATE---GGFCTGSAR-VVD  333 (481)
T ss_pred             CCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhh-hhC---CeEEEcCHH-HHH
Confidence            999999999999999999999999998665421          11125789999999999 445   589988755 444


Q ss_pred             HHHHHHHhcC--CCCChhhHHHHhhccccH---HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          144 ELYFLQNAEG--SGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       144 ~~~~~~~~~~--~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      .+........  ...++..+..+..+++.+   ....+++.++.+.+.+.|++..++              .+.  . ..
T Consensus       334 ~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~--------------~~~--~-~~  396 (481)
T PLN02822        334 HQRLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDIPGL--------------SIG--S-NT  396 (481)
T ss_pred             HHHhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCc--------------ccC--C-CC
Confidence            4432221111  123344445544455433   234455566666666666543211              110  0 12


Q ss_pred             CCceEEEEeCCH--------HHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-
Q 021783          219 AGSVLSFLTGSL--------ALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-  288 (307)
Q Consensus       219 ~~~~~~~~~~~~--------~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-  288 (307)
                      .++++.+.+++.        ....++.+.|. ++||.+..+....      ..            .+..+..+|++++. 
T Consensus       397 ~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~------~~------------~~~~~~~lRi~is~~  458 (481)
T PLN02822        397 LSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRST------LD------------KCRLPVGIRLFVSAG  458 (481)
T ss_pred             CCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCC------cC------------CCCCCCcEEEEECCC
Confidence            467777777531        22467777775 7799887653200      00            01113459999875 


Q ss_pred             ---CChHHHHHHHHHHHhc
Q 021783          289 ---EDVNDLISDLDKALRT  304 (307)
Q Consensus       289 ---~~~~~~i~~l~~~l~~  304 (307)
                         +++++.++.|++++.+
T Consensus       459 ~t~edI~~~~~~l~~~~~~  477 (481)
T PLN02822        459 HTESDILKASESLKRVAAS  477 (481)
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence               5666666666666554

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.89  E-value=5.2e-21  Score=169.10  Aligned_cols=254  Identities=18%  Similarity=0.189  Sum_probs=166.0

Q ss_pred             HHHHHhcC--CCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcC----CCceEEEEeCCCCCcccccc
Q 021783            5 AAVTHLLG--TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         5 ~~~~~~~~--~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~   78 (307)
                      +++..+.+  +||.|+++...|+++...    ++..|++++.++.+|++++++.+.    +++++|++++++|++|.+.|
T Consensus       120 ~ai~~l~~~~~g~~I~~~~~~H~s~~~~----~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~  195 (406)
T PRK13393        120 AALSTLGSRLPGCVILSDELNHASMIEG----IRHSRAEKRIFRHNDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAP  195 (406)
T ss_pred             HHHHHhhcCCCCCEEEEccchhHHHHHH----HHHcCCeEEEeCCCCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhC
Confidence            44444443  788888888888877744    345688888888888888887764    36789999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcC-Cc--------cCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLS-RP--------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~-~~--------~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                      +++|.++|+++|+++++|++|+.|.+. ..        ...+.|++++|++|.++. .   +|+++++++ +.+.+....
T Consensus       196 l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~-~---GG~~~~~~~-~~~~l~~~~  270 (406)
T PRK13393        196 IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGV-M---GGYITGSAA-LCDFIRSFA  270 (406)
T ss_pred             HHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcc-c---CceeeCCHH-HHHHHHHhC
Confidence            999999999999999999999865532 11        111358899999999954 3   588887644 444444333


Q ss_pred             Hh--cCCCCChhhHHHHhhccccHH---HHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEE
Q 021783          150 NA--EGSGLAPFDCWICLRGVKTMA---LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  224 (307)
Q Consensus       150 ~~--~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  224 (307)
                      ..  .....++..+..+..+++.+.   ...++..++.+.+.+.|+...         ++..          ++.++++.
T Consensus       271 ~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~~~----------~~~~~i~~  331 (406)
T PRK13393        271 SGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKAG---------IPHL----------PNPSHIVP  331 (406)
T ss_pred             cCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcC---------CCcC----------CCCCCeEE
Confidence            22  123344444445445554332   122334455566666665421         1111          12366777


Q ss_pred             EEeCCHHHHHHHHhcCCc-ceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHH
Q 021783          225 FLTGSLALSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLD  299 (307)
Q Consensus       225 ~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~  299 (307)
                      +.+.+......+.+.|.+ +||.++.+..      |..              ..+.+++|+|++.    +|++++++.|.
T Consensus       332 v~~~~~~~~~~l~~~L~~~~Gi~v~~~~~------p~~--------------p~g~~~iRis~~~~~t~edid~l~~~l~  391 (406)
T PRK13393        332 VMVGDPVLCKQISDELLDRYGIYVQPINY------PTV--------------PRGTERLRITPSPLHTDADIEHLVQALS  391 (406)
T ss_pred             EEeCCHHHHHHHHHHHHHhCCEEEEeECC------CCC--------------CCCCceEEEEECCCCCHHHHHHHHHHHH
Confidence            766654456788888876 5998876432      110              0123579999975    67777777777


Q ss_pred             HHHhcCC
Q 021783          300 KALRTGP  306 (307)
Q Consensus       300 ~~l~~~~  306 (307)
                      +.+++++
T Consensus       392 ~~~~~~~  398 (406)
T PRK13393        392 EIWARLG  398 (406)
T ss_pred             HHHHhcC
Confidence            7766554

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.89  E-value=4.1e-21  Score=168.18  Aligned_cols=238  Identities=18%  Similarity=0.121  Sum_probs=155.5

Q ss_pred             CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHH
Q 021783           12 GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA   86 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~   86 (307)
                      ++||+|++++++|++..    ..++..|++++.++.+     |++++++++++++++|++++++|+||.+.|+++|.++|
T Consensus       102 ~~~~~vl~~~~~h~s~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~l~~I~~l~  177 (371)
T PRK13520        102 AEKPNIVVPESAHFSFD----KAADMLGVELRRAPLDDDYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELSKIA  177 (371)
T ss_pred             CCCceEEecCcchHHHH----HHHHHcCceEEEecCCCCCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHH
Confidence            36899999999997765    5667789999998863     89999999988888888888899999999999999999


Q ss_pred             HHcCCEEEEeCccCCCCcC--------CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhc------
Q 021783           87 HAHGALLLVDNSIMSPVLS--------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE------  152 (307)
Q Consensus        87 ~~~~~~li~D~a~~~~~~~--------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~------  152 (307)
                      +++|+++++|++|+.+..+        +....++|.+++|++||..++.+  +|+++.+++...+.+.......      
T Consensus       178 ~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~--~G~~~~~~~~~~~~l~~~~~~~~~~~~~  255 (371)
T PRK13520        178 LENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIP--AGGILFRDESYLDALAVDTPYLTSKKQA  255 (371)
T ss_pred             HHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCC--ceEEEEcCHHHHHhhcccCccccCCCCc
Confidence            9999999999999854321        11235789999999998754433  7777776554444332111110      


Q ss_pred             --CCCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEE
Q 021783          153 --GSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  225 (307)
Q Consensus       153 --~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  225 (307)
                        .++.+......+..+++     .++...++..++++.+.+.+++. ++ .....                ...+++.+
T Consensus       256 ~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~----------------~~~~~v~~  317 (371)
T PRK13520        256 TLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER-GF-EPVIE----------------PVLNIVAF  317 (371)
T ss_pred             ceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC-CC-EEecC----------------CCceEEEE
Confidence              00111222222333332     23344556666666777766643 22 11110                02457777


Q ss_pred             EeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHH
Q 021783          226 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKA  301 (307)
Q Consensus       226 ~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~  301 (307)
                      .+++   ..++.+.|..+||.++.+..                          .+++|+|++.    +|++++++.|++.
T Consensus       318 ~~~~---~~~v~~~L~~~gi~v~~~~~--------------------------~~~iRis~~~~~t~edi~~~~~~l~~~  368 (371)
T PRK13520        318 DDPN---PDEVREKLRERGWRVSVTRC--------------------------PEALRIVCMPHVTREHIENFLEDLKEV  368 (371)
T ss_pred             ecCC---HHHHHHHHHHCCceeccCCC--------------------------CCEEEEEEECCCCHHHHHHHHHHHHHH
Confidence            7662   56777777777887765321                          3459999975    4555555555444


Q ss_pred             H
Q 021783          302 L  302 (307)
Q Consensus       302 l  302 (307)
                      +
T Consensus       369 ~  369 (371)
T PRK13520        369 K  369 (371)
T ss_pred             h
Confidence            3

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.89  E-value=1.6e-20  Score=164.00  Aligned_cols=269  Identities=14%  Similarity=0.147  Sum_probs=168.6

Q ss_pred             hcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHH
Q 021783           10 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA   83 (307)
Q Consensus        10 ~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~   83 (307)
                      .+++||+|+++.++|+++.    ..+...|++++.++.+      |++++++.+++++++|+++|   ++|...++++|.
T Consensus        67 ~~~~Gd~Viv~~~t~~~~~----~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~~tk~i~~~~---~~G~~~~~~~i~  139 (375)
T PRK11706         67 DIQPGDEVIMPSYTFVSTA----NAFVLRGAKIVFVDIRPDTMNIDETLIEAAITPKTRAIVPVH---YAGVACEMDTIM  139 (375)
T ss_pred             CCCCCCEEEECCCCcHHHH----HHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCCCCeEEEEeC---CCCCccCHHHHH
Confidence            3689999999999999888    5567789999999863      68999999998999999764   689999999999


Q ss_pred             HHHHHcCCEEEEeCccCCCCcCCcc--CCCccEEEeccc--cccccCCCceeEEEEEcChhHHHHHHHHHHhc-------
Q 021783           84 EMAHAHGALLLVDNSIMSPVLSRPL--ELGADIVMHSAT--KFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-------  152 (307)
Q Consensus        84 ~~~~~~~~~li~D~a~~~~~~~~~~--~~~~d~~~~s~~--K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~-------  152 (307)
                      ++|+++|+++|+|++|+.+...+..  ....|+.++||+  |.+. ++.  +|+++++++.+.+.+.......       
T Consensus       140 ~la~~~~i~vIeD~a~a~g~~~~~~~~g~~~~~~~~Sf~~~K~l~-~g~--gG~~~~~~~~~~~~~~~~~~~g~~~~~~~  216 (375)
T PRK11706        140 ALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYT-AGE--GGALLINDPALIERAEIIREKGTNRSQFF  216 (375)
T ss_pred             HHHHHcCCEEEEECccccccccCCeeeecCcCEEEEeCCCCcccc-ccC--CeEEEECCHHHHHHHHHHHHcCCCcchhh
Confidence            9999999999999999987632222  222478888887  9984 333  5666677676766555444321       


Q ss_pred             ------------C--CCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          153 ------------G--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       153 ------------~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                                  +  ..+....+.+....++.++...++..++++.+.+.|...+....+..+....  +       ...
T Consensus       217 ~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~--~-------~~~  287 (375)
T PRK11706        217 RGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAADRINQRRLALWQRYYDALAPLAEAGRIELPSIPD--D-------CKH  287 (375)
T ss_pred             ccCCCcceeeecccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCC--C-------Cce
Confidence                        1  1123345555555566665555556666666666665443110111111100  0       001


Q ss_pred             CCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccC----CCCCcHHHHHhcCCCCCeEEEEecc----CC
Q 021783          219 AGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS----HASIPVEVRQARGLTEDLVRISVGI----ED  290 (307)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~iRis~~~----~~  290 (307)
                      ...++++.+++.....++.+.|..+||.++.... .+...|....    ...+|.....    .++.+-+.++.    +|
T Consensus       288 ~~~~~~~~~~~~~~r~~l~~~L~~~gI~~~~~~~-p~~~~~~~~~~~~~~~~~p~a~~~----~~~~l~lP~~~~l~~~~  362 (375)
T PRK11706        288 NAHMFYIKLRDLEDRSALINFLKEAGIMAVFHYI-PLHSSPAGERFGRFHGEDRYTTKE----SERLLRLPLFYNLTDVE  362 (375)
T ss_pred             eeEEEEEEECCcCCHHHHHHHHHHCCCCccccCC-ccCcchhhHhcCCCCCCChHHHHH----HhCcEeccCCCCCCHHH
Confidence            1335556665444588999999999998875432 2222222111    1123333222    23446665543    56


Q ss_pred             hHHHHHHHHHHH
Q 021783          291 VNDLISDLDKAL  302 (307)
Q Consensus       291 ~~~~i~~l~~~l  302 (307)
                      ++++++.+++++
T Consensus       363 ~~~i~~~i~~~~  374 (375)
T PRK11706        363 QRTVIDTILEFF  374 (375)
T ss_pred             HHHHHHHHHHHh
Confidence            666666666543

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.89  E-value=6.4e-21  Score=168.46  Aligned_cols=131  Identities=24%  Similarity=0.270  Sum_probs=108.0

Q ss_pred             HhcCC--CCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccH-H
Q 021783            9 HLLGT--GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDI-R   80 (307)
Q Consensus         9 ~~~~~--gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~-~   80 (307)
                      +.+.+  ||+|+++++.|+++...+....+..|++++.++.+     |++++++++.+++++|++++++ ++|.+.+. +
T Consensus       101 ~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~t~~viv~~~~-~~G~~~~~l~  179 (398)
T cd00613         101 AIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEVAALMVQYPN-TLGVFEDLIK  179 (398)
T ss_pred             HHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCCCeEEEEEECCC-CCceecchHH
Confidence            34565  99999999999999877766556667999988874     6799999999899999999985 89999885 9


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCC---CceeEEEEEcChhH
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHS---DVMAGVLAVKGERL  141 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~---g~~~G~~~~~~~~~  141 (307)
                      +|.++|++||+++|+|++|+.+... ....+++|++++|+||++ +|.   |-++|+++.+++..
T Consensus       180 ~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~~~~~~  243 (398)
T cd00613         180 EIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTG-VPHGGGGPGAGFFAVKKELV  243 (398)
T ss_pred             HHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEEeeccccC-CCCCCCCCceeEEEEhhhhH
Confidence            9999999999999999998765543 556678999999999998 442   33489999986543

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.88  E-value=2.4e-22  Score=174.26  Aligned_cols=225  Identities=17%  Similarity=0.145  Sum_probs=156.6

Q ss_pred             CCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCC------CceEEEEeCCCCCccccccHHHH
Q 021783           14 GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP------WTKLVWVESPTNPRQQICDIRKI   82 (307)
Q Consensus        14 gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~~~~l   82 (307)
                      +++|++++++|.++.    ..++..|++++.++.+     |++++++.+.+      +++++++++++||||.+.|+++|
T Consensus        95 ~~~v~~~~~~h~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i  170 (345)
T cd06450          95 KLVIVCSDQAHVSVE----KAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEI  170 (345)
T ss_pred             CeEEEEcCcchhHHH----HHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHH
Confidence            348899999998876    4455568899888853     78999999876      78899999999999999999999


Q ss_pred             HHHHHHcCCEEEEeCccCCCCcCCc-------cCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCC
Q 021783           83 AEMAHAHGALLLVDNSIMSPVLSRP-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  155 (307)
Q Consensus        83 ~~~~~~~~~~li~D~a~~~~~~~~~-------~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~  155 (307)
                      .++|+++|+++++|++|+.+..+..       ...++|++++|+||++++|.|  +|+++.+                  
T Consensus       171 ~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g--~g~~~~~------------------  230 (345)
T cd06450         171 ADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLG--CSAVLVR------------------  230 (345)
T ss_pred             HHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcc--hHHHHHH------------------
Confidence            9999999999999999987664311       112689999999999877766  7887766                  


Q ss_pred             CChhhHHHHhhcc--ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC----
Q 021783          156 LAPFDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS----  229 (307)
Q Consensus       156 ~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----  229 (307)
                        ....+.....+  ..++.+.++..+.++.+.+.+++.+.+. +..                ....+++.|.+.+    
T Consensus       231 --~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~----------------~~~~~iv~f~~~~~~~~  291 (345)
T cd06450         231 --ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFE-LLG----------------EPNLSLVCFRLKPSVKL  291 (345)
T ss_pred             --HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeE-Eec----------------CCceeEEEEEECCcchh
Confidence              11122222111  2334555666677777777777654331 110                0135688888865    


Q ss_pred             HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccC-ChHHHHHHHHHHHhc
Q 021783          230 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE-DVNDLISDLDKALRT  304 (307)
Q Consensus       230 ~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~-~~~~~i~~l~~~l~~  304 (307)
                      .....++.+.|.++|+.+..+..+                      + .++++|+|++.. +.++.++.|.++|++
T Consensus       292 ~~~~~~i~~~L~~~g~~~~~~~~~----------------------~-~~~~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         292 DELNYDLSDRLNERGGWHVPATTL----------------------G-GPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             hHHHHHHHHHHHhcCCEEEEeeEE----------------------C-CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence            233667888887775533222110                      0 245699999875 477778888777764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.88  E-value=9.8e-21  Score=167.45  Aligned_cols=260  Identities=21%  Similarity=0.219  Sum_probs=162.6

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHh-hhcccCCcEEEEecC--C------ChHHHHhhcC-CCceEEEEeCCCCCcc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLS-RVTPKTGVVVKRVNT--C------DLDEVASAIG-PWTKLVWVESPTNPRQ   74 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~-~~~~~~g~~~~~v~~--~------d~~~l~~~l~-~~~~~v~~~~~~n~tG   74 (307)
                      .++.++++|||+|++++|+|+++...+. ..++..|.+++.++.  +      |++++++.+. ++++++++++++|  |
T Consensus        96 ~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~--~  173 (402)
T cd00378          96 AVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAY--P  173 (402)
T ss_pred             HHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCccc--C
Confidence            5566788999999999999977653211 125567876655543  2      8999999985 6899999888776  4


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCccCCCCc-----CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           75 QICDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        75 ~~~~~~~l~~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                      ...|+++|.++|+++|+++|+|++|..+..     ..... +.|++++|+||++.|++   +|+++++++.+.+.+....
T Consensus       174 ~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~-~~dv~~~s~sK~l~G~~---gg~i~~~~~~~~~~l~~~~  249 (402)
T cd00378         174 RPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP-GADVVTTTTHKTLRGPR---GGLILTRKGELAKKINSAV  249 (402)
T ss_pred             CCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc-CCcEEEeccccCCCCCC---ceEEEeccHHHHHHHHHHh
Confidence            667999999999999999999999865432     22223 67999999999996554   7888888745555554433


Q ss_pred             Hhc-CCCCChhhHHH-H---hhccc-cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceE
Q 021783          150 NAE-GSGLAPFDCWI-C---LRGVK-TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  223 (307)
Q Consensus       150 ~~~-~~~~~~~~~~~-~---~~~l~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  223 (307)
                      ... .+......... .   ....+ ....+.+++.++.+.+.+.|++. ++ .+..              . ...++++
T Consensus       250 ~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~--------------~-~~~~~~v  312 (402)
T cd00378         250 FPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER-GF-KVVS--------------G-GTDNHLV  312 (402)
T ss_pred             CccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC-CC-eEee--------------c-CCCCeEE
Confidence            211 11111111111 1   11112 33445566677777777777654 22 1100              0 1136677


Q ss_pred             EEEeCC-HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--------CChHHH
Q 021783          224 SFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--------EDVNDL  294 (307)
Q Consensus       224 ~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--------~~~~~~  294 (307)
                      ++.+++ ......+.+.+...||.+..+..      |....           .....+++|++++.        +|++++
T Consensus       313 ~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~------p~~~~-----------~~~~~~~lRi~~~~~~~~~~~~~di~~~  375 (402)
T cd00378         313 LVDLRPKGITGKAAEDALEEAGITVNKNTL------PWDPS-----------SPFVPSGIRIGTPAMTTRGMGEEEMEEI  375 (402)
T ss_pred             EEeCCccCCCHHHHHHHHHHcCcEEcCCcC------CCCCC-----------CCCCCCeeEecCHHHHHhCCCHHHHHHH
Confidence            777752 11245666667778998876332      10000           01124579998853        677777


Q ss_pred             HHHHHHHHhc
Q 021783          295 ISDLDKALRT  304 (307)
Q Consensus       295 i~~l~~~l~~  304 (307)
                      ++.|.+.++.
T Consensus       376 ~~~l~~~~~~  385 (402)
T cd00378         376 ADFIARALKD  385 (402)
T ss_pred             HHHHHHHHhc
Confidence            8877776643

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.88  E-value=5.8e-21  Score=167.33  Aligned_cols=240  Identities=16%  Similarity=0.077  Sum_probs=156.2

Q ss_pred             CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHH
Q 021783           12 GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA   86 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~   86 (307)
                      ++||+|++++++|.++.    ..++..|++++.++.+     |++++++.+++++..+++.+++||||...|+++|.++|
T Consensus       104 ~~g~~vl~~~~~h~~~~----~~~~~~G~~~~~v~~~~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~  179 (373)
T TIGR03812       104 KRTPNIIVPESAHFSFE----KAAEMLGLELRYAPLDEDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIA  179 (373)
T ss_pred             CCCcEEEECCcchHHHH----HHHHHcCCeEEEEeeCCCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCCHHHHHHHH
Confidence            47799999999998765    5677889999999863     89999999987775555555789999999999999999


Q ss_pred             HHcCCEEEEeCccCCCCc----------C-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCC-
Q 021783           87 HAHGALLLVDNSIMSPVL----------S-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS-  154 (307)
Q Consensus        87 ~~~~~~li~D~a~~~~~~----------~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~-  154 (307)
                      +++|+++|+|++|+.+..          . +....+.|.+++|+|||..++.+  +|+++..++...+.+.....+... 
T Consensus       180 ~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~--~G~~~~~~~~~~~~l~~~~~~~~~~  257 (373)
T TIGR03812       180 LENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIP--AGGILFRSKSYLKYLSVDAPYLTVK  257 (373)
T ss_pred             HHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCC--ceEEEEeCHHHHhhhcccCcccCCC
Confidence            999999999999974432          1 22224789999999997544433  555554434443333211111110 


Q ss_pred             -------CCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCce
Q 021783          155 -------GLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV  222 (307)
Q Consensus       155 -------~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  222 (307)
                             +.+......+...++     .++...++..++++.+.+.|++.... .+ .+                ...++
T Consensus       258 ~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~-~~-~~----------------~~~~~  319 (373)
T TIGR03812       258 KQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIGFE-PV-IE----------------PVLNI  319 (373)
T ss_pred             CCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCe-EE-cC----------------CCceE
Confidence                   111122222222332     22334566666777777777654210 01 11                12457


Q ss_pred             EEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHH
Q 021783          223 LSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  302 (307)
Q Consensus       223 ~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l  302 (307)
                      +.+.+++   ...+.+.|..+||.++.+.                          .++++|+|++....++.++.|.++|
T Consensus       320 v~~~~~~---~~~v~~~L~~~gi~v~~~~--------------------------~~~~iRis~~~~~t~edid~l~~~L  370 (373)
T TIGR03812       320 VAFEVDD---PEEVRKKLRDRGWYVSVTR--------------------------CPKALRIVVMPHVTREHIEEFLEDL  370 (373)
T ss_pred             EEEEeCC---HHHHHHHHHHCCceeccCC--------------------------CCCEEEEEEECCCCHHHHHHHHHHH
Confidence            7777664   3467777777888776532                          1346999998777777777777777


Q ss_pred             hc
Q 021783          303 RT  304 (307)
Q Consensus       303 ~~  304 (307)
                      ++
T Consensus       371 ~~  372 (373)
T TIGR03812       371 KE  372 (373)
T ss_pred             hh
Confidence            64

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.88  E-value=1.6e-20  Score=164.10  Aligned_cols=274  Identities=18%  Similarity=0.192  Sum_probs=168.9

Q ss_pred             cHH-HHHHHh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCc
Q 021783            2 AAL-AAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPR   73 (307)
Q Consensus         2 aal-~~~~~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~t   73 (307)
                      +|+ .++.++ +++||+|++++++|+++.    ..+...|++++.+|.+      |++++++.++++|++|+   ++|++
T Consensus        59 ~al~lal~al~~~~Gd~Viv~~~~~~~~~----~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~~tkav~---~~~~~  131 (379)
T PRK11658         59 AGMHITLMALGIGPGDEVITPSLTWVSTL----NMIVLLGATPVMVDVDRDTLMVTPEAIEAAITPRTKAII---PVHYA  131 (379)
T ss_pred             HHHHHHHHHcCCCCCCEEEECCCcHHHHH----HHHHHcCCEEEEEecCCCcCCcCHHHHHHhcccCCeEEE---EeCCC
Confidence            455 455556 789999999999999887    4556789999999863      78999999999999987   45679


Q ss_pred             cccccHHHHHHHHHHcCCEEEEeCccCCCCcC---CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHH
Q 021783           74 QQICDIRKIAEMAHAHGALLLVDNSIMSPVLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  150 (307)
Q Consensus        74 G~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~---~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~  150 (307)
                      |...|+++|.++|+++|+++|+|++|+.|...   ....+|.++++++.+|.+.+.   .+|+++++++.+.+.+.....
T Consensus       132 G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g---~GG~v~~~~~~~~~~~~~~~~  208 (379)
T PRK11658        132 GAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIKNITCA---EGGLVVTDDDELADRLRSLKF  208 (379)
T ss_pred             CCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCCCCEEEeCCCCCcCccc---CceEEEECCHHHHHHHHHHHH
Confidence            99999999999999999999999999987654   244556666677777877543   378888887777665554332


Q ss_pred             hc----------------------C--CCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCC
Q 021783          151 AE----------------------G--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH  206 (307)
Q Consensus       151 ~~----------------------~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~  206 (307)
                      ..                      |  ..++.+.+.+....++.++...++..++++.+.+.|+..+.. .+..+.   .
T Consensus       209 ~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~~~~~-~~~~~~---~  284 (379)
T PRK11658        209 HGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLEALNARRREIAARYLQALADLPFQ-PLSLPA---W  284 (379)
T ss_pred             cCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-cCcCCC---C
Confidence            11                      1  112334455555555555555555555555555655543210 000000   0


Q ss_pred             CchHHHhhhccCCCceEEEEeCCH---HHHHHHHhcCCcceeecCCCCccceeecccccC---CCCCcHHHHHhcCCCCC
Q 021783          207 PGHELHYSQAKGAGSVLSFLTGSL---ALSKHVVETTKYFSITVSFGSVKSLISMPCFMS---HASIPVEVRQARGLTED  280 (307)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~  280 (307)
                              .......++.+.++..   ...+.+.+.|+.+||.++.... .....|....   ...+|.....    .+.
T Consensus       285 --------~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~gI~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~----~~~  351 (379)
T PRK11658        285 --------PHQHAWHLFIIRVDEERCGISRDALMEALKERGIGTGLHFR-AAHTQKYYRERFPTLSLPNTEWN----SER  351 (379)
T ss_pred             --------CCceeEEEEEEEECCccccCCHHHHHHHHHHCCCCCcccCc-CcccChhhhccCCCCCChHHHHH----HhC
Confidence                    0000113445555421   2377888889889997654321 2222332111   1122222111    234


Q ss_pred             eEEEEecc----CChHHHHHHHHHHH
Q 021783          281 LVRISVGI----EDVNDLISDLDKAL  302 (307)
Q Consensus       281 ~iRis~~~----~~~~~~i~~l~~~l  302 (307)
                      .+-+.++.    ++++++++.+++++
T Consensus       352 ~l~lP~~~~l~~~~~~~i~~~i~~~~  377 (379)
T PRK11658        352 ICSLPLFPDMTDADVDRVITALQQIA  377 (379)
T ss_pred             eEEccCCCCCCHHHHHHHHHHHHHHH
Confidence            46666653    56666666666554

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.88  E-value=1.8e-20  Score=156.39  Aligned_cols=269  Identities=16%  Similarity=0.146  Sum_probs=167.7

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcC---------CCceEEEEe-CCC
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIG---------PWTKLVWVE-SPT   70 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~---------~~~~~v~~~-~~~   70 (307)
                      -++..+++.||.|++..++|++..    +..+..|++++.|+++    ++|.|++.+.         +++++++.- ..+
T Consensus       139 ~~l~~~~N~gd~vlie~~ty~~AL----~s~~a~gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgq  214 (472)
T KOG0634|consen  139 KVLRTLINRGDHVLIEEYTYPSAL----QSMEALGVKIIPVKMDQDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQ  214 (472)
T ss_pred             HHHHHhhcCCCceEEecccchHHH----HhccccCceEEeccccCCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCC
Confidence            355568999999999999998888    7788999999999986    7888887775         236666644 789


Q ss_pred             CCcccccc---HHHHHHHHHHcCCEEEEeCccCC---------------------------CCcCCccCCCccEEEeccc
Q 021783           71 NPRQQICD---IRKIAEMAHAHGALLLVDNSIMS---------------------------PVLSRPLELGADIVMHSAT  120 (307)
Q Consensus        71 n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~---------------------------~~~~~~~~~~~d~~~~s~~  120 (307)
                      ||||..++   .++|.++|++|++++|+|+.|..                           +.+...+..|.++-..|||
T Consensus       215 NPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFS  294 (472)
T KOG0634|consen  215 NPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFS  294 (472)
T ss_pred             CCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchh
Confidence            99999986   78999999999999999999841                           0111333457889999999


Q ss_pred             cccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCc-cEEe
Q 021783          121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRV-KKVN  199 (307)
Q Consensus       121 K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~  199 (307)
                      |.++  +|+|.||+.+++..+.+.+.... .....++...+....+.++....  +...+..+.++..+..++.. ....
T Consensus       295 Kiia--PGlRlG~it~~~~~l~ril~~ae-~~t~~pSg~sq~iv~a~l~~wgq--eG~~~wi~~l~~~Yt~Rrn~~l~Al  369 (472)
T KOG0634|consen  295 KIIA--PGLRLGWITGNSLFLKRILDLAE-VATSGPSGFSQGIVYAMLKRWGQ--EGFLRWIQHLRSSYTERRNALLSAL  369 (472)
T ss_pred             hhhc--CcceeEEeecCHHHHHHHhhhcc-eeecCcccccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9994  69999999998665555444333 23333444444444433332211  11122222222222221100 0000


Q ss_pred             cCCCCCCCch-HHHhhhccCCCceEEEEeC--------CHHHHHHH-HhcCCcceeecCCCCccceeecccccCCCCCcH
Q 021783          200 YAGLPEHPGH-ELHYSQAKGAGSVLSFLTG--------SLALSKHV-VETTKYFSITVSFGSVKSLISMPCFMSHASIPV  269 (307)
Q Consensus       200 ~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~  269 (307)
                      +..+   |.- ..+.+  ...|.++|++++        +.++.+++ ...+..+||.+..|..|...  |....      
T Consensus       370 ~kyl---p~~~~~~~~--P~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~--p~~s~------  436 (472)
T KOG0634|consen  370 DKYL---PKSVCEYHP--PKAGMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVD--PESSW------  436 (472)
T ss_pred             HHhC---CCCeeEEec--CCcceEEEEEecccccccccchHHHHHHHHHHHHHCCeEEecCceeEEc--CccCC------
Confidence            0001   111 11111  224778888883        45544444 44466789999999987654  21110      


Q ss_pred             HHHHhcCCCCCeEEEEeccC---ChHHHHHHHHHHHh
Q 021783          270 EVRQARGLTEDLVRISVGIE---DVNDLISDLDKALR  303 (307)
Q Consensus       270 ~~~~~~~~~~~~iRis~~~~---~~~~~i~~l~~~l~  303 (307)
                              ++-++|+|++..   +.++.+++|...++
T Consensus       437 --------~kiffRls~a~a~~e~l~~g~~rf~~~ik  465 (472)
T KOG0634|consen  437 --------SKIFFRLSIAFAEPEKLDEGIERFGSVIK  465 (472)
T ss_pred             --------CcceEEEEeecCCHHHHHHHHHHHHHHHH
Confidence                    124799999874   44455555555554

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.88  E-value=4.1e-21  Score=169.12  Aligned_cols=188  Identities=22%  Similarity=0.293  Sum_probs=146.1

Q ss_pred             CcHHHHHHHhcCCCCeEEEcCCCCc---chHHHHhhhcccCCcEEEEecC---CChHHHHhhcCCCceEEEEeCCCCCc-
Q 021783            1 MAALAAVTHLLGTGEEIVAGDDLYG---GTDRLLSRVTPKTGVVVKRVNT---CDLDEVASAIGPWTKLVWVESPTNPR-   73 (307)
Q Consensus         1 ~aal~~~~~~~~~gd~Vlv~~~~~~---~~~~~~~~~~~~~g~~~~~v~~---~d~~~l~~~l~~~~~~v~~~~~~n~t-   73 (307)
                      |+|+.+++..+.+||+|++++.+|.   +.... ...++..|+++++++.   .++++++++++++|+++++++++|++ 
T Consensus       147 ~aAi~l~l~~l~~GdeVIvs~~e~v~~ggs~~i-~~~~~~~G~~~~~v~~~~~~~l~dle~aI~~~T~lv~~~h~sN~~~  225 (454)
T TIGR00474       147 AAAVLLALNTLAKGKEVIVSRGELVEIGGSFRI-PDVMEQSGAKLVEVGTTNRTHLKDYEDAITENTALLLKVHTSNYRI  225 (454)
T ss_pred             HHHHHHHHHHhCCcCEEEECCChhhhhcchhhH-HHHHHHcCCEEEEeCCCCCCCHHHHHHhcCcCCEEEEEEccCcccc
Confidence            3566545566799999999998753   22222 2456778999999987   47899999999999999999999984 


Q ss_pred             -c--ccccHHHHHHHHHHcCCEEEEeCccC---------CCC---cCCccCCCccEEEeccccccccCCCceeEEEEEcC
Q 021783           74 -Q--QICDIRKIAEMAHAHGALLLVDNSIM---------SPV---LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG  138 (307)
Q Consensus        74 -G--~~~~~~~l~~~~~~~~~~li~D~a~~---------~~~---~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~  138 (307)
                       |  ...|+++|+++||+||+++++|.+.+         .+.   ..++.++|+|++++|.+|+++||.   +|++++++
T Consensus       226 ~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~---~G~i~g~~  302 (454)
T TIGR00474       226 VGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQ---AGIIVGKK  302 (454)
T ss_pred             cCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCe---EEEEEECH
Confidence             6  47899999999999999999998632         111   124556799999999999998774   89999987


Q ss_pred             hhHHH--------HHH-------HHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 021783          139 ERLAK--------ELY-------FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       139 ~~~~~--------~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~  192 (307)
                      +.+..        .++       .+....+.++.+..+|....+++.+..+++++.++++.+.++|+..
T Consensus       303 ~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~  371 (454)
T TIGR00474       303 ELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAA  371 (454)
T ss_pred             HHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhh
Confidence            65521        122       2233445566777888889999999999999999999999999874

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.88  E-value=4.8e-21  Score=166.58  Aligned_cols=275  Identities=21%  Similarity=0.240  Sum_probs=179.8

Q ss_pred             cHH-HHHHHh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCc
Q 021783            2 AAL-AAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPR   73 (307)
Q Consensus         2 aal-~~~~~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~t   73 (307)
                      +|+ .++.++ +++||+|++|..+|.++.    ..+...|++++++|.+      |++++++.++++|++|+++|   ..
T Consensus        51 ~Al~~al~~l~~~~gdeVi~p~~t~~~~~----~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~h---~~  123 (363)
T PF01041_consen   51 SALHLALRALGLGPGDEVIVPAYTFPATA----SAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTKAILVVH---LF  123 (363)
T ss_dssp             HHHHHHHHHTTGGTTSEEEEESSS-THHH----HHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE----GG
T ss_pred             HHHHHHHHhcCCCcCceEecCCCcchHHH----HHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEec---CC
Confidence            456 444443 679999999999999998    6677899999999984      89999999999999999764   56


Q ss_pred             cccccHHHHHHHHHHcCCEEEEeCccCCCCcCCc---cCCCccEEEeccc--cccccCCCceeEEEEEcChhHHHHHHHH
Q 021783           74 QQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP---LELGADIVMHSAT--KFIAGHSDVMAGVLAVKGERLAKELYFL  148 (307)
Q Consensus        74 G~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~---~~~~~d~~~~s~~--K~~~g~~g~~~G~~~~~~~~~~~~~~~~  148 (307)
                      |..+|+++|.++|+++|++||+|++|+.|.....   ..+ .|+.++||+  |.+. ..+  +|+++++++.+.+.+..+
T Consensus       124 G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~-gd~~~fSf~~~K~i~-~ge--GG~v~~~~~~~~~~~~~~  199 (363)
T PF01041_consen  124 GNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSF-GDIAIFSFHPTKIIT-TGE--GGAVVTNDPELAERARAL  199 (363)
T ss_dssp             GB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSS-SSEEEEESSTTSSS--SSS---EEEEESTHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCC-CCceEecCCCCCCCc-CCC--CeeEEecHHHHHHHhhhh
Confidence            8999999999999999999999999998875433   233 499999984  8773 333  899999999888877765


Q ss_pred             HHhc-----------------CCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHH
Q 021783          149 QNAE-----------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL  211 (307)
Q Consensus       149 ~~~~-----------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~  211 (307)
                      ....                 ...++.+.+.+....|+.++...+...++++.+.+.|...+.+.....+.-.+      
T Consensus       200 ~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~------  273 (363)
T PF01041_consen  200 RNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAE------  273 (363)
T ss_dssp             TBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTE------
T ss_pred             hccCcCccccccccccccCCcccccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCccccccccccc------
Confidence            4322                 12466678888888899998888888999999999998776442221111000      


Q ss_pred             HhhhccCCCceEEEEeCCH--HHHHHHHhcCCcceeecCCCCccceeecccccCC-----CCCcHHHHHhcCCCCCeEEE
Q 021783          212 HYSQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH-----ASIPVEVRQARGLTEDLVRI  284 (307)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~-----~~~~~~~~~~~~~~~~~iRi  284 (307)
                           +.....+.+.+++.  ...+.+.+.|...||.++......+...|....+     ..++......    +..+-+
T Consensus       274 -----~~~~~~f~i~~~~~~~~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~----~r~l~L  344 (363)
T PF01041_consen  274 -----RSSYYRFPIRLPDEALADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLS----QRLLSL  344 (363)
T ss_dssp             -----EBCESSEEEEETCCGCSTHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHH----HHEEEE
T ss_pred             -----ccccccccccccccccchHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHH----hCeEEC
Confidence                 01123445556543  2378899999999998887553222222322111     1233332221    344777


Q ss_pred             EeccCChHHHHHHHHHHH
Q 021783          285 SVGIEDVNDLISDLDKAL  302 (307)
Q Consensus       285 s~~~~~~~~~i~~l~~~l  302 (307)
                      .....-.++.++.+.+++
T Consensus       345 P~~~~lt~edv~~I~~~i  362 (363)
T PF01041_consen  345 PIHPRLTEEDVDYIAEAI  362 (363)
T ss_dssp             EHSTTSCHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHhhcc
Confidence            776544455555555554

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.88  E-value=1.4e-20  Score=162.81  Aligned_cols=248  Identities=16%  Similarity=0.135  Sum_probs=158.1

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC----CChHHHHhhcCC-------CceEEEEeCCCCCc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----CDLDEVASAIGP-------WTKLVWVESPTNPR   73 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~----~d~~~l~~~l~~-------~~~~v~~~~~~n~t   73 (307)
                      .++.+++++||+|++++++|.+....+ ..+...|++++.++.    .|++++++++++       ++++|++++|+|| 
T Consensus        62 ~~~~~l~~~gd~v~~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-  139 (338)
T cd06502          62 LALAAHTQPGGSVICHETAHIYTDEAG-APEFLSGVKLLPVPGENGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-  139 (338)
T ss_pred             HHHHHhcCCCCeEEEecCcceeeecCC-cHHHHcCceEEeecCCCCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-
Confidence            455567899999999999997654211 123447999999987    378999999864       7899999999997 


Q ss_pred             ccc---ccHHHHHHHHHHcCCEEEEeCccCCCC-----cC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHH
Q 021783           74 QQI---CDIRKIAEMAHAHGALLLVDNSIMSPV-----LS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  144 (307)
Q Consensus        74 G~~---~~~~~l~~~~~~~~~~li~D~a~~~~~-----~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~  144 (307)
                      |..   .++++|.++|+++|+++|+|++|..+.     .. .....+.|+++.|+||+++. +|  +++++.+ +.+.+.
T Consensus       140 g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~-~~--g~~~~~~-~~~~~~  215 (338)
T cd06502         140 GTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGA-PV--GAVVVGN-RDFIAR  215 (338)
T ss_pred             ccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCC-cc--ceEEECC-HHHHHH
Confidence            544   357889999999999999999974221     11 11124688999999999954 44  4545555 445554


Q ss_pred             HHHHHHhcC--CCCChhhHHHHhhcccc--HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCC
Q 021783          145 LYFLQNAEG--SGLAPFDCWICLRGVKT--MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG  220 (307)
Q Consensus       145 ~~~~~~~~~--~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  220 (307)
                      +.......+  ...+...+..+..+++.  +..+.++..++.+.+.+.|++.+.         ...          ....
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~---------~~~----------~~~~  276 (338)
T cd06502         216 ARRRRKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEELGG---------LES----------EVQT  276 (338)
T ss_pred             HHHHHHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcCC---------Ccc----------cccC
Confidence            444332222  22334445555555543  444556666777777777775431         000          1135


Q ss_pred             ceEEEEeC-CHHHHHHHHhcCC---cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHH
Q 021783          221 SVLSFLTG-SLALSKHVVETTK---YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS  296 (307)
Q Consensus       221 ~~~~~~~~-~~~~~~~~~~~l~---~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~  296 (307)
                      +++.+.++ +......+.+++.   .+|+.+....                           .+++|++++....++.++
T Consensus       277 ~~~~v~~~~~~~~~~~l~~~l~~~~~~gi~~~~~~---------------------------~~~lRi~~~~~~~~~~i~  329 (338)
T cd06502         277 NIVLLDPVEANAVFVELSKEAIERRGEGVLFYAWG---------------------------EGGVRFVTHWDTTEEDVD  329 (338)
T ss_pred             CeEEEecCCccHHHHHHHHHHHHhhhCCEEEEecC---------------------------CCeEEEEeecCCCHHHHH
Confidence            66666664 3233445554442   4566543211                           145999999876777777


Q ss_pred             HHHHHHhc
Q 021783          297 DLDKALRT  304 (307)
Q Consensus       297 ~l~~~l~~  304 (307)
                      .+.++++.
T Consensus       330 ~~~~~l~~  337 (338)
T cd06502         330 ELLSALKA  337 (338)
T ss_pred             HHHHHHhc
Confidence            77776654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.87  E-value=6.8e-21  Score=166.22  Aligned_cols=246  Identities=17%  Similarity=0.232  Sum_probs=148.0

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcC------CCceEEEEeCCCCCcccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG------PWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~------~~~~~v~~~~~~n~tG~~~~   78 (307)
                      +++..+.++||.|+++...|.+....+...   .+.. +.++.+|++++++.++      +++.+|++++++|++|.+.|
T Consensus        86 ~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~---~~~~-~~~~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~p  161 (370)
T PRK05937         86 GLCAHLSSVTDYVLWDEQVHISVVYSLSVI---SGWH-QSFRHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAP  161 (370)
T ss_pred             HHHHHhCCCCCEEEEEhhhhHHHHHHHHHc---CCce-EEecCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccC
Confidence            333344578899999999998888665431   2333 4467789999999886      34667788999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcC-Ccc----CCC---ccEEEeccccccccCCCceeEEEEEcChhHHHHHHH-HH
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLS-RPL----ELG---ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQ  149 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~----~~~---~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~-~~  149 (307)
                      +++|.++|+++|+++++|++|+.|.+. +..    .++   .++.+.|++|.+ |+.|  +|++. .++ ....+.. ..
T Consensus       162 l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~-g~~G--~~vl~-~~~-~~~~~~~~~~  236 (370)
T PRK05937        162 LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKAL-GSMG--AALLS-SSE-VKQDLMLNSP  236 (370)
T ss_pred             HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhh-hcCc--eEEEc-CHH-HHHHHHHhCC
Confidence            999999999999999999999987654 321    233   246789999999 5666  55544 433 2222221 11


Q ss_pred             Hh-cCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC
Q 021783          150 NA-EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  228 (307)
Q Consensus       150 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  228 (307)
                      .. ...+.++........+++.+....+...+..+.+.+++...          +...           ..+....+.++
T Consensus       237 ~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~----------l~~~-----------~~~~~~~i~~~  295 (370)
T PRK05937        237 PLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQK----------FSSA-----------APGCVQPIFLP  295 (370)
T ss_pred             CCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh----------cCCC-----------CCCCEEEEEeC
Confidence            11 11223333333333444433221122233344444444322          1100           01112334555


Q ss_pred             CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          229 SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       229 ~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                      +.+ ...+.+.|..+||.++.      .+.|                  ..+++|+|++.    +|++++++.|.+.+++
T Consensus       296 ~~~-~~~~~~~L~~~gi~v~~------~~~~------------------~~~~iRis~~~~~t~edid~l~~~L~~~~~~  350 (370)
T PRK05937        296 GIS-EQELYSKLVETGIRVGV------VCFP------------------TGPFLRVNLHAFNTEDEVDILVSVLATYLEK  350 (370)
T ss_pred             Chh-HHHHHHHHHHCCeeEEe------eCCC------------------CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence            544 56788888888997753      1112                  13469999976    5566666666555544


Q ss_pred             C
Q 021783          305 G  305 (307)
Q Consensus       305 ~  305 (307)
                      +
T Consensus       351 ~  351 (370)
T PRK05937        351 Y  351 (370)
T ss_pred             h
Confidence            3

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.87  E-value=1.3e-20  Score=148.03  Aligned_cols=253  Identities=19%  Similarity=0.186  Sum_probs=177.7

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcC-------CCceEEEEeCCC
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG-------PWTKLVWVESPT   70 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~-------~~~~~v~~~~~~   70 (307)
                      ++..+++++||.|++...+|.+++    .++++.|.++..+|..       +++...+.+.       ..+.+.+++|+.
T Consensus        91 avMhal~~~gd~vV~D~~aHYtty----vAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~D  166 (382)
T COG1103          91 AVMHALCKEGDWVVVDSLAHYTTY----VAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVD  166 (382)
T ss_pred             HHHHHhccCCCEEEEcCcchHHHH----HHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccC
Confidence            344568999999999999999998    7789999999999963       5666555553       347899999999


Q ss_pred             CCccccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           71 NPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        71 n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                      ...|++.|.++++++|+++|++++..+||..|.++ +..+.|+|++++|.||.++....  +|++..+.+.....++...
T Consensus       167 g~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmAAs~P--iGvl~~~eE~ae~V~r~Sg  244 (382)
T COG1103         167 GEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAP--IGVLAMSEEWAEIVLRRSG  244 (382)
T ss_pred             CCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEecCccchhccCC--eeEEeehhHHHHHHHhhcc
Confidence            99999999999999999999999999999999998 88889999999999999865444  9999998665444444432


Q ss_pred             H--------hcCCCCChhhHHHHhhccccHHHHHHHHHH---HHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          150 N--------AEGSGLAPFDCWICLRGVKTMALRVEKQQD---NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       150 ~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      .        ..|++.........++.+....+|..++.+   .++.+.+.+++..++.   ..+.           .|. 
T Consensus       245 ~~~~~KEvellGCT~rGapivTlmASfP~V~eRVkrWdeEv~kaR~fv~elEkigg~~---qlG~-----------rPk-  309 (382)
T COG1103         245 RAFPKKEVELLGCTVRGAPIVTLMASFPHVVERVKRWDEEVEKARWFVAELEKIGGVK---QLGE-----------RPK-  309 (382)
T ss_pred             cccccceeeeecccccCchHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HhCC-----------CCc-
Confidence            2        134444445566667777777777666654   4445555555432221   1110           000 


Q ss_pred             CCceEEEEeCCHHH--------HHHHHhcCCccee-ecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEe---
Q 021783          219 AGSVLSFLTGSLAL--------SKHVVETTKYFSI-TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV---  286 (307)
Q Consensus       219 ~~~~~~~~~~~~~~--------~~~~~~~l~~~gi-~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~---  286 (307)
                      ...++.|..+....        .--++++|+..|| ++.+|..                           .++.+|+   
T Consensus       310 ~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~GI~~G~T---------------------------k~~K~svyGl  362 (382)
T COG1103         310 NHDLMKFETPVFHEIAKKHKRKGYFLYEELKKRGIHGIQPGQT---------------------------KYFKLSVYGL  362 (382)
T ss_pred             ccceeeecCchHHHHHHhCcCCceeeHHHHHhcCccccccCce---------------------------eEEEEEeecC
Confidence            11233333222111        1124566777777 5555543                           2377777   


Q ss_pred             ccCChHHHHHHHHHHHhcC
Q 021783          287 GIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       287 ~~~~~~~~i~~l~~~l~~~  305 (307)
                      +.++++.+++.|+++++++
T Consensus       363 ~~Eqve~V~~afkeI~eky  381 (382)
T COG1103         363 SWEQVEYVVDAFKEIAEKY  381 (382)
T ss_pred             CHHHHHHHHHHHHHHHHhc
Confidence            3489999999999998875

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.87  E-value=2.2e-20  Score=163.31  Aligned_cols=242  Identities=13%  Similarity=0.113  Sum_probs=161.1

Q ss_pred             CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcC---CCceEEEEeCCCCCccccccHHHHHHHHHH
Q 021783           12 GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICDIRKIAEMAHA   88 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~   88 (307)
                      +++|.|+.....|.+......-..+..+++++.++++|+++|++.++   .+.++|+++.+.++.|.+.|+++|.++|++
T Consensus       198 ~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HND~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~  277 (476)
T PLN02955        198 NEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHCDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKK  277 (476)
T ss_pred             CCCcEEEEeccchHHHHHHHHhccccCCceEEEeCCCCHHHHHHHHHhCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHH
Confidence            56778888888998877443211111268999999999999998885   346788888999999999999999999999


Q ss_pred             cCCEEEEeCccCCCCcCC---------ccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhc--CCCCC
Q 021783           89 HGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE--GSGLA  157 (307)
Q Consensus        89 ~~~~li~D~a~~~~~~~~---------~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~--~~~~~  157 (307)
                      ||+++|+||+|+.|.+..         ....+.|++++|++|.+++ .   +|+++++++ +.+.+....+..  +..++
T Consensus       278 ~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~-~---GGfi~gs~~-~~~~l~~~~~~~ifStalp  352 (476)
T PLN02955        278 YGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGC-H---GGFIACSKK-WKQLIQSRGRSFIFSTAIP  352 (476)
T ss_pred             cCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhc-c---CceeecHHH-HHHHHHHhCCCCeeccccc
Confidence            999999999998665421         1112579999999999843 3   799998854 555555433322  22333


Q ss_pred             hhhHHHHhhccccH---HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHH
Q 021783          158 PFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSK  234 (307)
Q Consensus       158 ~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (307)
                      +........+++.+   ..+.+++.++.+.+.+.    .        ++.             ..++++.+.+.+...+.
T Consensus       353 p~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~----~--------G~~-------------~~sPI~pI~ig~~~~a~  407 (476)
T PLN02955        353 VPMAAAAYAAVVVARKEKWRRKAIWERVKEFKAL----S--------GVD-------------ISSPIISLVVGNQEKAL  407 (476)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh----c--------CCC-------------CCCCEEEEEeCCHHHHH
Confidence            33444444444332   22333344444433331    0        111             12678899998888889


Q ss_pred             HHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 021783          235 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  303 (307)
Q Consensus       235 ~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  303 (307)
                      .+.+.|.++|+.+..      ..+|....              +...+||+++..+.++.++.|.++|.
T Consensus       408 ~~~~~L~~~Gi~v~~------i~yPtVP~--------------g~~rLRi~lsA~Ht~edId~lv~~L~  456 (476)
T PLN02955        408 KASRYLLKSGFHVMA------IRPPTVPP--------------NSCRLRVTLSAAHTTEDVKKLITALS  456 (476)
T ss_pred             HHHHHHHHCCCEEEE------ECCCCCCC--------------CCceEEEeeCCCCCHHHHHHHHHHHH
Confidence            999999999998775      33342221              23469999987555555555555543

>PRK04311 selenocysteine synthase; Provisional

Probab=99.87  E-value=6.5e-21  Score=168.33  Aligned_cols=188  Identities=21%  Similarity=0.234  Sum_probs=135.6

Q ss_pred             cHHHHHHHhcCCCCeEEEcCCCCcch--HHHHhhhcccCCcEEEEecC---CChHHHHhhcCCCceEEEEeCCCCC--cc
Q 021783            2 AALAAVTHLLGTGEEIVAGDDLYGGT--DRLLSRVTPKTGVVVKRVNT---CDLDEVASAIGPWTKLVWVESPTNP--RQ   74 (307)
Q Consensus         2 aal~~~~~~~~~gd~Vlv~~~~~~~~--~~~~~~~~~~~g~~~~~v~~---~d~~~l~~~l~~~~~~v~~~~~~n~--tG   74 (307)
                      +|+.+++..+.+||+|++++.+|.++  ...+....+..|+++++++.   .++++++++++++|++++++|++|+  +|
T Consensus       153 aAl~l~l~~l~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~~t~~~dle~aI~~~TklV~~vh~sN~~i~G  232 (464)
T PRK04311        153 AAVLLALNALAAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTNRTHLRDYEQAINENTALLLKVHTSNYRIEG  232 (464)
T ss_pred             HHHHHHHHHhCCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCCCCCHHHHHHhcCccCeEEEEEcCCCccccc
Confidence            56655556678999999998866532  11123456788999999986   3788999999999999999999997  34


Q ss_pred             --ccccHHHHHHHHHHcCCEEEEeCccCC---------CCcC---CccCCCccEEEeccccccccCCCceeEEEEEcChh
Q 021783           75 --QICDIRKIAEMAHAHGALLLVDNSIMS---------PVLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  140 (307)
Q Consensus        75 --~~~~~~~l~~~~~~~~~~li~D~a~~~---------~~~~---~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~  140 (307)
                        ...|+++|.++||+||+++++|++++.         +..+   .+.++|+|++++|++|+++||.   +|+++++++.
T Consensus       233 ~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~---~G~i~g~~~l  309 (464)
T PRK04311        233 FTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQ---AGIIVGKKEL  309 (464)
T ss_pred             cCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCc---eEEEEEcHHH
Confidence              567999999999999999999995421         1112   3445799999999999998774   8999998665


Q ss_pred             HHHHHHH-----HHHhcCCCCCh-----------hhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCC
Q 021783          141 LAKELYF-----LQNAEGSGLAP-----------FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP  193 (307)
Q Consensus       141 ~~~~~~~-----~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~  193 (307)
                      +. .+..     ..+..+..++.           ..++.....++.+..+++++.++++.+.++|+.+.
T Consensus       310 i~-~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~  377 (464)
T PRK04311        310 IA-RLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAAL  377 (464)
T ss_pred             HH-HHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhcc
Confidence            43 2321     11111222222           23333444455577788999999999999998764

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.86  E-value=5.9e-20  Score=163.08  Aligned_cols=259  Identities=21%  Similarity=0.196  Sum_probs=163.6

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHh-hhcccCCcEEEEecCC------ChHHHHhhcC-CCceEEEEeCCCCCcccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLS-RVTPKTGVVVKRVNTC------DLDEVASAIG-PWTKLVWVESPTNPRQQI   76 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~------d~~~l~~~l~-~~~~~v~~~~~~n~tG~~   76 (307)
                      .++.++++|||+|+++.++|+++...+. ......|++++.++.+      |++++++.++ .+++++++++++  +|..
T Consensus       102 ~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~k~v~~~~~~--~~~~  179 (416)
T PRK00011        102 AVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASA--YSRP  179 (416)
T ss_pred             HHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHhcCCCEEEECCCc--CCCc
Confidence            4556678999999999999976542211 1224456788877652      7899999986 478999887544  4667


Q ss_pred             ccHHHHHHHHHHcCCEEEEeCccCCCCc-----CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHh
Q 021783           77 CDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  151 (307)
Q Consensus        77 ~~~~~l~~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~  151 (307)
                      .|+++|.++|+++|+++|+|++|+.|..     +.... ++|++++|+||+++|+.   +|+++++++.+.+.+......
T Consensus       180 ~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-~~di~~~S~~K~l~g~~---gg~i~~~~~~~~~~l~~~~~~  255 (416)
T PRK00011        180 IDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-HADVVTTTTHKTLRGPR---GGLILTNDEELAKKINSAVFP  255 (416)
T ss_pred             cCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC-CCcEEEecCCcCCCCCC---ceEEEeCCHHHHHHHHHHhCc
Confidence            7999999999999999999999976543     22223 68999999999986554   789898765565555444322


Q ss_pred             cCC-CCCh-hhHHHHhhccc----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEE
Q 021783          152 EGS-GLAP-FDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  225 (307)
Q Consensus       152 ~~~-~~~~-~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  225 (307)
                      ... .... ....+..+..+    .+..+.+++.++++.+.+.|++.. + .+. +.              ...++++++
T Consensus       256 ~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-~~~-~~--------------~~~~~~~~i  318 (416)
T PRK00011        256 GIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERG-F-RVV-SG--------------GTDNHLVLV  318 (416)
T ss_pred             cccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC-C-eee-ec--------------CCCCeEEEE
Confidence            111 1111 11111111111    235566777788888888887541 1 110 00              112467777


Q ss_pred             EeCCHH-HHHHHHhcCCcceeecCCCCc-cceeecccccCCCCCcHHHHHhcCCCCCeEEEEe------c--cCChHHHH
Q 021783          226 LTGSLA-LSKHVVETTKYFSITVSFGSV-KSLISMPCFMSHASIPVEVRQARGLTEDLVRISV------G--IEDVNDLI  295 (307)
Q Consensus       226 ~~~~~~-~~~~~~~~l~~~gi~v~~g~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~------~--~~~~~~~i  295 (307)
                      .+++.. ....+.+.|...||.++.+.. +. ...|                 ..++.+|++.      +  .+|+++++
T Consensus       319 ~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~-~~~~-----------------~~~~~~Ri~~~~~~~~~~t~~di~~l~  380 (416)
T PRK00011        319 DLRSKGLTGKEAEAALEEANITVNKNAVPFD-PRSP-----------------FVTSGIRIGTPAITTRGFKEAEMKEIA  380 (416)
T ss_pred             eCcccCCCHHHHHHHHHHcCcEEccCcCCCC-CCCC-----------------CCCCceEecCHHHhhcCcCHHHHHHHH
Confidence            775321 356678888888998875432 10 0001                 0134588854      1  36788888


Q ss_pred             HHHHHHHhc
Q 021783          296 SDLDKALRT  304 (307)
Q Consensus       296 ~~l~~~l~~  304 (307)
                      +.|++++..
T Consensus       381 ~~l~~~~~~  389 (416)
T PRK00011        381 ELIADVLDN  389 (416)
T ss_pred             HHHHHHHhc
Confidence            888877653

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.86  E-value=1.6e-20  Score=168.39  Aligned_cols=127  Identities=25%  Similarity=0.370  Sum_probs=105.2

Q ss_pred             hcCCCC----eEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCcccc-ccH
Q 021783           10 LLGTGE----EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQI-CDI   79 (307)
Q Consensus        10 ~~~~gd----~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~-~~~   79 (307)
                      +.++||    +|+++++.|+++.    ..++..|++++.++.+     |++++++.+++++++|++++|+ +||.. .|+
T Consensus       153 ~~~~Gd~~~~~Vlv~~~~hp~~~----~~~~~~G~~vv~v~~~~~~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~~~dl  227 (481)
T PRK04366        153 HEARGDTKRTEVIVPDSAHGTNP----ASAAMAGFKVVEIPSNEDGLVDLEALKAAVGEDTAALMLTNPN-TLGLFERNI  227 (481)
T ss_pred             hhccCcCCCCEEEEcCCccHhHH----HHHHHcCCEEEEeecCCCCCcCHHHHHhhcccCCeEEEEeCCC-CccccchHH
Confidence            356776    9999999998888    4467789999999873     7899999999899999999988 89987 489


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCc--CCccCCCccEEEeccccccccCCCc---eeEEEEEcChhH
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVL--SRPLELGADIVMHSATKFIAGHSDV---MAGVLAVKGERL  141 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~--~~~~~~~~d~~~~s~~K~~~g~~g~---~~G~~~~~~~~~  141 (307)
                      ++|+++|+++|+++++|+++..+..  .++.++|+|++++|+||++++|.|.   -+|+++++++..
T Consensus       228 ~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~  294 (481)
T PRK04366        228 LEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELA  294 (481)
T ss_pred             HHHHHHHHHcCCEEEEEecChhhhcccCCccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhH
Confidence            9999999999999999999975432  2677889999999999998755321   178999886543

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.85  E-value=1.3e-19  Score=158.71  Aligned_cols=251  Identities=17%  Similarity=0.158  Sum_probs=159.0

Q ss_pred             CCeEEEcCCCCcchHHHHhhhcccCC--cEEEEecC------CChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHH
Q 021783           14 GEEIVAGDDLYGGTDRLLSRVTPKTG--VVVKRVNT------CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM   85 (307)
Q Consensus        14 gd~Vlv~~~~~~~~~~~~~~~~~~~g--~~~~~v~~------~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~   85 (307)
                      ||+|+.-+..++.....- ......|  .+.+..+.      .|.+++++.+.++++.+++++.+|. |...|+++|.++
T Consensus       166 gd~i~~l~l~~GGHlthg-~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~-~~~~dl~~i~ei  243 (493)
T PRK13580        166 NQRLLGMSLDSGGHLTHG-FRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAY-PRRVNFAKLREI  243 (493)
T ss_pred             CCEEEeecCCCCCeeecC-cccchhhheeeeEecccCcccCccCHHHHHHHHhhcCCEEEEeCcccc-CCCcCHHHHHHH
Confidence            899997777665443110 0001111  22222222      3889999999988889999988886 568899999999


Q ss_pred             HHHcCCEEEEeCccCCCCcC-Ccc------CCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHh-cCCCCC
Q 021783           86 AHAHGALLLVDNSIMSPVLS-RPL------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-EGSGLA  157 (307)
Q Consensus        86 ~~~~~~~li~D~a~~~~~~~-~~~------~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~  157 (307)
                      |+++|+++++|++|+.|.+. ...      ..++|++++|+||++.||.   +|+++++++ +.+.+....+. .+...+
T Consensus       244 a~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~---GG~I~~~~~-l~~~L~~a~P~i~gg~l~  319 (493)
T PRK13580        244 ADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPR---GGLVLAKKE-YADAVDKGCPLVLGGPLP  319 (493)
T ss_pred             HHHcCCEEEEECchhhceeccccchhhcCCCCCCcEEEeCChhhccCCC---eEEEEecHH-HHHHHhhCCCcccCCCcc
Confidence            99999999999999988765 221      1368999999999997776   699999865 33434322222 222333


Q ss_pred             hhhHHHHhhcc----ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHH-
Q 021783          158 PFDCWICLRGV----KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLAL-  232 (307)
Q Consensus       158 ~~~~~~~~~~l----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  232 (307)
                      +..+..+.+..    ..+..+.+++.+|++.+.+.|..+.      ++.+.   +        ...++++.+.+.+... 
T Consensus       320 p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~G------~~vv~---g--------gTdshIV~V~lg~~~~~  382 (493)
T PRK13580        320 HVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKRG------ARLVT---G--------GTDNHLVLIDVTSFGLT  382 (493)
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhcC------CCccC---C--------CCCCCEEEEEeCCHHHH
Confidence            33222222211    1234467888899999999887652      11000   0        1135788888876553 


Q ss_pred             HHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--------CChHHHHHHHHHHHhc
Q 021783          233 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--------EDVNDLISDLDKALRT  304 (307)
Q Consensus       233 ~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--------~~~~~~i~~l~~~l~~  304 (307)
                      ...+.+.|.+.||.+..      ...|.....           ....+.|||++..        +|++++.+.|.++++.
T Consensus       383 g~~a~~~L~e~GI~vn~------i~~Ptvp~g-----------~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~  445 (493)
T PRK13580        383 GRQAESALLDAGIVTNR------NSIPSDPNG-----------AWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSN  445 (493)
T ss_pred             HHHHHHHHHHCCeEEcc------ccCCCCCCC-----------CCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHh
Confidence            34666688888997765      223322211           0124569999854        6788888888777653

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.85  E-value=2.6e-20  Score=166.71  Aligned_cols=134  Identities=28%  Similarity=0.360  Sum_probs=110.6

Q ss_pred             HHHHHh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            5 AAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         5 ~~~~~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      ++++++ .++||+|+++++.|+++...+...+...|++++.++.+    |++++++++++++++|++++| |+||.+.|+
T Consensus       144 ~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d~~~l~~~i~~~t~~v~l~~p-n~tG~v~~l  222 (447)
T PRK00451        144 AALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDGVTDLEALEAAVDDDTAAVVVQYP-NFFGVIEDL  222 (447)
T ss_pred             HHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCCCCCHHHHHHhcCCCeEEEEEECC-CCCCeeCCH
Confidence            445555 47999999999999999887777777789999999885    889999999999999999998 889999999


Q ss_pred             HHHHHHHHHcCCEEEE--eCccCCCCcCCccCCCccEEEeccccc-----cccCCCceeEEEEEcChhHHH
Q 021783           80 RKIAEMAHAHGALLLV--DNSIMSPVLSRPLELGADIVMHSATKF-----IAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~--D~a~~~~~~~~~~~~~~d~~~~s~~K~-----~~g~~g~~~G~~~~~~~~~~~  143 (307)
                      ++|.++|+++|+++++  |.. +.+....+.++++|++++|.+|+     ++|| |  +|+++++++.+..
T Consensus       223 ~~I~~~a~~~~~~~iv~~d~~-~~g~~~~~~~~~~D~~~~s~~k~~~~~~~~Gp-g--~G~l~~~~~~~~~  289 (447)
T PRK00451        223 EEIAEIAHAGGALFIVGVDPV-SLGLLKPPGEYGADIVVGEGQPLGIPLSFGGP-Y--LGFFATRKKLVRQ  289 (447)
T ss_pred             HHHHHHHHHCCCEEEEEcChH-HhccCCCcccCCCCEEEECCCcCCCCCCCCCC-C--chHHHhhHHHHhh
Confidence            9999999999999998  543 45555556778999999988885     5444 4  8999988654443

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.85  E-value=6.7e-19  Score=155.78  Aligned_cols=265  Identities=17%  Similarity=0.145  Sum_probs=174.3

Q ss_pred             cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHH
Q 021783           11 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE   84 (307)
Q Consensus        11 ~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~   84 (307)
                      ++|||+|++++++|+++.    ..+...|++++.++.+      |++++++.++++|++|++++   ++|...++++|.+
T Consensus       108 ~~pGd~VIv~~~t~~a~~----~~v~~~G~~pv~vdvd~~~~~id~~~le~~i~~~tkaVi~~~---~~G~p~dl~~I~~  180 (438)
T PRK15407        108 LKPGDEVITVAAGFPTTV----NPIIQNGLVPVFVDVELPTYNIDASLLEAAVSPKTKAIMIAH---TLGNPFDLAAVKA  180 (438)
T ss_pred             CCCCCEEEECCCCcHHHH----HHHHHcCCEEEEEecCCCcCCcCHHHHHHHcCcCCeEEEEeC---CCCChhhHHHHHH
Confidence            589999999999999888    4455679999998863      78999999999999999876   4688889999999


Q ss_pred             HHHHcCCEEEEeCccCCCCcCCc---cCCCccEEEeccc--cccccCCCceeEEEEEcChhHHHHHHHHHHhc-------
Q 021783           85 MAHAHGALLLVDNSIMSPVLSRP---LELGADIVMHSAT--KFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-------  152 (307)
Q Consensus        85 ~~~~~~~~li~D~a~~~~~~~~~---~~~~~d~~~~s~~--K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~-------  152 (307)
                      +|+++|+++|+|++|+.|...+.   ..+| |+.++||+  |.+.. .+  +|+++++++.+.+.........       
T Consensus       181 la~~~gi~vIeDaa~a~G~~~~g~~~G~~g-d~~~fSf~~~k~~~~-ge--GG~l~t~d~~l~~~~~~~~~~G~~~~~~~  256 (438)
T PRK15407        181 FCDKHNLWLIEDNCDALGSTYDGRMTGTFG-DIATLSFYPAHHITM-GE--GGAVFTNDPLLKKIIESFRDWGRDCWCAP  256 (438)
T ss_pred             HHHHCCCEEEEECccchhhhcCCeeeeccC-ceEEEeCCCCCCccc-cC--ceEEEECCHHHHHHHHHHHHhCccccccc
Confidence            99999999999999998876533   3334 88899986  44532 22  7999999998877665543321       


Q ss_pred             ------------------------------C--CCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEec
Q 021783          153 ------------------------------G--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNY  200 (307)
Q Consensus       153 ------------------------------~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  200 (307)
                                                    |  ..++...+.+....|+.++...++..++++.+.+.|...+..  +..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~~~--~~~  334 (438)
T PRK15407        257 GCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLASLEDF--LIL  334 (438)
T ss_pred             ccccccccccccccccccccccccccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc--ccc
Confidence                                          1  134556677777778888777788888888888877654321  111


Q ss_pred             CCCCCCCchHHHhhhccCCCc--eEEEEeCCH--HHHHHHHhcCCcceeecCCCCccceeecccccCC-----CCCcHHH
Q 021783          201 AGLPEHPGHELHYSQAKGAGS--VLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH-----ASIPVEV  271 (307)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~-----~~~~~~~  271 (307)
                      +..           +++...+  .+.+.+++.  ...+.+.+.|+++||.++......+..+|.....     ..+|...
T Consensus       335 ~~~-----------~~~~~~~~~~~~i~~~~~~~~~Rd~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae  403 (438)
T PRK15407        335 PEA-----------TPNSDPSWFGFPITVKEDAGFTRVELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTD  403 (438)
T ss_pred             CcC-----------CCCCeeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCChHHH
Confidence            111           0111122  333444421  2368899999999998765332122233322111     1222221


Q ss_pred             HHhcCCCCCeEEEEecc----CChHHHHHHHHHHHh
Q 021783          272 RQARGLTEDLVRISVGI----EDVNDLISDLDKALR  303 (307)
Q Consensus       272 ~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~  303 (307)
                      ..    .+..+-+.+..    ++++++++.++++++
T Consensus       404 ~~----~~~~l~LP~~~~l~~~~v~~i~~~i~~~~~  435 (438)
T PRK15407        404 RI----MNDTFWIGVYPGLTEEMLDYVIEKIEEFFG  435 (438)
T ss_pred             HH----HhCeEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence            11    12335555432    567777777776654

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.85  E-value=2.3e-20  Score=166.61  Aligned_cols=258  Identities=16%  Similarity=0.133  Sum_probs=153.7

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcc------cCCcEEEEecCC-----ChHHHHhhcC-CCceEEEEeCCCCC
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP------KTGVVVKRVNTC-----DLDEVASAIG-PWTKLVWVESPTNP   72 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~------~~g~~~~~v~~~-----d~~~l~~~l~-~~~~~v~~~~~~n~   72 (307)
                      .++.+++++||+|++++.+|++....+....+      ..+.++..++.+     |++++++.+. .+++++++.  ++.
T Consensus       115 ~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~~~lvi~~--~s~  192 (452)
T PTZ00094        115 AVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFRPKLIIAG--ASA  192 (452)
T ss_pred             HHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHhCCCEEEEe--CCC
Confidence            55677889999999999999887644322111      112333444443     8999999995 367777764  345


Q ss_pred             ccccccHHHHHHHHHHcCCEEEEeCccCCCCcC-C----ccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH
Q 021783           73 RQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-R----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  147 (307)
Q Consensus        73 tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~----~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~  147 (307)
                      +|...|+++|.++|+++|+++++|++|+.|..+ +    +. .++|++++|+|||+.||.   +|+++++++........
T Consensus       193 ~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~-~~~D~l~~S~hK~l~GP~---Gg~l~~~~~~~~~l~~~  268 (452)
T PTZ00094        193 YPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPF-PYADVVTTTTHKSLRGPR---SGLIFYRKKVKPDIENK  268 (452)
T ss_pred             CCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCC-CCCcEEEcCCccCCCCCC---ceEEEEecccchHHHHh
Confidence            899999999999999999999999999988874 2    22 279999999999998887   47777765432211111


Q ss_pred             HHH----hcCCCCChhhHHHHhhccccH-----HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          148 LQN----AEGSGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       148 ~~~----~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      ...    ...++...........+++.+     ....++..++++.+.+.|++. ++ .+..++ .            ..
T Consensus       269 ~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~-g~-~v~~~~-~------------~~  333 (452)
T PTZ00094        269 INEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR-GY-DLVTGG-T------------DN  333 (452)
T ss_pred             hccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC-Cc-EEecCC-C------------CC
Confidence            110    001122222222222233322     233455566777777777553 22 111111 0            01


Q ss_pred             CCceEEEEeCCHHHHHHHHhcCCcceeecC-CCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--------C
Q 021783          219 AGSVLSFLTGSLALSKHVVETTKYFSITVS-FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--------E  289 (307)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~-~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--------~  289 (307)
                      ...++.|...+.. ...+...|...||.++ .|..+.    +               ....++.+|+|++.        +
T Consensus       334 ~~~~v~~~~~~~~-~~~~~~~L~~~gI~vs~~~~p~~----~---------------~~~~~~~vRis~~~~tt~g~~~~  393 (452)
T PTZ00094        334 HLVLVDLRPFGIT-GSKMEKLLDAVNISVNKNTIPGD----K---------------SALNPSGVRLGTPALTTRGAKEK  393 (452)
T ss_pred             ceEeecCCcCCCC-HHHHHHHHHHCCcEEecccCCCC----C---------------cCCCCCeEEECCHHHHhCCCCHH
Confidence            1223334334333 5677777777799885 332211    0               11124679999953        5


Q ss_pred             ChHHHHHHHHHHHh
Q 021783          290 DVNDLISDLDKALR  303 (307)
Q Consensus       290 ~~~~~i~~l~~~l~  303 (307)
                      |++++++.|.+.++
T Consensus       394 di~~l~~~l~~~~~  407 (452)
T PTZ00094        394 DFKFVADFLDRAVK  407 (452)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66677777766664

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.85  E-value=1e-18  Score=144.99  Aligned_cols=259  Identities=15%  Similarity=0.183  Sum_probs=168.1

Q ss_pred             HHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcC------CCceEEEEeCCCCC
Q 021783            6 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG------PWTKLVWVESPTNP   72 (307)
Q Consensus         6 ~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~------~~~~~v~~~~~~n~   72 (307)
                      +...+..|||.-+++.|-|++...   .+.=+.|++++.+.+.       +.+.+|+++.      .+.+.+++++|+||
T Consensus       162 l~fcLadpgdafLvPtPyY~gfdr---dl~~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNP  238 (471)
T KOG0256|consen  162 LMFCLADPGDAFLVPTPYYPGFDR---DLRWRTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNP  238 (471)
T ss_pred             HHHHhcCCCceeeecCCCCCcccc---cceeccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCC
Confidence            444577899999999999998864   3345678999888763       6788887775      57899999999999


Q ss_pred             cccccc---HHHHHHHHHHcCCEEEEeCccCCCCcCC------------cc-CCCccEEEeccccccccCCCceeEEEEE
Q 021783           73 RQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR------------PL-ELGADIVMHSATKFIAGHSDVMAGVLAV  136 (307)
Q Consensus        73 tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~------------~~-~~~~d~~~~s~~K~~~g~~g~~~G~~~~  136 (307)
                      -|.+.+   +..+..+|.++|+.+|+|++|+...+..            +. ..+..-++.|+||-+ |.+|.|.|.++.
T Consensus       239 LG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~-GlpGfRvGviYS  317 (471)
T KOG0256|consen  239 LGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDF-GLPGFRVGVIYS  317 (471)
T ss_pred             CCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEecccc-CCCceEEEEEEe
Confidence            999996   7788888999999999999998443321            11 224568899999999 789999999999


Q ss_pred             cChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhc
Q 021783          137 KGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  216 (307)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~  216 (307)
                      .++.+......+.....  .++..+.++...|..-+-....+.++.++++.+-+...  .++..-++..+          
T Consensus       318 ~ne~VvsaA~kmssf~~--vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~--~gLk~lgI~cl----------  383 (471)
T KOG0256|consen  318 NNEDVVSAATKMSSFGL--VSSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIV--EGLKALGIPCL----------  383 (471)
T ss_pred             cChHHHHHHHHHhhccC--CcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH--hhHHhcCCcee----------
Confidence            99988877777666543  34455555554443211112223344444443332110  00001111111          


Q ss_pred             cCCCceEEE-Ee------CCHHHHHHHHhc-CCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc
Q 021783          217 KGAGSVLSF-LT------GSLALSKHVVET-TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  288 (307)
Q Consensus       217 ~~~~~~~~~-~~------~~~~~~~~~~~~-l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~  288 (307)
                      +...++++| .+      .+.+....+.+. +...++.+++|.++. |                    ..+||+|+.|..
T Consensus       384 ~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~-C--------------------~EpGWFRvcFAn  442 (471)
T KOG0256|consen  384 KSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCH-C--------------------HEPGWFRVCFAN  442 (471)
T ss_pred             ecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcce-e--------------------cCCCeEEEEecc
Confidence            223455554 33      223323334444 444488899998743 1                    137999999975


Q ss_pred             --CChHH-HHHHHHHHHh
Q 021783          289 --EDVND-LISDLDKALR  303 (307)
Q Consensus       289 --~~~~~-~i~~l~~~l~  303 (307)
                        +++.. .+++++..+.
T Consensus       443 ~~~~t~~~am~Ri~~~~~  460 (471)
T KOG0256|consen  443 MSEETLEVAMRRLKQFLD  460 (471)
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence              34433 6777777664

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.84  E-value=5.3e-19  Score=156.05  Aligned_cols=259  Identities=19%  Similarity=0.166  Sum_probs=157.6

Q ss_pred             cHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhccc--CCcEE--EEecC------CChHHHHhhcC-CCceEEEEeCC
Q 021783            2 AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK--TGVVV--KRVNT------CDLDEVASAIG-PWTKLVWVESP   69 (307)
Q Consensus         2 aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~--~g~~~--~~v~~------~d~~~l~~~l~-~~~~~v~~~~~   69 (307)
                      +|+ +++.++++|||+|++++..|.+...   ..++.  .+...  ..++.      .|++++++.+. .++++|+++++
T Consensus       101 ~A~~~~l~al~~~GD~Vl~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~  177 (416)
T PRK13034        101 QANGAVYLALLKPGDTILGMSLSHGGHLT---HGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFS  177 (416)
T ss_pred             HHHHHHHHHhcCCCCEEEEcCccceeeee---cCCcceeccceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCC
Confidence            344 6777889999999999999976321   11111  12211  23333      58899998885 46888887654


Q ss_pred             CCCccccccHHHHHHHHHHcCCEEEEeCccCCCCcCCcc---C-CCccEEEeccccccccCCCceeEEEEEcChhHHHHH
Q 021783           70 TNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL---E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  145 (307)
Q Consensus        70 ~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~---~-~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~  145 (307)
                      .  +|...|+++|.++|++||+++++|++|+.|......   . .++|++++|+||+++|+.   +|+++++++.+.+..
T Consensus       178 ~--~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~---GG~v~~~~~~~~~~~  252 (416)
T PRK13034        178 A--YPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPR---GGMILTNDEEIAKKI  252 (416)
T ss_pred             c--cccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCC---CeEEEECcHHHHHHH
Confidence            3  578889999999999999999999999877653211   1 258999999999997765   688888777665544


Q ss_pred             HHHHHhcC---CCCChhhHHHHhhccccH----HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          146 YFLQNAEG---SGLAPFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       146 ~~~~~~~~---~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      ... ...+   ...++..+....+.++.+    ..+.+++.++++++.+.|+.. ++ .+..+               ..
T Consensus       253 ~~~-~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~-G~-~~~~~---------------~~  314 (416)
T PRK13034        253 NSA-VFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER-GY-DLVSG---------------GT  314 (416)
T ss_pred             Hhh-cCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc-CC-EeccC---------------CC
Confidence            332 1211   112222222222222221    223567777888888877654 21 11000               01


Q ss_pred             CCceEEEEeCCHH-HHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--------C
Q 021783          219 AGSVLSFLTGSLA-LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--------E  289 (307)
Q Consensus       219 ~~~~~~~~~~~~~-~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--------~  289 (307)
                      .++++.+.+.+.. ....+.+.|...||.++.-....-...|.                 .+..+|+|++.        +
T Consensus       315 ~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~-----------------~~~~lR~~~~~~t~~~~~~~  377 (416)
T PRK13034        315 DNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPF-----------------VTSGIRIGTPAGTTRGFGEA  377 (416)
T ss_pred             CCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCC-----------------CCCeeEeCcHHHHhCCCCHH
Confidence            2556666665432 35566677888888776411100011110                 14459999864        6


Q ss_pred             ChHHHHHHHHHHHh
Q 021783          290 DVNDLISDLDKALR  303 (307)
Q Consensus       290 ~~~~~i~~l~~~l~  303 (307)
                      |++++++.|.+.+.
T Consensus       378 di~~l~~~l~~~~~  391 (416)
T PRK13034        378 EFREIANWILDVLD  391 (416)
T ss_pred             HHHHHHHHHHHHHh
Confidence            77777777776664

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.84  E-value=2.6e-19  Score=157.28  Aligned_cols=249  Identities=16%  Similarity=0.056  Sum_probs=167.0

Q ss_pred             CeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHH
Q 021783           15 EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA   88 (307)
Q Consensus        15 d~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~   88 (307)
                      ..|++++.+|++..    ..++..|++++.+|.+      |+++|+++++++|.+|++++.+|.||.+.|+++|.++|++
T Consensus       139 ~~ii~s~~~H~sv~----ka~~~lg~~v~~i~~d~~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idpi~~I~~i~~~  214 (431)
T TIGR01788       139 PNLVMGSNVQVCWE----KFARYFDVELREVPMDPGRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALDE  214 (431)
T ss_pred             cEEEEcCcchHHHH----HHHHHcCceeEEEecCCCceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCCHHHHHHHHHH
Confidence            37999999998887    5666778888888763      7899999999999999999999999999999999999999


Q ss_pred             c------CCEEEEeCccCC-------CCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhH-HHHHHHHHHhc-
Q 021783           89 H------GALLLVDNSIMS-------PVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL-AKELYFLQNAE-  152 (307)
Q Consensus        89 ~------~~~li~D~a~~~-------~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~-~~~~~~~~~~~-  152 (307)
                      +      |+++++|++|+.       +..+ +....++|.++.|.|||+.+|.|  +|+++++++.. ...+.....+. 
T Consensus       215 ~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g--~G~l~~r~~~~l~~~~~~~~~yl~  292 (431)
T TIGR01788       215 YNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPG--VGWVIWRDEEALPEELIFHVNYLG  292 (431)
T ss_pred             HHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCC--cEEEEEeChHHcchhheecccccC
Confidence            9      999999999983       3333 33345789999999999878999  99999987632 12111000011 


Q ss_pred             ---------CCCC--ChhhHHHHhhc--cccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCC
Q 021783          153 ---------GSGL--APFDCWICLRG--VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  219 (307)
Q Consensus       153 ---------~~~~--~~~~~~~~~~~--l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (307)
                               ++..  .....|+.+..  ...+....++..+.++.+.+.|++.+.+.              +..+.  ..
T Consensus       293 ~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~e--------------l~~~~--~~  356 (431)
T TIGR01788       293 GDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFE--------------IISDG--SG  356 (431)
T ss_pred             CCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEE--------------EeeCC--CC
Confidence                     1111  11223443332  23445556666677777777777665331              11110  14


Q ss_pred             CceEEEEeCC----HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec----cCCh
Q 021783          220 GSVLSFLTGS----LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDV  291 (307)
Q Consensus       220 ~~~~~~~~~~----~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~  291 (307)
                      .++++|.+.+    ..+..++.+.|...|+.+..-.      .|...              .+.-++|+++-    .+.+
T Consensus       357 ~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~------~p~~~--------------~~~~~lR~~~~~~~~~~~~  416 (431)
T TIGR01788       357 IPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYT------LPKNA--------------EDIVVMRIVVREGFSRDLA  416 (431)
T ss_pred             ceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCC------CCCcc--------------CCeEEEEEEecCCCCHHHH
Confidence            6889999864    1235677778877777543211      11100              01234899884    3677


Q ss_pred             HHHHHHHHHHHhcC
Q 021783          292 NDLISDLDKALRTG  305 (307)
Q Consensus       292 ~~~i~~l~~~l~~~  305 (307)
                      +++++.|.+++..+
T Consensus       417 ~~~~~~~~~~~~~~  430 (431)
T TIGR01788       417 ELLIEDIEAALAYL  430 (431)
T ss_pred             HHHHHHHHHHHHhh
Confidence            78888887777654

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.84  E-value=5.7e-20  Score=160.58  Aligned_cols=126  Identities=15%  Similarity=0.140  Sum_probs=96.4

Q ss_pred             HH-HHHHHhcCC-CCeEEEcCCCCcchHHHHhh-hcccCCc-EEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCc
Q 021783            3 AL-AAVTHLLGT-GEEIVAGDDLYGGTDRLLSR-VTPKTGV-VVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPR   73 (307)
Q Consensus         3 al-~~~~~~~~~-gd~Vlv~~~~~~~~~~~~~~-~~~~~g~-~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~t   73 (307)
                      ++ +++..++++ ++.|++ ...|++.+   .. +++..|+ +++.++.+     |+++    ++. ++.|.++|.+|.|
T Consensus        79 ~~~~~~~~l~~~~~~~vi~-~g~f~~~~---~~~~~~~~g~~~v~~~~~~~g~~~d~~~----i~~-~~~V~~~h~~t~t  149 (378)
T PRK03080         79 AWEMALWSLLGARRVDHLA-WESFGSKW---ATDVVKQLKLEDPRVLEADYGSLPDLSA----VDF-DRDVVFTWNGTTT  149 (378)
T ss_pred             HHHHHHHhcCCCCcceEEE-eCHHHHHH---HHHHHhhcCCCCceEeccCCCCCCCHhh----cCC-CCCEEEEecCCcc
Confidence            45 344556775 455555 56776543   23 3466788 88877753     4444    332 5678999999999


Q ss_pred             cccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHH
Q 021783           74 QQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        74 G~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~  143 (307)
                      |...|+++|.+  +++|+++++|++|+.|..+ +..+  +|++++|.|||+++|+|  .|+++++++.+..
T Consensus       150 G~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~~--iD~~~~s~~K~l~~P~G--~g~l~v~~~~~~~  214 (378)
T PRK03080        150 GVRVPVARWIG--ADREGLTICDATSAAFALPLDWSK--LDVYTFSWQKVLGGEGG--HGMAILSPRAVER  214 (378)
T ss_pred             ceeccchhhcc--ccCCCeEEEecccccccCCCCHHH--CcEEEEehhhhCCCCCc--eEEEEECHHHHHh
Confidence            99999999999  8899999999999999988 6654  79999999999999999  9999999776543

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.83  E-value=1.4e-18  Score=154.31  Aligned_cols=265  Identities=17%  Similarity=0.115  Sum_probs=160.1

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC---------------CChHHHHhhcC----CCce
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---------------CDLDEVASAIG----PWTK   62 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------------~d~~~l~~~l~----~~~~   62 (307)
                      |+ .++.++++||| |++++|.|.++.    ..+...|++++.++.               .|+++|++.++    ++|+
T Consensus       105 A~~~~~~all~pGD-Vii~~p~~~~~~----~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk  179 (460)
T PRK13238        105 AEQILFPVLIKKGD-VVPSNYHFDTTR----AHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVP  179 (460)
T ss_pred             HHHHHHHHhCCCCC-EEccCCcccchH----HHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCcee
Confidence            45 45567899999 999999887776    445678999998875               36899999997    3799


Q ss_pred             EEEEeCCCCCcc-cccc---HHHHHHHHHHcCCEEEEeCccCCC-----------CcC-Ccc------CCCccEEEeccc
Q 021783           63 LVWVESPTNPRQ-QICD---IRKIAEMAHAHGALLLVDNSIMSP-----------VLS-RPL------ELGADIVMHSAT  120 (307)
Q Consensus        63 ~v~~~~~~n~tG-~~~~---~~~l~~~~~~~~~~li~D~a~~~~-----------~~~-~~~------~~~~d~~~~s~~  120 (307)
                      +|++++|+||+| .+++   +++|.++|++||+++|+|+++...           ... ...      ....|.++.|++
T Consensus       180 ~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~  259 (460)
T PRK13238        180 FIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAK  259 (460)
T ss_pred             EEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecc
Confidence            999999999998 6765   679999999999999999987431           111 111      124799999999


Q ss_pred             cccccCCCceeEEEEEcChhHHHHHHHHH----HhcC-CCCChhhHHHHhhccccH--HHHHHHHHHHHHHHHHHHhcCC
Q 021783          121 KFIAGHSDVMAGVLAVKGERLAKELYFLQ----NAEG-SGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASHP  193 (307)
Q Consensus       121 K~~~g~~g~~~G~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~~  193 (307)
                      |...++.   +|+++++++.+.+.+....    .... +..+...+.....+++..  ....+...++.+.+.+.|+.. 
T Consensus       260 K~g~~~~---GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~~~~~~~l~~~L~~~-  335 (460)
T PRK13238        260 KDAMVNI---GGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIGQVEYLGEGLEEA-  335 (460)
T ss_pred             cCCCCcc---eeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHHHHHHHHHHHHHHHC-
Confidence            9875654   6899988766666554442    1111 122222233333333221  222333444566777777653 


Q ss_pred             CccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH-------H-HHHHH-HhcCCcceeecCCCCccceeecccccCC
Q 021783          194 RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-------A-LSKHV-VETTKYFSITVSFGSVKSLISMPCFMSH  264 (307)
Q Consensus       194 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~-~~~l~~~gi~v~~g~~~~~~~~p~~~~~  264 (307)
                      ++. +..                ...+..+...+...       . ....+ ...+.+.||.+..++.|..-..|  ...
T Consensus       336 G~~-~~~----------------p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~--~~~  396 (460)
T PRK13238        336 GVP-IQT----------------PAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDP--KTG  396 (460)
T ss_pred             CCC-eEc----------------cCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCC--CCc
Confidence            110 000                11233444443221       0 12323 33345667777666654321111  000


Q ss_pred             CCCcHHHHHhcCCCCCeEEEEecc-----CChHHHHHHHHHHHh
Q 021783          265 ASIPVEVRQARGLTEDLVRISVGI-----EDVNDLISDLDKALR  303 (307)
Q Consensus       265 ~~~~~~~~~~~~~~~~~iRis~~~-----~~~~~~i~~l~~~l~  303 (307)
                              .......+.+|+.+.+     ++++++.+.|++..+
T Consensus       397 --------~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~  432 (460)
T PRK13238        397 --------EQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKE  432 (460)
T ss_pred             --------cccCCccceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence                    0001135789999965     778888888877653

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.83  E-value=8.5e-20  Score=154.29  Aligned_cols=128  Identities=24%  Similarity=0.314  Sum_probs=105.3

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-----------CChHHHHhhcC--CCceEEEEeCCCC
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----------CDLDEVASAIG--PWTKLVWVESPTN   71 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----------~d~~~l~~~l~--~~~~~v~~~~~~n   71 (307)
                      +++.++++|||+|+++.++|.+..    ..+...|+++++++.           .|++++++.++  ++++++++++| |
T Consensus        90 ~~l~al~~~gd~Vlv~~~~h~s~~----~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~  164 (294)
T cd00615          90 AVILAVCGPGDKILIDRNCHKSVI----NGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-T  164 (294)
T ss_pred             HHHHHcCCCCCEEEEeCCchHHHH----HHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-C
Confidence            566778999999999999999888    445567899888864           27899999985  57899999988 6


Q ss_pred             CccccccHHHHHHHHHHcCCEEEEeCccCCC-----CcC-CccCCCccEEEeccccccccCCCceeEEEEEcCh
Q 021783           72 PRQQICDIRKIAEMAHAHGALLLVDNSIMSP-----VLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        72 ~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~-----~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      ++|.+.|+++|.++|+++|+++++|++|+..     ..+ .....++|++++|+||+++|+++  +|++..+++
T Consensus       165 ~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~div~~S~hK~l~g~~~--~~~l~~~~~  236 (294)
T cd00615         165 YYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQSTHKTLPALTQ--GSMIHVKGD  236 (294)
T ss_pred             CCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcCCcEEEEchhcccchHhH--HHHHHhCCC
Confidence            8999999999999999999999999999742     223 34456899999999999976654  677777654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.82  E-value=7.5e-19  Score=155.14  Aligned_cols=244  Identities=19%  Similarity=0.195  Sum_probs=154.3

Q ss_pred             CC-CeEEEcCCCCcchHHHHhh---------hcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCcccccc----
Q 021783           13 TG-EEIVAGDDLYGGTDRLLSR---------VTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD----   78 (307)
Q Consensus        13 ~g-d~Vlv~~~~~~~~~~~~~~---------~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~----   78 (307)
                      +| ++|+..+++|.+.......         .....+.++..+|..|++++++.+.+++++|++++++||+|.+.+    
T Consensus       126 ~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aviiep~~~~~G~~~~~~~~  205 (398)
T PRK03244        126 TGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVDDDTAAVFLEPIQGEAGVVPPPAGY  205 (398)
T ss_pred             HCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhhcCCeEEEEEecccCCCCCcCCCHHH
Confidence            44 5677777777666422111         111223456677778999999998888999999999999999987    


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCC-CCc---C--CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhc
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMS-PVL---S--RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE  152 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~-~~~---~--~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~  152 (307)
                      +++|.++|++||+++|+||+|+. |..   .  .......|+  .+++|+++  +|++.|+++.+++ +.+.+.......
T Consensus       206 l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi--~t~sK~l~--~G~~ig~~~~~~~-~~~~~~~~~~~~  280 (398)
T PRK03244        206 LAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDV--VTLAKGLG--GGLPIGACLAFGP-AADLLTPGLHGS  280 (398)
T ss_pred             HHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCCE--EEEchhhh--CCcccEEEEEcHH-HHhhccCCCCcC
Confidence            89999999999999999999962 111   1  111223454  47899995  4788999999865 444443221222


Q ss_pred             CCCCChhhHHHHhhccccHH--HHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH
Q 021783          153 GSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  230 (307)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (307)
                      ....++..+..+...++.+.  ...+...+..+.+.+.|++..      ++...          ..++.+.++++.++..
T Consensus       281 t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~------~~~~~----------~v~g~g~~~~i~~~~~  344 (398)
T PRK03244        281 TFGGNPVACAAALAVLDTIASEGLLENAERLGEQLRAGIEALG------HPLVD----------HVRGRGLLLGIVLTAP  344 (398)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC------CCcee----------eEeeccEEEEEEEecc
Confidence            23344555555555554332  122333333444444444321      11000          1134578888888543


Q ss_pred             HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          231 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       231 ~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                       ....+.+.+..+|+.++...                           .+.+|++++.    +++++.++.|.++++++
T Consensus       345 -~~~~~~~~l~~~Gv~~~~~~---------------------------~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~  395 (398)
T PRK03244        345 -VAKAVEAAAREAGFLVNAVA---------------------------PDVIRLAPPLIITDAQVDAFVAALPAILDAA  395 (398)
T ss_pred             -HHHHHHHHHHHCCeEEeecC---------------------------CCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence             46778888888898775411                           2459999765    78888888888887654

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.81  E-value=3.6e-19  Score=154.04  Aligned_cols=249  Identities=14%  Similarity=0.086  Sum_probs=158.7

Q ss_pred             cHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHh-hcCCCceEEEEeCCCCCc
Q 021783            2 AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVAS-AIGPWTKLVWVESPTNPR   73 (307)
Q Consensus         2 aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~-~l~~~~~~v~~~~~~n~t   73 (307)
                      +|+ +++.+++.+||++++.....++..  |...++.+|.. +.+...      +..++++ .+++++++|.++|..|+|
T Consensus        78 ~~~Ea~~~nl~~~g~~~l~i~~G~fg~r--~~~~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~~~~~~V~~th~eTst  154 (360)
T PRK05355         78 LQFAMVPMNLLGGGKKADYVDTGSWSKK--AIKEAKKYGEV-NVAASSEDDGFTYIPPLDEWQLSDDAAYVHYTSNETID  154 (360)
T ss_pred             HHHHHHHHhcCCCCCeEEEEECCHHHHH--HHHHHHHhCCc-eEEecccccCCCCCCChhhccCCCCCCEEEEccCCCcc
Confidence            456 667789999999987666554554  34778888866 443321      2334444 777789999999999999


Q ss_pred             cccc-cHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH---H-
Q 021783           74 QQIC-DIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY---F-  147 (307)
Q Consensus        74 G~~~-~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~---~-  147 (307)
                      |... |+++|      +|+++++|++++.|..+ ++.++  |++++|.+|++ ||+|  .|+++++++.+.+...   . 
T Consensus       155 Gv~~~~i~~i------~g~l~vVDavss~g~~~idv~~~--d~~~~ssqK~l-gP~G--lg~l~~s~~~l~~~~~~~~~~  223 (360)
T PRK05355        155 GTEFHELPDT------GDVPLVADMSSDILSRPIDVSKF--GLIYAGAQKNI-GPAG--LTIVIVREDLLGRALPSIPSM  223 (360)
T ss_pred             eEecCccccc------CCCcEEEEcCccccCccCCHHHc--cEEEEeccccc-cCCc--eEEEEECHHHHhhcccCCChH
Confidence            9998 77766      89999999999999987 77765  59999999999 6999  9999999876644211   0 


Q ss_pred             ------HHH-hcCCCCChhhHHHHhhccc------cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhh
Q 021783          148 ------LQN-AEGSGLAPFDCWICLRGVK------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS  214 (307)
Q Consensus       148 ------~~~-~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~  214 (307)
                            ... ....+++....+....+++      .++.+.++..+.++.+.+.++..+..     ..+.. +       
T Consensus       224 ~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~-----~~~~~-~-------  290 (360)
T PRK05355        224 LDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFY-----RNPVA-P-------  290 (360)
T ss_pred             HHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCc-----ccCCC-h-------
Confidence                  011 1112333333333333332      34555666666777777777765410     00000 0       


Q ss_pred             hccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHH
Q 021783          215 QAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL  294 (307)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~  294 (307)
                      . ...+.+++|.+++.....++++.+...|+....|..                         ..+.+|+|+...+..+.
T Consensus       291 ~-~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~-------------------------~~g~vRiS~~~~nt~ee  344 (360)
T PRK05355        291 E-DRSRMNVPFTLADEELDKKFLAEAKAAGLVGLKGHR-------------------------SVGGMRASIYNAMPLEG  344 (360)
T ss_pred             h-hcCCcEEEEEcCChHHHHHHHHHHHHCCCcccCCCC-------------------------ccCcEEEECCCCCCHHH
Confidence            0 112367889887654345666666666775433221                         13569999987555555


Q ss_pred             HHHHHHHHh
Q 021783          295 ISDLDKALR  303 (307)
Q Consensus       295 i~~l~~~l~  303 (307)
                      ++.|.++|+
T Consensus       345 i~~l~~~l~  353 (360)
T PRK05355        345 VQALVDFMK  353 (360)
T ss_pred             HHHHHHHHH
Confidence            555555554

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.81  E-value=3.6e-19  Score=153.30  Aligned_cols=250  Identities=15%  Similarity=0.084  Sum_probs=161.3

Q ss_pred             cHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC---------CChHHHHhhcCCCceEEEEeCCCC
Q 021783            2 AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---------CDLDEVASAIGPWTKLVWVESPTN   71 (307)
Q Consensus         2 aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~d~~~l~~~l~~~~~~v~~~~~~n   71 (307)
                      .|+ +++..++++||++++...+.++..  |...++..|+ ++.+..         .++++++  +++++++|.++|..|
T Consensus        67 ~a~ea~~~nl~~~~~~~l~i~~G~fg~r--~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~th~ET  141 (349)
T TIGR01364        67 GQFAAVPLNLLAEGKVADYIVTGAWSKK--AAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--ISEDAAYVHYCANET  141 (349)
T ss_pred             HHHHHHHHhcCCCCCeEEEEECCHHHHH--HHHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CCCCCCEEEEcCCCC
Confidence            356 566778889999987776655555  4588888998 555552         2444444  356899999999999


Q ss_pred             CccccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH---
Q 021783           72 PRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF---  147 (307)
Q Consensus        72 ~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~---  147 (307)
                      .||...+     ++++.+++++++|++++.|..+ ++.++  |++++|.+|++ ||+|  .|+++++++.+.+....   
T Consensus       142 stGv~~~-----~l~~~~~~l~iVDavss~g~~~id~~~~--d~~~~ssqK~l-gP~G--lg~l~~s~~~~~~~~~~~~~  211 (349)
T TIGR01364       142 IHGVEFR-----ELPDVKNAPLVADMSSNILSRPIDVSKF--GLIYAGAQKNI-GPAG--LTVVIVRKDLLGRASRITPS  211 (349)
T ss_pred             cccEecc-----eecccCCCeEEEEccccccCccCCHHHc--cEEEEeccccc-CCCc--eEEEEECHHHHhhcccCCCC
Confidence            9999876     6777789999999999999987 77765  49999999999 6999  99999998766432110   


Q ss_pred             ---HH--H--hc-CCCCChhhHHHHhhccc------cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHh
Q 021783          148 ---LQ--N--AE-GSGLAPFDCWICLRGVK------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  213 (307)
Q Consensus       148 ---~~--~--~~-~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~  213 (307)
                         ..  .  .. ..+++....+....+++      .++.+.++..+.++.+.+.+++.+++   ......  +.     
T Consensus       212 ~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl---~~~~~~--~~-----  281 (349)
T TIGR01364       212 MLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGF---YRNPVD--PR-----  281 (349)
T ss_pred             cchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCe---eccCCC--HH-----
Confidence               01  0  11 11223233333333332      24555666666777777777766431   111000  00     


Q ss_pred             hhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHH
Q 021783          214 SQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVND  293 (307)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~  293 (307)
                         .....+++|.+++.....+++..+...|+++..|..                         ..+.+|+|+...+.++
T Consensus       282 ---~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~-------------------------~~g~vRvS~~~~nt~e  333 (349)
T TIGR01364       282 ---NRSRMNVVFTLGNEELEKRFLKEAEERGLVSLKGHR-------------------------SVGGMRASIYNAMPLE  333 (349)
T ss_pred             ---HcCCeEEEEecCChhHhHHHHHHHHHCCCcccCCcc-------------------------ccCeeEEECcCCCCHH
Confidence               112356888887543236666777778885555442                         1346999998766666


Q ss_pred             HHHHHHHHHhc
Q 021783          294 LISDLDKALRT  304 (307)
Q Consensus       294 ~i~~l~~~l~~  304 (307)
                      .++.|.++|++
T Consensus       334 did~l~~al~~  344 (349)
T TIGR01364       334 GVQALVDFMKE  344 (349)
T ss_pred             HHHHHHHHHHH
Confidence            66666555543

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK10534 L-threonine aldolase; Provisional

Probab=99.81  E-value=2.2e-18  Score=148.68  Aligned_cols=242  Identities=17%  Similarity=0.180  Sum_probs=147.3

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccC-CcEEEEecCC-----ChHHHHhhcCC------CceEEEEeCCCCC
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT-GVVVKRVNTC-----DLDEVASAIGP------WTKLVWVESPTNP   72 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~-----d~~~l~~~l~~------~~~~v~~~~~~n~   72 (307)
                      .++.+++++||+|+++.|.|...+..  ..+... +++++.++.+     |++++++++++      ++++|++++|+  
T Consensus        64 ~~l~~~~~~gd~vi~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--  139 (333)
T PRK10534         64 VALLSHCERGEEYIVGQAAHNYLYEA--GGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--  139 (333)
T ss_pred             HHHHHhcCCCCeeEEechhhhhHhcC--CchHHhcCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEecCC--
Confidence            44556789999999988877433211  001233 3677777543     78999998875      68999999765  


Q ss_pred             ccccccH---HHHHHHHHHcCCEEEEeCccCCCCc---C-Cc--cCCCccEEEeccccccccCCCceeEEEEEcChhHHH
Q 021783           73 RQQICDI---RKIAEMAHAHGALLLVDNSIMSPVL---S-RP--LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        73 tG~~~~~---~~l~~~~~~~~~~li~D~a~~~~~~---~-~~--~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~  143 (307)
                      +|.+.+.   ++|.++|++|++++++|++|.....   . ..  .....|.++.||||.++. +  .+|+++++ +.+.+
T Consensus       140 ~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~-~--~G~~~~~~-~~~i~  215 (333)
T PRK10534        140 NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGT-P--VGSLLVGN-RDYIK  215 (333)
T ss_pred             CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCC-c--ccceEEcC-HHHHH
Confidence            5999875   4566789999999999999763211   1 11  011246566789998853 3  24467665 44555


Q ss_pred             HHHHHHHhcCCCCC--hhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCc
Q 021783          144 ELYFLQNAEGSGLA--PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS  221 (307)
Q Consensus       144 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (307)
                      .+.......+...+  ...+......++.....+++..++++.+.+.|++.. +        +      +.    +..++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~r~~l~~~L~~~g-~--------~------~~----~~~~n  276 (333)
T PRK10534        216 RARRWRKMTGGGMRQAGILAAAGLYALKHNVARLQEDHDNAAWLAEQLREAG-A--------D------VM----RQDTN  276 (333)
T ss_pred             HHHHHHHHhCCchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCC-C--------c------cC----CCCce
Confidence            55554443332222  233444444444333444444455566777776531 1        0      01    11366


Q ss_pred             eEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec----cCChHHHHHH
Q 021783          222 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISD  297 (307)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~~~i~~  297 (307)
                      ++++++++. ....+.+.|.++||.++.|..                             +|++..    .++++++++.
T Consensus       277 fv~~~~~~~-~~~~~~~~l~~~gi~v~~~~~-----------------------------~rl~~~~r~t~e~~~~~~~~  326 (333)
T PRK10534        277 MLFVRVGEE-QAAALGEYMRERNVLINASPI-----------------------------VRLVTHLDVSREQLAEVVAH  326 (333)
T ss_pred             EEEEECCch-hHHHHHHHHHHcCeeecCCce-----------------------------EEEEEEeCCCHHHHHHHHHH
Confidence            777877642 366778888899999877542                             555443    3677777777


Q ss_pred             HHHHHh
Q 021783          298 LDKALR  303 (307)
Q Consensus       298 l~~~l~  303 (307)
                      |.+.+.
T Consensus       327 l~~~~~  332 (333)
T PRK10534        327 WRAFLA  332 (333)
T ss_pred             HHHHhc
Confidence            776653

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.81  E-value=2.4e-18  Score=162.54  Aligned_cols=131  Identities=18%  Similarity=0.192  Sum_probs=110.4

Q ss_pred             HHHHHhcCC-CC----eEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcC---CCceEEEEeCCCC
Q 021783            5 AAVTHLLGT-GE----EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG---PWTKLVWVESPTN   71 (307)
Q Consensus         5 ~~~~~~~~~-gd----~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~---~~~~~v~~~~~~n   71 (307)
                      .++.++.++ ||    +|+++..+|.++..+|.    ..|++++.++.+     |+++|++.++   +++++|++++|+|
T Consensus       602 ~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~----~~G~~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn  677 (993)
T PLN02414        602 MVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAA----MCGMKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPST  677 (993)
T ss_pred             HHHHHHHhccCCCCCCEEEeCCCcCccCHHHHH----HCCCEEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCc
Confidence            455666665 88    89999999999995543    479999999974     8999999998   4789999999999


Q ss_pred             CccccccHHHHHHHHHHcCCEEEEeCccCCCCc--CCccCCCccEEEeccccccccCCC---ceeEEEEEcCh
Q 021783           72 PRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL--SRPLELGADIVMHSATKFIAGHSD---VMAGVLAVKGE  139 (307)
Q Consensus        72 ~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~--~~~~~~~~d~~~~s~~K~~~g~~g---~~~G~~~~~~~  139 (307)
                      .+|...|+++|.++||++|+++++|+++..+..  ..+.++|+|++++|.||+|++|.|   --.|++.+++.
T Consensus       678 ~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~  750 (993)
T PLN02414        678 HGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH  750 (993)
T ss_pred             cccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchh
Confidence            999999999999999999999999999987663  377889999999999998864432   11789988864

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.80  E-value=3.5e-18  Score=136.99  Aligned_cols=263  Identities=17%  Similarity=0.139  Sum_probs=175.6

Q ss_pred             cHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcC-CCceEEEEeCCCCCcc
Q 021783            2 AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG-PWTKLVWVESPTNPRQ   74 (307)
Q Consensus         2 aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~-~~~~~v~~~~~~n~tG   74 (307)
                      +++ +++.+++.|||+|++-...-.+..  +...+++.|+++..++.+     .++.+.+.+. .++++++++|..+.||
T Consensus        79 ~g~E~al~N~lePgd~vLv~~~G~wg~r--a~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTg  156 (385)
T KOG2862|consen   79 SGWEAALVNLLEPGDNVLVVSTGTWGQR--AADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTG  156 (385)
T ss_pred             chHHHHHHhhcCCCCeEEEEEechHHHH--HHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCcccc
Confidence            455 566678999999997665443554  337789999999998764     7899998886 7899999999999999


Q ss_pred             cccc-HHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH------
Q 021783           75 QICD-IRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY------  146 (307)
Q Consensus        75 ~~~~-~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~------  146 (307)
                      +..| ++.+-++||+|++++++|.+.+.|..+ .+++||+|+.....+|.+++|+|  .+.+..++......-.      
T Consensus       157 V~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~aP~G--LsiisfS~ka~~~~~~rK~~~~  234 (385)
T KOG2862|consen  157 VLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGAPAG--LSIISFSDKALEAIRDRKTKPV  234 (385)
T ss_pred             ccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhhcccEEEecchhhcCCCCC--cceeecCHHHHHHHhhccCCce
Confidence            9999 888999999999999999999988877 89999999999999999999999  6777777654433211      


Q ss_pred             -------HHHHhcC---------CCCChhhHHHHhhc-----cccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCC
Q 021783          147 -------FLQNAEG---------SGLAPFDCWICLRG-----VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE  205 (307)
Q Consensus       147 -------~~~~~~~---------~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~  205 (307)
                             ...+..+         .+.+....+....+     -+.++++++++.++.+.+...++....-.-+..+.+  
T Consensus       235 ~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~--  312 (385)
T KOG2862|consen  235 SFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQLFVVDEEL--  312 (385)
T ss_pred             EEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceecChhh--
Confidence                   1111111         11222222222222     345678889999999999888886421100001100  


Q ss_pred             CCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcc-eeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEE
Q 021783          206 HPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI  284 (307)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRi  284 (307)
                                  .......+.++..-+-.++..++..+ ++...-|.. ..                      ..-.+||
T Consensus       313 ------------rlptvttv~vp~gvDw~dVv~~~~~~~~vei~gglg-~~----------------------~gKv~RI  357 (385)
T KOG2862|consen  313 ------------RLPTVTTVKVPYGVDWKDVVAYAMSHYVVEIGGGLG-PT----------------------VGKVFRI  357 (385)
T ss_pred             ------------ccCcceeeecCCCCCHHHHHHHHHHhcCEEeccccC-CC----------------------cccEEEE
Confidence                        01223334443222344555554444 333332221 10                      1345999


Q ss_pred             Eec-----cCChHHHHHHHHHHHhcC
Q 021783          285 SVG-----IEDVNDLISDLDKALRTG  305 (307)
Q Consensus       285 s~~-----~~~~~~~i~~l~~~l~~~  305 (307)
                      .+-     .+.++..++.+..++++.
T Consensus       358 Gl~gcna~~e~i~~v~~ll~~alq~~  383 (385)
T KOG2862|consen  358 GLLGCNANVEYIDNVVELLKLALQRK  383 (385)
T ss_pred             EEeeccCCcHHHHHHHHHHHHHHhhc
Confidence            872     377888888888888764

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.80  E-value=3.9e-18  Score=150.09  Aligned_cols=249  Identities=14%  Similarity=0.156  Sum_probs=152.4

Q ss_pred             cCCCC----eEEEcCCCCcchHHHHhhhccc------C---CcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccc
Q 021783           11 LGTGE----EIVAGDDLYGGTDRLLSRVTPK------T---GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus        11 ~~~gd----~Vlv~~~~~~~~~~~~~~~~~~------~---g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~   77 (307)
                      ..+||    +|++.++.|++...........      +   ...+..++.+|++++++.+++++++|+++.++|++|...
T Consensus       113 ~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~avivep~~~~~G~~~  192 (389)
T PRK01278        113 YGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITPNTAAILIEPIQGEGGIRP  192 (389)
T ss_pred             HhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCCCeEEEEEecccCCCCCcC
Confidence            45676    8999999988775332211100      0   011234566799999999988999999999999998443


Q ss_pred             ----cHHHHHHHHHHcCCEEEEeCccCC-CCcC---CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           78 ----DIRKIAEMAHAHGALLLVDNSIMS-PVLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        78 ----~~~~l~~~~~~~~~~li~D~a~~~-~~~~---~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                          .+++|.++|++||+++|+|++|.. +...   .....+.+.-+.|++|.++  +|.++|+++++++ +.+.+....
T Consensus       193 ~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~--~G~~ig~~~~~~~-~~~~~~~~~  269 (389)
T PRK01278        193 APDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMAVAKGIG--GGFPLGACLATEE-AAKGMTPGT  269 (389)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEEEEehhcc--CCcceEEEEEcHH-HHhccCCCC
Confidence                499999999999999999999972 2111   1112233333568999995  5788999999855 433333222


Q ss_pred             HhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEe
Q 021783          150 NAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  227 (307)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  227 (307)
                      .......++..+..+.+.++.+..  ..+...+..+.+.+.++...       .   ..+.+  + ...++.+.++++.+
T Consensus       270 ~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~l~-------~---~~~~~--~-~~v~g~G~~~~i~~  336 (389)
T PRK01278        270 HGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLV-------D---RFPDV--I-EEVRGKGLLLGLKC  336 (389)
T ss_pred             CCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-------h---hCCCc--e-eeEecccEEEEEEE
Confidence            222334555666666666654421  12333334444444443211       0   01100  0 01133566777766


Q ss_pred             CCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHh
Q 021783          228 GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALR  303 (307)
Q Consensus       228 ~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~  303 (307)
                      ..  ....+.+.|..+||.+.++.                           ++++|++++.    +++++.++.|.++++
T Consensus       337 ~~--~~~~~~~~l~~~GV~~~p~~---------------------------~~~lR~~p~~~~~~~~i~~~l~~l~~~l~  387 (389)
T PRK01278        337 VV--PNRDLVQALRDEGLLTVGAG---------------------------DNVVRLLPPLIITEEEIDEALERLERAAE  387 (389)
T ss_pred             ec--CHHHHHHHHHHCCeEEeecC---------------------------CCEEEEeCCcccCHHHHHHHHHHHHHHHH
Confidence            43  35677777777788765432                           3459999753    678888888888776


Q ss_pred             c
Q 021783          304 T  304 (307)
Q Consensus       304 ~  304 (307)
                      +
T Consensus       388 ~  388 (389)
T PRK01278        388 S  388 (389)
T ss_pred             h
Confidence            5

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.79  E-value=2.7e-17  Score=145.40  Aligned_cols=241  Identities=18%  Similarity=0.174  Sum_probs=150.8

Q ss_pred             CeEEEcCCCCcchHHHHhhh---------cccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCcccccc----HHH
Q 021783           15 EEIVAGDDLYGGTDRLLSRV---------TPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD----IRK   81 (307)
Q Consensus        15 d~Vlv~~~~~~~~~~~~~~~---------~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~----~~~   81 (307)
                      ++|++.+..|.+........         .......+..++..|++++++.+.+++++|++++++||+|.+.+    +++
T Consensus       133 ~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~  212 (401)
T PRK00854        133 AEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPFGDAEALEAAITPNTVAFLVEPIQGEAGVIIPPAGYFTR  212 (401)
T ss_pred             ceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCCCCHHHHHHHhCCCeEEEEEccccCCCCCcCCCHHHHHH
Confidence            67777776665543221111         11122456677888999999999989999999999999999986    999


Q ss_pred             HHHHHHHcCCEEEEeCccC-CCCcCC-----ccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCC
Q 021783           82 IAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  155 (307)
Q Consensus        82 l~~~~~~~~~~li~D~a~~-~~~~~~-----~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~  155 (307)
                      |.++|++||+++|+|++|+ .+....     ......|+++.  +|++++ ...++|+++++++.. +.+..........
T Consensus       213 l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~--~K~l~g-g~~~ig~v~~~~~~~-~~l~~~~~~~t~~  288 (401)
T PRK00854        213 VRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLI--GKALSG-GFYPVSAVLSNSEVL-GVLKPGQHGSTFG  288 (401)
T ss_pred             HHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEe--cccccC-CccCeEEEEEcHHHH-hcccCCCCCCCCC
Confidence            9999999999999999997 332211     11223577764  699954 335789999986543 3332211222223


Q ss_pred             CChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEe-CCHHH
Q 021783          156 LAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLAL  232 (307)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  232 (307)
                      .++..++.....++.+..  ..+...+..+.+.+.|+....      ...          ...++.+.++.+.+ ++...
T Consensus       289 ~~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~~L~~~~~------~~~----------~~~~g~g~~~~i~~~~~~~~  352 (401)
T PRK00854        289 GNPLACAVARAALKVLTEEGMIENAAEMGAYFLEGLRSIRS------NIV----------REVRGRGLMLAVELEPEAGG  352 (401)
T ss_pred             cCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhcc------Cce----------EEEeccceEEEEEEecCchh
Confidence            456667777777765533  233334444445555543210      000          01133567777766 33234


Q ss_pred             HHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHH
Q 021783          233 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKAL  302 (307)
Q Consensus       233 ~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l  302 (307)
                      ...+.+.|..+||.+...                           ..+++|++++.    +++++.++.|.+.+
T Consensus       353 ~~~~~~~L~~~GV~v~~~---------------------------~~~~lR~~p~~~~t~e~i~~~i~~l~~~l  399 (401)
T PRK00854        353 ARQYCEALKERGLLAKDT---------------------------HDHTIRLAPPLVITREQVDWALEQIAKVL  399 (401)
T ss_pred             HHHHHHHHHHCCeEEecC---------------------------CCCEEEEeCCcccCHHHHHHHHHHHHHHh
Confidence            678888888888876421                           13469999865    56666666666655

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.79  E-value=4.4e-17  Score=142.98  Aligned_cols=183  Identities=19%  Similarity=0.167  Sum_probs=122.8

Q ss_pred             cHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC---------------CChHHHHhhcCCC----c
Q 021783            2 AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---------------CDLDEVASAIGPW----T   61 (307)
Q Consensus         2 aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------------~d~~~l~~~l~~~----~   61 (307)
                      +|+ .++.++++|||+| +++|.|.++.    ..+...|++++.++.               .|+++|++.++++    +
T Consensus        79 ~Al~la~~al~~pGD~V-~~~~~f~~~~----~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~  153 (431)
T cd00617          79 GAENILFSILLKPGRTV-PSNMHFDTTR----GHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENI  153 (431)
T ss_pred             HHHHHHHHHhCCCCCEE-ccCCcccchH----HHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCc
Confidence            355 5566789999988 5888888777    556788999998876               2689999999854    8


Q ss_pred             eEEEEeCCCCCc-ccccc---HHHHHHHHHHcCCEEEEeCccCCC-----------CcC-Ccc------CCCccEEEecc
Q 021783           62 KLVWVESPTNPR-QQICD---IRKIAEMAHAHGALLLVDNSIMSP-----------VLS-RPL------ELGADIVMHSA  119 (307)
Q Consensus        62 ~~v~~~~~~n~t-G~~~~---~~~l~~~~~~~~~~li~D~a~~~~-----------~~~-~~~------~~~~d~~~~s~  119 (307)
                      ++|+++.|+||+ |.+++   +++|.++|++||+++|+|+++...           ... ...      ....|.++.|+
T Consensus       154 ~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~  233 (431)
T cd00617         154 PYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSA  233 (431)
T ss_pred             cEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEe
Confidence            899999999998 88885   668899999999999999996532           111 111      12478999999


Q ss_pred             ccccccCCCceeEEEEEcChhHHHHHHHHH-HhcC----CCCChhhHHHHhhccccH--HHHHHHHHHHHHHHHHHHhcC
Q 021783          120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NAEG----SGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       120 ~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~  192 (307)
                      +|..+.+.   +|+++++++.+.+.+.... ...+    ..++.........+++..  ....++..++.+.+.+.|++.
T Consensus       234 ~K~~~~~~---GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l~~~~~~r~~l~~~L~~~  310 (431)
T cd00617         234 KKDGLVNI---GGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYLRHRVEQVRYLGDRLDEA  310 (431)
T ss_pred             ecCCCCcc---ceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC
Confidence            99875543   7899999876666554322 1111    122222222222244221  233444455556677777654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PLN02271 serine hydroxymethyltransferase

Probab=99.78  E-value=7.2e-17  Score=142.21  Aligned_cols=185  Identities=19%  Similarity=0.269  Sum_probs=127.8

Q ss_pred             cHHHHHHHhcCCCCeEEEcCCCCcchHHHHh-----hhcccCCcEEEEec--CC------ChHHHHh-hcCCCceEEEEe
Q 021783            2 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLS-----RVTPKTGVVVKRVN--TC------DLDEVAS-AIGPWTKLVWVE   67 (307)
Q Consensus         2 aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~-----~~~~~~g~~~~~v~--~~------d~~~l~~-~l~~~~~~v~~~   67 (307)
                      |..+++.++++|||+|+..+..|+++.....     ..+...|..+..++  .+      |.+++++ +...++|+|++.
T Consensus       226 AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII~g  305 (586)
T PLN02271        226 ANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICG  305 (586)
T ss_pred             HHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhhcCCeEEEEC
Confidence            4457788899999999999988887764321     12344565555544  32      8899998 556899999998


Q ss_pred             CCCCCccccccHHHHHHHHHHcCCEEEEeCccCCCCcC-----CccCCCccEEEeccccccccCCCceeEEEEEcChh--
Q 021783           68 SPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER--  140 (307)
Q Consensus        68 ~~~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~--  140 (307)
                      +..+|  ...|++++.++|+++|+++++|.+|..|.+.     ++.. ++|++++|+|||+.||.|   |+++++++.  
T Consensus       306 ~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~-~aDvvt~TTHKtLrGPrG---G~I~~r~~~~~  379 (586)
T PLN02271        306 GSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFD-YCDIVTSTTHKSLRGPRG---GIIFYRKGPKL  379 (586)
T ss_pred             chhcc--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCc-CCcEEEeCCcccCCCCCc---eEEEecccccc
Confidence            87887  7789999999999999999999999987764     2333 599999999999999885   777776531  


Q ss_pred             -----------------HHHHHHHHH-H-hcCCCCChhhH----HHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 021783          141 -----------------LAKELYFLQ-N-AEGSGLAPFDC----WICLRGVKTMALRVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       141 -----------------~~~~~~~~~-~-~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~  192 (307)
                                       ..+.+.... + ..++......+    .+.......+....++..+|++.|.+.|.++
T Consensus       380 ~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~  454 (586)
T PLN02271        380 RKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRR  454 (586)
T ss_pred             cccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC
Confidence                             212111111 1 11111111111    1111123355777888999999999999866

>PRK07505 hypothetical protein; Provisional

Probab=99.78  E-value=4.8e-17  Score=143.70  Aligned_cols=225  Identities=14%  Similarity=0.109  Sum_probs=134.9

Q ss_pred             CCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCccCCCCc---------CCcc
Q 021783           38 TGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL---------SRPL  108 (307)
Q Consensus        38 ~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~---------~~~~  108 (307)
                      .+.+++.+|.+|++++++.+.++++++++++|+||+|.+.++++|.++|++||+++|+|++|+.+.+         ....
T Consensus       157 ~~~~v~~~~~~d~~~l~~~~~~~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~  236 (402)
T PRK07505        157 DETEVETIDHNDLDALEDICKTNKTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELD  236 (402)
T ss_pred             cCCeEEEeCCCCHHHHHHHHhcCCCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcC
Confidence            3578899999999999999987788999999999999999999999999999999999999853211         1111


Q ss_pred             --CCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcC--CCCChhhHHHHhhccccHHHHHHHHHHHHHH
Q 021783          109 --ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG--SGLAPFDCWICLRGVKTMALRVEKQQDNAQK  184 (307)
Q Consensus       109 --~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  184 (307)
                        ..+.+++++|++|.+++ +   +|+++..++.+.+.+........  ..++......+...++.+.  .+...+....
T Consensus       237 ~~~~d~~i~~~s~sK~~~~-~---Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~--~~~~~~~~~~  310 (402)
T PRK07505        237 YRLNERTIIAASLGKAFGA-S---GGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHL--SEELDQLQQK  310 (402)
T ss_pred             CCCCCCeEEEEechhhhhc-c---CeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHh--ccCcHHHHHH
Confidence              22456888999999953 3   57777655556555544322211  1222233333333332111  0111111222


Q ss_pred             HHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCC-ceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccC
Q 021783          185 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG-SVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS  263 (307)
Q Consensus       185 l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~  263 (307)
                      +.+.++..+..   ..             ...++.+ .+..+.+++.+...++.+.|.++||.++....      |.   
T Consensus       311 l~~~~~~~~~~---~~-------------~~~~g~~~~i~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~------p~---  365 (402)
T PRK07505        311 LQNNIALFDSL---IP-------------TEQSGSFLPIRLIYIGDEDTAIKAAKQLLDRGFYTSPVFF------PV---  365 (402)
T ss_pred             HHHHHHHHHHH---HH-------------hcCCCCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEeeecC------CC---
Confidence            22222211000   00             0001122 23344445444477888888889998876432      10   


Q ss_pred             CCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          264 HASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                                 .+..++++|++++.    ++++++++.|.+++++
T Consensus       366 -----------~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~  399 (402)
T PRK07505        366 -----------VAKGRAGLRIMFRASHTNDEIKRLCSLLKEILDE  399 (402)
T ss_pred             -----------CCCCCceEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence                       00123579999974    6777777777776643

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.78  E-value=1.4e-17  Score=146.32  Aligned_cols=242  Identities=17%  Similarity=0.159  Sum_probs=144.8

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhc---------ccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccc----cH
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVT---------PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC----DI   79 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~---------~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~----~~   79 (307)
                      +||+|++++++|..+........         .....+...++.+|++++++.+++++++|++++++|++|...    ++
T Consensus       114 ~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~p~~~~~g~~~~~~~~l  193 (379)
T TIGR00707       114 EKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDETAAVIVEPIQGEGGVNPASAEFL  193 (379)
T ss_pred             CCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhCeeEEEEEccccCCCCccCCHHHH
Confidence            37999999999865542211110         111123445556689999999988899999998888888643    38


Q ss_pred             HHHHHHHHHcCCEEEEeCccC-CCCcCC-----ccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcC
Q 021783           80 RKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  153 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~-~~~~~~-----~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~  153 (307)
                      ++|.++|+++|+++|+|++|+ .+....     ......|+  .++||.+ + +|.|+|+++++++ +.+.+........
T Consensus       194 ~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~--~t~sK~~-~-~G~riG~~~~~~~-~~~~~~~~~~~~~  268 (379)
T TIGR00707       194 KALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDI--ITLAKGL-G-GGVPIGATLAKEE-VAEAFTPGDHGST  268 (379)
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCE--EEEcccc-c-CCcccEEEEEcHH-HHhhhcCCCCCCC
Confidence            999999999999999999996 221111     11122354  4689999 4 6889999998754 4444432212222


Q ss_pred             CCCChhhHHHHhhccccHH--HHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHH
Q 021783          154 SGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA  231 (307)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (307)
                      ...++..+..+.+.++.+.  ...+...+..+.+.+.+++...  .   ....          ..++.+.++++.+++. 
T Consensus       269 ~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~---~~~~----------~~~~~g~~~~~~~~~~-  332 (379)
T TIGR00707       269 FGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLEELGK--N---YPNK----------EVRGKGLMLGIELEAP-  332 (379)
T ss_pred             CCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--h---CCCC----------ccccCceEEEEEecCc-
Confidence            2344455555555554332  2234444555555555543210  0   0000          0122466788887542 


Q ss_pred             HHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 021783          232 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  303 (307)
Q Consensus       232 ~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  303 (307)
                       ...+.+.|.+.||.++++.                           .+++|++++....++.++.+.+.|+
T Consensus       333 -~~~~~~~l~~~Gv~v~~~~---------------------------~~~lRi~~~~~~t~~~i~~~~~~l~  376 (379)
T TIGR00707       333 -CKDIVKKALEKGLLVNCAG---------------------------PKVLRFLPPLIITKEEIDEAVSALE  376 (379)
T ss_pred             -HHHHHHHHHHCCcEEeeCC---------------------------CCEEEEECCCcCCHHHHHHHHHHHH
Confidence             5678888888898776522                           2459999865444444444444443

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK02769 histidine decarboxylase; Provisional

Probab=99.78  E-value=2.7e-17  Score=142.72  Aligned_cols=174  Identities=19%  Similarity=0.253  Sum_probs=124.4

Q ss_pred             cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCC---ceEEEEeCCCCCccccccHHHH
Q 021783           11 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPW---TKLVWVESPTNPRQQICDIRKI   82 (307)
Q Consensus        11 ~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~---~~~v~~~~~~n~tG~~~~~~~l   82 (307)
                      ..++++|++++.+|++..    ..++..|.+.+.++.+     |+++|++.++++   |.+|++++++|++|.+.|+++|
T Consensus       107 ~~~~~~ii~s~~~H~Sv~----ka~~~lg~~~~~V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I  182 (380)
T PRK02769        107 LFPDGTLYYSKDTHYSVS----KIARLLRIKSRVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEI  182 (380)
T ss_pred             hCCCcEEEeCCCceehHH----HHHHHcCCCCceeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHH
Confidence            367899999999999988    4445556665556542     899999999765   9999999999999999999999


Q ss_pred             HHHHHHcC---CEEEEeCccCCCCcC--------CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH--
Q 021783           83 AEMAHAHG---ALLLVDNSIMSPVLS--------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--  149 (307)
Q Consensus        83 ~~~~~~~~---~~li~D~a~~~~~~~--------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~--  149 (307)
                      .++|+++|   +++++|+||+.+..+        +... ++|.++.|+||++++|.|  +|+++.+++.+........  
T Consensus       183 ~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~-~vDsis~s~HK~~~~P~g--~G~l~~r~~~~~~~~~~~~yl  259 (380)
T PRK02769        183 QEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFAD-GIDSIAISGHKFIGSPMP--CGIVLAKKKYVERISVDVDYI  259 (380)
T ss_pred             HHHHHHhCCCceEEEEEecccceeecccCccccCCccC-CCCEEEECCcccCCCCCC--cEEEEEehhhhhhcccCcccc
Confidence            99999998   699999999987663        2223 899999999999977999  9999999765433211000  


Q ss_pred             -----HhcCCCC--ChhhHHHHhhcc--ccHHHHHHHHHHHHHHHHHHHhc
Q 021783          150 -----NAEGSGL--APFDCWICLRGV--KTMALRVEKQQDNAQKIAEFLAS  191 (307)
Q Consensus       150 -----~~~~~~~--~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~  191 (307)
                           ...|+..  .....|..+..+  ..+....+...+.++++.+.++.
T Consensus       260 ~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~  310 (380)
T PRK02769        260 GSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQA  310 (380)
T ss_pred             CCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 0112221  123344333322  33455556666667777777754

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.78  E-value=2.3e-18  Score=149.33  Aligned_cols=249  Identities=17%  Similarity=0.163  Sum_probs=150.0

Q ss_pred             HH-HHHHHhcC---CCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------C-hHHHHhhcCCCceEEEEeCCCC
Q 021783            3 AL-AAVTHLLG---TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------D-LDEVASAIGPWTKLVWVESPTN   71 (307)
Q Consensus         3 al-~~~~~~~~---~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d-~~~l~~~l~~~~~~v~~~~~~n   71 (307)
                      |+ .++..+++   +||+|++..  |   ..-+...++..|++++.++.+      + ++..+..+++++++|.++|.+|
T Consensus        75 a~~~~~~~l~~~~~~~~~i~~g~--~---~~~~~~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lV~~~h~~t  149 (355)
T cd00611          75 QFAAVPLNLLGDKGTADYVVTGA--W---SAKAAKEAKRYGGVVVIVAAKEEGKYTKIPDVETWDLAPDAAYVHYCSNET  149 (355)
T ss_pred             HHHHHHHhcCCCCCeEEEEECCH--H---HHHHHHHHHhcCCCcEEEecccccCCCCCCCHhhcCCCCCCCEEEEeCCcc
Confidence            45 44555666   566665422  2   222234668889988888753      3 3333355678999999999999


Q ss_pred             CccccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH---
Q 021783           72 PRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF---  147 (307)
Q Consensus        72 ~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~---  147 (307)
                      .||...+     ++++.||+++++|++++.|..+ ++.+++  +++.|.||++ ||+|  .|+++++++.+.+....   
T Consensus       150 ~tG~~~~-----~i~~~~g~~~~VDa~qs~g~~~idv~~~~--~~~ss~~K~l-GP~G--~g~l~~~~~~~~~~~~~~~~  219 (355)
T cd00611         150 IHGVEFD-----EVPDTGGVPLVADMSSNILSRPIDVSKFG--VIYAGAQKNL-GPAG--VTVVIVRKDLLGKARKITPS  219 (355)
T ss_pred             cccEEcc-----eecccCCCeEEEEccccccCCCCCHHHhC--EEEeeccccc-CCCc--eEEEEECHHHHhhcccCCCC
Confidence            9999843     4555699999999999999988 777765  4667799998 6999  99999997765432110   


Q ss_pred             ---HHH--hc---CCCCChhhHHHHhhcccc------HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHh
Q 021783          148 ---LQN--AE---GSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  213 (307)
Q Consensus       148 ---~~~--~~---~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~  213 (307)
                         ...  ..   ..+++....+...++++.      ++.+.++..+.++.+.+.+++.+++    +...          
T Consensus       220 ~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl----~~~~----------  285 (355)
T cd00611         220 MLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGF----YRGP----------  285 (355)
T ss_pred             cccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccc----cccC----------
Confidence               000  01   122222233333334432      3444455556666666667665421    1000          


Q ss_pred             hhccCCC-ceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChH
Q 021783          214 SQAKGAG-SVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVN  292 (307)
Q Consensus       214 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~  292 (307)
                      ..+..+. .+++|.+++......+.+.+...|+....|..                         ..+.+|+|++..+.+
T Consensus       286 ~~~~~rs~~vvsf~~~~~~l~~~~~~~~~r~G~~~~~~~~-------------------------~~g~vR~S~~~~nt~  340 (355)
T cd00611         286 VDKRARSRMNVPFRLGKEELEKEFLKEAEAAGMIGLKGHR-------------------------SVGGIRASIYNALSL  340 (355)
T ss_pred             CCHHHcCceEEEEEcCChhhhHHHHHHHHHCCCcccCCCc-------------------------ccCeEEEEccCCCCH
Confidence            0001123 56889887642123443444445554222210                         135699999987778


Q ss_pred             HHHHHHHHHHhcC
Q 021783          293 DLISDLDKALRTG  305 (307)
Q Consensus       293 ~~i~~l~~~l~~~  305 (307)
                      +.++.|.++|+++
T Consensus       341 edi~~l~~al~~~  353 (355)
T cd00611         341 EGVQALADFMKEF  353 (355)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888887777653

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.78  E-value=8.7e-18  Score=148.40  Aligned_cols=244  Identities=16%  Similarity=0.227  Sum_probs=148.0

Q ss_pred             CeEEEcCCCCcchHHHHhhhcc---------cCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccc-ccc---HHH
Q 021783           15 EEIVAGDDLYGGTDRLLSRVTP---------KTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQ-ICD---IRK   81 (307)
Q Consensus        15 d~Vlv~~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~-~~~---~~~   81 (307)
                      ++|++.++.|............         .....+..++.+|++++++.+.+++++|++++++||+|. ..+   +++
T Consensus       128 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~vii~p~~~~~G~~~~~~~~l~~  207 (396)
T PRK02627        128 PEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKAAITDKTAAVMLEPIQGEGGVNPADKEYLQA  207 (396)
T ss_pred             CeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCCCHHHHHHhcCCCeEEEEEecccCCCCCccCCHHHHHH
Confidence            7899999888655422111110         001123445666999999999889999999999999994 443   899


Q ss_pred             HHHHHHHcCCEEEEeCccC-CCCc---CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCC
Q 021783           82 IAEMAHAHGALLLVDNSIM-SPVL---SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  157 (307)
Q Consensus        82 l~~~~~~~~~~li~D~a~~-~~~~---~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  157 (307)
                      |.++|++||+++|+|++|+ .+..   ......+.+.-+.++||.++  +|+++|+++++++ +.+.+...........+
T Consensus       208 l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~t~sK~~~--~G~rig~~~~~~~-~~~~~~~~~~~~t~~~~  284 (396)
T PRK02627        208 LRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIMTLAKGLG--GGVPIGAVLAKEK-VADVFTPGDHGSTFGGN  284 (396)
T ss_pred             HHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCEEEEcchhh--CCcccEEEEEcHH-HHhccCCCCCCCCCCCC
Confidence            9999999999999999997 2221   11112233222457999994  5889999999855 44433322122223345


Q ss_pred             hhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHH
Q 021783          158 PFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKH  235 (307)
Q Consensus       158 ~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (307)
                      +..+..+...++.+..  ..++..+..+.+.+.+.+...  .  ++...          ..++.+.++++.+..  ....
T Consensus       285 ~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~--~~~~~----------~~~~~g~~~~i~~~~--~~~~  348 (396)
T PRK02627        285 PLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRELLE--K--YPGIK----------EVRGLGLMIGIELDR--PAAE  348 (396)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH--h--CCCee----------eeccCcEEEEEEecC--cHHH
Confidence            5566666665553322  123333334444444432210  0  01110          113356778888732  3667


Q ss_pred             HHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          236 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       236 ~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                      +.+.+..+||.+.++.                           .+++|++++.    +++++.++.|.+++++
T Consensus       349 ~~~~l~~~Gv~v~~~~---------------------------~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~  394 (396)
T PRK02627        349 IVKKALEKGLLINVTG---------------------------DNVLRLLPPLIISKEEIDEAVDRLEEVLKE  394 (396)
T ss_pred             HHHHHHHCCeEEeecC---------------------------CCEEEEECCcccCHHHHHHHHHHHHHHHHh
Confidence            7788877788776532                           2459998753    6777888888777764

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.77  E-value=7.2e-17  Score=143.79  Aligned_cols=259  Identities=19%  Similarity=0.150  Sum_probs=152.4

Q ss_pred             cHHHHHHHhcCCCCeEEEcCC---CCcchHHHHhhhcccCCcEEE----EecCC------ChHHHHhhcC-CCceEEEEe
Q 021783            2 AALAAVTHLLGTGEEIVAGDD---LYGGTDRLLSRVTPKTGVVVK----RVNTC------DLDEVASAIG-PWTKLVWVE   67 (307)
Q Consensus         2 aal~~~~~~~~~gd~Vlv~~~---~~~~~~~~~~~~~~~~g~~~~----~v~~~------d~~~l~~~l~-~~~~~v~~~   67 (307)
                      |+++++.++++|||+|+..+.   .|.+..... ...+..+....    .+.++      |.+++++.+. .++++|++.
T Consensus       112 AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~-~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv~~  190 (475)
T PLN03226        112 ANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQT-DGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAG  190 (475)
T ss_pred             HHHHHHHHhCCCCCEEEECCCCcCcchhhhhhh-cccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEEEe
Confidence            455788899999999998553   333322111 11122222211    23334      8999999886 577776653


Q ss_pred             CCCCCccccccHHHHHHHHHHcCCEEEEeCccCCCCcC-C----ccCCCccEEEeccccccccCCCceeEEEEEcChhHH
Q 021783           68 SPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-R----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  142 (307)
Q Consensus        68 ~~~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~----~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~  142 (307)
                       .+ .+|...|+++|.++|+++|+++++|++|+.|... .    +.. ++|++++|+|||+.||.   +|+++++++...
T Consensus       191 -~S-~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~-~~Div~~t~hK~L~GP~---Gg~I~~~~~~~~  264 (475)
T PLN03226        191 -AS-AYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFE-YCDVVTTTTHKSLRGPR---GGMIFFRKGPKP  264 (475)
T ss_pred             -cC-cCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCC-CCeEEEecCcccccCCC---ceEEEEchhhcc
Confidence             23 3678889999999999999999999999988764 2    222 69999999999998887   588888764220


Q ss_pred             ----------HH--HHHHHH--hcCCCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCC
Q 021783          143 ----------KE--LYFLQN--AEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL  203 (307)
Q Consensus       143 ----------~~--~~~~~~--~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l  203 (307)
                                +.  ......  ...+++..........+++     .+....++..++++.+.+.+.+. ++ .+...+ 
T Consensus       265 ~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~-G~-~l~~~~-  341 (475)
T PLN03226        265 PKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSK-GY-KLVTGG-  341 (475)
T ss_pred             cccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhC-CC-EEEcCC-
Confidence                      11  111111  1112233323333333333     23445677788888888888763 22 111111 


Q ss_pred             CCCCchHHHhhhccCCCceEEEEeC--CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCe
Q 021783          204 PEHPGHELHYSQAKGAGSVLSFLTG--SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL  281 (307)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  281 (307)
                                    ....++.+.+.  +. ...++.+.|...||.+..+..... ..|                 ..++.
T Consensus       342 --------------t~~hi~lv~~~~~gi-~~~~~~~~L~~~~I~~nk~~~p~~-~~~-----------------~~~~g  388 (475)
T PLN03226        342 --------------TDNHLVLWDLRPLGL-TGSRVEKVLDLAHITLNKNAVPGD-SSA-----------------LVPGG  388 (475)
T ss_pred             --------------CCCCEEEEEccCCCC-CHHHHHHHHHHCCCEECCCCCCCC-ccc-----------------CCCCC
Confidence                          01345555542  22 245566666677887766542100 001                 11233


Q ss_pred             EEEEe--------ccCChHHHHHHHHHHHh
Q 021783          282 VRISV--------GIEDVNDLISDLDKALR  303 (307)
Q Consensus       282 iRis~--------~~~~~~~~i~~l~~~l~  303 (307)
                      +|++.        +.+|++++.+.|.++++
T Consensus       389 iRiGt~~lt~~g~~~~d~~~ia~~i~~~~~  418 (475)
T PLN03226        389 VRIGTPAMTSRGLVEKDFEKVAEFLHRAVT  418 (475)
T ss_pred             cccCcHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            77644        22778888888888876

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.77  E-value=1.6e-17  Score=147.51  Aligned_cols=248  Identities=15%  Similarity=0.130  Sum_probs=152.0

Q ss_pred             CCCCeEEEcCCCCcchHHHHhhhcc---------cCCcEEEEecCC-----------ChHHHHhhcCC---CceEEEEeC
Q 021783           12 GTGEEIVAGDDLYGGTDRLLSRVTP---------KTGVVVKRVNTC-----------DLDEVASAIGP---WTKLVWVES   68 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~-----------d~~~l~~~l~~---~~~~v~~~~   68 (307)
                      .++++|++.++.|.+..........         ..+.+++.+|.+           |++++++.++.   +++++++++
T Consensus       120 ~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p  199 (413)
T cd00610         120 TGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEP  199 (413)
T ss_pred             cCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEcc
Confidence            5789999999988886543222211         123456777776           88999998874   678888888


Q ss_pred             CCCCcccccc----HHHHHHHHHHcCCEEEEeCccCCC-CcC---CccCCCccEEEeccccccccCCCceeEEEEEcChh
Q 021783           69 PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  140 (307)
Q Consensus        69 ~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~~~-~~~---~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~  140 (307)
                      .++++|...+    +++|.++|++||+++|+|++|+.. ...   ....++.+.-+.|++|++++  |+++|+++++++ 
T Consensus       200 ~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~~t~sK~l~~--g~~~g~~~~~~~-  276 (413)
T cd00610         200 IQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLGKGLGG--GLPLGAVLGREE-  276 (413)
T ss_pred             ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCeEEEcccccC--ccccEEEEEcHH-
Confidence            8888899887    999999999999999999999732 111   11122332234578899954  578999988754 


Q ss_pred             HHHHH--HHHHHhcCCCCChhhHHHHhhccccHH--HHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhc
Q 021783          141 LAKEL--YFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  216 (307)
Q Consensus       141 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~  216 (307)
                      +.+.+  ...........++..+..+...++.+.  ...++..+..+.+.+.++.....    .+.         . ...
T Consensus       277 ~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~---------~-~~~  342 (413)
T cd00610         277 IMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRERLRELAEK----HPL---------V-GDV  342 (413)
T ss_pred             HHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh----CCc---------E-EEe
Confidence            44433  111111122333444445444454332  22344444455555555432100    000         0 011


Q ss_pred             cCCCceEEEEeCCH--------HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc
Q 021783          217 KGAGSVLSFLTGSL--------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  288 (307)
Q Consensus       217 ~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~  288 (307)
                      ++.++++++.+.+.        .....+.+.+.++||.+.++.                           .+.+|++++.
T Consensus       343 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~---------------------------~~~lR~~~~~  395 (413)
T cd00610         343 RGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG---------------------------GNVIRLLPPL  395 (413)
T ss_pred             ecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecC---------------------------CCEEEEECCC
Confidence            33578888888543        346778888888899776643                           2349999987


Q ss_pred             CChHHHHHHHHHHHh
Q 021783          289 EDVNDLISDLDKALR  303 (307)
Q Consensus       289 ~~~~~~i~~l~~~l~  303 (307)
                      ...++.++.+.+.++
T Consensus       396 ~~t~~~i~~~~~~l~  410 (413)
T cd00610         396 IITEEEIDEGLDALD  410 (413)
T ss_pred             cCCHHHHHHHHHHHH
Confidence            555555555555554

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.77  E-value=3.9e-17  Score=143.93  Aligned_cols=212  Identities=14%  Similarity=0.155  Sum_probs=133.8

Q ss_pred             EEEecCCChHHHHhhcCCCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCcC-----CccCCC
Q 021783           42 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELG  111 (307)
Q Consensus        42 ~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~~-----~~~~~~  111 (307)
                      +..++.+|++++++.+++++++|++++++||+|...+    +++|.++|++||+++|+|++|. .+...     ......
T Consensus       168 ~~~~~~~d~~~l~~~i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~  247 (396)
T PRK04073        168 IKKIPYGDLEALKAAITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVT  247 (396)
T ss_pred             ceEeCCCCHHHHHHhcccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCC
Confidence            4566777999999999888999999999999999986    8999999999999999999997 22211     111223


Q ss_pred             ccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHH
Q 021783          112 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFL  189 (307)
Q Consensus       112 ~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l  189 (307)
                      .|++  +++|.++ .+|.++|+++++++ +.+.+...........++..+..+.+.++.+..  ..++..+..+.+.+.|
T Consensus       248 pdi~--~~sK~lg-~gg~~ig~~~~~~~-i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~~L  323 (396)
T PRK04073        248 PDMY--ILGKALG-GGVFPISCVAANRD-ILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFKEQL  323 (396)
T ss_pred             CCEE--Eeccccc-CCCCcceEEEEcHH-HHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            4554  5789994 46678999999855 433332211122223455566666666654321  1233333444455555


Q ss_pred             hcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcH
Q 021783          190 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV  269 (307)
Q Consensus       190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~  269 (307)
                      ++..      .+.+.          ..++.+.++.+.+..  ....+.+.|.++||.+...                   
T Consensus       324 ~~l~------~~~i~----------~~~~~g~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~-------------------  366 (396)
T PRK04073        324 KEID------NPMIK----------EVRGRGLFIGVELNE--PARPYCEALKEEGLLCKET-------------------  366 (396)
T ss_pred             Hhhc------CCccc----------ceecceEEEEEEecc--hHHHHHHHHHHCCeEEecC-------------------
Confidence            4321      11111          113456777777753  3567777787788866421                   


Q ss_pred             HHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHH
Q 021783          270 EVRQARGLTEDLVRISVGI----EDVNDLISDLDKAL  302 (307)
Q Consensus       270 ~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l  302 (307)
                              .++++|+++++    ++++++++.|.+++
T Consensus       367 --------~~~~iRi~p~l~~t~e~i~~~~~~l~~~l  395 (396)
T PRK04073        367 --------HETVIRFAPPLVITKEELDWAFEKIKAVL  395 (396)
T ss_pred             --------CCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence                    13469999765    56666666666554

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.76  E-value=5.8e-17  Score=134.18  Aligned_cols=244  Identities=17%  Similarity=0.189  Sum_probs=174.0

Q ss_pred             CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcC----CCceEEEEeCCCCCccccccHHHHHHHHH
Q 021783           12 GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKIAEMAH   87 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~~~~l~~~~~   87 (307)
                      =||-+|......|.++.    +-++..+++-..+.++|+++|++.+.    +.+|+|.++++++++|.++|++||+++++
T Consensus       255 lpgcei~SD~gNHASMI----~GIrns~v~K~IFrHND~~hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDvah  330 (570)
T KOG1360|consen  255 LPGCEIFSDEGNHASMI----QGIRNSRVPKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAH  330 (570)
T ss_pred             CCCcEEeccccchHHHH----HHhhhcCCcceeeccCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHH
Confidence            37888888888998888    67788899888889999999999986    46899999999999999999999999999


Q ss_pred             HcCCEEEEeCccCCCCcC---------CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcC--CCC
Q 021783           88 AHGALLLVDNSIMSPVLS---------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG--SGL  156 (307)
Q Consensus        88 ~~~~~li~D~a~~~~~~~---------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~--~~~  156 (307)
                      +||.+.++|++|+.|.+.         +..-...|++.+++.|.|++.    +|++..... +...++.+.....  .++
T Consensus       331 ~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcV----GGYIAat~~-LvDmiRSyAaGFIFTTSL  405 (570)
T KOG1360|consen  331 KYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCV----GGYIAATRK-LVDMIRSYAAGFIFTTSL  405 (570)
T ss_pred             HhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhcccc----cceehhhhh-HHHHHHHhcCceEEecCC
Confidence            999999999999876543         111224799999999999543    799888755 5566776665443  345


Q ss_pred             ChhhHHHHhhccccH-----HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHH
Q 021783          157 APFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA  231 (307)
Q Consensus       157 ~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (307)
                      ++....-++.+.+.+     ....++++.+.+.+.+.|.+..      .|-+             ...+.++-+.+.+..
T Consensus       406 PP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~G------iPVi-------------~~pSHIiPv~vgda~  466 (570)
T KOG1360|consen  406 PPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELG------IPVI-------------PNPSHIIPVRVGDAA  466 (570)
T ss_pred             ChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcC------Cccc-------------CCCcceeeeeccCHH
Confidence            554433333333221     2224556777888888887542      2221             113567888887766


Q ss_pred             HHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 021783          232 LSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  303 (307)
Q Consensus       232 ~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  303 (307)
                      ......+.| ..++|.|..=.      .|...              .+...+||.+.-.++.+.++.|.+.+.
T Consensus       467 l~~~~sd~Li~~h~iYvQaIN------yPTV~--------------rG~E~LRiaPTP~HT~~mm~~lv~~l~  519 (570)
T KOG1360|consen  467 LAKQASDILISKHNIYVQAIN------YPTVA--------------RGTERLRIAPTPHHTPQMMNILVNALL  519 (570)
T ss_pred             HHHHHHHHHHHhcCeEEEecc------CCccc--------------ccceeeecCCCCCCCHHHHHHHHHHHH
Confidence            566665554 45688776532      23221              124559999988788888888877764

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.76  E-value=6.8e-18  Score=146.34  Aligned_cols=254  Identities=12%  Similarity=0.086  Sum_probs=149.5

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHH
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE   84 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~   84 (307)
                      +++.+++. ++.+++....|.+....+.......+ ++..++.+..+.++..+.+++++|.++|.+|.||...|+++|  
T Consensus        75 ~~~~~l~~-~~~l~i~~G~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lV~~~h~et~tG~~~pi~~I--  150 (361)
T TIGR01366        75 AATFGLIE-KKSLHLSFGEFSSKFAKAVKLAPWLG-EPIIVTADPGSAPEPQADPGVDVIAWAHNETSTGVAVPVRRP--  150 (361)
T ss_pred             HHHHhccc-ccccEEecCHHHHHHHHHHHhhhccC-CceEEecCCCCCCCCccCCCCCEEEEcccCCccceecccccc--
Confidence            34445553 24445556666555544444332233 555555443344555566899999999999999999999887  


Q ss_pred             HHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH---------H---H--
Q 021783           85 MAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF---------L---Q--  149 (307)
Q Consensus        85 ~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~---------~---~--  149 (307)
                       ++++|+++++|++++.|..+ +...  +|++++|.+|++++++|  .++++.+++.+.+....         .   .  
T Consensus       151 -~~~~g~~~iVDavqs~g~~~idv~~--~D~~~~s~~K~lg~~~G--l~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~  225 (361)
T TIGR01366       151 -EGSDDALVVIDATSGAGGLPVDIAE--TDVYYFAPQKNFASDGG--LWLAIMSPAALERIEAIAASGRWVPEFLSLPTA  225 (361)
T ss_pred             -cccCCCeEEEEcCccccCCCCCHHH--CCEEEEEchhhcCCCCc--eEEEEECHHHHhhhhcccCCCCCCchhhhHHHH
Confidence             58899999999999999987 6554  89999999999987766  77777786655332110         0   0  


Q ss_pred             --H----hcCCCCChhhHHHHhhccc------cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhcc
Q 021783          150 --N----AEGSGLAPFDCWICLRGVK------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  217 (307)
Q Consensus       150 --~----~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~  217 (307)
                        .    ...++++....+....+++      .++.+.++..+.++.+.+.++....+.-+ ...    +..      ..
T Consensus       226 ~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~-~~~----~~~------~s  294 (361)
T TIGR01366       226 VDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPF-VTD----PGK------RS  294 (361)
T ss_pred             HhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCC----hhh------cc
Confidence              0    0112222222222222332      24445566677777777777766532111 000    000      00


Q ss_pred             CCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHH
Q 021783          218 GAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD  297 (307)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~  297 (307)
                      .....+.| .++. +...+.+.|+.+||.+..|.. .                    .  ..+.+|+|+.....++.++.
T Consensus       295 ~~v~~v~~-~~g~-~~~~v~~~L~~~gI~i~~~~~-~--------------------l--~~~~vRis~~~~~t~~di~~  349 (361)
T TIGR01366       295 QVVGTIDF-VDDI-DAATVAKILRANGIVDTEPYR-K--------------------L--GRNQLRVAMFPAIDPDDVEA  349 (361)
T ss_pred             cceEEEEC-CCcc-CHHHHHHHHHHCCCeeccCcc-c--------------------c--CCCcEEEEcCCCCCHHHHHH
Confidence            11244555 2443 477788888888987754321 0                    1  13469999986444444444


Q ss_pred             HHHHHh
Q 021783          298 LDKALR  303 (307)
Q Consensus       298 l~~~l~  303 (307)
                      |.++|+
T Consensus       350 l~~al~  355 (361)
T TIGR01366       350 LTECVD  355 (361)
T ss_pred             HHHHHH
Confidence            444443

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.75  E-value=8e-17  Score=141.04  Aligned_cols=174  Identities=15%  Similarity=0.145  Sum_probs=124.6

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC--------CChHHHHhhcCC---CceEEEEeCCC-CCccccccHH
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIGP---WTKLVWVESPT-NPRQQICDIR   80 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~--------~d~~~l~~~l~~---~~~~v~~~~~~-n~tG~~~~~~   80 (307)
                      +||+|+++..+|.+..    .++...|++++.+|.        .|++++++++++   ++.++++.+++ +++|...|++
T Consensus       150 ~gd~VI~p~~th~S~~----kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~  225 (444)
T TIGR03531       150 KAKYVIWPRIDQKSCI----KAISTAGFEPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIE  225 (444)
T ss_pred             CCCEEEEECcChHHHH----HHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHH
Confidence            6899999999998888    778889999999994        189999999974   45666666554 4456788999


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCcC------CccCCC-ccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcC
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVLS------RPLELG-ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  153 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~~------~~~~~~-~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~  153 (307)
                      +|.++|++||+++|+|+||+.+...      .....| +|++++|+||++..+.+  +|+++.+++.+.+.+........
T Consensus       226 eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~--Gg~I~~~d~el~~~i~~~y~g~~  303 (444)
T TIGR03531       226 EIAKICANYDIPHIVNNAYGLQSNKYMELINKAIKVGRVDAVVSSTDKNFMVPVG--GAIIYSFDENFIQEISKSYPGRA  303 (444)
T ss_pred             HHHHHHHHcCCEEEEECcCcCcChhhhhhhhccccccCCCeEEEeCccCCCCCCC--EEEEEECCHHHHHHHHHhccCCC
Confidence            9999999999999999999965432      222344 69999999999976666  78888877777665554322211


Q ss_pred             CCCChhhHHH--HhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 021783          154 SGLAPFDCWI--CLRGVKTMALRVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       154 ~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~l~~~l~~~  192 (307)
                      ........|+  ...+.+.++...++..++++.+.+.|++.
T Consensus       304 ~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l  344 (444)
T TIGR03531       304 SASPSLDVLITLLSLGSKGYLELLKERKEMYKYLKELLQKL  344 (444)
T ss_pred             CChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111222232  22344666666777777777777777654

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.75  E-value=1.6e-16  Score=140.45  Aligned_cols=221  Identities=17%  Similarity=0.240  Sum_probs=137.0

Q ss_pred             cEEEEecCCChHHHHhhcCCCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccCC-CCcC---CccCCC
Q 021783           40 VVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS---RPLELG  111 (307)
Q Consensus        40 ~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~~-~~~~---~~~~~~  111 (307)
                      .+++.++.+|++++++.+.+++++|+++.++++.|...+    +++|.++|++||+++|+||+|+. +...   .....+
T Consensus       164 ~~~~~~~~~d~~~l~~~l~~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~  243 (403)
T PRK05093        164 ADITHVPFNDLAAVKAVIDDHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYG  243 (403)
T ss_pred             CCcEEeCCCCHHHHHHHhcCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcC
Confidence            356777888999999999888999999954444444332    99999999999999999999872 1111   111233


Q ss_pred             ccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHH--HHHHHHHHHHHHHHHHH
Q 021783          112 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFL  189 (307)
Q Consensus       112 ~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l  189 (307)
                      .+.-+.|++|.++  +|.++|+++++++ +.+.+...........++..+..+...++.+.  ...++..+..+.+.+.|
T Consensus       244 ~~pdi~s~sK~l~--~G~rig~vv~~~~-i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L  320 (403)
T PRK05093        244 VTPDILTSAKALG--GGFPIGAMLTTAE-IASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGL  320 (403)
T ss_pred             CCCCEEEeccccc--CCcceEEEEEcHH-HHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            3333678999995  5899999999855 43433322222223345555665555554332  22344445555555555


Q ss_pred             hcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH--HHHHHHHhcCCcceeecCCCCccceeecccccCCCCC
Q 021783          190 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI  267 (307)
Q Consensus       190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~  267 (307)
                      ++...  .  +.         ++ ...++.+.++++.+.+.  ....++.+.+..+|+.+..+.                
T Consensus       321 ~~~~~--~--~~---------~~-~~~~~~G~~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~g----------------  370 (403)
T PRK05093        321 QKINQ--K--YG---------VF-SEIRGMGLLIGAELKPQYKGRARDFLNAAAEEGVMVLVAG----------------  370 (403)
T ss_pred             HHHHh--h--CC---------Ce-EeEeeCceEEEEEecCcchhHHHHHHHHHHHCCeEEecCC----------------
Confidence            54310  0  00         00 01233567788887532  246678888877888765421                


Q ss_pred             cHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          268 PVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       268 ~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                                 ++++|++++.    +++++.++.|.+++++
T Consensus       371 -----------~~~lRl~~~~~~~~~~i~~~~~~l~~~l~~  400 (403)
T PRK05093        371 -----------PDVLRFAPSLVIEEADIDEGLARFEKAVAK  400 (403)
T ss_pred             -----------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                       3469998765    6677777777777654

>PLN03032 serine decarboxylase; Provisional

Probab=99.74  E-value=2.3e-16  Score=135.95  Aligned_cols=174  Identities=18%  Similarity=0.199  Sum_probs=129.0

Q ss_pred             CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCC---CceEEEEeCCCCCccccccHHHHH
Q 021783           12 GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP---WTKLVWVESPTNPRQQICDIRKIA   83 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~---~~~~v~~~~~~n~tG~~~~~~~l~   83 (307)
                      .+++.|+++..+|++..    ..++..|..++.+|.+     |+++|++++++   +|.+|+++..+|++|.+.|+++|+
T Consensus       109 ~~~~~vi~s~~~H~Sv~----kaa~~lg~~~~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~  184 (374)
T PLN03032        109 FPDGILYASRESHYSVF----KAARMYRMEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRIL  184 (374)
T ss_pred             CCCcEEEeCCCceeHHH----HHHHHcCCCCeEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHH
Confidence            35678999999999998    5566677777777754     89999999975   577888999999999999999999


Q ss_pred             HHHHHcC-----CEEEEeCccCCCCcCC-------ccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH--
Q 021783           84 EMAHAHG-----ALLLVDNSIMSPVLSR-------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--  149 (307)
Q Consensus        84 ~~~~~~~-----~~li~D~a~~~~~~~~-------~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~--  149 (307)
                      ++|+++|     +++++|+|++.+..+.       ....++|.++.|+||+++.|.|  +|+++.+++.+.. +....  
T Consensus       185 ~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g--~G~ll~r~~~~~~-~~~~~~Y  261 (374)
T PLN03032        185 RILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMP--CGVALTRKKHVKA-LSQNVEY  261 (374)
T ss_pred             HHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcC--eEEEEEEchhhHh-hccCCcc
Confidence            9999996     5899999998765441       1123689999999999966998  9999999764432 21100  


Q ss_pred             ------HhcCCCC--ChhhHHHHhh--ccccHHHHHHHHHHHHHHHHHHHhcC
Q 021783          150 ------NAEGSGL--APFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       150 ------~~~~~~~--~~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~l~~~  192 (307)
                            ...++..  .....|..+.  +.+.+....++..+.++++.+.+++.
T Consensus       262 l~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~  314 (374)
T PLN03032        262 LNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA  314 (374)
T ss_pred             cCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                  1122222  2244444433  34667777888888888888888764

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.73  E-value=1.5e-16  Score=140.68  Aligned_cols=248  Identities=13%  Similarity=0.142  Sum_probs=146.9

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhccc---------CCcEEEEecCCChHHHHhhcC-CCceEEEEeCCCCCcccccc----
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTPK---------TGVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICD----   78 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~~---------~g~~~~~v~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~----   78 (307)
                      .+++|++.+..|.+.....-.....         ..-.+..++.+|++++++.+. +++++|++++++||+|.+.+    
T Consensus       121 ~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~  200 (400)
T PTZ00125        121 NQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGY  200 (400)
T ss_pred             CCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHH
Confidence            3577887777766654321111110         001234566679999999996 78999999999999999987    


Q ss_pred             HHHHHHHHHHcCCEEEEeCccC-CCCc---CCc--cCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhc
Q 021783           79 IRKIAEMAHAHGALLLVDNSIM-SPVL---SRP--LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE  152 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~-~~~~---~~~--~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~  152 (307)
                      +++|.++|++||+++|+|++|+ .|..   ...  .....|+++  ++|++++ ++.++|+++++++ +.+.+.......
T Consensus       201 l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~--~sK~l~~-g~~~ig~v~~~~~-~~~~~~~~~~~~  276 (400)
T PTZ00125        201 LKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVL--LGKALSG-GLYPISAVLANDD-VMLVIKPGEHGS  276 (400)
T ss_pred             HHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEEE--EcccccC-CCcCcEEEEEcHH-HHhhccCCCCCC
Confidence            9999999999999999999985 2211   111  112346654  6799953 3336899999865 433332221122


Q ss_pred             CCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC-
Q 021783          153 GSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-  229 (307)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-  229 (307)
                      .....+..+..+...++.+..  ..++..+..+.+.+.+++..          ...+.+    ...++.+.++++.++. 
T Consensus       277 t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~~~l~~l~----------~~~~~~----~~~~~~g~~~~v~~~~~  342 (400)
T PTZ00125        277 TYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFRDGLKELL----------KKSPWV----KEIRGKGLLNAIVFDHS  342 (400)
T ss_pred             CCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH----------hcCCCe----EEEecccEEEEEEEccC
Confidence            223344555555554543321  11222233333344443210          000000    0012346677777743 


Q ss_pred             -HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          230 -LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       230 -~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                       ......+.+.|.++||.+.++.                           .+++|++++.    +++++.++.|.+++++
T Consensus       343 ~~~~~~~~~~~l~~~Gv~v~~~~---------------------------~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~  395 (400)
T PTZ00125        343 DGVNAWDLCLKLKENGLLAKPTH---------------------------DNIIRFAPPLVITKEQLDQALEIIKKVLKS  395 (400)
T ss_pred             cchHHHHHHHHHHHCCeEEeecC---------------------------CCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence             2346777888877888765421                           3459999754    6788888888887765


Q ss_pred             C
Q 021783          305 G  305 (307)
Q Consensus       305 ~  305 (307)
                      +
T Consensus       396 ~  396 (400)
T PTZ00125        396 F  396 (400)
T ss_pred             H
Confidence            4

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.73  E-value=7.5e-17  Score=125.19  Aligned_cols=129  Identities=28%  Similarity=0.324  Sum_probs=103.8

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCC-----h--HHHHhhc-CCCceEEEEeCCCCCc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD-----L--DEVASAI-GPWTKLVWVESPTNPR   73 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d-----~--~~l~~~l-~~~~~~v~~~~~~n~t   73 (307)
                      |+ .++.++.++|++|+++++.|++...   ..+...|++++.++.++     .  +++++.. .++++++++++++|++
T Consensus        29 a~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  105 (170)
T cd01494          29 ANEAALLALLGPGDEVIVDANGHGSRYW---VAAELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSG  105 (170)
T ss_pred             HHHHHHHHhCCCCCEEEEeecccceehh---hHHHhcCCEEEEeccCCCCccchhhhhhhhccccCceEEEEEecCcCCC
Confidence            44 4555667789999999999988873   34577899999988741     1  2444443 4789999999999999


Q ss_pred             cccccHHHHHHHHHHcCCEEEEeCccCCCCcC----CccCCCccEEEeccccccccCCCceeEEEEEc
Q 021783           74 QQICDIRKIAEMAHAHGALLLVDNSIMSPVLS----RPLELGADIVMHSATKFIAGHSDVMAGVLAVK  137 (307)
Q Consensus        74 G~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~----~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~  137 (307)
                      |...|.++|.++|+++|+++|+|++|+.+...    +....++|+++.|+||++++ ++  +|++++|
T Consensus       106 g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s~~K~~~~-~~--~G~l~~~  170 (170)
T cd01494         106 GVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGG-EG--GGVVIVK  170 (170)
T ss_pred             CeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEEEcccccCC-Cc--eEEEEeC
Confidence            99999999999999999999999999876654    35556899999999999976 55  8998875

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.73  E-value=4.1e-16  Score=136.78  Aligned_cols=241  Identities=15%  Similarity=0.155  Sum_probs=146.4

Q ss_pred             CCeEEEcCCCCcchHHHHhhhcccCC---------cEEEEecCCChHHHHhhcCCCceEEEEeCCCCCcccccc----HH
Q 021783           14 GEEIVAGDDLYGGTDRLLSRVTPKTG---------VVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD----IR   80 (307)
Q Consensus        14 gd~Vlv~~~~~~~~~~~~~~~~~~~g---------~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~----~~   80 (307)
                      +++|++.++.|.+.............         ..+..++.+|++++++.+.+++++|+++++++++|...+    ++
T Consensus       112 ~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ii~e~i~~~~G~~~~~~~~l~  191 (377)
T PRK02936        112 KSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNEEVAAVMLEVVQGEGGVIPADPAFLQ  191 (377)
T ss_pred             CCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccCCeEEEEEecccCCCCCccCCHHHHH
Confidence            46788888777654322111111100         134566777999999999888999999999998887742    99


Q ss_pred             HHHHHHHHcCCEEEEeCccCC-CCcC---CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCC
Q 021783           81 KIAEMAHAHGALLLVDNSIMS-PVLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL  156 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~-~~~~---~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~  156 (307)
                      +|.++|++||+++|+|++|.. +...   ....++.+.-+.+++|.++  +|+++|+++++++ +.+.+...........
T Consensus       192 ~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~--~G~~ig~v~~~~~-~~~~~~~~~~~~t~~~  268 (377)
T PRK02936        192 EVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVTVAKGLG--NGIPVGAMIGKKE-LGTAFGPGSHGSTFGG  268 (377)
T ss_pred             HHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEEEEccccc--CCCccEEEEEcHH-HHhhccCCCCCCCCCC
Confidence            999999999999999999952 1111   1112232222457999994  5788999998754 4444432222222334


Q ss_pred             ChhhHHHHhhccccHH--HHHHHHHHHHHHHHHHHhcC-CCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHH
Q 021783          157 APFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALS  233 (307)
Q Consensus       157 ~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (307)
                      ++..+..+.+.++.+.  ...++..++.+.+.+.|++. ++.     +.+.          ..++.+.++++.+.+.  .
T Consensus       269 ~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-----~~~~----------~v~~~g~~~~i~~~~~--~  331 (377)
T PRK02936        269 NPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQEELEHL-----ECVK----------NIRGKGLMIGIECTEE--V  331 (377)
T ss_pred             CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhC-----CcEE----------eEeecceEEEEEecch--H
Confidence            5566666666665442  23445555555566655532 100     1000          0123466788888643  5


Q ss_pred             HHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHH
Q 021783          234 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKA  301 (307)
Q Consensus       234 ~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~  301 (307)
                      ..+.+.+.++||.+..+.                           ++++|++++.    +++++.++.|.++
T Consensus       332 ~~~~~~l~~~gv~v~~~g---------------------------~~~lRi~p~~~~~~~~i~~~i~~l~~~  376 (377)
T PRK02936        332 APVIEQLREEGLLVLSAG---------------------------PNVIRLLPPLVVTKEELDQAVYLLKKV  376 (377)
T ss_pred             HHHHHHHHHCCeEEecCC---------------------------CCEEEEECCcccCHHHHHHHHHHHHHh
Confidence            677778888888765422                           3459999754    4555555555543

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.72  E-value=2.9e-16  Score=149.17  Aligned_cols=175  Identities=25%  Similarity=0.263  Sum_probs=120.6

Q ss_pred             CCCC----eEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCC---CceEEEEeCCCCCcccc-cc
Q 021783           12 GTGE----EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP---WTKLVWVESPTNPRQQI-CD   78 (307)
Q Consensus        12 ~~gd----~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~---~~~~v~~~~~~n~tG~~-~~   78 (307)
                      ++||    +|++++..|++..    ..+...|++++.++.+     |+++|++.+++   ++.+|++++|++. |.. .|
T Consensus       584 ~~G~~~r~~vlis~~aH~snp----~sa~~~G~~vv~v~~d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~-G~~e~~  658 (954)
T PRK05367        584 SRGEGHRDVCLIPSSAHGTNP----ASAVMAGMKVVVVACDENGNIDLDDLRAKAEEHADNLAAIMITYPSTH-GVFEET  658 (954)
T ss_pred             ccCCCCCCEEEEEchhhhhhH----HHHHHCCCEEEEECCCCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCC-eeecCC
Confidence            5665    5999999998887    4567789999999874     78999999864   5788889998886 554 68


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCc--CCccCCCccEEEeccccccccCCCce---eEEEEEcChhHHHHHHHHH----
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVL--SRPLELGADIVMHSATKFIAGHSDVM---AGVLAVKGERLAKELYFLQ----  149 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~--~~~~~~~~d~~~~s~~K~~~g~~g~~---~G~~~~~~~~~~~~~~~~~----  149 (307)
                      +++|+++||++|+++++|+++..+..  ..+..+|+|++++|+||||+.|.|.-   .|++.+++. +...+....    
T Consensus       659 I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~-l~p~lpg~~v~~~  737 (954)
T PRK05367        659 IREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAH-LAPFLPGHPVQIA  737 (954)
T ss_pred             HHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCCCEEEecCcccCCCCcCCCCCceEEEeeccc-ccccCCCCccCcC
Confidence            99999999999999999999975533  35668899999999999985444311   668888743 222111110    


Q ss_pred             Hh---cCCCC-Ch---------hhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 021783          150 NA---EGSGL-AP---------FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       150 ~~---~~~~~-~~---------~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~  192 (307)
                      ..   .+... +.         ...++...|.+.++...+....+++++.+.|+..
T Consensus       738 ~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~  793 (954)
T PRK05367        738 GGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH  793 (954)
T ss_pred             CCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            00   01000 10         1122223344556666666667888888888654

>PLN02880 tyrosine decarboxylase

Probab=99.71  E-value=6e-16  Score=138.60  Aligned_cols=173  Identities=16%  Similarity=0.207  Sum_probs=121.8

Q ss_pred             eEEEcCCCCcchHHHHhhhcccCCcE---EEEecCC-------ChHHHHhhcCC------CceEEEEeCCCCCccccccH
Q 021783           16 EIVAGDDLYGGTDRLLSRVTPKTGVV---VKRVNTC-------DLDEVASAIGP------WTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus        16 ~Vlv~~~~~~~~~~~~~~~~~~~g~~---~~~v~~~-------d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~~   79 (307)
                      .|++++..|.+..    +++...|+.   ++.||.+       |+++|++++..      .+-+|+.+..+..+|.+.|+
T Consensus       183 vv~~S~~aH~Sv~----Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl  258 (490)
T PLN02880        183 VVYASDQTHSALQ----KACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPL  258 (490)
T ss_pred             EEEEcCCchHHHH----HHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcH
Confidence            5668888998888    667777873   5555552       78899888852      35677777888899999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCC------ccC-CCccEEEeccccccccCCCceeEEEEEcChhHH-HHHHHHHHh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSR------PLE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLA-KELYFLQNA  151 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~------~~~-~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~-~~~~~~~~~  151 (307)
                      ++|.++|++||+|+++|+||+.+....      ... .++|.++.++|||++.|.+  +|++++++.... +.+.....+
T Consensus       259 ~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~--~g~llvr~~~~l~~~~~~~~~Y  336 (490)
T PLN02880        259 LELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFD--CSLLWVKDRNALIQSLSTNPEF  336 (490)
T ss_pred             HHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCcc--EEEEEEeCHHHHHHHHccCHHH
Confidence            999999999999999999998764422      122 2689999999999999988  999999864321 211110000


Q ss_pred             --------------------cCCCCChhhHHHH--hhccccHHHHHHHHHHHHHHHHHHHhcCCC
Q 021783          152 --------------------EGSGLAPFDCWIC--LRGVKTMALRVEKQQDNAQKIAEFLASHPR  194 (307)
Q Consensus       152 --------------------~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~  194 (307)
                                          .+........|+.  ..|.+.+..+.++..+.++++.+.+++.+.
T Consensus       337 l~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~  401 (490)
T PLN02880        337 LKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSR  401 (490)
T ss_pred             hcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence                                0011112334433  335566777777777888888888876654

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.70  E-value=9e-17  Score=135.31  Aligned_cols=219  Identities=19%  Similarity=0.261  Sum_probs=154.3

Q ss_pred             EEEEecCCChHHHHhhcCCCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC----CCCcCCccCCCc
Q 021783           41 VVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM----SPVLSRPLELGA  112 (307)
Q Consensus        41 ~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~----~~~~~~~~~~~~  112 (307)
                      .++.+|.+|+++++++++++|.+|+++..+-..|++.+    ++++.++|++||+++|.||+|.    +|.+.....+|+
T Consensus       165 g~~~vpfnDi~al~~ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV  244 (404)
T COG4992         165 GFRHVPFNDIEALEAAIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGV  244 (404)
T ss_pred             CceecCCCCHHHHHHHhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCC
Confidence            45667778999999999999999999999999999975    9999999999999999999995    455555555676


Q ss_pred             cEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHH----H
Q 021783          113 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE----F  188 (307)
Q Consensus       113 d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~----~  188 (307)
                      .--+.++.|.++|  |+.+|.++.+ +...+.+......+...-.+..+....+.++.+..  +...++.+++.+    .
T Consensus       245 ~PDI~tlaK~LgG--G~PigA~la~-~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~--e~ll~~v~~~g~~~~~~  319 (404)
T COG4992         245 EPDILTLAKALGG--GFPIGAMLAT-EEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLE--EGLLENVREKGEYLLQR  319 (404)
T ss_pred             CCCEEEeeccccC--CccceeeEEc-hhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcc--hhHHHHHHHHHHHHHHH
Confidence            6666669999964  5779999988 44444433333334444556667766666654422  333444444433    3


Q ss_pred             HhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCc
Q 021783          189 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIP  268 (307)
Q Consensus       189 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~  268 (307)
                      |++..    ..++.+.+.          ++.|-++.+.+.....+..+.+.+..+|+.+...+                 
T Consensus       320 L~~l~----~~~~~v~~v----------RG~GLmiGiel~~~~~a~~~~~~~~~~gvL~~~a~-----------------  368 (404)
T COG4992         320 LRELK----RRYPLVKEV----------RGRGLMIGIELKEPYRARDIVRALREEGVLVLPAG-----------------  368 (404)
T ss_pred             HHHHh----hcCCceeee----------ecceeEEEEEecCcccHHHHHHHHHHCCeEEecCC-----------------
Confidence            33321    111112222          77889999999655458888899999998765432                 


Q ss_pred             HHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          269 VEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       269 ~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                                ++.+|+.+.+    +++++.++.|.++++..
T Consensus       369 ----------~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~  399 (404)
T COG4992         369 ----------PNVIRFLPPLVITEEEIDEALDALERALAAA  399 (404)
T ss_pred             ----------CCeEEecCCccCCHHHHHHHHHHHHHHHHHh
Confidence                      2348888875    89999999999998753

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.70  E-value=3.3e-15  Score=128.36  Aligned_cols=223  Identities=21%  Similarity=0.169  Sum_probs=130.6

Q ss_pred             cHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhccc-------CCcEEEEecCC------ChHHHHhhcC-CCceEEEEe
Q 021783            2 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK-------TGVVVKRVNTC------DLDEVASAIG-PWTKLVWVE   67 (307)
Q Consensus         2 aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~-------~g~~~~~v~~~------d~~~l~~~l~-~~~~~v~~~   67 (307)
                      |+++++.++++|||+|+..+..+++....- .....       ...+.+.++.+      |.+++++.+. .++++|++.
T Consensus        98 An~av~~aLl~pGD~Im~l~l~~GGHlshg-~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G  176 (399)
T PF00464_consen   98 ANLAVYMALLKPGDTIMGLSLPHGGHLSHG-SSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHKPKLIICG  176 (399)
T ss_dssp             HHHHHHHHHT-TT-EEEEEEGGGT--GGGT--TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEEEE
T ss_pred             HHHHHHHHHHhhcCcEEecChhhccccccc-ccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEEEC
Confidence            456788899999999998887665543110 00011       12344444432      8888888876 588999987


Q ss_pred             CCCCCccccccHHHHHHHHHHcCCEEEEeCccC-----CCCcCCccCCCccEEEeccccccccCCCceeEEEEEc-----
Q 021783           68 SPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVK-----  137 (307)
Q Consensus        68 ~~~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~-----~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~-----  137 (307)
                      ..++|  ...|.+++.++|++.|+++++|.+|-     .|.++++..+ +|++++|+||+|.||.   +|+++++     
T Consensus       177 ~S~y~--~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~-ADvvt~sThKtl~GPr---ggiI~~~~~~~~  250 (399)
T PF00464_consen  177 ASSYP--RPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPY-ADVVTGSTHKTLRGPR---GGIILTNKGSKN  250 (399)
T ss_dssp             -SSTS--S---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCT-SSEEEEESSGGG-SSS----EEEEES-SEEE
T ss_pred             chhcc--CccCHHHHHHHHHhcCcEEEecccccccceehheecCcccc-ceEEEeeccccccccC---ceEEEEcCCccc
Confidence            65554  67899999999999999999999995     5677788876 9999999999998887   7999999     


Q ss_pred             --------ChhHHHHHHHHHHhcC-CCCCh-----hhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCC
Q 021783          138 --------GERLAKELYFLQNAEG-SGLAP-----FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL  203 (307)
Q Consensus       138 --------~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l  203 (307)
                              ++.+.+.+....-... +.+..     ....+..+.-..+....++..+|++.|.+.|.++.-  .+.. + 
T Consensus       251 ~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~--~v~~-g-  326 (399)
T PF00464_consen  251 VDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQERGF--KVVT-G-  326 (399)
T ss_dssp             E-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT---EEGG-G-
T ss_pred             cCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhCCc--EEEE-C-
Confidence                    4556555554332211 11111     111111211224677788899999999999987631  1111 1 


Q ss_pred             CCCCchHHHhhhccCCCceEEEEeCCHH-HHHHHHhcCCcceeecC
Q 021783          204 PEHPGHELHYSQAKGAGSVLSFLTGSLA-LSKHVVETTKYFSITVS  248 (307)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~v~  248 (307)
                                   .....++++.+.+.. ......+.|...||.+.
T Consensus       327 -------------gTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vn  359 (399)
T PF00464_consen  327 -------------GTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVN  359 (399)
T ss_dssp             -------------S-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-E
T ss_pred             -------------CCCCCeEEEEecccccchHHHHHHHHhcCeeec
Confidence                         113457777764321 24555556666667554

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.70  E-value=1.6e-15  Score=133.54  Aligned_cols=220  Identities=16%  Similarity=0.217  Sum_probs=137.2

Q ss_pred             EEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccc----cHHHHHHHHHHcCCEEEEeCccC-C---CCcCCccCCCc
Q 021783           41 VVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM-S---PVLSRPLELGA  112 (307)
Q Consensus        41 ~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~----~~~~l~~~~~~~~~~li~D~a~~-~---~~~~~~~~~~~  112 (307)
                      .+..++.+|++++++.+.+++++|+++.++++.|...    .+++|.++|++||+++|+||+|. .   |.......++.
T Consensus       160 ~~~~~~~~d~~~l~~~l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv  239 (397)
T TIGR03246       160 GIKHAPYNDLAAAKALISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGV  239 (397)
T ss_pred             ceEEeCCCCHHHHHHHhccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCC
Confidence            4556788899999999988899999998888888664    39999999999999999999983 2   22112223343


Q ss_pred             cEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHH--HHHHHHHHHHHHHHHHHh
Q 021783          113 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLA  190 (307)
Q Consensus       113 d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~  190 (307)
                      ..-+.+++|.++  .|.++|+++++++ +.+.+............+..+..+.+.++.+.  ...++..+..+.+.+.|+
T Consensus       240 ~pDi~t~~K~lg--gG~pigav~~~~~-i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L~  316 (397)
T TIGR03246       240 TPDILTSAKALG--GGFPIGAMLTTTE-IAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGLE  316 (397)
T ss_pred             CCCEEEeehhhh--CCcceeEEEEcHH-HHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence            333447999994  4778999999854 44444322111222234445555555554332  223344444455555554


Q ss_pred             cCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC--HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCc
Q 021783          191 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIP  268 (307)
Q Consensus       191 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~  268 (307)
                      +...  .  ++..          ...++.+.++.+.+.+  ......+.+.|.++|+.+...                  
T Consensus       317 ~l~~--~--~~~~----------~~vrg~G~~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~~------------------  364 (397)
T TIGR03246       317 KINA--R--YNVF----------SEIRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALIA------------------  364 (397)
T ss_pred             HHHh--c--CCCe----------EeeecCceEEEEEEcCchhhHHHHHHHHHHHCCeEEeec------------------
Confidence            3210  0  0100          0113456777777643  234678888888888866431                  


Q ss_pred             HHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          269 VEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       269 ~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                               +++++|++++.    +++++.++.|.+++++
T Consensus       365 ---------g~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~  395 (397)
T TIGR03246       365 ---------GPNVVRFAPSLVISDDDIDEGLARFERAIEQ  395 (397)
T ss_pred             ---------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                     12459998765    7788888888877764

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.69  E-value=1.3e-15  Score=141.77  Aligned_cols=118  Identities=19%  Similarity=0.271  Sum_probs=98.0

Q ss_pred             CCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcC---CCceEEEEeCCCCCccccccHHHHHHH
Q 021783           14 GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG---PWTKLVWVESPTNPRQQICDIRKIAEM   85 (307)
Q Consensus        14 gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~~~~l~~~   85 (307)
                      .++|+++...|+++.    ..+...|++++.++.+     |+++|++.++   +++++|++++|++-.+...++++|+++
T Consensus       591 r~~vLIp~saHgtNp----asa~~~GieVv~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~i  666 (954)
T PRK12566        591 RDICLIPSSAHGTNP----ASAQMAGMRVVIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEV  666 (954)
T ss_pred             CCEEEecccccccCH----HHHHHCCCEEEEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHH
Confidence            468899999997776    3466689999999884     8999999987   788899999998866555679999999


Q ss_pred             HHHcCCEEEEeCccCCCCc--CCccCCCccEEEeccccccccCCCceeEEEEEc
Q 021783           86 AHAHGALLLVDNSIMSPVL--SRPLELGADIVMHSATKFIAGHSDVMAGVLAVK  137 (307)
Q Consensus        86 ~~~~~~~li~D~a~~~~~~--~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~  137 (307)
                      ||++|+++++|+++..+..  ..+.++|+|++++++||||++|.|  +|.....
T Consensus       667 ah~~Galv~vDgA~~~a~~~l~~Pg~~GADi~~~s~HKtf~~P~G--~GGP~vG  718 (954)
T PRK12566        667 VHQHGGQVYMDGANLNAQVGLARPADIGADVSHMNLHKTFCIPHG--GGGPGMG  718 (954)
T ss_pred             HHHcCCEEEEEeeChhhccCCCChhhcCCCEEEecCCcccCcCcc--CCCCccc
Confidence            9999999999999975543  357889999999999999987777  5554444

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.69  E-value=2.9e-15  Score=134.51  Aligned_cols=176  Identities=19%  Similarity=0.184  Sum_probs=122.0

Q ss_pred             CCeEEEcCCCCcchHHHHhhhcccCCc---EEEEecCC-----ChHHHHhhcC----CCceEEEEe--CCCCCccccccH
Q 021783           14 GEEIVAGDDLYGGTDRLLSRVTPKTGV---VVKRVNTC-----DLDEVASAIG----PWTKLVWVE--SPTNPRQQICDI   79 (307)
Q Consensus        14 gd~Vlv~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~-----d~~~l~~~l~----~~~~~v~~~--~~~n~tG~~~~~   79 (307)
                      +..|++++.+|.+..    ++++..|.   +++.+|.+     |+++|++.+.    .+++.++++  ..++.||.+.|+
T Consensus       209 ~~~v~~S~~~H~S~~----kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl  284 (522)
T TIGR03799       209 GLAILVSERGHYSLG----KAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPL  284 (522)
T ss_pred             ceEEEECCCchHHHH----HHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCH
Confidence            467999999998887    55666676   67777764     8899998885    455555554  567789999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCc------cC-CCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHH--
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRP------LE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--  150 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~------~~-~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~--  150 (307)
                      ++|+++|+++|+++++|+||+.+.....      .. .++|.++.|+|||+.+|.|  +|+++++++...+.+.....  
T Consensus       285 ~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g--~G~llvr~~~~~~~~~~~~~Yl  362 (522)
T TIGR03799       285 DEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMG--AGMVLFKDPALMSAIEHHAEYI  362 (522)
T ss_pred             HHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcc--cEEEEEeCHHHHHHhccCcchh
Confidence            9999999999999999999986654322      22 2689999999999989998  99999987655333221000  


Q ss_pred             ------------hcCCCCCh-hhHHHHhhc--cccHHHHHHHHHHHHHHHHHHHhcCCCc
Q 021783          151 ------------AEGSGLAP-FDCWICLRG--VKTMALRVEKQQDNAQKIAEFLASHPRV  195 (307)
Q Consensus       151 ------------~~~~~~~~-~~~~~~~~~--l~~~~~~~~~~~~~~~~l~~~l~~~~~~  195 (307)
                                  ..++.... ...|..+..  .+.++...++..+.++.+.+.+++.+.+
T Consensus       363 ~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~  422 (522)
T TIGR03799       363 LRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDF  422 (522)
T ss_pred             cCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence                        11111111 123333322  2345555666677777777777766543

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.69  E-value=7.3e-15  Score=122.33  Aligned_cols=184  Identities=24%  Similarity=0.224  Sum_probs=130.0

Q ss_pred             cHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCc--EEEEecCC------ChHHHHhhcC-CCceEEEEeCCCCC
Q 021783            2 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV--VVKRVNTC------DLDEVASAIG-PWTKLVWVESPTNP   72 (307)
Q Consensus         2 aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~------d~~~l~~~l~-~~~~~v~~~~~~n~   72 (307)
                      |+.++++++++|||+|+-.+..|+++..-- .-....|.  +.+..+.+      |.|++++... .++|+|+.-.... 
T Consensus       100 AN~av~~All~pGDtimgm~l~~GGHltHg-~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~ii~G~SaY-  177 (413)
T COG0112         100 ANQAVYLALLQPGDTIMGLDLSHGGHLTHG-SPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGGSAY-  177 (413)
T ss_pred             HHHHHHHHHcCCCCeEecccCCCCCcccCC-CCCCccceeEEeEecccccccCccCHHHHHHHHHHhCCCEEEECcccc-
Confidence            567899999999999998777666654211 01122332  34444433      7888888876 6889888754443 


Q ss_pred             ccccccHHHHHHHHHHcCCEEEEeCccC-----CCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH
Q 021783           73 RQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  147 (307)
Q Consensus        73 tG~~~~~~~l~~~~~~~~~~li~D~a~~-----~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~  147 (307)
                       -...|.+++.++|.+.|+++++|-+|-     .|..+++..+ +|++++|+||++.||+   +|+++++++++.+.+..
T Consensus       178 -~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~-AdvVTtTTHKTlrGPr---GG~Il~~~eel~kkin~  252 (413)
T COG0112         178 -SRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPH-ADVVTTTTHKTLRGPR---GGIILTNDEELAKKINS  252 (413)
T ss_pred             -ccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCc-cceEeCCcccCCCCCC---ceEEEeccHHHHHHhhh
Confidence             377899999999999999999999994     5667788886 9999999999998886   79999998777666654


Q ss_pred             HHHhc--CC-CCChh---hHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 021783          148 LQNAE--GS-GLAPF---DCWICLRGVKTMALRVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       148 ~~~~~--~~-~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~  192 (307)
                      .--..  +. .+...   ...+..+.-..++...++..+|++.|.+.|..+
T Consensus       253 aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~  303 (413)
T COG0112         253 AVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER  303 (413)
T ss_pred             hcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc
Confidence            32111  11 11111   111222223456778888999999999999875

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.69  E-value=1.3e-15  Score=142.51  Aligned_cols=172  Identities=21%  Similarity=0.227  Sum_probs=125.8

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcC---CCceEEEEeCCCCCcccccc-HHHHH
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG---PWTKLVWVESPTNPRQQICD-IRKIA   83 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~-~~~l~   83 (307)
                      ..++|+++...|++..    ..++..|++++.++.+     |+++|++.++   +++++|++++|+| +|.+.+ +++|.
T Consensus       577 ~R~~vlip~saHgtnP----asa~~~G~~Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~  651 (939)
T TIGR00461       577 HRNICLIPVSAHGTNP----ASAAMAGMQVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHAC  651 (939)
T ss_pred             CCCEEEEEccccCcCH----HHHHHCCCEEEEeccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHH
Confidence            3568999999998776    5577889999999974     8999999997   4899999999999 799877 99999


Q ss_pred             HHHHHcCCEEEEeCccCCCC--cCCccCCCccEEEeccccccc-----cCCCceeEEEEEcChhHHHHHHHH---H----
Q 021783           84 EMAHAHGALLLVDNSIMSPV--LSRPLELGADIVMHSATKFIA-----GHSDVMAGVLAVKGERLAKELYFL---Q----  149 (307)
Q Consensus        84 ~~~~~~~~~li~D~a~~~~~--~~~~~~~~~d~~~~s~~K~~~-----g~~g~~~G~~~~~~~~~~~~~~~~---~----  149 (307)
                      ++||++|.++++|+++..+.  ...+.++|+|++++|.||+|+     |++|  .|++.+++... ..+...   .    
T Consensus       652 ~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg--~G~i~vr~~L~-~~lPg~~v~~t~d~  728 (939)
T TIGR00461       652 DIVHSFGGQVYLDGANMNAQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPG--MGPIGVKSHLI-PFLPKHDVVSMITG  728 (939)
T ss_pred             HHHHHcCCEEEEEecChhhCCCCCCccccCCCEEEecCCccCCCCCCCCCCC--eEEEEEhhhch-hhcCCCcccccccC
Confidence            99999999999999996533  347788999999999999887     5555  79999996422 221100   0    


Q ss_pred             ---Hh-cC---C-CCCh----hhHH--HHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 021783          150 ---NA-EG---S-GLAP----FDCW--ICLRGVKTMALRVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       150 ---~~-~~---~-~~~~----~~~~--~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~  192 (307)
                         .. .+   + ....    ...|  +...|-+.+++..+....+++++.++|+..
T Consensus       729 ~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~  785 (939)
T TIGR00461       729 IGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDH  785 (939)
T ss_pred             CCCccccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence               00 00   0 0001    2222  333344556665666677888888888754

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PLN02590 probable tyrosine decarboxylase

Probab=99.68  E-value=4e-15  Score=133.53  Aligned_cols=174  Identities=16%  Similarity=0.202  Sum_probs=123.1

Q ss_pred             eEEEcCCCCcchHHHHhhhcccCCc---EEEEecCC-------ChHHHHhhcCC------CceEEEEeCCCCCccccccH
Q 021783           16 EIVAGDDLYGGTDRLLSRVTPKTGV---VVKRVNTC-------DLDEVASAIGP------WTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus        16 ~Vlv~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~-------d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~~   79 (307)
                      .|.+++..|.+..    ++++..|+   +++.||.+       |+++|+++|..      .+-+|+.+..+..+|.+-|+
T Consensus       231 vvy~S~~aH~Sv~----KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl  306 (539)
T PLN02590        231 VVYGSDQTHSSFR----KACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPL  306 (539)
T ss_pred             EEEecCCchHHHH----HHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCH
Confidence            5667888998877    66777776   46666653       78999999852      35677777888899999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCcc------C-CCccEEEeccccccccCCCceeEEEEEcChhH-HHHHHH---H
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPL------E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERL-AKELYF---L  148 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~------~-~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~-~~~~~~---~  148 (307)
                      ++|.++|++||+|++||+||+......+.      . ..+|.++.++|||+..|.+  +|+++++++.. .+.+..   +
T Consensus       307 ~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~--cg~llvr~~~~l~~a~~~~~~Y  384 (539)
T PLN02590        307 VPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQT--CSPLWVKDRYSLIDALKTNPEY  384 (539)
T ss_pred             HHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcC--EEEEEecCHHHHHHHhhcCHHH
Confidence            99999999999999999999865432211      1 1479999999999988888  99999997632 222111   1


Q ss_pred             HHh-----------------cCCCCChhhHHHHhh--ccccHHHHHHHHHHHHHHHHHHHhcCCCc
Q 021783          149 QNA-----------------EGSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRV  195 (307)
Q Consensus       149 ~~~-----------------~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~l~~~~~~  195 (307)
                      ...                 .+-.......|+.+.  |.+.+....++..+.++.+.+.+++.+.+
T Consensus       385 L~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~f  450 (539)
T PLN02590        385 LEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSF  450 (539)
T ss_pred             hCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence            100                 001122344454443  35677788888888888888888877643

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.68  E-value=2.7e-15  Score=119.86  Aligned_cols=250  Identities=20%  Similarity=0.252  Sum_probs=166.9

Q ss_pred             CcHHHHHHH-hcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcC--------CCceEEEE
Q 021783            1 MAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG--------PWTKLVWV   66 (307)
Q Consensus         1 ~aal~~~~~-~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~--------~~~~~v~~   66 (307)
                      |.++.+++. +-++|.+|++.+.+|--.+.. ..+....|+.++.+...     |++++++++.        +.|++|.+
T Consensus        82 mgNllaIm~Hc~~rg~eii~gd~~HI~~~E~-gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIcl  160 (384)
T KOG1368|consen   82 MGNLLAIMVHCHQRGSEIIVGDRAHIHRYEQ-GGISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICL  160 (384)
T ss_pred             cccHHHHHHHhcCCCceEEeccchheeehhc-cChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEe
Confidence            567777777 456999999999988544422 24456678888887652     8999999987        45899999


Q ss_pred             eCCCCCcc-cccc---HHHHHHHHHHcCCEEEEeCccC------CCCcCCccCCCccEEEeccccccccCCCceeEEEEE
Q 021783           67 ESPTNPRQ-QICD---IRKIAEMAHAHGALLLVDNSIM------SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAV  136 (307)
Q Consensus        67 ~~~~n~tG-~~~~---~~~l~~~~~~~~~~li~D~a~~------~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~  136 (307)
                      ++.+|.+| .++|   +.++.++|++||+.++.|+|--      .|..-.-.....|.+.-.+||.++.|-   +.++++
T Consensus       161 ENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPV---GSViVG  237 (384)
T KOG1368|consen  161 ENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPV---GSVIVG  237 (384)
T ss_pred             eccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCc---ccEEEc
Confidence            98877777 7777   6688899999999999999952      222111112247888889999997663   345555


Q ss_pred             cChhHHHHHHHHHHhcC--CCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhh
Q 021783          137 KGERLAKELYFLQNAEG--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS  214 (307)
Q Consensus       137 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~  214 (307)
                      +++ ......+.....|  ...+...+..++-++..-...++.-++.++.+.+++...+.+ .+..+..           
T Consensus       238 ~k~-FI~kA~~~RKalGGGmRQsGvLaaaaLval~~~~~~L~~dHk~A~~lAe~~~~~~~i-~v~v~a~-----------  304 (384)
T KOG1368|consen  238 SKD-FIDKARHFRKALGGGMRQSGVLAAAALVALDENVPLLRADHKRAKELAEYINTPEEI-RVEVPAV-----------  304 (384)
T ss_pred             cHH-HHHHHHHHHHHhcCchhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhccccce-eeecchh-----------
Confidence            555 4444444443333  345555666666666655556677788888899888755433 1222211           


Q ss_pred             hccCCCceEEEEe-CCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----C
Q 021783          215 QAKGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----E  289 (307)
Q Consensus       215 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~  289 (307)
                          ..+++.+.+ .+.-.++.+.+.++.+||..-.|..+                           .+||.+..    +
T Consensus       305 ----etNiv~~~l~q~~~~~~~l~~~~~k~gi~lm~~~s~---------------------------r~Rivlh~Qvt~~  353 (384)
T KOG1368|consen  305 ----ETNIVNMVLCQARLTAEELCKFLEKNGILLMGGASR---------------------------RIRIVLHHQVTDE  353 (384)
T ss_pred             ----hcceeeeecccccCCHHHHHHHHHHCCeEEeecccc---------------------------ceEEEEEEecCHH
Confidence                234555444 22234888999999999977665542                           28999976    5


Q ss_pred             ChHHHHHHH
Q 021783          290 DVNDLISDL  298 (307)
Q Consensus       290 ~~~~~i~~l  298 (307)
                      +.+..+..|
T Consensus       354 ~ve~~~~~~  362 (384)
T KOG1368|consen  354 DVEYVKSVL  362 (384)
T ss_pred             HHHHHHHHH
Confidence            555555555

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.68  E-value=2.4e-15  Score=143.00  Aligned_cols=128  Identities=24%  Similarity=0.296  Sum_probs=103.5

Q ss_pred             HHHHHh-cCC--CCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHH
Q 021783            5 AAVTHL-LGT--GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRK   81 (307)
Q Consensus         5 ~~~~~~-~~~--gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~   81 (307)
                      ++++++ .++  +|+|++++.+|+++...|...++..|++++.++..+  ++.   ..++..+++++|+ .+|.+.|+++
T Consensus       153 a~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~--d~~---~~~~~~vlvq~p~-~~G~i~d~~~  226 (954)
T PRK05367        153 AMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAK--ALD---HDDVFGVLLQYPG-TSGEVRDYTA  226 (954)
T ss_pred             HHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCcc--CCC---cccEEEEEEecCC-CCeeeccHHH
Confidence            344443 344  499999999999999999988999999999999753  111   3456666666764 5899999999


Q ss_pred             HHHHHHHcCCEEEEeCcc-CCCCcCCccCCCccEEEeccccc-----cccCCCceeEEEEEcChhH
Q 021783           82 IAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKF-----IAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        82 l~~~~~~~~~~li~D~a~-~~~~~~~~~~~~~d~~~~s~~K~-----~~g~~g~~~G~~~~~~~~~  141 (307)
                      |.++||++|+++++|..+ +.+....+.++|+|++++|.|||     ++|| +  .|+++++++..
T Consensus       227 i~~~ah~~Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qkfg~P~g~GGP-~--aGflavr~~~~  289 (954)
T PRK05367        227 LIAAAHARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRFGVPMGFGGP-H--AAYFAVRDAYK  289 (954)
T ss_pred             HHHHHHHcCCEEEEEehhhhccCCCChhhcCCCEEEeeCcccCCCCCCCCC-C--EEEEEECHHHH
Confidence            999999999999999988 44555588999999999999999     7776 5  99999997643

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.68  E-value=3.7e-16  Score=124.57  Aligned_cols=252  Identities=18%  Similarity=0.210  Sum_probs=155.2

Q ss_pred             HHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChH-HHHhhcCCCceEEEEeCCCCCccccccHHHH
Q 021783            4 LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLD-EVASAIGPWTKLVWVESPTNPRQQICDIRKI   82 (307)
Q Consensus         4 l~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~-~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l   82 (307)
                      .+++-+++.|.|-|+.....|.+....+ .+++    +...+++-|++ .+.++.+-+-++|..+...++.|.+.|+++|
T Consensus       141 ag~feail~pedAvfSDeLNhASIIdGi-rLck----ry~h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaPl~ei  215 (417)
T KOG1359|consen  141 AGAFEAILTPEDAVFSDELNHASIIDGI-RLCK----RYRHVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAPLEEI  215 (417)
T ss_pred             hHHHHHhcChhhhhhccccccchhhhhh-HHHh----hhccchhHHHHHHHHHhhhheEEEEEecceeccCCCcccHHHH
Confidence            3556667888888888888887776333 2333    22233333443 2334444577888888999999999999999


Q ss_pred             HHHHHHcCCEEEEeCccCCCCcC-Ccc--------CCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHh--
Q 021783           83 AEMAHAHGALLLVDNSIMSPVLS-RPL--------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--  151 (307)
Q Consensus        83 ~~~~~~~~~~li~D~a~~~~~~~-~~~--------~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~--  151 (307)
                      .+++++||.++++|++|+.|.+. ...        .-.+|++.++++|.++|..   +|+..++++ +...++...+.  
T Consensus       216 ~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~---GGyttgp~~-li~llrqr~Rpyl  291 (417)
T KOG1359|consen  216 SQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGAS---GGYTTGPKP-LISLLRQRSRPYL  291 (417)
T ss_pred             HHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCC---CCCccCChh-HHHHHHhcCCcee
Confidence            99999999999999999976653 111        1247999999999997665   799999876 43444333222  


Q ss_pred             cCCCCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC
Q 021783          152 EGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  228 (307)
Q Consensus       152 ~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  228 (307)
                      ...++++...-....++..   -..-.+..+.+.++.++..+..    .+...+               ...++..+.+.
T Consensus       292 FSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~a----GftIsg---------------~~hPI~pv~lG  352 (417)
T KOG1359|consen  292 FSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAA----GFTISG---------------ASHPICPVMLG  352 (417)
T ss_pred             ecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc----CceecC---------------CCCCccceecc
Confidence            2223333221111111111   1222344455666666665533    221211               12356677778


Q ss_pred             CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 021783          229 SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  303 (307)
Q Consensus       229 ~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  303 (307)
                      +...+.+..+++...||.|-.      .++|..+..              .-.+|+.++..+.++.++.+.+++.
T Consensus       353 da~lA~~~ad~lLk~Gi~Vig------fs~PvVP~g--------------kariRVqiSAaHt~edid~~i~Af~  407 (417)
T KOG1359|consen  353 DARLASKMADELLKRGIYVIG------FSYPVVPKG--------------KARIRVQISAAHTEEDIDRLIEAFS  407 (417)
T ss_pred             cHHHHHHHHHHHHhcCceEEe------ecCCcCCCC--------------ceEEEEEEehhcCHHHHHHHHHHHH
Confidence            877788888888888987754      223333222              2348888887555555555555443

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.67  E-value=8.4e-16  Score=132.58  Aligned_cols=178  Identities=22%  Similarity=0.303  Sum_probs=121.1

Q ss_pred             HHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----------Ch-----HHHHhhcC--CCceE---
Q 021783            4 LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----------DL-----DEVASAIG--PWTKL---   63 (307)
Q Consensus         4 l~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----------d~-----~~l~~~l~--~~~~~---   63 (307)
                      .++++++++|||+|+++..+|-+..    ..+...|+++++++..          ++     ++++++++  +..+.   
T Consensus        96 ~a~i~a~~~~gd~VLv~RN~HkSv~----~alil~ga~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~  171 (417)
T PF01276_consen   96 QAMIMALCRPGDKVLVDRNCHKSVY----NALILSGAIPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRL  171 (417)
T ss_dssp             HHHHHHHTTTTCEEEEETT--HHHH----HHHHHHTEEEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESE
T ss_pred             HHHHHHhcCCCCEEEEcCCcHHHHH----HHHHHcCCeEEEecCCccccCCccCCChhhhhHHHHHHHHHhCccccCceE
Confidence            4788899999999999999999998    6677889999999862          44     88888886  44444   


Q ss_pred             EEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCccCCCC----cC-CccCCCcc-------EEEeccccccccCCCcee
Q 021783           64 VWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV----LS-RPLELGAD-------IVMHSATKFIAGHSDVMA  131 (307)
Q Consensus        64 v~~~~~~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~----~~-~~~~~~~d-------~~~~s~~K~~~g~~g~~~  131 (307)
                      +++++|+. .|.+.|+++|+++|++++++|++|+||+.-.    ++ .....|+|       +++.|+||.+.+.+-  .
T Consensus       172 vvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~a~~~gad~~~~~~~~vvqS~HKtL~altQ--t  248 (417)
T PF01276_consen  172 VVLTSPTY-YGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRSALALGADRPNDPGIIVVQSTHKTLPALTQ--T  248 (417)
T ss_dssp             EEEESS-T-TSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT---
T ss_pred             EEEeCCCC-CeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccchhhccCccccccceeeeechhhccccccc--c
Confidence            99999987 6999999999999999999999999997421    12 45567889       999999999987765  8


Q ss_pred             EEEEEcChh-H-HHHHHHHHHhcCCCCChhhHHHHhhccc----c-----HHHHHHHHHHHHHHHHHHHhc
Q 021783          132 GVLAVKGER-L-AKELYFLQNAEGSGLAPFDCWICLRGVK----T-----MALRVEKQQDNAQKIAEFLAS  191 (307)
Q Consensus       132 G~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~-----~~~~~~~~~~~~~~l~~~l~~  191 (307)
                      +++..+.+. + .+.+........++.+   .+..++.++    .     -+..+++..+.++.+++.+++
T Consensus       249 s~lh~~~~~~v~~~~~~~~l~~~~TTSP---SY~lmASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~  316 (417)
T PF01276_consen  249 SMLHVKGDRIVDHERVNEALSMHQTTSP---SYPLMASLDVARAQMEEEEGRELLEEAIELAEEFRKKINR  316 (417)
T ss_dssp             EEEEEETCCCTTHHHHHHHHHHHS-SS-----HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecCCCcccHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            999998774 3 3444443333322211   122222211    1     123455666677777777743

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.66  E-value=8.3e-15  Score=129.43  Aligned_cols=247  Identities=15%  Similarity=0.194  Sum_probs=147.2

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhccc------CC---cEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccc-----c
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTPK------TG---VVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC-----D   78 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~~------~g---~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~-----~   78 (307)
                      .+.+|+..+..|.+...........      ++   ..+..++.+|++++++.+.+++++|+++ |.+++|-+.     .
T Consensus       127 ~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aaviiE-Pv~~~gg~~~~~~~~  205 (406)
T PRK12381        127 HKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDDQTCAVIVE-PIQGEGGVIPADKAF  205 (406)
T ss_pred             CCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccCCeeEEEEe-CCcCCCCCcCCCHHH
Confidence            4567888787777665321111110      00   1245567789999999998889999987 556666532     3


Q ss_pred             HHHHHHHHHHcCCEEEEeCccC-CCCcCCc---cCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCC
Q 021783           79 IRKIAEMAHAHGALLLVDNSIM-SPVLSRP---LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS  154 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~-~~~~~~~---~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~  154 (307)
                      +++|.++|++||+++|+||+|. .+.....   ..++.+.-+.|++|.++  +|.++|+++++++ +.+.+.........
T Consensus       206 l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi~t~sK~l~--gG~~ig~~~~~~~-~~~~~~~~~~~~t~  282 (406)
T PRK12381        206 LQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTTAKALG--GGFPIGAMLTTEK-CASVMTVGTHGTTY  282 (406)
T ss_pred             HHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCEEEehhhhh--CCCceEEEEEcHH-HHhhcCCCCCCCCC
Confidence            9999999999999999999984 2221111   12233222468999995  4788999999855 44444322222222


Q ss_pred             CCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH--
Q 021783          155 GLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--  230 (307)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--  230 (307)
                      ..++..+..+.+.++.+..  ..++..+..+.+.+.|++...  .  ++..          ...++.|.++++.+.+.  
T Consensus       283 ~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~--~--~~~~----------~~vrg~Gl~~~~~l~~~~~  348 (406)
T PRK12381        283 GGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINA--R--YGLF----------SEIRGLGLLIGCVLNAEYA  348 (406)
T ss_pred             CCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh--h--CCCE----------EEEecCeEEEEEEecCchh
Confidence            3455555555555543321  233334444444444443210  0  0000          11244577888877542  


Q ss_pred             HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          231 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       231 ~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                      .....+.+.+.++||.+....                           ++.+|++++.    +++++.++.|.+++++
T Consensus       349 ~~~~~~~~~l~~~Gv~v~~~g---------------------------~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~  399 (406)
T PRK12381        349 GKAKQISQEAAKAGVMVLIAG---------------------------PNVVRFAPALNISEEEITTGLDRFARACER  399 (406)
T ss_pred             hHHHHHHHHHHHCCcEEeeCC---------------------------CCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence            246778888888898774311                           2359999875    6777777888777754

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.65  E-value=2.6e-15  Score=132.51  Aligned_cols=172  Identities=23%  Similarity=0.221  Sum_probs=129.5

Q ss_pred             eEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceE--EEEeCCCCCccccccHHHHHHHHH
Q 021783           16 EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKL--VWVESPTNPRQQICDIRKIAEMAH   87 (307)
Q Consensus        16 ~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~--v~~~~~~n~tG~~~~~~~l~~~~~   87 (307)
                      +|++|...|++..    +++...|+..+.++.+      |+++++++++.++..  |+.+..++++|.+-|+++|.++|+
T Consensus       159 ~ii~s~~aH~s~~----Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~  234 (460)
T COG0076         159 NIVCSETAHFSFE----KAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAE  234 (460)
T ss_pred             eEEecCcchhHHH----HHHHHhCCCceeEEeccCccccCHHHHHHHHHhhccCceEEEEecCCCCCccCCHHHHHHHHH
Confidence            6999999998888    7788888887777763      899999999977666  888889999999999999999999


Q ss_pred             HcCCEEEEeCccCCCCcC--C------ccCCCccEEEeccccccccCCCceeEEEEEcCh-hHHHHHHHHHHhcC-----
Q 021783           88 AHGALLLVDNSIMSPVLS--R------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-RLAKELYFLQNAEG-----  153 (307)
Q Consensus        88 ~~~~~li~D~a~~~~~~~--~------~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~-~~~~~~~~~~~~~~-----  153 (307)
                      ++++++|+|+|++....+  .      ..-.++|.++.|+||++..|.|  +|+++.+++ .+.+.........+     
T Consensus       235 ~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~--~G~il~rd~e~l~~~~~~~~~yl~~~~~~  312 (460)
T COG0076         235 EYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIG--CGVVLFRDEEALRRILIFADYYLPGGGIP  312 (460)
T ss_pred             HcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCC--ceEEEEECHHHhhhhhhcccccCCCCCcC
Confidence            999999999999865442  1      1112689999999999999998  999999988 34444332222211     


Q ss_pred             ------CCCC--hhhHHHHhh--ccccHHHHHHHHHHHHHHHHHHHhcCC
Q 021783          154 ------SGLA--PFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHP  193 (307)
Q Consensus       154 ------~~~~--~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~l~~~~  193 (307)
                            +.+.  ...+|..+.  +.+.+....++..++++.+.+.+++.+
T Consensus       313 ~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~  362 (460)
T COG0076         313 NFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLG  362 (460)
T ss_pred             ceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence                  1111  233444333  346677777777888888888888764

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.65  E-value=1.4e-14  Score=137.33  Aligned_cols=127  Identities=23%  Similarity=0.222  Sum_probs=99.2

Q ss_pred             HHHHHh-cCC--CCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHH
Q 021783            5 AAVTHL-LGT--GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRK   81 (307)
Q Consensus         5 ~~~~~~-~~~--gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~   81 (307)
                      +++++. +++  +|+|++++..|+++...|...++..|++++.+|..+.+    .....+..+++..|++ +|.+.|+++
T Consensus       180 a~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~~----~~~~~v~~vlvq~P~~-~G~v~dv~~  254 (993)
T PLN02414        180 AMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDFD----YSSGDVCGVLVQYPAT-DGEVLDYAE  254 (993)
T ss_pred             HHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhhc----cccCceEEEEEecCCC-CeEEcCHHH
Confidence            344443 454  48899999999999999999999999999999875422    1233455555555554 899999999


Q ss_pred             HHHHHHHcCCEEEEeCccCCCCc--CCccCCCccEEEecccccc-----ccCCCceeEEEEEcChh
Q 021783           82 IAEMAHAHGALLLVDNSIMSPVL--SRPLELGADIVMHSATKFI-----AGHSDVMAGVLAVKGER  140 (307)
Q Consensus        82 l~~~~~~~~~~li~D~a~~~~~~--~~~~~~~~d~~~~s~~K~~-----~g~~g~~~G~~~~~~~~  140 (307)
                      |.++||++|+++++ +++..+..  ..+.++|+|+++++.+||.     +||.   .|+++++++.
T Consensus       255 I~~~ah~~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg~P~G~GGP~---aGflavr~~~  316 (993)
T PLN02414        255 FVKNAHANGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGYGGPH---AAFLATSQEY  316 (993)
T ss_pred             HHHHHHHcCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccccCCCCCCCC---eeEEEECHHH
Confidence            99999999999999 77765443  3688999999999999997     5543   7999999764

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.65  E-value=1.4e-14  Score=126.87  Aligned_cols=244  Identities=16%  Similarity=0.158  Sum_probs=140.4

Q ss_pred             CCCCeEEEcCCCCcch-HHHHhh-----hcccCCc---EEEEecCCChHHHHhhcCCCceEEEEeCCCCCcccccc----
Q 021783           12 GTGEEIVAGDDLYGGT-DRLLSR-----VTPKTGV---VVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD----   78 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~~-~~~~~~-----~~~~~g~---~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~----   78 (307)
                      ..+++|++.+..|.+. ...+..     ..+.++.   .+...+.+|++++++.+++++++|++++++|++|...+    
T Consensus       108 ~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~l~~~~a~vi~e~v~~~~G~~~~~~~~  187 (375)
T PRK04260        108 TGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKALVNKNTAAVMLELVQGESGVLPADKDF  187 (375)
T ss_pred             cCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHHHHHHhcCCCeEEEEECCeECCCCCcCCCHHH
Confidence            4567888877776543 222110     0111111   12233456899999998888899999999999998865    


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCC-CCcCCc---cCC--CccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhc
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMS-PVLSRP---LEL--GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE  152 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~-~~~~~~---~~~--~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~  152 (307)
                      ++++.++|+++|+++|+|++|.. +.....   ..+  ..|  +.||||.++  +|+++|+++++++ +.+.+.......
T Consensus       188 l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pd--i~t~sK~l~--~G~~ig~~~~~~~-~~~~~~~~~~~~  262 (375)
T PRK04260        188 VKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPD--IFTLAKGLA--NGVPVGAMLAKSS-LGGAFGYGSHGS  262 (375)
T ss_pred             HHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCC--EEEeccccc--CCcceEEEEEcHH-HHhhcCCCCCCC
Confidence            89999999999999999999852 111111   122  245  458999994  3678999999855 433332211112


Q ss_pred             CCCCChhhHHHHhhccccHH--HHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH
Q 021783          153 GSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  230 (307)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (307)
                      ....++..+..+.+.++.+.  ...++..+..+.+.+.+.+...  .  .+.+.          ..++.+.++++.+.. 
T Consensus       263 t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~--~~~~~----------~~~~~g~~~~~~~~~-  327 (375)
T PRK04260        263 TFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQ--D--KETVT----------TVRGLGYMIGIETTA-  327 (375)
T ss_pred             CCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh--h--CCCee----------EEeccceEEEEEecC-
Confidence            22234455555555554332  2223333333444444432100  0  00000          012357788888732 


Q ss_pred             HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 021783          231 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  303 (307)
Q Consensus       231 ~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  303 (307)
                       ....+.+.+.++||.+.++.                           .+.+|++++....++.++.+.+.++
T Consensus       328 -~~~~~~~~l~~~Gi~v~~~~---------------------------~~~lR~~~~~~~t~~~i~~~l~~l~  372 (375)
T PRK04260        328 -DLSQLVEAARDKGLIVLTAG---------------------------TNVIRLLPPLTLTKEEIEQGIAILS  372 (375)
T ss_pred             -cHHHHHHHHHhCCCEEecCC---------------------------CCEEEEcCCCccCHHHHHHHHHHHH
Confidence             35678888888898775321                           2459999976444444444444443

>PLN00144 acetylornithine transaminase

Probab=99.63  E-value=6.4e-15  Score=128.83  Aligned_cols=221  Identities=16%  Similarity=0.177  Sum_probs=136.3

Q ss_pred             EEEecCCChHHHHhhcC-CCceEEEEeCCCCCccccc--c--HHHHHHHHHHcCCEEEEeCccCC-CCcC---CccCCCc
Q 021783           42 VKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQIC--D--IRKIAEMAHAHGALLLVDNSIMS-PVLS---RPLELGA  112 (307)
Q Consensus        42 ~~~v~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~--~--~~~l~~~~~~~~~~li~D~a~~~-~~~~---~~~~~~~  112 (307)
                      +..+|.+|++.+++.+. .++++|+++..+||.|...  .  +++|.++|++||+++|+||+|.. +...   ....++.
T Consensus       148 ~~~~~~~d~~~l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~  227 (382)
T PLN00144        148 VTFVEYGNLEAARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGV  227 (382)
T ss_pred             eEEeCCCCHHHHHHhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCC
Confidence            45667779999999886 5788999998899855554  2  89999999999999999999862 2211   1112233


Q ss_pred             cEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 021783          113 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       113 d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~  192 (307)
                      +--+.+++|.++  +|+++|+++++++ +.+.+...........++..+..+.+.++.++.  ..+.++++.+.+.+.+.
T Consensus       228 ~PDi~t~sK~l~--~G~pig~v~~~~~-~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~--~~~~~~~~~~g~~l~~~  302 (382)
T PLN00144        228 EPDIMTLAKPLA--GGLPIGAVLVTEK-VASAINPGDHGSTFAGGPLVCNAALAVLDKISK--PGFLASVAKKGEYLREL  302 (382)
T ss_pred             CCCEEEeccccc--CCcceEEEEEcHH-HHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHH
Confidence            333788999995  3688999999855 444333222222334455556666655544422  23333444443333211


Q ss_pred             CCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHH
Q 021783          193 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR  272 (307)
Q Consensus       193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~  272 (307)
                      -      ...+..+|.+.    ..++.|.++++.+..  ....+.+.+..+|+.+.++..                    
T Consensus       303 l------~~~~~~~~~~~----~vrg~G~~~~l~l~~--~~~~~~~~~~~~Gv~i~~~~~--------------------  350 (382)
T PLN00144        303 L------RRKLGGNPHVK----EVRGVGLLVGIQLDV--PAGPLVDACRDSGLLVLTAGK--------------------  350 (382)
T ss_pred             H------HHHHhhCCCce----eeecCceEEEEEecC--ccHHHHHHHHHCCeEEeecCC--------------------
Confidence            0      00001111100    113467888888832  256777888888997765321                    


Q ss_pred             HhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          273 QARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       273 ~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                            .+.+|++++.    +++++.++.|.+++.++
T Consensus       351 ------~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~~  381 (382)
T PLN00144        351 ------GDVVRLVPPLVISEAELEQAVEILADCLPAL  381 (382)
T ss_pred             ------CCEEEEeCCCccCHHHHHHHHHHHHHHHHhc
Confidence                  2459999986    67777888888887654

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.63  E-value=3.2e-14  Score=115.30  Aligned_cols=252  Identities=17%  Similarity=0.189  Sum_probs=160.8

Q ss_pred             CCCCeEEEcCC-CCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcC
Q 021783           12 GTGEEIVAGDD-LYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG   90 (307)
Q Consensus        12 ~~gd~Vlv~~~-~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~~~   90 (307)
                      ++|++|++++- +|++-..+.+..+...+......-.+++++++++++.++.+|++++++.-||...|+.+|-.++|++|
T Consensus       117 ~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~~~~~~~~~P~~~~~~~~dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~g  196 (407)
T COG3844         117 QEGRRVIVSEGDNFPTDLYIAEGLADLLGIGYDLEGVIAPRALEEAITDDVAVVLLSHVNYKTGQLLDMRAITALAHQHG  196 (407)
T ss_pred             CCCceEEeecCCCCCcchhhhcchhhhhcccccceeeeChHHHHHhhccceEEEEeccccccccceeeHHHHHHHHHhcC
Confidence            56888887766 45444444445555544332221224788999999999999999999999999999999999999999


Q ss_pred             CEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH---------------------
Q 021783           91 ALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL---------------------  148 (307)
Q Consensus        91 ~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~---------------------  148 (307)
                      ++++.|=+|+.|..+ +...+|+|+-+++.+|++.|.+|-.+|..+.+ +-.+......                     
T Consensus       197 alv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~-~h~e~~~~~lsgW~gha~pf~m~~~y~p~~g  275 (407)
T COG3844         197 ALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAP-RHRERSWPPLSGWWGHARPFAMEEVYAPGPG  275 (407)
T ss_pred             ceEEeehhcccCCcceeecccCCCeeeeeeceeccCCCCCceeEEecc-ccccccccccccccCCCCcchhhhccCcCcc
Confidence            999999999999988 77788999999999999988777655554443 3222111111                     


Q ss_pred             -HHhcCCCCChhhHHHHhhccccHHH-HHHHHHHHHHHH----HHHHhcCCCccEEecCCCCCCCchHHH-hhhccCCCc
Q 021783          149 -QNAEGSGLAPFDCWICLRGVKTMAL-RVEKQQDNAQKI----AEFLASHPRVKKVNYAGLPEHPGHELH-YSQAKGAGS  221 (307)
Q Consensus       149 -~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~l----~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~  221 (307)
                       .++..++.+.........+|+-+.. .+.++.+..-.|    .+.++.+...    +       ++++. .+....+|+
T Consensus       276 a~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~----~-------~l~l~tPr~~~~rGs  344 (407)
T COG3844         276 ARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEY----Y-------GLTLVTPRAHEERGS  344 (407)
T ss_pred             ccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhcccc----C-------CcEEeccchhhhccc
Confidence             1111222333344444444443311 133333333333    3334333210    0       11111 111234678


Q ss_pred             eEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec-----cCChHHHHH
Q 021783          222 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-----IEDVNDLIS  296 (307)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~-----~~~~~~~i~  296 (307)
                      -+++..+   ++..++++|..+|+-..+.                           .++-+|+.+.     ..|+=..++
T Consensus       345 qvS~~hp---~~~~V~qaLi~rGVigD~R---------------------------~P~vlRfgftPlY~~~~DVw~AV~  394 (407)
T COG3844         345 QVSLYHP---HGYQVMQALIDRGVIGDFR---------------------------EPDVLRFGFTPLYVSFVDVWDAVD  394 (407)
T ss_pred             eeeEecC---cHHHHHHHHHHcCcccccc---------------------------CCCeeeecCccceechhHHHHHHH
Confidence            8888877   3667888888888843321                           1344888884     478889999


Q ss_pred             HHHHHHhcC
Q 021783          297 DLDKALRTG  305 (307)
Q Consensus       297 ~l~~~l~~~  305 (307)
                      .|.++|++.
T Consensus       395 ~L~evL~t~  403 (407)
T COG3844         395 ALEEVLDTL  403 (407)
T ss_pred             HHHHHHHhh
Confidence            999998764

>PLN02624 ornithine-delta-aminotransferase

Probab=99.62  E-value=1.2e-14  Score=130.31  Aligned_cols=218  Identities=12%  Similarity=0.162  Sum_probs=131.8

Q ss_pred             EEEecCCChHHHHhhcC---CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCc---CCc--c
Q 021783           42 VKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVL---SRP--L  108 (307)
Q Consensus        42 ~~~v~~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~---~~~--~  108 (307)
                      +..++.+|++.+++.++   +++++|+++.++|++|.+.+    +++|.++|++||+++|+||+|. .|..   ...  .
T Consensus       203 ~~~~~~~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~  282 (474)
T PLN02624        203 HLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWE  282 (474)
T ss_pred             ceEeCCCCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhc
Confidence            44567778999998885   57889999999999999987    9999999999999999999996 2211   111  1


Q ss_pred             CCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHH
Q 021783          109 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIA  186 (307)
Q Consensus       109 ~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~  186 (307)
                      ....|+++  ++|.++ .++.++|+++.+++ +...+............+..+..+.+.++.+..  ..++..+..+.+.
T Consensus       283 ~i~pDiv~--lsK~lg-gG~~pigav~~~~~-i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~~l~~~~~~~~~~l~  358 (474)
T PLN02624        283 EVRPDVVI--LGKALG-GGVIPVSAVLADKD-VMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELR  358 (474)
T ss_pred             CCCCCEEE--eccccc-CCCCcceeeeecHH-HHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence            22345555  689995 34467899888754 333332211112223445566666666654432  1112222223333


Q ss_pred             HHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC----HHHHHHHHhcCCcceeecCCCCccceeeccccc
Q 021783          187 EFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS----LALSKHVVETTKYFSITVSFGSVKSLISMPCFM  262 (307)
Q Consensus       187 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~  262 (307)
                      +.+++..       ..+   +..   ....++.+.++.+.++.    .+.+..+.+.|.++||.+.++.           
T Consensus       359 ~~L~~l~-------~~~---~~~---i~~vrg~G~~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~p~~-----------  414 (474)
T PLN02624        359 DQLQKIQ-------KQF---PKL---IKEVRGRGLLNAVVLNSPKLGPVSAYDVCLKLKERGLLAKPTH-----------  414 (474)
T ss_pred             HHHHHHH-------HhC---CCc---eEEEEeeEEEEEEEecCCCcChHHHHHHHHHHHhCCeEEecCC-----------
Confidence            3333210       000   000   00113356677776643    2346778888888899775422           


Q ss_pred             CCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHh
Q 021783          263 SHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALR  303 (307)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~  303 (307)
                                      .+++||++.+    +++++.++.|.++++
T Consensus       415 ----------------~~~lR~~p~l~~t~e~id~~l~~L~~~l~  443 (474)
T PLN02624        415 ----------------DTIIRLAPPLSISEDELQECSKALSDVLE  443 (474)
T ss_pred             ----------------CCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence                            3459998754    677777777777764

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.61  E-value=2e-14  Score=127.90  Aligned_cols=245  Identities=14%  Similarity=0.129  Sum_probs=143.7

Q ss_pred             CCCeEEEcCCCCcchHHHHhhh----------------cccCCcEEEEecCCChHHHHhhcC---CCceEEEEeCCCCCc
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRV----------------TPKTGVVVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPR   73 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~----------------~~~~g~~~~~v~~~d~~~l~~~l~---~~~~~v~~~~~~n~t   73 (307)
                      .+++|+...++|.+........                ....+..+..++.+|++++++.+.   +++++|+++...+.+
T Consensus       129 gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~~  208 (423)
T TIGR00713       129 GRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGNM  208 (423)
T ss_pred             CCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCCC
Confidence            4689999999888864211110                001112345566678999999886   578899998444447


Q ss_pred             ccccc----HHHHHHHHHHcCCEEEEeCccCCCCc---CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH
Q 021783           74 QQICD----IRKIAEMAHAHGALLLVDNSIMSPVL---SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  146 (307)
Q Consensus        74 G~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~---~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~  146 (307)
                      |.+.+    +++|.++|++||+++|+||+|.....   .....++.+--+.+++|.++  +|+++|+++++++ +.+.+.
T Consensus       209 G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~pDi~t~sK~l~--~G~pig~v~~~~~-i~~~~~  285 (423)
T TIGR00713       209 GVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEPDLTTLGKIIG--GGLPVGAFGGRRE-IMERLA  285 (423)
T ss_pred             CCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCcchhhhhhhhc--CCCceeeeeEHHH-HHHhhC
Confidence            98876    79999999999999999999953221   11111232222447999994  5788999999855 444443


Q ss_pred             HH---HHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHh----cCCCccEEecCCCCCCCchHHHhhhcc
Q 021783          147 FL---QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAK  217 (307)
Q Consensus       147 ~~---~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~----~~~~~~~~~~~~l~~~~~~~~~~~~~~  217 (307)
                      ..   ........++..+..+.+.++.+..  ..+...+..+.+.+.+.    +++.+.                  ..+
T Consensus       286 ~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------------~v~  347 (423)
T TIGR00713       286 PEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPH------------------TVN  347 (423)
T ss_pred             cCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCCe------------------EEE
Confidence            21   1112224455666666666554332  22333333333333333    221110                  012


Q ss_pred             CCCceEEEEeCC-------------HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEE
Q 021783          218 GAGSVLSFLTGS-------------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI  284 (307)
Q Consensus       218 ~~~~~~~~~~~~-------------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRi  284 (307)
                      +.+.++.+.+..             ......+.+.+.++|+.+..+..                           +.+|+
T Consensus       348 ~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------------~~~~l  400 (423)
T TIGR00713       348 RVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQF---------------------------EACFL  400 (423)
T ss_pred             eeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecCCc---------------------------cceee
Confidence            245666665531             12244677777778887653221                           12677


Q ss_pred             Eecc--CChHHHHHHHHHHHhcC
Q 021783          285 SVGI--EDVNDLISDLDKALRTG  305 (307)
Q Consensus       285 s~~~--~~~~~~i~~l~~~l~~~  305 (307)
                      ++..  +++++.++.|.++++++
T Consensus       401 ~~~~t~~~i~~~~~~l~~~l~~~  423 (423)
T TIGR00713       401 SAAHTEEDIENTIEAAEEVFAEL  423 (423)
T ss_pred             ECCCCHHHHHHHHHHHHHHHhhC
Confidence            7743  78888899998888653

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.61  E-value=1.7e-13  Score=113.46  Aligned_cols=253  Identities=18%  Similarity=0.182  Sum_probs=148.9

Q ss_pred             CcHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccC--CcEEEEecC----CChHHHHhhcC------CCceEEEEeC
Q 021783            1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT--GVVVKRVNT----CDLDEVASAIG------PWTKLVWVES   68 (307)
Q Consensus         1 ~aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~--g~~~~~v~~----~d~~~l~~~l~------~~~~~v~~~~   68 (307)
                      ||+..++.+.++||+.|++..-.|......  ...+.+  |.++..++.    .++++++..+.      ..+.+++..+
T Consensus        61 ~aN~lal~~~~~~~~~vi~~~~aHi~~~E~--Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~  138 (342)
T COG2008          61 QANQLALAAHCQPGESVICHETAHIYTDEC--GAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLEN  138 (342)
T ss_pred             HHHHHHHHHhcCCCCeEEEeccccceeccc--CcHHHHcCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEee
Confidence            345567777889999999999988555432  222222  355555553    28999999776      2344555555


Q ss_pred             CCCCcccccc---HHHHHHHHHHcCCEEEEeCccC------CCCcCCccCCCccEEEeccccccccCCCceeEEEEEcCh
Q 021783           69 PTNPRQQICD---IRKIAEMAHAHGALLLVDNSIM------SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        69 ~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~------~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      .+|..|.+++   +++|.++||++|+.|+.|++--      .+....-...++|.++.+++|..+.|    +|.++.-+.
T Consensus       139 ~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~----~gAiv~gn~  214 (342)
T COG2008         139 TATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAP----VGAIVFGNR  214 (342)
T ss_pred             ccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcce----eeeEEEcCH
Confidence            5557799997   7788899999999999999942      23111222347999999999999654    455555555


Q ss_pred             hHHHHHHHHHHhcCCCCC--hhhHHHHhhccccHHHHHHHHHHH--HHHHHHHHhcCCCccEEecCCCCCCCchHHHhhh
Q 021783          140 RLAKELYFLQNAEGSGLA--PFDCWICLRGVKTMALRVEKQQDN--AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ  215 (307)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  215 (307)
                      ...+.+.......|..++  .+.+......++.-..+....++|  ++.|.+.+...+              ++++.++ 
T Consensus       215 ~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~~--------------G~~~~~~-  279 (342)
T COG2008         215 DFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVWRLAADHANAMAARLAEGLEAKP--------------GVKLAFP-  279 (342)
T ss_pred             HHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhhhcC--------------CceeccC-
Confidence            565655555444443332  233333334444322333444555  666666665433              3333222 


Q ss_pred             ccCCCceEEEEeCCHH-HHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHH
Q 021783          216 AKGAGSVLSFLTGSLA-LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL  294 (307)
Q Consensus       216 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~  294 (307)
                      +  ..+++.+.++... ........+...|+....++                            ..+|+-.+.+..++.
T Consensus       280 ~--~tN~vf~~l~~~~i~~l~~~~~~~~~~~~~~~~~----------------------------~~vRfvts~a~~~ed  329 (342)
T COG2008         280 V--ETNMVFVRLPESAIEALRLAGALFYRGVLIGAHG----------------------------EIVRFVTSWATSEED  329 (342)
T ss_pred             C--cccEEEEECChHHHHHHHhhchhheeeeeccCCC----------------------------ceEEEEeeccCCHHH
Confidence            1  3567777776432 23333333444444333322                            138888887666666


Q ss_pred             HHHHHHHHhc
Q 021783          295 ISDLDKALRT  304 (307)
Q Consensus       295 i~~l~~~l~~  304 (307)
                      ++.|.+.+++
T Consensus       330 v~~~~~~~~~  339 (342)
T COG2008         330 VDELVAAIKA  339 (342)
T ss_pred             HHHHHHHHHH
Confidence            6666665544

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.61  E-value=6e-14  Score=123.98  Aligned_cols=241  Identities=15%  Similarity=0.220  Sum_probs=143.3

Q ss_pred             CCeEEEcCCCCcch-HHHHhhhcc------cCC---cEEEEecCCChHHHHhhcC---CCceEEEEeCCCCCcccccc--
Q 021783           14 GEEIVAGDDLYGGT-DRLLSRVTP------KTG---VVVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD--   78 (307)
Q Consensus        14 gd~Vlv~~~~~~~~-~~~~~~~~~------~~g---~~~~~v~~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~--   78 (307)
                      .+.|+.....|.+. ...+. ...      .++   ..+..++.+|++++++.+.   +++.+|+++.+++++|...+  
T Consensus       128 ~~~i~~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~  206 (401)
T TIGR01885       128 QAIIVSAKGNFHGRTLGAIS-MSTDPDSRTNFGPYVPGFKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDD  206 (401)
T ss_pred             CCEEEEECCCcCcccHHHHh-CcCCcccccccCCCCCCceEeCCCCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCH
Confidence            45677777776543 32221 111      122   2356677889999998885   56788999999999999986  


Q ss_pred             --HHHHHHHHHHcCCEEEEeCccCC-C---CcC--CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHH
Q 021783           79 --IRKIAEMAHAHGALLLVDNSIMS-P---VLS--RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  150 (307)
Q Consensus        79 --~~~l~~~~~~~~~~li~D~a~~~-~---~~~--~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~  150 (307)
                        +++|.++|++||+++|+||+|.. |   ...  .......|+++  ++|.+++ .+.++|+++.+++ +.+.+.....
T Consensus       207 ~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~--~gK~l~~-g~~~ig~v~~~~~-i~~~~~~~~~  282 (401)
T TIGR01885       207 GYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVL--LGKALSG-GVYPVSAVLADDD-VMLTIKPGEH  282 (401)
T ss_pred             HHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCEEE--eeccccC-CCCCcEEEEEcHH-HHhhccCCCC
Confidence              99999999999999999999842 1   111  11223457665  6699954 4456888888754 4443332111


Q ss_pred             hcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC
Q 021783          151 AEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  228 (307)
Q Consensus       151 ~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  228 (307)
                      .......+..+..+...++.+..  ..++..+....+.+.+++..      .+         +. ...++.+.++.+.++
T Consensus       283 ~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~~~~~~~~~~~L~~l~------~~---------~~-~~~~g~g~~~~i~~~  346 (401)
T TIGR01885       283 GSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRDQLKKLP------KP---------II-TEVRGRGLLNAIVID  346 (401)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcc------CC---------ce-eEEeecCeeEEEEec
Confidence            11222335555555566654432  12233333344444444321      00         00 011345777777774


Q ss_pred             CH---HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHH
Q 021783          229 SL---ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKA  301 (307)
Q Consensus       229 ~~---~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~  301 (307)
                      +.   .....+.+.|.++||.+.++.                           ++.+|+++.+    +++++.++.|.+.
T Consensus       347 ~~~~~~~~~~l~~~l~~~Gv~v~~~~---------------------------~~~lRi~p~l~~t~~~i~~~l~~l~~~  399 (401)
T TIGR01885       347 ESKTGRTAWDLCLKLKEKGLLAKPTH---------------------------GNIIRLAPPLVITEEQLDEGLEIIKKV  399 (401)
T ss_pred             cCcchhHHHHHHHHHHhCCEEEEecC---------------------------CCEEEEeCCccCCHHHHHHHHHHHHHH
Confidence            33   246788888888898764321                           3459999865    5666666666655


Q ss_pred             H
Q 021783          302 L  302 (307)
Q Consensus       302 l  302 (307)
                      +
T Consensus       400 l  400 (401)
T TIGR01885       400 I  400 (401)
T ss_pred             h
Confidence            4

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.60  E-value=5.5e-14  Score=112.68  Aligned_cols=219  Identities=18%  Similarity=0.247  Sum_probs=133.3

Q ss_pred             ChHHHHhhcCCCceEEEEeCCCCCccccc---cHHHHHHHHHHcCCEEEEeCccCCCCcC------CccCCCccEEEecc
Q 021783           49 DLDEVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS------RPLELGADIVMHSA  119 (307)
Q Consensus        49 d~~~l~~~l~~~~~~v~~~~~~n~tG~~~---~~~~l~~~~~~~~~~li~D~a~~~~~~~------~~~~~~~d~~~~s~  119 (307)
                      |.+++.  +...+.+|.++-|.||||++.   .+.+|.++|++||+++++|.||+.+...      .+...++-+.|.|+
T Consensus       170 DF~~l~--i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~w~~NiilC~SL  247 (417)
T COG3977         170 DFEHLH--IGESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPLWNENIILCMSL  247 (417)
T ss_pred             CHHHcc--cccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccccccCCCCEEEEeeh
Confidence            444442  346788999999999999998   3889999999999999999999976532      22233678999999


Q ss_pred             ccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccc-----cHHHH-H-HHHHHHHHHHHHHHhcC
Q 021783          120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK-----TMALR-V-EKQQDNAQKIAEFLASH  192 (307)
Q Consensus       120 ~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~-~-~~~~~~~~~l~~~l~~~  192 (307)
                      ||.  |.+|.|+|.++.+ +.+...+..+.......+..+....+...++     ++.+. + .-..+..+.....+++.
T Consensus       248 SK~--GLPG~R~GIiIan-e~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~  324 (417)
T COG3977         248 SKL--GLPGSRCGIIIAN-EKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRY  324 (417)
T ss_pred             hhc--CCCCcceeEEEcc-HHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence            996  7789999999987 4465555555443332233333333333322     11110 0 00112222222333321


Q ss_pred             -CCccEEecCCCCCCCchHHHhhhccCCCceEEEE-e--CCHHHHHHHHhcCCcceeecCCCCccc-eeecccccCCCCC
Q 021783          193 -PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL-T--GSLALSKHVVETTKYFSITVSFGSVKS-LISMPCFMSHASI  267 (307)
Q Consensus       193 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~l~~~gi~v~~g~~~~-~~~~p~~~~~~~~  267 (307)
                       +.......                +..|.+|.|. +  -+. ...+++++|+..|+.+.+|++|- -...++.  |   
T Consensus       325 lp~~~~~iH----------------kpEGAIFlWLWf~dLPI-tt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewp--H---  382 (417)
T COG3977         325 LPEYRCLIH----------------KPEGAIFLWLWFKDLPI-TTEELYQRLKARGVLMVPGHYFFPGLDKEWP--H---  382 (417)
T ss_pred             cCccceeee----------------cCCcceeehhhhccCCC-CHHHHHHHHHhCeEEEecccccCCCCCCCCC--C---
Confidence             10001111                1134444432 2  233 37889999999999999998742 1211111  1   


Q ss_pred             cHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 021783          268 PVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  304 (307)
Q Consensus       268 ~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  304 (307)
                                ...|+|+|..-  +.++.-+..|.+.+++
T Consensus       383 ----------~hqC~Rmn~~~~~~~ie~Gva~lae~ve~  411 (417)
T COG3977         383 ----------THQCMRMNYVPEPEKIEKGVAILAEEVER  411 (417)
T ss_pred             ----------ccceEEEecCCCHHHHHHHHHHHHHHHHH
Confidence                      25789999964  6778888888777654

>PLN02263 serine decarboxylase

Probab=99.59  E-value=4.6e-13  Score=117.48  Aligned_cols=173  Identities=17%  Similarity=0.181  Sum_probs=128.8

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCC---CceEEEEeCCCCCccccccHHHHHH
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP---WTKLVWVESPTNPRQQICDIRKIAE   84 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~---~~~~v~~~~~~n~tG~~~~~~~l~~   84 (307)
                      +...|++++..|.+..    ++++..|++++.||.+     |+++|++++..   ++.+|+.+..+.++|.+-|+++|.+
T Consensus       177 ~~~vvy~S~~aH~Sv~----KAa~llgi~~~~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~  252 (470)
T PLN02263        177 PDGILYASRESHYSVF----KAARMYRMECVKVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIK  252 (470)
T ss_pred             CCcEEEEcCCccHHHH----HHHHhcCCcceEeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHH
Confidence            4457889999999888    7788899999999974     89999998863   3566777788999999999999999


Q ss_pred             HHHHcCC-----EEEEeCccCCCCcC---Cc----cCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH---
Q 021783           85 MAHAHGA-----LLLVDNSIMSPVLS---RP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ---  149 (307)
Q Consensus        85 ~~~~~~~-----~li~D~a~~~~~~~---~~----~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~---  149 (307)
                      +|+++|+     |+++|+|++....+   ..    ...++|.++.++|||++.|-+  +|+++.+++.+ +.+....   
T Consensus       253 i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~~--cgvll~R~~~~-~~~~~~~~Yl  329 (470)
T PLN02263        253 TLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMP--CGVQITRMEHI-NVLSSNVEYL  329 (470)
T ss_pred             HHHHcCCccCCeeEEEeccchhhHhhhcccccccCCCcCccEEEECCccccCCCcC--EEEEEEehhhH-hhhccChHhh
Confidence            9999997     99999999754432   11    112489999999999988888  99999996543 2111100   


Q ss_pred             -----HhcCCCCC--hhhHHHHhh--ccccHHHHHHHHHHHHHHHHHHHhcC
Q 021783          150 -----NAEGSGLA--PFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       150 -----~~~~~~~~--~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~l~~~  192 (307)
                           ...++...  ....|..+.  |.+.+..+.++..++++.+.+.+++.
T Consensus       330 ~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~  381 (470)
T PLN02263        330 ASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA  381 (470)
T ss_pred             CCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                 11222221  344555443  45677778888888999999988866

>PRK15029 arginine decarboxylase; Provisional

Probab=99.58  E-value=2.9e-14  Score=131.69  Aligned_cols=130  Identities=15%  Similarity=0.183  Sum_probs=106.2

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----------C-----hHHHHhhcC--CCce---
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----------D-----LDEVASAIG--PWTK---   62 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----------d-----~~~l~~~l~--~~~~---   62 (307)
                      .++++++.+++||+|+++..+|-|..    ..+...|+++++++..          +     ++.+++++.  +.++   
T Consensus       234 n~a~i~a~~~~gd~Vlv~RN~HKSv~----~al~L~ga~Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~  309 (755)
T PRK15029        234 NRTIMQACMTDNDVVVVDRNCHKSIE----QGLILTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKA  309 (755)
T ss_pred             HHHHHHHhcCCCCEEEeecccHHHHH----HHHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCchhhhcc
Confidence            34788889999999999999999998    6678899999999742          3     888988885  3444   


Q ss_pred             -----EEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCccCC-----CCcC--Ccc-----C-CCcc-EEEecccccc
Q 021783           63 -----LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS-----PVLS--RPL-----E-LGAD-IVMHSATKFI  123 (307)
Q Consensus        63 -----~v~~~~~~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~-----~~~~--~~~-----~-~~~d-~~~~s~~K~~  123 (307)
                           ++++++|+. .|.+.|+++|+++|+++++++++|+||+.     +.++  ...     . .|+| +++.|+||++
T Consensus       310 ~~~~~avvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL  388 (755)
T PRK15029        310 GQKPSYCVVTNCTY-DGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL  388 (755)
T ss_pred             ccCceEEEEECCCC-cceeeCHHHHHHHHHhcCCeEEEECccccccccCccccccccccccccccCCCceEEEEchhhcc
Confidence                 899999987 69999999999999999999999999973     2222  122     2 6888 9999999999


Q ss_pred             ccCCCceeEEEEEcCh
Q 021783          124 AGHSDVMAGVLAVKGE  139 (307)
Q Consensus       124 ~g~~g~~~G~~~~~~~  139 (307)
                      .+.+-  +.++..+..
T Consensus       389 ~alTQ--aS~LHv~~~  402 (755)
T PRK15029        389 NALSQ--ASYIHVREG  402 (755)
T ss_pred             cchhh--hhhheeCCC
Confidence            77664  888888654

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=7.8e-15  Score=123.52  Aligned_cols=250  Identities=18%  Similarity=0.152  Sum_probs=161.9

Q ss_pred             HHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcC-------CCc-----e-EEEEeCCCCCcc
Q 021783            8 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-------PWT-----K-LVWVESPTNPRQ   74 (307)
Q Consensus         8 ~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~-------~~~-----~-~v~~~~~~n~tG   74 (307)
                      .+++.||.-|+.....|.+..    .-++..|+.++...++|..+|++.+.       |+|     + +|++....++-|
T Consensus       215 p~l~~~gsLIiSDelNHaSi~----~GaRLSgAtiRVfkHNdm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg  290 (519)
T KOG1357|consen  215 PSLLGKGSLIISDELNHASLI----TGARLSGATTRVFRHNDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEG  290 (519)
T ss_pred             ceeecCCcceeeccccchhee----ccccccCceEEEEecCCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccC
Confidence            357889999999999998887    77999999999999999999888876       332     2 555668888999


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCccCCCCcC----------CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHH
Q 021783           75 QICDIRKIAEMAHAHGALLLVDNSIMSPVLS----------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  144 (307)
Q Consensus        75 ~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~----------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~  144 (307)
                      .++++.++.+++++|.++++.|++|+.|...          ..+..++|+++++|.|.+++ .   +|++.++++.++. 
T Consensus       291 ~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga-~---GGyiagsk~lid~-  365 (519)
T KOG1357|consen  291 TIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGA-A---GGYIAGSKELIDY-  365 (519)
T ss_pred             eecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhccc-c---cceecCcHHHHhh-
Confidence            9999999999999999999999999876652          22233579999999999953 3   7999988664433 


Q ss_pred             HHHHHHh--cCCCCChhhHHHHhhcccc---------HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHh
Q 021783          145 LYFLQNA--EGSGLAPFDCWICLRGVKT---------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  213 (307)
Q Consensus       145 ~~~~~~~--~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~  213 (307)
                      +......  -...+++..+.....+++.         -+.+.+++.+|...++..++...    +..-+-+         
T Consensus       366 lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~g----fivyG~~---------  432 (519)
T KOG1357|consen  366 LRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMG----FIVYGNN---------  432 (519)
T ss_pred             hccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCc----EEEecCC---------
Confidence            3222111  1223344333333333322         24456666777776666665542    2222211         


Q ss_pred             hhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHH
Q 021783          214 SQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVND  293 (307)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~  293 (307)
                           .++++-+.+-.......+-+++..++|++..++.      |+              ...-++..|+..+..+..+
T Consensus       433 -----dSpVvplll~~~~k~~~f~r~~l~~nigvVvvgf------Pa--------------tpl~e~r~R~c~Sa~ht~e  487 (519)
T KOG1357|consen  433 -----DSPVVPLLLYGPAKIVAFSREMLERNIGVVVVGF------PA--------------TPLLESRARFCLSASHTKE  487 (519)
T ss_pred             -----CCCcceeeecCcccccHHHHHHHhcCceEEEEeC------CC--------------chHHHhHHHhhhcccccHH
Confidence                 1233333332222245555666667776654333      11              1112445888888877777


Q ss_pred             HHHHHHHHHhc
Q 021783          294 LISDLDKALRT  304 (307)
Q Consensus       294 ~i~~l~~~l~~  304 (307)
                      .++.+.+.+++
T Consensus       488 ~ld~~l~~i~~  498 (519)
T KOG1357|consen  488 DLDRALEVIDR  498 (519)
T ss_pred             HHHHHHHHHhh
Confidence            77776666554

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.57  E-value=1.2e-13  Score=122.85  Aligned_cols=214  Identities=12%  Similarity=0.163  Sum_probs=129.0

Q ss_pred             hHHHHhhcC-----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccCC-CCcC---CccCCCccEEE
Q 021783           50 LDEVASAIG-----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS---RPLELGADIVM  116 (307)
Q Consensus        50 ~~~l~~~l~-----~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~~-~~~~---~~~~~~~d~~~  116 (307)
                      ++++++.+.     ++.++|+++...+..|...+    +++|.++|++||+++|+|++|+. +...   .....+.+..+
T Consensus       184 ~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi  263 (425)
T PRK08088        184 IASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADL  263 (425)
T ss_pred             HHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCE
Confidence            456777764     46788888877665566554    99999999999999999999873 2211   12234566668


Q ss_pred             eccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCC
Q 021783          117 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPR  194 (307)
Q Consensus       117 ~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~  194 (307)
                      .||+|.++  +|+++|+++++++ +.+.+...........++..+..+...++....  ..++..+..+++.+.+.... 
T Consensus       264 ~s~sK~l~--~G~rig~v~~~~~-~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~-  339 (425)
T PRK08088        264 TTFAKSIA--GGFPLAGVTGRAE-VMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGLLAIA-  339 (425)
T ss_pred             EEEecccc--CCCcceeeEecHH-HHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-
Confidence            99999995  5799999999855 444443322223334455556665555543311  11222222222222222110 


Q ss_pred             ccEEecCCCCCCCchHHHhhhccCCCceEEEEeC--------CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCC
Q 021783          195 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHAS  266 (307)
Q Consensus       195 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~  266 (307)
                               ...|.+    ...++.|.++++.+.        +......+...+.+.|+.+.++..              
T Consensus       340 ---------~~~~~~----~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~--------------  392 (425)
T PRK08088        340 ---------EKHPEI----GDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGP--------------  392 (425)
T ss_pred             ---------HhCCCe----EEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCC--------------
Confidence                     001110    012345778888872        234477888888888876543221              


Q ss_pred             CcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          267 IPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       267 ~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                                 ..+.+|++++.    +++++.++.|.++++++
T Consensus       393 -----------~~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~~  424 (425)
T PRK08088        393 -----------YYNVLRILVPLTIEDAQIRQGLEIIAQCFDEA  424 (425)
T ss_pred             -----------CCCEEEEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence                       12459999984    67788888888887654

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.57  E-value=3.8e-13  Score=112.14  Aligned_cols=247  Identities=17%  Similarity=0.166  Sum_probs=128.6

Q ss_pred             CeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcC--CCceEEEEe-CCCCCccccccHHHHHHHH-
Q 021783           15 EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIG--PWTKLVWVE-SPTNPRQQICDIRKIAEMA-   86 (307)
Q Consensus        15 d~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~--~~~~~v~~~-~~~n~tG~~~~~~~l~~~~-   86 (307)
                      =+.|++.|.|.-.+    .+++.+|++.+.||++    |++.+++.+.  +..|.+++. --+||||.+++-+.+.++| 
T Consensus       125 vKfLCPvPGYDRHF----ai~E~~Giemi~VpM~~dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~  200 (425)
T PF12897_consen  125 VKFLCPVPGYDRHF----AITEHFGIEMIPVPMTEDGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAA  200 (425)
T ss_dssp             -EEEEEES--HHHH----HHHHHCT-EEEEEEEETTEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHH
T ss_pred             ceEEecCCCchHHH----HHHHhhCcEEEecCCCCCCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhc
Confidence            36799999998888    7789999999999984    8999999983  788999877 5799999999855444444 


Q ss_pred             ---HHcCCEEEEeCccCCCCcC-C-cc--------------CCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH
Q 021783           87 ---HAHGALLLVDNSIMSPVLS-R-PL--------------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  147 (307)
Q Consensus        87 ---~~~~~~li~D~a~~~~~~~-~-~~--------------~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~  147 (307)
                         ...+..|+.|+||+..++. + ..              .-+..+...|+||.....+|  ++++..+++.+......
T Consensus       201 m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaG--va~~aaS~~Nl~~~~~~  278 (425)
T PF12897_consen  201 MKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAG--VAFFAASEANLAWIKKH  278 (425)
T ss_dssp             S--SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS---EEEEE-HHHHHHHHHH
T ss_pred             CCcCCcCeEEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcc--eeeeecCHHHHHHHHHH
Confidence               3469999999999976652 1 11              11357999999997644445  89999987655544443


Q ss_pred             HHHhcCCCCChhhHHH---Hhhccc-cHHHHHHHHHHHHH----HHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCC
Q 021783          148 LQNAEGSGLAPFDCWI---CLRGVK-TMALRVEKQQDNAQ----KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  219 (307)
Q Consensus       148 ~~~~~~~~~~~~~~~~---~~~~l~-~~~~~~~~~~~~~~----~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (307)
                      +..... +.....+..   .....+ .++..++++.+..+    .+.+.|+++          |..-.++-.|.+ |+ .
T Consensus       279 ~~~~tI-gpdKvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~----------L~~~~~ia~Wt~-P~-G  345 (425)
T PF12897_consen  279 LSVQTI-GPDKVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEE----------LGDGLGIASWTK-PK-G  345 (425)
T ss_dssp             HHHH-S----HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HGTGGTSEEE----S-B
T ss_pred             hcCcee-CccHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHh----------cCCCCCeeEecC-CC-C
Confidence            333222 112122221   111122 22333333332221    122222221          100001111222 22 4


Q ss_pred             CceEEEEeCCHHHHHHHHhcCCcceeecC-CCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCCh---HHHH
Q 021783          220 GSVLSFLTGSLALSKHVVETTKYFSITVS-FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDV---NDLI  295 (307)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~-~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~---~~~i  295 (307)
                      |.+++|...+.- +..+++.+++.||... .|..|..-.-|                  .++.|||.+++...   +..+
T Consensus       346 GYFIsld~~~G~-AkrvV~lakeAGV~LT~AGAtfPyg~DP------------------~D~nIRiAPS~P~leel~~Am  406 (425)
T PF12897_consen  346 GYFISLDVLDGT-AKRVVELAKEAGVALTPAGATFPYGKDP------------------RDSNIRIAPSYPSLEELETAM  406 (425)
T ss_dssp             SS-EEEEESTT--HHHHHHHHHHTTEE---TTTTSGGG--T------------------TS-EEEE--SSS-HHHHHHHH
T ss_pred             ceEEEEecCCCh-HHHHHHHHHHhCceeCCCCCCCCCCCCC------------------CCCcEEecCCCCCHHHHHHHH
Confidence            789999987654 8899999999999654 46654322111                  35779999988544   4444


Q ss_pred             HHHH
Q 021783          296 SDLD  299 (307)
Q Consensus       296 ~~l~  299 (307)
                      +.|.
T Consensus       407 ~~~~  410 (425)
T PF12897_consen  407 DVFA  410 (425)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.56  E-value=5.9e-14  Score=123.51  Aligned_cols=246  Identities=13%  Similarity=0.164  Sum_probs=145.9

Q ss_pred             CeEEEcCCCCcchHHHHhhhc------ccCC---cEEEEecCCChHHHHhhcC-CCceEEEEeCCCCCcccccc-----H
Q 021783           15 EEIVAGDDLYGGTDRLLSRVT------PKTG---VVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICD-----I   79 (307)
Q Consensus        15 d~Vlv~~~~~~~~~~~~~~~~------~~~g---~~~~~v~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~-----~   79 (307)
                      .+|+....+|.+.........      ..++   -.+..+|.+|++.+++.+. .++.+++++.. +++|-+.+     +
T Consensus       132 ~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP~-~~~gg~~~~~~~~l  210 (408)
T PRK04612        132 RVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAGGDVAAVMLEPI-QGEGGVMPAAPGFL  210 (408)
T ss_pred             cEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhCCCCEEEEEECCc-cCCCCCcCCCHHHH
Confidence            468877776666542211110      0011   1235566779999999886 45566666654 44554432     9


Q ss_pred             HHHHHHHHHcCCEEEEeCccCC-CCc---CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCC
Q 021783           80 RKIAEMAHAHGALLLVDNSIMS-PVL---SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  155 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~-~~~---~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~  155 (307)
                      ++|.++|++||+++|+||+|+. +..   ......+.+..+.+++|.++  +|++.|+++++++ +.+.+..........
T Consensus       211 ~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~--~G~piga~~~~~~-~~~~~~~~~~~~t~~  287 (408)
T PRK04612        211 ARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKALG--GGFPIGAMLAGPK-VAETMQFGAHGTTFG  287 (408)
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEcchhc--CCCceEEEEECHH-HHhhhcCCCcCCCCC
Confidence            9999999999999999999962 221   11123466778889999994  4688999988854 444333222222233


Q ss_pred             CChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCC-CccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC--HHH
Q 021783          156 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP-RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LAL  232 (307)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  232 (307)
                      .++..+..+.+.++.++.  +++.++++.+.+++.+.- .+ .-.++.+.          ..++.|.++.+.+..  .+.
T Consensus       288 ~~p~~~aaa~a~L~~~~~--~~l~~~~~~~g~~l~~~l~~l-~~~~~~i~----------~vrg~Gl~~~i~~~~~~~~~  354 (408)
T PRK04612        288 GNPLAAAVARVALRKLAS--PQIAANVARQSAALRAGLEAL-NAEFGVFA----------QVRGRGLMLGAVLAPAHAGQ  354 (408)
T ss_pred             CCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHH-HhhCCCee----------eeeccceEEEEEecCchhhH
Confidence            456667776666665532  233444444444333210 00 00011111          125568888888742  234


Q ss_pred             HHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          233 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       233 ~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                      +..+.+.+.++|+.+...+                           .+.+|+.+.+    +++++.++.|.+++.+
T Consensus       355 a~~i~~~l~~~Gvlv~~~g---------------------------~~~lRl~Ppl~it~eeid~~l~~l~~~l~~  403 (408)
T PRK04612        355 AGAILDLAAEHGLLLLQAG---------------------------PDVLRFVPALNLTDAELADGLARLRLALAD  403 (408)
T ss_pred             HHHHHHHHHHCCeEEeeCC---------------------------CCEEEEcCCccCCHHHHHHHHHHHHHHHHH
Confidence            6778888888888764311                           2448888764    7888888888888764

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.56  E-value=2.9e-13  Score=116.91  Aligned_cols=223  Identities=16%  Similarity=0.160  Sum_probs=143.5

Q ss_pred             cHH-HHHHHhc-CCCCeEEEcCCCCcchHHHHh-hhcccCCc-EEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCC
Q 021783            2 AAL-AAVTHLL-GTGEEIVAGDDLYGGTDRLLS-RVTPKTGV-VVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNP   72 (307)
Q Consensus         2 aal-~~~~~~~-~~gd~Vlv~~~~~~~~~~~~~-~~~~~~g~-~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~   72 (307)
                      +++ +++.+++ ++||+|++.. .| +  .-|. ..++..|+ ++..++..     |+++++.  .   +.|.++|..+.
T Consensus        69 ~a~Eaa~~nl~~~~g~~vLv~g-~F-G--~r~~~eia~~~g~~~v~~l~~~~g~~~~~~~ve~--~---~~v~~vhnETS  139 (374)
T TIGR01365        69 GAVEMALWSMLGCRGVDVLAWE-SF-G--KGWVTDVTKQLKLPDVRVLEAEYGKLPDLKKVDF--K---NDVVFTWNGTT  139 (374)
T ss_pred             HHHHHHHHHcCCCCCCeEEEEC-HH-H--HHHHHHHHHhcCCCCcEEEcCCCCCCCCHHHcCC--C---CCEEEecCCCc
Confidence            456 6677788 5899999854 33 2  2344 66778888 46666542     6777763  1   23678999999


Q ss_pred             ccccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH-----
Q 021783           73 RQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY-----  146 (307)
Q Consensus        73 tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~-----  146 (307)
                      ||...|++++....  ++.++++|++.+.|..+ ++.  ++|++++|.+|++++|+|  .++++.+++.+.+...     
T Consensus       140 TGv~npv~~i~~~~--~~~lliVDavSs~g~~~l~~d--~iDv~~tgsQK~L~~ppG--ls~v~vs~~Al~~~~~~~~y~  213 (374)
T TIGR01365       140 SGVRVPNGDFIPAD--REGLTICDATSAAFAQDLDYH--KLDVVTFSWQKVLGGEGA--HGMLILSPRAVARLESYTPAW  213 (374)
T ss_pred             hheecccccccccc--CCCcEEEEccchhcCCCCChh--HCcEEEEechhccCCCCc--eEEEEECHHHHHHHhhcCCCC
Confidence            99999987666322  48999999999988877 444  499999999999999999  9999999877654221     


Q ss_pred             ---HH-H-------------HhcCCCCChhhHHHHhhcc----c--cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCC
Q 021783          147 ---FL-Q-------------NAEGSGLAPFDCWICLRGV----K--TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL  203 (307)
Q Consensus       147 ---~~-~-------------~~~~~~~~~~~~~~~~~~l----~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l  203 (307)
                         .+ .             .....+++....+.....+    +  .++.+++++.++++.+++.++..... .+    +
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l-~~----~  288 (374)
T TIGR01365       214 PLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWI-HF----L  288 (374)
T ss_pred             CChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCc-cc----C
Confidence               10 0             0111122222333323323    1  47788888999999999999876411 00    1


Q ss_pred             CCCCchHHHhhhccCCCceEEEEeCCHH------H-----HHHHHhcCCcceeecCCCCc
Q 021783          204 PEHPGHELHYSQAKGAGSVLSFLTGSLA------L-----SKHVVETTKYFSITVSFGSV  252 (307)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-----~~~~~~~l~~~gi~v~~g~~  252 (307)
                      ...+.       .+ ...++.+.+.+..      +     ...+.+.++.+||.+..|..
T Consensus       289 ~~~~~-------~r-S~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~  340 (374)
T TIGR01365       289 AETPE-------IR-SNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGSY  340 (374)
T ss_pred             CCChh-------hc-CCCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEecccc
Confidence            00000       01 1234555552211      2     67889899888987776553

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.54  E-value=2.2e-13  Score=119.57  Aligned_cols=213  Identities=19%  Similarity=0.188  Sum_probs=127.9

Q ss_pred             ecCCChHHHHhhcCCCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-C---CCcCCccCCC--ccE
Q 021783           45 VNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-S---PVLSRPLELG--ADI  114 (307)
Q Consensus        45 v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~---~~~~~~~~~~--~d~  114 (307)
                      ++.+|++++++.+.+++++|+++.+++..|...+    +++|.++|++||+++|+|++|+ .   |.......++  .|+
T Consensus       164 ~~~~d~~~l~~~l~~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi  243 (395)
T PRK03715        164 AELNDIASVEKLITDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDI  243 (395)
T ss_pred             eCCchHHHHHHHcCCCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCce
Confidence            3456899999999888999999999999898876    9999999999999999999997 2   2211112233  465


Q ss_pred             EEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcC
Q 021783          115 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       115 ~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~  192 (307)
                        .+++|.+++  |..+|.++++++. .. +............+..+..+.+.++.++.  ..++..+....+.+.|++.
T Consensus       244 --~t~gK~lg~--G~p~~av~~~~~i-~~-~~~~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l  317 (395)
T PRK03715        244 --MTLGKGIGG--GVPLAALLAKAEV-AV-FEAGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLLEL  317 (395)
T ss_pred             --eeehhhhhC--CcceEEEEEcccc-cc-ccCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence              567899964  4457888887653 21 11001111223345566666666665532  2233333333444444322


Q ss_pred             CCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH--HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHH
Q 021783          193 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE  270 (307)
Q Consensus       193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~  270 (307)
                      ..    .+ .+.          ..++.+.++.+.+.+.  .........+...|+.+....                   
T Consensus       318 ~~----~~-~i~----------~vrG~Glm~~i~l~~~~~~~~~~~~~~~~~~Gi~~~~~~-------------------  363 (395)
T PRK03715        318 SE----ER-GLE----------GERGEGLLRALLLGKDIGPQIVEKARDMQPDGLLLNAPR-------------------  363 (395)
T ss_pred             hh----cC-CcC----------eEEcceeEEEEEecCchHHHHHHHHHhccCCCEEEeecC-------------------
Confidence            10    00 011          1245688889988653  122233333444487654211                   


Q ss_pred             HHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          271 VRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       271 ~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                              .+.+|+++.+    +++++.++.|.++++++
T Consensus       364 --------~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~~  394 (395)
T PRK03715        364 --------PNLLRFMPALNVTTEEIDQMIAMLRSVLDKL  394 (395)
T ss_pred             --------CCEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence                    2349999976    67777777777777653

>PLN02452 phosphoserine transaminase

Probab=99.54  E-value=1.5e-13  Score=118.63  Aligned_cols=249  Identities=12%  Similarity=0.058  Sum_probs=160.8

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEec---C-----CChHHHHhhcCCCceEEEEeCCCCCc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN---T-----CDLDEVASAIGPWTKLVWVESPTNPR   73 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~---~-----~d~~~l~~~l~~~~~~v~~~~~~n~t   73 (307)
                      ++ ++++.++++||++++-.....+..  +...++.+|...+...   .     .++++++  .+++.+.+.++|..+.|
T Consensus        83 ~~ea~~~nl~~~~~~~l~~~~G~fg~r--~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~hnETst  158 (365)
T PLN02452         83 QFAAIPLNLCKPGDKADFVVTGSWSKK--AAKEAKKYCKTNVIASGKDEKYTKIPSVSEWE--LTPDAKFVHICANETIH  158 (365)
T ss_pred             HHHHHHHhcCCCCCeEEEEECCHHHHH--HHHHHHHhCCCcEEEecCCCCCCCCCChHHcC--CCCCCcEEEECCCCCCC
Confidence            44 566678899999987766554554  3366777776544431   1     1444432  24578899999999999


Q ss_pred             ccc-ccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH---HH
Q 021783           74 QQI-CDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY---FL  148 (307)
Q Consensus        74 G~~-~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~---~~  148 (307)
                      |+. .|++++.      ++++++|.+++.+..+ ++.++++|+  +|.+|.+ ||+|  .|+++++++.+.+...   .+
T Consensus       159 Gv~~~~~~~i~------~~~lvVDa~Ss~g~~pidv~~~~v~~--~saqK~l-GP~G--l~~v~vr~~~l~~~~~~~~~~  227 (365)
T PLN02452        159 GVEFKDYPDVG------NVPLVADMSSNFLSKPVDVSKYGVIY--AGAQKNV-GPSG--VTIVIIRKDLIGNARPITPGM  227 (365)
T ss_pred             cEecCcccccC------CCeEEEECCccccCcccCHHHcCEEE--Eeccccc-CCCC--eEEEEEcHHHHhhcccCCCch
Confidence            995 6777664      3899999999999887 888888766  6999999 6999  9999999776644211   00


Q ss_pred             -------HHhcC-CCCChhhHHHHhhccc------cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhh
Q 021783          149 -------QNAEG-SGLAPFDCWICLRGVK------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS  214 (307)
Q Consensus       149 -------~~~~~-~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~  214 (307)
                             ..... .+++....+....+++      .++.+.++..+.++.+.+.+++.+++   +....+  +       
T Consensus       228 ~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~---y~~~~~--~-------  295 (365)
T PLN02452        228 LDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGF---YVCPVE--K-------  295 (365)
T ss_pred             hhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCc---ccCCCC--h-------
Confidence                   01111 1223333333333332      34555666677778888888765432   111000  0       


Q ss_pred             hccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEe----ccCC
Q 021783          215 QAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIED  290 (307)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~----~~~~  290 (307)
                      . .....+++|.+++.+..++|++.++.+|+..-.|...                         -+-+|+|.    ..++
T Consensus       296 ~-~rs~~~vsF~~~~~~~~~~f~~~~~~~g~~~~~G~r~-------------------------~gg~R~s~yna~~~~~  349 (365)
T PLN02452        296 S-VRSLMNVPFTLGGSELEAEFVKEAAKAGMVQLKGHRS-------------------------VGGMRASIYNAMPLAG  349 (365)
T ss_pred             H-HhCCeEEEEEcCCchhHHHHHHHHHHCCCcccCCccc-------------------------cCceEEECcCCCCHHH
Confidence            0 1124578898877777899999999999977666530                         11299998    2377


Q ss_pred             hHHHHHHHHHHHhc
Q 021783          291 VNDLISDLDKALRT  304 (307)
Q Consensus       291 ~~~~i~~l~~~l~~  304 (307)
                      ++.+++.++++-++
T Consensus       350 v~~L~~~m~~f~~~  363 (365)
T PLN02452        350 VEKLVAFMKDFQAK  363 (365)
T ss_pred             HHHHHHHHHHHHHh
Confidence            77777777766543

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.54  E-value=1.6e-12  Score=112.79  Aligned_cols=183  Identities=19%  Similarity=0.208  Sum_probs=117.0

Q ss_pred             cHHHHH-HHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC---------------CChHHHHhhcCC----Cc
Q 021783            2 AALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---------------CDLDEVASAIGP----WT   61 (307)
Q Consensus         2 aal~~~-~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------------~d~~~l~~~l~~----~~   61 (307)
                      +|+.++ ...++|||+|  +++.|.....   ......|+.++-++.               .|++++++.+++    ++
T Consensus        97 ~Al~ll~~l~l~pGDeV--psn~~f~Tt~---ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~  171 (450)
T TIGR02618        97 GAENLLSQIAIKPGDYV--PGNMYFTTTR---YHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKI  171 (450)
T ss_pred             HHHHHHHHhCCCCcCEE--CCceeHHHHH---HHHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCccc
Confidence            344333 3468999987  6677755552   224667776666622               189999999974    44


Q ss_pred             eEEEEeCCCCCc-cccc---cHHHHHHHHHHcCCEEEEeCccCCCC--c---------CCcc-------CCCccEEEecc
Q 021783           62 KLVWVESPTNPR-QQIC---DIRKIAEMAHAHGALLLVDNSIMSPV--L---------SRPL-------ELGADIVMHSA  119 (307)
Q Consensus        62 ~~v~~~~~~n~t-G~~~---~~~~l~~~~~~~~~~li~D~a~~~~~--~---------~~~~-------~~~~d~~~~s~  119 (307)
                      ++|.++.++|.. |..+   +++++.++|++||+.+|+|+|+..+.  +         ....       ...+|.++.|+
T Consensus       172 ~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~  251 (450)
T TIGR02618       172 PYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSG  251 (450)
T ss_pred             CceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEee
Confidence            577777777755 7884   58999999999999999999987532  1         1111       12589999999


Q ss_pred             ccccccCCCceeEEEEEcChhHHHHHHHHHHh-cCC----CCChhhHHHHhhccccHH--HHHHHHHHHHHHHHHHHhcC
Q 021783          120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-EGS----GLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       120 ~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~  192 (307)
                      +|..+++.   +|+++.+++.+.+..+..... .|.    .++.-.......+++...  ...+...++++.|.+.|.+.
T Consensus       252 ~Kd~~~~~---GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~~~r~~~a~~La~~L~~~  328 (450)
T TIGR02618       252 KKDCLVNI---GGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYIEHRVKQVRYLGDKLKAA  328 (450)
T ss_pred             ccCCCCCC---ceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHC
Confidence            99997765   699998888887776655322 221    112111111122333221  22333445678888888765

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.53  E-value=2.1e-12  Score=112.49  Aligned_cols=182  Identities=19%  Similarity=0.169  Sum_probs=115.4

Q ss_pred             HHHHHHH-hcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEec------------C---CChHHHHhhcCC----Cce
Q 021783            3 ALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN------------T---CDLDEVASAIGP----WTK   62 (307)
Q Consensus         3 al~~~~~-~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~------------~---~d~~~l~~~l~~----~~~   62 (307)
                      |+.++.. .++|||+|  +...|.....   ......|+..+-++            .   .|++++++.|++    +++
T Consensus       105 Al~ll~~l~v~pGd~V--p~n~~f~Tt~---ahI~~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~  179 (460)
T PRK13237        105 AENLLSRIAIKPGQYV--PGNMYFTTTR---YHQELNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIA  179 (460)
T ss_pred             HHHHHHHhCCCCcCEE--CCccchHhhH---HHHHhCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccC
Confidence            4433333 57999975  5555555542   22456677555442            1   289999999974    344


Q ss_pred             EEEEeCCCCCc-cccc---cHHHHHHHHHHcCCEEEEeCccCCCCc----------C-Cc-c------CCCccEEEeccc
Q 021783           63 LVWVESPTNPR-QQIC---DIRKIAEMAHAHGALLLVDNSIMSPVL----------S-RP-L------ELGADIVMHSAT  120 (307)
Q Consensus        63 ~v~~~~~~n~t-G~~~---~~~~l~~~~~~~~~~li~D~a~~~~~~----------~-~~-~------~~~~d~~~~s~~  120 (307)
                      ++.++.++|.. |..+   +++++.++|++||+.+|+|+|+..+..          . .. .      ....|.+++|++
T Consensus       180 lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~  259 (460)
T PRK13237        180 YICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGK  259 (460)
T ss_pred             ceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCC
Confidence            56666667776 5665   689999999999999999999976521          1 11 0      124799999999


Q ss_pred             cccccCCCceeEEEEEcChhHHHHHHHHHHh-cCC----CCCh-hhHHHHhhccccHH-HHHHHHHHHHHHHHHHHhcC
Q 021783          121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNA-EGS----GLAP-FDCWICLRGVKTMA-LRVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       121 K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~-~~~----~~~~-~~~~~~~~~l~~~~-~~~~~~~~~~~~l~~~l~~~  192 (307)
                      |.+..+.   +|+++++++.+.+..+...-. .|.    .++. ....++....+... ...+...++.+.|.+.|.+.
T Consensus       260 K~~~~~~---GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~~~ri~~~~~l~~~L~~~  335 (460)
T PRK13237        260 KDCLVNI---GGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYIEHRVGQVRYLGEKLLAA  335 (460)
T ss_pred             CCCCCCC---ceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHHHHHHHHHHHHHHHHHHC
Confidence            9996654   799999999888877766322 121    2222 11222222222221 34455567778888888765

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.53  E-value=7.5e-14  Score=123.80  Aligned_cols=212  Identities=11%  Similarity=0.124  Sum_probs=126.5

Q ss_pred             hHHHHhhc-----CCCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccCC-CC---cCCccCCCccEEE
Q 021783           50 LDEVASAI-----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PV---LSRPLELGADIVM  116 (307)
Q Consensus        50 ~~~l~~~l-----~~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~~-~~---~~~~~~~~~d~~~  116 (307)
                      ++.+++.+     .+++.+|+++..+..+|...+    +++|.++|++||+++|+||+|.. +.   ......++....+
T Consensus       182 ~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi  261 (420)
T TIGR00700       182 LAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDL  261 (420)
T ss_pred             HHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCE
Confidence            45566554     257899999998888898875    99999999999999999999862 22   1122233433335


Q ss_pred             eccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCC
Q 021783          117 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPR  194 (307)
Q Consensus       117 ~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~  194 (307)
                      .+++|.++  +|+++|+++++++ +.+.+...........++..+..+.+.++.+..  ..+...+..+.+.+.++....
T Consensus       262 ~~lsK~l~--~G~pig~v~~~~~-i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~  338 (420)
T TIGR00700       262 ITTAKSLA--DGLPLSGVTGRAE-IMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTDRLTTLKA  338 (420)
T ss_pred             EEeecccc--CCcceEEEEecHH-HHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence            56999994  5789999999854 444332222222333445566665555543321  112222222233333332110


Q ss_pred             ccEEecCCCCCCCchHHHhhhccCCCceEEEEeC-------CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCC
Q 021783          195 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI  267 (307)
Q Consensus       195 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~  267 (307)
                                .+|.+    ...++.|.++++.+.       +.+....+.+.+..+|+.+.+++.+              
T Consensus       339 ----------~~~~~----~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f--------------  390 (420)
T TIGR00700       339 ----------VDPRI----GDVRGLGAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMF--------------  390 (420)
T ss_pred             ----------hCCCE----EEeeccceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCC--------------
Confidence                      00100    011345778888762       2344677888888889988765431              


Q ss_pred             cHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHh
Q 021783          268 PVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALR  303 (307)
Q Consensus       268 ~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~  303 (307)
                                 .+++|++++.    +++++.++.|.++|+
T Consensus       391 -----------~~~lRl~p~l~~~~~~l~~~~~~l~~~l~  419 (420)
T TIGR00700       391 -----------GNIIRFLPPLTIGDELLSEGLDILCAILA  419 (420)
T ss_pred             -----------CCEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence                       2459999864    667777777777664

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.52  E-value=3.9e-13  Score=119.78  Aligned_cols=216  Identities=17%  Similarity=0.208  Sum_probs=129.0

Q ss_pred             ChHHHHhhcC-----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccCC-CCcC---CccCCCccEE
Q 021783           49 DLDEVASAIG-----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS---RPLELGADIV  115 (307)
Q Consensus        49 d~~~l~~~l~-----~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~~-~~~~---~~~~~~~d~~  115 (307)
                      +++++++.+.     .++.+|+++......|.+.+    +++|.++|++||+++|+||+|+. |...   ....+|...-
T Consensus       191 ~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pD  270 (433)
T PRK08117        191 CLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPD  270 (433)
T ss_pred             HHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCC
Confidence            4455666542     46889999999888899887    99999999999999999999972 1111   1123454444


Q ss_pred             EeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCC-C
Q 021783          116 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP-R  194 (307)
Q Consensus       116 ~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~-~  194 (307)
                      +.+++|.++  .|+++|+++++++ +.+.+...........++..+..+.+.++.+..  +.+.++.+.+.++++..- .
T Consensus       271 i~t~sK~lg--~G~pigav~~~~~-i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~L~~  345 (433)
T PRK08117        271 IMTIAKGIA--SGLPLSAVVASKE-LMEQWPLGSHGTTFGGNPVACAAALATLEVIKE--EKLLDNANEMGAYALERLEV  345 (433)
T ss_pred             Eeehhhhcc--CCCcceeEEEcHH-HHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHH
Confidence            578999995  4788999998855 443332211112223455666666666654422  223333333333333210 0


Q ss_pred             ccEEecCCCCCCCchHHHhhhccCCCceEEEEeC------CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCc
Q 021783          195 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIP  268 (307)
Q Consensus       195 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~  268 (307)
                      +.. .++..          ...++.+.++.+.+.      +.+....+.+.+.++|+.+....                 
T Consensus       346 l~~-~~~~~----------~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g-----------------  397 (433)
T PRK08117        346 LKE-KHPVI----------GDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCG-----------------  397 (433)
T ss_pred             HHh-cCCce----------eeeecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecC-----------------
Confidence            000 01100          012455677777773      22345667777877888654311                 


Q ss_pred             HHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          269 VEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       269 ~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                              ...+++|++++.    +++++.++.|.++++++
T Consensus       398 --------~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~  430 (433)
T PRK08117        398 --------NAGNVLRMIPPLTVTKEEIDEGLDILDEALTEY  430 (433)
T ss_pred             --------CCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence                    113569999754    78888888888877643

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.52  E-value=3.6e-13  Score=118.97  Aligned_cols=214  Identities=14%  Similarity=0.176  Sum_probs=125.5

Q ss_pred             ChHHHHhhcC------CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCC---cC--CccCCCc
Q 021783           49 DLDEVASAIG------PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPV---LS--RPLELGA  112 (307)
Q Consensus        49 d~~~l~~~l~------~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~---~~--~~~~~~~  112 (307)
                      +++.+++.+.      +++++|+++..+++.|...+    +++|.++|++||+++|+|+++. .|.   ..  .......
T Consensus       177 ~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~P  256 (412)
T TIGR02407       177 TIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEP  256 (412)
T ss_pred             HHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCC
Confidence            3666777775      35689999999998898642    9999999999999999999986 222   21  1122345


Q ss_pred             cEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhcccc-HHHHHHHHHHHHHHHHHHHhc
Q 021783          113 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-MALRVEKQQDNAQKIAEFLAS  191 (307)
Q Consensus       113 d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~l~~~l~~  191 (307)
                      |++  +++|++ ++.|+++|+++++++ + ..+............+.....+.+.++. +..  .++.++.+.+.+++++
T Consensus       257 Di~--~~~K~l-g~~G~pigav~~~~~-~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~--~~l~~~~~~~g~~l~~  329 (412)
T TIGR02407       257 DIV--CLSKSI-SGYGLPLALTLIKPE-L-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSD--DAFEKAVQRKSEIIQE  329 (412)
T ss_pred             CEE--Eechhc-cCCccceeEEEEchh-h-hccCCCccCCCCCccHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHH
Confidence            655  578999 444788999999865 3 2222111111122233333333444432 211  2233444444443332


Q ss_pred             CCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHH
Q 021783          192 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEV  271 (307)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~  271 (307)
                      +-.  .+ ..   .++.. +  ...++.|.++++.+.+.+....+.+.+..+||.+.....                   
T Consensus       330 ~l~--~l-~~---~~~~~-~--~~vrg~Gl~~~l~l~~~~~~~~~~~~~~~~Gv~v~~~~~-------------------  381 (412)
T TIGR02407       330 RLD--RI-VA---EYPEL-I--KQVRGRGLMQGIECGDGDLAGKIAKAAFENGLIIETSGP-------------------  381 (412)
T ss_pred             HHH--HH-Hh---hCCCc-e--EeeecceeEEEEEecChHHHHHHHHHHHHCCCEEeccCC-------------------
Confidence            210  00 00   01100 0  022456788899997766678888888889987754221                   


Q ss_pred             HHhcCCCCCeEEEEecc----CChHHHHHHHHHHHh
Q 021783          272 RQARGLTEDLVRISVGI----EDVNDLISDLDKALR  303 (307)
Q Consensus       272 ~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~  303 (307)
                            ..+.||++++.    +++++.++.|.++|+
T Consensus       382 ------~~~~lr~~p~l~~t~~~i~~~~~~l~~~l~  411 (412)
T TIGR02407       382 ------NDEVIKLLPPLTIDEETLQQGLDILEQAVE  411 (412)
T ss_pred             ------CCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence                  13459999986    566666666666664

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.51  E-value=6.2e-13  Score=118.47  Aligned_cols=220  Identities=15%  Similarity=0.180  Sum_probs=135.4

Q ss_pred             EEEecCCChHHHHhhcC------CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCcC---Cc
Q 021783           42 VKRVNTCDLDEVASAIG------PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RP  107 (307)
Q Consensus        42 ~~~v~~~d~~~l~~~l~------~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~  107 (307)
                      +..+|.+|.+++++.+.      .++.+|+++..+...|.+.+    ++++.++|++||+++|+||++. .|...   ..
T Consensus       207 ~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~  286 (459)
T PRK11522        207 FRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFAC  286 (459)
T ss_pred             CcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhh
Confidence            34556678888888774      45789999999988899886    9999999999999999999994 22211   22


Q ss_pred             cCCC--ccEEEeccccccccCCC-ceeEEEEEcChhHHHHHHHHHHhcCCCC--ChhhHHHHhhccccHHH--HHHHHHH
Q 021783          108 LELG--ADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELYFLQNAEGSGL--APFDCWICLRGVKTMAL--RVEKQQD  180 (307)
Q Consensus       108 ~~~~--~d~~~~s~~K~~~g~~g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~--~~~~~~~  180 (307)
                      ..+|  .|++  +++|.+++  | +.+|.++++++ +.+.+.......+++.  .+..+..+.+.++.++.  ..++..+
T Consensus       287 e~~gv~PDiv--t~gK~lgg--G~~Pigav~~~~~-i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~  361 (459)
T PRK11522        287 EHENVQPDIL--CLAKALGG--GVMPIGATIATEE-VFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQ  361 (459)
T ss_pred             hccCCCCCEE--EechhhhC--CCccceeEEEcHH-HHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            2234  4655  68999964  3 23677777744 4333321111122222  55666666666665532  1223333


Q ss_pred             HHHHHHHHHhcCCCccEEecC-CCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecc
Q 021783          181 NAQKIAEFLASHPRVKKVNYA-GLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMP  259 (307)
Q Consensus       181 ~~~~l~~~l~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p  259 (307)
                      ..+.+.+.|++...    .++ .+.          ..++.|.++.+.+.+.+....+.+.+.++|+.+.....       
T Consensus       362 ~g~~l~~~L~~l~~----~~~~~i~----------~VrG~Gl~~giel~~~~~~~~i~~~l~~~Gvl~~~~~~-------  420 (459)
T PRK11522        362 KGDYLLDGFRQLAR----EYPDLVQ----------EARGKGMLMAIEFVDNEIGYNFASEMFRQRVLVAGTLN-------  420 (459)
T ss_pred             HHHHHHHHHHHHHH----hCCCcee----------eEEeceeEEEEEecCchHHHHHHHHHHHCCeEEEecCC-------
Confidence            33334443332210    011 001          12556888899886655567788888888987753211       


Q ss_pred             cccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          260 CFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                                        ..+.+|+.+.+    ++++++++.|.++++++
T Consensus       421 ------------------~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~~  452 (459)
T PRK11522        421 ------------------NAKTIRIEPPLTLTIEQCEQVLKAARKALAAM  452 (459)
T ss_pred             ------------------CCCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence                              13459988875    77888888888777643

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=99.50  E-value=7.7e-14  Score=114.62  Aligned_cols=247  Identities=16%  Similarity=0.190  Sum_probs=131.5

Q ss_pred             CeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEE
Q 021783           15 EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLL   94 (307)
Q Consensus        15 d~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~~~~~li   94 (307)
                      -.|+...|-|+.+.. .....+....+...    |...+...-++.+-+=+|++||||.|.+-.     .+++.-+..+|
T Consensus        97 ~~VVa~aPYY~~Y~~-qt~~f~s~~y~w~G----da~~~~~~~~~~~~IElVTSPNNPDG~lr~-----~V~~g~~~k~I  166 (363)
T PF04864_consen   97 ASVVAAAPYYSSYPE-QTDFFDSRLYKWAG----DASNFKNSDNPSPYIELVTSPNNPDGQLRE-----AVLNGSSGKVI  166 (363)
T ss_dssp             EEEEE-SS--CHHHH-HCCCT-BTTEEEEE----ECCCGTT-S-CCGEEEEEESS-TTT-----------SSTTTEEEEE
T ss_pred             ceeEecCCCccchHH-HHHhccccCccccc----cHHhhccCCCCCCeEEEEeCCCCCcccccc-----hhcCCCCccee
Confidence            478888888876652 22223322223322    222221111133445589999999997642     23345566789


Q ss_pred             EeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccc----
Q 021783           95 VDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----  169 (307)
Q Consensus        95 ~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----  169 (307)
                      .|-||--|++. -....+.|++++|+||.- |++|.|.||.+++++.+.+++..+......+.+...+.-+..-|+    
T Consensus       167 ~D~AYYWPhyTpI~~~aD~DiMLFT~SK~T-GHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~  245 (363)
T PF04864_consen  167 HDLAYYWPHYTPITAPADHDIMLFTLSKLT-GHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLD  245 (363)
T ss_dssp             EE-TT-STTTS---S-B--SEEEEEHHHHC-S-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHH
T ss_pred             eeeeeecccccccCCCCCCceEEEEEeccc-CccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHh
Confidence            99999888764 444567899999999988 899999999999999998888777766665555544433222221    


Q ss_pred             ----------cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhc-cCCCceEEEEeCCHHHHHHHHh
Q 021783          170 ----------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA-KGAGSVLSFLTGSLALSKHVVE  238 (307)
Q Consensus       170 ----------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  238 (307)
                                -+.-..+...+...+|.+.+....   .+.++.+.  |+...+-... ...+.+-|+++...+ ...+.+
T Consensus       246 ~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~---rFSLq~~~--~~yC~ff~~~~~psPafAWlkCe~ee-d~DC~~  319 (363)
T PF04864_consen  246 GYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASK---RFSLQKFS--PQYCNFFKRVREPSPAFAWLKCEREE-DEDCYA  319 (363)
T ss_dssp             HCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSS---SEEE---S--CEEETTTTCEEE---SEEEEEESSCG-GSSHHH
T ss_pred             cccCCCCccchHHHHHHHHHHHHHHHHHHHHhcC---ceecCcCC--chhccccccccCCCCCeEEEecCCcc-cccHHH
Confidence                      122223344555566666666554   23334331  2222221111 113456677775433 355556


Q ss_pred             cCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHH
Q 021783          239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDK  300 (307)
Q Consensus       239 ~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~  300 (307)
                      .|+..+|..+.|..                      .|.+..++|||+-.  ++.+.++++|.+
T Consensus       320 ~l~~~~I~tr~G~~----------------------fga~~ryVRlSml~~~d~Fd~l~~rL~~  361 (363)
T PF04864_consen  320 VLREAKIITRSGVL----------------------FGADSRYVRLSMLKRDDDFDQLLERLSK  361 (363)
T ss_dssp             HHHCTTEEEEEGGG----------------------GTS-TTEEEEESSS-HHHHHHHHHHHHC
T ss_pred             HHHhCCcccCCCCc----------------------cCCCCCeEEEeccCCHHHHHHHHHHHHh
Confidence            66678888888876                      45568889999953  677777777754

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.50  E-value=1.8e-13  Score=121.20  Aligned_cols=214  Identities=10%  Similarity=0.075  Sum_probs=127.7

Q ss_pred             hHHHHhhcC-----CCceEEEEeCCCCCccccc-c---HHHHHHHHHHcCCEEEEeCccCC-CCc---CCccCCCccEEE
Q 021783           50 LDEVASAIG-----PWTKLVWVESPTNPRQQIC-D---IRKIAEMAHAHGALLLVDNSIMS-PVL---SRPLELGADIVM  116 (307)
Q Consensus        50 ~~~l~~~l~-----~~~~~v~~~~~~n~tG~~~-~---~~~l~~~~~~~~~~li~D~a~~~-~~~---~~~~~~~~d~~~  116 (307)
                      ++.+++.+.     .++++|+++..++++|... |   +++|.++|++||+++|+||++.. +..   .....++..--+
T Consensus       183 ~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi  262 (421)
T PRK09792        183 LDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDL  262 (421)
T ss_pred             HHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcE
Confidence            467777764     4678999998899999775 5   99999999999999999999862 221   111223322225


Q ss_pred             eccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 021783          117 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVK  196 (307)
Q Consensus       117 ~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~  196 (307)
                      .+++|.++  +|.++|+++++++ +.+.+...........++..+..+.+.++.+..  .++.++.+.+.++++..-.  
T Consensus       263 ~t~gK~l~--~G~pigav~~~~~-i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~--~~~~~~~~~~g~~l~~~l~--  335 (421)
T PRK09792        263 MTMAKSLA--GGMPLSGVVGNAN-IMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDK--ESLCERANQLGQRLKNTLI--  335 (421)
T ss_pred             EEeehhhc--CCCceEEEEEcHH-HHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHH--
Confidence            78999995  4688999998755 443332222222233445555655555544432  1233333344443332100  


Q ss_pred             EEecCCCCCCCchHHHhhhccCCCceEEEEeCCH-------HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcH
Q 021783          197 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV  269 (307)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~  269 (307)
                      .+    .+.+|.+    ..+++.|.++++.+.+.       .....+.+.+..+|+.+....                  
T Consensus       336 ~l----~~~~p~v----~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~g------------------  389 (421)
T PRK09792        336 DA----KESVPAI----AAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCG------------------  389 (421)
T ss_pred             HH----HHhCCCc----ceecccceEEEEEecCCccCCcchHHHHHHHHHHHHCCcEEeecC------------------
Confidence            00    0011110    12356688999988532       346778888888888763211                  


Q ss_pred             HHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHh
Q 021783          270 EVRQARGLTEDLVRISVGI----EDVNDLISDLDKALR  303 (307)
Q Consensus       270 ~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~  303 (307)
                             ...+.+|+.+++    +++++.++.|.++++
T Consensus       390 -------~~~~~irl~P~l~i~~~ei~~~~~~l~~~l~  420 (421)
T PRK09792        390 -------AYGNVIRFLYPLTIPDAQFDAAMKILQDALS  420 (421)
T ss_pred             -------CCCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence                   124569999876    566666667666653

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.49  E-value=7.6e-13  Score=121.32  Aligned_cols=129  Identities=20%  Similarity=0.253  Sum_probs=102.0

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhh-hcccCCcEEEEecCC----------C-----hHHHHhhcCCC------
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSR-VTPKTGVVVKRVNTC----------D-----LDEVASAIGPW------   60 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~----------d-----~~~l~~~l~~~------   60 (307)
                      +.+++++.+++||.||++..+|-|..    + ++...|+.++++...          +     .+.+++++...      
T Consensus       203 n~a~i~a~~~~Gd~VLvdRN~HKSv~----hgaLiLsGa~PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~  278 (720)
T PRK13578        203 NKVVTNALLTPGDLVLFDRNNHKSNH----HGALIQAGATPVYLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERAD  278 (720)
T ss_pred             HHHHHHHhcCCCCEEEeecccHHHHH----HHHHHHcCCeEEEeeccccccCCcCCCChHHccHHHHHHHHHhcCccccc
Confidence            34788889999999999999998887    4 367889999998752          3     45577777532      


Q ss_pred             ----ceEEEEeCCCCCccccccHHHHHHH-HHHcCCEEEEeCccCC-----CC---cC-CccCCCcc----EEEeccccc
Q 021783           61 ----TKLVWVESPTNPRQQICDIRKIAEM-AHAHGALLLVDNSIMS-----PV---LS-RPLELGAD----IVMHSATKF  122 (307)
Q Consensus        61 ----~~~v~~~~~~n~tG~~~~~~~l~~~-~~~~~~~li~D~a~~~-----~~---~~-~~~~~~~d----~~~~s~~K~  122 (307)
                          .+++++++|+. .|.+.|+++|+++ ++.++ +|++|+||+.     +.   ++ ...+.|.|    +++.|.||.
T Consensus       279 ~~~p~k~vvit~pTY-dG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKt  356 (720)
T PRK13578        279 EARPFRLAVIQLGTY-DGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQ  356 (720)
T ss_pred             cccCceEEEEECCCC-cceeecHHHHHHHhhccCC-cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhc
Confidence                58999999987 7999999999999 68888 9999999863     11   11 22456888    999999999


Q ss_pred             cccCCCceeEEEEEcCh
Q 021783          123 IAGHSDVMAGVLAVKGE  139 (307)
Q Consensus       123 ~~g~~g~~~G~~~~~~~  139 (307)
                      +.+.+-  +.++..++.
T Consensus       357 L~alTQ--aS~LHvk~~  371 (720)
T PRK13578        357 QAGFSQ--TSQIHKKDN  371 (720)
T ss_pred             chhhhh--HhhhhcCCc
Confidence            987764  778877654

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.49  E-value=4.5e-12  Score=112.66  Aligned_cols=247  Identities=11%  Similarity=0.074  Sum_probs=142.9

Q ss_pred             CCeEEEcCCCCcchHHHHhhhccc-----------CCcEEEEecCCC-----hHHHHhhcC---CCceEEEEeC-CCCCc
Q 021783           14 GEEIVAGDDLYGGTDRLLSRVTPK-----------TGVVVKRVNTCD-----LDEVASAIG---PWTKLVWVES-PTNPR   73 (307)
Q Consensus        14 gd~Vlv~~~~~~~~~~~~~~~~~~-----------~g~~~~~v~~~d-----~~~l~~~l~---~~~~~v~~~~-~~n~t   73 (307)
                      ..+|+....+|.+...........           .+...+.++.+|     ++++++.+.   +++.+|+++. +++..
T Consensus       134 r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~g  213 (423)
T PRK05964        134 RSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAG  213 (423)
T ss_pred             CcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEecccccCC
Confidence            457888787777654322221111           122333333345     788888874   5678888887 57777


Q ss_pred             ccccc----HHHHHHHHHHcCCEEEEeCccC-CCCcC---CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHH
Q 021783           74 QQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  145 (307)
Q Consensus        74 G~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~  145 (307)
                      |...+    +++|.++|++||+++|+||+|. .|...   ....++...-+.+++|++++ +++.+|+++.+++ +.+.+
T Consensus       214 G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~pDi~~~~K~l~g-G~~p~~av~~~~~-i~~~~  291 (423)
T PRK05964        214 GMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPDIMCLSKGLTG-GYLPLAATLCTAE-IFEAF  291 (423)
T ss_pred             CcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCCCCeeeeehhhhc-CcccceEEEEcHH-HHHhh
Confidence            87764    9999999999999999999985 22211   11223333333467899954 2345888887744 54444


Q ss_pred             HHH---HH-hcCC--CCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhcc
Q 021783          146 YFL---QN-AEGS--GLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  217 (307)
Q Consensus       146 ~~~---~~-~~~~--~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~  217 (307)
                      ...   .. ..++  ...+.....+.+.++.+..  ..++..+..+.+.+.+++...     .+.+.          ..+
T Consensus       292 ~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~-----~~~i~----------~vr  356 (423)
T PRK05964        292 YSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAALSAGLAEGLEPFRD-----LPGVA----------DVR  356 (423)
T ss_pred             hcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcc-----CCCeE----------Eee
Confidence            311   00 1111  2344555555555554422  233344444445544443210     11111          124


Q ss_pred             CCCceEEEEeCCHH---HHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CC
Q 021783          218 GAGSVLSFLTGSLA---LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----ED  290 (307)
Q Consensus       218 ~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~  290 (307)
                      +.|.++.+.+.+.+   ....+.+.+..+||.+....                            +.+|+++.+    +|
T Consensus       357 g~Gl~~~i~l~~~~~~~~~~~l~~~l~~~Gv~v~~~~----------------------------~~lR~~p~l~~t~ed  408 (423)
T PRK05964        357 VLGAIGAVELDRPVLERDGPALRAFALERGVLLRPLG----------------------------NTIYLMPPYIITAEE  408 (423)
T ss_pred             cccEEEEEEeccCcchhHHHHHHHHHHHCCeEEEecC----------------------------CEEEEeCCcccCHHH
Confidence            45777788885432   36678888888898765311                            239999875    67


Q ss_pred             hHHHHHHHHHHHhcC
Q 021783          291 VNDLISDLDKALRTG  305 (307)
Q Consensus       291 ~~~~i~~l~~~l~~~  305 (307)
                      +|++++.|.++++++
T Consensus       409 Id~~v~~l~~al~~~  423 (423)
T PRK05964        409 LDRITDAIVEVADEL  423 (423)
T ss_pred             HHHHHHHHHHHHhhC
Confidence            777777777777653

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.49  E-value=4.6e-13  Score=116.25  Aligned_cols=206  Identities=14%  Similarity=0.186  Sum_probs=136.1

Q ss_pred             CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC----CCCcCCccCCCccEEEeccccccccCCCce
Q 021783           59 PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM----SPVLSRPLELGADIVMHSATKFIAGHSDVM  130 (307)
Q Consensus        59 ~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~----~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~  130 (307)
                      .++.+++++..+...|...+    ++++.++|++||+++|+||+|+    +|.+.....+|+.--+.+++|.+++  |+.
T Consensus       221 ~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~aK~ig~--G~P  298 (447)
T COG0160         221 EEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGG--GLP  298 (447)
T ss_pred             CceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEecccccC--CCc
Confidence            36889999999999999975    9999999999999999999996    5665666667754445559999964  778


Q ss_pred             eEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchH
Q 021783          131 AGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE  210 (307)
Q Consensus       131 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~  210 (307)
                      .|.++.+++ +.. +..........-.+..+..+.+-++.++.  +.+.+++..+.++++.+-.-..-.++.+.      
T Consensus       299 l~avv~r~e-i~~-~~~g~~~~Tf~GNpva~Aaa~AvL~vie~--e~L~~~a~~~G~~l~~~L~~l~~~~~~Ig------  368 (447)
T COG0160         299 LSAVVGRAE-IMD-WPPGGHGGTFGGNPVACAAALAVLDVIEE--ENLLERAAELGEYLRDRLEELQEKHPLIG------  368 (447)
T ss_pred             eeEEeccHH-hcc-cCCcccCCCCCcCHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHHhhcCcee------
Confidence            999999865 433 22222122233445566666666665443  35556666555555433100000111111      


Q ss_pred             HHhhhccCCCceEEEEeC--------CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeE
Q 021783          211 LHYSQAKGAGSVLSFLTG--------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLV  282 (307)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i  282 (307)
                          +.++.|.++.+.+.        +.+...++.+++.++|+.+...+.                         ..+.+
T Consensus       369 ----dVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G~-------------------------~~nvi  419 (447)
T COG0160         369 ----DVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGP-------------------------HGNVL  419 (447)
T ss_pred             ----cccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEeccCC-------------------------CCcEE
Confidence                12667888888762        235678889999989875543221                         23458


Q ss_pred             EEEecc----CChHHHHHHHHHHHhcC
Q 021783          283 RISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       283 Ris~~~----~~~~~~i~~l~~~l~~~  305 (307)
                      ||.+.+    +++|..++.|.++|++.
T Consensus       420 Ri~PPL~is~e~~d~~l~il~~al~~~  446 (447)
T COG0160         420 RILPPLTISDEELDEGLDILEEALKEA  446 (447)
T ss_pred             EEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence            888865    88899999999888754

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.48  E-value=2.3e-12  Score=114.16  Aligned_cols=249  Identities=15%  Similarity=0.120  Sum_probs=145.0

Q ss_pred             CCeEEEcCCCCcchHHHHhhhc------ccC---CcEEEEecCCChHHHHhhcC------CCceEEEEeCCCCCcccccc
Q 021783           14 GEEIVAGDDLYGGTDRLLSRVT------PKT---GVVVKRVNTCDLDEVASAIG------PWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus        14 gd~Vlv~~~~~~~~~~~~~~~~------~~~---g~~~~~v~~~d~~~l~~~l~------~~~~~v~~~~~~n~tG~~~~   78 (307)
                      +.+|+.....|.+.........      +.+   .-.+..+|.+|.+++++.+.      .++.+|+++......|...+
T Consensus       163 r~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p  242 (442)
T TIGR03372       163 KFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILP  242 (442)
T ss_pred             CcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccC
Confidence            4578877776666542211111      111   12245667778888777663      46789999999888898887


Q ss_pred             ----HHHHHHHHHHcCCEEEEeCccC-CCCcC---CccCCC--ccEEEeccccccccCCC-ceeEEEEEcChhHHHHHHH
Q 021783           79 ----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLELG--ADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELYF  147 (307)
Q Consensus        79 ----~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~~~~--~d~~~~s~~K~~~g~~g-~~~G~~~~~~~~~~~~~~~  147 (307)
                          ++++.++|++||+++|+||++. .|...   ....+|  .|+++  ++|.+++  | ..+|.++++++ +.+.+..
T Consensus       243 ~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lg~--G~~Pigavv~~~~-i~~~~~~  317 (442)
T TIGR03372       243 PEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILC--LAKALGG--GVMPIGATIATEA-VFSVLFD  317 (442)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeee--ehhhhcC--CcccceEEEecHH-HHHhhhc
Confidence                9999999999999999999994 33221   222334  56655  8999953  3 23677777744 4444421


Q ss_pred             HHHhcCCC--CChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEE
Q 021783          148 LQNAEGSG--LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  225 (307)
Q Consensus       148 ~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  225 (307)
                      .....+++  -.+..+..+.+.++.++.  +++.++++.+.+++.+.-.  .+    ...+|..   ....++.|.++.+
T Consensus       318 ~~~~~~~T~~gnp~~~Aaa~a~L~~i~~--~~l~~~~~~~G~~l~~~L~--~l----~~~~~~~---i~~vRG~Gl~~gi  386 (442)
T TIGR03372       318 NPFLHTTTFGGNPLACAAALATINELLE--KNLPAQAAIKGDFLLDGFQ--QL----AAEYPDL---IIEARGKGLLMAI  386 (442)
T ss_pred             cCccccCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHH--HH----HHhCCCc---eEEEecceEEEEE
Confidence            11011222  245666666666665532  2334444444444332100  00    0001100   0012567889999


Q ss_pred             EeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 021783          226 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  303 (307)
Q Consensus       226 ~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  303 (307)
                      .+.+.+....+.+.+..+|+.+.....                         ..+.+|+++.+...++.++.+.++++
T Consensus       387 el~~~~~~~~i~~~l~~~Gvl~~~~~~-------------------------~~~~lr~~Ppl~~t~~~id~~~~~l~  439 (442)
T TIGR03372       387 EFRDNEIGYAFAKELFQQNILVAGTLN-------------------------NAKSIRIEPPLTITIEQCALVIKAAK  439 (442)
T ss_pred             EeCChHHHHHHHHHHHHCCcEEeecCC-------------------------CCCEEEEECCcccCHHHHHHHHHHHH
Confidence            996655567888888888987753211                         12459999987555555555555544

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=99.47  E-value=2e-11  Score=103.01  Aligned_cols=134  Identities=30%  Similarity=0.321  Sum_probs=111.4

Q ss_pred             HHHHHHh-cC--CCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCcc-ccccH
Q 021783            4 LAAVTHL-LG--TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQ-QICDI   79 (307)
Q Consensus         4 l~~~~~~-~~--~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG-~~~~~   79 (307)
                      -++.++. +.  +.++++|+...|+.+...++..++..|.+++..+.+|.+++++.....+..+++++|+. .| ...|+
T Consensus       151 EAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~d~~~l~~~~~~~~~gv~vQyP~~-~G~~~~d~  229 (450)
T COG0403         151 EAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDADDLDDLESADDGDVFGVLVQYPNT-FGIVEEDL  229 (450)
T ss_pred             HHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccchhhhhhhccccCeEEEEEecCCC-CCccchhH
Confidence            3555653 32  36899999999999999999999999999999999999999998335889999999986 67 66679


Q ss_pred             HHHHHHHHHcCCEEEEeCc-cCCCCcCCccCCCccEEEecccc-----ccccCCCceeEEEEEcChhH
Q 021783           80 RKIAEMAHAHGALLLVDNS-IMSPVLSRPLELGADIVMHSATK-----FIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a-~~~~~~~~~~~~~~d~~~~s~~K-----~~~g~~g~~~G~~~~~~~~~  141 (307)
                      .+|.+.+|++|.++++=.- -+.+.+..+.++|+|++++|.+.     .||||.   .|++.++++..
T Consensus       230 ~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGGPh---ag~fA~~~~~~  294 (450)
T COG0403         230 RALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGPH---AGYFAVKDEFK  294 (450)
T ss_pred             HHHHHHHhhcCCEEEEEechhHhhccCCccccCCceEEecCcccCCCcCCCCcc---eeeeeEhHhHh
Confidence            9999999999988876433 34567778999999999999998     566665   89999997643

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.47  E-value=2.3e-12  Score=114.13  Aligned_cols=216  Identities=11%  Similarity=0.085  Sum_probs=129.3

Q ss_pred             hHHHHhhcC-----CCceEEEEeCCCCCccccc-c---HHHHHHHHHHcCCEEEEeCccCC-CCcC---CccCCCccEEE
Q 021783           50 LDEVASAIG-----PWTKLVWVESPTNPRQQIC-D---IRKIAEMAHAHGALLLVDNSIMS-PVLS---RPLELGADIVM  116 (307)
Q Consensus        50 ~~~l~~~l~-----~~~~~v~~~~~~n~tG~~~-~---~~~l~~~~~~~~~~li~D~a~~~-~~~~---~~~~~~~d~~~  116 (307)
                      ++++++.+.     .++++|+++..+..+|... |   +++|.++|++||+++|+||+|.. +...   ....++....+
T Consensus       183 ~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi  262 (425)
T PRK07495        183 LAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADL  262 (425)
T ss_pred             HHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCE
Confidence            445566652     4688999997776678554 3   99999999999999999999862 2211   22334566667


Q ss_pred             eccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 021783          117 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVK  196 (307)
Q Consensus       117 ~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~  196 (307)
                      .+++|.++  .|+++|+++++++ +.+.+...........++..+..+.+.++.+..  ..+.++++.+.+++++.-...
T Consensus       263 ~tlsK~l~--~G~pigav~~~~~-i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~--~~l~~~~~~~g~~l~~~L~~l  337 (425)
T PRK07495        263 TTMAKGLA--GGFPLAAVTGRAE-IMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEE--EDLCERANQLGNRLKQRLASL  337 (425)
T ss_pred             Eeehhhhc--CCccceEEEEcHH-HHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHHHHH
Confidence            88999995  4678999999754 443332212222234455566655555554432  233344444444433221000


Q ss_pred             EEecCCCCCCCchHHHhhhccCCCceEEEEeCC-------HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcH
Q 021783          197 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV  269 (307)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~  269 (307)
                      .-.++.+.          ..++.|.++++.+.+       .+....+.+.+..+|+.+.....                 
T Consensus       338 ~~~~~~i~----------~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g~-----------------  390 (425)
T PRK07495        338 RETVPEIA----------DIRGPGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTCGV-----------------  390 (425)
T ss_pred             HhhCCCee----------eeecCceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeecCC-----------------
Confidence            00011111          124567788888732       12355677777788887643111                 


Q ss_pred             HHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          270 EVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       270 ~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                              ..+.+|+.+.+    +++++.++.|.++|+++
T Consensus       391 --------~~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~  422 (425)
T PRK07495        391 --------HGNVIRFLAPITIQDDVFAEALDILEASILEA  422 (425)
T ss_pred             --------CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence                    12458888765    78889999999888754

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.47  E-value=4.5e-13  Score=116.29  Aligned_cols=174  Identities=20%  Similarity=0.270  Sum_probs=120.0

Q ss_pred             eEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcC---CC---ceEEEEeCCCCCccccccHHHHHH
Q 021783           16 EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG---PW---TKLVWVESPTNPRQQICDIRKIAE   84 (307)
Q Consensus        16 ~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~---~~---~~~v~~~~~~n~tG~~~~~~~l~~   84 (307)
                      .|++++..|.+..    .++...|+.++.||.+     |+++|++.+.   .+   +-+|+.+..++.+|.+-|+++|.+
T Consensus       143 ~i~~s~~aH~S~~----Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~  218 (373)
T PF00282_consen  143 VIYVSEQAHYSIE----KAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIAD  218 (373)
T ss_dssp             EEEEETTS-THHH----HHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHH
T ss_pred             ccccccccccHHH----HhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhh
Confidence            5778888998887    7788999999999885     7788888875   12   335667788889999999999999


Q ss_pred             HHHHcCCEEEEeCccCCCCc--CCcc-----CCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH-----HHHH--
Q 021783           85 MAHAHGALLLVDNSIMSPVL--SRPL-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY-----FLQN--  150 (307)
Q Consensus        85 ~~~~~~~~li~D~a~~~~~~--~~~~-----~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~-----~~~~--  150 (307)
                      +|+++++|+++|+||+...+  +...     -..+|.++.++|||++.|.+  +|+++.+++.......     .+..  
T Consensus       219 i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~--~~~~l~r~~~~l~~~~~~~~~Yl~~~~  296 (373)
T PF00282_consen  219 ICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYG--CGVLLVRDKSDLRDAFSINADYLGNDD  296 (373)
T ss_dssp             HHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS---EEEEESSGGGHHGGGEEEETCTT-S-
T ss_pred             hccccceeeeecccccccccccccccccccccccccccccchhhhhcCCcc--ceeEEeecccchHHHhccChhhhcccc
Confidence            99999999999999986332  2111     12589999999999988887  9999999875432111     0000  


Q ss_pred             --------h-----cCCC-CChhhHHHHh--hccccHHHHHHHHHHHHHHHHHHHhcCCCc
Q 021783          151 --------A-----EGSG-LAPFDCWICL--RGVKTMALRVEKQQDNAQKIAEFLASHPRV  195 (307)
Q Consensus       151 --------~-----~~~~-~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~  195 (307)
                              .     .++. ......|+.+  .|.+.+..+.++..+.++++.+.+++.+.+
T Consensus       297 ~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~  357 (373)
T PF00282_consen  297 RESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRF  357 (373)
T ss_dssp             SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTE
T ss_pred             cccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence                    0     0011 1123344433  356778888899999999999999988753

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.47  E-value=1.2e-12  Score=116.52  Aligned_cols=208  Identities=15%  Similarity=0.162  Sum_probs=124.6

Q ss_pred             HHHHhhcC-----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccCC-CCcC---CccCC--CccEE
Q 021783           51 DEVASAIG-----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS---RPLEL--GADIV  115 (307)
Q Consensus        51 ~~l~~~l~-----~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~~-~~~~---~~~~~--~~d~~  115 (307)
                      +.+++.+.     +++++|+++..+|++|.+.+    +++|.++|++||+++|+||+|.. +...   ....+  ..|++
T Consensus       190 ~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDii  269 (443)
T PRK08360        190 EYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDII  269 (443)
T ss_pred             HHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEE
Confidence            34555552     57899999988899998875    89999999999999999999862 2211   11122  34554


Q ss_pred             EeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCC
Q 021783          116 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHP  193 (307)
Q Consensus       116 ~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~  193 (307)
                        +++|.++  +|+++|+++++++ +.+.+...........++..+..+...++.+..  ..++..+....+.+.|++..
T Consensus       270 --tlsK~l~--~G~pigav~~~~~-i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~  344 (443)
T PRK08360        270 --TLGKPLG--GGLPISATIGRAE-IMDSLPPLAHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMK  344 (443)
T ss_pred             --Eeccccc--CCceeEEEEEcHH-HHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence              6799995  5788999999854 444443221222233445556666666655432  12222333333333333210


Q ss_pred             CccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC--------HHHHHHHHhcCCcceeecCCCCccceeecccccCCC
Q 021783          194 RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHA  265 (307)
Q Consensus       194 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~  265 (307)
                      .    .++.+.          ..++.|.++.+.+.+        ...+..+...+..+|+.+....              
T Consensus       345 ~----~~~~v~----------~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--------------  396 (443)
T PRK08360        345 K----KHELIG----------DVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFFS--------------  396 (443)
T ss_pred             H----hCCCee----------eeeccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeecC--------------
Confidence            0    001111          124567788877631        1235677778888888764311              


Q ss_pred             CCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          266 SIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       266 ~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                                   .+.+|+++++    +++++.++.|.+++++
T Consensus       397 -------------~~~lr~~P~l~~t~~~id~~~~~l~~~l~~  426 (443)
T PRK08360        397 -------------GNVLRIQPPLTIEKEVLDEGLDILEEAIED  426 (443)
T ss_pred             -------------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                         2348998865    6777777777777754

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.47  E-value=4.6e-13  Score=118.61  Aligned_cols=210  Identities=10%  Similarity=0.102  Sum_probs=127.6

Q ss_pred             hHHHHhhcC-----CCceEEEEeCCCCCcccc-cc---HHHHHHHHHHcCCEEEEeCccCC-CCcC---CccCCC--ccE
Q 021783           50 LDEVASAIG-----PWTKLVWVESPTNPRQQI-CD---IRKIAEMAHAHGALLLVDNSIMS-PVLS---RPLELG--ADI  114 (307)
Q Consensus        50 ~~~l~~~l~-----~~~~~v~~~~~~n~tG~~-~~---~~~l~~~~~~~~~~li~D~a~~~-~~~~---~~~~~~--~d~  114 (307)
                      ++.+++.+.     +++.+|+++..+++.|.. .+   +++|.++|++||+++|.||+|.. +...   ....++  .|+
T Consensus       183 ~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDi  262 (421)
T PRK06777        183 LSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDL  262 (421)
T ss_pred             HHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCE
Confidence            556777663     467899999888888865 34   99999999999999999999862 2111   122233  464


Q ss_pred             EEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcC
Q 021783          115 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       115 ~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~  192 (307)
                      +  +++|.++  +|.++|+++++++ +.+.+............+..+..+.+.++.+..  ..++..+..+.+.+.|++.
T Consensus       263 v--~~sK~l~--~G~pigav~~~~~-i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l  337 (421)
T PRK06777        263 I--TMAKSLG--GGMPISAVVGRAE-VMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLVEVLEKA  337 (421)
T ss_pred             E--eeehhhc--CCCceEEEEEcHH-HHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            4  6999994  5788999999854 444333222222333455666666666654422  2233333334444444432


Q ss_pred             CCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC-------HHHHHHHHhcCCcceeecCCCCccceeecccccCCC
Q 021783          193 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHA  265 (307)
Q Consensus       193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~  265 (307)
                      .   . .++.+.          ..++.|.++.+.+..       .+....+.+.+.++|+.+.++..+            
T Consensus       338 ~---~-~~~~i~----------~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~------------  391 (421)
T PRK06777        338 K---A-SCPAIV----------DIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVH------------  391 (421)
T ss_pred             H---H-hCCCeE----------EecCceEEEEEEEecCccCCccHHHHHHHHHHHHhCCeEEeecCCC------------
Confidence            0   0 001111          114467777766632       234566777677788987665431            


Q ss_pred             CCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHh
Q 021783          266 SIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALR  303 (307)
Q Consensus       266 ~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~  303 (307)
                                   .+++|+++.+    +++++.++.|.+++.
T Consensus       392 -------------g~~lr~~ppl~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        392 -------------GNVIRFLYPLTIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             -------------CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence                         2359999964    677777787777764

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.45  E-value=8.5e-12  Score=117.40  Aligned_cols=120  Identities=26%  Similarity=0.379  Sum_probs=99.4

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCE
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGAL   92 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~~~~~   92 (307)
                      ++++|++++..|+.+...+...++..|.+++.++   +++|++.+  ++.++++++|++ .|.+.|+++|.+++|++|.+
T Consensus       152 ~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~---~~~l~~~~--~~~~v~~q~Pn~-~G~ied~~~i~~~~h~~gal  225 (939)
T TIGR00461       152 KANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD---CSDIKKAV--DVFGCLLQYPAT-DGSILDYKQLIDALHSHKSL  225 (939)
T ss_pred             CCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc---HHHHhhcC--CEEEEEEECCCC-CeEEecHHHHHHHHHHcCCE
Confidence            4589999999999999888888899999999885   45666665  578888989876 79999999999999999999


Q ss_pred             EEEeCccCC-CCcCCccCCCccEEEeccccc-----cccCCCceeEEEEEcChhH
Q 021783           93 LLVDNSIMS-PVLSRPLELGADIVMHSATKF-----IAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        93 li~D~a~~~-~~~~~~~~~~~d~~~~s~~K~-----~~g~~g~~~G~~~~~~~~~  141 (307)
                      ++++.-... +.+..+.++|+|+++++.+++     +|||.   .|++.++++..
T Consensus       226 ~~~~ad~~al~ll~~Pge~GaDi~vg~~q~fg~p~g~GGP~---aG~~a~~~~l~  277 (939)
T TIGR00461       226 VSVAADLMALTLLTPPGHYGADIVLGSSQRFGVPMGYGGPH---AAFFAVKDEYN  277 (939)
T ss_pred             EEEEechHHhCCcCCHHHcCCcEEeeCCCccCCCCCCCCCc---eeeeeecHhhH
Confidence            999766544 445689999999999988885     34554   89999987643

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.45  E-value=4.4e-12  Score=112.70  Aligned_cols=249  Identities=17%  Similarity=0.143  Sum_probs=146.5

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhc---------cc-CCc------EEEEecCCChHHHHhhcC---CCceEEEEeCCCCCc
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVT---------PK-TGV------VVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPR   73 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~---------~~-~g~------~~~~v~~~d~~~l~~~l~---~~~~~v~~~~~~n~t   73 (307)
                      .+++|+..++.|.+.........         .. -+.      ....++.+|++++++.+.   .++++|+++...+.+
T Consensus       131 g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~  210 (426)
T PRK00062        131 GRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNM  210 (426)
T ss_pred             CCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCC
Confidence            36789998998888642211110         00 011      134455678999988874   478899999888889


Q ss_pred             ccccc----HHHHHHHHHHcCCEEEEeCccCCCCc---CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH
Q 021783           74 QQICD----IRKIAEMAHAHGALLLVDNSIMSPVL---SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  146 (307)
Q Consensus        74 G~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~---~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~  146 (307)
                      |.+.+    +++|.++|++||+++|+||+|.....   .....++..--+.+++|.++  .|.++|+++++++ +.+.+.
T Consensus       211 G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~~~~~~~~~~~pDi~~~gK~l~--~G~p~ga~~~~~~-i~~~~~  287 (426)
T PRK00062        211 GVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGGAQGYYGVTPDLTTLGKIIG--GGLPVGAFGGRRE-IMEQLA  287 (426)
T ss_pred             CCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCCccHHHHhCCCcchHhhhhHhh--CCCcceeeeEHHH-HHHhhc
Confidence            99987    99999999999999999999962211   11112233222467899995  4566888888744 544442


Q ss_pred             HH---HHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCc
Q 021783          147 FL---QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS  221 (307)
Q Consensus       147 ~~---~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (307)
                      ..   .........+..+..+.+.++.+..  ..++..+..+.+.+.|++..          ..++..    -..++.|.
T Consensus       288 ~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~----~~vrg~G~  353 (426)
T PRK00062        288 PLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAA----------KKAGIP----LTVNRVGS  353 (426)
T ss_pred             cCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH----------HHcCCc----eEEEEecc
Confidence            11   1112223445556666666654432  23333444444444444210          000000    00134577


Q ss_pred             eEEEEeCC-------------HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEE--e
Q 021783          222 VLSFLTGS-------------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS--V  286 (307)
Q Consensus       222 ~~~~~~~~-------------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis--~  286 (307)
                      ++.+.+.+             ...+..+.+.+..+|+.+.....                           +.+|++  +
T Consensus       354 ~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~~---------------------------~~~~~~~~~  406 (426)
T PRK00062        354 MFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQF---------------------------EAGFVSAAH  406 (426)
T ss_pred             eEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCCc---------------------------CceeeeccC
Confidence            77777632             12356788888888997755321                           013333  3


Q ss_pred             ccCChHHHHHHHHHHHhcC
Q 021783          287 GIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       287 ~~~~~~~~i~~l~~~l~~~  305 (307)
                      +.++++++++.|.+.++++
T Consensus       407 t~~ei~~~~~~l~~~l~~~  425 (426)
T PRK00062        407 TDEDIEKTLEAARKAFAAL  425 (426)
T ss_pred             CHHHHHHHHHHHHHHHHhh
Confidence            4488899999998888754

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.45  E-value=6.4e-12  Score=111.57  Aligned_cols=213  Identities=14%  Similarity=0.131  Sum_probs=126.0

Q ss_pred             ChHHHHhhcC------CCceEEEEeCCCCCccccc----cHHHHHHHHHHcCCEEEEeCccC-C---CCcCCcc--CCCc
Q 021783           49 DLDEVASAIG------PWTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM-S---PVLSRPL--ELGA  112 (307)
Q Consensus        49 d~~~l~~~l~------~~~~~v~~~~~~n~tG~~~----~~~~l~~~~~~~~~~li~D~a~~-~---~~~~~~~--~~~~  112 (307)
                      |++++++.+.      +++.+|+++......|...    .+++|.++|++||+++|+||+|+ .   |......  ....
T Consensus       181 ~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~P  260 (425)
T PRK09264        181 TLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITP  260 (425)
T ss_pred             HHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCC
Confidence            6677888774      2578999998888888755    39999999999999999999995 2   2221111  2235


Q ss_pred             cEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHH---HHHHHHHHHHHHHHHHH
Q 021783          113 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA---LRVEKQQDNAQKIAEFL  189 (307)
Q Consensus       113 d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~l~~~l  189 (307)
                      |++  +++|.+ ++.|+++|+++++++ +. .+............+.....+.+.++.+.   ...+...+..+.+.+.+
T Consensus       261 Di~--t~~K~l-~~~G~pigav~~~~~-i~-~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~~l  335 (425)
T PRK09264        261 DIV--TLSKSI-SGYGLPMALVLIKPE-LD-VWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERL  335 (425)
T ss_pred             CEE--Eecccc-CCCccceEEEEEchh-hh-ccCCCccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            654  678999 455778899999855 32 22111111111222333333334442211   11222233333344433


Q ss_pred             hcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcH
Q 021783          190 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV  269 (307)
Q Consensus       190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~  269 (307)
                      ++...          ..|.+ .  ...++.+.++++.+.+.+....+.+.+...|+.+.....                 
T Consensus       336 ~~l~~----------~~~~~-~--~~vrg~Gl~~~i~l~~~~~~~~l~~~~~~~Gv~~~~~~~-----------------  385 (425)
T PRK09264        336 EEIAA----------KYPGL-G--AEVRGRGMMQGIDFGDGELAGKIAAEAFENGLIIETSGP-----------------  385 (425)
T ss_pred             HHHHH----------hCCCc-e--ecceecccEEEEEecChHHHHHHHHHHHHCCCEEeccCC-----------------
Confidence            32110          01110 0  112446778889887766677888888888987754321                 


Q ss_pred             HHHHhcCCCCCeEEEEec----cCChHHHHHHHHHHHhc
Q 021783          270 EVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  304 (307)
Q Consensus       270 ~~~~~~~~~~~~iRis~~----~~~~~~~i~~l~~~l~~  304 (307)
                              ..+.||+++.    .+++++.++.|.+++++
T Consensus       386 --------~~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~  416 (425)
T PRK09264        386 --------EDEVVKLLPPLTIDEEELEEGLDILEEAVAE  416 (425)
T ss_pred             --------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                    1245999977    37788888888877754

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.43  E-value=1.4e-11  Score=106.67  Aligned_cols=236  Identities=19%  Similarity=0.209  Sum_probs=135.9

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCE
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGAL   92 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~~~~~   92 (307)
                      .+++|+++...|+.+...++..+...|++++.++.++-....   ++++.+|++++|++ .|.+.++++|.+++|++|.+
T Consensus       153 ~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d---~~~~a~v~vq~Pn~-~G~~ed~~~i~~~~h~~gal  228 (429)
T PF02347_consen  153 KRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD---DDDTAAVMVQNPNT-FGVFEDIKEIADIAHAAGAL  228 (429)
T ss_dssp             ---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB----STTEEEEEEESS-T-TSB--THHHHHHHHHHTT-E
T ss_pred             CCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCCcc---ccCeEEEEeecCCC-CceEeeHHHHHHHHHHcCCE
Confidence            357999999999999988888999999999999975321111   67899999999987 79999999999999999999


Q ss_pred             EEEeCcc--CCCCcCCccCCCccEEEecccccc------ccCCCceeEEEEEcChhHHHHHH------------------
Q 021783           93 LLVDNSI--MSPVLSRPLELGADIVMHSATKFI------AGHSDVMAGVLAVKGERLAKELY------------------  146 (307)
Q Consensus        93 li~D~a~--~~~~~~~~~~~~~d~~~~s~~K~~------~g~~g~~~G~~~~~~~~~~~~~~------------------  146 (307)
                      +++ .+.  +.+.+..+.++|+|+++++ +|.|      ||| +  .|++.++++......-                  
T Consensus       229 ~~~-~ad~~aL~~l~~Pge~GADI~vg~-~Q~fg~p~~~GGP-~--~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~lt  303 (429)
T PF02347_consen  229 VIV-GADPNALGGLKSPGEYGADIVVGE-HQTFGIPMGFGGP-G--AGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLT  303 (429)
T ss_dssp             EEE-CGGCCGCCTC--GGGGT-SEEEEC-CTTTT---CCC-S-----EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE
T ss_pred             EEE-ecCHHHHhCcCChhhcCccEEeeC-CCCCcccCCCCCC-C--eeeEEEhhhhhhhCCCceecccccccccceeeec
Confidence            988 664  4566678999999999888 6644      444 3  8999999774433211                  


Q ss_pred             ------HHHHhcC----CCCCh-----hhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHH
Q 021783          147 ------FLQNAEG----SGLAP-----FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL  211 (307)
Q Consensus       147 ------~~~~~~~----~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~  211 (307)
                            ...+.-.    ++...     ...++...|-+.++..-+....++..+.+.|+...   ...+..   .+    
T Consensus       304 LqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~---~~~~~~---~~----  373 (429)
T PF02347_consen  304 LQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIY---GLPFDN---PF----  373 (429)
T ss_dssp             -GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTT---BECSSS---SS----
T ss_pred             cccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhc---CcccCC---CC----
Confidence                  1111110    11111     12344445556666666777888888998888652   111111   10    


Q ss_pred             HhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCCh
Q 021783          212 HYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDV  291 (307)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~  291 (307)
                             ..-.+....++ ....++.+.....|+....-                           .++.+-+++.-...
T Consensus       374 -------f~e~v~~~~~~-~~~~~l~~~~~~~gl~~~~~---------------------------~~~~~li~~TE~~t  418 (429)
T PF02347_consen  374 -------FFEFVVVFSKD-KEVEELLKRGIEGGLNLRYP---------------------------DDGALLICVTETRT  418 (429)
T ss_dssp             -------BSSEEEEESS--HHHHHHHHTT----EEEGGG----------------------------SSEEEEE--TT--
T ss_pred             -------ceeeeeecCCc-HHHHHHHHHHHhcCCCcccc---------------------------CCCeEEEEccCCCC
Confidence                   11222333343 44666888777777433210                           13357888876666


Q ss_pred             HHHHHHHHHHH
Q 021783          292 NDLISDLDKAL  302 (307)
Q Consensus       292 ~~~i~~l~~~l  302 (307)
                      .+.++.|.+++
T Consensus       419 ~edid~lv~~f  429 (429)
T PF02347_consen  419 KEDIDRLVEAF  429 (429)
T ss_dssp             HHHHHHHHH--
T ss_pred             HHHHHHHHhcC
Confidence            77777766543

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=99.43  E-value=4.5e-13  Score=112.20  Aligned_cols=141  Identities=26%  Similarity=0.332  Sum_probs=42.7

Q ss_pred             cHHHHHHHhcCCCCeEEEcCCCCcchHHH--HhhhcccCCcEEEEecCC---ChHHHHhhcCCCceEEEEeCCCCCc--c
Q 021783            2 AALAAVTHLLGTGEEIVAGDDLYGGTDRL--LSRVTPKTGVVVKRVNTC---DLDEVASAIGPWTKLVWVESPTNPR--Q   74 (307)
Q Consensus         2 aal~~~~~~~~~gd~Vlv~~~~~~~~~~~--~~~~~~~~g~~~~~v~~~---d~~~l~~~l~~~~~~v~~~~~~n~t--G   74 (307)
                      ||+.+++.-+.+|.+|+++...-..+-..  +....+..|+++++|-..   .+++++++|+++|.+++-.|++|..  |
T Consensus        73 AAv~L~l~~la~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGttN~t~~~Dye~AI~e~Ta~ll~Vh~Sn~~i~G  152 (367)
T PF03841_consen   73 AAVLLALNTLAKGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTTNRTHLSDYEKAITENTAALLKVHTSNFRIQG  152 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34444444456799999988754433222  346788899999998764   5889999999999999888877753  3


Q ss_pred             cc--ccHHHHHHHHHHcCCEEEEeCccC---------C---CCcCCccCCCccEEEeccccccccCCCceeEEEEEcChh
Q 021783           75 QI--CDIRKIAEMAHAHGALLLVDNSIM---------S---PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  140 (307)
Q Consensus        75 ~~--~~~~~l~~~~~~~~~~li~D~a~~---------~---~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~  140 (307)
                      ..  .+++++.+++++|++++++|...+         .   +........|+|++++|..|.++||.   .|+++++++.
T Consensus       153 Ft~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQ---aGiI~Gkk~l  229 (367)
T PF03841_consen  153 FTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQ---AGIIVGKKEL  229 (367)
T ss_dssp             --------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S----EEEEEEHHH
T ss_pred             ccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCC---eEEEEeCHHH
Confidence            33  479999999999999999999863         1   22224456799999999999999887   8999999775


Q ss_pred             HHHHHH
Q 021783          141 LAKELY  146 (307)
Q Consensus       141 ~~~~~~  146 (307)
                      +. .++
T Consensus       230 I~-~lk  234 (367)
T PF03841_consen  230 IE-KLK  234 (367)
T ss_dssp             HH-HHH
T ss_pred             HH-HHh
Confidence            54 444

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.42  E-value=1.2e-12  Score=116.97  Aligned_cols=205  Identities=13%  Similarity=0.181  Sum_probs=120.4

Q ss_pred             CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccCC-CCc---CCccCCCccEEEeccccccccCCCce
Q 021783           59 PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVL---SRPLELGADIVMHSATKFIAGHSDVM  130 (307)
Q Consensus        59 ~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~~-~~~---~~~~~~~~d~~~~s~~K~~~g~~g~~  130 (307)
                      +++.+|+++..+...|.+.+    +++|.++|++||+++|+||+|.. +..   .....++...-+.|++|.++  +|++
T Consensus       218 ~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~t~sK~l~--~G~p  295 (451)
T PRK06918        218 ETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITVSKSLG--AGVP  295 (451)
T ss_pred             CceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEEeeehhhc--CCCc
Confidence            46888888877776677553    89999999999999999999862 221   12223342222558999994  5799


Q ss_pred             eEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCC-CccEEecCCCCCCCch
Q 021783          131 AGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP-RVKKVNYAGLPEHPGH  209 (307)
Q Consensus       131 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~l~~~~~~  209 (307)
                      +|+++++++ +.+.+...........++..+..+...++.+..  ..+.++.+.+.+.+.+.- .+.. .++.+.     
T Consensus       296 ig~v~~~~~-i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~--~~~~~~~~~~g~~l~~~l~~l~~-~~~~~~-----  366 (451)
T PRK06918        296 ISGVIGRKE-IMDESAPGELGGTYAGSPLGCAAALAVLDIIEK--ENLNDRAIELGKVVMNRFEEMKN-KYNCIG-----  366 (451)
T ss_pred             cEEEEEcHH-HHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHh-hCCCce-----
Confidence            999999855 443332222222234445556665555543321  222333333333332210 0000 001100     


Q ss_pred             HHHhhhccCCCceEEEEeC--------CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCe
Q 021783          210 ELHYSQAKGAGSVLSFLTG--------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL  281 (307)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  281 (307)
                           ..++.|.++.+.+.        +.+....+.+.+..+|+.+.++..+                         .++
T Consensus       367 -----~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~~~-------------------------~~~  416 (451)
T PRK06918        367 -----DVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTY-------------------------GNV  416 (451)
T ss_pred             -----eeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEeecCCC-------------------------CCE
Confidence                 11345777776652        2344677888888899987664321                         245


Q ss_pred             EEEEecc----CChHHHHHHHHHHHhc
Q 021783          282 VRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       282 iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                      +|++++.    +++++.++.|.+++++
T Consensus       417 lrl~p~l~~t~~~id~~l~~l~~~l~~  443 (451)
T PRK06918        417 IRVLMPLVITDEQLEEGLTIIEESLQA  443 (451)
T ss_pred             EEEECCCccCHHHHHHHHHHHHHHHHH
Confidence            9999864    6777788888777754

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.42  E-value=2.6e-11  Score=103.79  Aligned_cols=245  Identities=12%  Similarity=0.007  Sum_probs=152.4

Q ss_pred             HHHHHhcCCCCeEE-EcCCCCcchHHHHhhhcccCCcEEEEecC---------CChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            5 AAVTHLLGTGEEIV-AGDDLYGGTDRLLSRVTPKTGVVVKRVNT---------CDLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         5 ~~~~~~~~~gd~Vl-v~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      ++.+.++++||+++ +...++.+...  ...++.+| ++..+..         .+++++  .++++.+.|.+|+..+.+|
T Consensus        83 a~~~Nll~~g~~~~~~~~tG~fg~r~--~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~~d~~~v~~t~NETstG  157 (364)
T PRK12462         83 MIPMNFSRPGAAAPEYVTTGYWSRKA--IGEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWDARAPFRHYVSNETVEG  157 (364)
T ss_pred             HHHHHcCCCCCcEEEEEeCCHHHHHH--HHHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccCCCCcEEEEccCCCCce
Confidence            45667889999765 33443334442  35566666 3433321         133443  2335678899999999999


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH---H--
Q 021783           75 QICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF---L--  148 (307)
Q Consensus        75 ~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~---~--  148 (307)
                      +..+     ++.+.++.++|+|.+.+.+..+ +..++  |++.++.+|.++ |+|  .++++.+++.+.+....   +  
T Consensus       158 v~~~-----~~~~~~~~llvvD~sS~~~s~pid~~~~--dvi~agsQKnlg-P~G--ltvvivs~~al~~~~~~~p~~ld  227 (364)
T PRK12462        158 LQFP-----DAAGLPDSPLIADMSSDFMSRPFDVEAY--GMVYAHAQKNLG-PAG--VTVAIIRRALLERVPDTLPPMLD  227 (364)
T ss_pred             EecC-----cccccCCCeEEEEcCchhhCCCCChHHc--cEEEeeccccCC-CCc--eEEEEECHHHHhhccccCCchhh
Confidence            9996     3333468999999999887776 66666  999999999995 899  89999998766442111   1  


Q ss_pred             -----HHhcC-CCCChhhHHHHhhcc-----c--cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhh
Q 021783          149 -----QNAEG-SGLAPFDCWICLRGV-----K--TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ  215 (307)
Q Consensus       149 -----~~~~~-~~~~~~~~~~~~~~l-----~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  215 (307)
                           ..... .+++....+.....+     +  .++.+.++..+.++.+++.++..+..   +....+         +.
T Consensus       228 y~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~---~~~~~~---------~~  295 (364)
T PRK12462        228 FRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEV---IDCHAH---------RA  295 (364)
T ss_pred             HHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCc---ccCCCC---------hh
Confidence                 11111 233333333333332     1  34555677778888888888876522   111110         01


Q ss_pred             ccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec----cCCh
Q 021783          216 AKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDV  291 (307)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~  291 (307)
                      .| .-..+.|++.+.+...+|+++++.+|+..--|+-                         .-+.+|+|.=    .+++
T Consensus       296 ~R-S~mnv~f~~~~~~l~~~f~~~a~~~gl~~lkGhr-------------------------~vgg~Ras~yna~~~e~v  349 (364)
T PRK12462        296 AR-STMNVAFRFRQPRLDTLFKEQSTEAGFCGLSGHR-------------------------SIGGIRASLYNAVSEQAV  349 (364)
T ss_pred             hc-CcceEEEEcCCHHHHHHHHHHHHHCCCccccCCc-------------------------ccCceEEEcCCCCCHHHH
Confidence            11 1245677887777789999999999886554442                         1233999983    3566


Q ss_pred             HHHHHHHHHHH
Q 021783          292 NDLISDLDKAL  302 (307)
Q Consensus       292 ~~~i~~l~~~l  302 (307)
                      +.+++.++++-
T Consensus       350 ~~L~~fm~~f~  360 (364)
T PRK12462        350 SRLCAFLKDFA  360 (364)
T ss_pred             HHHHHHHHHHH
Confidence            66666655543

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.41  E-value=4.2e-11  Score=99.47  Aligned_cols=145  Identities=23%  Similarity=0.361  Sum_probs=94.0

Q ss_pred             HH-HHHHHhcCCCCeEE-EcCCCCcchHHHHh------hhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEe-C
Q 021783            3 AL-AAVTHLLGTGEEIV-AGDDLYGGTDRLLS------RVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVE-S   68 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vl-v~~~~~~~~~~~~~------~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~-~   68 (307)
                      || .++..+++|||+.+ ++...|......+.      .-++.+|++...+|+.     |.+.++++++++||+|+++ +
T Consensus        84 Ai~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~~~tk~v~IQRS  163 (403)
T PF06838_consen   84 AIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYREVPLTEDGTIDWEAIKKALKPNTKMVLIQRS  163 (403)
T ss_dssp             HHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE--B-TTSSB-HHHHHHHHHTTEEEEEEE-S
T ss_pred             HHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEEEeecCCCCcCHHHHHHhhccCceEEEEecC
Confidence            45 46677899999998 56666766664442      2235678999999973     8999999999999999998 3


Q ss_pred             CCC---CccccccHHHHHHHHHHc--CCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHH
Q 021783           69 PTN---PRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  142 (307)
Q Consensus        69 ~~n---~tG~~~~~~~l~~~~~~~--~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~  142 (307)
                      -..   |+=.+.+++++.+++|+.  ++++++|++|+...-. .+.+.|+|++.+|+-|..+|.-.--+|+++++++.+.
T Consensus       164 rGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe  243 (403)
T PF06838_consen  164 RGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVE  243 (403)
T ss_dssp             -TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccCccccchhheeccceeCCCCCccCcCCEEechHHHHH
Confidence            322   222223467777777776  7999999999988755 8888999999999999886532223899999977665


Q ss_pred             HHHHH
Q 021783          143 KELYF  147 (307)
Q Consensus       143 ~~~~~  147 (307)
                      .....
T Consensus       244 ~~a~R  248 (403)
T PF06838_consen  244 RAAYR  248 (403)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            54443

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.40  E-value=2.5e-11  Score=105.00  Aligned_cols=234  Identities=14%  Similarity=0.148  Sum_probs=146.1

Q ss_pred             CCeEEEcCCCCcchHHHHhhhc----ccCC-----cEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccc-c---HH
Q 021783           14 GEEIVAGDDLYGGTDRLLSRVT----PKTG-----VVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC-D---IR   80 (307)
Q Consensus        14 gd~Vlv~~~~~~~~~~~~~~~~----~~~g-----~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~-~---~~   80 (307)
                      .++|+....+|.+.....-...    ...+     ..+..++.+|++++++.+.+++++|++++.+...|... |   ++
T Consensus       107 r~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~~~aAvivEpi~g~gG~~~~~~~yl~  186 (364)
T PRK04013        107 RKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFNDVEAAKEAITKETAAVIFEPIQGEGGIVPAKEEFVK  186 (364)
T ss_pred             CCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCCCHHHHHHHhcCCcEEEEEcCCcCCCCCcCCCHHHHH
Confidence            3889988887777642211110    0011     23455667789999999988999999998888777665 4   99


Q ss_pred             HHHHHHHHcCCEEEEeCccC---CCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCC
Q 021783           81 KIAEMAHAHGALLLVDNSIM---SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  157 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~---~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  157 (307)
                      ++.++|++||+++|.||++.   .|.+.....++..--+.+++|.+++  |+.+|.++.+++. ..    ..........
T Consensus       187 ~lr~lc~~~gillI~DEv~tG~RtG~~~a~~~~gv~PDiv~~gK~lgg--G~P~~a~~~~~~~-~~----~~~~~T~~gn  259 (364)
T PRK04013        187 TLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYKVEPDIVTMGKGIGN--GVPVSLTLTNFDV-ER----GKHGSTFGGN  259 (364)
T ss_pred             HHHHHHHHcCCEEEEechhhcCCCCchhHHHhcCCCCCEEEecccccC--CceeEEEEecccc-cC----CCcCCCCCcC
Confidence            99999999999999999986   2332222233433334447999964  5667888877552 11    1112223344


Q ss_pred             hhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHH
Q 021783          158 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVV  237 (307)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (307)
                      +..+..+.+.++.++.  +++.++++++   +++..      .+.+          ...++.|.++.+.+...  ...+.
T Consensus       260 p~~~aaa~a~l~~i~~--~~l~~~~~~~---l~~l~------~~~v----------~~vRG~Gl~~gve~~~~--~~~i~  316 (364)
T PRK04013        260 PLACKAVAVTLRILRR--ERLVEKAGEK---FIEIK------GERV----------VTTRGRGLMIGIVLKKP--VGKYV  316 (364)
T ss_pred             HHHHHHHHHHHHHHHh--ccHHHHHHHH---HHHhc------cCcc----------eeeeeCcEEEEEEeCCc--HHHHH
Confidence            5666666666665533  2334444433   22111      0111          12366788999988542  45677


Q ss_pred             hcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       238 ~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                      +.+..+|+.+....                           .+.+|+.+.+    +++++.++.|.+++++
T Consensus       317 ~~~~~~Gll~~~~g---------------------------~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~  360 (364)
T PRK04013        317 EELQNRGYLVHTAG---------------------------QRVIRLLPPLIISKDTMEEAKSAIEGVIND  360 (364)
T ss_pred             HHHHhCCcEEeeCC---------------------------CCEEEEeCCcccCHHHHHHHHHHHHHHHHH
Confidence            77777888664311                           2348888864    7888888888888865

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.37  E-value=1.4e-10  Score=106.64  Aligned_cols=136  Identities=13%  Similarity=0.141  Sum_probs=101.4

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----------Ch-----HHHHhhcC--C---Cce
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----------DL-----DEVASAIG--P---WTK   62 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----------d~-----~~l~~~l~--~---~~~   62 (307)
                      +.+++++.+++||.||++..+|-|..    ..+...|+++++++..          ++     +.+++.+.  +   +++
T Consensus       224 n~av~~a~~~~Gd~VLvdRN~HKSv~----~aLilsga~PVYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~  299 (713)
T PRK15399        224 NKIVGMYAAPAGSTLLIDRNCHKSLA----HLLMMSDVVPIWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQAQWPV  299 (713)
T ss_pred             HHHHHHHhcCCCCEEEeecccHHHHH----HHHHHcCCeeEEecccccccCCcCCCChhhccHHHHHHHHHhCCCcCCce
Confidence            34788889999999999999999988    5678899999998752          33     88888886  2   336


Q ss_pred             EEEEeCCCCCccccccHHHHHHHHHHcCCEE-EEeCccCC-----CCcC--CccCC--CccEE---EeccccccccCCCc
Q 021783           63 LVWVESPTNPRQQICDIRKIAEMAHAHGALL-LVDNSIMS-----PVLS--RPLEL--GADIV---MHSATKFIAGHSDV  129 (307)
Q Consensus        63 ~v~~~~~~n~tG~~~~~~~l~~~~~~~~~~l-i~D~a~~~-----~~~~--~~~~~--~~d~~---~~s~~K~~~g~~g~  129 (307)
                      ++++++|+. .|.+.|+++|.+.|   |+.+ ++|+||+.     +.++  .+...  +.|.+   +.|.||.+.+.+- 
T Consensus       300 ~vvit~pTY-dGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQ-  374 (713)
T PRK15399        300 HAVITNSTY-DGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQ-  374 (713)
T ss_pred             EEEEECCCC-CceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccccccch-
Confidence            899999866 79999999999998   6766 69999862     1122  11112  46766   9999999987765 


Q ss_pred             eeEEEEEcChhHHHHHHHH
Q 021783          130 MAGVLAVKGERLAKELYFL  148 (307)
Q Consensus       130 ~~G~~~~~~~~~~~~~~~~  148 (307)
                       +.++.++.....+.+...
T Consensus       375 -aS~iHvk~~vd~~~~n~a  392 (713)
T PRK15399        375 -ASLIHIKGEYDEETFNEA  392 (713)
T ss_pred             -heeeeecCCCCHHHHHHH
Confidence             888888764333344433

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.37  E-value=1.5e-11  Score=105.23  Aligned_cols=232  Identities=17%  Similarity=0.195  Sum_probs=138.6

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcc----------cCC------cEEEEecCCChHHHHhhcC---CCceE
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP----------KTG------VVVKRVNTCDLDEVASAIG---PWTKL   63 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~----------~~g------~~~~~v~~~d~~~l~~~l~---~~~~~   63 (307)
                      |+-+..++.+ .|+|+..+.+|....-.+..-+.          ..|      ..+..+|.+|++.+++++.   ++..+
T Consensus       125 AiRlARa~Tg-R~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAa  203 (432)
T COG0001         125 AIRLARAYTG-RDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAA  203 (432)
T ss_pred             HHHHHHHhhC-CCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEE
Confidence            3333334444 67888777777766543322111          111      3455667789999999987   47899


Q ss_pred             EEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccCCCCcC---CccCCCccEEEeccccccccCCCceeEEEEE
Q 021783           64 VWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAV  136 (307)
Q Consensus        64 v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~---~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~  136 (307)
                      |+++.+....|.+.|    +++|.++|++||+++|.||+.......   .-..+|..--+.++.|.++  .|+.+|++.+
T Consensus       204 VIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PDlttlGKiIG--GGlP~ga~gG  281 (432)
T COG0001         204 VIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPDLTTLGKIIG--GGLPIGAFGG  281 (432)
T ss_pred             EEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcchhhhhhhhc--CCcceeeecc
Confidence            999977666788876    999999999999999999998633322   2233466666677999996  3777999998


Q ss_pred             cChhHHHHHHHHH-HhcCCCC--ChhhHHHHhhccccHHH---HHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchH
Q 021783          137 KGERLAKELYFLQ-NAEGSGL--APFDCWICLRGVKTMAL---RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE  210 (307)
Q Consensus       137 ~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~l~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~  210 (307)
                      +++ +.+.+.... -+...++  .+.........++.+..   ..+++.+...+|.+.|++.-.  .   .+++   .  
T Consensus       282 r~e-iM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~--~---~g~~---~--  350 (432)
T COG0001         282 RAE-IMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAE--R---HGIP---L--  350 (432)
T ss_pred             HHH-HHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH--H---hCCC---e--
Confidence            855 544332222 1111222  23333344444444432   355556666666665553310  0   0000   0  


Q ss_pred             HHhhhccCCCceEEEEeCC-------------HHHHHHHHhcCCcceeecCCCCc
Q 021783          211 LHYSQAKGAGSVLSFLTGS-------------LALSKHVVETTKYFSITVSFGSV  252 (307)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~gi~v~~g~~  252 (307)
                          ..+..++++.+.+.+             .+....++..+..+||...++.+
T Consensus       351 ----~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~GV~l~ps~~  401 (432)
T COG0001         351 ----TVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQF  401 (432)
T ss_pred             ----EEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhCCcccCCccc
Confidence                012346677776632             22355566677778998877653

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.37  E-value=5.6e-12  Score=112.49  Aligned_cols=209  Identities=14%  Similarity=0.178  Sum_probs=124.9

Q ss_pred             HHhhcC-CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCc---CCccCCC--ccEEEecccc
Q 021783           53 VASAIG-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVL---SRPLELG--ADIVMHSATK  121 (307)
Q Consensus        53 l~~~l~-~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~---~~~~~~~--~d~~~~s~~K  121 (307)
                      +++.+. +++++|+++..+...|...+    +++|.++|++||+++|.||++. .+..   .....+|  .|+++  ++|
T Consensus       211 l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~--~gK  288 (443)
T PRK06058        211 IEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLIT--TAK  288 (443)
T ss_pred             HHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEE--Ecc
Confidence            444443 57888998877776677654    9999999999999999999986 2221   1112233  46665  579


Q ss_pred             ccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCC-CccEEec
Q 021783          122 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP-RVKKVNY  200 (307)
Q Consensus       122 ~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~  200 (307)
                      .++  .|..+|+++++++ +.+.+............+..+..+.+.++.+..  +++.++...+.+++.+.- .+.. .+
T Consensus       289 ~l~--~G~Pi~av~~~~~-i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~--~~l~~~~~~~g~~l~~~L~~l~~-~~  362 (443)
T PRK06058        289 GIA--GGLPLSAVTGRAE-IMDAPHPGGLGGTYGGNPVACAAALAAIETIEE--DDLVARARQIEALMTDRLRALAA-ED  362 (443)
T ss_pred             ccc--CCCccEEEEEcHH-HHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHh-hC
Confidence            995  4678999999854 444333222222334455666666666655432  233344444333333210 0000 00


Q ss_pred             CCCCCCCchHHHhhhccCCCceEEEEeCC-------HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHH
Q 021783          201 AGLPEHPGHELHYSQAKGAGSVLSFLTGS-------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ  273 (307)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~  273 (307)
                      +.+.          ..++.|.++.+.+.+       .+....+.+.+.++|+.+..+..+                    
T Consensus       363 ~~i~----------~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~~~--------------------  412 (443)
T PRK06058        363 DRIG----------DVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCGTY--------------------  412 (443)
T ss_pred             CcEE----------eeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHHCCeEEeccCCC--------------------
Confidence            1100          124567788887732       234667788888889987653321                    


Q ss_pred             hcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          274 ARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       274 ~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                           .+.+|+.+.+    +++++.++.|.+++++
T Consensus       413 -----~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~  442 (443)
T PRK06058        413 -----GNVIRLLPPLVIGDELLREGLDVLEAALAD  442 (443)
T ss_pred             -----CCEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence                 2358998765    7888888888888765

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=99.37  E-value=9.2e-12  Score=105.25  Aligned_cols=123  Identities=28%  Similarity=0.331  Sum_probs=95.8

Q ss_pred             cCCCCeEEEcCC-----CCcchHHHHhhhcccCCcEEEEecCC---ChHHHHhhcCCCceEEEEeCCCCCcccc--ccHH
Q 021783           11 LGTGEEIVAGDD-----LYGGTDRLLSRVTPKTGVVVKRVNTC---DLDEVASAIGPWTKLVWVESPTNPRQQI--CDIR   80 (307)
Q Consensus        11 ~~~gd~Vlv~~~-----~~~~~~~~~~~~~~~~g~~~~~v~~~---d~~~l~~~l~~~~~~v~~~~~~n~tG~~--~~~~   80 (307)
                      +.++.+|+++-.     .++...    ..++..|++++++...   ...+++.+|+++|++++-.+.+|. |..  .+.+
T Consensus       103 l~~~~EvVis~g~lV~gg~~~v~----d~~~~aG~~l~EvG~tn~t~~~d~~~AIne~ta~llkV~s~~~-~f~~~l~~~  177 (395)
T COG1921         103 LAEGKEVVVSRGELVEGGAFRVP----DIIRLAGAKLVEVGTTNRTHLKDYELAINENTALLLKVHSSNY-GFTGMLSEE  177 (395)
T ss_pred             hccCCeEEEEccccccCCCCChh----HHHHHcCCEEEEecccCcCCHHHHHHHhccCCeeEEEEeeccc-cccccccHH
Confidence            444666665543     333444    8889999999999864   789999999999998887665553 544  4688


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCC-----cCCccCCCccEEEeccccccccCCCceeEEEEEcChhH
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPV-----LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~  141 (307)
                      ++.++||++|+++++|.+.+...     .......|+|++++|..|.++||.   +|+++++++.+
T Consensus       178 ~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPq---aGii~GkKelI  240 (395)
T COG1921         178 ELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGPQ---AGIIVGKKELI  240 (395)
T ss_pred             HHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCCc---cceEechHHHH
Confidence            89999999999999999986542     224446699999999999999887   89999997765

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.36  E-value=1.9e-11  Score=108.87  Aligned_cols=202  Identities=10%  Similarity=0.130  Sum_probs=119.1

Q ss_pred             CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCcC---CccCCCccEEEeccccccccCCCce
Q 021783           59 PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLELGADIVMHSATKFIAGHSDVM  130 (307)
Q Consensus        59 ~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~~~~~d~~~~s~~K~~~g~~g~~  130 (307)
                      +++.+|+++.+++..|...+    +++|.++|++||+++|.||+|. .|...   ....+|..--+.+++|.++  .|..
T Consensus       206 ~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~gK~l~--~G~p  283 (445)
T PRK08593        206 DEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLA--GGMP  283 (445)
T ss_pred             CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEeeeccccc--CCcc
Confidence            57899999999888888865    9999999999999999999984 33221   1122343223446899995  3566


Q ss_pred             eEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCc
Q 021783          131 AGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG  208 (307)
Q Consensus       131 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~  208 (307)
                      +|+++++++ +.+.+............+..+..+.+.++.++.  ..++..+..+.+.+.|++...    .++.+.    
T Consensus       284 ~gav~~~~~-i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~----~~~~v~----  354 (445)
T PRK08593        284 MSAIVGRKE-IMESLEAPAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRFDQWVS----KYNFVG----  354 (445)
T ss_pred             cEEEEEcHH-HHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh----cCCcEE----
Confidence            899998854 444443111112233445556656666654432  122333333334444432100    001110    


Q ss_pred             hHHHhhhccCCCceEEEEeC--------CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCC
Q 021783          209 HELHYSQAKGAGSVLSFLTG--------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTED  280 (307)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  280 (307)
                            ..++.|.++.+.+.        +...+..+...+..+|+.+....                           .+
T Consensus       355 ------~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~---------------------------~~  401 (445)
T PRK08593        355 ------DVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAVA---------------------------GN  401 (445)
T ss_pred             ------EEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEeccC---------------------------CC
Confidence                  11455666666652        22345678888888888664311                           13


Q ss_pred             eEEEEecc----CChHHHHHHHHHHHhc
Q 021783          281 LVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       281 ~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                      .+|+++.+    ++++..++.|.+++++
T Consensus       402 ~lr~~p~l~~t~~~id~~~~~l~~~l~~  429 (445)
T PRK08593        402 VLRFQPPLVITYEQLDTALNTIEQAFTA  429 (445)
T ss_pred             EEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence            48888876    6777777777777654

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.35  E-value=5.3e-13  Score=111.46  Aligned_cols=188  Identities=23%  Similarity=0.225  Sum_probs=123.0

Q ss_pred             cHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcC------CCceEEEEeCCC
Q 021783            2 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG------PWTKLVWVESPT   70 (307)
Q Consensus         2 aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~------~~~~~v~~~~~~   70 (307)
                      |...++.++++|++.|++.++.|...... .......|++++.++..     |+++|++.+.      +++++|++++++
T Consensus        56 An~~al~~~~~~~~~vi~~~~aHi~~~E~-ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~  134 (290)
T PF01212_consen   56 ANQLALRAHLRPGESVICADTAHIHFDET-GAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTT  134 (290)
T ss_dssp             HHHHHHHHHHHTTEEEEEETTEHHHHSST-THHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSB
T ss_pred             HHHHHHHHHHhcCCceeccccceeeeecc-chhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecC
Confidence            45567777789999999999877533321 12234589999998864     6899998886      368999999998


Q ss_pred             CCc-ccccc---HHHHHHHHHHcCCEEEEeCccC---C---CCcCCccCCCccEEEeccccccccCCCceeEEEEEcChh
Q 021783           71 NPR-QQICD---IRKIAEMAHAHGALLLVDNSIM---S---PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  140 (307)
Q Consensus        71 n~t-G~~~~---~~~l~~~~~~~~~~li~D~a~~---~---~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~  140 (307)
                      |.. |.+++   +++|.++|++||++++.|++--   .   +....-...++|.+..|++|.++.+ +  +++++.+++.
T Consensus       135 ~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~-~--Gavl~~~~~~  211 (290)
T PF01212_consen  135 ELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIAAGADSVSFGGTKNGGAP-G--GAVLAGNKEF  211 (290)
T ss_dssp             TTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SS-S--EEEEEESHHH
T ss_pred             cCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHhhhCCEEEEEEEcccccc-c--ceEEEechHH
Confidence            853 76664   8899999999999999999942   1   2212122247999999999999554 3  7888888775


Q ss_pred             HHHHHHHHHHhcCC-CCChhhHH------HHhhccccHHHHHHHHHHHHHHHHHHHhcCC
Q 021783          141 LAKELYFLQNAEGS-GLAPFDCW------ICLRGVKTMALRVEKQQDNAQKIAEFLASHP  193 (307)
Q Consensus       141 ~~~~~~~~~~~~~~-~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~  193 (307)
                      +.+.........+. ........      ....+++....+..+-.++++++.+.++..+
T Consensus       212 i~~~~~~~k~~gg~~~~~G~~~a~~~~~~~~l~~l~~~~~~~~~~~~~A~~La~~l~~~~  271 (290)
T PF01212_consen  212 IAKARRQRKRLGGGMRQAGVLAAAELYQFAALRALELWLERARHANAMAKRLAAGLEALG  271 (290)
T ss_dssp             HHHHHHHHHHHTHHHHHTTHHHHHHHHHHHHHCHEECSHHHHHCHHHHHHCHHHCHHEEC
T ss_pred             HHHHHHHHHHhccCeeecceeeeechhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHCC
Confidence            65544443322221 11112222      3444455545556666778888888887654

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.34  E-value=6e-11  Score=98.95  Aligned_cols=123  Identities=17%  Similarity=0.210  Sum_probs=89.0

Q ss_pred             HhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcC--CCceEEEEe-CCCCCcccccc
Q 021783            9 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG--PWTKLVWVE-SPTNPRQQICD   78 (307)
Q Consensus         9 ~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~--~~~~~v~~~-~~~n~tG~~~~   78 (307)
                      +...|..+|.+|+|+|+.+.    .+....|.++...|.-       |.+.+.+.++  +...+|++- ..|||||.-++
T Consensus       115 ~~~~~~~~vwis~PtW~NH~----~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t  190 (396)
T COG1448         115 ARFFPDATVWISDPTWPNHK----AIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPT  190 (396)
T ss_pred             HHhCCCceEEeCCCCcHhHH----HHHHhcCCceeeeeccccccccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCC
Confidence            34567888999999999888    5566789999888862       6777777765  333445444 56999999986


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCccC---CCCcCCcc------CCC-ccEEEeccccccccCCCceeEEEEE
Q 021783           79 ---IRKIAEMAHAHGALLLVDNSIM---SPVLSRPL------ELG-ADIVMHSATKFIAGHSDVMAGVLAV  136 (307)
Q Consensus        79 ---~~~l~~~~~~~~~~li~D~a~~---~~~~~~~~------~~~-~d~~~~s~~K~~~g~~g~~~G~~~~  136 (307)
                         -++|.++.++.+.+.+.|-||-   .|...+..      ..+ --+++.|+||.| |.-|-|.|++..
T Consensus       191 ~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnf-gLYgERVGa~~v  260 (396)
T COG1448         191 EEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNF-GLYGERVGALSV  260 (396)
T ss_pred             HHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhh-hhhhhccceeEE
Confidence               5678888899999999999983   33221211      112 269999999999 566777775443

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.31  E-value=1.2e-10  Score=102.95  Aligned_cols=128  Identities=27%  Similarity=0.367  Sum_probs=104.1

Q ss_pred             HHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----------ChHHHHhhcC--CCc-eEEEEeCC
Q 021783            4 LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----------DLDEVASAIG--PWT-KLVWVESP   69 (307)
Q Consensus         4 l~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----------d~~~l~~~l~--~~~-~~v~~~~~   69 (307)
                      .+++++++++||.||++.++|-|..    ..+-..|+.++++...           +.+.+++++.  +.. |++++++|
T Consensus       100 k~vi~a~~~~GD~VLvdRN~HKSi~----~glilaGa~Pvyl~p~~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnp  175 (557)
T COG1982         100 KAVINAVLTPGDKVLVDRNCHKSIH----HGLILAGATPVYLEPSRNPLYGIIGGIPLETFKEALLAHPDAEKLAVITNP  175 (557)
T ss_pred             HHHHHhhcCCCCEEEecCCccHHHH----HHHHHcCCceEEecCCCCccccccCCCCHHHHHHHHHhChhhheeEEEecC
Confidence            3788899999999999999998887    5567789999998752           6788888765  445 88999988


Q ss_pred             CCCccccccHHHHHHHHHHcCCEEEEeCccCC-----CCcCC-ccCCCccEEEeccccccccCCCceeEEEEEcC
Q 021783           70 TNPRQQICDIRKIAEMAHAHGALLLVDNSIMS-----PVLSR-PLELGADIVMHSATKFIAGHSDVMAGVLAVKG  138 (307)
Q Consensus        70 ~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~-----~~~~~-~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~  138 (307)
                      +. .|.+++.++|.+.++++++|+.+|+++..     +..+. ....+.|+++.|+||.+++.+  .+.++..++
T Consensus       176 TY-dGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~~~~~~tqS~HK~l~alS--QaS~iHv~~  247 (557)
T COG1982         176 TY-DGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNGGADFVTQSTHKLLAALS--QASMIHVKD  247 (557)
T ss_pred             cc-ceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhcCceEEEechhhhhhhhh--hhHHHhhCC
Confidence            77 79999999999999999999999999863     22232 333589999999999986554  477777775

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.31  E-value=4.4e-11  Score=106.65  Aligned_cols=202  Identities=15%  Similarity=0.145  Sum_probs=119.7

Q ss_pred             CCceEEEEeCCCCCccccc-c---HHHHHHHHHHcCCEEEEeCccC-CCC---cCCccCCC--ccEEEeccccccccCCC
Q 021783           59 PWTKLVWVESPTNPRQQIC-D---IRKIAEMAHAHGALLLVDNSIM-SPV---LSRPLELG--ADIVMHSATKFIAGHSD  128 (307)
Q Consensus        59 ~~~~~v~~~~~~n~tG~~~-~---~~~l~~~~~~~~~~li~D~a~~-~~~---~~~~~~~~--~d~~~~s~~K~~~g~~g  128 (307)
                      .++++++++.+++..|... |   ++++.++|++||+++|.||++. .|.   ......+|  .|+++  ++|.+++  |
T Consensus       205 ~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~~--G  280 (442)
T TIGR00709       205 DKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVV--MSKAVGG--G  280 (442)
T ss_pred             CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEE--EcccccC--C
Confidence            4678899998877777765 3   9999999999999999999986 222   21222233  46666  8999954  6


Q ss_pred             ceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCC-CccEEecCCCCCCC
Q 021783          129 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP-RVKKVNYAGLPEHP  207 (307)
Q Consensus       129 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~l~~~~  207 (307)
                      .++|+++++++ . ..+............+..+..+.+.++.+..  +.+.++++.+.+++.+.- .+ .-.++.+.   
T Consensus       281 ~Pigav~~~~~-~-~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~L~~l-~~~~~~v~---  352 (442)
T TIGR00709       281 LPLAVLLIAPE-F-DAWQPAGHTGTFRGNQLAMVTGTEALNYWKD--DNLAQNAQERGERITSFLDDM-IKEHPCIG---  352 (442)
T ss_pred             cccEEEEEchH-H-hccCCCcCCCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHH-HHhCCCee---
Confidence            78999999865 3 2221111112233455666666666655432  233344444444333210 00 00011111   


Q ss_pred             chHHHhhhccCCCceEEEEeCCH--------------HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHH
Q 021783          208 GHELHYSQAKGAGSVLSFLTGSL--------------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ  273 (307)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~  273 (307)
                             ..++.|.++.+.+...              +....+...+..+|+.+.....                     
T Consensus       353 -------~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~---------------------  404 (442)
T TIGR00709       353 -------NVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGR---------------------  404 (442)
T ss_pred             -------eeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCC---------------------
Confidence                   1256678888877321              1355677777778887653221                     


Q ss_pred             hcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          274 ARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       274 ~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                          ..+.+|+.+.+    +++++.++.|.++|++
T Consensus       405 ----~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~  435 (442)
T TIGR00709       405 ----EGEVFRLLCPITIDQEECEEGISRFKQAVEE  435 (442)
T ss_pred             ----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                12448888875    7777777888777753

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.29  E-value=2.2e-11  Score=102.75  Aligned_cols=110  Identities=21%  Similarity=0.290  Sum_probs=96.5

Q ss_pred             CCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccc-cHHHHHHHHH
Q 021783           14 GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQIC-DIRKIAEMAH   87 (307)
Q Consensus        14 gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~-~~~~l~~~~~   87 (307)
                      .++||+++-.|+...    .-+.-.|.+|+.|+.+     |+++|++.+.+++.++++++|++ .|..- ++.+|+++.|
T Consensus       157 R~~~LIP~SAHGTNP----ASAam~G~~VV~V~~~~~G~VDlddLk~k~~~~~AalMiTnPsT-~GvFE~~I~ei~~ivH  231 (496)
T COG1003         157 RNICLIPDSAHGTNP----ASAAMAGFKVVVVKCDENGNVDLDDLRAKAEDNLAALMITNPST-LGVFEEDIREICEIVH  231 (496)
T ss_pred             CcEEEeeccccCCCh----hhHhhcCceEEEEecCCCCCccHHHHHHHhccceeEEEeccCcc-cccchhhHHHHHHHHH
Confidence            468999999999888    6678899999999985     99999999999999999999987 57765 6999999999


Q ss_pred             HcCCEEEEeCccCCCCc--CCccCCCccEEEeccccccccCCC
Q 021783           88 AHGALLLVDNSIMSPVL--SRPLELGADIVMHSATKFIAGHSD  128 (307)
Q Consensus        88 ~~~~~li~D~a~~~~~~--~~~~~~~~d~~~~s~~K~~~g~~g  128 (307)
                      ++|..+..|+|.....+  ..+.++|.|++-..+||+|+.|.|
T Consensus       232 ~~Gg~vY~DGANlNA~vG~~rPGd~G~DV~HlNLHKTF~iPHG  274 (496)
T COG1003         232 EAGGQVYYDGANLNAIVGLARPGDMGFDVVHLNLHKTFCIPHG  274 (496)
T ss_pred             HcCCEEEecCcchhhhhccccccccccceEEeecccccccCCC
Confidence            99999999999865443  378889999999999999976655

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.28  E-value=6.4e-11  Score=104.78  Aligned_cols=207  Identities=12%  Similarity=0.128  Sum_probs=123.1

Q ss_pred             HHHHhhcCCCceEEEEeCC-CCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCc---CCccCCC--ccEEEecc
Q 021783           51 DEVASAIGPWTKLVWVESP-TNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVL---SRPLELG--ADIVMHSA  119 (307)
Q Consensus        51 ~~l~~~l~~~~~~v~~~~~-~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~---~~~~~~~--~d~~~~s~  119 (307)
                      +.+++.+..++.+|+++.. +...|...+    +++|.++|++||+++|+||++. .|..   .....+|  .|++  ++
T Consensus       191 ~~~~~~~~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~--t~  268 (422)
T PRK05630        191 RSLELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIM--CV  268 (422)
T ss_pred             HHHHHHHhhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCCCCee--ee
Confidence            3455555568899999984 776777653    9999999999999999999984 2221   1112234  4565  68


Q ss_pred             ccccccCCC-ceeEEEEEcChhHHHHHHHH------HHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 021783          120 TKFIAGHSD-VMAGVLAVKGERLAKELYFL------QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       120 ~K~~~g~~g-~~~G~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~  192 (307)
                      +|.++|  | ..+|+++++++ +.+.+...      .........+..+..+...++.+..  +...++...+.+++++.
T Consensus       269 gK~l~g--G~~p~~av~~~~~-i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~--~~~~~~~~~~g~~l~~~  343 (422)
T PRK05630        269 GKALTG--GFMSFAATLCTDK-VAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIET--GMWRKQVKRIEAELIAG  343 (422)
T ss_pred             echhhc--CccccceeeccHH-HHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHH
Confidence            999954  2 12788888754 44444311      1112233445666666666655532  12233444444433321


Q ss_pred             C-CccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHH
Q 021783          193 P-RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEV  271 (307)
Q Consensus       193 ~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~  271 (307)
                      - .+..  ++.+.          ..++.|.++.+.+.+......+.+.+.++|+.+....                    
T Consensus       344 L~~l~~--~~~v~----------~vRg~Gl~~~ie~~~~~~~~~~~~~~~~~Gl~~~~~g--------------------  391 (422)
T PRK05630        344 LSPLAH--LPGVA----------DVRVLGAIGVVEMEQPVDMEEATQAAVDHGVWLRPFG--------------------  391 (422)
T ss_pred             HHHhhc--CCCee----------eeeccccEEEEEECCcccHHHHHHHHHHCCeEEEecC--------------------
Confidence            0 0000  11111          2266788999988644335677777888888764311                    


Q ss_pred             HHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          272 RQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       272 ~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                              +.+|+.+.+    +++|+.++.|.++|++
T Consensus       392 --------~~l~~~PpL~it~~~i~~~~~~l~~al~~  420 (422)
T PRK05630        392 --------RLVYVMPPYITTSEQIAQICAALAAAVKA  420 (422)
T ss_pred             --------CEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence                    237888865    7777788888777753

>PRK06541 hypothetical protein; Provisional

Probab=99.28  E-value=8.5e-11  Score=105.08  Aligned_cols=209  Identities=15%  Similarity=0.158  Sum_probs=123.5

Q ss_pred             HHHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCcc-CCCCcCC---ccCCC--ccEEE
Q 021783           51 DEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSR---PLELG--ADIVM  116 (307)
Q Consensus        51 ~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~-~~~~~~~---~~~~~--~d~~~  116 (307)
                      +.+++.+.    .++.+|+++..+++.|.+.+    +++|.++|++||+++|.||+| +.|....   ...+|  .|++ 
T Consensus       208 ~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDiv-  286 (460)
T PRK06541        208 DRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDII-  286 (460)
T ss_pred             HHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEE-
Confidence            56777664    45778888888999999887    999999999999999999999 4443221   22233  5666 


Q ss_pred             eccccccccCCCc-eeEEEEEcChhHHHHHHHH-HH---hcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHH
Q 021783          117 HSATKFIAGHSDV-MAGVLAVKGERLAKELYFL-QN---AEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFL  189 (307)
Q Consensus       117 ~s~~K~~~g~~g~-~~G~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l  189 (307)
                       +++|.+++  |. ..|+++++++.. +.+... ..   .......+.....+.+.++.+..  ..++..+..+.+.+.|
T Consensus       287 -t~gK~l~~--G~~pigav~~~~~i~-~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L  362 (460)
T PRK06541        287 -TCAKGITS--GYSPLGAMIASDRLF-EPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATL  362 (460)
T ss_pred             -EecccccC--CccceeEEEEcHHHH-HHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence             48999953  43 478888875543 333211 11   11223344556666655554422  1233344444444444


Q ss_pred             hcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH---------H-----HHHHHHhcCCcceeecCCCCccce
Q 021783          190 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL---------A-----LSKHVVETTKYFSITVSFGSVKSL  255 (307)
Q Consensus       190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-----~~~~~~~~l~~~gi~v~~g~~~~~  255 (307)
                      ++..   .  .+.+          ...++.|.++.+.+...         +     ....+.+.+.++|+.+.....   
T Consensus       363 ~~l~---~--~~~v----------~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~---  424 (460)
T PRK06541        363 EKLL---D--LPIV----------GDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADDR---  424 (460)
T ss_pred             HHhh---c--CCCe----------EEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEecCC---
Confidence            4321   0  1100          01245677888876211         0     012456677778887654211   


Q ss_pred             eecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          256 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       256 ~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                                            +.+.+|+++.+    +++++.++.|.+++++
T Consensus       425 ----------------------g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~  455 (460)
T PRK06541        425 ----------------------GDPVVQLAPPLISGQEEFDEIEQILRSVLTE  455 (460)
T ss_pred             ----------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                                  12459999975    6777777888777754

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.27  E-value=3.1e-11  Score=108.70  Aligned_cols=211  Identities=18%  Similarity=0.162  Sum_probs=126.5

Q ss_pred             HHHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCcc-CCCCcC---CccCCCccEEEec
Q 021783           51 DEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLS---RPLELGADIVMHS  118 (307)
Q Consensus        51 ~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~-~~~~~~---~~~~~~~d~~~~s  118 (307)
                      +++++.+.    +++.+|+++......|.+.+    +++|.++|++||+++|.||++ +.|...   ....+|...-+.+
T Consensus       247 ~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivt  326 (504)
T PLN02760        247 DNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVS  326 (504)
T ss_pred             HHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEE
Confidence            34666552    46789999998888898887    999999999999999999999 444432   2233444333566


Q ss_pred             cccccccCCCceeEEEEEcChhHHHHHHHH-------HHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhc
Q 021783          119 ATKFIAGHSDVMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLAS  191 (307)
Q Consensus       119 ~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~  191 (307)
                      ++|.+++- .+.+|.++++++ +.+.+...       ......+..+..+..+.+.++.++.  +.+.++.+.+.++|+.
T Consensus       327 lgK~lggG-~~PigAv~~~~~-i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~--~~l~~~~~~~g~~l~~  402 (504)
T PLN02760        327 LAKALSSA-YMPIGAVLVSPE-ISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKE--RNIPEHVNKIAPRFQD  402 (504)
T ss_pred             ecccccCC-ccccceEeecHH-HHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHH
Confidence            89999541 122677777744 54444321       1112233456677777777765543  2334444444444332


Q ss_pred             CCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH-----------HHHHHHHhcCCcceeecCCCCccceeeccc
Q 021783          192 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----------ALSKHVVETTKYFSITVSFGSVKSLISMPC  260 (307)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~  260 (307)
                      .-.  .     +..++.    ....++.|.++.+.+.+.           +....+.+.+..+|+.+....         
T Consensus       403 ~L~--~-----l~~~~~----v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g---------  462 (504)
T PLN02760        403 GIK--A-----FSGSPI----IGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVAG---------  462 (504)
T ss_pred             HHH--H-----HhcCCC----eeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEecC---------
Confidence            100  0     001110    011256678888877321           125567777888888765321         


Q ss_pred             ccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          261 FMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                                         +.+|+++.+    ++++++++.|.++|++
T Consensus       463 -------------------~~lrl~Ppl~it~eeid~~~~~l~~al~~  491 (504)
T PLN02760        463 -------------------DNIMMSPPLIITPEEVDELISIYGKALKA  491 (504)
T ss_pred             -------------------CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                               138888764    7888888888888764

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.27  E-value=5.7e-11  Score=109.09  Aligned_cols=128  Identities=13%  Similarity=0.156  Sum_probs=99.0

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----------C-----hHHHHhhcC--CCce---
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----------D-----LDEVASAIG--PWTK---   62 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----------d-----~~~l~~~l~--~~~~---   62 (307)
                      +.+++++.+++||.||++..+|-|..    ..+...|+.+++++..          +     .+.+++.+.  ++.+   
T Consensus       224 n~av~~a~~~~Gd~VLvdRN~HKSv~----haLilsga~PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~  299 (714)
T PRK15400        224 NKIVGMYSAPAGSTVLIDRNCHKSLT----HLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPV  299 (714)
T ss_pred             HHHHHHHhcCCCCEEEeecccHHHHH----HHHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCccccCcc
Confidence            34788889999999999999999888    5678899999998752          3     788888886  3333   


Q ss_pred             EEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCccCC-----CCcC--CccCCCc---c--EEEeccccccccCCCce
Q 021783           63 LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS-----PVLS--RPLELGA---D--IVMHSATKFIAGHSDVM  130 (307)
Q Consensus        63 ~v~~~~~~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~-----~~~~--~~~~~~~---d--~~~~s~~K~~~g~~g~~  130 (307)
                      .+++++|+. .|.+.|+++|.+.|+.++  +++|+||+.     +.++  .+...|.   |  +++.|.||.+.+.+-  
T Consensus       300 ~~vit~pTY-dG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~alTQ--  374 (714)
T PRK15400        300 HAVITNSTY-DGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQ--  374 (714)
T ss_pred             EEEEECCCC-ccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCcChhhcCCCCCCceEEEEchhhcccchhH--
Confidence            788888865 799999999999999887  799999863     2122  2222344   4  999999999977664  


Q ss_pred             eEEEEEcCh
Q 021783          131 AGVLAVKGE  139 (307)
Q Consensus       131 ~G~~~~~~~  139 (307)
                      +.++.++..
T Consensus       375 aS~LHvkg~  383 (714)
T PRK15400        375 ASMIHVKGD  383 (714)
T ss_pred             HhHHHHcCC
Confidence            667666544

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.26  E-value=3.6e-10  Score=92.19  Aligned_cols=218  Identities=18%  Similarity=0.259  Sum_probs=139.4

Q ss_pred             EEEecCCChHHHHhhcC-CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC----CCCcC--CccCC
Q 021783           42 VKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM----SPVLS--RPLEL  110 (307)
Q Consensus        42 ~~~v~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~----~~~~~--~~~~~  110 (307)
                      +..+|.+|.++|+.+++ ++.++++++..+...|++.|    +++..++|.+||+++|.|++|.    +|.+.  +....
T Consensus       188 ~~~v~Y~d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env  267 (427)
T KOG1402|consen  188 VDKVPYGDAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENV  267 (427)
T ss_pred             ceeeccCCHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhc
Confidence            56677789999999997 78999999999999999986    9999999999999999999996    44443  22333


Q ss_pred             CccEEEeccccccccCCCce-eEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHH
Q 021783          111 GADIVMHSATKFIAGHSDVM-AGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFL  189 (307)
Q Consensus       111 ~~d~~~~s~~K~~~g~~g~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l  189 (307)
                      ..|+++  +.|.++|  |+. ...+++. +++...+......+.+.-.+..+..+.++++-+.+  +.+.+++..|.+.+
T Consensus       268 ~PDivi--lgKalSG--G~~Pvsavl~~-~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~e--ekL~era~~lG~~l  340 (427)
T KOG1402|consen  268 RPDIVI--LGKALSG--GVYPVSAVLAD-DDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVE--EKLVERAAKLGEIL  340 (427)
T ss_pred             CCCeEE--EeccccC--CeeeeEEEEec-HHHHhccCCCccccccCCChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            467877  6788853  322 3444444 33444344444444455566777777777775543  66677777776665


Q ss_pred             hcCCCccEEecCCCC-CCCchHHHhhhccCCCceEEEEeCC----HHHHHHHHhcCCcceeecCCCCccceeecccccCC
Q 021783          190 ASHPRVKKVNYAGLP-EHPGHELHYSQAKGAGSVLSFLTGS----LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH  264 (307)
Q Consensus       190 ~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~  264 (307)
                      ...-       ..+. ..|.+   .+..+++|-+..+.+.+    ..++-.+.-.++++|...-+-+             
T Consensus       341 ~~~L-------~~l~~~~p~~---v~~VRGrGl~~ai~i~~~~~~~~~aw~~cl~lk~~g~LAkptH-------------  397 (427)
T KOG1402|consen  341 RDQL-------NKLQKKFPHV---VKEVRGRGLLNAIVINPSKTSGQDAWDVCLALKENGLLAKPTH-------------  397 (427)
T ss_pred             HHHH-------Hhccccccch---hheeeccceEEEEEeccccccchhHHHHHHcccccccccCCCC-------------
Confidence            5321       0010 11111   12235667666666632    1234555556777766433211             


Q ss_pred             CCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHh
Q 021783          265 ASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALR  303 (307)
Q Consensus       265 ~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~  303 (307)
                                    .+-+|+++.+    +|.++-++.+.+.+.
T Consensus       398 --------------~~IiRfaPPL~I~e~dl~eg~e~i~k~i~  426 (427)
T KOG1402|consen  398 --------------GNIIRFAPPLVISEEDLREGIEAIEKTIA  426 (427)
T ss_pred             --------------CCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence                          2349998875    677777777776653

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.25  E-value=1e-10  Score=103.46  Aligned_cols=208  Identities=13%  Similarity=0.095  Sum_probs=124.5

Q ss_pred             ChHHHHhhcC---CCceEEEEeCC-CCCccccc----cHHHHHHHHHHcCCEEEEeCccC-CCCcC---CccCCC--ccE
Q 021783           49 DLDEVASAIG---PWTKLVWVESP-TNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLELG--ADI  114 (307)
Q Consensus        49 d~~~l~~~l~---~~~~~v~~~~~-~n~tG~~~----~~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~~~~--~d~  114 (307)
                      |++++++.+.   .+..+|+++.. +...|...    .+++|.++|++||+++|+||++. .|..-   ....+|  .|+
T Consensus       190 d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~PDi  269 (428)
T PRK07986        190 DIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPDI  269 (428)
T ss_pred             HHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCCCCE
Confidence            5667777774   46778888874 55556543    29999999999999999999984 22211   112333  466


Q ss_pred             EEeccccccccCCC-ceeEEEEEcChhHHHHHHHHH-----HhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHH
Q 021783          115 VMHSATKFIAGHSD-VMAGVLAVKGERLAKELYFLQ-----NAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIA  186 (307)
Q Consensus       115 ~~~s~~K~~~g~~g-~~~G~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~  186 (307)
                      +  +++|.++|  | +.+|.++++++ +.+.+....     ........+..+..+.+.++.++.  ..++..+..+.+.
T Consensus       270 ~--t~gK~l~g--G~~p~~av~~~~~-i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~  344 (428)
T PRK07986        270 L--CLGKALTG--GTMTLSATLTTRE-VAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIEAQLR  344 (428)
T ss_pred             E--EechhhhC--CcccCcchhchHH-HHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            6  48999853  4 24677777644 544443211     112223445666666666665532  1233333333444


Q ss_pred             HHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCC
Q 021783          187 EFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHAS  266 (307)
Q Consensus       187 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~  266 (307)
                      +.+++..   .  ++.+          ...++.|.++.+.+........+.+.+.++|+.+....               
T Consensus       345 ~~l~~l~---~--~~~i----------~~vRg~Gl~~~ve~~~~~~~~~~~~~l~~~Gl~~~~~g---------------  394 (428)
T PRK07986        345 EELAPLR---D--APMV----------ADVRVLGAIGVVETTRPVNMAALQRFFVEQGVWIRPFG---------------  394 (428)
T ss_pred             HHHHHHh---c--CCCE----------EeEeccceEEEEEeCCcccHHHHHHHHHHCCcEEEecC---------------
Confidence            4443211   0  1111          12256788888888644346678888888898775321               


Q ss_pred             CcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          267 IPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       267 ~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                                   +.+|+.+.+    +++++.++.|.+++++
T Consensus       395 -------------~~i~~~Ppl~it~~ei~~~~~~l~~~l~~  423 (428)
T PRK07986        395 -------------KLIYLMPPYIILPEQLQRLTAAVNRAVQD  423 (428)
T ss_pred             -------------CEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence                         238887765    7888888888887753

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.25  E-value=5.9e-11  Score=105.68  Aligned_cols=200  Identities=17%  Similarity=0.155  Sum_probs=119.5

Q ss_pred             CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCcC---CccCCC--ccEEEeccccccccCCC
Q 021783           59 PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLELG--ADIVMHSATKFIAGHSD  128 (307)
Q Consensus        59 ~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~~~~--~d~~~~s~~K~~~g~~g  128 (307)
                      .++.+|+++..+...|...+    +++|.++|++||+++|.|+++. .|...   ....+|  .|+++  ++|.++  .|
T Consensus       220 ~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt--~~K~l~--~G  295 (441)
T PRK05769        220 EEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIIT--LAKAIA--GG  295 (441)
T ss_pred             CceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEE--Eccccc--CC
Confidence            56889999998888899887    9999999999999999999987 22211   122233  47664  789995  35


Q ss_pred             ceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCc
Q 021783          129 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG  208 (307)
Q Consensus       129 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~  208 (307)
                      ..+|+++++++. ...... .........+..+..+.+.++.++.   ++.++.+.+.++|++.-.  .+    ..+++.
T Consensus       296 ~p~gav~~~~~i-~~~~~~-~~~~T~~g~p~~~aaa~a~L~~l~~---~~~~~~~~~g~~l~~~L~--~l----~~~~~~  364 (441)
T PRK05769        296 LPLGAVIGRAEL-MFLPPG-SHANTFGGNPVAAAAALATLEELEE---GLLENAQKLGEYLRKELK--EL----KEKYEF  364 (441)
T ss_pred             cccEEEEEehhh-hhcCCC-CCCCCCCcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--HH----HHhCCC
Confidence            668998888653 322211 1111222345556666666655532   333444444443332100  00    000010


Q ss_pred             hHHHhhhccCCCceEEEEeCC------HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeE
Q 021783          209 HELHYSQAKGAGSVLSFLTGS------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLV  282 (307)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i  282 (307)
                      +    ...++.|.++.+.+.+      .+....+.+.+..+|+.+....                           .+.+
T Consensus       365 ~----~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~~~~---------------------------~~~l  413 (441)
T PRK05769        365 I----GDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGAG---------------------------KSAI  413 (441)
T ss_pred             e----eeeecceEEEEEEeccCCccccHHHHHHHHHHHHhCCcEEecCC---------------------------CCEE
Confidence            0    0124567788887732      1335667777777888764311                           2348


Q ss_pred             EEEecc----CChHHHHHHHHHHHhc
Q 021783          283 RISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       283 Ris~~~----~~~~~~i~~l~~~l~~  304 (307)
                      |+++.+    +++++.++.|.+++++
T Consensus       414 r~~p~l~~t~~~id~~~~~l~~~l~~  439 (441)
T PRK05769        414 RIIPPLIITEEEADIGLEILEEAIKE  439 (441)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            888865    7777888888877764

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=99.25  E-value=7e-11  Score=100.55  Aligned_cols=164  Identities=16%  Similarity=0.194  Sum_probs=122.1

Q ss_pred             HHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHH-cCCEEEEeCccC
Q 021783           28 DRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA-HGALLLVDNSIM  100 (307)
Q Consensus        28 ~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~-~~~~li~D~a~~  100 (307)
                      ...|+.+++.++++++.+|.+      |+..+.+.++++|..++..-++.|+|.+-|+++|.++..+ +++++++|++-+
T Consensus       180 ~~a~eK~a~yf~v~l~~V~~~~~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~G  259 (491)
T KOG1383|consen  180 HAAFEKAARYFEVELREVPLDEGDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLG  259 (491)
T ss_pred             HHHHHHHHhhEEEEEEeeeccccceEecHHHHHHHhccceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCc
Confidence            344668999999999999985      8999999999999999999999999999999999999999 999999999987


Q ss_pred             CCCcC----Cc-----cCCCccEEEeccccccccCCCceeEEEEEcChhHHH-HHHHHHH----------hcCCCCC--h
Q 021783          101 SPVLS----RP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQN----------AEGSGLA--P  158 (307)
Q Consensus       101 ~~~~~----~~-----~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~-~~~~~~~----------~~~~~~~--~  158 (307)
                      ....+    ..     ...++.-+..+.||+-..|+|  .++++.+++.+.. .+.....          ..++..+  .
T Consensus       260 gFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G--~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~v  337 (491)
T KOG1383|consen  260 GFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAG--SSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQV  337 (491)
T ss_pred             cccccccccCccccccCCCCceeEeeccceeeeeecC--cEEEEEcccccccceEEEeccccCccccCcccccCCcccHH
Confidence            54432    22     222567888899998878898  8888888665432 2111111          1222222  2


Q ss_pred             hhHHHHhh--ccccHHHHHHHHHHHHHHHHHHHhcCC
Q 021783          159 FDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHP  193 (307)
Q Consensus       159 ~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~l~~~~  193 (307)
                      ..+|+.+-  |.+.+....+++.++++.+++.++..+
T Consensus       338 a~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~  374 (491)
T KOG1383|consen  338 AAQWAALMSLGEEGYRENTQNIVETARKLREGIENIK  374 (491)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            45665444  346677788888888888888777543

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.23  E-value=2.4e-10  Score=101.89  Aligned_cols=208  Identities=17%  Similarity=0.203  Sum_probs=122.6

Q ss_pred             HHHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCc---CCccCCCc--cEEE
Q 021783           51 DEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVL---SRPLELGA--DIVM  116 (307)
Q Consensus        51 ~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~---~~~~~~~~--d~~~  116 (307)
                      +++++.+.    +++.+|+++......|...+    +++|.++|++||+++|+||+++ .|..   .....++.  |+  
T Consensus       205 ~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi--  282 (445)
T PRK09221        205 DDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPDI--  282 (445)
T ss_pred             HHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCE--
Confidence            46666663    56889999999988999887    9999999999999999999984 3322   12223343  65  


Q ss_pred             eccccccccCCCceeEEEEEcChhHHHHHHHH-------HHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHH
Q 021783          117 HSATKFIAGHSDVMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAE  187 (307)
Q Consensus       117 ~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~  187 (307)
                      .+++|.+++ ....+|.++++++ +.+.+...       ......+..+.....+.+.++.+..  ..++..+..+.+.+
T Consensus       283 ~~~gK~l~g-G~~Pi~av~~~~~-i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~  360 (445)
T PRK09221        283 ITFAKGLTN-GAIPMGAVIASDE-IYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFERAAELAPYFED  360 (445)
T ss_pred             EEecccccc-CcccceeeEEcHH-HHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            468998853 1122677777744 44433210       1112223445556665666655432  12333333333444


Q ss_pred             HHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC-----HHHHHHHHhcCCcceeecCCCCccceeeccccc
Q 021783          188 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-----LALSKHVVETTKYFSITVSFGSVKSLISMPCFM  262 (307)
Q Consensus       188 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~  262 (307)
                      .++...           ..+.+    ...++.|.+..+.+..     ...+..+.+.+.++|+.++.+.           
T Consensus       361 ~l~~l~-----------~~~~v----~~vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~-----------  414 (445)
T PRK09221        361 AVHSLK-----------GLPHV----IDIRNIGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYTG-----------  414 (445)
T ss_pred             HHHhhc-----------cCCCE----EEEecCceEEEEEEecccccccchHHHHHHHHHHCCeEEeecC-----------
Confidence            443221           01100    0124456666666532     1224567777878888775422           


Q ss_pred             CCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          263 SHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                                       +.+|+++.+    ++++++++.|.++++++
T Consensus       415 -----------------~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~  444 (445)
T PRK09221        415 -----------------DTIALSPPLIIEKAQIDELVDALGDALRAV  444 (445)
T ss_pred             -----------------CEEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence                             238998765    67888888888877654

>PRK06062 hypothetical protein; Provisional

Probab=99.23  E-value=5.4e-11  Score=106.16  Aligned_cols=209  Identities=15%  Similarity=0.146  Sum_probs=123.9

Q ss_pred             hHHHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCcC---CccCCCccEEEe
Q 021783           50 LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLELGADIVMH  117 (307)
Q Consensus        50 ~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~~~~~d~~~~  117 (307)
                      ++++++.++    +++.+|+++..+...|.+.+    +++|.++|++||+++|+||+++ .|..-   ....+|+.--+.
T Consensus       200 ~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~  279 (451)
T PRK06062        200 LAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLI  279 (451)
T ss_pred             HHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCCee
Confidence            566777774    46789999998888898887    9999999999999999999986 22221   122334333345


Q ss_pred             ccccccccCCCc-eeEEEEEcChhHHHHHHHH--HHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHH-----HHH
Q 021783          118 SATKFIAGHSDV-MAGVLAVKGERLAKELYFL--QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIA-----EFL  189 (307)
Q Consensus       118 s~~K~~~g~~g~-~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~-----~~l  189 (307)
                      +++|.+++  |. .+|.++++++ +.+.+...  ......+..+..+..+.+.++.++.  +++.++++.+.     +.|
T Consensus       280 t~gK~lgg--G~~Pigav~~~~~-i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~--~~l~~~~~~~G~~~l~~~L  354 (451)
T PRK06062        280 TFAKGVNS--GYVPLGGVAISEA-IAATFADRPYPGGLTYSGHPLACAAAVATINAMEE--EGIVENAARIGAEVLGPGL  354 (451)
T ss_pred             eechhhhc--CCcCcEEEEEcHH-HHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHH
Confidence            68999964  32 3677777754 55444321  1111223345666666666665532  22334443333     333


Q ss_pred             hcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH--------------HHHHHHHhcCCcceeecCCCCccce
Q 021783          190 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--------------ALSKHVVETTKYFSITVSFGSVKSL  255 (307)
Q Consensus       190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~gi~v~~g~~~~~  255 (307)
                      ++...    .++.+.          ..++.|.++.+.+...              .....+.+.+.++|+.+...     
T Consensus       355 ~~l~~----~~~~v~----------~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~-----  415 (451)
T PRK06062        355 RELAE----RHPSVG----------EVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVN-----  415 (451)
T ss_pred             HHHHh----cCCcEE----------eEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEeec-----
Confidence            32110    001000          1144566777766310              12556777788888865321     


Q ss_pred             eecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          256 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       256 ~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                                             .+.+|+++.+    +++++.++.|.++|+++
T Consensus       416 -----------------------~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~  446 (451)
T PRK06062        416 -----------------------GNRIHVVPPCTVTEDEVREGLAILDAALAVA  446 (451)
T ss_pred             -----------------------CCEEEEECCccCCHHHHHHHHHHHHHHHHHh
Confidence                                   2248888854    78888888888887654

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=99.22  E-value=5.2e-09  Score=95.48  Aligned_cols=171  Identities=16%  Similarity=0.114  Sum_probs=120.4

Q ss_pred             eEEEcCCCCcchHHHHhhhcccCCc---EEEEecCC-----ChHHHHhhcC----C--CceEEEEeCCCCCccccccHHH
Q 021783           16 EIVAGDDLYGGTDRLLSRVTPKTGV---VVKRVNTC-----DLDEVASAIG----P--WTKLVWVESPTNPRQQICDIRK   81 (307)
Q Consensus        16 ~Vlv~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~-----d~~~l~~~l~----~--~~~~v~~~~~~n~tG~~~~~~~   81 (307)
                      +++++...|.+..    +++...|+   .++.||.+     |+++|++.+.    .  .+-+|+.+..++.+|.+-|+++
T Consensus       224 ~vl~s~~aHyS~~----KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~e  299 (608)
T TIGR03811       224 KWLVPQTKHYSWL----KAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDK  299 (608)
T ss_pred             EEEECCCccHHHH----HHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHH
Confidence            6889988898887    66777787   57788874     8899988885    1  2445666778889999999999


Q ss_pred             HHHHH---HHcCC--EEEEeCccCCCC---cCC--------------------c----------------cCCCccEEEe
Q 021783           82 IAEMA---HAHGA--LLLVDNSIMSPV---LSR--------------------P----------------LELGADIVMH  117 (307)
Q Consensus        82 l~~~~---~~~~~--~li~D~a~~~~~---~~~--------------------~----------------~~~~~d~~~~  117 (307)
                      |+++|   +++|+  ++++|+||+...   +.+                    .                .-..+|.++.
T Consensus       300 I~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItv  379 (608)
T TIGR03811       300 IVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTI  379 (608)
T ss_pred             HHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEe
Confidence            99999   67887  699999998532   111                    0                0025899999


Q ss_pred             ccccccccCCCceeEEEEEcChhHHHHHHHHHH-----------------hcCCCCC--hhhHHHHhhc----cccHHHH
Q 021783          118 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-----------------AEGSGLA--PFDCWICLRG----VKTMALR  174 (307)
Q Consensus       118 s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~-----------------~~~~~~~--~~~~~~~~~~----l~~~~~~  174 (307)
                      ++||++..|-+  +|+++.|+..+.+.+.....                 ..++...  ....|+....    .+.+...
T Consensus       380 DpHK~g~~Py~--~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~  457 (608)
T TIGR03811       380 DPHKMGYIPYS--AGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKL  457 (608)
T ss_pred             CcccccccCCC--eEEEEEeCHHHHHHHhcCcchhccccccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHH
Confidence            99999888887  99999998865443321110                 1122222  3445554433    3466777


Q ss_pred             HHHHHHHHHHHHHHHhcC
Q 021783          175 VEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       175 ~~~~~~~~~~l~~~l~~~  192 (307)
                      .++..+.++++.+.++..
T Consensus       458 i~~~i~~A~~~~~~L~~~  475 (608)
T TIGR03811       458 IGASIEGAHRFYDFLNNL  475 (608)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            788888888888888764

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.22  E-value=1.5e-10  Score=103.07  Aligned_cols=210  Identities=16%  Similarity=0.215  Sum_probs=121.4

Q ss_pred             hHHHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCcc-CCCCcC---CccCCC--ccEE
Q 021783           50 LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLS---RPLELG--ADIV  115 (307)
Q Consensus        50 ~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~-~~~~~~---~~~~~~--~d~~  115 (307)
                      ++++++.+.    +++.+|+++..+...|...+    +++|.++|++||+++|+||++ +.|..-   ....+|  .|++
T Consensus       201 ~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv  280 (442)
T PRK13360        201 ADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLL  280 (442)
T ss_pred             HHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCcee
Confidence            356777764    56789999999988899887    999999999999999999999 444322   122334  4554


Q ss_pred             EeccccccccCCCceeEEEEEcChhHHHHHHHH-------HHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHH
Q 021783          116 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF  188 (307)
Q Consensus       116 ~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~  188 (307)
                        +++|.+++ ..+..|.++++++ +.+.+...       .........+.....+.+.++.+..  +.+.++++++.++
T Consensus       281 --t~gK~l~g-G~~P~gav~~~~~-i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~--~~l~~~~~~~g~~  354 (442)
T PRK13360        281 --TCAKGLTN-GAIPMGAVFVSSE-IHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYER--EGLLTRAARLAPY  354 (442)
T ss_pred             --eeeecccc-CccceEEEEEcHH-HHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHH
Confidence              78999953 1133677777744 44433211       1112223445556666666655432  1233344443333


Q ss_pred             HhcCCC-ccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC-----HHHHHHHHhcCCcceeecCCCCccceeeccccc
Q 021783          189 LASHPR-VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-----LALSKHVVETTKYFSITVSFGSVKSLISMPCFM  262 (307)
Q Consensus       189 l~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~  262 (307)
                      +.+.-. +..  ++.+.          ..++.|.+..+.+..     .+.+..+.+.+.++|+.+..+.           
T Consensus       355 l~~~l~~l~~--~~~v~----------~vrG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~~~-----------  411 (442)
T PRK13360        355 WEDALHSLRD--APHVI----------DIRNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYTG-----------  411 (442)
T ss_pred             HHHHHHHhhc--CCCee----------eeeccceEEEEEEecCCCCcchhHHHHHHHHHHCCcEEEecC-----------
Confidence            332100 000  11110          113445555555521     1235567777777888765321           


Q ss_pred             CCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          263 SHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                                       +.+|+++.+    +++|+.++.|.++++++
T Consensus       412 -----------------~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~  441 (442)
T PRK13360        412 -----------------DILALSPPLIIEEAQIDELFDILAQALKET  441 (442)
T ss_pred             -----------------CEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence                             238998764    77888888887777653

>PRK12403 putative aminotransferase; Provisional

Probab=99.22  E-value=5.3e-10  Score=100.11  Aligned_cols=208  Identities=13%  Similarity=0.079  Sum_probs=121.1

Q ss_pred             HHHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCcC---CccCCC--ccEEE
Q 021783           51 DEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLELG--ADIVM  116 (307)
Q Consensus        51 ~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~~~~--~d~~~  116 (307)
                      +++++.+.    +++.+|+++..+...|...+    +++|.++|++||+++|.||+++ .|..-   ....+|  .|+++
T Consensus       209 ~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~  288 (460)
T PRK12403        209 LQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLS  288 (460)
T ss_pred             HHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCCeEE
Confidence            45555542    46788999998888888876    9999999999999999999995 22221   222233  57775


Q ss_pred             eccccccccCCCc-eeEEEEEcChhHHHHHHHHH----HhcCCCCChhhHHHHhhccccHHHH--HHHHH-HHHHHHHHH
Q 021783          117 HSATKFIAGHSDV-MAGVLAVKGERLAKELYFLQ----NAEGSGLAPFDCWICLRGVKTMALR--VEKQQ-DNAQKIAEF  188 (307)
Q Consensus       117 ~s~~K~~~g~~g~-~~G~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~-~~~~~l~~~  188 (307)
                        ++|.+++  |. ..|.++++++ +.+.+....    ........+..+..+.+.++.++..  .++.. +..+.+.+.
T Consensus       289 --~gK~lgg--G~~Piga~v~~~~-i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~  363 (460)
T PRK12403        289 --IAKGLTS--GYVPMGGLVLSKR-IAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRC  363 (460)
T ss_pred             --Ecccccc--cccceEEEEECHH-HHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence              8999863  32 3676677644 544443111    1122235566777777777655331  22222 333344444


Q ss_pred             HhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH-----------HHHHHHHhcCCcceeecCCCCccceee
Q 021783          189 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----------ALSKHVVETTKYFSITVSFGSVKSLIS  257 (307)
Q Consensus       189 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~gi~v~~g~~~~~~~  257 (307)
                      |++..   . .++.+.          ..++.|.++.+.+...           .....+...+.++|+.+....      
T Consensus       364 L~~l~---~-~~~~i~----------~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~------  423 (460)
T PRK12403        364 LREVF---G-DHPLVG----------EVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRSTL------  423 (460)
T ss_pred             HHHHH---h-cCCCEE----------eEeecceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEEEEecC------
Confidence            43210   0 011111          1255677888877321           012234445566777664211      


Q ss_pred             cccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          258 MPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       258 ~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                                            +.+|+++.+    +++++.++.|.++|+++
T Consensus       424 ----------------------~~~~l~Ppl~it~~eid~~~~~l~~al~~~  453 (460)
T PRK12403        424 ----------------------GRMIMAPALVAGRAEIDELVDKTRIAVDRT  453 (460)
T ss_pred             ----------------------CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence                                  127777765    78899999998888654

>PRK07678 aminotransferase; Validated

Probab=99.21  E-value=1.4e-10  Score=103.58  Aligned_cols=216  Identities=19%  Similarity=0.234  Sum_probs=126.7

Q ss_pred             HHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCc---CCccCCC--ccEEEec
Q 021783           53 VASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVL---SRPLELG--ADIVMHS  118 (307)
Q Consensus        53 l~~~l~----~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~---~~~~~~~--~d~~~~s  118 (307)
                      +++.+.    +++.+|+++..+...|...+    ++++.++|++||+++|.||++. .|..   .....+|  .|++  +
T Consensus       202 l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDiv--t  279 (451)
T PRK07678        202 IDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDII--T  279 (451)
T ss_pred             HHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEE--E
Confidence            455553    57899999988877788765    9999999999999999999984 3332   1222344  4666  5


Q ss_pred             cccccccCCCceeEEEEEcChhHHHHHHHH------HHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 021783          119 ATKFIAGHSDVMAGVLAVKGERLAKELYFL------QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       119 ~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~  192 (307)
                      ++|.+++ ..+.+|.++++++ +.+.+...      .........+..+..+.+.++.++.  +.+.++.+++.++|.+.
T Consensus       280 ~gK~lgg-G~~Pi~av~~~~~-i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~--~~~~~~~~~~g~~l~~~  355 (451)
T PRK07678        280 MAKGITS-AYLPLSATAVKKE-IYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMEN--ENLIERSAQLGELLLEQ  355 (451)
T ss_pred             eeccccc-CCcceeEEEEcHH-HHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHH
Confidence            7999964 2244888888855 44444321      1122234455666666666665533  12333443333333221


Q ss_pred             CCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC---------CHHHHHHHHhcCCcceeecCCCCccceeecccccC
Q 021783          193 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG---------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS  263 (307)
Q Consensus       193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~  263 (307)
                      -.      ..+..++.+    ...++.|.++.+.+.         +.+.+..+...+..+|+.+.....       ... 
T Consensus       356 l~------~~~~~~~~v----~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~-------~v~-  417 (451)
T PRK07678        356 LK------EELGEHPLV----GDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGD-------TVA-  417 (451)
T ss_pred             HH------HHHhcCCCE----EEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCc-------ccc-
Confidence            00      000011100    012556778887772         123356778888888987753211       000 


Q ss_pred             CCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          264 HASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                                   ...+.+|+++.+    +|+++.++.|.++++++
T Consensus       418 -------------~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~  450 (451)
T PRK07678        418 -------------GYNNVLTLSPPLVISSEEIAFIVGTLKTALERI  450 (451)
T ss_pred             -------------CCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence                         012459998865    77888888888887764

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.21  E-value=3.2e-10  Score=94.44  Aligned_cols=130  Identities=19%  Similarity=0.169  Sum_probs=93.3

Q ss_pred             HHHHHHHh--cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcC-----CCceEEEEeC
Q 021783            3 ALAAVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG-----PWTKLVWVES   68 (307)
Q Consensus         3 al~~~~~~--~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~-----~~~~~v~~~~   68 (307)
                      |+-.++.+  -.+++-|+++-|.|+-+.    .-+..+|...+..-++       |.++|++.++     -+++++++-+
T Consensus       148 ai~~il~l~~~~~~~GvliPiPQYPLYs----Ati~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvIN  223 (475)
T KOG0258|consen  148 AIRSILSLLIAGKKTGVLIPIPQYPLYS----ATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVIN  223 (475)
T ss_pred             HHHHHHHHHhcCCCCceEeecCCCchhH----HHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEEC
Confidence            34344443  357899999999998777    5556677765544432       7788877765     3678888889


Q ss_pred             CCCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-------------CccCCCc----cEEEeccccccccCCC
Q 021783           69 PTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-------------RPLELGA----DIVMHSATKFIAGHSD  128 (307)
Q Consensus        69 ~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-------------~~~~~~~----d~~~~s~~K~~~g~~g  128 (307)
                      |.||||.+..   +++|..+|+++++.++.|++|-.-.+.             .+.....    -+...|.||.+.|--|
T Consensus       224 PGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG  303 (475)
T KOG0258|consen  224 PGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECG  303 (475)
T ss_pred             CCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeec
Confidence            9999999984   999999999999999999998422111             1111111    2556777999888888


Q ss_pred             ceeEEEEE
Q 021783          129 VMAGVLAV  136 (307)
Q Consensus       129 ~~~G~~~~  136 (307)
                      -|+|++=.
T Consensus       304 ~RGGYmEv  311 (475)
T KOG0258|consen  304 QRGGYMES  311 (475)
T ss_pred             ccCCeeec
Confidence            88998754

>PRK05965 hypothetical protein; Provisional

Probab=99.20  E-value=2.2e-10  Score=102.45  Aligned_cols=209  Identities=13%  Similarity=0.127  Sum_probs=127.7

Q ss_pred             HHHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CC---CcCCccCCC--ccEEE
Q 021783           51 DEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SP---VLSRPLELG--ADIVM  116 (307)
Q Consensus        51 ~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~---~~~~~~~~~--~d~~~  116 (307)
                      +++++.+.    +++.+|+++..+...|...+    +++|.++|++||+++|.||++. .|   .......+|  .|+++
T Consensus       202 ~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~  281 (459)
T PRK05965        202 AALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVPDLMT  281 (459)
T ss_pred             HHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCCCeEE
Confidence            46666664    46889999988887787764    9999999999999999999985 33   222333344  45555


Q ss_pred             eccccccccCCC-ceeEEEEEcChhHHHHHHHH-------HHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHH
Q 021783          117 HSATKFIAGHSD-VMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF  188 (307)
Q Consensus       117 ~s~~K~~~g~~g-~~~G~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~  188 (307)
                        ++|.++|  | +.+|.++++++ +.+.+...       .........+..+..+.+.++.++.  +++.+++..+.++
T Consensus       282 --~gKgl~g--G~~Pi~av~~~~~-i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~--~~l~~~~~~~g~~  354 (459)
T PRK05965        282 --VAKGLTS--GYVPMGAVLMSDH-VYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHE--GGLLANGQKAGPR  354 (459)
T ss_pred             --echhhcc--CCcceeEEEEcHH-HHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHH
Confidence              7999854  4 34888888755 44444211       1112233445666666666655432  3345555555555


Q ss_pred             HhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC-----------HHHHHHHHhcCCcceeecCCCCccceee
Q 021783          189 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-----------LALSKHVVETTKYFSITVSFGSVKSLIS  257 (307)
Q Consensus       189 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~v~~g~~~~~~~  257 (307)
                      +.+.-.  .     +..+|.+    ...++.|.++.+.+..           .+....+.+.+.++|+.++..       
T Consensus       355 l~~~l~--~-----l~~~~~v----~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~-------  416 (459)
T PRK05965        355 FAAGLD--A-----LRAHPLV----GDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRAF-------  416 (459)
T ss_pred             HHHHHH--h-----hccCCCE----EEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEec-------
Confidence            543210  0     1111110    1225677888887721           113566777788888876431       


Q ss_pred             cccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          258 MPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       258 ~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                                          +++.+|+.+.+    +++++.++.|.++|++
T Consensus       417 --------------------g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~  447 (459)
T PRK05965        417 --------------------GDGVLGFAPALCCTEGEFDLIFERTRKTLDD  447 (459)
T ss_pred             --------------------CCcEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence                                12348888554    7888888888888764

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.20  E-value=4.5e-10  Score=99.57  Aligned_cols=206  Identities=14%  Similarity=0.141  Sum_probs=126.6

Q ss_pred             hHHHHhhcC---CCceEEEEeCC-CCCcccccc----HHHHHHHHHHcCCEEEEeCccCCCC--cCC---ccCCC--ccE
Q 021783           50 LDEVASAIG---PWTKLVWVESP-TNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPV--LSR---PLELG--ADI  114 (307)
Q Consensus        50 ~~~l~~~l~---~~~~~v~~~~~-~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~~~~--~~~---~~~~~--~d~  114 (307)
                      ++.+++.+.   +++.+|+++.. +...|...+    ++++.++|++||+++|+||+| .|.  .-.   ...+|  .|+
T Consensus       193 l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~-tG~GrtG~~~a~~~~gv~PDi  271 (429)
T PRK06173        193 IEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIA-TGFGRTGKLFALEHAGVVPDI  271 (429)
T ss_pred             HHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchh-cCCCcCCcchHHHhcCCCCCE
Confidence            556677764   57899999985 777777753    999999999999999999998 332  111   12233  566


Q ss_pred             EEeccccccccCCCc-eeEEEEEcChhHHHHHHHH-----HHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHH
Q 021783          115 VMHSATKFIAGHSDV-MAGVLAVKGERLAKELYFL-----QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIA  186 (307)
Q Consensus       115 ~~~s~~K~~~g~~g~-~~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~  186 (307)
                      ++  ++|.++|  |. .++.++.+++ +.+.+...     .........+..+..+.+.++.+..  ..++..+..+.+.
T Consensus       272 v~--~gK~l~g--G~~p~~a~~~~~~-i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~  346 (429)
T PRK06173        272 MC--IGKALTG--GYLTLSATITTEA-IAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIEAQLK  346 (429)
T ss_pred             EE--eehhhhC--CccccceEEecHH-HHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            65  8999853  42 3677777644 44443210     1111223455666666666665532  1233333444444


Q ss_pred             HHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCC
Q 021783          187 EFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHAS  266 (307)
Q Consensus       187 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~  266 (307)
                      +.|+...   .  ++.+.          ..++.|.++.+.+.+......+.+.+.++|+.+....               
T Consensus       347 ~~L~~~~---~--~~~v~----------~vRg~Gl~~~iel~~~~~~~~i~~~l~e~Gi~v~~~g---------------  396 (429)
T PRK06173        347 QELAPAA---E--FDSVA----------EVRVLGAIGVVEMKEPVNMATLQPRFVEHGIWVRPFG---------------  396 (429)
T ss_pred             HHHHHhh---c--CCCee----------eeeccceEEEEEeCCcccHHHHHHHHHHCCeEEEecC---------------
Confidence            4443210   0  11111          1245688888988655446778888888898775421               


Q ss_pred             CcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          267 IPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       267 ~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                                   +.+|+.+.+    +++++.++.|.++|++
T Consensus       397 -------------~~l~~~Ppl~it~~ei~~~~~~l~~~l~~  425 (429)
T PRK06173        397 -------------KLVYIMPPFIISPDELSQLTSGLLRVLKQ  425 (429)
T ss_pred             -------------CEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence                         137887765    7888888888888764

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.20  E-value=1.5e-10  Score=103.36  Aligned_cols=201  Identities=10%  Similarity=0.099  Sum_probs=119.1

Q ss_pred             CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCcC---CccCC--CccEEEeccccccccCCC
Q 021783           59 PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLEL--GADIVMHSATKFIAGHSD  128 (307)
Q Consensus        59 ~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~~~--~~d~~~~s~~K~~~g~~g  128 (307)
                      .++.+|+++..+...|...+    +++|.++|++||+++|.||++. .|...   ....+  ..|+++  ++|.+++  |
T Consensus       221 ~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~g--G  296 (457)
T PRK05639        221 DEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLII--FGKGVAS--G  296 (457)
T ss_pred             CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEE--echhhcC--C
Confidence            57899999988887787664    9999999999999999999986 22111   11222  357776  8999963  3


Q ss_pred             ceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCccEEecCCCCCC
Q 021783          129 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH  206 (307)
Q Consensus       129 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~  206 (307)
                      ..+|+++++++ +.+.... .........+.....+.+.++.+..  ..++..+..+.+.+.|++...  +  ++.+.  
T Consensus       297 ~pi~av~~~~~-i~~~~~~-~~~~T~~g~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~--~--~~~~~--  368 (457)
T PRK05639        297 MGLSGVIGRKE-LMDLTSG-SALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKE--S--FEVIG--  368 (457)
T ss_pred             CcceeEEehHH-HHhhcCC-CcccCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH--h--CCCEE--
Confidence            44788888755 4332111 1112223445556666666655432  122222233334433332100  0  01111  


Q ss_pred             CchHHHhhhccCCCceEEEEeCC------HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCC
Q 021783          207 PGHELHYSQAKGAGSVLSFLTGS------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTED  280 (307)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  280 (307)
                              ..++.|.++.+.+..      .+....+.+.+..+|+.+....                         ...+
T Consensus       369 --------~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~g-------------------------~~~~  415 (457)
T PRK05639        369 --------DVRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLILPSYG-------------------------MFGN  415 (457)
T ss_pred             --------eeccceeEEEEEEecCCCCCCHHHHHHHHHHHHhCCeEEeecC-------------------------CCCC
Confidence                    125667788877621      2335677778888888765321                         1134


Q ss_pred             eEEEEecc----CChHHHHHHHHHHHhc
Q 021783          281 LVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       281 ~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                      .+|+++.+    +++++.++.|.++++.
T Consensus       416 ~lr~~Ppl~it~~~id~~~~~l~~~l~~  443 (457)
T PRK05639        416 VIRITPPLVITKEIAEKGLEIMERAIKD  443 (457)
T ss_pred             EEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence            59999976    6777777888777654

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.18  E-value=1.4e-10  Score=103.74  Aligned_cols=211  Identities=16%  Similarity=0.171  Sum_probs=124.8

Q ss_pred             hHHHHhhcC------CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-C---CCcCCccCCC--cc
Q 021783           50 LDEVASAIG------PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-S---PVLSRPLELG--AD  113 (307)
Q Consensus        50 ~~~l~~~l~------~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~---~~~~~~~~~~--~d  113 (307)
                      ++.+++.+.      +++.+|+++..+...|.+.+    ++++.++|++||+++|.||++. .   |.+.....+|  .|
T Consensus       215 ~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PD  294 (464)
T PRK06938        215 LHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPD  294 (464)
T ss_pred             HHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCC
Confidence            456777765      25789999988877787764    9999999999999999999985 3   3222223344  45


Q ss_pred             EEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCC
Q 021783          114 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP  193 (307)
Q Consensus       114 ~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~  193 (307)
                      +++  ++|.++|  |+..|.++++++ + +.+............+.....+.+.++.+..  +++.++++.+.++|.+.-
T Consensus       295 iv~--~gKglgg--G~PlsAv~~~~~-~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~--~~l~~~~~~~G~~l~~~L  366 (464)
T PRK06938        295 VVV--LSKAIGG--SLPLAVVVYREW-L-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKE--HRLAEHAAAMGERLREHL  366 (464)
T ss_pred             EEE--eeccccC--CCceEEEeehhH-h-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHH
Confidence            555  7999853  566888888754 3 2221111111223344566666666655432  234445555444443221


Q ss_pred             -CccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC--------------HHHHHHHHhcCCcceeecCCCCccceeec
Q 021783          194 -RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--------------LALSKHVVETTKYFSITVSFGSVKSLISM  258 (307)
Q Consensus       194 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~  258 (307)
                       .+.. .++.+.          ..++.|.++.+.+..              .+....+...+..+|+.+..+..      
T Consensus       367 ~~l~~-~~~~i~----------~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~------  429 (464)
T PRK06938        367 RQLQR-DYPQLG----------DVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELGGR------  429 (464)
T ss_pred             HHHHH-hCCCee----------eeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEeecCC------
Confidence             0000 001111          125667788887732              12345677777778887754321      


Q ss_pred             ccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          259 PCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       259 p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                                         ..+.+|+.+.+    +++++.++.|.++|.+
T Consensus       430 -------------------~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~  460 (464)
T PRK06938        430 -------------------HGSVVRFLPPLIITAEQIDEVAEIFAEAVAA  460 (464)
T ss_pred             -------------------CCCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence                               12348887654    7788888888887764

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.17  E-value=2.5e-10  Score=101.19  Aligned_cols=218  Identities=12%  Similarity=0.104  Sum_probs=128.7

Q ss_pred             EEecCCChHHHHhhcC---CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccCCCC-c---CCccCC-
Q 021783           43 KRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPV-L---SRPLEL-  110 (307)
Q Consensus        43 ~~v~~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~~~~-~---~~~~~~-  110 (307)
                      ..++.+|++++++.+.   +++.+|+++......|...+    +++|.++|++||+++|+||++. |. .   .....+ 
T Consensus       181 ~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~R~G~~ga~~~~g  259 (433)
T PRK00615        181 LSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT-GFRVAQGGAAAIYH  259 (433)
T ss_pred             EeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-cccccHhHHHHhcC
Confidence            3445678888888874   46789999998888888876    6799999999999999999994 32 1   111223 


Q ss_pred             -CccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHH-h--cCCCCChhhHHHHhhccccHHH--HHHHHHHHHHH
Q 021783          111 -GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-A--EGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQK  184 (307)
Q Consensus       111 -~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~  184 (307)
                       ..|++  +++|.+++  |..+|+++++++ +.+.+..... .  ......+..+..+.+.++.++.  ..++..+..+.
T Consensus       260 v~PDi~--~~gK~lgg--G~p~~av~~~~~-i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~  334 (433)
T PRK00615        260 VKPDIT--VYGKILGG--GLPAAAVVAHKS-IMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQN  334 (433)
T ss_pred             CCCCeE--EEcccccC--CcceeeeeecHH-HHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence             35665  48999963  344888888755 4444321111 1  1222355666666666654432  13333333344


Q ss_pred             HHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC-------------CHHHHHHHHhcCCcceeecCCCC
Q 021783          185 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-------------SLALSKHVVETTKYFSITVSFGS  251 (307)
Q Consensus       185 l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~gi~v~~g~  251 (307)
                      +.+.|++...  +   .++   + +.    ..+ .+.++.+.+.             +.+....+..++.++|+.+....
T Consensus       335 l~~~l~~~~~--~---~g~---~-v~----~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~  400 (433)
T PRK00615        335 FLSPIEEMIR--S---QGF---P-VS----LVR-YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSP  400 (433)
T ss_pred             HHHHHHHHHH--H---cCC---C-eE----EEe-eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCcc
Confidence            4333332100  0   000   0 00    002 3556666652             12334578888888899776543


Q ss_pred             ccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          252 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       252 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      ..                         ..+++.....+|+++.++.+.++++++
T Consensus       401 ~~-------------------------~~~ls~~ht~~did~~~~a~~~~~~~~  429 (433)
T PRK00615        401 FE-------------------------ASFLSSAHSMENLDYAQNVLIDSLEKV  429 (433)
T ss_pred             cc-------------------------ccceecCCCHHHHHHHHHHHHHHHHHH
Confidence            21                         112555555588999999999888754

>PRK06105 aminotransferase; Provisional

Probab=99.17  E-value=3.7e-10  Score=101.10  Aligned_cols=211  Identities=13%  Similarity=0.104  Sum_probs=126.1

Q ss_pred             HHHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCcC---CccCCCccEEEec
Q 021783           51 DEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLELGADIVMHS  118 (307)
Q Consensus        51 ~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~~~~~d~~~~s  118 (307)
                      +++++.+.    .++.+|+++..+...|...+    ++++.++|++||+++|.||++. .|..-   ....++..--+.+
T Consensus       205 ~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~  284 (460)
T PRK06105        205 NELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILV  284 (460)
T ss_pred             HHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCeee
Confidence            55666662    46789999988888888876    9999999999999999999984 44322   2223343333446


Q ss_pred             cccccccCCCceeEEEEEcChhHHHHHHHHH-------HhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhc
Q 021783          119 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-------NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLAS  191 (307)
Q Consensus       119 ~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~  191 (307)
                      ++|.++|- .+.+|+++++++ +.+.+....       ........+..+..+.+.++.+..  +++.++.+.+.++|++
T Consensus       285 ~gK~lggG-~~P~~av~~~~~-i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~--~~l~~~v~~~g~~l~~  360 (460)
T PRK06105        285 MSKQLSSS-YQPLSAVLMNEK-VYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEE--RDLVGNAAERGARLQA  360 (460)
T ss_pred             eecccccC-cccceEEEEcHH-HHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHH
Confidence            89999641 133788888744 544443211       112234455666666666665543  2334444444444432


Q ss_pred             CCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC-----------HHHHHHHHhcCCcceeecCCCCccceeeccc
Q 021783          192 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-----------LALSKHVVETTKYFSITVSFGSVKSLISMPC  260 (307)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~  260 (307)
                      .-.  .     +..+|.+    ...++.|.++.+.+..           .+.+..+...+..+|+.+....         
T Consensus       361 ~L~--~-----l~~~~~v----~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~g---------  420 (460)
T PRK06105        361 RLR--A-----LADHPLV----GEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRAMG---------  420 (460)
T ss_pred             HHH--H-----hhcCCCe----EEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEecC---------
Confidence            100  0     1111110    1225567777777621           1124567777777888765311         


Q ss_pred             ccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          261 FMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                                         +.+|+++.+    +++++.++.|.+++++
T Consensus       421 -------------------~~i~l~Ppl~it~~eid~~~~~l~~~l~~  449 (460)
T PRK06105        421 -------------------DTLAFCPPLIITAAQVDEMVDRFGRALDD  449 (460)
T ss_pred             -------------------CEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence                               238888764    7888888888888764

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.16  E-value=1.6e-10  Score=102.98  Aligned_cols=209  Identities=19%  Similarity=0.163  Sum_probs=120.5

Q ss_pred             hHHHHhhcC---CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCcC---CccCC--CccEEE
Q 021783           50 LDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLEL--GADIVM  116 (307)
Q Consensus        50 ~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~~~--~~d~~~  116 (307)
                      ++++++.+.   .++.+|+++..+...|.+.+    +++|.++|++||+++|.||++. .|...   ....+  ..|+++
T Consensus       212 ~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~  291 (443)
T PRK08297        212 LAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVA  291 (443)
T ss_pred             HHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEE
Confidence            345555664   67899999988887887753    9999999999999999999985 33321   11122  357665


Q ss_pred             eccccccccCCCceeEEEEEcChhHHHHHHH-H----HHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhc
Q 021783          117 HSATKFIAGHSDVMAGVLAVKGERLAKELYF-L----QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLAS  191 (307)
Q Consensus       117 ~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~  191 (307)
                        ++|.+ ++    +|++..+ + +.+.... .    .........+.....+.+.++.+..  +.+.++.+++.+++.+
T Consensus       292 --~gK~l-~~----~a~l~~~-~-i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~--~~l~~~~~~~g~~l~~  360 (443)
T PRK08297        292 --FGKKT-QV----CGIMAGR-R-VDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEE--DGLVENAARQGEYLLA  360 (443)
T ss_pred             --ecccc-cc----cceecch-H-HHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHH
Confidence              79987 32    4555543 2 2221111 1    1112223345555555555554422  2333444444443332


Q ss_pred             CCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHH
Q 021783          192 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEV  271 (307)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~  271 (307)
                      .-.  .+    ....|.+   ....++.|.++.+.+.+.+....+.+.+..+|+.+.++.                    
T Consensus       361 ~L~--~l----~~~~~~~---~~~vrg~G~~~~i~~~~~~~~~~~~~~l~~~Gvl~~~~~--------------------  411 (443)
T PRK08297        361 RLE--EL----AAEFPAV---VSNVRGRGLMCAFDLPTTADRDEVIRRLWEEGVLVLPCG--------------------  411 (443)
T ss_pred             HHH--HH----HHHCCCc---ceeeeccceEEEEEecCHHHHHHHHHHHHHCCEEEecCC--------------------
Confidence            100  00    0000100   001245688888998766556788888888898775422                    


Q ss_pred             HHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          272 RQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       272 ~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                             .+.+|+++++    +++++.++.|.++++++
T Consensus       412 -------~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~  442 (443)
T PRK08297        412 -------ERSIRFRPALTVTTEEIDAAIDALRRALPEV  442 (443)
T ss_pred             -------CCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence                   1238887765    67788888888777654

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.16  E-value=2.9e-09  Score=100.21  Aligned_cols=117  Identities=21%  Similarity=0.214  Sum_probs=96.6

Q ss_pred             CCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEE
Q 021783           14 GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALL   93 (307)
Q Consensus        14 gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~~~~~l   93 (307)
                      ..+|+|++..|+.+...++..++..|++++.      +++++.++.++..+++++|+. .|.+.|+++|.+++|+.|.++
T Consensus       168 ~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~------~~~~~~~~~~~~~v~vq~P~~-~G~i~d~~~i~~~~h~~gal~  240 (954)
T PRK12566        168 SNRFFVDEHCHPQTLSVLRTRAEGFGFELVV------DAVDNLAAHAVFGALLQYPDT-HGEIRDLRPLIDQLHGQQALA  240 (954)
T ss_pred             CCEEEECCCCCHHHHHHHHHhhhcCCcEEEE------cchhhcCCCCEEEEEEECCCC-ceEEccHHHHHHHHHHcCCEE
Confidence            5789999999999999999999999999885      444455666789999999986 799999999999999999886


Q ss_pred             EEeCcc--CCCCcCCccCCCccEEEecccc-----ccccCCCceeEEEEEcChhH
Q 021783           94 LVDNSI--MSPVLSRPLELGADIVMHSATK-----FIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        94 i~D~a~--~~~~~~~~~~~~~d~~~~s~~K-----~~~g~~g~~~G~~~~~~~~~  141 (307)
                      + +.+.  +.+.+..+.++|+|+++++.+-     .||||.   .|++.++++..
T Consensus       241 ~-~~~d~laL~ll~~Pge~GADI~vG~~Q~fGvp~~~GGP~---ag~~a~~~~~~  291 (954)
T PRK12566        241 C-VAADLLSLLVLTPPGELGADVVLGSTQRFGVPMGYGGPH---AAYFACRDDYK  291 (954)
T ss_pred             E-EEeCHHHHhCCCChhhcCCcEEeeCCCcCCCCCCCCCCC---eeeeeehHHHH
Confidence            6 4443  4567778999999999998775     566665   89999997643

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.16  E-value=1.8e-09  Score=95.99  Aligned_cols=217  Identities=16%  Similarity=0.157  Sum_probs=129.0

Q ss_pred             EEEEecCCChHHHHhhcC---CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccCCCCcC---CccCC
Q 021783           41 VVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS---RPLEL  110 (307)
Q Consensus        41 ~~~~v~~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~---~~~~~  110 (307)
                      ++..++.+|++.+++.+.   .++.+|+++...+..|.+.+    +++|.++|++||+++|.||++......   ....+
T Consensus       178 ~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~~  257 (428)
T PRK12389        178 EVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLL  257 (428)
T ss_pred             ceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcchhhHHh
Confidence            345566778999988885   46889999999888898887    999999999999999999998733111   11123


Q ss_pred             C--ccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH---HHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHH
Q 021783          111 G--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL---QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQ  183 (307)
Q Consensus       111 ~--~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~  183 (307)
                      |  .|+  .+++|.+++  |+.+|.++++++ +.+.+...   .........+..+..+.+.++.++.  ..++..+..+
T Consensus       258 gv~PDi--vt~gK~lgg--G~Pi~av~~~~~-i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g~  332 (428)
T PRK12389        258 GVEPDL--TALGKIIGG--GLPIGAYGGRKD-IMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGA  332 (428)
T ss_pred             CCCCCe--eeechhhcC--CCceeEEeEHHH-HHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            4  465  468999954  455788888754 54444211   1112223455666666666655432  2233333334


Q ss_pred             HHHHHHhc----CCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC-------------CHHHHHHHHhcCCcceee
Q 021783          184 KIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-------------SLALSKHVVETTKYFSIT  246 (307)
Q Consensus       184 ~l~~~l~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~gi~  246 (307)
                      .+.+.|++    ++.+..+                 .+ ..+++.+.+.             +.+....+.+.+..+|+.
T Consensus       333 ~l~~~L~~l~~~~~~~~~v-----------------~r-~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~  394 (428)
T PRK12389        333 MLEEGILEAAEKHGITITI-----------------NR-LKGALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGIN  394 (428)
T ss_pred             HHHHHHHHHHHhCCCCEEE-----------------Ee-cCcEEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcE
Confidence            44444432    1111000                 01 1235555442             112356777888888987


Q ss_pred             cCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          247 VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       247 v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      +....... .                        .+.+.++.+|++++++.|.++++++
T Consensus       395 ~~~~~~~~-~------------------------~~~l~~t~e~id~~~~~l~~~l~~~  428 (428)
T PRK12389        395 LAPSKYEA-W------------------------FLTTAHTEEDIEETLEAVDRAFAQL  428 (428)
T ss_pred             eecCCCCC-e------------------------eecCCCCHHHHHHHHHHHHHHHHhC
Confidence            76532100 0                        0122334478999999999988653

>PRK07482 hypothetical protein; Provisional

Probab=99.15  E-value=2.5e-10  Score=102.24  Aligned_cols=212  Identities=12%  Similarity=0.099  Sum_probs=123.3

Q ss_pred             hHHHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCC---cCCccCCC--ccEE
Q 021783           50 LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPV---LSRPLELG--ADIV  115 (307)
Q Consensus        50 ~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~---~~~~~~~~--~d~~  115 (307)
                      ++++++.+.    +++.+|+++..+...|...+    +++|.++|++||+++|.||++. .|.   ......+|  .|++
T Consensus       206 ~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv  285 (461)
T PRK07482        206 ADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLI  285 (461)
T ss_pred             HHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEE
Confidence            466777763    46899999988877787753    9999999999999999999985 332   22223344  5666


Q ss_pred             EeccccccccCCCc-eeEEEEEcChhHHHHHHHH-------HHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHH
Q 021783          116 MHSATKFIAGHSDV-MAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE  187 (307)
Q Consensus       116 ~~s~~K~~~g~~g~-~~G~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~  187 (307)
                      +  +.|.++|  |. .+|.++++++ +.+.+...       .........+..+..+.+.++.+..  +.+.++++.+.+
T Consensus       286 ~--~gKgl~g--G~~Pi~av~~~~~-i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~--~~l~~~~~~~g~  358 (461)
T PRK07482        286 T--VAKGLTS--AYAPLSGSIVGEK-VWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILER--ENLVGNAAEVGA  358 (461)
T ss_pred             E--Ecccccc--CccccceeeecHH-HHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHh--CCHHHHHHHHHH
Confidence            6  7999854  32 3677777744 44433211       1112223445666666666665432  233444444444


Q ss_pred             HHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC-H----------HHHHHHHhcCCcceeecCCCCcccee
Q 021783          188 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-L----------ALSKHVVETTKYFSITVSFGSVKSLI  256 (307)
Q Consensus       188 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~l~~~gi~v~~g~~~~~~  256 (307)
                      ++.+.-.  .    ..+.+|.+    ...++.|.++.+.+.. .          .....+...+..+|+.++.+..    
T Consensus       359 ~l~~~L~--~----l~~~~~~v----~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~~----  424 (461)
T PRK07482        359 YFRARLR--A----AFGDHPLV----GEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMPH----  424 (461)
T ss_pred             HHHHHHH--H----HHhcCCCE----EEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCCC----
Confidence            4332100  0    00011100    0125567788887731 1          1245677777778887643210    


Q ss_pred             ecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          257 SMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       257 ~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                                            .+.+|+.+.+    +|+++.++.|.++|++
T Consensus       425 ----------------------~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~  454 (461)
T PRK07482        425 ----------------------GDILGFAPPLVLTRAEADEIVAIAKDAVDE  454 (461)
T ss_pred             ----------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                                  1237777654    7888888888887754

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.14  E-value=3.4e-10  Score=101.07  Aligned_cols=209  Identities=12%  Similarity=0.127  Sum_probs=125.5

Q ss_pred             hHHHHhhcC---CCceEEEEeC-CCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCc---CCccCCC--ccEE
Q 021783           50 LDEVASAIG---PWTKLVWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVL---SRPLELG--ADIV  115 (307)
Q Consensus        50 ~~~l~~~l~---~~~~~v~~~~-~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~---~~~~~~~--~d~~  115 (307)
                      ++++++.+.   .++.+|+++. ++...|...+    ++++.++|++||+++|.||++. .|..   .....+|  .|++
T Consensus       208 ~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDiv  287 (453)
T PRK06943        208 LADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFL  287 (453)
T ss_pred             HHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeE
Confidence            466777664   5789999998 4777787653    9999999999999999999985 3332   2223344  4666


Q ss_pred             EeccccccccCCC-ceeEEEEEcChhHHHHHHHH------HHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHH
Q 021783          116 MHSATKFIAGHSD-VMAGVLAVKGERLAKELYFL------QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF  188 (307)
Q Consensus       116 ~~s~~K~~~g~~g-~~~G~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~  188 (307)
                      +  ++|.++|  | +.+|.++++++ +.+.+...      .........+..+..+.+.++.++.  +++.++..++.++
T Consensus       288 t--~gKgl~g--G~~Pi~av~~~~e-i~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~--~~l~~~~~~~G~~  360 (453)
T PRK06943        288 C--LSKGISG--GYLPLSLVLSRDA-IFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAE--DDVLARNARKSAR  360 (453)
T ss_pred             e--eehhhcc--CcccceEEEEcHH-HHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHH
Confidence            5  6998853  4 34888888755 44433211      0111222345566666666655533  2334444444444


Q ss_pred             HhcCC-CccEEecCCCCCCCchHHHhhhccCCCceEEEEeC-CH----HHHHHHHhcCCcceeecCCCCccceeeccccc
Q 021783          189 LASHP-RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SL----ALSKHVVETTKYFSITVSFGSVKSLISMPCFM  262 (307)
Q Consensus       189 l~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~  262 (307)
                      +.+.- .+..  ++.+.          ..++.|.++.+.+. +.    +....+...+..+|+.+....           
T Consensus       361 l~~~L~~l~~--~~~v~----------~vrG~Gl~~gvel~~~~~~~~~~~~~i~~~~~~~Gll~~~~g-----------  417 (453)
T PRK06943        361 LRAALAPLAA--HPQVR----------HLRQRGTIFAFDVALDGDAARTFSRRFFEAALERELLLRPIG-----------  417 (453)
T ss_pred             HHHHHHHHhc--CCCEE----------eEeccccEEEEEEccCCCcchHHHHHHHHHHHHCCcEEEecC-----------
Confidence            43221 0000  11111          22567888888874 21    235567777777888664311           


Q ss_pred             CCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          263 SHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                                       +.+|+++.+    +++++.++.|.++|+++
T Consensus       418 -----------------~~l~~~Ppl~it~~eid~~~~~l~~al~~~  447 (453)
T PRK06943        418 -----------------TTVYLMPPYVLDDDEIAWLAERTRATLDAT  447 (453)
T ss_pred             -----------------CEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence                             127887654    78888888888888653

>PRK06149 hypothetical protein; Provisional

Probab=99.14  E-value=5.4e-10  Score=108.59  Aligned_cols=204  Identities=17%  Similarity=0.194  Sum_probs=127.2

Q ss_pred             CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCcc-CCCCcC----CccCCC--ccEEEeccccccccCC
Q 021783           59 PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLS----RPLELG--ADIVMHSATKFIAGHS  127 (307)
Q Consensus        59 ~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~-~~~~~~----~~~~~~--~d~~~~s~~K~~~g~~  127 (307)
                      .++.+|+++......|.+.+    ++++.++|++||+++|.||++ +.|...    ....+|  .|++  +++|.+++  
T Consensus       743 ~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDiv--t~gK~lg~--  818 (972)
T PRK06149        743 RGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDII--TMAKGMGN--  818 (972)
T ss_pred             CceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEE--EecccccC--
Confidence            46789999988888888877    999999999999999999999 444332    122234  4665  68999953  


Q ss_pred             CceeEEEEEcChhHHHHHHHHH-HhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCC
Q 021783          128 DVMAGVLAVKGERLAKELYFLQ-NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH  206 (307)
Q Consensus       128 g~~~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~  206 (307)
                      |..+|+++++++ +.+.+.... ...+...++..+..+.+.++.++.  +++.++++.+.++|++.-.  .+    ...+
T Consensus       819 G~Pl~av~~~~~-i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~--e~l~~~~~~~G~~l~~~L~--~l----~~~~  889 (972)
T PRK06149        819 GHPLGAVITRRE-IAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLRE--EKLQENARRVGDHLKARLE--AL----ADRH  889 (972)
T ss_pred             CeeeEEEEEcHH-HHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHH--HH----HHhC
Confidence            455899998854 544443211 112234556677777777765533  3445556544444432210  00    0001


Q ss_pred             CchHHHhhhccCCCceEEEEeC--------CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCC
Q 021783          207 PGHELHYSQAKGAGSVLSFLTG--------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT  278 (307)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~  278 (307)
                      |.+    ...++.|.++.+.+.        ..+....+.+.+.++||.+.....                         .
T Consensus       890 ~~i----~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g~-------------------------~  940 (972)
T PRK06149        890 PLI----GAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGD-------------------------H  940 (972)
T ss_pred             CCe----EEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecCC-------------------------C
Confidence            100    112566778888772        223456788888888997754221                         2


Q ss_pred             CCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          279 EDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       279 ~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                      .+.+|+.+.+    ++++..++.|.++|.+
T Consensus       941 ~~vl~~~Ppl~it~~~id~~~~~l~~~l~~  970 (972)
T PRK06149        941 LNILKIKPPLCLDRESADFFVDMLDRVLTE  970 (972)
T ss_pred             CCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence            3458887764    7888888888888864

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.14  E-value=1e-09  Score=97.39  Aligned_cols=207  Identities=11%  Similarity=0.052  Sum_probs=122.3

Q ss_pred             ChHHHHhhcC---CCceEEEEeCC-CCCccccc----cHHHHHHHHHHcCCEEEEeCccC-CCCcC---CccCC--CccE
Q 021783           49 DLDEVASAIG---PWTKLVWVESP-TNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLEL--GADI  114 (307)
Q Consensus        49 d~~~l~~~l~---~~~~~v~~~~~-~n~tG~~~----~~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~~~--~~d~  114 (307)
                      |++++++.+.   .+.++|+++.. +...|...    .+++|.++|++||+++|+||+|. .|...   ....+  ..|+
T Consensus       193 ~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi  272 (427)
T TIGR00508       193 AITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPDI  272 (427)
T ss_pred             HHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCCE
Confidence            4566666664   46788899875 66555543    49999999999999999999983 22211   11122  3566


Q ss_pred             EEeccccccccCCCc-eeEEEEEcChhHHHHHHHHH-----HhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHH
Q 021783          115 VMHSATKFIAGHSDV-MAGVLAVKGERLAKELYFLQ-----NAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIA  186 (307)
Q Consensus       115 ~~~s~~K~~~g~~g~-~~G~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~  186 (307)
                      ++  ++|.++|  |. .++.++.+++ +.+.+....     ........+.....+.+.++.+..  ..++..+..+++.
T Consensus       273 ~~--~gK~l~g--G~~p~~a~~~~~~-~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~  347 (427)
T TIGR00508       273 LC--VGKALTG--GYMTLSATVTTDK-VAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIENQLK  347 (427)
T ss_pred             EE--echhhhc--CcccceEEEEcHH-HHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            65  8999843  43 3666776644 544443211     111122345566666666654432  1233444444555


Q ss_pred             HHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCC
Q 021783          187 EFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHAS  266 (307)
Q Consensus       187 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~  266 (307)
                      +.|++..   .  ++.+.          ..++.|.++.+.+.+......+.+.+.++||.+....               
T Consensus       348 ~~L~~l~---~--~~~i~----------~vrg~G~~~~i~~~~~~~~~~~~~~l~~~Gv~~~~~~---------------  397 (427)
T TIGR00508       348 RELSPLR---K--NPVVK----------DVRVLGAIGVVEMYKPVNVEELQKKFVEQGVWIRPFG---------------  397 (427)
T ss_pred             HHHHHhh---c--CCCEE----------eEeccccEEEEEECCccCHHHHHHHHHHCCeEEEecC---------------
Confidence            5554321   0  11111          1255688888888644446778888888888764311               


Q ss_pred             CcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHh
Q 021783          267 IPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALR  303 (307)
Q Consensus       267 ~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~  303 (307)
                                   +.+|+++.+    +|++++++.|.++|+
T Consensus       398 -------------~~l~~~ppl~~t~~~id~~~~~l~~~l~  425 (427)
T TIGR00508       398 -------------KLIYVMPPYIITTEQLQKLTAALIEALH  425 (427)
T ss_pred             -------------CEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence                         138888874    677777777777764

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=99.14  E-value=4.8e-10  Score=94.96  Aligned_cols=129  Identities=13%  Similarity=0.083  Sum_probs=90.2

Q ss_pred             CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC--------ChHHHHhhcC---CCceEEEEeCCCCCcccccc-H
Q 021783           12 GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--------DLDEVASAIG---PWTKLVWVESPTNPRQQICD-I   79 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--------d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~-~   79 (307)
                      ..++.|+.+...|-+.+    ..+...|.+++.||..        |.+.+++.+.   ++..+.++++++-..|...| +
T Consensus        99 ~~a~~Viw~ridqkSc~----kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i  174 (389)
T PF05889_consen   99 PKAKYVIWPRIDQKSCF----KAIERAGLEPVVVENVLEGDELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDI  174 (389)
T ss_dssp             CT--EEEEEEEETHHHH----HHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----H
T ss_pred             cCCceEEEeeccccchH----HHHHhcCCeEEEeeccCCCCeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccH
Confidence            56899999999988887    5567789999999852        5666666664   56678888888777889988 9


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcC------CccCC-CccEEEeccccccccCCCceeEEEEEcChhHHHHHH
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLS------RPLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  146 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~------~~~~~-~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~  146 (307)
                      .+|+++|++||++.++.+||+.-...      ..... -.|+.+.|+.|.|.-|.|  ++.+...++.......
T Consensus       175 ~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~vqS~dkNF~VPvG--gai~As~~~~~i~~vs  246 (389)
T PF05889_consen  175 EEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAFVQSTDKNFMVPVG--GAIMASFDPSGILAVS  246 (389)
T ss_dssp             HHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEEEEEHHHHHCEESS--HEEEEESSHHHHHHHH
T ss_pred             HHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCcceeeeecCCCEEecCC--CcEEEecCHHHHHHHH
Confidence            99999999999999999999963211      11122 278999999999888887  7788877765544433

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>PRK07481 hypothetical protein; Provisional

Probab=99.13  E-value=9.3e-10  Score=98.28  Aligned_cols=203  Identities=19%  Similarity=0.198  Sum_probs=119.4

Q ss_pred             CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCc---CCccCCC--ccEEEeccccccccCCC
Q 021783           59 PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVL---SRPLELG--ADIVMHSATKFIAGHSD  128 (307)
Q Consensus        59 ~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~---~~~~~~~--~d~~~~s~~K~~~g~~g  128 (307)
                      +++.+|+++..+...|...+    ++++.++|++||+++|.||++. .|..   .....+|  .|+++  ++|.+++  |
T Consensus       212 ~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~g--G  287 (449)
T PRK07481        212 DTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMC--LAKGITS--G  287 (449)
T ss_pred             CcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEE--EeecccC--C
Confidence            56899999988887888764    9999999999999999999985 3222   1222334  46555  7999854  3


Q ss_pred             -ceeEEEEEcChhHHHHHHHH-------HHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEec
Q 021783          129 -VMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNY  200 (307)
Q Consensus       129 -~~~G~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  200 (307)
                       +.+|.++++++ +.+.+...       .........+.....+.+.++.+..  +++.++++.+.+++.+.-.  .+  
T Consensus       288 ~~Pi~av~~~~~-i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~L~--~l--  360 (449)
T PRK07481        288 YVPLGATMVNAR-IADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVR--EDLPANAAKRGAYLLEGLQ--PL--  360 (449)
T ss_pred             CcCceEEEEcHH-HHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHH--HH--
Confidence             23788888754 54444321       1111222345556666666654432  2334444444444332100  00  


Q ss_pred             CCCCCCCchHHHhhhccCCCceEEEEeCC-----------HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcH
Q 021783          201 AGLPEHPGHELHYSQAKGAGSVLSFLTGS-----------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV  269 (307)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~  269 (307)
                        .+.++.    ....++.|.++.+.+..           ......+...+..+|+.+....                  
T Consensus       361 --~~~~~~----i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g------------------  416 (449)
T PRK07481        361 --KERFEL----VGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPSG------------------  416 (449)
T ss_pred             --hhcCCC----eEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEecC------------------
Confidence              000110    01125567788877631           1234567777777888765421                  


Q ss_pred             HHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcCC
Q 021783          270 EVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTGP  306 (307)
Q Consensus       270 ~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~~  306 (307)
                                +.+|+++.+    +++|+.++.|.++++++.
T Consensus       417 ----------~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~  447 (449)
T PRK07481        417 ----------TKIILSPPLVIQREDVDRIVDALDAGLSAVP  447 (449)
T ss_pred             ----------CEEEEECCCCCCHHHHHHHHHHHHHHHHhcc
Confidence                      127777654    788888899998887764

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.12  E-value=2.1e-10  Score=101.96  Aligned_cols=207  Identities=12%  Similarity=0.112  Sum_probs=116.6

Q ss_pred             hHHHHhhcC---CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCC---cCCccCCC----ccE
Q 021783           50 LDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPV---LSRPLELG----ADI  114 (307)
Q Consensus        50 ~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~---~~~~~~~~----~d~  114 (307)
                      ++++++.+.   .++.+|+++......|...+    +++|.++|++||+++|.||++. .|.   ......+|    .|+
T Consensus       238 l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi  317 (464)
T TIGR00699       238 LEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDM  317 (464)
T ss_pred             HHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCE
Confidence            455666664   46899999998888898886    9999999999999999999984 222   11112223    566


Q ss_pred             EEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCC
Q 021783          115 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPR  194 (307)
Q Consensus       115 ~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~  194 (307)
                        .+++|.+++     +|+++.+ +.+.. .............+..+..+.+.++.+..  +++.++++.+.+++++.-.
T Consensus       318 --~t~gK~lg~-----gG~~~~~-~~~~~-~~~~~~~~T~~gnp~~~aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~L~  386 (464)
T TIGR00699       318 --VTFSKKFQT-----AGYFFHD-PAFRP-NKPYRQFNTWMGDPSRALILREIIQEIKR--KDLLENVAHVGDYLYTGLE  386 (464)
T ss_pred             --EEehhhhcc-----CCccccc-hhccC-CCCcccccCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHH
Confidence              557999842     3444333 21110 00011112223344555565555554432  3344455443333332100


Q ss_pred             ccEEecCCCCCCCchHHHhhhcc--CCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHH
Q 021783          195 VKKVNYAGLPEHPGHELHYSQAK--GAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR  272 (307)
Q Consensus       195 ~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~  272 (307)
                        .+    ...+|..   ....+  +.|.++.+.+.+...+..+.+.+..+|+.+...                      
T Consensus       387 --~l----~~~~~~~---i~~vRg~G~Glm~gie~~~~~~~~~i~~~~~~~Gvl~~~~----------------------  435 (464)
T TIGR00699       387 --DL----QKKYPEF---IQNLRGKGRGTFIAWDTPDEAKRDKLLKKARNNGVNIGGC----------------------  435 (464)
T ss_pred             --HH----HHhCCCc---eeeecccCeEEEEEEecCCHHHHHHHHHHHHHCCcEEecC----------------------
Confidence              00    0001100   00113  568888898876555778888888888876531                      


Q ss_pred             HhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 021783          273 QARGLTEDLVRISVGIEDVNDLISDLDKALR  303 (307)
Q Consensus       273 ~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  303 (307)
                           +.+.+|+++.+.-.++.++.+.++|+
T Consensus       436 -----g~~~ir~~Ppl~it~~eid~~~~~l~  461 (464)
T TIGR00699       436 -----GVKAIRLRPMLVFQKHHADIFLEIIS  461 (464)
T ss_pred             -----CCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence                 12449999987555555555554443

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.11  E-value=2.2e-08  Score=83.03  Aligned_cols=184  Identities=19%  Similarity=0.198  Sum_probs=115.2

Q ss_pred             cHHHHHHHhcCCCCeEEE---cCCCCcchHHHHhhhcccCCcEEEEecC-----------CChHHHHhhcC-CCceEEEE
Q 021783            2 AALAAVTHLLGTGEEIVA---GDDLYGGTDRLLSRVTPKTGVVVKRVNT-----------CDLDEVASAIG-PWTKLVWV   66 (307)
Q Consensus         2 aal~~~~~~~~~gd~Vlv---~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----------~d~~~l~~~l~-~~~~~v~~   66 (307)
                      |++++..++++|+|+|.-   |+..|-+.-..  .-.+..-+.-+++..           .|-|.|++... -++++|+.
T Consensus       118 ANfavYtall~Ph~RiMGLDLP~GGHLsHGy~--T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk~iia  195 (477)
T KOG2467|consen  118 ANFAVYTALLKPHERIMGLDLPSGGHLSHGYQ--TPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATLFRPKLIIA  195 (477)
T ss_pred             hhhHHHhhhcCCCCeeeeccCCCCCccccccc--cCCceeeeeeeecccCceeeCCCCCceehHHHHHHHHhcCCcEEEe
Confidence            456778889999999984   44444333211  101111122222221           16788877654 57887775


Q ss_pred             eCCCCCccccccHHHHHHHHHHcCCEEEEeCccC-----CCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChh-
Q 021783           67 ESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-  140 (307)
Q Consensus        67 ~~~~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~-----~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~-  140 (307)
                      -...  ....+|.+++.++|.+.|++++.|=+|-     .+..+++.++ +|++++++||.+.||+   +|++..|+-. 
T Consensus       196 G~Sa--Y~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey-~DiVTTTTHKsLRGPR---g~mIFyRkGvk  269 (477)
T KOG2467|consen  196 GTSA--YSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEY-CDIVTTTTHKSLRGPR---GAMIFYRKGVK  269 (477)
T ss_pred             cccc--chhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccc-cceeeccccccccCCc---ceeEEEeccCC
Confidence            4333  3467899999999999999999999984     5566777775 9999999999998776   7988887521 


Q ss_pred             -------------HHHHHHHH---HHhcCCCCC---hhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCC
Q 021783          141 -------------LAKELYFL---QNAEGSGLA---PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP  193 (307)
Q Consensus       141 -------------~~~~~~~~---~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~  193 (307)
                                   +.+.+...   ..+.|....   ..+..+-.+.-..+....++..+|++.+.+.|..+.
T Consensus       270 ~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~G  341 (477)
T KOG2467|consen  270 SIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISRG  341 (477)
T ss_pred             cCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence                         11111111   011111111   112222222334567778888999999999998763

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.11  E-value=1.1e-09  Score=97.96  Aligned_cols=221  Identities=13%  Similarity=0.100  Sum_probs=124.3

Q ss_pred             EEEecCCChHHHHhhcC---CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccCCCCcC----CccCC
Q 021783           42 VKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS----RPLEL  110 (307)
Q Consensus        42 ~~~v~~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~----~~~~~  110 (307)
                      +..++.+|++++++.+.   .++.+|+++......|.+.+    +++|.++|++||+++|+||++. |...    ....+
T Consensus       225 ~~~~~~nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~t-GfR~g~~ga~~~~  303 (474)
T PLN02482        225 TLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMT-GFRIAYGGAQEYF  303 (474)
T ss_pred             eEEecCCChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CeecCcchHhHHh
Confidence            45567789999998885   46789999988888888775    7799999999999999999984 3211    11123


Q ss_pred             CccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHH-hcCCC--CChhhHHHHhhccccHHH--HHHHHHHHHHHH
Q 021783          111 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-AEGSG--LAPFDCWICLRGVKTMAL--RVEKQQDNAQKI  185 (307)
Q Consensus       111 ~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l  185 (307)
                      |..--+.+++|.+++  |...|.+.++++ +.+.+..... ..+++  ..+.......+.++.++.  ..++..+..+.+
T Consensus       304 gv~PDi~t~gK~lgg--G~Pigav~g~~e-i~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l  380 (474)
T PLN02482        304 GITPDLTTLGKVIGG--GLPVGAYGGRRE-IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKL  380 (474)
T ss_pred             CCCCCEEEecchhhC--CCceEEEEEcHH-HHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            432223568999953  455788877744 5444431111 11112  234444445555544422  233334444445


Q ss_pred             HHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC-------------CHHHHHHHHhcCCcceeecCCCCc
Q 021783          186 AEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-------------SLALSKHVVETTKYFSITVSFGSV  252 (307)
Q Consensus       186 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~gi~v~~g~~  252 (307)
                      .+.|++...  ...++..            ..+.++++.+.+.             +.+....+.+.+.++|+.+.....
T Consensus       381 ~~~L~~l~~--~~g~~~~------------~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~  446 (474)
T PLN02482        381 IQGILEAGK--KAGHEMC------------GGYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQF  446 (474)
T ss_pred             HHHHHHHHH--hcCCCEE------------EcccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCC
Confidence            544443210  0000000            0011335444441             122345677778888987754221


Q ss_pred             cceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          253 KSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       253 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      ..                         +++.+.+..+|+|+.++.|.++++++
T Consensus       447 ~~-------------------------~~psl~ht~~dId~~l~al~~~l~~~  474 (474)
T PLN02482        447 EA-------------------------GFTSLAHTEEDIDFTIAAAERVLARI  474 (474)
T ss_pred             CC-------------------------CcCCCCCCHHHHHHHHHHHHHHHHhC
Confidence            00                         11223333478899999998888653

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.11  E-value=2.4e-09  Score=95.28  Aligned_cols=206  Identities=16%  Similarity=0.109  Sum_probs=120.9

Q ss_pred             hHHHHhhcC---CCceEEEEeCCCCCccccc----cHHHHHHHHHHcCCEEEEeCccC-CCCcC---CccCC--CccEEE
Q 021783           50 LDEVASAIG---PWTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLEL--GADIVM  116 (307)
Q Consensus        50 ~~~l~~~l~---~~~~~v~~~~~~n~tG~~~----~~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~~~--~~d~~~  116 (307)
                      ++++++.+.   .++.+++++..+...|...    .+++|.++|++||+++|+||+++ .|...   ....+  ..|+++
T Consensus       205 l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~  284 (431)
T TIGR03251       205 LRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVA  284 (431)
T ss_pred             HHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEE
Confidence            344555553   6789999999888888875    39999999999999999999987 33321   11122  467775


Q ss_pred             eccccccccCCCceeEEEEEcChhHHHHHHH-H----HHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHH
Q 021783          117 HSATKFIAGHSDVMAGVLAVKGERLAKELYF-L----QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFL  189 (307)
Q Consensus       117 ~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l  189 (307)
                        ++|.+  + .  +|++..+ + +.+.... .    ......+..+.....+.+.++.+..  ..++..+..+.+.+.|
T Consensus       285 --~gK~~--~-~--~g~~~~~-~-i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L  355 (431)
T TIGR03251       285 --FGKKT--Q-V--CGIMAGR-R-VDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARL  355 (431)
T ss_pred             --ecccC--c-c--ceEEecc-h-HHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence              78876  2 1  5666544 2 2111110 0    0111122344555565555654422  1223333334444444


Q ss_pred             hcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcH
Q 021783          190 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV  269 (307)
Q Consensus       190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~  269 (307)
                      ++..   . .++      .+.   ...++.|.++.+.+.+.+....+.+.+..+||.+....                  
T Consensus       356 ~~l~---~-~~~------~~i---~~vrg~G~~~~i~~~~~~~~~~~~~~l~~~Gvl~~~~g------------------  404 (431)
T TIGR03251       356 HELA---A-EFP------HLV---SNPRGRGLMCAFDLPSTADRDEVIRQLYREGVLLLGCG------------------  404 (431)
T ss_pred             HHHH---H-hCc------cce---ecccccceeEEEEeCCHHHHHHHHHHHHhCCeEEecCC------------------
Confidence            3210   0 001      000   01145678888888766556778888888899764322                  


Q ss_pred             HHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 021783          270 EVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  304 (307)
Q Consensus       270 ~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  304 (307)
                               .+.+|+++++...++.++.+.+++++
T Consensus       405 ---------~~~lr~~P~l~~t~~eid~~l~~l~~  430 (431)
T TIGR03251       405 ---------ERSIRFRPPLTVTREEIDAAIDAIRR  430 (431)
T ss_pred             ---------CCeEEEECCccCCHHHHHHHHHHHHh
Confidence                     13399999987777777777777654

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK07046 aminotransferase; Validated

Probab=99.11  E-value=2e-09  Score=96.12  Aligned_cols=99  Identities=23%  Similarity=0.268  Sum_probs=73.0

Q ss_pred             EEEecCCChHHHHhhcC-CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC----CCCcCCccCCCc
Q 021783           42 VKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM----SPVLSRPLELGA  112 (307)
Q Consensus        42 ~~~v~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~----~~~~~~~~~~~~  112 (307)
                      +..++.+|++++++.+. .+..+|+++......|.+.+    ++++.++|++||+++|.||++.    .|..........
T Consensus       199 ~~~~~~nd~~~l~~~l~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~~~~gv~P  278 (453)
T PRK07046        199 TRVVEFNDLAALEAALADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYTRAHGLEP  278 (453)
T ss_pred             eEeeCCCCHHHHHHHhCCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchhHHhCCCc
Confidence            45566779999999986 57889999988877787765    8999999999999999999985    232211111235


Q ss_pred             cEEEeccccccccCCCceeEEEEEcChhHHHHH
Q 021783          113 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  145 (307)
Q Consensus       113 d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~  145 (307)
                      |++  ++.|.++|  |..+|.+.++++ +.+.+
T Consensus       279 Di~--t~gK~lgg--G~Pi~av~g~~~-i~~~~  306 (453)
T PRK07046        279 DFL--VVGKPIAG--GVPCAVYGFSAE-LAERA  306 (453)
T ss_pred             cce--eehhhhcC--CCcceeeeehHH-HHHHH
Confidence            665  48999964  566898888855 44444

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.10  E-value=7.7e-10  Score=99.09  Aligned_cols=210  Identities=13%  Similarity=0.135  Sum_probs=125.6

Q ss_pred             hHHHHhhcC---CCceEEEEeC-CCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CC---CcCCccCCC--ccEE
Q 021783           50 LDEVASAIG---PWTKLVWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SP---VLSRPLELG--ADIV  115 (307)
Q Consensus        50 ~~~l~~~l~---~~~~~v~~~~-~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~---~~~~~~~~~--~d~~  115 (307)
                      ++++++.+.   +++.+|+++. ++...|...+    +++|.++|++||+++|.||++. .|   .......+|  .|++
T Consensus       201 l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv  280 (466)
T PRK07030        201 FAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFL  280 (466)
T ss_pred             HHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCCCEE
Confidence            455666664   5788999998 5776777654    9999999999999999999985 33   222223344  4666


Q ss_pred             EeccccccccCCC-ceeEEEEEcChhHHHHHHHH-------HHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHH
Q 021783          116 MHSATKFIAGHSD-VMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE  187 (307)
Q Consensus       116 ~~s~~K~~~g~~g-~~~G~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~  187 (307)
                      +  +.|.++|  | +.+|.++++++ +.+.+..-       .........+..+..+.+.++.+++  +++.++++.+.+
T Consensus       281 ~--~gKgl~g--G~~Pi~av~~~~e-i~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~--~~l~~~~~~~G~  353 (466)
T PRK07030        281 C--LSKALTG--GYLPLAAVLTTDT-VYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQ--DNVIENNRALAR  353 (466)
T ss_pred             e--eehhccC--CcccceEEEecHH-HHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHH
Confidence            5  6998853  4 34888888755 44433210       1112223455666666666665533  334555555555


Q ss_pred             HHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH-----------HHHHHHHhcCCcceeecCCCCcccee
Q 021783          188 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----------ALSKHVVETTKYFSITVSFGSVKSLI  256 (307)
Q Consensus       188 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~gi~v~~g~~~~~~  256 (307)
                      ++.+.-.  .     +..+|.+    ...++.|.++.+.+...           .....+.+.+..+|+.+....     
T Consensus       354 ~l~~~L~--~-----l~~~~~v----~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-----  417 (466)
T PRK07030        354 RMAEATA--H-----LADHPHV----AEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPLG-----  417 (466)
T ss_pred             HHHHHHH--H-----HhcCCCE----EEeEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEecC-----
Confidence            5443210  0     0011110    11256677888877311           113467777777888664311     


Q ss_pred             ecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          257 SMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       257 ~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                                             +.+|+.+.+    ++++..++.|.++|+++
T Consensus       418 -----------------------~~i~~~Ppl~it~~eid~~~~~l~~al~~~  447 (466)
T PRK07030        418 -----------------------SVVYFLPPYVITPEQIDFLAEVASEGIDIA  447 (466)
T ss_pred             -----------------------CEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence                                   237777654    78888888888888754

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.09  E-value=6.8e-10  Score=99.43  Aligned_cols=209  Identities=16%  Similarity=0.154  Sum_probs=124.9

Q ss_pred             hHHHHhhcC---CCceEEEEeC-CCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CC---CcCCccCCC--ccEE
Q 021783           50 LDEVASAIG---PWTKLVWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SP---VLSRPLELG--ADIV  115 (307)
Q Consensus        50 ~~~l~~~l~---~~~~~v~~~~-~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~---~~~~~~~~~--~d~~  115 (307)
                      ++.+++.+.   .++.+|+++. .+...|...+    ++++.++|++||+++|.||++. .|   .+.....+|  .|++
T Consensus       223 ~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv  302 (472)
T PRK08742        223 ADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLL  302 (472)
T ss_pred             HHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEE
Confidence            456666663   5788999997 4776787653    9999999999999999999985 33   222233345  4555


Q ss_pred             EeccccccccCCC-ceeEEEEEcChhHHHHHHHH---H---HhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHH
Q 021783          116 MHSATKFIAGHSD-VMAGVLAVKGERLAKELYFL---Q---NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF  188 (307)
Q Consensus       116 ~~s~~K~~~g~~g-~~~G~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~  188 (307)
                      +  ++|.++|  | +..|.++++++ +.+.+...   .   ........+..+..+.+.++.+..  +++.++++++.++
T Consensus       303 ~--~gKgl~g--G~~Plaav~~~~e-i~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~--~~l~~~~~~~g~~  375 (472)
T PRK08742        303 C--LSKGLTG--GFLPLSAVLATQQ-LYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFAD--DDVIARNQPTAAR  375 (472)
T ss_pred             E--EcccccC--CCCCcceeeccHH-HHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHH--CCHHHHHHHHHHH
Confidence            5  7999853  3 23777777754 44433211   0   111222345666666666654432  3445555555555


Q ss_pred             HhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH-----------HHHHHHHhcCCcceeecCCCCccceee
Q 021783          189 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----------ALSKHVVETTKYFSITVSFGSVKSLIS  257 (307)
Q Consensus       189 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~gi~v~~g~~~~~~~  257 (307)
                      ++....       .+..++.+    ...++.|.++.+.+...           .....+.+.+.++|+.+....      
T Consensus       376 l~~~~~-------~~~~~~~i----~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g------  438 (472)
T PRK08742        376 MTQLAA-------QIGEHPHV----ADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPLG------  438 (472)
T ss_pred             HHHHHH-------HHhcCCCe----eeEeccceEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEecC------
Confidence            543210       01111110    12266788888877311           113556777777888664311      


Q ss_pred             cccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          258 MPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       258 ~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                                            +.+|+.+.+    +++++.++.|.++|++
T Consensus       439 ----------------------~vi~~~PpL~it~~ei~~~~~~l~~~l~~  467 (472)
T PRK08742        439 ----------------------DVLYWMPPYCVDEAQLALLADTTRHAIDE  467 (472)
T ss_pred             ----------------------CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                                  238888865    7888888888888864

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.07  E-value=6.2e-10  Score=99.57  Aligned_cols=208  Identities=16%  Similarity=0.207  Sum_probs=120.5

Q ss_pred             HHHHhhcC--CCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCccC-CCCcC---CccCCC--ccEEEecc
Q 021783           51 DEVASAIG--PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLELG--ADIVMHSA  119 (307)
Q Consensus        51 ~~l~~~l~--~~~~~v~~~~~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~~~~--~d~~~~s~  119 (307)
                      +++++.+.  +++.+|+++.+++..+...|   +++|.++|++||+++|.||++. .|..-   ....+|  .|+++  +
T Consensus       218 ~~l~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~--~  295 (459)
T PRK06082        218 DYLEYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILC--I  295 (459)
T ss_pred             HHHHHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCCEEE--e
Confidence            45677664  46789999988776333444   9999999999999999999986 22221   112233  57776  8


Q ss_pred             ccccccCCC-ceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCcc
Q 021783          120 TKFIAGHSD-VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVK  196 (307)
Q Consensus       120 ~K~~~g~~g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~  196 (307)
                      +|.+++  | +.+|.++++++ +................+..+..+.+.++.+..  ..++..+..+.+.+.|++...  
T Consensus       296 gKgl~g--G~~P~~av~~~~~-i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~--  370 (459)
T PRK06082        296 GKGLGG--GLVPIAAMITKDK-YNTAAQISLGHYTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQFMRERLLEMKA--  370 (459)
T ss_pred             cccccC--CCCcceEEEEcHH-HHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh--
Confidence            999964  3 34788888754 333221100112233445566666666655432  123333333334444432110  


Q ss_pred             EEecCCCCCCCchHHHhhhccCCCceEEEEeCC--------HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCc
Q 021783          197 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIP  268 (307)
Q Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~  268 (307)
                        .++.+.          ..++.|.++.+.+..        .+....+...+.++|+.+...                  
T Consensus       371 --~~~~i~----------~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~------------------  420 (459)
T PRK06082        371 --KYPLIG----------DVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVS------------------  420 (459)
T ss_pred             --hCCCee----------eeeeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEec------------------
Confidence              001111          125677888887731        122456667777778765431                  


Q ss_pred             HHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          269 VEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       269 ~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                               ..+.+|+++.+    +++++.++.|.+++.+
T Consensus       421 ---------~~~~i~~~Ppl~it~~eid~~~~~l~~~l~~  451 (459)
T PRK06082        421 ---------QGNVIQLSPPLIITREELTQALAILEEAIAK  451 (459)
T ss_pred             ---------CCCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence                     12348888754    7888888888888764

>PRK06148 hypothetical protein; Provisional

Probab=99.07  E-value=1.1e-09  Score=106.46  Aligned_cols=207  Identities=19%  Similarity=0.181  Sum_probs=125.1

Q ss_pred             CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCc----CCccCCCccEEEeccccccccCCCc
Q 021783           59 PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVL----SRPLELGADIVMHSATKFIAGHSDV  129 (307)
Q Consensus        59 ~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~----~~~~~~~~d~~~~s~~K~~~g~~g~  129 (307)
                      .++.+|+++......|.+.+    ++++.++|++||+++|.||++. .|..    .....+|+.--+.++.|.+++  |.
T Consensus       783 ~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~gK~lgg--G~  860 (1013)
T PRK06148        783 RGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGN--GH  860 (1013)
T ss_pred             CceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeeecccccC--Cc
Confidence            46889999988887888775    9999999999999999999984 3322    222334544344557999964  55


Q ss_pred             eeEEEEEcChhHHHHHHHHH-HhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCc
Q 021783          130 MAGVLAVKGERLAKELYFLQ-NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG  208 (307)
Q Consensus       130 ~~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~  208 (307)
                      .+|.++++++ +.+.+.... ........+..+..+.+.++.+..  +++.+++..+.++|++.-.  .+    .+.+|.
T Consensus       861 Plgav~~~~e-i~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~--e~l~~~~~~~G~~l~~~L~--~l----~~~~~~  931 (1013)
T PRK06148        861 PMGAVVTTRE-IADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIED--EDLQRNALEIGNYLLAGLR--EL----QDRFDI  931 (1013)
T ss_pred             ceEEEEEcHH-HHhhccCCCccccCCCCCHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHH--HH----HHhCCC
Confidence            6899888844 544332111 112223445666666666655432  2344555544444432210  00    000110


Q ss_pred             hHHHhhhccCCCceEEEEeCC--------HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCC
Q 021783          209 HELHYSQAKGAGSVLSFLTGS--------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTED  280 (307)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  280 (307)
                      +    ...++.|.++.+.+..        .+....+.+.+..+||.+...+.                         ..+
T Consensus       932 i----~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~-------------------------~~~  982 (1013)
T PRK06148        932 I----GDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGP-------------------------HDN  982 (1013)
T ss_pred             c----eEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccCC-------------------------CCC
Confidence            0    0125567788887731        23356778888888997754221                         134


Q ss_pred             eEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          281 LVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       281 ~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                      .+|+.+.+    +++|+.++.|.++|+++
T Consensus       983 vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148        983 VLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred             EEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence            58888875    78888888888887653

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=2e-09  Score=89.87  Aligned_cols=125  Identities=17%  Similarity=0.222  Sum_probs=98.1

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCC-------------ceEEEEeCCCC
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW-------------TKLVWVESPTN   71 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~-------------~~~v~~~~~~n   71 (307)
                      .++.++.+.||-|.+......+..    ..++...-.+.++.++|.+++++.+..+             -+.|+++....
T Consensus       169 S~ipafsKrGDIi~~de~~nfaIq----~GlqlSRS~i~~Fkhndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~  244 (467)
T KOG1358|consen  169 SAIPAFSKRGDIIFVDEAVNFAIQ----KGLQLSRSTISYFKHNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYA  244 (467)
T ss_pred             hcchhhhccCcEEEEehhhhHHHH----HHHhhhhheeEEecCCCHHHHHHhccCcchhhhhccccccceEEEEEEeecc
Confidence            467788999999998887665655    5566677889999999999998887622             24566777777


Q ss_pred             CccccccHHHHHHHHHHcCCEEEEeCccCCCCcCC----------ccCCCccEEEeccccccccCCCceeEEEEEc
Q 021783           72 PRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR----------PLELGADIVMHSATKFIAGHSDVMAGVLAVK  137 (307)
Q Consensus        72 ~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~----------~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~  137 (307)
                      ++|.++|+.+|.++..+|...+|.|+.++.|....          ......|++++|+.-.+++  +  +|+.+++
T Consensus       245 N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas--~--GgFc~G~  316 (467)
T KOG1358|consen  245 NTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALAS--G--GGFCAGK  316 (467)
T ss_pred             CCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccc--c--Cceeecc
Confidence            89999999999999999999999999998665431          1122579999999998853  3  6888885

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=99.06  E-value=5.5e-09  Score=84.36  Aligned_cols=142  Identities=24%  Similarity=0.339  Sum_probs=103.5

Q ss_pred             HH-HHHHHhcCCCCeEE-EcCCCCcchHHHHh------hhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeC-
Q 021783            3 AL-AAVTHLLGTGEEIV-AGDDLYGGTDRLLS------RVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVES-   68 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vl-v~~~~~~~~~~~~~------~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~-   68 (307)
                      |+ .++..+++|||+.+ +..-.|......+.      .-++.+|+...-+|+.     |.+.+...++++||+|.++- 
T Consensus        95 AI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~~v~Lt~~gkiD~~~v~~~i~~~tkli~IQRS  174 (416)
T COG4100          95 AIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGIKYKAVPLTADGKIDIQAVKTAISDRTKLIGIQRS  174 (416)
T ss_pred             HHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHHHhCcceeecccccCCcccHHHHHHhcCccceEEEEEec
Confidence            45 56667899999998 44444544432221      2234567888888874     89999999999999999872 


Q ss_pred             C---CCCccccccHHHHHHHHHHc--CCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHH
Q 021783           69 P---TNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  142 (307)
Q Consensus        69 ~---~n~tG~~~~~~~l~~~~~~~--~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~  142 (307)
                      -   .-|+=.+.+++++..+.++.  |+++++|++|+...-. .+-+-|+|++.+|+-|.-+|.--.-+|++.++.+.+.
T Consensus       175 ~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve  254 (416)
T COG4100         175 KGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVE  254 (416)
T ss_pred             cCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccCccccchhhhccceeeCCCCceeeccceeechHHHHH
Confidence            2   22444444688888888887  6999999999987754 7778899999999999876543334899999977665


Q ss_pred             HH
Q 021783          143 KE  144 (307)
Q Consensus       143 ~~  144 (307)
                      ..
T Consensus       255 ~~  256 (416)
T COG4100         255 AA  256 (416)
T ss_pred             hh
Confidence            44

>PRK06917 hypothetical protein; Provisional

Probab=99.06  E-value=1.6e-09  Score=96.73  Aligned_cols=216  Identities=13%  Similarity=0.136  Sum_probs=122.1

Q ss_pred             hHHHHhhcC----CCceEEEEeCCCCCc-ccccc----HHHHHHHHHHcCCEEEEeCccC-CCCc---CCccCCC--ccE
Q 021783           50 LDEVASAIG----PWTKLVWVESPTNPR-QQICD----IRKIAEMAHAHGALLLVDNSIM-SPVL---SRPLELG--ADI  114 (307)
Q Consensus        50 ~~~l~~~l~----~~~~~v~~~~~~n~t-G~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~---~~~~~~~--~d~  114 (307)
                      ++.+++.++    +++.+|+++...... |.+.+    +++|.++|++||+++|.||++. .|..   .....++  .|+
T Consensus       185 ~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi  264 (447)
T PRK06917        185 ATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDI  264 (447)
T ss_pred             HHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCE
Confidence            356666664    368899999876533 45543    9999999999999999999985 2221   1112334  465


Q ss_pred             EEeccccccccCCCc-eeEEEEEcChhHHHHHHHHH----HhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHH
Q 021783          115 VMHSATKFIAGHSDV-MAGVLAVKGERLAKELYFLQ----NAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAE  187 (307)
Q Consensus       115 ~~~s~~K~~~g~~g~-~~G~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~  187 (307)
                        .+++|.+++  |. .+|.++++++ +.+.+....    ........+.....+.+.++.+..  ..++..+.-+.+.+
T Consensus       265 --~~~gK~l~~--G~~Pi~a~~~~~~-i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~  339 (447)
T PRK06917        265 --MTLGKGLGA--GYTPIAATVVSDR-VMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIK  339 (447)
T ss_pred             --EEeeehhcc--CCcceEEEEEcHH-HHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence              457999964  32 3788888754 444433211    111223445566666666655432  12222333333333


Q ss_pred             HHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC-----------HHHHHHHHhcCCcceeecCCCCcccee
Q 021783          188 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-----------LALSKHVVETTKYFSITVSFGSVKSLI  256 (307)
Q Consensus       188 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~v~~g~~~~~~  256 (307)
                      .|++...    .++.+.          ..++.|.++.+.+..           .+....+.+.+.++|+.+.......  
T Consensus       340 ~L~~l~~----~~~~i~----------~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~--  403 (447)
T PRK06917        340 GLQKVQQ----QSTIIG----------DVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQ--  403 (447)
T ss_pred             HHHHHHh----cCCCEE----------EEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEeccccc--
Confidence            3332210    011111          125567788887721           1235677778888888775421100  


Q ss_pred             ecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          257 SMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       257 ~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                                        .|...+.+|+++.+    +|++..++.|.+++++
T Consensus       404 ------------------~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~  437 (447)
T PRK06917        404 ------------------DGKEGDAVIIAPPMTITYSELDELLSIFAKSVEE  437 (447)
T ss_pred             ------------------CCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence                              11123569998874    7788888888877754

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.06  E-value=5.2e-10  Score=96.96  Aligned_cols=217  Identities=15%  Similarity=0.167  Sum_probs=129.1

Q ss_pred             hHHHHhhcC----CCceEEEEeCCCCC-cccccc----HHHHHHHHHHcCCEEEEeCccC----CCCcCCccCCCccEEE
Q 021783           50 LDEVASAIG----PWTKLVWVESPTNP-RQQICD----IRKIAEMAHAHGALLLVDNSIM----SPVLSRPLELGADIVM  116 (307)
Q Consensus        50 ~~~l~~~l~----~~~~~v~~~~~~n~-tG~~~~----~~~l~~~~~~~~~~li~D~a~~----~~~~~~~~~~~~d~~~  116 (307)
                      .++|++.+.    .+..+++++....- .|...+    ++++.++|++||+++|.||+-.    .|.+.....+|+.--+
T Consensus       200 a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi  279 (449)
T COG0161         200 ADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDI  279 (449)
T ss_pred             HHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCe
Confidence            345666654    56788899887666 777764    9999999999999999999963    3444445555654444


Q ss_pred             eccccccccCCCceeEEEEEcChhHHHHHHHH-----HHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhc
Q 021783          117 HSATKFIAGHSDVMAGVLAVKGERLAKELYFL-----QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLAS  191 (307)
Q Consensus       117 ~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~  191 (307)
                      -+++|.+.+ .-+..|.++++++ +.+.+..-     .....++-.+..+..++++++-++.  +.+.++.+.+..+|.+
T Consensus       280 ~~~aKGLT~-GY~Pl~a~l~~~~-I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~--e~l~~~~~~~~~~l~~  355 (449)
T COG0161         280 LCLAKGLTG-GYLPLSAVLTSDR-IYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEE--EDLLERVAEIGAYLQA  355 (449)
T ss_pred             eeecccccc-cchhhHhHhhhHH-HHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHH
Confidence            448898842 2333555666644 44443322     1222345566888888888876543  3344444444444332


Q ss_pred             CCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH---------HHHHHHHhcCCcceeecCCCCccceeeccccc
Q 021783          192 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL---------ALSKHVVETTKYFSITVSFGSVKSLISMPCFM  262 (307)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~  262 (307)
                      .-.      +.+..+|.+    .+.++.|.+..+.+...         .....+...+.++|+.+++.+..-...+|   
T Consensus       356 ~L~------~~l~~~p~V----gdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~g~~i~~~PP---  422 (449)
T COG0161         356 GLQ------AALADHPLV----GDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPLGDVIYLMPP---  422 (449)
T ss_pred             HHH------HhcccCCcE----EEeeccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeecCCEEEEcCC---
Confidence            210      001111111    01245566666766221         22667788888899999976432223344   


Q ss_pred             CCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 021783          263 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  304 (307)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  304 (307)
                                           +.+..++++++++.+.++++.
T Consensus       423 ---------------------liit~~eid~l~~~l~~al~~  443 (449)
T COG0161         423 ---------------------LIITREEIDELVDALREALDE  443 (449)
T ss_pred             ---------------------ccCCHHHHHHHHHHHHHHHHH
Confidence                                 223347899999999998874

>PRK07480 putative aminotransferase; Validated

Probab=99.04  E-value=2.4e-09  Score=95.78  Aligned_cols=207  Identities=14%  Similarity=0.087  Sum_probs=121.9

Q ss_pred             HHHHhhcC----CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCc---CCccCCCccEEEec
Q 021783           51 DEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVL---SRPLELGADIVMHS  118 (307)
Q Consensus        51 ~~l~~~l~----~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~---~~~~~~~~d~~~~s  118 (307)
                      +.+++.+.    .++.+|+++..+...|...+    +++|.++|++||+++|.||++. .|..   .....+|+.--+.+
T Consensus       206 ~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~  285 (456)
T PRK07480        206 RQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMT  285 (456)
T ss_pred             HHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCCeee
Confidence            55555442    57889999988887788765    9999999999999999999984 3322   22233454333455


Q ss_pred             cccccccCCCc-eeEEEEEcChhHHHHHHH----HHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHH-----HHHHHH
Q 021783          119 ATKFIAGHSDV-MAGVLAVKGERLAKELYF----LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNA-----QKIAEF  188 (307)
Q Consensus       119 ~~K~~~g~~g~-~~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~l~~~  188 (307)
                      ++|.++|  |. .+|.++++++ +.+.+..    .......+..+..+..+.+.++.++.  +.+.+++     +.+.+.
T Consensus       286 ~gK~l~g--G~~Pi~av~~~~~-i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~--~~l~~~~~~~~g~~l~~~  360 (456)
T PRK07480        286 IAKGLTS--GYIPMGAVGVGDR-VAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRD--EGIVERVRDDTGPYLQKR  360 (456)
T ss_pred             eehhhcc--CCccceEEEEcHH-HHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHH
Confidence            8999864  32 3677777744 5444421    11112234445666676666665532  2233333     334444


Q ss_pred             HhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH-----------HHHHHHHhcCCcceeecCCCCccceee
Q 021783          189 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----------ALSKHVVETTKYFSITVSFGSVKSLIS  257 (307)
Q Consensus       189 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~gi~v~~g~~~~~~~  257 (307)
                      +++..   .  ++.+.          ..++.|.++.+.+...           .....+...+.++|+.+....      
T Consensus       361 l~~l~---~--~~~i~----------~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~------  419 (456)
T PRK07480        361 LRELA---D--HPLVG----------EVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAVG------  419 (456)
T ss_pred             HHHhh---c--CCCee----------eEEeecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeecC------
Confidence            43211   0  11111          1255677888877211           112455666777788664311      


Q ss_pred             cccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          258 MPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       258 ~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                                            +.+|+++.+    +++|+.++.|.++|+++
T Consensus       420 ----------------------~~l~~~Ppl~it~~eid~~~~~l~~al~~~  449 (456)
T PRK07480        420 ----------------------DRMIISPPLVITHAEIDELVEKARKALDAT  449 (456)
T ss_pred             ----------------------CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence                                  237888865    78888888888887653

>PRK07483 hypothetical protein; Provisional

Probab=99.04  E-value=1.3e-09  Score=97.24  Aligned_cols=217  Identities=17%  Similarity=0.170  Sum_probs=123.6

Q ss_pred             HHHHhhcC----CCceEEEEeCCCC-Ccccccc----HHHHHHHHHHcCCEEEEeCccC-CCCc---CCccCCC--ccEE
Q 021783           51 DEVASAIG----PWTKLVWVESPTN-PRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVL---SRPLELG--ADIV  115 (307)
Q Consensus        51 ~~l~~~l~----~~~~~v~~~~~~n-~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~---~~~~~~~--~d~~  115 (307)
                      +++++.+.    +++.+|+++..+. ..|...+    +++|.++|++||+++|.||++. .|..   .....+|  .|++
T Consensus       186 ~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv  265 (443)
T PRK07483        186 DELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLV  265 (443)
T ss_pred             HHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCee
Confidence            55666553    5688999998775 3466654    9999999999999999999985 3222   2222334  4555


Q ss_pred             EeccccccccCCCc-eeEEEEEcChhHHHHHHHH----HHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHh
Q 021783          116 MHSATKFIAGHSDV-MAGVLAVKGERLAKELYFL----QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLA  190 (307)
Q Consensus       116 ~~s~~K~~~g~~g~-~~G~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~  190 (307)
                      +  ++|.+++  |. .+|.++++++ +.+.+...    .........+.....+.+.++.++.  +.+.++++.+.++|+
T Consensus       266 ~--~gK~l~g--G~~Pi~av~~~~~-i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~--~~l~~~~~~~g~~l~  338 (443)
T PRK07483        266 T--IAKGLGA--GYQPIGAVLASDR-IYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAE--DGLLANVRARGEQLR  338 (443)
T ss_pred             e--ehhhhcc--CccccEEEEEcHH-HHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHH
Confidence            5  7999854  43 4788888755 44433311    1111223345556666666654432  234444544444443


Q ss_pred             cCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC-----------HHHHHHHHhcCCcceeecCCCCccceeecc
Q 021783          191 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-----------LALSKHVVETTKYFSITVSFGSVKSLISMP  259 (307)
Q Consensus       191 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p  259 (307)
                      +.-.  .    ....+|.+    ...++.|.++.+.+..           .+....+.+.+.++|+.+.......     
T Consensus       339 ~~L~--~----l~~~~~~i----~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~-----  403 (443)
T PRK07483        339 ARLR--E----RLGQHPHV----GDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTI-----  403 (443)
T ss_pred             HHHH--H----HHhcCCCe----eeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccc-----
Confidence            2210  0    00001100    0125667788877621           1224567777888888765321000     


Q ss_pred             cccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          260 CFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                                     .+...+.+|+.+.+    +++|+.++.|.++|++
T Consensus       404 ---------------~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~  437 (443)
T PRK07483        404 ---------------DGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDA  437 (443)
T ss_pred             ---------------cCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                           00113459988865    7888888888888764

>PRK07036 hypothetical protein; Provisional

Probab=99.02  E-value=1.8e-09  Score=96.85  Aligned_cols=202  Identities=12%  Similarity=0.128  Sum_probs=120.0

Q ss_pred             CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCc---CCcc-CCCccEEEeccccccccCCC-
Q 021783           59 PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVL---SRPL-ELGADIVMHSATKFIAGHSD-  128 (307)
Q Consensus        59 ~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~---~~~~-~~~~d~~~~s~~K~~~g~~g-  128 (307)
                      +++.+|+++..+...|...+    +++|.++|++||+++|.||++. .|..   .... .+|+.--+.+++|.+++  | 
T Consensus       219 ~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt~gK~l~g--G~  296 (466)
T PRK07036        219 DNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPDIITFAKGLTS--GY  296 (466)
T ss_pred             CceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEEEcccccc--Cc
Confidence            56889999998888888876    9999999999999999999984 3332   2222 23433333457999854  3 


Q ss_pred             ceeEEEEEcChhHHHHHHHH-------HHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecC
Q 021783          129 VMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  201 (307)
Q Consensus       129 ~~~G~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  201 (307)
                      +.+|.++++++ +.+.+...       .........+..+..+.+.++.+..  +++.+++..+.++|++.-.  .    
T Consensus       297 ~Pi~av~~~~~-i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~--~~l~~~~~~~g~~l~~~L~--~----  367 (466)
T PRK07036        297 QPLGAVIISER-LLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMER--EGLCEHVREVGPYFEERLA--S----  367 (466)
T ss_pred             cccEEEEEcHH-HHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHH--H----
Confidence            23788888755 54444311       1111223445666666666665532  2344444444444432210  0    


Q ss_pred             CCCCCCchHHHhhhccCCCceEEEEeCC-----------HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHH
Q 021783          202 GLPEHPGHELHYSQAKGAGSVLSFLTGS-----------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE  270 (307)
Q Consensus       202 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~  270 (307)
                       +..+|.+    ...++.|.++.+.+..           .+....+...+..+|+.+....                   
T Consensus       368 -l~~~~~v----~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~-------------------  423 (466)
T PRK07036        368 -LRELPLV----GDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPLE-------------------  423 (466)
T ss_pred             -hccCCCE----EEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeecC-------------------
Confidence             1111110    1225677888887732           1124567777777888664311                   


Q ss_pred             HHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          271 VRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       271 ~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                               +.+|+++.+    +++++.++.|.++|++
T Consensus       424 ---------~~~~l~Ppl~it~~~id~~~~~l~~al~~  452 (466)
T PRK07036        424 ---------HLCVLSPPLIITRAQIDEIVAILRAAIEE  452 (466)
T ss_pred             ---------CEEEEeCCCcCCHHHHHHHHHHHHHHHHH
Confidence                     226777654    7888888888887754

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.02  E-value=1.4e-09  Score=97.38  Aligned_cols=203  Identities=18%  Similarity=0.205  Sum_probs=116.5

Q ss_pred             CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-C---CCcCCccCCC--ccEEEeccccccccCCC
Q 021783           59 PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-S---PVLSRPLELG--ADIVMHSATKFIAGHSD  128 (307)
Q Consensus        59 ~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~---~~~~~~~~~~--~d~~~~s~~K~~~g~~g  128 (307)
                      +++.+|+++..+...|...+    ++++.++|++||+++|.||++. .   |.......+|  .|+++  ++|.+++  |
T Consensus       224 ~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt--~gK~l~g--G  299 (459)
T PRK06931        224 RKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIV--MSKAVGG--G  299 (459)
T ss_pred             CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEE--ecccccC--C
Confidence            35789999988877787764    9999999999999999999985 3   2222222344  45555  7999854  5


Q ss_pred             ceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCc
Q 021783          129 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG  208 (307)
Q Consensus       129 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~  208 (307)
                      +.+|.+..+++ . +.+............+..+..+.+.++.+..  +.+.++++.+.++|.+.-.  .+    .+.+|.
T Consensus       300 ~Pi~av~~~~~-~-~~~~~~~~~~T~~gnpla~aaala~L~~l~~--~~l~~~~~~~G~~l~~~L~--~l----~~~~~~  369 (459)
T PRK06931        300 LPLAVLGIKKE-F-DAWQPGGHTGTFRGNQLAMATGLTTLKILKE--ENLAQNAAERGEWLKAQLA--EL----QKRYPC  369 (459)
T ss_pred             cceeeeeeHHH-H-hhccCCCCCCCCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHH--HH----HHhCCC
Confidence            66888777643 3 3221111111223445566666666654422  2333444444443332100  00    000110


Q ss_pred             hHHHhhhccCCCceEEEEeCC--------------HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHh
Q 021783          209 HELHYSQAKGAGSVLSFLTGS--------------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA  274 (307)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~  274 (307)
                          ....++.|.++.+.+..              .+....+...+..+|+.+..+..                      
T Consensus       370 ----i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~----------------------  423 (459)
T PRK06931        370 ----IGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERGGR----------------------  423 (459)
T ss_pred             ----eEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecCC----------------------
Confidence                01225567788887731              12345667777778887653221                      


Q ss_pred             cCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          275 RGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       275 ~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                         ..+.+|+.+.+    +++++.++.|.++|++
T Consensus       424 ---~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~  454 (459)
T PRK06931        424 ---NGNVVRLLPPLLITQAECEEFIDRFEQALLA  454 (459)
T ss_pred             ---CCCEEEEECCCCcCHHHHHHHHHHHHHHHHH
Confidence               12448888875    6777778888777754

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=99.01  E-value=2.3e-08  Score=83.74  Aligned_cols=179  Identities=17%  Similarity=0.153  Sum_probs=117.9

Q ss_pred             CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC----CCCcCCccCCCccEEEeccccccccCCCce
Q 021783           59 PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM----SPVLSRPLELGADIVMHSATKFIAGHSDVM  130 (307)
Q Consensus        59 ~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~----~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~  130 (307)
                      ....+++.++.+.-.|.+.+    +++..++|+++|.++|.||++.    .|.+......++.--+-++.|.++.  |..
T Consensus       211 ~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGn--G~P  288 (442)
T KOG1404|consen  211 ETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGN--GFP  288 (442)
T ss_pred             CceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHHHHHhhccC--CCc
Confidence            35667778888887777753    9999999999999999999985    4555555666777777789999953  466


Q ss_pred             eEEEEEcChhHHHHHHHHH-HhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCch
Q 021783          131 AGVLAVKGERLAKELYFLQ-NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGH  209 (307)
Q Consensus       131 ~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~  209 (307)
                      .|.+++.++ +.+.+.... .+....-.+..+....+.++-+++  +++++++..+..+|.+.-....-..+.+-     
T Consensus       289 l~AVvtt~E-Ia~v~~~~~~~fnTyggnP~a~avg~aVL~Vike--e~LqE~aa~vG~yl~~~l~~l~d~h~iIG-----  360 (442)
T KOG1404|consen  289 LGAVVTTPE-IADVLNQKSSHFNTYGGNPVACAVGLAVLKVIKE--ENLQENAAEVGSYLLEKLAALKDKHPIIG-----  360 (442)
T ss_pred             ceeeecCHH-HHHHHHhccccccccCCCchhHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHhhcCCcee-----
Confidence            888888744 655555443 444455556677777777765543  66777777666665532100000011111     


Q ss_pred             HHHhhhccCCCceEEEEe-C--------CHHHHHHHHhcCCcceeecCCCCc
Q 021783          210 ELHYSQAKGAGSVLSFLT-G--------SLALSKHVVETTKYFSITVSFGSV  252 (307)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~l~~~gi~v~~g~~  252 (307)
                           +.|+.|-++.+.+ +        .......+.+++++.|+.+.-|+.
T Consensus       361 -----dVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i  407 (442)
T KOG1404|consen  361 -----DVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGI  407 (442)
T ss_pred             -----ecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeecccc
Confidence                 1155667777765 1        223467788899999999977665

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.01  E-value=1.8e-09  Score=96.73  Aligned_cols=209  Identities=11%  Similarity=0.159  Sum_probs=121.7

Q ss_pred             hHHHHhhcC---CCceEEEEeC-CCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCcC---CccCCC--ccEE
Q 021783           50 LDEVASAIG---PWTKLVWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLELG--ADIV  115 (307)
Q Consensus        50 ~~~l~~~l~---~~~~~v~~~~-~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~~~~--~d~~  115 (307)
                      ++.+++.+.   +++.+|+++. ++...|.+.+    ++++.++|++||+++|.||++. .|..-   ....+|  .|++
T Consensus       210 ~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv  289 (460)
T PRK06916        210 LEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIM  289 (460)
T ss_pred             HHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCCCee
Confidence            455666664   5789999998 5777787753    9999999999999999999984 22221   222234  5665


Q ss_pred             EeccccccccCCC-ceeEEEEEcChhHHHHHHH-H------HHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHH
Q 021783          116 MHSATKFIAGHSD-VMAGVLAVKGERLAKELYF-L------QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE  187 (307)
Q Consensus       116 ~~s~~K~~~g~~g-~~~G~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~  187 (307)
                        +++|.++|  | +.+|.++++++ +.+.+.. .      .........+.....+.+.++.+..  +.+.++++.+.+
T Consensus       290 --~~gK~l~g--G~~Pi~av~~~~e-i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~--~~l~~~~~~~g~  362 (460)
T PRK06916        290 --TAGKGLTG--GYLPIAITVTTDE-IYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEK--TNLIEQVARKTE  362 (460)
T ss_pred             --eeehhhhc--CccccceeeecHH-HHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHH
Confidence              47998853  4 34788888755 4443321 0      1111222345556666666654432  223344444444


Q ss_pred             HHhcCC-CccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH-----------HHHHHHHhcCCcceeecCCCCccce
Q 021783          188 FLASHP-RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----------ALSKHVVETTKYFSITVSFGSVKSL  255 (307)
Q Consensus       188 ~l~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~gi~v~~g~~~~~  255 (307)
                      ++.+.- .+..  ++.+.          ..++.|.++.+.+...           .....+...+..+|+.+....    
T Consensus       363 ~l~~~l~~l~~--~~~v~----------~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g----  426 (460)
T PRK06916        363 YVATQLEDLFA--LKHVG----------DIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPLG----  426 (460)
T ss_pred             HHHHHHHHhhc--CCCeE----------EeecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEecC----
Confidence            333210 0000  11111          1255677777776311           113567777888888765321    


Q ss_pred             eecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          256 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       256 ~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                                              +.+|+.+.+    ++++..++.|.++|+++
T Consensus       427 ------------------------~~l~~~Ppl~it~~~id~~~~~l~~~l~~~  456 (460)
T PRK06916        427 ------------------------NTIVFMPPLASTIDELDEMLRILYKAISDV  456 (460)
T ss_pred             ------------------------CEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence                                    127777654    78888888888888754

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=98.94  E-value=5.5e-08  Score=86.33  Aligned_cols=188  Identities=21%  Similarity=0.183  Sum_probs=124.4

Q ss_pred             cHHHHHHHh-cCCC----CeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcC---CCceEEEEeC
Q 021783            2 AALAAVTHL-LGTG----EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG---PWTKLVWVES   68 (307)
Q Consensus         2 aal~~~~~~-~~~g----d~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~---~~~~~v~~~~   68 (307)
                      |++.++.+. ..+|    +..+++...|+...    .-+.-.|.+++.|..+     |..+|++...   ++-.+++++.
T Consensus       613 aGL~~IRaY~~~kge~hRnvClIPvSAHGTNP----ASA~MagmkvvpV~~~~~G~id~~dLk~kaekh~~~Laa~MvTY  688 (1001)
T KOG2040|consen  613 AGLRVIRAYLESKGEGHRNVCLIPVSAHGTNP----ASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTY  688 (1001)
T ss_pred             hhHHHHHHHHHhccCCcceeEEEeecccCCCh----hhHHhcCCEEEEeeccCCCCccHHHHHHHHHHhhhhhheeEEec
Confidence            455566663 3344    35788888998877    5677789999998874     7777776664   5678999999


Q ss_pred             CCCCccccc-cHHHHHHHHHHcCCEEEEeCccCCCC--cCCccCCCccEEEeccccccccCCCc---eeEEEEEcChhHH
Q 021783           69 PTNPRQQIC-DIRKIAEMAHAHGALLLVDNSIMSPV--LSRPLELGADIVMHSATKFIAGHSDV---MAGVLAVKGERLA  142 (307)
Q Consensus        69 ~~n~tG~~~-~~~~l~~~~~~~~~~li~D~a~~~~~--~~~~~~~~~d~~~~s~~K~~~g~~g~---~~G~~~~~~~~~~  142 (307)
                      |++ .|... .+++++++.|+||--+..|+|....-  +-.+.++|.|+.--.+||+|+-|.|-   -+|=+.+++- +.
T Consensus       689 PST-~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~H-La  766 (1001)
T KOG2040|consen  689 PST-HGVFEEGIDDICDIIHEHGGQVYLDGANMNAQVGLCRPGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LA  766 (1001)
T ss_pred             ccc-cccccccHHHHHHHHHhcCCEEEecCCCccceecccCCccccccceeecccceeeecCCCCCCCCCccchhhh-cc
Confidence            987 47765 59999999999999999999975332  23677889999999999999665550   0233333321 11


Q ss_pred             HHHHH-----H--------------HHhcC-CCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCc
Q 021783          143 KELYF-----L--------------QNAEG-SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRV  195 (307)
Q Consensus       143 ~~~~~-----~--------------~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~  195 (307)
                      ..+..     .              .++.. ..++...++.-+.+...+....+--.-|+.++.++|+.+-++
T Consensus       767 pfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~hYki  839 (1001)
T KOG2040|consen  767 PFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLESHYKI  839 (1001)
T ss_pred             ccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhccce
Confidence            10000     0              00000 112223455555566666655566667888899999887643

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=98.93  E-value=4e-08  Score=85.16  Aligned_cols=185  Identities=16%  Similarity=0.064  Sum_probs=102.8

Q ss_pred             HHHHHhcC-CCCeEEEcCC----CCcchHHHHhhhcccCCcEEEEec----------C-----CChHHHHhhcCC----C
Q 021783            5 AAVTHLLG-TGEEIVAGDD----LYGGTDRLLSRVTPKTGVVVKRVN----------T-----CDLDEVASAIGP----W   60 (307)
Q Consensus         5 ~~~~~~~~-~gd~Vlv~~~----~~~~~~~~~~~~~~~~g~~~~~v~----------~-----~d~~~l~~~l~~----~   60 (307)
                      .++..+++ |||++.+...    .|...+......+...|+.++.++          .     .|++++++.|.+    +
T Consensus       104 Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~  183 (467)
T TIGR02617       104 IYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNN  183 (467)
T ss_pred             HHHHhhcccccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCC
Confidence            34445667 7887775443    121111111134566787776642          1     289999999973    2


Q ss_pred             ceEEEEeCCCC-Ccccccc---HHHHHHHHHHcCCEEEEeCccCC-----------CCcC-Ccc------CCCccEEEec
Q 021783           61 TKLVWVESPTN-PRQQICD---IRKIAEMAHAHGALLLVDNSIMS-----------PVLS-RPL------ELGADIVMHS  118 (307)
Q Consensus        61 ~~~v~~~~~~n-~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~-----------~~~~-~~~------~~~~d~~~~s  118 (307)
                      .-.+.++-.+| --|...+   ++++.++|++||+.++.|+|--.           +... .+.      ...+|.++.|
T Consensus       184 i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~s  263 (467)
T TIGR02617       184 VPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMS  263 (467)
T ss_pred             ceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEE
Confidence            33333332233 3466664   88999999999999999997311           1111 111      1368999999


Q ss_pred             cccccccCCCceeEEEEEcCh---hHHHHHHHHH-HhcC----CCCChhhHHHHhhccccH--HHHHHHHHHHHHHHHHH
Q 021783          119 ATKFIAGHSDVMAGVLAVKGE---RLAKELYFLQ-NAEG----SGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEF  188 (307)
Q Consensus       119 ~~K~~~g~~g~~~G~~~~~~~---~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~  188 (307)
                      ++|.++.|-   +|+++++++   .+.+..+... ...|    .+++.-....+..+|+..  ....+......+.|.+.
T Consensus       264 lsKglgApv---Gg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~~~  340 (467)
T TIGR02617       264 AKKDAMVPM---GGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQVQYLVNG  340 (467)
T ss_pred             cCCCCCCcc---cceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHH
Confidence            999997664   689999988   4433322211 1111    123332222222344321  22334445556677777


Q ss_pred             HhcC
Q 021783          189 LASH  192 (307)
Q Consensus       189 l~~~  192 (307)
                      |++.
T Consensus       341 L~~~  344 (467)
T TIGR02617       341 LEEI  344 (467)
T ss_pred             HHhC
Confidence            7655

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=98.85  E-value=1.1e-08  Score=87.24  Aligned_cols=203  Identities=16%  Similarity=0.213  Sum_probs=116.9

Q ss_pred             EEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCC-----CceEEEEeCC-CCCccccccHHHHHHH
Q 021783           17 IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP-----WTKLVWVESP-TNPRQQICDIRKIAEM   85 (307)
Q Consensus        17 Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~-----~~~~v~~~~~-~n~tG~~~~~~~l~~~   85 (307)
                      +-.++..|.+..    .++...|++++.++.+     +.+.|.+++..     -+-.+++.+. ++.+...-++.+|..+
T Consensus       185 ~Y~SDqahssve----ka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~V  260 (511)
T KOG0628|consen  185 AYCSDQAHSSVE----KACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPV  260 (511)
T ss_pred             EEecCcccchHH----HhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHhcch
Confidence            457888887777    6778888999988875     56778777762     1222333232 2222233469999999


Q ss_pred             HHHcCCEEEEeCccCCCCc--CCcc--CC---CccEEEeccccccccCCCceeEEEEEcChh------HHHHHHHHHHh-
Q 021783           86 AHAHGALLLVDNSIMSPVL--SRPL--EL---GADIVMHSATKFIAGHSDVMAGVLAVKGER------LAKELYFLQNA-  151 (307)
Q Consensus        86 ~~~~~~~li~D~a~~~~~~--~~~~--~~---~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~------~~~~~~~~~~~-  151 (307)
                      |+++|+|+++|+||+...+  +...  -.   .+|-+-+..|||+.-.-.  +..++.++..      ..+.+..-... 
T Consensus       261 c~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfD--Cs~lWvkd~~~~~~~~~vdp~yL~h~~~  338 (511)
T KOG0628|consen  261 CREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFD--CSPLWVKDGTKLSRAFNVDPLYLKHAYQ  338 (511)
T ss_pred             hhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeee--eecceeecCceeeeeeecChHhhcchhh
Confidence            9999999999999985443  2111  11   368899999998754333  5555555441      11111111111 


Q ss_pred             ------------cCCCCChhhHHHHhh--ccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhcc
Q 021783          152 ------------EGSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  217 (307)
Q Consensus       152 ------------~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~  217 (307)
                                  .+-..-..-.|+.++  +.+.+..+++++.+.++...+.+.+-+..              ++..+   
T Consensus       339 ~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~F--------------E~~~~---  401 (511)
T KOG0628|consen  339 GSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRF--------------EIVNK---  401 (511)
T ss_pred             ccCCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcc--------------eeecc---
Confidence                        111222334454443  34556666666666666666655544322              11111   


Q ss_pred             CCCceEEEEeCC-HHHHHHHHhcCCc
Q 021783          218 GAGSVLSFLTGS-LALSKHVVETTKY  242 (307)
Q Consensus       218 ~~~~~~~~~~~~-~~~~~~~~~~l~~  242 (307)
                      ..-++++|++.+ .+.-+.+++++..
T Consensus       402 ~~lgLvcFRlk~~N~~ne~Ll~~in~  427 (511)
T KOG0628|consen  402 RILGLVCFRLKGDNEINEALLNRLNS  427 (511)
T ss_pred             cccceeEEeecCCcHHHHHHHHHHHh
Confidence            125688998843 3345666766644

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=98.81  E-value=9.2e-08  Score=77.70  Aligned_cols=132  Identities=12%  Similarity=0.140  Sum_probs=101.3

Q ss_pred             HHHHhcCCC---CeEEEcCCCCcchHHHHhhhcccCCcEEEEe----cC------CChHHHHhhcC---CCceEEEEeCC
Q 021783            6 AVTHLLGTG---EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV----NT------CDLDEVASAIG---PWTKLVWVESP   69 (307)
Q Consensus         6 ~~~~~~~~g---d~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v----~~------~d~~~l~~~l~---~~~~~v~~~~~   69 (307)
                      ++..+.+|-   -+|+...-.|++-..++...++..|..+...    ..      ...+++...|.   +..++|.++.+
T Consensus       144 Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkngDeiA~v~fSGv  223 (465)
T KOG3846|consen  144 LLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKNGDEIALVCFSGV  223 (465)
T ss_pred             HHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccccccchhHHHHHHHHHhcCCeEEEEEeecc
Confidence            334566664   4799999999998888888889999764322    11      13355555554   45778888899


Q ss_pred             CCCccccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEc
Q 021783           70 TNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVK  137 (307)
Q Consensus        70 ~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~  137 (307)
                      +..||...|+.+|-..-+..|+++=.|-||+.|..+ ..-+||+|+.+....|+++..+|-++|..+-.
T Consensus       224 qyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCSYKYlnaGaGgIgGlFvHe  292 (465)
T KOG3846|consen  224 QYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWGVDFACWCSYKYLNAGAGGIGGLFVHE  292 (465)
T ss_pred             eeecccccchhhhhhcccCCCcEechhhhhhhcCCceEEeecCCceEEEeeecccccCCCccceeeeeh
Confidence            999999999999996666669999999999999887 66678999999999999977677667765543

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=98.79  E-value=5.1e-08  Score=82.47  Aligned_cols=172  Identities=15%  Similarity=0.145  Sum_probs=119.5

Q ss_pred             EEcCCCCcchHHHHhhhcccCC---cEEEEecCC-----ChHHHHhhcC---CC---ceEEEEeCCCCCccccccHHHHH
Q 021783           18 VAGDDLYGGTDRLLSRVTPKTG---VVVKRVNTC-----DLDEVASAIG---PW---TKLVWVESPTNPRQQICDIRKIA   83 (307)
Q Consensus        18 lv~~~~~~~~~~~~~~~~~~~g---~~~~~v~~~-----d~~~l~~~l~---~~---~~~v~~~~~~n~tG~~~~~~~l~   83 (307)
                      .+|+.+|.+..    .++.-.|   -+++.|+.+     ++++|++.|.   .+   +-.|-.+..++.-|..-|++.|+
T Consensus       201 FtSeesHYSi~----kaAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~ia  276 (510)
T KOG0629|consen  201 FTSEESHYSIK----KAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIA  276 (510)
T ss_pred             EecccchhhHH----HHHHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHH
Confidence            36777888777    4455555   567777765     7899998885   22   45566666777788888999999


Q ss_pred             HHHHHcCCEEEEeCccCCCCcCCccC-------CCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH--------
Q 021783           84 EMAHAHGALLLVDNSIMSPVLSRPLE-------LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--------  148 (307)
Q Consensus        84 ~~~~~~~~~li~D~a~~~~~~~~~~~-------~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~--------  148 (307)
                      ++|++|++|+++|+|.+.|.+-+...       ..++.+..+.||+++.|  +.++....+.+-+......+        
T Consensus       277 diC~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gap--lqCsa~l~r~~gll~~Cn~~~A~YLFq~  354 (510)
T KOG0629|consen  277 DICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAP--LQCSAFLTREEGLLQRCNQMSAIYLFQQ  354 (510)
T ss_pred             HHHHhcCEEEEeecccccccccChhhHhhccCccccCceeecHHHhhcCc--chhhHHHHHHHHHHHhhcccchhhhhcc
Confidence            99999999999999998766432111       14789999999999643  45777777755432221111        


Q ss_pred             -------------HHhcCCCCChhhHHHHhhc--cccHHHHHHHHHHHHHHHHHHHhcCCCc
Q 021783          149 -------------QNAEGSGLAPFDCWICLRG--VKTMALRVEKQQDNAQKIAEFLASHPRV  195 (307)
Q Consensus       149 -------------~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~l~~~l~~~~~~  195 (307)
                                   .-+.|-....+-.|+.+.+  -+.++...++..++++.+.++++++...
T Consensus       355 dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~  416 (510)
T KOG0629|consen  355 DKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGF  416 (510)
T ss_pred             CceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccc
Confidence                         0012223444567777654  5677888888899999999999988643

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.79  E-value=2.6e-07  Score=87.40  Aligned_cols=178  Identities=12%  Similarity=0.103  Sum_probs=102.4

Q ss_pred             CCceEEEEeCC-CCCcccccc----HHHHHHHHHHcCCEEEEeCccC----CCCcCCccCCCccEEEeccccccccCCC-
Q 021783           59 PWTKLVWVESP-TNPRQQICD----IRKIAEMAHAHGALLLVDNSIM----SPVLSRPLELGADIVMHSATKFIAGHSD-  128 (307)
Q Consensus        59 ~~~~~v~~~~~-~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~----~~~~~~~~~~~~d~~~~s~~K~~~g~~g-  128 (307)
                      +++.+++++.. +...|.+.+    ++++.++|++||+++|.||++.    .|.+.....+|+.--+.++.|.++|  | 
T Consensus       583 ~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~~gKgLtg--G~  660 (817)
T PLN02974        583 GHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDIACYAKLLTG--GL  660 (817)
T ss_pred             CCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCCCCEEeecccccC--CC
Confidence            46789999984 676687764    9999999999999999999985    3333333445554444448999853  4 


Q ss_pred             ceeEEEEEcChhHHHHHHH------HHHhcCCCCChhhHHHHhhccccHHHH--HHHHHHHHHHHHHHHhcCCCccEEec
Q 021783          129 VMAGVLAVKGERLAKELYF------LQNAEGSGLAPFDCWICLRGVKTMALR--VEKQQDNAQKIAEFLASHPRVKKVNY  200 (307)
Q Consensus       129 ~~~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~  200 (307)
                      +.+|.++++++ +.+.+..      .......+..+..+..+.+.++.++..  .+++.++...+.+.+++.-      .
T Consensus       661 ~Plaa~l~~~~-I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l------~  733 (817)
T PLN02974        661 VPLAATLATEE-VFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEEL------V  733 (817)
T ss_pred             CccEEEEEcHH-HHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH------H
Confidence            34788888744 5554431      112223345566777777776655331  2234444444433332110      0


Q ss_pred             CCCCCCCchHHHhhhccCCCceEEEEeCCH--------HHHHHHHhcCC-cceeecCC
Q 021783          201 AGLPEHPGHELHYSQAKGAGSVLSFLTGSL--------ALSKHVVETTK-YFSITVSF  249 (307)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~-~~gi~v~~  249 (307)
                      ..+..+|.+    ...++.|.++.+.+...        ..+..+.+.+. .+|+.+++
T Consensus       734 ~~l~~~p~V----~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~  787 (817)
T PLN02974        734 RAISSLPNV----ERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARP  787 (817)
T ss_pred             HHHhhCCCe----eEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEe
Confidence            000011110    01245677778877321        22456666777 78887764

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=98.78  E-value=1.2e-07  Score=84.55  Aligned_cols=95  Identities=18%  Similarity=0.161  Sum_probs=65.4

Q ss_pred             EEEecCCChHHHHhhcC---CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCccCCCCcCC---cc-CCCccE
Q 021783           42 VKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR---PL-ELGADI  114 (307)
Q Consensus        42 ~~~v~~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~---~~-~~~~d~  114 (307)
                      +..++.+|++++++.+.   .++++|+++......+..-.+++|.++|++||+++|+||++. |....   .. .++...
T Consensus       166 ~~~~~~~d~~~l~~~l~~~~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~t-G~~~~~~g~~~~~gv~P  244 (431)
T PRK06209        166 TVTFRYNDIASLEALFEDHPGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMIT-GFRWHMRGAQKLYGIVP  244 (431)
T ss_pred             ccccCCCCHHHHHHHHHhCCCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccc-cCCcCcchhhHHhCCCc
Confidence            34456679999998885   457788888765543333349999999999999999999983 33211   11 134333


Q ss_pred             EEeccccccccCCCceeEEEEEcCh
Q 021783          115 VMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus       115 ~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      -+.+++|.+++  |..+|+++++++
T Consensus       245 Di~t~gK~lgg--G~p~~av~~~~~  267 (431)
T PRK06209        245 DLSCFGKALGN--GFAVSALAGKRE  267 (431)
T ss_pred             ceeeehhhhcC--CcccEEEEEHHH
Confidence            34668999964  445888888754

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=98.78  E-value=1.6e-06  Score=70.80  Aligned_cols=250  Identities=16%  Similarity=0.199  Sum_probs=143.1

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhcccCC-cEEEEecC-------CChHHHHhhcC--CCceEEEEe-CCCCCcccccc---
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTPKTG-VVVKRVNT-------CDLDEVASAIG--PWTKLVWVE-SPTNPRQQICD---   78 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~~~g-~~~~~v~~-------~d~~~l~~~l~--~~~~~v~~~-~~~n~tG~~~~---   78 (307)
                      +..+|-+++|+|....    ..++..| .++...+.       .|++.+...+.  +...++++. ..+||||.-..   
T Consensus       124 ~~~~VY~SnPTW~nH~----~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQ  199 (410)
T KOG1412|consen  124 NKNTVYVSNPTWENHH----AIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESAPEGSIIILHACAHNPTGMDPTREQ  199 (410)
T ss_pred             ccceeEecCCchhHHH----HHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhCCCCcEEeeeccccCCCCCCCCHHH
Confidence            4678999999998888    4556667 33333332       27888877776  333445554 35999998875   


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCc--CCccC--------CCc-cEEEeccccccccCCCceeEEEEE--cChhHHH--
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVL--SRPLE--------LGA-DIVMHSATKFIAGHSDVMAGVLAV--KGERLAK--  143 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~--~~~~~--------~~~-d~~~~s~~K~~~g~~g~~~G~~~~--~~~~~~~--  143 (307)
                      -.+|++..++.+...+.|-+|-....  ++.+.        .|. -+++.||+|.+ |.-+-|.|.+..  +++....  
T Consensus       200 W~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNf-GlYneRvGnltvv~~n~a~i~~v  278 (410)
T KOG1412|consen  200 WKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNF-GLYNERVGNLTVVVNNPAVIAGV  278 (410)
T ss_pred             HHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhc-ccccccccceEEEecChhHHHHH
Confidence            55677777888999999999842221  12222        233 58999999999 677778885543  4444332  


Q ss_pred             --HHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCc
Q 021783          144 --ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS  221 (307)
Q Consensus       144 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (307)
                        .+....+...+.++...+.....-|.. .++.+++.+..+.+..++++.+.-..-....|. .|+  .| ..-.++.+
T Consensus       279 ~SQl~lviR~~~SNPPAyGArIV~kvL~t-P~lre~W~~sik~MssRI~~MR~aLrd~L~aL~-TPG--tW-DHI~~QiG  353 (410)
T KOG1412|consen  279 KSQLTLVIRSNWSNPPAYGARIVHKVLST-PELREQWIQSIKTMSSRIKKMRTALRDHLVALK-TPG--TW-DHITQQIG  353 (410)
T ss_pred             HHHHHHHHhhccCCCcchhhHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC--cH-HHHHhhcc
Confidence              233333444445555555554444433 334455555555555554433200000000111 111  01 11122467


Q ss_pred             eEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec---cCChHHHHHHH
Q 021783          222 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG---IEDVNDLISDL  298 (307)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~---~~~~~~~i~~l  298 (307)
                      +|++.=-.....+.+.+..+..  ..+                              +  =||+++   ..++|++.+.+
T Consensus       354 MFSyTGLtp~qV~~li~~h~vy--Ll~------------------------------~--GRInisGLN~~NveyVAkAI  399 (410)
T KOG1412|consen  354 MFSYTGLTPAQVDHLIENHKVY--LLS------------------------------D--GRINISGLNMKNVEYVAKAI  399 (410)
T ss_pred             ceeecCCCHHHHHHHHHhceEE--Eec------------------------------C--CcEeeeccccccHHHHHHHH
Confidence            7777655555567776655432  111                              1  356663   37899999999


Q ss_pred             HHHHhcCC
Q 021783          299 DKALRTGP  306 (307)
Q Consensus       299 ~~~l~~~~  306 (307)
                      .++.+.+.
T Consensus       400 de~Vr~~~  407 (410)
T KOG1412|consen  400 DETVRAIK  407 (410)
T ss_pred             HHHHHhhc
Confidence            88887653

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=98.75  E-value=1.3e-07  Score=78.16  Aligned_cols=206  Identities=15%  Similarity=0.176  Sum_probs=119.6

Q ss_pred             ChHHHHhhcC------CCceEEEEeCCCCCccccc----cHHHHHHHHHHcCCEEEEeCccCC----CCcCCccCC----
Q 021783           49 DLDEVASAIG------PWTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIMS----PVLSRPLEL----  110 (307)
Q Consensus        49 d~~~l~~~l~------~~~~~v~~~~~~n~tG~~~----~~~~l~~~~~~~~~~li~D~a~~~----~~~~~~~~~----  110 (307)
                      .++++++.|.      ....+++++..++..|.-.    -.++|.+++++||+.+|+|++|..    |.+-.-..|    
T Consensus       254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~  333 (484)
T KOG1405|consen  254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDS  333 (484)
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCC
Confidence            3566666664      2456888888888777654    299999999999999999999963    222222222    


Q ss_pred             CccEEEeccccccccCCCceeEEEEEcChhHHH-HHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHH
Q 021783          111 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFL  189 (307)
Q Consensus       111 ~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l  189 (307)
                      ..|+++  |||-+.  .   +|+... ++..-+ .-+....+.|..   .-..+....++.+  ..+.+.++.....+.|
T Consensus       334 PpD~vT--FSKK~q--~---gGffh~-~~frpn~pYrifNTWmGdP---~k~lll~~vv~~I--~~~~Ll~n~~~vG~~l  400 (484)
T KOG1405|consen  334 PPDVVT--FSKKFQ--T---GGFFHD-EEFRPNEPYRIFNTWMGDP---SKNLLLEEVVQEI--KREDLLNNVAHVGKAL  400 (484)
T ss_pred             Ccccee--hhhhhh--c---CccccC-cccCCCchHHHhhhhcCCh---HHHHHHHHHHHHH--hHHHHHHHHHHHHHHH
Confidence            356665  788774  2   565443 232222 333344444421   1122222222222  2244455555554444


Q ss_pred             hcCCCccEEecCC-CCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCc
Q 021783          190 ASHPRVKKVNYAG-LPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIP  268 (307)
Q Consensus       190 ~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~  268 (307)
                      ...-.-....+++ +.+          .+++|.++.|.+++.+..+.++..++.+|+.+.-.                  
T Consensus       401 ~~gL~~Lq~~~p~~~~~----------~RGrGTF~a~d~ps~~~Rdk~i~~~~~nGv~~GGC------------------  452 (484)
T KOG1405|consen  401 LKGLLELQAKYPGKINN----------LRGRGTFIAWDCPSGSIRDKLILIARLNGVNLGGC------------------  452 (484)
T ss_pred             HHHHHHHHHhCchhhhc----------ccccceEEEEeCCChHHHHHHHHHHHHcCceeccc------------------
Confidence            3211000111221 222          26789999999988887899999999888755322                  


Q ss_pred             HHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          269 VEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       269 ~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                               ++..||+-+++    .+.+-+++.|.+.|+.
T Consensus       453 ---------g~~siRfRPsLvf~~~Ha~i~l~~~~k~l~~  483 (484)
T KOG1405|consen  453 ---------GDKSIRFRPSLVFRKHHADIFLDIFDKILAG  483 (484)
T ss_pred             ---------ccceeeeccceeehhhhHHHHHHHHHHHhcc
Confidence                     23337777765    5677777888777764

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=98.58  E-value=2.6e-06  Score=70.45  Aligned_cols=132  Identities=19%  Similarity=0.233  Sum_probs=90.3

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcC--CCceEEEEe-CCCCCcc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG--PWTKLVWVE-SPTNPRQ   74 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~--~~~~~v~~~-~~~n~tG   74 (307)
                      +.+++..-++..|.+|+|+|....    ......|+.+.++..-       |.+.+.+.+.  +.-..|++- ..+||||
T Consensus       137 a~Fl~~f~~~~~I~ip~PTWgNh~----~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilLhaCaHNPTG  212 (427)
T KOG1411|consen  137 AEFLARFYPSRDIYIPDPTWGNHK----NIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILLHACAHNPTG  212 (427)
T ss_pred             HHHHHhhccccceeecCCcccccC----ccccccCcceeeeeeccccccccchHHHHHHHhcCCCCcEEEeehhhcCCCC
Confidence            344555567999999999999887    6677888887666542       5555555554  222333333 5699999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCC---CCcC-Cc------cCCC-ccEEEeccccccccCCCceeEEE--EEcC
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMS---PVLS-RP------LELG-ADIVMHSATKFIAGHSDVMAGVL--AVKG  138 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~---~~~~-~~------~~~~-~d~~~~s~~K~~~g~~g~~~G~~--~~~~  138 (307)
                      +-..   -++|.++.++.+.+-+.|-+|-.   |-.. +.      .+.| ..+++.|+.|.+ |.-|-|.|.+  ++++
T Consensus       213 vDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNM-GLYgERvGa~svvc~~  291 (427)
T KOG1411|consen  213 VDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNM-GLYGERVGALSVVCKD  291 (427)
T ss_pred             CCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhc-chhhhccceeEEEecC
Confidence            8874   66888889999999999999853   3221 11      1112 458899999999 6667788855  5555


Q ss_pred             hhH
Q 021783          139 ERL  141 (307)
Q Consensus       139 ~~~  141 (307)
                      .+.
T Consensus       292 ad~  294 (427)
T KOG1411|consen  292 ADE  294 (427)
T ss_pred             HHH
Confidence            544

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=98.43  E-value=1e-06  Score=76.13  Aligned_cols=155  Identities=19%  Similarity=0.142  Sum_probs=91.6

Q ss_pred             CCCeEEEcCCCCcchHHH-Hh--------hhcccCCcEEEEecCCChHH----------HHhh----cCCCceEEEEeCC
Q 021783           13 TGEEIVAGDDLYGGTDRL-LS--------RVTPKTGVVVKRVNTCDLDE----------VASA----IGPWTKLVWVESP   69 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~-~~--------~~~~~~g~~~~~v~~~d~~~----------l~~~----l~~~~~~v~~~~~   69 (307)
                      ...+|+....+|.+.... +.        .......-.+..+|..++..          +++.    -.+++.+|+++..
T Consensus       107 ~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi  186 (339)
T PF00202_consen  107 GRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEPI  186 (339)
T ss_dssp             TTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESS
T ss_pred             CCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEecc
Confidence            356788777777654321 11        11112223456677776655          2222    2367899999988


Q ss_pred             CCCcccccc----HHHHHHHHHHcCCEEEEeCccC-C---CCcCCccCC--CccEEEeccccccccCCCceeEEEEEcCh
Q 021783           70 TNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-S---PVLSRPLEL--GADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        70 ~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~---~~~~~~~~~--~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      +...|...+    +++|.++|++||+++|.||++. .   |.+.....+  ..|+++.  +|.+++  |+..|.++++++
T Consensus       187 ~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~--gK~l~g--G~p~sav~~~~~  262 (339)
T PF00202_consen  187 QGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTF--GKGLGG--GLPISAVLGSEE  262 (339)
T ss_dssp             BTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEE--EGGGGT--TSSEEEEEEEHH
T ss_pred             ccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCccccc--ccchhh--hhhcccccccch
Confidence            887787763    8999999999999999999986 2   332222223  4678775  599964  466889998854


Q ss_pred             hHHHHHHHHHHhcCCCCChhhHHHHhhccccHH
Q 021783          140 RLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA  172 (307)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  172 (307)
                       +.+.+............+..+..+...++.++
T Consensus       263 -i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~  294 (339)
T PF00202_consen  263 -IMEAFQPGSHGSTFGGNPLSCAAALATLEILE  294 (339)
T ss_dssp             -HHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHH
T ss_pred             -hhccccccccccccccchHhhhhhhhHHHhhc
Confidence             43333211211222334455666666555443

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.37  E-value=7.5e-06  Score=69.43  Aligned_cols=126  Identities=15%  Similarity=0.147  Sum_probs=84.0

Q ss_pred             EEEecCCChHHHHhhcCC---CceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccCC-CCcC---CccCC
Q 021783           42 VKRVNTCDLDEVASAIGP---WTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS---RPLEL  110 (307)
Q Consensus        42 ~~~v~~~d~~~l~~~l~~---~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~~-~~~~---~~~~~  110 (307)
                      ++....+|..++++.++.   ...+|+++..+-..|....    +..|...|+++|+++|.||++.. +...   .-..+
T Consensus       185 v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~  264 (433)
T KOG1401|consen  185 VVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYF  264 (433)
T ss_pred             eeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHh
Confidence            344445689999999973   4689999988887777652    88999999999999999999852 3222   22233


Q ss_pred             CccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHH---hcCCCCChhhHHHHhhcccc
Q 021783          111 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN---AEGSGLAPFDCWICLRGVKT  170 (307)
Q Consensus       111 ~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~  170 (307)
                      ++.--+.++.|.++|  |+.+|+..++++ +.+.+.....   .....-.++.+......++.
T Consensus       265 ~~~PDI~t~aK~L~g--GlPigA~~v~~k-V~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~  324 (433)
T KOG1401|consen  265 GVTPDITTVAKPLGG--GLPIGATGVRDK-VAEMISPGDHLYHGGTFSGNPLACSAGIKVLDE  324 (433)
T ss_pred             CcCCcceeehhhccC--CceeEEEeehHH-HHhhcCCCCccccCcccCCChhhhhHHHHHHHH
Confidence            555556679999953  677999999855 5554432222   22223334555555555443

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=98.28  E-value=1.6e-05  Score=71.12  Aligned_cols=125  Identities=23%  Similarity=0.340  Sum_probs=91.3

Q ss_pred             HHHHH-hcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHHHH
Q 021783            5 AAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA   83 (307)
Q Consensus         5 ~~~~~-~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~   83 (307)
                      +..++ ...++.+.++.+.+|+.+...++..++.+|++++..+   +++...- .++...++++.|.. .|.+.|..++.
T Consensus       195 Am~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~~---~~~~~~s-~~~v~gvlvQYP~t-~G~i~d~~el~  269 (1001)
T KOG2040|consen  195 AMALCNRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVSD---IKEADYS-SKDVSGVLVQYPDT-EGSVLDFDELV  269 (1001)
T ss_pred             HHHHHHhhcccceEEecCCCCcchhhhhhccccccceeEEecC---HHHhhcc-ccceeEEEEEcCCC-CCcccCHHHHH
Confidence            44444 3456778999999999999888888888888866544   3333221 24578899999987 59999999999


Q ss_pred             HHHHHcCCEEEEeCc-cCCCCcCCccCCCccEEEeccccc-----cccCCCceeEEEEEc
Q 021783           84 EMAHAHGALLLVDNS-IMSPVLSRPLELGADIVMHSATKF-----IAGHSDVMAGVLAVK  137 (307)
Q Consensus        84 ~~~~~~~~~li~D~a-~~~~~~~~~~~~~~d~~~~s~~K~-----~~g~~g~~~G~~~~~  137 (307)
                      +.+++.+..+++-.- -+.-.+..+.++|+|+.++|.+.+     ++||.   .||+.++
T Consensus       270 ~~a~~~~s~vv~atDLLaLtiLrpPgefGaDIavGSsQRFGVPlGYGGPH---AaFfAv~  326 (1001)
T KOG2040|consen  270 ELAHANGSLVVMATDLLALTILRPPGEFGADIAVGSSQRFGVPLGYGGPH---AAFFAVS  326 (1001)
T ss_pred             HHhhccCceEEEeehhhHHHccCChhhcCceeeeccccccCccccCCCch---HHHHHHH
Confidence            999999988765332 233445688899999999999884     44443   4555544

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=98.02  E-value=0.00022  Score=59.76  Aligned_cols=122  Identities=19%  Similarity=0.165  Sum_probs=80.4

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC---------------ChHHHHhhcC----CCceEEEEe-CCCCC
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---------------DLDEVASAIG----PWTKLVWVE-SPTNP   72 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---------------d~~~l~~~l~----~~~~~v~~~-~~~n~   72 (307)
                      ||.+..+++..|+.+..   .-.+.+|+.++-++.+               |++.|++.|+    .+.-.|+++ ..|+-
T Consensus       122 pg~~~~~~sN~~FdTTr---~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~Nsa  198 (471)
T COG3033         122 PGSKMVAFSNYHFDTTR---GHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSA  198 (471)
T ss_pred             CCccccccccceecchh---HHHHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEecccc
Confidence            45555556666665543   3456778887776652               7889998887    345555555 44555


Q ss_pred             ccccc---cHHHHHHHHHHcCCEEEEeCccC-CCCc------CCccC-----------CCccEEEeccccccccCCCcee
Q 021783           73 RQQIC---DIRKIAEMAHAHGALLLVDNSIM-SPVL------SRPLE-----------LGADIVMHSATKFIAGHSDVMA  131 (307)
Q Consensus        73 tG~~~---~~~~l~~~~~~~~~~li~D~a~~-~~~~------~~~~~-----------~~~d~~~~s~~K~~~g~~g~~~  131 (307)
                      .|...   +++++.++|++|+++++.|.+-- .-..      +...+           .-+|-++.|.-|--..+   ++
T Consensus       199 gGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvn---mG  275 (471)
T COG3033         199 GGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVN---MG  275 (471)
T ss_pred             CCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccceec---cc
Confidence            56665   58999999999999999999842 1110      01111           13789999999954233   37


Q ss_pred             EEEEEcChh
Q 021783          132 GVLAVKGER  140 (307)
Q Consensus       132 G~~~~~~~~  140 (307)
                      |+++.+++.
T Consensus       276 Gfl~~~D~~  284 (471)
T COG3033         276 GFLCFKDDS  284 (471)
T ss_pred             cEEEecCcc
Confidence            999999874

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=97.83  E-value=0.00021  Score=60.12  Aligned_cols=198  Identities=16%  Similarity=0.100  Sum_probs=118.5

Q ss_pred             CCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEc
Q 021783           59 PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVK  137 (307)
Q Consensus        59 ~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~  137 (307)
                      ++..-|..|+-.+.+|+-.+  +.-.+..  +.+++.|........+ +..  ..|++.++.+|.+ ||.|  .++++.+
T Consensus       143 ~~~ayv~~~~NeTi~Gv~v~--~~p~~~~--~~~~v~D~SS~ilsr~iDvs--k~dviyagaQKnl-GpaG--ltvvIvr  213 (365)
T COG1932         143 DNDAYVHFCWNETISGVEVP--ELPDIGS--DGLLVADASSAILSRPIDVS--KYDVIYAGAQKNL-GPAG--LTVVIVR  213 (365)
T ss_pred             CCccEEEEecCCcccceEcc--CCCCCCC--CceEEEecccHHhcCCCChh--HcceEEEehhhcc-Cccc--eEEEEEc
Confidence            33444777777777888775  1111111  2789999987766555 443  4799999999999 7888  9999999


Q ss_pred             ChhHHHHHH----HH-------HHhcC-CCCChhhHHHHhhccc------cHHHHHHHHHHHHHHHHHHHhcCCCccEEe
Q 021783          138 GERLAKELY----FL-------QNAEG-SGLAPFDCWICLRGVK------TMALRVEKQQDNAQKIAEFLASHPRVKKVN  199 (307)
Q Consensus       138 ~~~~~~~~~----~~-------~~~~~-~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  199 (307)
                      ++.+.+.-.    ..       ..... ++++.+.-+.....++      .++...++-.++++.|.++++..+-.    
T Consensus       214 ~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~fy----  289 (365)
T COG1932         214 PDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSDFY----  289 (365)
T ss_pred             HHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCcc----
Confidence            876654311    11       11112 2333333332222221      22333455577888899999877411    


Q ss_pred             cCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCC
Q 021783          200 YAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTE  279 (307)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  279 (307)
                      ......         ..| .-..++|++.+.+..+.++.++...|...--|+-                         ..
T Consensus       290 ~~~v~~---------~~R-S~mnV~f~~~~~~ld~~fv~eae~~gl~~lkGhr-------------------------~v  334 (365)
T COG1932         290 RNLVAK---------ANR-SRMNVTFTLVDAELDKGFVAEAEAAGLIYLKGHR-------------------------SV  334 (365)
T ss_pred             ccccch---------hhc-cceeEEEEcCcHHHHHHHHHHHHHcCCceecccc-------------------------CC
Confidence            111110         011 2345678888888788899988888775555421                         01


Q ss_pred             CeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          280 DLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       280 ~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                      +-+|+|+..    ++++.+++.++.+.++
T Consensus       335 gGmRasiynA~~~e~veaL~~fm~~f~~~  363 (365)
T COG1932         335 GGLRASIYNAVPLEDVEALTDFMDWFEET  363 (365)
T ss_pred             CceeeeeecCCCHHHHHHHHHHHHHHHHh
Confidence            229999963    7788887777776654

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=97.73  E-value=9.6e-05  Score=60.36  Aligned_cols=204  Identities=17%  Similarity=0.169  Sum_probs=119.8

Q ss_pred             CceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCc----CCccCCCccEEEeccccccccCCCce
Q 021783           60 WTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVL----SRPLELGADIVMHSATKFIAGHSDVM  130 (307)
Q Consensus        60 ~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~----~~~~~~~~d~~~~s~~K~~~g~~g~~  130 (307)
                      ...+.+-++.++-.|.+.|    .+++++..+.+|-..|.|+++. .|..    .....++..--+.++.|-++  -|-.
T Consensus       209 gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmG--NGhP  286 (452)
T KOG1403|consen  209 GVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMG--NGHP  286 (452)
T ss_pred             cHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchheecccCC--CCCe
Confidence            4455666677888888886    8899999999999999999984 3322    13333343333344677763  2333


Q ss_pred             eEEEEEcChhHHHHHHH--HHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCc
Q 021783          131 AGVLAVKGERLAKELYF--LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG  208 (307)
Q Consensus       131 ~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~  208 (307)
                      .++++..++ +.+.+..  ...+..++-++..+...++-++.++  -++++++++.+.++|...-+-.+...+-+...  
T Consensus       287 Va~Vattke-IA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e--~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGDv--  361 (452)
T KOG1403|consen  287 VAAVATTKE-IAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCE--DENLQEHAQQVGEKLEVLLRRLKQKHECIGDV--  361 (452)
T ss_pred             eeEEeccHH-HHHHhccccceehhccCCCchhHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHhhhccceecc--
Confidence            888888744 5555443  2222333444555666555554333  25667777777666653211001111212112  


Q ss_pred             hHHHhhhccCCCceEEEEe--------CCHHHHHHHHhcCCcc-eeecCCCCccceeecccccCCCCCcHHHHHhcCCCC
Q 021783          209 HELHYSQAKGAGSVLSFLT--------GSLALSKHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTE  279 (307)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  279 (307)
                              ++.|.++.+.+        ++.+.+.+++.++++. ++..+.-+.                         .+
T Consensus       362 --------RGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDGP-------------------------h~  408 (452)
T KOG1403|consen  362 --------RGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADGP-------------------------HR  408 (452)
T ss_pred             --------ccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCCC-------------------------CC
Confidence                    44555666654        3445678888888764 576654332                         23


Q ss_pred             CeEEEE----eccCChHHHHHHHHHHHh
Q 021783          280 DLVRIS----VGIEDVNDLISDLDKALR  303 (307)
Q Consensus       280 ~~iRis----~~~~~~~~~i~~l~~~l~  303 (307)
                      +-+.|-    |..++.++.+..|.+.|.
T Consensus       409 NilKiKPPmCFneena~e~v~~ld~iLT  436 (452)
T KOG1403|consen  409 NILKIKPPMCFNEENADEFVLGLDEILT  436 (452)
T ss_pred             ceeecCCCcccChhhHHHHHHHHHHHHH
Confidence            334444    455899999999988875

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=96.22  E-value=0.0044  Score=50.02  Aligned_cols=97  Identities=19%  Similarity=0.187  Sum_probs=60.5

Q ss_pred             cCCcEEEEecC--------CChHHHHhhcCC-CceEEEEeCCCCC--cccc-ccHHHHHHHHHHcCCEEEEeCccCCCCc
Q 021783           37 KTGVVVKRVNT--------CDLDEVASAIGP-WTKLVWVESPTNP--RQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVL  104 (307)
Q Consensus        37 ~~g~~~~~v~~--------~d~~~l~~~l~~-~~~~v~~~~~~n~--tG~~-~~~~~l~~~~~~~~~~li~D~a~~~~~~  104 (307)
                      ..|.+++.+..        .|++.+++.+.. ....|++.+..+.  .... -.+++|+.+|..|+++-++..+|+...-
T Consensus       122 ~agfepiiie~i~d~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqse  201 (432)
T KOG3843|consen  122 HAGFEPIIIENILDGDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSE  201 (432)
T ss_pred             hcCCCceeeeccccchHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchH
Confidence            45666665553        277777777762 2333333222110  1111 2499999999999999999999985322


Q ss_pred             C------CccCCC-ccEEEeccccccccCCCceeEEEEE
Q 021783          105 S------RPLELG-ADIVMHSATKFIAGHSDVMAGVLAV  136 (307)
Q Consensus       105 ~------~~~~~~-~d~~~~s~~K~~~g~~g~~~G~~~~  136 (307)
                      .      ...+.| .|.++.|+.|.|.-|-|   |.++.
T Consensus       202 e~i~~iaa~~~~grida~vqsldknf~vpvg---gaiia  237 (432)
T KOG3843|consen  202 ECIHKIAAAAECGRIDAFVQSLDKNFMVPVG---GAIIA  237 (432)
T ss_pred             HHHHHHHHHhhhccHHHHHHHhhhcceeecc---hhHhh
Confidence            1      122223 68999999999977764   54443

>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin)

Probab=86.92  E-value=1.6  Score=31.28  Aligned_cols=88  Identities=15%  Similarity=0.173  Sum_probs=58.4

Q ss_pred             HHHHhhhcccCCcEEEEecCC-ChHHHHhhcC-CCceEEEEeCCCCCccccccHHHHHHHHHHc--CCEEEEeCccCCCC
Q 021783           28 DRLLSRVTPKTGVVVKRVNTC-DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPV  103 (307)
Q Consensus        28 ~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~~--~~~li~D~a~~~~~  103 (307)
                      ...+...++..|.++..++.+ +.+++.+.+. .++.+|.++...  +.......++++..++.  ++.+++=+.+....
T Consensus        17 l~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~--~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~   94 (121)
T PF02310_consen   17 LLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSM--TPNLPEAKRLARAIKERNPNIPIVVGGPHATAD   94 (121)
T ss_dssp             HHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESS--STHHHHHHHHHHHHHTTCTTSEEEEEESSSGHH
T ss_pred             HHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccC--cCcHHHHHHHHHHHHhcCCCCEEEEECCchhcC
Confidence            344667788899999999876 4677777664 577778776432  34455678888888887  78999988775433


Q ss_pred             cCCccC--CCccEEEe
Q 021783          104 LSRPLE--LGADIVMH  117 (307)
Q Consensus       104 ~~~~~~--~~~d~~~~  117 (307)
                      .....+  .++|.++.
T Consensus        95 ~~~~l~~~~~~D~vv~  110 (121)
T PF02310_consen   95 PEEILREYPGIDYVVR  110 (121)
T ss_dssp             HHHHHHHHHTSEEEEE
T ss_pred             hHHHhccCcCcceecC
Confidence            332222  46676553

Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	307
1ibj_A	464	Crystal Structure Of Cystathionine Beta-Lyase From		1e-158
3e6g_A	400	Crystal Structure Of Xometc, A Cystathionine C-Lyas		4e-71
2nmp_A	403	Crystal Structure Of Human Cystathionine Gamma Lyas		9e-69
3elp_B	410	Structure Of Cystationine Gamma Lyase Length = 410		1e-68
3qhx_A	392	Crystal Structure Of Cystathionine Gamma-Synthase M		5e-67
1n8p_A	393	Crystal Structure Of Cystathionine Gamma-lyase From		6e-67
3aej_A	389	Reaction Intermediate Structure Of Entamoeba Histol		4e-66
3mkj_A	398	Methionine Gamma-Lyase From Citrobacter Freundii Wi		2e-65
3acz_A	389	Crystal Structure Of Entamoeba Histolytica Methioni		2e-65
2rfv_A	398	High Resolution Structure Of L-Methionine Gamma-Lya		8e-65
1y4i_A	398	Crystal Structure Of Citrobacter Freundii L-Methion		2e-64
3jwa_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		2e-64
3jw9_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		2e-64
1pff_A	331	Crystal Structure Of Homocysteine Alpha-, Gamma-Lya		1e-62
1e5e_A	404	Methionine Gamma-Lyase (Mgl) From Trichomonas Vagin		4e-61
1pg8_A	398	Crystal Structure Of L-Methionine Alpha-, Gamma-Lya		2e-59
3vk2_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		7e-59
1gc0_A	398	Crystal Structure Of The Pyridoxal-5'-Phosphate Dep		8e-59
1cs1_A	386	Cystathionine Gamma-Synthase (Cgs) From Escherichia		2e-57
3ndn_A	414	Crystal Structure Of O-Succinylhomoserine Sulfhydry		8e-52
1qgn_A	445	Cystathionine Gamma-Synthase From Nicotiana Tabacum		6e-49
2ctz_A	421	Crystal Structure Of O-Acetyl Homoserine Sulfhydryl		2e-40
3ri6_A	430	A Novel Mechanism Of Sulfur Transfer Catalyzed By O		5e-35
2cb1_A	412	Crystal Structure Of O-Actetyl Homoserine Sulfhydry		8e-35
1cl2_A	395	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		1e-29
2fq6_A	415	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		1e-29
1cl1_A	395	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		5e-29

>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana Length = 464

Iteration: 1
 Score =  552 bits (1423), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 260/307 (84%), Positives = 289/307 (94%)
Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           MAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVVVKRVNT  LDEVA+AIGP 
Sbjct: 158 MAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQ 217
Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMSPVLSRPLELGADIVMHSAT
Sbjct: 218 TKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSAT 277
Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           KFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDCW+CLRG+KTMALR+EKQQ+
Sbjct: 278 KFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQE 337
Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
           NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGSV SF+TGS+ALSKH+VETT
Sbjct: 338 NARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETT 397
Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
           KYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDLVRIS GIEDV+DLISDLD 
Sbjct: 398 KYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDI 457
Query: 301 ALRTGPL 307
           A +T PL
Sbjct: 458 AFKTFPL 464

>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like Protein From Xanthomonas Oryzae Pv.Oryzae Length = 400

Iteration: 1
 Score =  264 bits (675), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 142/306 (46%), Positives = 199/306 (65%), Gaps = 5/306 (1%)
Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT-GVVVKRVNTCDLDEVASAIGP 59
           MAA + V  LL  G  +VA DDLYGGT RL  RV  +T G+    V+  D     +AI  
Sbjct: 92  MAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDPAAFKAAIRA 151
Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            TK+VW+E+PTNP  ++ DI  IA +A  HG L +VDN+  SP+L RPL LGAD+V+HSA
Sbjct: 152 DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSA 211
Query: 120 TKFIAGHSDVMAGVLAVKGER--LAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 177
           TK++ GHSD++ G+ AV G+   LA+++ FLQN+ G    PFD ++ LRG+KT+ LR+  
Sbjct: 212 TKYLNGHSDMVGGI-AVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKTLPLRMRA 270
Query: 178 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHV 236
             +NA  +A++L +HP ++KV Y GL  HP H L   Q  G G ++S  L G    +K  
Sbjct: 271 HCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRF 330
Query: 237 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS 296
            E T+ F++  S G V+SL++ P  M+HASIPV  R+  G+++ LVR+SVGIED+ DL  
Sbjct: 331 CEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLRG 390
Query: 297 DLDKAL 302
           DL++AL
Sbjct: 391 DLERAL 396

>pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase Length = 403

Iteration: 1
 Score =  256 bits (655), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 126/289 (43%), Positives = 187/289 (64%), Gaps = 2/289 (0%)
Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           +AA   +THLL  G++I+  DD+YGGT+R   +V  + G+ +  V+   +  + +AI P 
Sbjct: 92  LAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPE 151
Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV-DNSIMSPVLSRPLELGADIVMHSA 119
           TKLVW+E+PTNP Q++ DI   A + H HG ++LV DN+ MSP   RPL LGADI M+SA
Sbjct: 152 TKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSA 211
Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           TK++ GHSDV+ G+++V  E L   L FLQN+ G+  +P DC++C RG+KT+ +R+EK  
Sbjct: 212 TKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKHF 271
Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVE 238
            N   +A+FL S+P V+KV Y GLP HP HEL   Q  G  G V  ++ G+L  ++  ++
Sbjct: 272 KNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLK 331
Query: 239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG 287
             K F++  S G  +SL  +P  M+HAS+    R   G+++ L+R+SVG
Sbjct: 332 NLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVG 380

>pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase Length = 410

Iteration: 1
 Score =  256 bits (653), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 126/289 (43%), Positives = 187/289 (64%), Gaps = 2/289 (0%)
Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           +AA   +THLL  G++I+  DD+YGGT+R   +V  + G+ +  V+   +  + +AI P 
Sbjct: 96  LAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPE 155
Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV-DNSIMSPVLSRPLELGADIVMHSA 119
           TKLVW+E+PTNP Q++ DI   A + H HG ++LV DN+ MSP   RPL LGADI M+SA
Sbjct: 156 TKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSA 215
Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           TK++ GHSDV+ G+++V  E L   L FLQN+ G+  +P DC++C RG+KT+ +R+EK  
Sbjct: 216 TKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKHF 275
Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVE 238
            N   +A+FL S+P V+KV Y GLP HP HEL   Q  G  G V  ++ G+L  ++  ++
Sbjct: 276 KNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLK 335
Query: 239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG 287
             K F++  S G  +SL  +P  M+HAS+    R   G+++ L+R+SVG
Sbjct: 336 NLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVG 384

>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes Length = 392

Iteration: 1
 Score =  251 bits (640), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 133/302 (44%), Positives = 182/302 (60%), Gaps = 4/302 (1%)
Query: 2   AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWT 61
           AA  A+  +L  G+ +V  DD YGGT RL+ +V     V    V   DLD V +AI P T
Sbjct: 93  AADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALADLDAVRAAIRPTT 152
Query: 62  KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATK 121
           +L+WVE+PTNP   I DI  IA++     A +LVDN+  SP L +PL LGAD+V+HS T 
Sbjct: 153 RLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTX 212
Query: 122 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDN 181
           +I GHSDV+ G L    E L +   FLQN  G+   PFD ++ +RG+KT+ LR+++  +N
Sbjct: 213 YIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTLVLRMQRHSEN 272
Query: 182 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETT 240
           A  +AEFLA HP +  V Y GLP HPGH +   Q +G G ++S  +      ++ +   T
Sbjct: 273 AAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKT 332
Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
             F +  S GSV+SLI  P  M+HAS      +   + +DLVR+SVGIEDV DL+ DL +
Sbjct: 333 NIFILAESLGSVESLIEHPSAMTHASTAGSQLE---VPDDLVRLSVGIEDVADLLDDLKQ 389
Query: 301 AL 302
           AL
Sbjct: 390 AL 391

>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast Length = 393

Iteration: 1
 Score =  250 bits (639), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 134/310 (43%), Positives = 193/310 (62%), Gaps = 9/310 (2%)
Query: 2   AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWT 61
           A  A +   L  G   V+  D+YGGT R  ++V    GV     N   L+++   I   T
Sbjct: 81  ATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDL-LNDLPQLIKENT 139
Query: 62  KLVWVESPTNPRQQICDIRKIAEMAHAHGA----LLLVDNSIMSPVLSRPLELGADIVMH 117
           KLVW+E+PTNP  ++ DI+K+A++   H A    +L+VDN+ +SP +S PL  GADIV+H
Sbjct: 140 KLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVH 199
Query: 118 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 177
           SATK+I GHSDV+ GVLA   + L + L FLQNA G+  +PFD W+  RG+KT+ LRV +
Sbjct: 200 SATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLHLRVRQ 259
Query: 178 QQDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGA--GSVLSF-LTGSLALS 233
              +A KIAEFLA+    V  VNY GL  HP +++   Q + A  G ++SF + G    +
Sbjct: 260 AALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAA 319
Query: 234 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVND 293
                +T+ F++  S G ++SL+ +P  M+H  IP E R+A G+ +DLVRISVGIED +D
Sbjct: 320 SKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDD 379
Query: 294 LISDLDKALR 303
           L+ D+ +AL+
Sbjct: 380 LLEDIKQALK 389

>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Tetramer Containing Michaelis Complex And Methionine- Pyridoxal-5'-Phosphate Length = 389

Iteration: 1
 Score =  248 bits (632), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 124/304 (40%), Positives = 191/304 (62%), Gaps = 1/304 (0%)
Query: 1   MAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           M A+++ T   L  G+ ++AGD LYG T  L +   P+ G+ V  ++T D+++V +A  P
Sbjct: 84  MGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKP 143
Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            TK+V++ESP NP  ++ DI+ IA + H  GA L+VD +  SP   +PLELGADI +HS 
Sbjct: 144 NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSV 203
Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           +K+I GH DV+ GV + K       + F +   GS +AP D ++C RG+KT+ +R++   
Sbjct: 204 SKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHM 263
Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVET 239
           +N  K+A+FL  H ++ KVN+ GL   PGH++   Q  G GS   F   S   +K ++E 
Sbjct: 264 ENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEH 323
Query: 240 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD 299
            K  ++ VS G V +LI  P  M+HA++P  + + +G+T +LVRISVGIE+V+D+I+DL 
Sbjct: 324 LKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLK 383
Query: 300 KALR 303
           +AL 
Sbjct: 384 QALE 387

>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With Pyridoximine-5'- Phosphate Length = 398

Iteration: 1
 Score =  246 bits (627), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 123/308 (39%), Positives = 192/308 (62%), Gaps = 6/308 (1%)
Query: 2   AALAAVTHLLGT----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI 57
           + ++A+T  L T    G+ IV+   +YG T   LS   PK G+ V  V+    +E+ +A+
Sbjct: 87  SGISAITTTLLTLCQQGDHIVSASAIYGXTHAFLSHSMPKFGINVSFVDAAKPEEIRAAM 146
Query: 58  GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMH 117
            P TK+V++E+P NP   + DI  +A +AH  GALL+VDN+ MSP   +PL+LGADIV+H
Sbjct: 147 RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYXQQPLQLGADIVVH 206
Query: 118 SATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLAPFDCWICLRGVKTMALRVE 176
           S TK+I GH DV+ G++  K E + +  +  L++  G  ++PF+ W+ LRGVKT+ +R+E
Sbjct: 207 SVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGXMSPFNAWLTLRGVKTLGIRME 266
Query: 177 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKH 235
           +  +NA KIA FL  HP + +V Y GL  HP +EL   Q    G ++SF + G L   + 
Sbjct: 267 RHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRR 326
Query: 236 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLI 295
           ++ + +   + VS G  ++LI  P  M+H+ +  E R   G+T+ L+R+SVG+ED  D+I
Sbjct: 327 MINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDII 386
Query: 296 SDLDKALR 303
           +DL+ A+R
Sbjct: 387 NDLEHAIR 394

>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Length = 389

Iteration: 1
 Score =  245 bits (626), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 123/304 (40%), Positives = 190/304 (62%), Gaps = 1/304 (0%)
Query: 1   MAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           M A+++ T   L  G+ ++AGD LYG T  L +   P+ G+ V  ++T D+++V +A  P
Sbjct: 84  MGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKP 143
Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            TK+V++ESP NP  ++ DI+ IA + H  GA L+VD +  SP   +PLELGADI +HS 
Sbjct: 144 NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSV 203
Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           + +I GH DV+ GV + K       + F +   GS +AP D ++C RG+KT+ +R++   
Sbjct: 204 SXYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHM 263
Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVET 239
           +N  K+A+FL  H ++ KVN+ GL   PGH++   Q  G GS   F   S   +K ++E 
Sbjct: 264 ENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEH 323
Query: 240 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD 299
            K  ++ VS G V +LI  P  M+HA++P  + + +G+T +LVRISVGIE+V+D+I+DL 
Sbjct: 324 LKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLK 383
Query: 300 KALR 303
           +AL 
Sbjct: 384 QALE 387

>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii Length = 398

Iteration: 1
 Score =  243 bits (621), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 122/308 (39%), Positives = 192/308 (62%), Gaps = 6/308 (1%)
Query: 2   AALAAVTHLLGT----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI 57
           + ++A+T  L T    G+ IV+   +YG T   LS   PK G+ V+ V+    +E+ +A+
Sbjct: 87  SGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAM 146
Query: 58  GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMH 117
            P TK+V++E+P NP   + DI  +A +AH  GALL+VDN+ MSP   +PL+LGADIV+H
Sbjct: 147 RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVH 206
Query: 118 SATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLAPFDCWICLRGVKTMALRVE 176
           S T +I GH DV+ G++  K E + +  +  L++  G  ++PF+ W+ LRGVKT+ +R+E
Sbjct: 207 SVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLGIRME 266
Query: 177 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKH 235
           +  +NA KIA FL  HP + +V Y GL  HP +EL   Q    G ++SF + G L   + 
Sbjct: 267 RHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRR 326
Query: 236 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLI 295
           ++ + +   + VS G  ++LI  P  M+H+ +  E R   G+T+ L+R+SVG+ED  D+I
Sbjct: 327 MINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDII 386
Query: 296 SDLDKALR 303
           +DL+ A+R
Sbjct: 387 NDLEHAIR 394

>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii L-Methionine-Lyase Length = 398

Iteration: 1
 Score =  242 bits (618), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 122/308 (39%), Positives = 192/308 (62%), Gaps = 6/308 (1%)
Query: 2   AALAAVTHLLGT----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI 57
           + ++A+T  L T    G+ IV+   +YG T   LS   PK G+ V+ V+    +E+ +A+
Sbjct: 87  SGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPEEIRAAM 146
Query: 58  GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMH 117
            P TK+V++E+P NP   + DI  +A +AH  GALL+VDN+ MSP   +PL+LGADIV+H
Sbjct: 147 RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVH 206
Query: 118 SATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLAPFDCWICLRGVKTMALRVE 176
           S T +I GH DV+ G++  K E + +  +  L++  G  ++PF+ W+ LRGVKT+ +R+E
Sbjct: 207 SVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLGIRME 266
Query: 177 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKH 235
           +  +NA KIA FL  HP + +V Y GL  HP +EL   Q    G ++SF + G L   + 
Sbjct: 267 RHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRR 326
Query: 236 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLI 295
           ++ + +   + VS G  ++LI  P  M+H+ +  E R   G+T+ L+R+SVG+ED  D+I
Sbjct: 327 MINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDII 386
Query: 296 SDLDKALR 303
           +DL+ A+R
Sbjct: 387 NDLEHAIR 394

>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With Methionine Phosphinate Length = 398

Iteration: 1
 Score =  242 bits (618), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 122/308 (39%), Positives = 191/308 (62%), Gaps = 6/308 (1%)
Query: 2   AALAAVTHLLGT----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI 57
           + ++A+T  L T    G+ IV+   +YG T   LS   PK G+ V  V+    +E+ +A+
Sbjct: 87  SGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVSFVDAAKPEEIRAAM 146
Query: 58  GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMH 117
            P TK+V++E+P NP   + DI  +A +AH  GALL+VDN+ MSP   +PL+LGADIV+H
Sbjct: 147 RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVH 206
Query: 118 SATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLAPFDCWICLRGVKTMALRVE 176
           S T +I GH DV+ G++  K E + +  +  L++  G  ++PF+ W+ LRGVKT+ +R+E
Sbjct: 207 SVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLGIRME 266
Query: 177 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKH 235
           +  +NA KIA FL  HP + +V Y GL  HP +EL   Q    G ++SF + G L   + 
Sbjct: 267 RHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRR 326
Query: 236 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLI 295
           ++ + +   + VS G  ++LI  P  M+H+ +  E R   G+T+ L+R+SVG+ED  D+I
Sbjct: 327 MINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDII 386
Query: 296 SDLDKALR 303
           +DL+ A+R
Sbjct: 387 NDLEHAIR 394

>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With S-Ethyl-Cysteine Length = 398

Iteration: 1
 Score =  242 bits (618), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 122/308 (39%), Positives = 191/308 (62%), Gaps = 6/308 (1%)
Query: 2   AALAAVTHLLGT----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI 57
           + ++A+T  L T    G+ IV+   +YG T   LS   PK G+ V  V+    +E+ +A+
Sbjct: 87  SGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVSFVDAAKPEEIRAAM 146
Query: 58  GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMH 117
            P TK+V++E+P NP   + DI  +A +AH  GALL+VDN+ MSP   +PL+LGADIV+H
Sbjct: 147 RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVH 206
Query: 118 SATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLAPFDCWICLRGVKTMALRVE 176
           S T +I GH DV+ G++  K E + +  +  L++  G  ++PF+ W+ LRGVKT+ +R+E
Sbjct: 207 SVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLGIRME 266
Query: 177 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKH 235
           +  +NA KIA FL  HP + +V Y GL  HP +EL   Q    G ++SF + G L   + 
Sbjct: 267 RHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRR 326
Query: 236 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLI 295
           ++ + +   + VS G  ++LI  P  M+H+ +  E R   G+T+ L+R+SVG+ED  D+I
Sbjct: 327 MINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDII 386
Query: 296 SDLDKALR 303
           +DL+ A+R
Sbjct: 387 NDLEHAIR 394

>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At 1.8 Angstroms Length = 331

Iteration: 1
 Score =  236 bits (602), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/305 (40%), Positives = 190/305 (62%), Gaps = 3/305 (0%)
Query: 1   MAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           M A+AA V   L  G+ +++ D LYG T  L      K GV V  ++      +   + P
Sbjct: 23  MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLKP 82
Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALL-LVDNSIMSPVLSRPLELGADIVMHS 118
            T++V+ E+P NP  ++ DI    + A     +L +VDN+  SP+L+ PL+LG DIV+HS
Sbjct: 83  NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHS 142
Query: 119 ATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 177
           ATK+I GH+DV+AG++  + + +AK +   +++  G+ ++P D W+  RG  T+ +RV++
Sbjct: 143 ATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKR 202
Query: 178 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVV 237
             +NAQK+AEFL  H  VKKV Y GLP+HPGHE+   Q K  GS+++F    L  +K V+
Sbjct: 203 AAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVL 262
Query: 238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD 297
           +     S+ VS G  +SLI  P  M+HA +P E R+A GLT++L+R+SVG E+V D+I D
Sbjct: 263 DNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDD 322
Query: 298 LDKAL 302
           L +AL
Sbjct: 323 LKQAL 327

>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In Complex With Propargylglycine Length = 404

Iteration: 1
 Score =  231 bits (589), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 115/306 (37%), Positives = 195/306 (63%), Gaps = 4/306 (1%)
Query: 1   MAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           M A+AA V  +L  G+ +++ + LYG T  L      K G+ V  +NT    EV   + P
Sbjct: 87  MGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKP 146
Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAH-GALLLVDNSIMSPVLSRPLELGADIVMHS 118
            TK+V+ E+P NP  +I D+ ++ + AH+  G L++ DN+  SP+++ P++ G D+V+HS
Sbjct: 147 NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHS 206
Query: 119 ATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 177
           ATK+I GH+DV+AG++  K + L +  +  +++  GS ++P D W+  RG+ T+ +R++ 
Sbjct: 207 ATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLNIRMKA 266
Query: 178 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHV 236
           + +NA K+AE+L SHP V+KV Y G  +H GH++   Q +  GS+++F+  S    +K +
Sbjct: 267 ESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKL 326
Query: 237 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS 296
           ++  K  ++ VS G  +SLI  P  M+HA +P E R+A G+T+ ++R+SVGIED ++LI+
Sbjct: 327 LDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIA 386
Query: 297 DLDKAL 302
           D  + L
Sbjct: 387 DFKQGL 392

>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase Length = 398

Iteration: 1
 Score =  226 bits (575), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 115/297 (38%), Positives = 186/297 (62%), Gaps = 4/297 (1%)
Query: 10  LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESP 69
           LL  G+E++ G+ LYG T   L     + GV ++ V+  DL  + +A+ P T++++ ESP
Sbjct: 100 LLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESP 159
Query: 70  TNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDV 129
            NP   + DI  +A++A  HGA ++VDN+  +P L RPLELGAD+V+HSATK+++GH D+
Sbjct: 160 ANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDI 219
Query: 130 MAGVLAVKGERLAKELYF--LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE 187
            AG++ V  + L   +    L++  G+ L+P D  + +RG+KT+ LR+++   NAQ +AE
Sbjct: 220 TAGIV-VGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAE 278
Query: 188 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSIT 246
           FLA  P+V+ ++Y GL   P + L   Q    G +++F L G +   +  +   + FS  
Sbjct: 279 FLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRA 338
Query: 247 VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 303
           VS G  +SL   P  M+H+S   E R   G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 339 VSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALK 395

>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Pseudomonas Putida C116h Mutant. Length = 398

Iteration: 1
 Score =  224 bits (570), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 114/297 (38%), Positives = 185/297 (62%), Gaps = 4/297 (1%)
Query: 10  LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESP 69
           LL  G+E++ G+ LYG T   L     + GV ++ V+  DL  + +A+ P T++++ ESP
Sbjct: 100 LLRPGDEVLLGNTLYGHTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESP 159
Query: 70  TNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDV 129
            NP   + DI  +A++A  HGA ++VDN+  +P L RPLELGAD+V+HSAT +++GH D+
Sbjct: 160 ANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATXYLSGHGDI 219
Query: 130 MAGVLAVKGERLAKELYF--LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE 187
            AG++ V  + L   +    L++  G+ L+P D  + +RG+KT+ LR+++   NAQ +AE
Sbjct: 220 TAGIV-VGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAE 278
Query: 188 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSIT 246
           FLA  P+V+ ++Y GL   P + L   Q    G +++F L G +   +  +   + FS  
Sbjct: 279 FLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRA 338
Query: 247 VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 303
           VS G  +SL   P  M+H+S   E R   G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 339 VSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALK 395

>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent L- Methionine Gamma-Lyase From Pseudomonas Putida Length = 398

Iteration: 1
 Score =  223 bits (569), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 114/297 (38%), Positives = 185/297 (62%), Gaps = 4/297 (1%)
Query: 10  LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESP 69
           LL  G+E++ G+ LYG T   L     + GV ++ V+  DL  + +A+ P T++++ ESP
Sbjct: 100 LLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESP 159
Query: 70  TNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDV 129
            NP   + DI  +A++A  HGA ++VDN+  +P L RPLELGAD+V+HSAT +++GH D+
Sbjct: 160 ANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATXYLSGHGDI 219
Query: 130 MAGVLAVKGERLAKELYF--LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE 187
            AG++ V  + L   +    L++  G+ L+P D  + +RG+KT+ LR+++   NAQ +AE
Sbjct: 220 TAGIV-VGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAE 278
Query: 188 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSIT 246
           FLA  P+V+ ++Y GL   P + L   Q    G +++F L G +   +  +   + FS  
Sbjct: 279 FLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRA 338
Query: 247 VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 303
           VS G  +SL   P  M+H+S   E R   G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 339 VSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALK 395

>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli Length = 386

Iteration: 1
 Score =  219 bits (557), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 126/305 (41%), Positives = 180/305 (59%), Gaps = 2/305 (0%)
Query: 1   MAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           M+A+  VT   L  G+ +VA  D YGG+ RL   +  +    V  V+  D   + +A+  
Sbjct: 77  MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAE 136
Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
             KLV VESP+NP  ++ DI KI  +A   GA+ +VDN+ +SP L  PL LGAD+V+HS 
Sbjct: 137 KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSC 196
Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           T ++ GHSDV+AGV+  K   +  EL +  N  G     FD ++ LRG++T+  R+E  Q
Sbjct: 197 TXYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQ 256
Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVE 238
            NAQ I ++L + P VKK+ +  LPE+ GHE+   Q KG G++LSF L G     +  + 
Sbjct: 257 RNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLG 316
Query: 239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL 298
               F++  S G V+SLIS    M+HA +  E R A G++E L+RIS GIED  DLI+DL
Sbjct: 317 GLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADL 376
Query: 299 DKALR 303
           +   R
Sbjct: 377 ENGFR 381

>pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase From Mycobacterium Tuberculosis Covalently Bound To Pyridoxal-5- Length = 414

Iteration: 1
 Score =  200 bits (509), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 177/306 (57%), Gaps = 5/306 (1%)
Query: 2   AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWT 61
           A   ++  LLG G+ +VA   L+G    + S + P+ GV    V+  DL +   A+   T
Sbjct: 108 AVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPT 167
Query: 62  KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATK 121
           + V+ E+P+NP Q + DI  + E+AHA GA +++DN   +P+L +   LG D+V++S T 
Sbjct: 168 QAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTX 227
Query: 122 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDN 181
            I G   V+ G +    E +   +  L    G  ++ F+ W+ L+G++T+A+RV+    +
Sbjct: 228 HIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSNAS 287
Query: 182 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKH----V 236
           AQ+IAEFL  HP V+ V Y  LP HP ++L   Q  G G+V++F L     ++K     V
Sbjct: 288 AQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEV 347
Query: 237 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS 296
           ++  +   I+ + G  KSL++ P   +H ++  E R A GL + +VRISVG+ED +DLI+
Sbjct: 348 LDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDLIA 407
Query: 297 DLDKAL 302
           D+D+AL
Sbjct: 408 DIDRAL 413

>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum Length = 445

Iteration: 1
 Score =  191 bits (484), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 104/295 (35%), Positives = 165/295 (55%), Gaps = 3/295 (1%)
Query: 10  LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-PWTKLVWVES 68
           L+  G  IV   D Y  T   +  + PK G+    ++  D+  +  A+      L + ES
Sbjct: 149 LVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTES 208
Query: 69  PTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSD 128
           PTNP  +  DI  ++++ H  GAL+ +D +  +P+  + L LGAD+V+HSATKF+ GH+D
Sbjct: 209 PTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHND 268
Query: 129 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF 188
           V+AG ++    +L  E+  L +  G  L P   ++ +RG+KT+ LRV++Q   A ++AE 
Sbjct: 269 VLAGCIS-GPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEI 327
Query: 189 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITV 247
           L +HP+V+ V Y GL  HP H +   Q  G G  +SF + G L  +   V+  K   I  
Sbjct: 328 LEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAP 387
Query: 248 SFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 302
           SFG  +S++  P  MS+  +    R   G+ ++LVR S G+ED +DL +D+ +AL
Sbjct: 388 SFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQAL 442

>pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8 Length = 421

Iteration: 1
 Score =  162 bits (410), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 166/336 (49%), Gaps = 35/336 (10%)
Query: 2   AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL-DEVASAIGPW 60
           A   A+T L   G+ IV+  +LYGGT         + G+ V+  +  +  +E  +     
Sbjct: 85  AQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEK 144
Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSA 119
           T+  WVES  NP   I D+  +A+ A   G  L+VDN+  M   L RPL  GA +V HS 
Sbjct: 145 TRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSL 204
Query: 120 TKFIAGHSDVMAGVL---------------------AVKGERLAK---ELYFLQNA---- 151
           TK++ GH  V+AG +                        G RL +   EL F+  A    
Sbjct: 205 TKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDG 264
Query: 152 ---EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG 208
              +G  L PF+ W+ L G++T++LR E+  +N   +A +L   P+V  VNY GLP HP 
Sbjct: 265 LRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPH 324
Query: 209 HELHYSQAKG-AGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHAS 266
           H+      KG  G+VL+F L G    +K  +   K  S   + G  ++L   P   +H+ 
Sbjct: 325 HDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQ 384
Query: 267 IPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 302
           +  E +   G++ ++VR+SVG+E V DL ++L +AL
Sbjct: 385 LSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKEAL 420

>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By O-Acetylhomoserine Sulfhydrylase In Methionine Biosynthetic Pathway Of Wolinella Succinogenes Length = 430

Iteration: 1
 Score =  144 bits (364), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 106/323 (32%), Positives = 168/323 (52%), Gaps = 21/323 (6%)
Query: 1   MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           MAA++ A+  L   G+ +V  D L+G T  L  +  P  G+ V+ V+  D   V  A   
Sbjct: 107 MAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACDE 166
Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            TKL+++E+ +NP+ Q+ D+  ++++ HA G  L+VD ++  P L     LG DI + S+
Sbjct: 167 TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSS 226
Query: 120 TKFIAGHSDVMAGVLAVKGERLAKEL-------------YFLQNAE-------GSGLAPF 159
           TKFI+G    + GVL   G    K L              FL  A        G  L+P 
Sbjct: 227 TKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPH 286
Query: 160 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA 219
           + ++   G++TMALR+E+   NAQ++A +L S P+VK VN+  LP+ P + +   Q + A
Sbjct: 287 NAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYA 346
Query: 220 GSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTE 279
           GS+L+F   S   S   ++  K      +    KSLI  P  + +A    E R    ++ 
Sbjct: 347 GSILTFELESKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISP 406
Query: 280 DLVRISVGIEDVNDLISDLDKAL 302
            ++R+SVGIE++ DL  D+ +AL
Sbjct: 407 AMMRLSVGIEEIEDLKEDILQAL 429

>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8,Oah2 Length = 412

Iteration: 1
 Score =  144 bits (362), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 157/317 (49%), Gaps = 30/317 (9%)
Query: 14  GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPR 73
           G+E+VA   L+G T  L  +V    GV V+ V+  + + V  A+   T+ V+VE+  NP 
Sbjct: 95  GDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP-EPEAVREALSAKTRAVFVETVANPA 153
Query: 74  QQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKFIAGHSDVMAG 132
             + D+  +A +A   G  L+VDN+   +  L RPL  GA +V+ S T + +GH  V+ G
Sbjct: 154 LLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTXWASGHGSVLGG 213
Query: 133 -VLAVKGERLAKELYFLQ--------------------------NAEGSGLAPFDCWICL 165
            VL+ + E       FLQ                          +  G  L+PF+ ++  
Sbjct: 214 AVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLF 273
Query: 166 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF 225
           +G++T+ALRV +  + A+ +AE L  HP+VK + Y GLPE P H          G +L+ 
Sbjct: 274 QGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTL 333
Query: 226 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS 285
             G L  +   +   +      + G  ++L+  P   +H+ +  E R   G+T  LVR+S
Sbjct: 334 DLGDLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVS 392
Query: 286 VGIEDVNDLISDLDKAL 302
           VG+ED  DL++  ++AL
Sbjct: 393 VGLEDPLDLLALFEEAL 409

>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With Aminoethoxyvinylglycine Length = 395

Iteration: 1
 Score =  127 bits (318), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 152/302 (50%), Gaps = 24/302 (7%)
Query: 14  GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPR 73
           G+ ++  +  Y  +    S++  K GV     +     ++   + P TK+V++ESP +  
Sbjct: 101 GDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSIT 160
Query: 74  QQICDIRKIAEMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA 131
            ++ D+  I     +    A++++DN+  + VL + L+ G D+ + +ATK++ GHSD M 
Sbjct: 161 MEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMI 220
Query: 132 GVLAVKG---ERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF 188
           G         E+L +  Y +    G  +     +I  RG++T+ +R+ +  +++ K+AE+
Sbjct: 221 GTAVCNARCWEQLRENAYLM----GQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEW 276
Query: 189 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSI 245
           LA HP+V +VN+  LP   GHE       G+  + SF+      ++ +   ++    FS+
Sbjct: 277 LAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSM 336
Query: 246 TVSFGSVKSLISMPCFMSHASIPVEVRQAR-----GLTEDLVRISVGIEDVNDLISDLDK 300
             S+G  +SLI        A+ P  +   R       +  L+R+ +G+EDV+DLI+DLD 
Sbjct: 337 AYSWGGYESLIL-------ANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDA 389
Query: 301 AL 302
Sbjct: 390 GF 391

>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide Length = 415

Iteration: 1
 Score =  127 bits (318), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 152/302 (50%), Gaps = 24/302 (7%)
Query: 14  GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPR 73
           G+ ++  +  Y  +    S++  K GV     +     ++   + P TK+V++ESP +  
Sbjct: 121 GDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSIT 180
Query: 74  QQICDIRKIAEMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA 131
            ++ D+  I     +    A++++DN+  + VL + L+ G D+ + +ATK++ GHSD M 
Sbjct: 181 MEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMI 240
Query: 132 GVLAVKG---ERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF 188
           G         E+L +  Y +    G  +     +I  RG++T+ +R+ +  +++ K+AE+
Sbjct: 241 GTAVCNARCWEQLRENAYLM----GQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEW 296
Query: 189 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSI 245
           LA HP+V +VN+  LP   GHE       G+  + SF+      ++ +   ++    FS+
Sbjct: 297 LAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSM 356
Query: 246 TVSFGSVKSLISMPCFMSHASIPVEVRQAR-----GLTEDLVRISVGIEDVNDLISDLDK 300
             S+G  +SLI        A+ P  +   R       +  L+R+ +G+EDV+DLI+DLD 
Sbjct: 357 AYSWGGYESLIL-------ANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDA 409
Query: 301 AL 302
Sbjct: 410 GF 411

>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli Length = 395

Iteration: 1
 Score =  124 bits (312), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 151/302 (50%), Gaps = 24/302 (7%)
Query: 14  GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPR 73
           G+ ++  +  Y  +    S++  K GV     +     ++   + P TK+V++ESP +  
Sbjct: 101 GDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSIT 160
Query: 74  QQICDIRKIAEMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA 131
            ++ D+  I     +    A++++DN+  + VL + L+ G D+ + +AT ++ GHSD M 
Sbjct: 161 MEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATXYLVGHSDAMI 220
Query: 132 GVLAVKG---ERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF 188
           G         E+L +  Y +    G  +     +I  RG++T+ +R+ +  +++ K+AE+
Sbjct: 221 GTAVCNARCWEQLRENAYLM----GQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEW 276
Query: 189 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSI 245
           LA HP+V +VN+  LP   GHE       G+  + SF+      ++ +   ++    FS+
Sbjct: 277 LAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSM 336
Query: 246 TVSFGSVKSLISMPCFMSHASIPVEVRQAR-----GLTEDLVRISVGIEDVNDLISDLDK 300
             S+G  +SLI        A+ P  +   R       +  L+R+ +G+EDV+DLI+DLD 
Sbjct: 337 AYSWGGYESLIL-------ANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDA 389
Query: 301 AL 302
Sbjct: 390 GF 391

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	307
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	0.0
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	1e-170
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	1e-165
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	1e-161
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	1e-160
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	1e-159
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	1e-158
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	1e-154
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	1e-153
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	1e-153
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	1e-151
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	1e-150
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	1e-146
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	1e-133
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	1e-98
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	2e-94
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	5e-91
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	3e-62
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	1e-57
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	4e-51
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	1e-47
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	2e-40
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	9e-08
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	7e-06
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	8e-06
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	2e-05
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	2e-05
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	8e-05
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	8e-05
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	1e-04
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	1e-04
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	2e-04
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	2e-04
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	4e-04
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	5e-04
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	6e-04
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	8e-04

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 Length = 464

 Score =  516 bits (1331), Expect = 0.0
 Identities = 260/307 (84%), Positives = 289/307 (94%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           MAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVVVKRVNT  LDEVA+AIGP 
Sbjct: 158 MAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQ 217

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMSPVLSRPLELGADIVMHSAT
Sbjct: 218 TKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSAT 277

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           KFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDCW+CLRG+KTMALR+EKQQ+
Sbjct: 278 KFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQE 337

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
           NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGSV SF+TGS+ALSKH+VETT
Sbjct: 338 NARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETT 397

Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
           KYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDLVRIS GIEDV+DLISDLD 
Sbjct: 398 KYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDI 457

Query: 301 ALRTGPL 307
           A +T PL
Sbjct: 458 AFKTFPL 464

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B Length = 403

 Score =  477 bits (1229), Expect = e-170
 Identities = 134/305 (43%), Positives = 201/305 (65%), Gaps = 2/305 (0%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           +AA   +THLL  G++I+  DD+YGGT+R   +V  + G+ +  V+   +  + +AI P 
Sbjct: 92  LAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPE 151

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLL-VDNSIMSPVLSRPLELGADIVMHSA 119
           TKLVW+E+PTNP Q++ DI   A + H HG ++L VDN+ MSP   RPL LGADI M+SA
Sbjct: 152 TKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSA 211

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           TK++ GHSDV+ G+++V  E L   L FLQN+ G+  +P DC++C RG+KT+ +R+EK  
Sbjct: 212 TKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKHF 271

Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVE 238
            N   +A+FL S+P V+KV Y GLP HP HEL   Q  G   +++F + G+L  ++  ++
Sbjct: 272 KNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLK 331

Query: 239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL 298
             K F++  S G  +SL  +P  M+HAS+    R   G+++ L+R+SVG+ED  DL+ DL
Sbjct: 332 NLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDL 391

Query: 299 DKALR 303
           D+AL+
Sbjct: 392 DQALK 396

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Length = 393

 Score =  463 bits (1194), Expect = e-165
 Identities = 134/311 (43%), Positives = 193/311 (62%), Gaps = 9/311 (2%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
            A  A +   L  G   V+  D+YGGT R  ++V    GV     N   L+++   I   
Sbjct: 80  SATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTND-LLNDLPQLIKEN 138

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGA----LLLVDNSIMSPVLSRPLELGADIVM 116
           TKLVW+E+PTNP  ++ DI+K+A++   H A    +L+VDN+ +SP +S PL  GADIV+
Sbjct: 139 TKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVV 198

Query: 117 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVE 176
           HSATK+I GHSDV+ GVLA   + L + L FLQNA G+  +PFD W+  RG+KT+ LRV 
Sbjct: 199 HSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLHLRVR 258

Query: 177 KQQDNAQKIAEFLASHP-RVKKVNYAGLPEHPGHELHYSQAKGA--GSVLSF-LTGSLAL 232
           +   +A KIAEFLA+    V  VNY GL  HP +++   Q + A  G ++SF + G    
Sbjct: 259 QAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEA 318

Query: 233 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVN 292
           +     +T+ F++  S G ++SL+ +P  M+H  IP E R+A G+ +DLVRISVGIED +
Sbjct: 319 ASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTD 378

Query: 293 DLISDLDKALR 303
           DL+ D+ +AL+
Sbjct: 379 DLLEDIKQALK 389

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 Length = 386

 Score =  454 bits (1171), Expect = e-161
 Identities = 127/305 (41%), Positives = 182/305 (59%), Gaps = 2/305 (0%)

Query: 1   MAALAAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           M+A+  VT + L  G+ +VA  D YGG+ RL   +  +    V  V+  D   + +A+  
Sbjct: 77  MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAE 136

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
             KLV VESP+NP  ++ DI KI  +A   GA+ +VDN+ +SP L  PL LGAD+V+HS 
Sbjct: 137 KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSC 196

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           TK++ GHSDV+AGV+  K   +  EL +  N  G     FD ++ LRG++T+  R+E  Q
Sbjct: 197 TKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQ 256

Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVE 238
            NAQ I ++L + P VKK+ +  LPE+ GHE+   Q KG G++LSF L G     +  + 
Sbjct: 257 RNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLG 316

Query: 239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL 298
               F++  S G V+SLIS    M+HA +  E R A G++E L+RIS GIED  DLI+DL
Sbjct: 317 GLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADL 376

Query: 299 DKALR 303
           +   R
Sbjct: 377 ENGFR 381

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* Length = 389

 Score =  450 bits (1160), Expect = e-160
 Identities = 123/303 (40%), Positives = 189/303 (62%), Gaps = 1/303 (0%)

Query: 1   MAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           M A  ++    L  G+ ++AGD LYG T  L +   P+ G+ V  ++T D+++V +A  P
Sbjct: 84  MGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKP 143

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            TK+V++ESP NP  ++ DI+ IA + H  GA L+VD +  SP   +PLELGADI +HS 
Sbjct: 144 NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSV 203

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           +K+I GH DV+ GV + K       + F +   GS +AP D ++C RG+KT+ +R++   
Sbjct: 204 SKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHM 263

Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVET 239
           +N  K+A+FL  H ++ KVN+ GL   PGH++   Q  G GS   F   S   +K ++E 
Sbjct: 264 ENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEH 323

Query: 240 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD 299
            K  ++ VS G V +LI  P  M+HA++P  + + +G+T +LVRISVGIE+V+D+I+DL 
Sbjct: 324 LKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLK 383

Query: 300 KAL 302
           +AL
Sbjct: 384 QAL 386

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} PDB: 3e6g_A* 3nnp_A* Length = 400

 Score =  449 bits (1158), Expect = e-159
 Identities = 140/305 (45%), Positives = 196/305 (64%), Gaps = 3/305 (0%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT-GVVVKRVNTCDLDEVASAIGP 59
           MAA + V  LL  G  +VA DDLYGGT RL  RV  +T G+    V+  D     +AI  
Sbjct: 92  MAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDPAAFKAAIRA 151

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            TK+VW+E+PTNP  ++ DI  IA +A  HG L +VDN+  SP+L RPL LGAD+V+HSA
Sbjct: 152 DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSA 211

Query: 120 TKFIAGHSDVMAGVLAVK-GERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 178
           TK++ GHSD++ G+  V     LA+++ FLQN+ G    PFD ++ LRG+KT+ LR+   
Sbjct: 212 TKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKTLPLRMRAH 271

Query: 179 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVV 237
            +NA  +A++L +HP ++KV Y GL  HP H L   Q  G G ++S  L G    +K   
Sbjct: 272 CENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFC 331

Query: 238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD 297
           E T+ F++  S G V+SL++ P  M+HASIPV  R+  G+++ LVR+SVGIED+ DL  D
Sbjct: 332 EKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLRGD 391

Query: 298 LDKAL 302
           L++AL
Sbjct: 392 LERAL 396

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} PDB: 3qi6_A* Length = 392

 Score =  445 bits (1147), Expect = e-158
 Identities = 134/304 (44%), Positives = 181/304 (59%), Gaps = 5/304 (1%)

Query: 1   MAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           MAA       +L  G+ +V  DD YGGT RL+ +V     V    V   DLD V +AI P
Sbjct: 91  MAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALADLDAVRAAIRP 150

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            T+L+WVE+PTNP   I DI  IA++     A +LVDN+  SP L +PL LGAD+V+HS 
Sbjct: 151 TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQPLSLGADVVLHST 210

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           TK+I GHSDV+ G L    E L +   FLQN  G+   PFD ++ +RG+KT+ LR+++  
Sbjct: 211 TKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTLVLRMQRHS 270

Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVE 238
           +NA  +AEFLA HP +  V Y GLP HPGH +   Q +G G ++S  +      ++ +  
Sbjct: 271 ENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCA 330

Query: 239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL 298
            T  F +  S GSV+SLI  P  M+HAS          + +DLVR+SVGIEDV DL+ DL
Sbjct: 331 KTNIFILAESLGSVESLIEHPSAMTHASTA---GSQLEVPDDLVRLSVGIEDVADLLDDL 387

Query: 299 DKAL 302
            +AL
Sbjct: 388 KQAL 391

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 Length = 331

 Score =  433 bits (1116), Expect = e-154
 Identities = 124/305 (40%), Positives = 190/305 (62%), Gaps = 3/305 (0%)

Query: 1   MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           M A+ A+V   L  G+ +++ D LYG T  L      K GV V  ++      +   + P
Sbjct: 23  MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLKP 82

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAH-AHGALLLVDNSIMSPVLSRPLELGADIVMHS 118
            T++V+ E+P NP  ++ DI    + A      L++VDN+  SP+L+ PL+LG DIV+HS
Sbjct: 83  NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHS 142

Query: 119 ATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 177
           ATK+I GH+DV+AG++  + + +AK +   +++  G+ ++P D W+  RG  T+ +RV++
Sbjct: 143 ATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKR 202

Query: 178 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVV 237
             +NAQK+AEFL  H  VKKV Y GLP+HPGHE+   Q K  GS+++F    L  +K V+
Sbjct: 203 AAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVL 262

Query: 238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD 297
           +     S+ VS G  +SLI  P  M+HA +P E R+A GLT++L+R+SVG E+V D+I D
Sbjct: 263 DNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDD 322

Query: 298 LDKAL 302
           L +AL
Sbjct: 323 LKQAL 327

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* Length = 398

 Score =  433 bits (1116), Expect = e-153
 Identities = 116/306 (37%), Positives = 189/306 (61%), Gaps = 3/306 (0%)

Query: 1   MAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           M A  + +  LL  G+E++ G+ LYG T   L     + GV ++ V+  DL  + +A+ P
Sbjct: 90  MGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTP 149

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            T++++ ESP NP   + DI  +A++A  HGA ++VDN+  +P L RPLELGAD+V+HSA
Sbjct: 150 ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSA 209

Query: 120 TKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 178
           TK+++GH D+ AG++      + +  L  L++  G+ L+P D  + +RG+KT+ LR+++ 
Sbjct: 210 TKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRH 269

Query: 179 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVV 237
             NAQ +AEFLA  P+V+ ++Y GL   P + L   Q    G +++F L G +   +  +
Sbjct: 270 CANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFM 329

Query: 238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD 297
              + FS  VS G  +SL   P  M+H+S   E R   G++E LVR+SVG+ED++DL++D
Sbjct: 330 NALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLAD 389

Query: 298 LDKALR 303
           + +AL+
Sbjct: 390 VQQALK 395

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* Length = 445

 Score =  434 bits (1119), Expect = e-153
 Identities = 106/305 (34%), Positives = 167/305 (54%), Gaps = 4/305 (1%)

Query: 1   MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG- 58
           M A    +  L+  G  IV   D Y  T   +  + PK G+    ++  D+  +  A+  
Sbjct: 139 MCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQ 198

Query: 59  PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHS 118
               L + ESPTNP  +  DI  ++++ H  GAL+ +D +  +P+  + L LGAD+V+HS
Sbjct: 199 KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHS 258

Query: 119 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 178
           ATKF+ GH+DV+AG +     +L  E+  L +  G  L P   ++ +RG+KT+ LRV++Q
Sbjct: 259 ATKFLGGHNDVLAGCI-SGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQ 317

Query: 179 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVV 237
              A ++AE L +HP+V+ V Y GL  HP H +   Q  G G  +SF + G L  +   V
Sbjct: 318 NSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFV 377

Query: 238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD 297
           +  K   I  SFG  +S++  P  MS+  +    R   G+ ++LVR S G+ED +DL +D
Sbjct: 378 DALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKAD 437

Query: 298 LDKAL 302
           + +AL
Sbjct: 438 ILQAL 442

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* Length = 404

 Score =  428 bits (1104), Expect = e-151
 Identities = 114/308 (37%), Positives = 192/308 (62%), Gaps = 4/308 (1%)

Query: 1   MAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           M A  A V  +L  G+ +++ + LYG T  L      K G+ V  +NT    EV   + P
Sbjct: 87  MGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKP 146

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHA-HGALLLVDNSIMSPVLSRPLELGADIVMHS 118
            TK+V+ E+P NP  +I D+ ++ + AH+  G L++ DN+  SP+++ P++ G D+V+HS
Sbjct: 147 NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHS 206

Query: 119 ATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 177
           ATK+I GH+DV+AG++  K + L +  +  +++  GS ++P D W+  RG+ T+ +R++ 
Sbjct: 207 ATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLNIRMKA 266

Query: 178 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHV 236
           + +NA K+AE+L SHP V+KV Y G  +H GH++   Q +  GS+++F L      +K +
Sbjct: 267 ESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKL 326

Query: 237 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS 296
           ++  K  ++ VS G  +SLI  P  M+HA +P E R+A G+T+ ++R+SVGIED ++LI+
Sbjct: 327 LDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIA 386

Query: 297 DLDKALRT 304
           D  + L  
Sbjct: 387 DFKQGLDA 394

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* Length = 398

 Score =  426 bits (1097), Expect = e-150
 Identities = 121/306 (39%), Positives = 189/306 (61%), Gaps = 3/306 (0%)

Query: 1   MAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           ++A    +  L   G+ IV+   +YG T   LS   PK G+ V+ V+    +E+ +A+ P
Sbjct: 89  ISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRP 148

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            TK+V++E+P NP   + DI  +A +AH  GALL+VDN+ MSP   +PL+LGADIV+HS 
Sbjct: 149 ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSV 208

Query: 120 TKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 178
           TK+I GH DV+ G++  K E + +     L++  G  ++PF+ W+ LRGVKT+ +R+E+ 
Sbjct: 209 TKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLGIRMERH 268

Query: 179 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVV 237
            +NA KIA FL  HP + +V Y GL  HP +EL   Q    G ++SF + G L   + ++
Sbjct: 269 CENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMI 328

Query: 238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD 297
            + +   + VS G  ++LI  P  M+H+ +  E R   G+T+ L+R+SVG+ED  D+I+D
Sbjct: 329 NSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIIND 388

Query: 298 LDKALR 303
           L+ A+R
Sbjct: 389 LEHAIR 394

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} Length = 414

 Score =  415 bits (1069), Expect = e-146
 Identities = 112/308 (36%), Positives = 180/308 (58%), Gaps = 6/308 (1%)

Query: 1   MAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           MAA   ++  LLG G+ +VA   L+G    + S + P+ GV    V+  DL +   A+  
Sbjct: 106 MAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSV 165

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            T+ V+ E+P+NP Q + DI  + E+AHA GA +++DN   +P+L +   LG D+V++S 
Sbjct: 166 PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSG 225

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           TK I G   V+ G +    E +   +  L    G  ++ F+ W+ L+G++T+A+RV+   
Sbjct: 226 TKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSN 285

Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSK---- 234
            +AQ+IAEFL  HP V+ V Y  LP HP ++L   Q  G G+V++F L     ++K    
Sbjct: 286 ASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAF 345

Query: 235 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL 294
            V++  +   I+ + G  KSL++ P   +H ++  E R A GL + +VRISVG+ED +DL
Sbjct: 346 EVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDL 405

Query: 295 ISDLDKAL 302
           I+D+D+AL
Sbjct: 406 IADIDRAL 413

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* Length = 415

 Score =  382 bits (983), Expect = e-133
 Identities = 84/308 (27%), Positives = 157/308 (50%), Gaps = 9/308 (2%)

Query: 1   MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
            AA+A ++   +  G+ ++  +  Y  +    S++  K GV     +     ++   + P
Sbjct: 107 AAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQP 166

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMH 117
            TK+V++ESP +   ++ D+  I     +    A++++DN+  + VL + L+ G D+ + 
Sbjct: 167 NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQ 226

Query: 118 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 177
           +ATK++ GHSD M G  AV   R  ++L       G  +     +I  RG++T+ +R+ +
Sbjct: 227 AATKYLVGHSDAMIGT-AVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQ 285

Query: 178 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL---TGSLALSK 234
             +++ K+AE+LA HP+V +VN+  LP   GHE       G+  + SF+     +     
Sbjct: 286 HHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELA 345

Query: 235 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL 294
           + ++    FS+  S+G  +SLI        A+I    +     +  L+R+ +G+EDV+DL
Sbjct: 346 NYLDNFSLFSMAYSWGGYESLILANQPEHIAAIR--PQGEIDFSGTLIRLHIGLEDVDDL 403

Query: 295 ISDLDKAL 302
           I+DLD   
Sbjct: 404 IADLDAGF 411

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} Length = 430

 Score =  295 bits (758), Expect = 1e-98
 Identities = 104/325 (32%), Positives = 168/325 (51%), Gaps = 25/325 (7%)

Query: 1   MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           MAA++ A+  L   G+ +V  D L+G T  L  +  P  G+ V+ V+  D   V  A   
Sbjct: 107 MAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACDE 166

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
            TKL+++E+ +NP+ Q+ D+  ++++ HA G  L+VD ++  P L     LG DI + S+
Sbjct: 167 TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSS 226

Query: 120 TKFIAGHSDVMAGVLAVKG--------------ERLAKELY-------FLQNAEGSGLAP 158
           TKFI+G    + GVL   G               +     +         QN  G  L+P
Sbjct: 227 TKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQN-LGPSLSP 285

Query: 159 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG 218
            + ++   G++TMALR+E+   NAQ++A +L S P+VK VN+  LP+ P + +   Q + 
Sbjct: 286 HNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRY 345

Query: 219 AGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL 277
           AGS+L+F L    A S   ++  K      +    KSLI  P  + +A    E R    +
Sbjct: 346 AGSILTFELESKEA-SYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEI 404

Query: 278 TEDLVRISVGIEDVNDLISDLDKAL 302
           +  ++R+SVGIE++ DL  D+ +AL
Sbjct: 405 SPAMMRLSVGIEEIEDLKEDILQAL 429

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} Length = 412

 Score =  284 bits (729), Expect = 2e-94
 Identities = 100/333 (30%), Positives = 161/333 (48%), Gaps = 33/333 (9%)

Query: 1   MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
            AA   A+  LL  G+E+VA   L+G T  L  +V    GV V+ V+  + + V  A+  
Sbjct: 81  QAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP-EPEAVREALSA 139

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHS 118
            T+ V+VE+  NP   + D+  +A +A   G  L+VDN+   +  L RPL  GA +V+ S
Sbjct: 140 KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVES 199

Query: 119 ATKFIAGHSDVMAGVL---------------------AVKGERLAKELY-------FLQN 150
            TK+ +GH  V+ G +                      +  E L    +        L  
Sbjct: 200 LTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSL 259

Query: 151 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 210
             G  L+PF+ ++  +G++T+ALRV +  + A+ +AE L  HP+VK + Y GLPE P H 
Sbjct: 260 C-GMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHR 318

Query: 211 LHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE 270
                    G +L+   G L  +   +   +      + G  ++L+  P   +H+ +  E
Sbjct: 319 NARKYLASGGPILTLDLGDLERASRFLGAIRLLKA-ANLGDARTLLVHPWTTTHSRLKEE 377

Query: 271 VRQARGLTEDLVRISVGIEDVNDLISDLDKALR 303
            R   G+T  LVR+SVG+ED  DL++  ++AL 
Sbjct: 378 ARLQAGVTPGLVRVSVGLEDPLDLLALFEEALE 410

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 Length = 421

 Score =  276 bits (708), Expect = 5e-91
 Identities = 107/340 (31%), Positives = 164/340 (48%), Gaps = 40/340 (11%)

Query: 1   MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL-DEVASAIG 58
            AA   A+T L   G+ IV+  +LYGGT         + G+ V+  +  +  +E  +   
Sbjct: 83  HAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTD 142

Query: 59  PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMH 117
             T+  WVES  NP   I D+  +A+ A   G  L+VDN+  M   L RPL  GA +V H
Sbjct: 143 EKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTH 202

Query: 118 SATKFIAGHSDVMAGVL-------------------------AVKGERLAKELYFLQNA- 151
           S TK++ GH  V+AG +                             E    EL F+  A 
Sbjct: 203 SLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFG-ELAFIVKAR 261

Query: 152 ------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE 205
                 +G  L PF+ W+ L G++T++LR E+  +N   +A +L   P+V  VNY GLP 
Sbjct: 262 VDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPH 321

Query: 206 HPGHEL--HYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 262
           HP H+    Y +    G+VL+F L G    +K  +   K  S   + G  ++L   P   
Sbjct: 322 HPHHDRAQKYFK-GKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPAST 380

Query: 263 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 302
           +H+ +  E +   G++ ++VR+SVG+E V DL ++L +AL
Sbjct: 381 THSQLSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKEAL 420

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} Length = 431

 Score =  202 bits (515), Expect = 3e-62
 Identities = 42/246 (17%), Positives = 80/246 (32%), Gaps = 22/246 (8%)

Query: 1   MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK------------TGVVVKRVNT 47
             A++ A+  +L  G+E++        T   +  V  K              V +     
Sbjct: 93  THAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGL 152

Query: 48  CDLDEVASAIGPWTKLVWVESP----TNPRQQICDIRKIAEMAHA--HGALLLVDNSIMS 101
            D + VA+AI   TK++ ++      T P   I  I+++           ++ VDN    
Sbjct: 153 VDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGE 212

Query: 102 PV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD 160
            +    P  +GAD++  S  K   G      G +  K +   +   +   + G G     
Sbjct: 213 FIEEQEPCHVGADLMAGSLIKNPGGGIVKTGGYIVGKEQ-YVEACAYRLTSPGIGAEAGA 271

Query: 161 CWICLRGVKTMALRVEKQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHELHYSQAKGA 219
               L+ +             A K A F A+   ++               +   Q    
Sbjct: 272 SLYSLQEMYQGFFLAPHVAGQALKGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDK 331

Query: 220 GSVLSF 225
             +++F
Sbjct: 332 DRMIAF 337

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* Length = 374

 Score =  188 bits (479), Expect = 1e-57
 Identities = 56/300 (18%), Positives = 104/300 (34%), Gaps = 28/300 (9%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
            +A+ A    L   + I    +L G      S       V  K   +  + E+ + I   
Sbjct: 86  SSAILATILALKPKKVIHYLPELPGHPSIERS----CKIVNAKYFESDKVGEILNKIDKD 141

Query: 61  TKLVWVESPTN-PRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADI 114
           T ++   S  +    ++ + +K+   A    A++ VD++  + V         L+LGAD+
Sbjct: 142 TLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADL 201

Query: 115 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL- 173
           V+ S  K + G      G+LA K E L  ++Y      G    P       R +K   L 
Sbjct: 202 VVTSTDKLMEGP---RGGLLAGKKE-LVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLE 257

Query: 174 RVEKQQDNAQKIA----EFLASHPR-VKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LT 227
           R+ K  + A+       E L    + +           P   +     K      +  + 
Sbjct: 258 RIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDD----TINIK 313

Query: 228 GSLALSKHVVETTKYFSITVSF--GSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS 285
             + +  ++++     +ITV+   G+ KSL           I         + E +    
Sbjct: 314 KLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIK-AIVESIKMAF 372

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} Length = 427

 Score =  173 bits (440), Expect = 4e-51
 Identities = 48/237 (20%), Positives = 81/237 (34%), Gaps = 28/237 (11%)

Query: 1   MAAL-AAVTHLLGTGEEIVA--------GDDLYGGTDRLLSRVTPKTGVVVKRVNTC--- 48
             A+ AA+   L   + +++          D+ G  D        + GV  K V+     
Sbjct: 102 THAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGK 161

Query: 49  -DLDEVASAIGP--WTKLVWVESPTN----PRQQICDIRKIAEMAHA--HGALLLVDNSI 99
            D++ V   +      KL+ ++  T        +I +I +I +         ++ VDN  
Sbjct: 162 VDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCY 221

Query: 100 MSPVLSR-PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP 158
              V  + P ++GADI+  S  K I G      G +A K E    +  F     G G   
Sbjct: 222 GEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEE-YVTQATFRVTVPGIGGEC 280

Query: 159 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 215
              +  +R +             A K A F A    +     AG    P +    + 
Sbjct: 281 GSTFGVMRSLYEGLFMAPHVTIEAVKGAVFCARIMEL-----AGFDVLPKYNDKRTD 332

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* Length = 427

 Score =  164 bits (416), Expect = 1e-47
 Identities = 41/232 (17%), Positives = 82/232 (35%), Gaps = 32/232 (13%)

Query: 1   MAAL-AAVTHLLGTGEEIVAG--------DDLYGGTDRLLSRVTPKTGVVVKRVNTC--- 48
             AL AA+   L  G  +++          D+ G T+        + G+  K+V+     
Sbjct: 101 THALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDG 160

Query: 49  --DLDEVASAIGPWTKLVWVESPTN------PRQQICDIRKIAEMAHA--HGALLLVDNS 98
             +L+E+   +     +  V    +          I DI+ I +         +  VDN 
Sbjct: 161 KPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNC 220

Query: 99  IMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 157
               +    P ++GAD++  S  K I G      G LA   +   ++  +     G G  
Sbjct: 221 YGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKD-CIEKTSYRLTVPGIGGE 279

Query: 158 PFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH 206
               +  +R +     +A  +  +   A K A   +    ++   +  +P++
Sbjct: 280 CGSTFGVVRSMYQGLFLAPHISME---ALKGAILCSRI--MELAGFEVMPKY 326

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* Length = 409

 Score =  144 bits (365), Expect = 2e-40
 Identities = 43/234 (18%), Positives = 75/234 (32%), Gaps = 34/234 (14%)

Query: 1   MAAL-AAVTHLLGTGEEIVA-GDDLYGGTDRL------LSRVTPKTGVVVKRVNTC---- 48
             A+   +  +L   +E++      Y   + +               +    V       
Sbjct: 87  THAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGD 146

Query: 49  -DLDEVASAIGPWTKLVWVESP----TNPRQQICDIRKIAEMAHAHG--ALLLVDNSIMS 101
            D   +A  + P TK++ ++        P   I  I+++           ++ VDN    
Sbjct: 147 VDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGE 206

Query: 102 PV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG----SGL 156
            V    P E+GADI+  S  K   G      G +A K   L     +     G    +G 
Sbjct: 207 FVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEA-LVDLCGYRLTTPGIGREAGA 265

Query: 157 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 210
           + +      +G   +A  V  Q   A K A F A       +   G+   P  +
Sbjct: 266 SLYSLLEMYQGF-FLAPHVTAQ---AIKGARFTA-----AMLAEFGVEADPVWD 310

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 49  DLDEVASAIGPWTK-----LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV 103
             +  A  I    K     L  +  P      + D++KIA++   +   LLV+ +     
Sbjct: 131 TPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGR 190

Query: 104 LSRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 141
           +  P+   E+GAD ++ S  K +A  +    GV+ +K E  
Sbjct: 191 M--PVSLKEIGADFIVGSGHKSMA--ASGPIGVMGMKEEWA 227

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} Length = 406

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 14/116 (12%)

Query: 37  KTGVVVK--RVNT----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG 90
           + G  VK   V+         +  S I   T+LV V S +     + D+R + ++ H  G
Sbjct: 136 RYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVG 195

Query: 91  ALLLVDNSIMSPVLSRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK 143
           AL++VD+S  +P   R L   E  AD+V  +A  +       +  ++      +  
Sbjct: 196 ALVVVDHSAAAP--YRLLDIRETDADVVTVNAHAWGGPP---IGAMVFRDPSVMNS 246

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 8e-07
 Identities = 48/335 (14%), Positives = 94/335 (28%), Gaps = 100/335 (29%)

Query: 15  EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQ 74
           + I+   D   GT RL   +  K   +V++     ++EV      +           P  
Sbjct: 52  DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF----VEEVLRINYKFLMSPIKTEQRQPS- 106

Query: 75  QICDIRKIAEMAHAHGALLLVDNSIMSPV-LSRP----------LEL--GADIVMHSATK 121
               + ++          L  DN + +   +SR           LEL    ++++     
Sbjct: 107 ---MMTRMYIEQRDR---LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID---- 156

Query: 122 FIAGHSDVMAG----VLAVKGERLAKELYFLQNAEGSGLAPFDC-WICLRGVKTMALRVE 176
              G    + G     +A+             + +      F   W+ L+   +    +E
Sbjct: 157 ---G----VLGSGKTWVALDV---------CLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 177 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGH-ELHYSQAKGAGSVL----SFLTGSLA 231
             Q    +I             N+    +H  + +L     +     L     +    L 
Sbjct: 201 MLQKLLYQIDP-----------NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 232 L----SKHVVE----------TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL 277
           L    +               TT++  +T    +           +H S+      +  L
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT--------TTHISL---DHHSMTL 298

Query: 278 TED----LVRISVGIEDVNDLISDL-DKALRTGPL 307
           T D    L+   +          DL  + L T P 
Sbjct: 299 TPDEVKSLLLKYLDCR-----PQDLPREVLTTNPR 328

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* Length = 406

 Score = 46.3 bits (111), Expect = 7e-06
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 37  KTGVVVKRVN-----TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 91
           + G  ++ +      T  L+ + +     T+L+ +   +N       + ++  +AH HGA
Sbjct: 136 RVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGA 195

Query: 92  LLLVD 96
            +LVD
Sbjct: 196 KVLVD 200

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 Length = 420

 Score = 46.0 bits (110), Expect = 8e-06
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 37  KTGVVVKRVN-----TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 91
           KTG V+K V      + DL+   + +   TKLV V   +N    +    +IA++AH  GA
Sbjct: 141 KTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGA 200

Query: 92  LLLVD 96
            +LVD
Sbjct: 201 KVLVD 205

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* Length = 390

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 18/121 (14%)

Query: 37  KTGVVVKRV-------NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH 89
           + G+  +                +A+ +GP T+LV +        Q+  + +I  +   H
Sbjct: 124 RFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRH 183

Query: 90  G----ALLLVDNSIMSPVLSRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA 142
                  +LVD +  +  L  PL    L  D    +  K+ AG + V  G L + G+ L 
Sbjct: 184 QGNYPVRVLVDGAQSAGSL--PLDFSRLEVDYYAFTGHKWFAGPAGV--GGLYIHGDCLG 239

Query: 143 K 143
           +
Sbjct: 240 E 240

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 34/119 (28%)

Query: 49  DLDEVASAIGPWTKLVWVESPTNPRQQICDI---RKIAEMAHAHGALLLVDN-------- 97
           D   ++  +   TKLV+V SP NP   + D+   +++ ++   +G ++  D         
Sbjct: 157 DWRSISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFD 216

Query: 98  -----SIMSPVLSRPLELGAD----IVMHSATK----------FIAGHSDVMAGVLAVK 137
                      L    +LG      ++  S +K          F+AG ++++   L  +
Sbjct: 217 GNKPLGC----LQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYR 271

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456

 Score = 43.1 bits (101), Expect = 8e-05
 Identities = 39/267 (14%), Positives = 87/267 (32%), Gaps = 39/267 (14%)

Query: 49  DLDEVASAI-----GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV 103
            ++++ +AI           V       P +   DI +IA++   +    +++ +     
Sbjct: 215 PVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQN 274

Query: 104 ------LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 157
                 L +  +   D V+ S+ K     + +  G++        KE+        S   
Sbjct: 275 NYYLEKLKKAFKYRVDAVVSSSDKN--LLTPIGGGLVYSTDAEFIKEISLSYPGRASATP 332

Query: 158 PFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ 215
             +  + L   G K     V+ Q+++ + + E L    +          +  G  L    
Sbjct: 333 VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSK----------KTGGKFLDVES 382

Query: 216 AKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQAR 275
              +   ++     +A   + +  T    I  +       +      +H  I +    A 
Sbjct: 383 PIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGT---YTHDYIVMNA--AI 437

Query: 276 GLTEDLVRISVGIEDVNDLISDLDKAL 302
           G+           ED+ + +S L+K L
Sbjct: 438 GVRT---------EDIVNSVSKLEKIL 455

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} Length = 446

 Score = 42.9 bits (101), Expect = 8e-05
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 59  PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS-----IMSPVLSRPLELGAD 113
              KLV +  P     +  ++ ++ +  H     +L+D +      +       L   AD
Sbjct: 145 DGHKLVVLTYPN-YYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQAD 203

Query: 114 IVMHSATKFIAGHSDVMAGVLAVKGERLAKE 144
            V+ S  K +   +  M  VL +      +E
Sbjct: 204 YVVQSFHKTLPALT--MGSVLYIHKNAPYRE 232

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 33/118 (27%)

Query: 33  RVTPKTGVVVKRV------NTCDLDEVASAIGPWTKLVWVESPTNP------RQQICDIR 80
           R   ++G  ++R            D +  A+ P    +++ +P NP      R     ++
Sbjct: 113 RALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERP---LLQ 169

Query: 81  KIAEMAHAHGALLLVD----------NSIMSPVLSRP-LELGADIVMHSATKF--IAG 125
            IA+   +    L++D             +  +   P +      V+ S TKF  I G
Sbjct: 170 AIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHI-----WVLRSLTKFYAIPG 222

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} Length = 755

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 20/193 (10%), Positives = 45/193 (23%), Gaps = 26/193 (13%)

Query: 51  DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS-----IMSPVL- 104
                  G       V + T       + ++  ++       L  D +       +P+  
Sbjct: 303 PLTKDKAGQKPSYCVVTNCT-YDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYA 361

Query: 105 --------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG-------ERLAKELYFLQ 149
                               HS  K +   S   A  + V+         R  +      
Sbjct: 362 DHYAMRGEPGDHNGPTVFATHSTHKLLNALS--QASYIHVREGRGAINFSRFNQAYMMHA 419

Query: 150 NAEGSG--LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP 207
                    A  D  + +    +     ++  D A    + +A   +    + +   +  
Sbjct: 420 TTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPW 479

Query: 208 GHELHYSQAKGAG 220
             E+      G  
Sbjct: 480 NKEVVTDPQTGKT 492

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* Length = 438

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 75  QICDIRKIAEMAHAHGALLLVDNSIMS-PVLSRPLELGADIV 115
            + D+   AE AH  GAL +     +S  VL  P   GADI 
Sbjct: 210 ALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIA 251

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 33/117 (28%)

Query: 49  DLDEVASAIGPWTKLVWVESPTNPRQQICDI---RKIAEMAHAHGALLLVDN-------- 97
            L+E          LV + SP NP  +   +       ++A  H  +L+ D         
Sbjct: 146 SLNE---KELQEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYEN 202

Query: 98  ----SIMSPVLSRPLELGAD---IVMHSATK----------FIAGHSDVMAGVLAVK 137
               S++           A    +V+HS +K          FIAG S ++    A +
Sbjct: 203 TPPPSLLEA--CMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFR 257

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 9/54 (16%)

Query: 49  DLDEVASAIGPWTKLVWVESPTNP------RQQICDIRKIAEMAHAHGALLLVD 96
           D ++   AI   TK V + +P NP      R+   ++  +  +   H  +++ D
Sbjct: 190 DFEQFEKAITSKTKAVIINTPHNPIGKVFTRE---ELTTLGNICVKHNVVIISD 240

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* Length = 474

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 7/44 (15%)

Query: 78  DIRKIAEMAHAHGALLLVD----NSIMSPVLSRPLELGADIVMH 117
            I +I+ +    G  L  D    N+IM    +RP ++G D V+H
Sbjct: 221 RILEISRLCKEAGVQLYYDGANLNAIMG--WARPGDMGFD-VVH 261

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375

 Score = 39.8 bits (94), Expect = 6e-04
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 16/71 (22%)

Query: 39  GVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNP------RQQICDIRKIAEM 85
           G  V             DL+++   I P TK++ + +  NP      R     + ++ E+
Sbjct: 126 GAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRT---YLEELVEI 182

Query: 86  AHAHGALLLVD 96
           A   GA +L D
Sbjct: 183 ASEVGAYILSD 193

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 20/112 (17%)

Query: 2   AALAAVTHLLGTGEEIVAGD---DLY-------GGTDRLLSRVTPKTGVVVKRVN-TCDL 50
           A  A +   +  G+E++  +   D Y       GG  R +     KTG  +   +   D 
Sbjct: 113 ALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDN 172

Query: 51  DEVASAIGPWTKLVWVESPTNP------RQQICDIRKIAEMAHAHGALLLVD 96
           +E+ +     TK++ + +P NP      R    ++  +A +      L + D
Sbjct: 173 NELEALFNEKTKMIIINTPHNPLGKVMDRA---ELEVVANLCKKWNVLCVSD 221

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	307
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	100.0
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	100.0
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	100.0
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	100.0
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	100.0
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	100.0
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	100.0
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	100.0
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	100.0
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	100.0
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	100.0
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	100.0
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	100.0
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	100.0
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	100.0
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	100.0
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	100.0
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.96
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.96
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.96
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.96
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.96
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.96
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.96
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.96
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.96
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.96
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.96
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.96
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.96
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.96
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.96
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.96
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.96
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.96
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.96
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.96
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.95
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.95
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.95
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.95
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.95
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.95
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.95
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.95
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.95
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.95
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.95
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.95
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.95
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.95
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.95
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.95
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.95
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.95
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.95
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.95
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.95
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.95
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.95
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.95
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.95
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.95
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.95
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.95
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.95
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.95
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.95
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.95
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.95
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.95
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.95
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.95
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.95
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.95
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.95
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.95
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.94
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.94
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.94
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.94
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.94
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.94
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.94
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.94
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.94
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.94
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.94
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.94
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.94
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.94
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.94
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.94
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.94
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.94
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.94
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.94
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.94
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.94
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.94
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.94
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.94
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.94
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.93
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.93
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.93
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.93
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.93
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.93
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.93
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.93
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.93
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.93
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.93
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.93
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.93
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.93
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.93
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.93
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.93
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.92
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.92
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.92
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.92
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.92
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.92
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.92
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.92
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.86
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.92
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.92
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.92
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.91
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.91
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.91
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.91
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.91
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.91
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.91
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.91
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.91
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.91
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.91
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.9
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.9
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.9
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.9
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.9
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.9
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.9
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.9
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.89
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.89
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.89
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.89
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.89
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.89
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.89
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.89
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.89
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.89
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.89
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.88
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.88
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.88
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.88
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.88
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.88
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.88
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.87
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.87
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.87
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.87
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.87
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.87
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.87
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.87
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.87
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.86
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.86
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.86
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.86
1svv_A	359	Threonine aldolase; structural genomics, structura	99.86
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.85
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.85
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.85
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.85
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.85
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.85
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.85
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.85
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.85
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.84
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.84
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.84
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.84
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.84
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.83
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.83
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.83
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.83
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.82
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.82
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.81
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.81
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.8
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.79
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.79
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.79
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.78
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.77
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.76
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.76
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.76
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.76
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.76
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.76
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.75
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.75
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.75
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.74
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.74
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.74
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.72
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.72
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.71
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.71
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.49
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.66
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.65
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.65
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.63
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.36
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.29
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.18
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.11
1tks_A	204	3,4-dihydroxy-2-butanone 4-phosphate synthase; rib	80.54

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=100.00  E-value=5.4e-44  Score=314.53  Aligned_cols=302  Identities=36%  Similarity=0.609  Sum_probs=271.1

Q ss_pred             cHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            2 AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         2 aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      +|+ .++.+++++||+|+++++.|+++...+...++..|++++.+|.+|++++++++++++++|++++|+||+|.+.|++
T Consensus       107 ~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~  186 (414)
T 3ndn_A          107 AAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVFFETPSNPMQSLVDIA  186 (414)
T ss_dssp             HHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHTSSCCSEEEEESSCTTTCCCCCHH
T ss_pred             HHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCccccHH
Confidence            455 4566788999999999999999887666666779999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhh
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  160 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (307)
                      +|.++|+++|+++|+|++|+.+....+..+|+|+++.|+||+++++..+++|+++++++.+.+.+.......+..+++..
T Consensus       187 ~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~  266 (414)
T 3ndn_A          187 AVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFN  266 (414)
T ss_dssp             HHHHHHHHTTCEEEEECTTTHHHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHH
T ss_pred             HHHHHHHHcCCEEEEECCCcccccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHH
Confidence            99999999999999999999776666667899999999999995543388999999876665455555556677778888


Q ss_pred             HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC-----HHHHHH
Q 021783          161 CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-----LALSKH  235 (307)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  235 (307)
                      +++...+++.+..+++++.++++.+.++|++++.+..+.++++.++|++.++.++.++.|++++|.+++     .+.+..
T Consensus       267 a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~  346 (414)
T 3ndn_A          267 AWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFE  346 (414)
T ss_dssp             HHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHH
Confidence            999999999999999999999999999999999998999999999999999988888889999999965     567899


Q ss_pred             HHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 021783          236 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  303 (307)
Q Consensus       236 ~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  303 (307)
                      +++.++..++.+++|+.+++.++|...+|..++.+.+.+.|..+++||+|+|.++++++++.|.++|+
T Consensus       347 ~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~e~~~dli~dl~~al~  414 (414)
T 3ndn_A          347 VLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDLIADIDRALS  414 (414)
T ss_dssp             HHHHCSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             HHHhCccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999873

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=100.00  E-value=5.2e-44  Score=315.32  Aligned_cols=301  Identities=33%  Similarity=0.452  Sum_probs=260.1

Q ss_pred             cHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            2 AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         2 aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      +|+ .++.++++|||+|+++++.|+++...+...++..|++++.++.+|++++++++++++++|++++|+||+|.+.|++
T Consensus       108 ~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~  187 (430)
T 3ri6_A          108 AAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACDETTKLLFLETISNPQLQVADLE  187 (430)
T ss_dssp             HHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred             HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhhCCCCeEEEEECCCCCCCeecCHH
Confidence            455 5666789999999999999999887766677889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChh-H------------------
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-L------------------  141 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~-~------------------  141 (307)
                      +|.++|+++|+++|+|++|+.+....+..+|+|+++.|++|+++|++...+|+++.+.+. +                  
T Consensus       188 ~i~~la~~~g~~livD~a~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~  267 (430)
T 3ri6_A          188 ALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAF  267 (430)
T ss_dssp             HHHHHHHTTTCCEEEECTTSCTTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHH
T ss_pred             HHHHHHHHcCCEEEEECCCcccccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhH
Confidence            999999999999999999999888788888999999999999987655668888854321 1                  


Q ss_pred             -HHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCC
Q 021783          142 -AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG  220 (307)
Q Consensus       142 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  220 (307)
                       .+.........+..+++..+|+...+++.+..+++++.++++.+.++|++++.+..+.+|+++++|++.++.++. +.|
T Consensus       268 i~~~~~~~~~~~g~~~~~~~a~l~l~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~-g~G  346 (430)
T 3ri6_A          268 LYKARKEVFQNLGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQF-RYA  346 (430)
T ss_dssp             HHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHC-SSC
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhC-CCC
Confidence             111112334466778889999999999999999999999999999999999999999999999999999998888 788


Q ss_pred             c-eEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHH
Q 021783          221 S-VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD  299 (307)
Q Consensus       221 ~-~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~  299 (307)
                      + +++|.+++.+.+.++++.++..++.+++|+.+++.++|...+|..++.+.+.+.|..+++||+|+|.|+++++++.|+
T Consensus       347 g~~lsf~l~~~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~E~~~dl~~dl~  426 (430)
T 3ri6_A          347 GSILTFELESKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEIEDLKEDIL  426 (430)
T ss_dssp             CSEEEEECSSHHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCSSCHHHHHHHHH
T ss_pred             ceEEEEEECCHHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHH
Confidence            8 999999988889999999999999999999999999999999999998888889999999999999999999999999


Q ss_pred             HHHh
Q 021783          300 KALR  303 (307)
Q Consensus       300 ~~l~  303 (307)
                      ++|+
T Consensus       427 ~al~  430 (430)
T 3ri6_A          427 QALC  430 (430)
T ss_dssp             HHHC
T ss_pred             HhhC
Confidence            9874

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=100.00  E-value=5.1e-43  Score=307.00  Aligned_cols=303  Identities=45%  Similarity=0.738  Sum_probs=274.8

Q ss_pred             CcHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhh-cccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRV-TPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~-~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+|+.++++++++||+|+++++.|++....+... ++..|++++.++.+|++++++++++++++|++++|+||+|.+.|+
T Consensus        92 ~~Ai~~~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l  171 (400)
T 3nmy_A           92 MAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDPAAFKAAIRADTKMVWIETPTNPMLKLVDI  171 (400)
T ss_dssp             HHHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             HHHHHHHHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCCCHHHHHHHhccCCCEEEEECCCCCCCeeecH
Confidence            3566556778899999999999998787666655 667899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeE-EEEEcChhHHHHHHHHHHhcCCCCCh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAG-VLAVKGERLAKELYFLQNAEGSGLAP  158 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G-~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (307)
                      ++|.++|++||+++|+|++|+.+....+..+|+|+++.|++|+++|+....+| +++.+++.+.+.+.......+...++
T Consensus       172 ~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~  251 (400)
T 3nmy_A          172 AAIAVIARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGP  251 (400)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCH
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCH
Confidence            99999999999999999999977666667789999999999999877656678 77777777777777777777888889


Q ss_pred             hhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC-HHHHHHHH
Q 021783          159 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVV  237 (307)
Q Consensus       159 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  237 (307)
                      ..+++...+++.+..+++++.++++.+.++|++++.+..+.++++.++|++.++.++.++.|++++|.+++ .+.+..++
T Consensus       252 ~~a~~~l~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~  331 (400)
T 3nmy_A          252 FDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFC  331 (400)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHH
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988888889999999965 45688999


Q ss_pred             hcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 021783          238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  303 (307)
Q Consensus       238 ~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  303 (307)
                      +.++..++.++.|..++++++|...+|..++.+.+.+.|..++.+|+|+|+++.+.+++.|.++|+
T Consensus       332 ~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~dli~dl~~al~  397 (400)
T 3nmy_A          332 EKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLRGDLERALV  397 (400)
T ss_dssp             HHCSSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             HcCCcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999986

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=100.00  E-value=4.3e-42  Score=303.96  Aligned_cols=303  Identities=34%  Similarity=0.581  Sum_probs=264.9

Q ss_pred             cHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCc-eEEEEeCCCCCccccccH
Q 021783            2 AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWT-KLVWVESPTNPRQQICDI   79 (307)
Q Consensus         2 aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~-~~v~~~~~~n~tG~~~~~   79 (307)
                      +|+ .++.+++++||+|+++++.|+++...+...++..|+++++++.+|+++++++++++| ++|++++|+||+|.+.|+
T Consensus       140 ~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl  219 (445)
T 1qgn_A          140 CASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVDI  219 (445)
T ss_dssp             HHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEESSCTTTCCCCCH
T ss_pred             HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccCCCCEEEEeCCCCCCCcccCH
Confidence            355 455567899999999999998887666556788999999999999999999999888 999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  159 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (307)
                      ++|.++|+++|+++|+|++|+.+....+..+++|+++.|+||+++|+..+++|+++++++ +.+.+.......+...++.
T Consensus       220 ~~I~~la~~~g~~livD~a~~~~~~~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~-l~~~l~~~~~~~g~~~~~~  298 (445)
T 1qgn_A          220 ELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLK-LVSEIRNLHHILGGALNPN  298 (445)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHH-HHHHHHHHHHHHCCCCCHH
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCCccccCCEEEEECCcccccccccceEEEEEECHH-HHHHHHHHHHHhCCCCCHH
Confidence            999999999999999999999887666667899999999999997655467999999855 4455555555566667778


Q ss_pred             hHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC-HHHHHHHHh
Q 021783          160 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVE  238 (307)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  238 (307)
                      .+++...+++.+..+++++.++++.+.++|++++.+..+.+++++++|++.+..++.++.+++++|.+++ .+....+++
T Consensus       299 ~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~  378 (445)
T 1qgn_A          299 AAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVD  378 (445)
T ss_dssp             HHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHH
Confidence            8888889999999999999999999999999998887888999999999988877766788999999965 345889999


Q ss_pred             cCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       239 ~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      .++..++.++.|+.+++..+|...+|..++++.+.+.|..++.||+|+|.+|++++++.|.++++++
T Consensus       379 ~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG~Edid~li~~L~~al~~~  445 (445)
T 1qgn_A          379 ALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDSI  445 (445)
T ss_dssp             HCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCSSCHHHHHHHHHHHHHHC
T ss_pred             hCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence            9998999999999999888898888989999999999999999999999999999999999998753

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=100.00  E-value=2e-41  Score=296.89  Aligned_cols=299  Identities=45%  Similarity=0.728  Sum_probs=266.5

Q ss_pred             cHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            2 AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         2 aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      +|+ .++.+++++||+|++++++|+++...+...++..|++++.++.+|++++++++++++++|++++|+||+|.+.|++
T Consensus        92 ~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~  171 (392)
T 3qhx_A           92 AAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIA  171 (392)
T ss_dssp             HHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred             HHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCCCHHHHHHhhCCCCeEEEEECCCCCCcEEecHH
Confidence            355 4555678999999999999998887776777889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhh
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  160 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (307)
                      +|.++|++||+++|+|++|+.+....+..+++|+++.|+||+++++.++++|+++.+++.+.+.+.......+...++..
T Consensus       172 ~i~~la~~~g~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~  251 (392)
T 3qhx_A          172 GIAQLGADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFD  251 (392)
T ss_dssp             HHHHHHHHHTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHH
T ss_pred             HHHHHHHHcCCEEEEECCCcccccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHH
Confidence            99999999999999999999887667777899999999999996655588999999877777777777777777888889


Q ss_pred             HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC-HHHHHHHHhc
Q 021783          161 CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVET  239 (307)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  239 (307)
                      +++...+++.+..+++++.++++.+.++|+.++.+..+.++++.++|++.++.++.++.+++++|.+.+ .+....+++.
T Consensus       252 ~~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~  331 (392)
T 3qhx_A          252 AYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAK  331 (392)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHh
Confidence            999999999999999999999999999999999998999999999999999988888889999999976 5668999999


Q ss_pred             CCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 021783          240 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  303 (307)
Q Consensus       240 l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  303 (307)
                      ++..++.++.|+.+++.++|...++..++.+   ..|..++.||+|+|.++++++++.|.++|+
T Consensus       332 l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~---~~g~~~~~iRlSvg~e~~~~~i~~l~~al~  392 (392)
T 3qhx_A          332 TNIFILAESLGSVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVGIEDVADLLDDLKQALG  392 (392)
T ss_dssp             CSSSEECSCCCCSSCEEECGGGTSCGGGBTT---BCCCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             CCCceECCCCCCCCceeeCcccccccccCHH---HcCCCCCeEEEEeccCCHHHHHHHHHHHhC
Confidence            9999999999999998888877777665544   677889999999999999999999999874

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=100.00  E-value=1.9e-41  Score=302.02  Aligned_cols=306  Identities=85%  Similarity=1.279  Sum_probs=261.9

Q ss_pred             cHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHH
Q 021783            2 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRK   81 (307)
Q Consensus         2 aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~   81 (307)
                      +|+.+++.++++||+|++++|.|+++...+...++..|++++.++.+|++++++++++++++|++++|+||||.+.|+++
T Consensus       159 ~al~~~l~~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~  238 (464)
T 1ibj_A          159 AALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRK  238 (464)
T ss_dssp             HHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHH
T ss_pred             HHHHHHHHHhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccCceEEEEeCCCCCCCEeecHHH
Confidence            35544455789999999999999988876666788899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhH
Q 021783           82 IAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC  161 (307)
Q Consensus        82 l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (307)
                      |.++|++||+++|+|++|+.|....+..+++|++++|+||+++++.|+++|+++++++.+.+.+.......+...++..+
T Consensus       239 i~~la~~~gi~livDea~~~g~~~~~~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~  318 (464)
T 1ibj_A          239 ISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC  318 (464)
T ss_dssp             HHHHHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHH
T ss_pred             HHHHHHHcCCEEEEECCCcccccCChhhcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHH
Confidence            99999999999999999998765445557899999999999988889899999999766666666665555666777888


Q ss_pred             HHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCC
Q 021783          162 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK  241 (307)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  241 (307)
                      +++..+++....++++..+++..+.+++++++.+..+.++++.++|++++..++.++.+++++|.+++.+....+.+.|+
T Consensus       319 ~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~L~  398 (464)
T 1ibj_A          319 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTK  398 (464)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCS
T ss_pred             HHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCHHHHHHHHHhcC
Confidence            88888888888888888899999999999998888999999999999888866555568899999976555667999999


Q ss_pred             cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcCCC
Q 021783          242 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL  307 (307)
Q Consensus       242 ~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~~~  307 (307)
                      ..||.++.|...++++.|....+...+.+.+...|..++++|+|++.++++++++.|++++++++.
T Consensus       399 ~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~edi~~li~~L~~al~~~~~  464 (464)
T 1ibj_A          399 YFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTFPL  464 (464)
T ss_dssp             SSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCSSCHHHHHHHHHHHHHSCCC
T ss_pred             cceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHhhcCC
Confidence            899999999988888888766666555555555677789999999999999999999999998763

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=100.00  E-value=4.8e-41  Score=295.32  Aligned_cols=303  Identities=44%  Similarity=0.769  Sum_probs=264.4

Q ss_pred             cHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHH
Q 021783            2 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRK   81 (307)
Q Consensus         2 aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~   81 (307)
                      +|+.+++.++++||+|+++++.|+++...+...++..|++++.++.+|++++++++++++++|++++|+||||.+.|+++
T Consensus        93 ~ai~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~  172 (403)
T 3cog_A           93 AATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVWIETPTNPTQKVIDIEG  172 (403)
T ss_dssp             HHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred             HHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHH
Confidence            35533333789999999999999988777766778899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcC-CEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhh
Q 021783           82 IAEMAHAHG-ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  160 (307)
Q Consensus        82 l~~~~~~~~-~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (307)
                      |.++|+++| +++|+|++|+.+....+..+++|+++.|+||+++|++++++|+++++++.+.+.+.......+...++..
T Consensus       173 i~~la~~~g~~~livD~~~~~~~~~~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~  252 (403)
T 3cog_A          173 CAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPID  252 (403)
T ss_dssp             HHHHHTSSSCCEEEEECTTTCTTTCCTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHH
T ss_pred             HHHHHHHcCCCEEEEECCCcccccCCccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHH
Confidence            999999999 9999999999887554555789999999999998888878999999766676666666555666677888


Q ss_pred             HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC-HHHHHHHHhc
Q 021783          161 CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVET  239 (307)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  239 (307)
                      +++...+++.+..+++++.+++..+.+++++++.+.++.+++++++|++++..++.++.+++++|.+++ .+....+++.
T Consensus       253 ~~~~~~~l~~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~l~~  332 (403)
T 3cog_A          253 CYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKN  332 (403)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCHHHHHHHHHh
Confidence            889888999988899999999999999999999999999999999999998877666678999999853 4567788888


Q ss_pred             CCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 021783          240 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  304 (307)
Q Consensus       240 l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  304 (307)
                      ++.....++.|+..++.++|....|...+.+.+...|.+++++|+|++.++.+++++.|.++|++
T Consensus       333 ~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~  397 (403)
T 3cog_A          333 LKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKA  397 (403)
T ss_dssp             CSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             CCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence            87777788999999999999888888888888888898899999999999999999999999864

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=100.00  E-value=3e-41  Score=296.83  Aligned_cols=299  Identities=26%  Similarity=0.466  Sum_probs=254.2

Q ss_pred             cHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            2 AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         2 aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      +|+ .++.+++++||+|+++++.|+++...+...++..|+++++++.+|+++++++++++|++|++++|+||+|.+.|++
T Consensus       108 ~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~le~ai~~~tklV~~e~~~NptG~v~dl~  187 (415)
T 2fq6_A          108 AAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVP  187 (415)
T ss_dssp             HHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGGCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred             HHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhhccCCcEEEEECCCCCCCEeecHH
Confidence            455 4556678999999999999999887777777888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH--cCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCCh
Q 021783           81 KIAEMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP  158 (307)
Q Consensus        81 ~l~~~~~~--~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (307)
                      +|.++|++  +|+++|+|++|+.+....+..+|+|++++|+||+++++.+..+|+++++++ +.+.+.......+..+++
T Consensus       188 ~I~~la~~~~~g~~livD~a~a~~~~~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~-~~~~l~~~~~~~G~~~~~  266 (415)
T 2fq6_A          188 AIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNAR-CWEQLRENAYLMGQMVDA  266 (415)
T ss_dssp             HHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTT-THHHHHHHHHHTTCCCCH
T ss_pred             HHHHHHHhhcCCCEEEEECCCcccccCCccccCCeEEEEeCccccCCCCCceEEEEEeCHH-HHHHHHHHHHhcCCCCCH
Confidence            99999999  999999999999876555667899999999999997665566899999876 445555555545666777


Q ss_pred             hhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC---HHHHHH
Q 021783          159 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS---LALSKH  235 (307)
Q Consensus       159 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  235 (307)
                      ..++....+++.+..++++..++++.+.++|++++.+.++.++++..+|+++++.++.++.+++++|.+++   .+.+..
T Consensus       267 ~~a~~~~~~l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~  346 (415)
T 2fq6_A          267 DTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELAN  346 (415)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHH
Confidence            88888888888889999999999999999999998888888999999999988877666678999999976   566999


Q ss_pred             HHhcCCcceeecCCCCccceeec--ccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          236 VVETTKYFSITVSFGSVKSLISM--PCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       236 ~~~~l~~~gi~v~~g~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      +++.++..++.++.|+.+++..+  |...+|....    .+.|..++.||+|+|+++++++++.|.++|+++
T Consensus       347 ~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~----~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~~  414 (415)
T 2fq6_A          347 YLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQ----GEIDFSGTLIRLHIGLEDVDDLIADLDAGFARI  414 (415)
T ss_dssp             HHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCTT----CCCCCCSCEEEEECCSSCHHHHHHHHHHHHHTT
T ss_pred             HHHhCCcCeEeccCCCCceeEEecCCCccccccch----hhcCCCCCEEEEEecCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999988776  6544432110    135667799999999999999999999999764

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=100.00  E-value=8.9e-40  Score=286.35  Aligned_cols=304  Identities=40%  Similarity=0.700  Sum_probs=260.7

Q ss_pred             cHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            2 AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         2 aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      +|+ .++.+++++||+|++++++|+++...+...++..|++++.++..|++++++.+++++++|++++|+||+|.+.|++
T Consensus        85 ~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~  164 (389)
T 3acz_A           85 GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPNTKMVYLESPANPTCKVSDIK  164 (389)
T ss_dssp             HHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred             HHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCeecCHH
Confidence            345 3444568999999999999998887666667889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhh
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  160 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (307)
                      +|.++|+++|+++|+|++|+.+....+..+++|+++.|+||+++++.+..+|+++++++.+.+.+.......+...++..
T Consensus       165 ~i~~~~~~~~~~livD~~~~~~~~~~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~  244 (389)
T 3acz_A          165 GIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMD  244 (389)
T ss_dssp             HHHHHHHHHTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHH
T ss_pred             HHHHHHHHcCCEEEEECCCccccccCccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHH
Confidence            99999999999999999999877554556789999999999997765433599999973455555555554566677788


Q ss_pred             HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcC
Q 021783          161 CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT  240 (307)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  240 (307)
                      ++....+++.+..++++..++++.+.+++++++.+..+.++++.++|++.++.++.++.+++++|.+++.+....+++.+
T Consensus       245 ~~~~~~~l~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~l~~~  324 (389)
T 3acz_A          245 AFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEHL  324 (389)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSHHHHHHHHTTC
T ss_pred             HHHHHcCccHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECCHHHHHHHHHhC
Confidence            89888999988889999999999999999999989899999999999999887765667899999997655577778777


Q ss_pred             CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       241 ~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      +.....++.|+..++.++|...+|..++.+.+...|..+++||+|++.++++++++.|.++|+++
T Consensus       325 ~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~li~~l~~al~~~  389 (389)
T 3acz_A          325 KVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQALELW  389 (389)
T ss_dssp             SSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHTCC
T ss_pred             CCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence            77667778899999999898888888899989999998999999999999999999999999753

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=100.00  E-value=2.7e-39  Score=284.47  Aligned_cols=301  Identities=37%  Similarity=0.665  Sum_probs=255.3

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHH
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRK   81 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~   81 (307)
                      |+ .++.+++++||+|++++|.|+++...+...++..|++++.+|.+|++++++.+++++++|++++|+||||.+.|+++
T Consensus        89 ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l~~  168 (404)
T 1e5e_A           89 AIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMER  168 (404)
T ss_dssp             HHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred             HHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCcEEEEECCCCCCCcccCHHH
Confidence            45 45556789999999999999998876665778899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-cCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCcee-EEEEEcChhHHHHHHHHHHhc-CCCCCh
Q 021783           82 IAEMAHA-HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA-GVLAVKGERLAKELYFLQNAE-GSGLAP  158 (307)
Q Consensus        82 l~~~~~~-~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~-G~~~~~~~~~~~~~~~~~~~~-~~~~~~  158 (307)
                      |.++|++ +|+++|+|++|+.+....+..+++|+++.|+||+++++ |.++ |+++++++.+.+.+....... +...++
T Consensus       169 i~~la~~~~~~~li~De~~~~~~~~~~~~~~~di~~~S~sK~~~~~-g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~  247 (404)
T 1e5e_A          169 VCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGH-TDVVAGLICGKADLLQQIRMVGIKDITGSVISP  247 (404)
T ss_dssp             HHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCS-SCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCH
T ss_pred             HHHHHHhhcCCEEEEECCCchhhhCCccccCCEEEEEcCccccCCC-CCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCH
Confidence            9999999 99999999999987755455678999999999999654 5565 999998765543444433333 455677


Q ss_pred             hhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH-HHHHHHH
Q 021783          159 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVV  237 (307)
Q Consensus       159 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  237 (307)
                      ..+++...+++.+..++++..++++.+.+++++++.+..+.++.+.++|++++..++.++.++++.|.+++. +....++
T Consensus       248 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l  327 (404)
T 1e5e_A          248 HDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLL  327 (404)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHH
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCCHHHHHHHH
Confidence            788888888988888889999999999999999988888899999999999988776566789999998764 4467777


Q ss_pred             hcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 021783          238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  304 (307)
Q Consensus       238 ~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  304 (307)
                      ++++....++++|...++.++|....|..++.+.+...|.+++++|+|++.++++++++.|++++++
T Consensus       328 ~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~e~~~~li~~l~~al~~  394 (404)
T 1e5e_A          328 DNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDA  394 (404)
T ss_dssp             HTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             HhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence            7777666677889988888988888888888888888888889999999999999999999998864

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=100.00  E-value=1.3e-39  Score=285.30  Aligned_cols=301  Identities=41%  Similarity=0.693  Sum_probs=254.6

Q ss_pred             cHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            2 AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         2 aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      .|+ .++. ++++||+|+++.++|++....+...++..|++++.+|.+| +++++++++++++|++++|+||||.++|++
T Consensus        81 ~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d-~~l~~~i~~~t~lv~~~~~~nptG~~~~l~  158 (393)
T 1n8p_A           81 ATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLL-NDLPQLIKENTKLVWIETPTNPTLKVTDIQ  158 (393)
T ss_dssp             HHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHH-HHHHHHSCSSEEEEEECSSCTTTCCCCCHH
T ss_pred             HHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCCh-HHHHHhcccCceEEEEECCCCCcceecCHH
Confidence            355 4455 7899999999999998777666557788999999999888 999999999999999999999999999999


Q ss_pred             HHHHHHHHc----CCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCcee-EEEEEcChhHHHHHHHHHHhcCCC
Q 021783           81 KIAEMAHAH----GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA-GVLAVKGERLAKELYFLQNAEGSG  155 (307)
Q Consensus        81 ~l~~~~~~~----~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~-G~~~~~~~~~~~~~~~~~~~~~~~  155 (307)
                      +|.++|+++    |+++|+|++|+.+...++..+++|++++|+||++ |++|.+. |+++++++.+.+.+.......+..
T Consensus       159 ~i~~la~~~~~~~~~~livD~a~~~~~~~~~~~~~~di~~~S~sK~~-g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~  237 (393)
T 1n8p_A          159 KVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYI-NGHSDVVLGVLATNNKPLYERLQFLQNAIGAI  237 (393)
T ss_dssp             HHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTT-TCSSCCCCEEEEESCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCccccccCCHHHcCCeEEEEECcccc-cCCCCceeEEEEeCCHHHHHHHHHHHHhcCCC
Confidence            999999999    9999999999977655666678999999999999 5567665 999987565666665555545556


Q ss_pred             CChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCC-ccEEecCCCCCCCchHHHhhhccC-C-CceEEEEeCC-HH
Q 021783          156 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPR-VKKVNYAGLPEHPGHELHYSQAKG-A-GSVLSFLTGS-LA  231 (307)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~-~~  231 (307)
                      .++..++....+++.+..++++..++++.+.++|++++. +..+.++++.+.|++.++.+..++ . +++++|.+++ .+
T Consensus       238 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~  317 (393)
T 1n8p_A          238 PSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAE  317 (393)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHH
T ss_pred             CCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHH
Confidence            677777877788888888999999999999999998876 777778988888888887665444 5 7899999964 45


Q ss_pred             HHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          232 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       232 ~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      ....+++.++..++.++.|+.+++..+|....|..++.+++.+.|..++.||+|+|.++++++++.|.++|+++
T Consensus       318 ~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~  391 (393)
T 1n8p_A          318 AASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             HHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence            68899999999999999999998888888888888887788888988999999999999999999999998753

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=100.00  E-value=3.8e-39  Score=283.31  Aligned_cols=303  Identities=37%  Similarity=0.629  Sum_probs=247.6

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHH
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRK   81 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~   81 (307)
                      |+ .++.+++++||+|++++++|+++...+...++..|++++.++.+|++++++.+++++++|++++|+||||.+.|+++
T Consensus        92 a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~  171 (398)
T 1gc0_A           92 AITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAG  171 (398)
T ss_dssp             HHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCcccccHHH
Confidence            44 45556789999999999999998877766668889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHh-cCCCCChhh
Q 021783           82 IAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-EGSGLAPFD  160 (307)
Q Consensus        82 l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  160 (307)
                      |.++|+++|+++|+|++|+.+....+..+++|+++.|+||+++++.+..+|+++++++.+.+.+...... .+...++..
T Consensus       172 i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (398)
T 1gc0_A          172 VAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHD  251 (398)
T ss_dssp             HHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHH
T ss_pred             HHHHHHHcCCEEEEECCCcccccCCchhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHH
Confidence            9999999999999999999776555556789999999999997665444599999866555445444444 456677788


Q ss_pred             HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH-HHHHHHHhc
Q 021783          161 CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVET  239 (307)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  239 (307)
                      ++....+++.+..+.++..++++.+.++|++++.+..+.++++.++|+++++.++.++.+++++|.+.+. +....+++.
T Consensus       252 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~  331 (398)
T 1gc0_A          252 AALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNA  331 (398)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHH
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCCHHHHHHHHHh
Confidence            8888888998888999999999999999999988888889999999999888766556789999999753 457888888


Q ss_pred             CCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          240 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       240 l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      ++..++.+++|+..++.++|...+|...+.+++...|.+++++|+|++.++++++++.|.++|+++
T Consensus       332 ~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~  397 (398)
T 1gc0_A          332 LQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS  397 (398)
T ss_dssp             CSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             CCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence            888888889999999999998888888999999999999999999999999999999999998753

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=100.00  E-value=2.9e-38  Score=277.72  Aligned_cols=302  Identities=38%  Similarity=0.686  Sum_probs=257.0

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHH
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRK   81 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~   81 (307)
                      |+ .++.+++++||+|++++|+|+++...+...++..|++++.++.+|++++++.+++++++|++++|+||||.+.|+++
T Consensus        91 a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~  170 (398)
T 2rfv_A           91 AITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIET  170 (398)
T ss_dssp             HHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEEESSBTTTTBCCCHHH
T ss_pred             HHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHH
Confidence            44 45556789999999999999998876655567889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCcee-EEEEEcChhHHHHHHHHHHhc-CCCCChh
Q 021783           82 IAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA-GVLAVKGERLAKELYFLQNAE-GSGLAPF  159 (307)
Q Consensus        82 l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~-G~~~~~~~~~~~~~~~~~~~~-~~~~~~~  159 (307)
                      |.++|++||+++|+|++|+.+....+..++.|+++.|+||+++++ |.+. |+++++++.+.+.+....... +...++.
T Consensus       171 i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~-g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (398)
T 2rfv_A          171 VAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGH-GDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPF  249 (398)
T ss_dssp             HHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCS-SCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHH
T ss_pred             HHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEEeCcccccCC-CCceEEEEEECHHHHHHHHHHHHHhCCCCCCCHH
Confidence            999999999999999999988766556678999999999999664 5454 999998765543454444444 5566777


Q ss_pred             hHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH-HHHHHHHh
Q 021783          160 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVE  238 (307)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  238 (307)
                      .++....+++.+..++++..++++.+.+++++++.+..+.++++.++|++++..++.++.+++++|.+++. +....+++
T Consensus       250 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~  329 (398)
T 2rfv_A          250 NAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMIN  329 (398)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHT
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHHHHHHHHH
Confidence            88888888888888888899999999999999988888889999999999888765456789999999753 45788999


Q ss_pred             cCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       239 ~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      .++..|+.+++|..+++.++|....|..++.+++...|..++++|+|++.++.+++++.|.++|+++
T Consensus       330 ~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~  396 (398)
T 2rfv_A          330 SVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA  396 (398)
T ss_dssp             TCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             hCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence            9998999999999988888887777777788888888888999999999999999999999998764

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=100.00  E-value=2.8e-37  Score=273.07  Aligned_cols=302  Identities=33%  Similarity=0.521  Sum_probs=251.4

Q ss_pred             cHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEe-cCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            2 AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV-NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         2 aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      .|+ .++.+++++||+|+++.++|+++...+...++..|++++.+ +.+|++++++++++++++|++++++||+|.+.|+
T Consensus        84 ~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l  163 (421)
T 2ctz_A           84 AAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDL  163 (421)
T ss_dssp             HHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             HHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHhhccCCeEEEEECCCCCCCcccCH
Confidence            345 45555789999999999999998877766567889999999 9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCcc-CCCCcCCccCCCccEEEeccccccccCCCceeEEEEEc-ChhH-----HHH--------
Q 021783           80 RKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVK-GERL-----AKE--------  144 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~-~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~-~~~~-----~~~--------  144 (307)
                      ++|.++|+++|+++|+|++| +.+....+...++|++++|+||+++++.+..+|+++.+ +..+     ...        
T Consensus       164 ~~i~~~a~~~g~~livD~~~~~~g~~~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~  243 (421)
T 2ctz_A          164 EALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYH  243 (421)
T ss_dssp             HHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGT
T ss_pred             HHHHHHHHHcCCEEEEECCcccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhh
Confidence            99999999999999999999 87764455567899999999999976543334555542 2111     010        


Q ss_pred             -------------HHH----HHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCC
Q 021783          145 -------------LYF----LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP  207 (307)
Q Consensus       145 -------------~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~  207 (307)
                                   ...    .....+..+.+..+++...+++.+..+.+++.++++.+.++|++++.+..+.++++...|
T Consensus       244 g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~  323 (421)
T 2ctz_A          244 GLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHP  323 (421)
T ss_dssp             TBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCT
T ss_pred             hhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCC
Confidence                         000    112244567778888988999999888999999999999999999988777789988888


Q ss_pred             chHHHhhhc-cCCCceEEEEeCCH-HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEE
Q 021783          208 GHELHYSQA-KGAGSVLSFLTGSL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS  285 (307)
Q Consensus       208 ~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis  285 (307)
                      ++.++.++. ++.+++++|.+.+. +....+++.++..++.++.|+..++..+|...+|..++.+.+...|..++.||+|
T Consensus       324 ~~~~~~~~~~~~~g~ivsf~l~~~~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS  403 (421)
T 2ctz_A          324 HHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLS  403 (421)
T ss_dssp             THHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEE
T ss_pred             CHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEE
Confidence            888876654 56789999999763 5688999999999999999999998888888899999988889999999999999


Q ss_pred             eccCChHHHHHHHHHHHh
Q 021783          286 VGIEDVNDLISDLDKALR  303 (307)
Q Consensus       286 ~~~~~~~~~i~~l~~~l~  303 (307)
                      ++.+|++++++.|.++|+
T Consensus       404 ~g~e~~~~li~~l~~al~  421 (421)
T 2ctz_A          404 VGLEHVEDLKAELKEALA  421 (421)
T ss_dssp             CCSSCHHHHHHHHHHHTC
T ss_pred             eCCCCHHHHHHHHHHHhC
Confidence            999999999999999874

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=100.00  E-value=1e-36  Score=266.87  Aligned_cols=301  Identities=41%  Similarity=0.612  Sum_probs=247.5

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHH
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRK   81 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~   81 (307)
                      |+ .++..++++||+|+++.++|++....+...++..|++++.++.+|++++++.+++++++|++++++||||.+.|+++
T Consensus        79 a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~  158 (386)
T 1cs1_A           79 AIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAK  158 (386)
T ss_dssp             HHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHH
T ss_pred             HHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhccCCcEEEEeCCCCCCCcccCHHH
Confidence            44 44555689999999999999887766656668899999999999999999999889999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhH
Q 021783           82 IAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC  161 (307)
Q Consensus        82 l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (307)
                      |.++|++||+++|+|++|+.+.......+++|++++|+||+++++.+..+|+++++++.+.+.+.......+...++..+
T Consensus       159 i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  238 (386)
T 1cs1_A          159 ICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDS  238 (386)
T ss_dssp             HHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHH
T ss_pred             HHHHHHHcCCEEEEECCCcccccCCccccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHH
Confidence            99999999999999999998776545567899999999999976654335999998755655555554444555666777


Q ss_pred             HHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCC
Q 021783          162 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK  241 (307)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  241 (307)
                      +....+++.+..+.+...++.+.+.+++++++.+..+.++.+.++|++++..+..++.++++.|.+.+.  ...+.+.+.
T Consensus       239 ~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~  316 (386)
T 1cs1_A          239 YLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD--EQTLRRFLG  316 (386)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC--HHHHHHHHH
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC--HHHHHHHHH
Confidence            777777887888888899999999999999888877888999999999888766566789999998643  344555555


Q ss_pred             cceeecC---CCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          242 YFSITVS---FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       242 ~~gi~v~---~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      ..||.++   +|...++.+.|....+...+.+.+...|..++++|+|++.++++++++.|.++|+++
T Consensus       317 ~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~  383 (386)
T 1cs1_A          317 GLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA  383 (386)
T ss_dssp             TCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             hCCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence            6778776   677777778887777777788888888888899999999999999999999998754

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=100.00  E-value=9.6e-36  Score=262.72  Aligned_cols=300  Identities=33%  Similarity=0.552  Sum_probs=242.2

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHH
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRK   81 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~   81 (307)
                      |+ .++.+++++||+|++++++|+++...+...++..|++++.++.+ ++++++.+++++++|++++++||+|.+.|+++
T Consensus        83 a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~  161 (412)
T 2cb1_A           83 ATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE-PEAVREALSAKTRAVFVETVANPALLVPDLEA  161 (412)
T ss_dssp             HHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS-HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred             HHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-HHHHHHHhccCCeEEEEeCCCCCCcccccHHH
Confidence            44 45556789999999999999888877766678899999999975 99999999999999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCccCCC-CcCCccCCCccEEEeccccccccCCCceeEEEEEcCh---------------------
Q 021783           82 IAEMAHAHGALLLVDNSIMSP-VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE---------------------  139 (307)
Q Consensus        82 l~~~~~~~~~~li~D~a~~~~-~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~---------------------  139 (307)
                      |.++|++||+++|+|++|+.+ ....+...+.|++++|+||+++++.+..+|+++.++.                     
T Consensus       162 i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  241 (412)
T 2cb1_A          162 LATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWE  241 (412)
T ss_dssp             HHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HH
T ss_pred             HHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhh
Confidence            999999999999999999987 4345556789999999999997665434555555533                     


Q ss_pred             -----hHHHHHHHHH-HhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHh
Q 021783          140 -----RLAKELYFLQ-NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  213 (307)
Q Consensus       140 -----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~  213 (307)
                           .+.+.+.... ...+..+.+..+++...+++.+..+.++..++.+.+.+.|.+.+.+..+..++...+|++.++.
T Consensus       242 ~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~  321 (412)
T 2cb1_A          242 ALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNAR  321 (412)
T ss_dssp             HHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHH
Confidence                 1222222222 2234455677888888889888888888889999999999998888778888888889998888


Q ss_pred             hhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHH
Q 021783          214 SQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVND  293 (307)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~  293 (307)
                      +..++.+++++|.+++.+....+++.++... ..+.|...++..+|....|..++.+.+.+.|..++.||+|++.+++++
T Consensus       322 ~~~~~~~~iv~~~~~~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~  400 (412)
T 2cb1_A          322 KYLASGGPILTLDLGDLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLD  400 (412)
T ss_dssp             HHCSSSCSEEEEECSSHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHH
T ss_pred             HhCCCCceEEEEEeCCHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHH
Confidence            7776778999999944444566666665544 556677778778887778888888889999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 021783          294 LISDLDKALRT  304 (307)
Q Consensus       294 ~i~~l~~~l~~  304 (307)
                      +++.|.++|++
T Consensus       401 ~i~~l~~al~~  411 (412)
T 2cb1_A          401 LLALFEEALEA  411 (412)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999999975

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=100.00  E-value=9.4e-37  Score=261.69  Aligned_cols=299  Identities=39%  Similarity=0.654  Sum_probs=239.5

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHH
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRK   81 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~   81 (307)
                      |+ .++.+++++||+|++++++|+++...+...++..|++++.++..|++++++.+++++++|++++++||||.+.|+++
T Consensus        25 a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~  104 (331)
T 1pff_A           25 AIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIED  104 (331)
T ss_dssp             HHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhcCCCeEEEEECCCCCcCcccCHHH
Confidence            44 44455789999999999999988766655456789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-cCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCce-eEEEEEcChhHHHHHHHHHHh-cCCCCCh
Q 021783           82 IAEMAHA-HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVM-AGVLAVKGERLAKELYFLQNA-EGSGLAP  158 (307)
Q Consensus        82 l~~~~~~-~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~-~G~~~~~~~~~~~~~~~~~~~-~~~~~~~  158 (307)
                      |.++|++ +|+++|+|++|+.+....+..+++|++++|+||+++++ |.+ +|+++++++.+.+.+...... .+...++
T Consensus       105 i~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~~~-~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~  183 (331)
T 1pff_A          105 AVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGH-TDVVAGLVCSRADIIAKVKSQGIKDITGAIISP  183 (331)
T ss_dssp             HHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSS-SSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCH
T ss_pred             HHHHHhhhcCCEEEEECCCcccccCChhhcCCcEEEEECccccCCC-CCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCH
Confidence            9999999 99999999999977654344678999999999999665 445 799999863454444443333 3445566


Q ss_pred             hhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHh
Q 021783          159 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVE  238 (307)
Q Consensus       159 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (307)
                      ..++.+..+++.+..+.+...++...+.+++++++.+..+.++.+.+.|+++++.+..++.+++++|.+.+.+   .+.+
T Consensus       184 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  260 (331)
T 1pff_A          184 HDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLE---KAKK  260 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHH---HHHH
T ss_pred             HHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHH---HHHH
Confidence            6677766677767777888888999999999988877788889999999988887665567889999987443   3444


Q ss_pred             cCCccee---ecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          239 TTKYFSI---TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       239 ~l~~~gi---~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      .+...||   .++.|+..++..+|....+..++...+...|.+++++|+|++.++++++++.|.++|+++
T Consensus       261 ~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~  330 (331)
T 1pff_A          261 VLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             HHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred             HHHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence            4545566   556777777777776666767777777888888899999999999999999999999764

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.96  E-value=2.6e-29  Score=218.94  Aligned_cols=257  Identities=16%  Similarity=0.147  Sum_probs=186.0

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++++||+|++++|+|+++.    ..++..|++++.++.+       |++++++++++++++|++++|+||||
T Consensus        93 a~~~~~~~l~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG  168 (375)
T 3op7_A           93 ANLLVLYSLIEPGDHVISLYPTYQQLY----DIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTG  168 (375)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESSCTHHH----HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTC
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCchhHH----HHHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCC
Confidence            44 455667899999999999998887    5567789999998864       89999999999999999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCcC----CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  147 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~----~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~  147 (307)
                      .++|   +++|.++|++||+++|+|++|+.....    .....+.+++++|+||++ +.+|+++|+++++ +.+.+.+..
T Consensus       169 ~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~v~~~-~~l~~~~~~  246 (375)
T 3op7_A          169 AVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTY-SLPGIRIGWVAAN-HQVTDILRD  246 (375)
T ss_dssp             CCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSS-SCGGGCCEEEECC-HHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhc-CCcccceEEEEeC-HHHHHHHHH
Confidence            9999   999999999999999999999864322    112346789999999999 5678899999995 556665555


Q ss_pred             HHHhcCCCCChhhHHHHhhccccHHHH----HHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceE
Q 021783          148 LQNAEGSGLAPFDCWICLRGVKTMALR----VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  223 (307)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  223 (307)
                      .........+...+..+...++.....    .+...++.+.+.+.+++.+.+.. ..+                ..+.+.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~----------------~~~~~~  309 (375)
T 3op7_A          247 YRDYTMICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEEEPLVSY-IRP----------------AVVSTS  309 (375)
T ss_dssp             TGGGTTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEE-CCC----------------SSSSCE
T ss_pred             HHhhhccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhCCCceE-ecC----------------CCeEEE
Confidence            544444455556666665555543322    33335666677777776543311 111                123445


Q ss_pred             EEEeCCHHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHH
Q 021783          224 SFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDK  300 (307)
Q Consensus       224 ~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~  300 (307)
                      ++.++......++.+.+ +++||.+.+|..+.                       .++++|++++.  +++++.++.|.+
T Consensus       310 ~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~-----------------------~~~~iRi~~~~~~~~i~~~l~~l~~  366 (375)
T 3op7_A          310 FVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFE-----------------------RDGYVRLGFACEQETLIKGLEKLSQ  366 (375)
T ss_dssp             EEEECCSSCHHHHHHHHHHHHCEECEEGGGGT-----------------------CTTEEEECCCSCHHHHHHHHHHHHH
T ss_pred             eEEcCCCCCHHHHHHHHHHhCCEEEeChhhhC-----------------------CCCeEEEEecCCHHHHHHHHHHHHH
Confidence            55554333356676666 67899988776532                       14679999986  578888888888


Q ss_pred             HHhcC
Q 021783          301 ALRTG  305 (307)
Q Consensus       301 ~l~~~  305 (307)
                      +++++
T Consensus       367 ~l~~~  371 (375)
T 3op7_A          367 FLRRF  371 (375)
T ss_dssp             HHGGG
T ss_pred             HHHHH
Confidence            88764

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.96  E-value=2.8e-28  Score=213.24  Aligned_cols=239  Identities=19%  Similarity=0.201  Sum_probs=166.7

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.++++|||+|++++|+|+++.    ..++..|++++.++.+       |++++++++++++++|++++|+||||
T Consensus       103 al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG  178 (385)
T 1b5p_A          103 ALFNLFQAILDPGDEVIVLSPYWVSYP----EMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTG  178 (385)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTHHH----HHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTC
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCchhHH----HHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCCCCCC
Confidence            45 455567899999999999998877    5567789999999873       68899999988899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCc----CCccCC--CccEEEeccccccccCCCceeEEEEEcChhHHHHH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVL----SRPLEL--GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  145 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~----~~~~~~--~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~  145 (307)
                      .+++   +++|+++|++||+++|+|++|+....    .....+  +.+++++|+||++ |++|+|+|+++++++ +.+.+
T Consensus       179 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RiG~~~~~~~-~~~~l  256 (385)
T 1b5p_A          179 AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAF-AMTGWRIGYACGPKE-VIKAM  256 (385)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTT-TCGGGCCEEEECCHH-HHHHH
T ss_pred             CCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhc-CCcccceEEEEeCHH-HHHHH
Confidence            9976   89999999999999999999985432    122222  6789999999999 667999999999754 55555


Q ss_pred             HHHHHhcCCCCChhhHHHHhhcccc-------HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          146 YFLQNAEGSGLAPFDCWICLRGVKT-------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      ...........+...+..+...++.       ++...+.+.++.+.+.+.|++. ++        .-.        . ..
T Consensus       257 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~--------~~~--------~-~~  318 (385)
T 1b5p_A          257 ASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GL--------KAV--------R-PS  318 (385)
T ss_dssp             HHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TC--------CBC--------C-CS
T ss_pred             HHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CC--------eec--------C-CC
Confidence            5444443334455555544444432       2333444455555666666543 11        100        0 11


Q ss_pred             CCceEEEEeCC-HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc
Q 021783          219 AGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  288 (307)
Q Consensus       219 ~~~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~  288 (307)
                      .+.++++.+.. ..+..++.+.|..+||.++.|..|.                      . ++++|||++.
T Consensus       319 ~~~~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~----------------------~-~~~iRis~~~  366 (385)
T 1b5p_A          319 GAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFA----------------------A-FGHVRLSYAT  366 (385)
T ss_dssp             BTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGT----------------------C-TTEEEEECCS
T ss_pred             eeEEEEEecCCCCCCHHHHHHHHHHCCeEEecccccC----------------------C-CCeEEEEecC
Confidence            23445556641 1136677777778899998887632                      1 4579999984

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.96  E-value=4.7e-28  Score=210.65  Aligned_cols=252  Identities=13%  Similarity=0.168  Sum_probs=180.4

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHH
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRK   81 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~   81 (307)
                      |+ .++.+++++||+|++++|+|+++.    ..++..|++++.++ .|++++++.+++++++|++++|+||||.+++.+ 
T Consensus       101 a~~~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~v~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~-  174 (370)
T 2z61_A          101 GLFFALSSIIDDGDEVLIQNPCYPCYK----NFIRFLGAKPVFCD-FTVESLEEALSDKTKAIIINSPSNPLGEVIDRE-  174 (370)
T ss_dssp             HHHHHHHHHCCTTCEEEEESSCCTHHH----HHHHHTTCEEEEEC-SSHHHHHHHCCSSEEEEEEESSCTTTCCCCCHH-
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCchhHH----HHHHHcCCEEEEeC-CCHHHHHHhcccCceEEEEcCCCCCcCcccCHH-
Confidence            44 445557899999999999999887    55677899999999 799999999988899999999999999999999 


Q ss_pred             HHHHHHHcCCEEEEeCccCCCCcC----Ccc----CCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcC
Q 021783           82 IAEMAHAHGALLLVDNSIMSPVLS----RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  153 (307)
Q Consensus        82 l~~~~~~~~~~li~D~a~~~~~~~----~~~----~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~  153 (307)
                      |.++|++||+++|+|++|+.+...    ...    ..+.|++++|+||++ |++|+|+|++++++ .+.+.+........
T Consensus       175 l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~-~~~~~~~~~~~~~~  252 (370)
T 2z61_A          175 IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLY-AMTGWRIGYVISND-EIIEAILKLQQNLF  252 (370)
T ss_dssp             HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTT-TCGGGCCEEEECCH-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhcc-CCccceEEEEEECH-HHHHHHHHHHhhcc
Confidence            999999999999999999865431    222    237899999999999 66789999999986 45555555544444


Q ss_pred             CCCChhhHHHHhhcccc-H----HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC
Q 021783          154 SGLAPFDCWICLRGVKT-M----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  228 (307)
Q Consensus       154 ~~~~~~~~~~~~~~l~~-~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  228 (307)
                      ...+...+..+...++. .    +...+...++.+.+.+.|++. ++.   .     .        . ...+.++++.++
T Consensus       253 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~---~-----~--------~-~~~~~~~~~~~~  314 (370)
T 2z61_A          253 ISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GWE---V-----N--------N-PIGAYYVFPNIG  314 (370)
T ss_dssp             SSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCB---C-----C--------C-CCBTTEECCBCS
T ss_pred             cCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CCe---e-----c--------C-CCcceEEEEecC
Confidence            45566666666666654 2    223444455566666666643 110   0     0        0 112344555665


Q ss_pred             CHHHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHh
Q 021783          229 SLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALR  303 (307)
Q Consensus       229 ~~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~  303 (307)
                      .  +...+.+.|. .+||.++.|..|..                     ..++++|+|++.  +++++.++.|.++++
T Consensus       315 ~--~~~~~~~~l~~~~gi~v~~g~~f~~---------------------~~~~~~Ri~~~~~~~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          315 E--DGREFAYKLLKEKFVALTPGIGFGS---------------------KGKNYIRISYANSYENIKEGLERIKEFLN  369 (370)
T ss_dssp             S--CHHHHHHHHHHHHCEECEEGGGGCG---------------------GGSSBEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred             C--CHHHHHHHHHHhCCEEEeCchhhCC---------------------CCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            4  3667778776 68999988765321                     025679999984  455666666666654

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.96  E-value=9.3e-28  Score=210.16  Aligned_cols=260  Identities=18%  Similarity=0.169  Sum_probs=185.7

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC--------CChHHHHhhcC-CCceEEEEeCCCCC
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIG-PWTKLVWVESPTNP   72 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~--------~d~~~l~~~l~-~~~~~v~~~~~~n~   72 (307)
                      |+ .++.+++++||+|+++.|+|.++.    ..++..|++++.++.        .|+++++++++ +++++|++++|+||
T Consensus        97 a~~~~~~~l~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~np  172 (391)
T 3dzz_A           97 AISAMVRQFTSPGDQILVQEPVYNMFY----SVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNP  172 (391)
T ss_dssp             HHHHHHHHHSCTTCEEEECSSCCHHHH----HHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTT
T ss_pred             HHHHHHHHhCCCCCeEEECCCCcHHHH----HHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCC
Confidence            45 455567899999999999998887    556778999999987        48999999998 79999999999999


Q ss_pred             cccc---ccHHHHHHHHHHcCCEEEEeCccCCCCc-----CCccCC-----CccEEEeccccccccCCCceeEEEEEcCh
Q 021783           73 RQQI---CDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLEL-----GADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        73 tG~~---~~~~~l~~~~~~~~~~li~D~a~~~~~~-----~~~~~~-----~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      ||.+   .++++|.++|++||+++|+|++|+....     ......     +.+++++|+||++ |.+|+++|+++++++
T Consensus       173 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~-g~~G~r~G~~~~~~~  251 (391)
T 3dzz_A          173 IGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTF-NLAALHAACAIIPNP  251 (391)
T ss_dssp             TTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHH-TCTTTCCEEEECCSH
T ss_pred             CCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhc-cccchhheEEEECCH
Confidence            9999   4699999999999999999999984322     122222     2349999999999 667889999999866


Q ss_pred             hHHHHHHHHHHh-cCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhc-CCCccEEecCCCCCCCchHHHh
Q 021783          140 RLAKELYFLQNA-EGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHY  213 (307)
Q Consensus       140 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~l~~~~~~~~~~  213 (307)
                      .+.+.+...... .....+...+..+...++.    ++...+...++.+.+.+.+++ .+++. +..             
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~-------------  317 (391)
T 3dzz_A          252 DLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPEVK-VLD-------------  317 (391)
T ss_dssp             HHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSE-ECC-------------
T ss_pred             HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCcE-Eec-------------
Confidence            666666555432 2233444444444444332    444556666777777777776 44331 111             


Q ss_pred             hhccCCCceEEEEeCCH-HHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--C
Q 021783          214 SQAKGAGSVLSFLTGSL-ALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--E  289 (307)
Q Consensus       214 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~  289 (307)
                         ...+.++++.++.. .....+.+.| +++||.++.|..|..                     ..++++|+|++.  +
T Consensus       318 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---------------------~~~~~iRis~~~~~~  373 (391)
T 3dzz_A          318 ---SNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRG---------------------NGHEFVRINLACPKE  373 (391)
T ss_dssp             ---CCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCT---------------------TGGGEEEEECCSCHH
T ss_pred             ---cCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCC---------------------CCCCEEEEEecCCHH
Confidence               11234455666532 2367788888 478999998876331                     125679999985  6


Q ss_pred             ChHHHHHHHHHHHhcC
Q 021783          290 DVNDLISDLDKALRTG  305 (307)
Q Consensus       290 ~~~~~i~~l~~~l~~~  305 (307)
                      ++++.++.|.++++++
T Consensus       374 ~i~~~l~~l~~~l~~~  389 (391)
T 3dzz_A          374 LVIDGMQRLKQGVLNL  389 (391)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            7788888888888765

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.96  E-value=2.7e-28  Score=211.59  Aligned_cols=248  Identities=17%  Similarity=0.238  Sum_probs=180.3

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCcccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQI   76 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~   76 (307)
                      |+ .++.+++++||+|++++|+|+++.    ..++..|++++.++.+     |++++++.+++++++|++++|+||||.+
T Consensus        96 a~~~~~~~~~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~  171 (363)
T 3ffh_A           96 LIELLTRVLLDTTTNTVMATPTFVQYR----QNALIEGAEVREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNY  171 (363)
T ss_dssp             HHHHHHHHHCSTTCEEEEEESSCHHHH----HHHHHHTCEEEEEECCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred             HHHHHHHHHccCCCEEEEcCCChHHHH----HHHHHcCCEEEEecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcCCC
Confidence            44 445567899999999999998877    5567789999999987     9999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHc--CCEEEEeCccCCCC-------cCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH
Q 021783           77 CDIRKIAEMAHAH--GALLLVDNSIMSPV-------LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  147 (307)
Q Consensus        77 ~~~~~l~~~~~~~--~~~li~D~a~~~~~-------~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~  147 (307)
                      +|.+++.++++.+  |+++|+|++|+...       .......+.+++++|+||++ |++|+|+|+++++++ +.+.+..
T Consensus       172 ~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~-~~~~l~~  249 (363)
T 3ffh_A          172 IELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIY-GLASARVGYGIADKE-IIRQLNI  249 (363)
T ss_dssp             CCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTT-CCSSCCCEEEEECHH-HHHHHHH
T ss_pred             cCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhh-cCchhceeeeecCHH-HHHHHHH
Confidence            9999999999888  99999999998322       11222346779999999999 677989999999644 4444433


Q ss_pred             HHHhcCCCCChhhHHHHhhccc---cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEE
Q 021783          148 LQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  224 (307)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  224 (307)
                      ...  ....+...++.+...++   .+....+...++.+.+.+.+++..++. + .                +..+++++
T Consensus       250 ~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~-~----------------~~~~~~~~  309 (363)
T 3ffh_A          250 VRP--PFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVK-L-Y----------------PANGNFVL  309 (363)
T ss_dssp             TCC--SCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTCE-E-C----------------CCCSSEEE
T ss_pred             hCC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCCce-E-C----------------CCCCeEEE
Confidence            322  23445555555555553   334455666667777777777643321 1 1                11356778


Q ss_pred             EEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHH
Q 021783          225 FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKA  301 (307)
Q Consensus       225 ~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~  301 (307)
                      +.++.  +...+.+.|..+||.++.|..+.                       .++++|+|++. ++++++++.|+++
T Consensus       310 ~~~~~--~~~~~~~~l~~~gi~v~~g~~~~-----------------------~~~~iRis~~~~~~i~~~~~~l~~~  362 (363)
T 3ffh_A          310 IDLGI--EAGTIFSYLEKNGYITRSGAALG-----------------------FPTAVRITIGKEEDNSAVIALLEKL  362 (363)
T ss_dssp             EECSS--CHHHHHHHHHHTTEECEETTTTT-----------------------CTTEEEEECCCHHHHHHHHHHHHHH
T ss_pred             EECCC--CHHHHHHHHHHCCeEEEeCccCC-----------------------CCCeEEEECCCHHHHHHHHHHHHHh
Confidence            88864  36778888888899998877522                       15679999984 4566666666554

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.96  E-value=1.4e-27  Score=209.51  Aligned_cols=255  Identities=15%  Similarity=0.136  Sum_probs=185.6

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCC------CceEEEEeCCCCCcccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP------WTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~   78 (307)
                      .++.+++++||+|+++.|+|+++.    ..++..|++++.++..|++++++.+++      ++++|++++++||||.+.|
T Consensus       118 ~~l~~~~~~gd~v~~~~~~~~~~~----~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~  193 (399)
T 3tqx_A          118 GLFETLLGPEDAIISDELNHASII----DGIRLCKAQRYRYKNNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD  193 (399)
T ss_dssp             TTHHHHCCTTCEEEEETTCCHHHH----HHHHSCCSEEEEECTTCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC
T ss_pred             HHHHHhcCCCCEEEECCcccHHHH----HHHHHcCCceeEeCCCCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC
Confidence            455567899999999999999887    567788999999999999999998874      8999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcC-C----cc----CCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH-
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLS-R----PL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-  148 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~-~----~~----~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~-  148 (307)
                      +++|.++|++||+++|+|++|+.+... .    ..    ..+.|++++|+||+++|++   +|+++++++ +.+.+... 
T Consensus       194 l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~---gG~~~~~~~-~~~~~~~~~  269 (399)
T 3tqx_A          194 LKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGAS---GGYTSGHKE-IIEWLRNRS  269 (399)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSC---CEEEEECHH-HHHHHHHHC
T ss_pred             HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCc---eEEEEcCHH-HHHHHHHhC
Confidence            999999999999999999999765432 1    11    1257999999999996455   599998865 44444332 


Q ss_pred             HHh-cCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceE
Q 021783          149 QNA-EGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  223 (307)
Q Consensus       149 ~~~-~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  223 (307)
                      ... ..+..++.........++.    .....+...++.+.+.+.|++..         +.-.          ...++++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~~~----------~~~~~~~  330 (399)
T 3tqx_A          270 RPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKLG---------FQLV----------PGNHPII  330 (399)
T ss_dssp             HHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT---------CCBC----------CCSSSEE
T ss_pred             cceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC---------CCcC----------CCCCCEE
Confidence            222 2334555554444444443    34445556666667777776531         1100          1246788


Q ss_pred             EEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHH
Q 021783          224 SFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLD  299 (307)
Q Consensus       224 ~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~  299 (307)
                      ++.+++......+.+.|..+||.++.+....                    ....++++|++++.    +++++.++.|.
T Consensus       331 ~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~--------------------~~~~~~~iRi~~~~~~~~~~i~~~~~~l~  390 (399)
T 3tqx_A          331 PVMLGDAQLATNMADHLLQEGIYVVGFSYPV--------------------VPMGKARIRVQMSAVHTQQQLDRAIEAFG  390 (399)
T ss_dssp             EEEEECHHHHHHHHHHHHHTTEECCEECTTT--------------------SCTTCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             EEEeCCHHHHHHHHHHHHHCCCEEeeeCCCC--------------------CCCCCceEEEEeecCCCHHHHHHHHHHHH
Confidence            8888776668888888888899887543211                    01135689999973    78888888888


Q ss_pred             HHHhcCC
Q 021783          300 KALRTGP  306 (307)
Q Consensus       300 ~~l~~~~  306 (307)
                      +++++++
T Consensus       391 ~~~~~~~  397 (399)
T 3tqx_A          391 QVGKKLG  397 (399)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhc
Confidence            8888765

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.96  E-value=1.4e-28  Score=213.50  Aligned_cols=248  Identities=13%  Similarity=0.201  Sum_probs=181.5

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-----CChHHHHhhcCCCceEEEEeCCCCCcccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGPWTKLVWVESPTNPRQQI   76 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~~v~~~~~~n~tG~~   76 (307)
                      |+ .++.+++++||+|+++.|+|.++.    ..++..|++++.++.     .|++++++++++++++|++++|+||||.+
T Consensus        94 a~~~~~~~l~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~  169 (365)
T 3get_A           94 VIEFAIHSKLNSKNAFLQAGVTFAMYE----IYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCLPNNPLGEC  169 (365)
T ss_dssp             HHHHHHHHHCCTTCEEEECSSCCTHHH----HHHHHHTCEEEECSSSSCCHHHHHHHHHHTTTTEEEEEEESSCTTTCCC
T ss_pred             HHHHHHHHHhCCCCEEEEeCCChHHHH----HHHHHcCCEEEEEecCCCCCCCHHHHHHHhCCCCCEEEEcCCCCCCCCC
Confidence            45 455567899999999999998887    556778999999997     46889999999999999999999999999


Q ss_pred             ccHHHHHHHHH--HcCCEEEEeCccCCCC------c-CC----ccCCCccEEEeccccccccCCCceeEEEEEcChhHHH
Q 021783           77 CDIRKIAEMAH--AHGALLLVDNSIMSPV------L-SR----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        77 ~~~~~l~~~~~--~~~~~li~D~a~~~~~------~-~~----~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~  143 (307)
                      +|.+++.++++  ++|+++|+|++|+...      . ..    ....+.+++++|+||++ |.+|+++|+++++ +.+.+
T Consensus       170 ~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~  247 (365)
T 3get_A          170 LDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLY-GLGGLRIGYGIAN-ANIIS  247 (365)
T ss_dssp             CCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTT-SCTTTCCEEEEEC-HHHHH
T ss_pred             cCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHh-cCcchheEEEEcC-HHHHH
Confidence            99888888888  6799999999997222      1 11    12346889999999999 6678899999996 44555


Q ss_pred             HHHHHHHhcCCCCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCC
Q 021783          144 ELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG  220 (307)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  220 (307)
                      .+......  ...+...+..+...++.   +....+...++.+.+.+.+++. ++ .+ .                ...+
T Consensus       248 ~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~-~~-~----------------~~~~  306 (365)
T 3get_A          248 AFYKLRAP--FNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH-NI-KI-I----------------DSYT  306 (365)
T ss_dssp             HHHHHSCT--TCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TC-EE-C----------------CCSS
T ss_pred             HHHHhcCC--CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CC-EE-C----------------CCCC
Confidence            44443322  23455555555555543   4455566667777777777765 22 11 1                1135


Q ss_pred             ceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHH
Q 021783          221 SVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLD  299 (307)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~  299 (307)
                      +++++.+++. ....+.+.|..+||.++.|..+                      +  ++++|+|++. ++++++++.|+
T Consensus       307 ~~~~~~~~~~-~~~~~~~~l~~~gi~v~~g~~~----------------------~--~~~iRis~~~~~~i~~l~~~l~  361 (365)
T 3get_A          307 NFITYFFDEK-NSTDLSEKLLKKGIIIRNLKSY----------------------G--LNAIRITIGTSYENEKFFTEFD  361 (365)
T ss_dssp             SEEEEECSSS-CHHHHHHHHHTTTEECEECGGG----------------------T--CSEEEEECCCHHHHHHHHHHHH
T ss_pred             eEEEEECCCC-CHHHHHHHHHHCCEEEEECccC----------------------C--CCEEEEEcCCHHHHHHHHHHHH
Confidence            6778888654 4778888888889999887652                      2  4579999985 57777777777


Q ss_pred             HHH
Q 021783          300 KAL  302 (307)
Q Consensus       300 ~~l  302 (307)
                      +++
T Consensus       362 ~~l  364 (365)
T 3get_A          362 KIL  364 (365)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            665

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.96  E-value=6.1e-28  Score=212.48  Aligned_cols=259  Identities=17%  Similarity=0.128  Sum_probs=186.1

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-----------CChHHHHhhcCCCceEEEEeCCC
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----------CDLDEVASAIGPWTKLVWVESPT   70 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----------~d~~~l~~~l~~~~~~v~~~~~~   70 (307)
                      |+ .++.+++++||+|+++.|+|.++.    ..++..|++++.++.           .|++++++.+++++++|++++|+
T Consensus       114 a~~~~~~~l~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~  189 (407)
T 3nra_A          114 ALFLAVAATVARGDKVAIVQPDYFANR----KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPN  189 (407)
T ss_dssp             HHHHHHHTTCCTTCEEEEEESCCTHHH----HHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSC
T ss_pred             HHHHHHHHhCCCCCEEEEcCCcccchH----HHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCC
Confidence            44 445567899999999999998877    667788999999987           18999999998889999999999


Q ss_pred             CCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-----Cc-----cCCCccEEEeccccccccCCCceeEEEEEc
Q 021783           71 NPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RP-----LELGADIVMHSATKFIAGHSDVMAGVLAVK  137 (307)
Q Consensus        71 n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~-----~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~  137 (307)
                      ||||.+++   +++|+++|++||+++|+|++|+.+...     ..     ...+.+++++|+||++ |.+|+++|+++++
T Consensus       190 nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~  268 (407)
T 3nra_A          190 NPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTE-SLSGYRLGVAFGS  268 (407)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTT-CCGGGCCEEEEEC
T ss_pred             CCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCccccc-CCCeeeEEEEEcC
Confidence            99999998   999999999999999999999853221     11     2356789999999999 6678899999987


Q ss_pred             ChhHHHHHHHHHHhcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHh
Q 021783          138 GERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  213 (307)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~  213 (307)
                      + .+.+.+...........+...+..+...++.    +....++..++.+.+.+.+++.+.+..        .       
T Consensus       269 ~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--------~-------  332 (407)
T 3nra_A          269 R-AIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFA--------R-------  332 (407)
T ss_dssp             H-HHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBC--------C-------
T ss_pred             H-HHHHHHHHHHhhhccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcCCCcee--------c-------
Confidence            4 4555555555444444455555555554432    455566667777778877776532211        0       


Q ss_pred             hhccCCCceEEEEeCC-HHHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--C
Q 021783          214 SQAKGAGSVLSFLTGS-LALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--E  289 (307)
Q Consensus       214 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~  289 (307)
                       . ...+.++++.++. ......+.+.|. .+||.++.|..+..                     ..++++|||++.  +
T Consensus       333 -~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---------------------~~~~~iRis~~~~~~  389 (407)
T 3nra_A          333 -T-PQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSP---------------------HTADSVRLNFSQDHE  389 (407)
T ss_dssp             -C-CSBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCT---------------------TCTTBEEEECCSCHH
T ss_pred             -c-CCeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCC---------------------CCCCEEEEEeCCCHH
Confidence             0 1123555566643 223667777775 45999988776331                     135789999986  5


Q ss_pred             ChHHHHHHHHHHHhcC
Q 021783          290 DVNDLISDLDKALRTG  305 (307)
Q Consensus       290 ~~~~~i~~l~~~l~~~  305 (307)
                      ++++.++.|.++++++
T Consensus       390 ~i~~~~~~l~~~~~~~  405 (407)
T 3nra_A          390 AAVAAARRIVTLVERY  405 (407)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            6777788888777653

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.96  E-value=2.1e-27  Score=210.36  Aligned_cols=261  Identities=14%  Similarity=0.147  Sum_probs=178.4

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcC------------CCceEEE
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIG------------PWTKLVW   65 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~------------~~~~~v~   65 (307)
                      |+ .++.++++|||+|++++|+|+++.    ..++..|++++.++.+    |++++++.++            +++++|+
T Consensus       120 al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~  195 (425)
T 2r2n_A          120 GLCKVFEMIINPGDNVLLDEPAYSGTL----QSLHPLGCNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLY  195 (425)
T ss_dssp             HHHHHHHHHCCTTCEEEEESSCCHHHH----HHHGGGTCEEEEECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEE
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCcHHHH----HHHHHcCCEEEEeCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEE
Confidence            45 455567899999999999998887    5567889999999873    7899999886            4688887


Q ss_pred             E-eCCCCCcccccc---HHHHHHHHHHcCCEEEEeCccCC----CCc-C---CccCCCccEEEeccccccccCCCceeEE
Q 021783           66 V-ESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS----PVL-S---RPLELGADIVMHSATKFIAGHSDVMAGV  133 (307)
Q Consensus        66 ~-~~~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~----~~~-~---~~~~~~~d~~~~s~~K~~~g~~g~~~G~  133 (307)
                      + ++++||||.+++   +++|+++|++||+++|+|++|+.    +.. .   .....+.+++++|+||++ + +|+|+||
T Consensus       196 ~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~-~-~GlRiG~  273 (425)
T 2r2n_A          196 TVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKII-S-SGLRIGF  273 (425)
T ss_dssp             ECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTT-C-STTCCEE
T ss_pred             ECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhc-c-CccceEE
Confidence            6 589999999997   55999999999999999999973    211 1   122345789999999999 5 7999999


Q ss_pred             EEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhcccc---------HHHHHHHHHHHHHHHHHHHhcC-CCccEEecCCC
Q 021783          134 LAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---------MALRVEKQQDNAQKIAEFLASH-PRVKKVNYAGL  203 (307)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~l  203 (307)
                      ++++++ +.+.+...........+...+..+...++.         +....+.+.++.+.+.+.+++. +++..+..   
T Consensus       274 ~~~~~~-l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~---  349 (425)
T 2r2n_A          274 LTGPKP-LIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHV---  349 (425)
T ss_dssp             EEEEHH-HHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECC---
T ss_pred             EecCHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeC---
Confidence            999855 555555555444445555555555555443         1222233344555555556542 22211111   


Q ss_pred             CCCCchHHHhhhccCCCceEEEEeCCHHHHHH-HHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeE
Q 021783          204 PEHPGHELHYSQAKGAGSVLSFLTGSLALSKH-VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLV  282 (307)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i  282 (307)
                                   ...+.++++.+++..+... +.+.+.++||.+++|..|...                  ....++++
T Consensus       350 -------------p~~g~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~------------------~~~~~~~i  398 (425)
T 2r2n_A          350 -------------PAAGMFLWIKVKGINDVKELIEEKAVKMGVLMLPGNAFYVD------------------SSAPSPYL  398 (425)
T ss_dssp             -------------CSBSSEEEEEETTCSCCHHHHHTHHHHTTEECEEGGGGSSS------------------TTSCCCEE
T ss_pred             -------------CCceEEEEEEeCCCCCHHHHHHHHHHHCCcEEechhhhcCC------------------CCCCCCEE
Confidence                         1246677888864222333 567777889999888764310                  01135789


Q ss_pred             EEEecc---CChHHHHHHHHHHHhc
Q 021783          283 RISVGI---EDVNDLISDLDKALRT  304 (307)
Q Consensus       283 Ris~~~---~~~~~~i~~l~~~l~~  304 (307)
                      |||++.   +++++.++.|.+++++
T Consensus       399 Ris~~~~~~~~i~~~~~~l~~~l~~  423 (425)
T 2r2n_A          399 RASFSSASPEQMDVAFQVLAQLIKE  423 (425)
T ss_dssp             EEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            999973   6788888888887754

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.96  E-value=1.4e-27  Score=209.12  Aligned_cols=252  Identities=19%  Similarity=0.205  Sum_probs=179.6

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++++||+|++++|+|+++.    ..++..|++++.+|.+       |++++++.+++++++|++++|+||||
T Consensus       113 al~~~~~~l~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG  188 (389)
T 1o4s_A          113 ALFNAFMALLDPGDEVIVFSPVWVSYI----PQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTG  188 (389)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTC
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCchhHH----HHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCCCCCCC
Confidence            44 445557899999999999999887    5567789999999864       78999999988899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCcC----CccC----CCccEEEeccccccccCCCceeEEEEEcChhHHH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~----~~~~----~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~  143 (307)
                      .+++   +++|.++|+++|+++|+|++|+.+...    ....    .+.|++++|+||++ |++|+|+|+++++++ +.+
T Consensus       189 ~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~l~~~~~-~~~  266 (389)
T 1o4s_A          189 VVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSH-SMTGWRVGYLISSEK-VAT  266 (389)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTT-TCGGGCCEEEECCHH-HHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhc-CCcccceEEEEeCHH-HHH
Confidence            9987   999999999999999999999865431    1111    47899999999999 667899999999754 555


Q ss_pred             HHHHHHHhcCCCCChhhHHHHhhcccc-HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCce
Q 021783          144 ELYFLQNAEGSGLAPFDCWICLRGVKT-MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV  222 (307)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  222 (307)
                      .+...........+...+..+...++. +....+...++.+.+.+.|++. ++        .-.        . ...+.+
T Consensus       267 ~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~l~~~L~~~-g~--------~~~--------~-~~~~~~  328 (389)
T 1o4s_A          267 AVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKM-GV--------KFV--------E-PEGAFY  328 (389)
T ss_dssp             HHHHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHT-TC--------CCC--------C-CSBSSE
T ss_pred             HHHHHhhhcccCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc-CC--------eee--------c-CCcceE
Confidence            555444433344455555555444432 3444566667777777777654 11        100        0 112445


Q ss_pred             EEEEeCCHHHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHHHHH
Q 021783          223 LSFLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLD  299 (307)
Q Consensus       223 ~~~~~~~~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~  299 (307)
                      +++.++  .+..++.+.|. .+||.+++|..|.                       .++++|+|++.  +++++.++.|.
T Consensus       329 ~~~~~~--~~~~~l~~~l~~~~gi~v~~g~~f~-----------------------~~~~~Ris~~~~~~~l~~~l~~l~  383 (389)
T 1o4s_A          329 LFFKVR--GDDVKFCERLLEEKKVALVPGSAFL-----------------------KPGFVRLSFATSIERLTEALDRIE  383 (389)
T ss_dssp             EEEECS--SCHHHHHHHHHHHHCEECEEGGGGT-----------------------CTTEEEEECCSCHHHHHHHHHHHH
T ss_pred             EEEeCC--CCHHHHHHHHHHHCCEEEeCchhcC-----------------------CCCeEEEEEeCCHHHHHHHHHHHH
Confidence            566665  23567777775 7899888776522                       13579999985  55666666666


Q ss_pred             HHHh
Q 021783          300 KALR  303 (307)
Q Consensus       300 ~~l~  303 (307)
                      ++++
T Consensus       384 ~~l~  387 (389)
T 1o4s_A          384 DFLN  387 (389)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            6664

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.96  E-value=3.1e-27  Score=206.45  Aligned_cols=259  Identities=14%  Similarity=0.134  Sum_probs=183.7

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-----CChHHHHhhc--CCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAI--GPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l--~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++++||+|++++|+|++..  +...++..|++++.++.     .|++++++++  .+++++|++++++||||
T Consensus        83 a~~~~~~~l~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG  160 (386)
T 2dr1_A           83 IMEASIRNGVSKGGKVLVTIIGAFGKR--YKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTG  160 (386)
T ss_dssp             HHHHHHHHHSCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTT
T ss_pred             HHHHHHHHhhcCCCeEEEEcCCchhHH--HHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcc
Confidence            44 455557899999999999998731  22566778999999987     4899999999  57899999999999999


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHH--------
Q 021783           75 QICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL--------  145 (307)
Q Consensus        75 ~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~--------  145 (307)
                      .+.|+++|.++|++||+++|+|++|+.+..+ ....+++|++++|+||+++++.|  +|+++++++.. +.+        
T Consensus       161 ~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g--~G~~~~~~~~~-~~~~~~~~~~~  237 (386)
T 2dr1_A          161 VLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPG--LAIGAFSERFL-EIAEKMPERGW  237 (386)
T ss_dssp             EECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSS--CEEEEECHHHH-HHHTTCTTCCS
T ss_pred             hhCCHHHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEeccccccCCCc--eEEEEECHHHH-HHHhcCCCCce
Confidence            9999999999999999999999999977654 55566899999999999977666  89999986533 322        


Q ss_pred             --------HHHH--HhcCCCCChhhHHHHhhcccc------HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCch
Q 021783          146 --------YFLQ--NAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGH  209 (307)
Q Consensus       146 --------~~~~--~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~  209 (307)
                              ....  .....+.+...+..+..+++.      +....++..++.+.+.+.|++. ++. +..+        
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~--------  307 (386)
T 2dr1_A          238 YFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI-GLD-ILAE--------  307 (386)
T ss_dssp             TTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCC-BSSC--------
T ss_pred             EEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCe-eCcC--------
Confidence                    1111  122233444444444444432      3445566667777777777754 221 0000        


Q ss_pred             HHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-
Q 021783          210 ELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-  288 (307)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-  288 (307)
                           .....+.++++.++......++.+.|..+||.++.|..+.                       .++++||+++. 
T Consensus       308 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~-----------------------~~~~iRi~~~~~  359 (386)
T 2dr1_A          308 -----PGHESPTITAVLTPPGIKGDEVYEAMRKRGFELAKGYGSV-----------------------KEKTFRIGHMGY  359 (386)
T ss_dssp             -----TTCBCSSEEEEECCTTCCHHHHHHHHHHTTEECEECCGGG-----------------------TTTEEEEECCSS
T ss_pred             -----ccccCCceEEEEcCCCCCHHHHHHHHHHCCeEEecCcccc-----------------------CCCEEEEECCCC
Confidence                 0001367888888633346778888887899888766310                       24679999984 


Q ss_pred             ---CChHHHHHHHHHHHhc
Q 021783          289 ---EDVNDLISDLDKALRT  304 (307)
Q Consensus       289 ---~~~~~~i~~l~~~l~~  304 (307)
                         ++++++++.|.+++++
T Consensus       360 ~~~~~i~~~~~~l~~~~~~  378 (386)
T 2dr1_A          360 MKFEDIQEMLDNLREVINE  378 (386)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence               6777777777777654

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.96  E-value=1.2e-28  Score=214.87  Aligned_cols=272  Identities=17%  Similarity=0.148  Sum_probs=178.7

Q ss_pred             HHHHHhc----CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccc
Q 021783            5 AAVTHLL----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         5 ~~~~~~~----~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~   75 (307)
                      .++.++.    ++||+|++++++|+++...+.. ++..|++++.++.+     |++++++.+++++++|++++++||||.
T Consensus        75 ~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~  153 (382)
T 4hvk_A           75 LAIIGYAMRNARKGKHILVSAVEHMSVINPAKF-LQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGT  153 (382)
T ss_dssp             HHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHH-HHHTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCB
T ss_pred             HHHHHhhhhhcCCCCEEEECCCCcHHHHHHHHH-HHhcCCEEEEeccCCCCCcCHHHHHHHhccCceEEEEECCCCCcee
Confidence            3445555    8999999999999988765543 35679999999975     899999999999999999999999999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH----HHH
Q 021783           76 ICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF----LQN  150 (307)
Q Consensus        76 ~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~----~~~  150 (307)
                      +.|+++|.++|++||+ +|+|++|+.+..+ +....++|++++|+||++ |+.|  .|+++++++........    ...
T Consensus       154 ~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~-g~~g--~g~~~~~~~~~~~~~~~~~~~~~~  229 (382)
T 4hvk_A          154 IQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIY-GPKG--VGALWIRKEAKLQPVILGGGQENG  229 (382)
T ss_dssp             BCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGT-SCTT--CEEEEEETTCCCCCSSCSSCTGGG
T ss_pred             eCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhc-CCCc--eEEEEEcCccCcCcccccCCCcCc
Confidence            9999999999999999 9999999987765 455568999999999987 6777  78888876531000000    000


Q ss_pred             hcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEE
Q 021783          151 AEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  226 (307)
Q Consensus       151 ~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  226 (307)
                      ....+.+.........+++.    ++...++..++.+.+.+.|+..+.+              ++..+.....+++++|.
T Consensus       230 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~--------------~~~~~~~~~~~~~~~~~  295 (382)
T 4hvk_A          230 LRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEES--------------YLNGHPEKRLPNNVNVR  295 (382)
T ss_dssp             TSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTE--------------EECSCSSSBCTTEEEEE
T ss_pred             cccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCe--------------EEeCCccccCCCEEEEE
Confidence            11122233333333333332    2333444455555666666544332              11111111224578888


Q ss_pred             eCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCC----CCeEEEEecc----CChHHHHHHH
Q 021783          227 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRISVGI----EDVNDLISDL  298 (307)
Q Consensus       227 ~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~iRis~~~----~~~~~~i~~l  298 (307)
                      +.+.+ ...+.+.|..+||.++.|..+....        ..+.......|..    ++++|++++.    ++++++++.|
T Consensus       296 ~~~~~-~~~~~~~l~~~gi~v~~g~~~~~~~--------~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l  366 (382)
T 4hvk_A          296 FSYIE-GESIVLSLDMAGIQASTGSACSSKT--------LQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVL  366 (382)
T ss_dssp             ETTCC-HHHHHHHHHHTTCBCBCC----------------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHH
T ss_pred             ECCCC-HHHHHHHHHHCCEEEeeCCccCCCC--------CcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHH
Confidence            86544 6778888888899999987643211        0112222334443    5889999984    5677777777


Q ss_pred             HHHHhc
Q 021783          299 DKALRT  304 (307)
Q Consensus       299 ~~~l~~  304 (307)
                      ++++++
T Consensus       367 ~~~~~~  372 (382)
T 4hvk_A          367 PGVIER  372 (382)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776653

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.96  E-value=2.6e-28  Score=213.06  Aligned_cols=259  Identities=16%  Similarity=0.117  Sum_probs=181.9

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCC-CceEEEEeCCCCCcccc
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP-WTKLVWVESPTNPRQQI   76 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~-~~~~v~~~~~~n~tG~~   76 (307)
                      |+.++.+++++||+|++++++|++.  .+...++..|++++.++.+     |++++++.+++ ++++|++++++||||.+
T Consensus        66 al~~~~~~~~~gd~vi~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~  143 (384)
T 3zrp_A           66 AMESVTSLLKPNDKILVVSNGVFGD--RWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVR  143 (384)
T ss_dssp             HHHHGGGGCCTTCEEEEECSSHHHH--HHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEE
T ss_pred             HHHHHHhhcCCCCEEEEecCCcchH--HHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceE
Confidence            3344445789999999999998663  2336678899999999975     89999999986 89999999999999999


Q ss_pred             ccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHH-----------
Q 021783           77 CDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-----------  144 (307)
Q Consensus        77 ~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~-----------  144 (307)
                      .|+++|.++|++||+++|+|++|+.+..+ +...++.|++++|+||+++|+.|  +|+++++++.+...           
T Consensus       144 ~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g--~g~~~~~~~~~~~~~~~~~~~~~~~  221 (384)
T 3zrp_A          144 EPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAG--LGLLLLSPKALSILDSQNSIAGYYL  221 (384)
T ss_dssp             CCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCSS--EEEEEECHHHHHHHHHCCCSCCSTT
T ss_pred             CcHHHHHHHHHhcCCEEEEECcccccCccccccccCCCEEEecCcccccCCCc--eEEEEECHHHHHHhcCCCCCCcccc
Confidence            99999999999999999999999987765 56667899999999999977777  89999986654333           


Q ss_pred             -HHHHHH---h----cC---CCCChhhHHHHhhcccc-----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCc
Q 021783          145 -LYFLQN---A----EG---SGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG  208 (307)
Q Consensus       145 -~~~~~~---~----~~---~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~  208 (307)
                       ......   .    ..   .+.+.........+++.     ++...++..++.+.+.+.|++. ++. +..+      .
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~------~  293 (384)
T 3zrp_A          222 DLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GLE-IVAR------R  293 (384)
T ss_dssp             CHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-BSCS------S
T ss_pred             cHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCe-EccC------c
Confidence             121111   1    00   12233233333233332     3344555566666777777654 211 0000      0


Q ss_pred             hHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc
Q 021783          209 HELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  288 (307)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~  288 (307)
                            .....+.+++|.+++ .....+.+.|..+||.++.|..+.                        .+++|++++.
T Consensus       294 ------~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~~~~------------------------~~~iRi~~~~  342 (384)
T 3zrp_A          294 ------PESYSNTVTGVILKV-ADPQKVLAGTVNEGVEFAPGVHPA------------------------FKYFRIGHMG  342 (384)
T ss_dssp             ------GGGBCSSEEEEECSS-SCHHHHHHHHHTTTCCCEECCCTT------------------------CCEEEEECCS
T ss_pred             ------ccccCccEEEEECCC-CCHHHHHHHHHHCCEEEecCCCCC------------------------cCEEEEeccc
Confidence                  011235677888876 347788888888899888766311                        1569999873


Q ss_pred             ----CChHHHHHHHHHHHhc
Q 021783          289 ----EDVNDLISDLDKALRT  304 (307)
Q Consensus       289 ----~~~~~~i~~l~~~l~~  304 (307)
                          ++++++++.|.+++++
T Consensus       343 ~~~~e~i~~~~~~l~~~l~~  362 (384)
T 3zrp_A          343 WVTPNDAIIAISVIERTLRK  362 (384)
T ss_dssp             SCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHH
Confidence                6778888888887764

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.96  E-value=1.1e-27  Score=209.75  Aligned_cols=260  Identities=16%  Similarity=0.183  Sum_probs=182.1

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++++||+|++++|+|+++.    ..++..|++++.++.+       |++++++.+++++++|++++|+||||
T Consensus        99 a~~~~~~~~~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG  174 (389)
T 1gd9_A           99 AFLMGLSAFLKDGEEVLIPTPAFVSYA----PAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTG  174 (389)
T ss_dssp             HHHHHHTTTCCTTCEEEEEESCCTTHH----HHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTC
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCchhHH----HHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECCCCCCC
Confidence            45 344456789999999999999887    5566789999998853       78999999988899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-----CccC----CCccEEEeccccccccCCCceeEEEEEcChhHH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  142 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~~~----~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~  142 (307)
                      .+++   +++|.++|++||+++|+|++|+.+...     ....    .+.|++++|+||++ +++|+|+|++++++ .+.
T Consensus       175 ~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~-~~~  252 (389)
T 1gd9_A          175 AVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTF-AMTGWRLGFVAAPS-WII  252 (389)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTT-TCGGGCCEEEECCH-HHH
T ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhc-CCcccceEEEEECH-HHH
Confidence            9984   999999999999999999999865431     1222    46799999999999 66788999999984 455


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHhhccccH------HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhc
Q 021783          143 KELYFLQNAEGSGLAPFDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  216 (307)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~  216 (307)
                      +.+...........+...+..+...++..      +...+...++.+.+.+.|++. ++        .-.        . 
T Consensus       253 ~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~--------~~~--------~-  314 (389)
T 1gd9_A          253 ERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GL--------PTV--------K-  314 (389)
T ss_dssp             HHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TC--------CCC--------C-
T ss_pred             HHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc-CC--------eec--------C-
Confidence            55555444434445555555555555532      233344455566666666653 11        000        0 


Q ss_pred             cCCCceEEEEeCC-HHHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChH
Q 021783          217 KGAGSVLSFLTGS-LALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVN  292 (307)
Q Consensus       217 ~~~~~~~~~~~~~-~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~  292 (307)
                      ...+.++++.++. ..+..++.+.|. .+||.++.|..|...                     .++++|+|++.  ++++
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~---------------------~~~~iRi~~~~~~~~i~  373 (389)
T 1gd9_A          315 PKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKA---------------------GEGYVRISYATAYEKLE  373 (389)
T ss_dssp             CCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGG---------------------GTTBEEEECCSCHHHHH
T ss_pred             CCeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCC---------------------CCCeEEEEecCCHHHHH
Confidence            1123345555542 123667888876 789998887653210                     25679999986  5777


Q ss_pred             HHHHHHHHHHhcCCC
Q 021783          293 DLISDLDKALRTGPL  307 (307)
Q Consensus       293 ~~i~~l~~~l~~~~~  307 (307)
                      +.++.|.+++++.++
T Consensus       374 ~~l~~l~~~~~~~~~  388 (389)
T 1gd9_A          374 EAMDRMERVLKERKL  388 (389)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhccC
Confidence            788888888876543

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.96  E-value=2.9e-27  Score=207.83  Aligned_cols=255  Identities=14%  Similarity=0.131  Sum_probs=185.0

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCC------CceEEEEeCCCCCcccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP------WTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~   78 (307)
                      .++.+++++||+|++++|.|+++.    ..++..|++++.++..|++++++.+++      ++++|++++++||||.+.+
T Consensus       120 ~~~~~~~~~gd~v~~~~~~~~~~~----~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~  195 (401)
T 1fc4_A          120 GLFETLLGAEDAIISDALNHASII----DGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN  195 (401)
T ss_dssp             TTHHHHCCTTCEEEEETTCCHHHH----HHHHTSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC
T ss_pred             HHHHHHcCCCCEEEEcchhHHHHH----HHHHHcCCceEEECCCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC
Confidence            455567899999999999998777    456788999999998899999998864      7999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCc-CC--------ccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVL-SR--------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~-~~--------~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                      +++|.++|++||+++|+|++|+.+.. ..        ....+.|++++|+||+++++.   +|+++++++ +.+.+....
T Consensus       196 ~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~---gG~~~~~~~-~~~~l~~~~  271 (401)
T 1fc4_A          196 LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGAS---GGYTAARKE-VVEWLRQRS  271 (401)
T ss_dssp             HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSS---CEEEEECHH-HHHHHHHHC
T ss_pred             HHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCC---CEEEEcCHH-HHHHHHHhC
Confidence            99999999999999999999975543 11        112257999999999995554   499998744 444444322


Q ss_pred             -Hh-cCCCCChhhHHHHhhccccH---HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEE
Q 021783          150 -NA-EGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  224 (307)
Q Consensus       150 -~~-~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  224 (307)
                       .. .....+...+..+..+++.+   ....+...++.+.+.+.|++. ++        .-.          ...+++++
T Consensus       272 ~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~--------~~~----------~~~~~~~~  332 (401)
T 1fc4_A          272 RPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA-GF--------TLA----------GADHAIIP  332 (401)
T ss_dssp             HHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TC--------CBC----------CSSSSEEE
T ss_pred             cCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CC--------ccc----------CCCCCEEE
Confidence             12 23455556666665555543   345566667777777777754 11        000          12467888


Q ss_pred             EEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHH
Q 021783          225 FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDK  300 (307)
Q Consensus       225 ~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~  300 (307)
                      +.+++......+.+.|..+||.++.|..+..                    ...++++|++++.    ++++++++.|.+
T Consensus       333 ~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~--------------------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  392 (401)
T 1fc4_A          333 VMLGDAVVAQKFARELQKEGIYVTGFFYPVV--------------------PKGQARIRTQMSAAHTPEQITRAVEAFTR  392 (401)
T ss_dssp             EEEECHHHHHHHHHHHHHTTEECCEECTTSS--------------------CTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             EEcCChHHHHHHHHHHHHCCcEEeeecCCCC--------------------CCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            8887654577888888888998887654210                    0124679999983    677888888888


Q ss_pred             HHhcCC
Q 021783          301 ALRTGP  306 (307)
Q Consensus       301 ~l~~~~  306 (307)
                      ++++++
T Consensus       393 ~~~~~~  398 (401)
T 1fc4_A          393 IGKQLG  398 (401)
T ss_dssp             HHHHTT
T ss_pred             HHHHhC
Confidence            877654

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.96  E-value=4.9e-27  Score=206.15  Aligned_cols=255  Identities=15%  Similarity=0.121  Sum_probs=182.2

Q ss_pred             HH-HHHHHhcCCC-CeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~g-d~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++++| |+|++++|+|+++.    ..++..|++++.+|.+      |++++++.+++++++|++++|+||||
T Consensus       111 al~~~~~~l~~~g~d~vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG  186 (398)
T 3ele_A          111 SLSICFRALTSDAYDEFITIAPYFPEYK----VFVNAAGARLVEVPADTEHFQIDFDALEERINAHTRGVIINSPNNPSG  186 (398)
T ss_dssp             HHHHHHHHHCCSTTCEEEEESSCCTHHH----HHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSSCTTTC
T ss_pred             HHHHHHHHHcCCCCCEEEEeCCCchhhH----HHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCCCCCCC
Confidence            44 4555678999 99999999998887    5567789999999875      88999999998999999999999999


Q ss_pred             cccc---HHHHHHHHHH------cCCEEEEeCccCCCC-----cC-CccCCCccEEEeccccccccCCCceeEEEEEcCh
Q 021783           75 QICD---IRKIAEMAHA------HGALLLVDNSIMSPV-----LS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~------~~~~li~D~a~~~~~-----~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      .+++   +++|+++|++      ||+++|+|++|+...     .+ .....+.+++++|+||++ |.+|+|+|+++++++
T Consensus       187 ~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~  265 (398)
T 3ele_A          187 TVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSL-SLPGERIGYVLVPDE  265 (398)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTS-SCTTTCCEEEECCTT
T ss_pred             CCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcC-CCccceeEEEEEcch
Confidence            9997   7778899999      999999999998532     12 223456889999999999 667899999999876


Q ss_pred             hH-----HHHHHHHHHhc-CCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHh
Q 021783          140 RL-----AKELYFLQNAE-GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  213 (307)
Q Consensus       140 ~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~  213 (307)
                      ..     ...+....... ....+...+..+...++... ..+.+.++.+.+.+.|++. ++ .+..             
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~l~~~L~~~-g~-~~~~-------------  329 (398)
T 3ele_A          266 VYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG-DINAYKENRDLLYEGLTRI-GY-HCFK-------------  329 (398)
T ss_dssp             STTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC-CHHHHHHHHHHHHHHHHHH-TC-CEEC-------------
T ss_pred             hhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHc-CC-eecC-------------
Confidence            32     22232233222 23344455555555554321 2345566667777777653 11 1111             


Q ss_pred             hhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CCh
Q 021783          214 SQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDV  291 (307)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~  291 (307)
                         ...+.++++.+++.+ ...+.+.+..+||.+++|..|.                       .++++|||++.  +++
T Consensus       330 ---~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~v~~g~~~~-----------------------~~~~iRis~~~~~e~i  382 (398)
T 3ele_A          330 ---PDGAFYMFVKALEDD-SNAFCEKAKEEDVLIVAADGFG-----------------------CPGWVRISYCVDREMI  382 (398)
T ss_dssp             ---CSBSSEEEEECSSSC-HHHHHHHHHTTTEECEESGGGT-----------------------CTTEEEEECCSCHHHH
T ss_pred             ---CCeeEEEEEEcCCCC-HHHHHHHHHHCCEEEeCccccC-----------------------CCCeEEEEecCCHHHH
Confidence               112444777776443 6778888888899998887632                       14579999975  677


Q ss_pred             HHHHHHHHHHHhcC
Q 021783          292 NDLISDLDKALRTG  305 (307)
Q Consensus       292 ~~~i~~l~~~l~~~  305 (307)
                      ++.++.|.++++++
T Consensus       383 ~~~l~~l~~~l~~~  396 (398)
T 3ele_A          383 KHSMPAFEKIYKKY  396 (398)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            88888888887653

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.96  E-value=7.5e-28  Score=208.08  Aligned_cols=250  Identities=13%  Similarity=0.173  Sum_probs=183.3

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcC--CCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG--PWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~--~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++++||+|+++.|+|+++.    ..++..|++++.++.+     |++++++.++  +++++|++++|+||||
T Consensus        80 a~~~~~~~l~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG  155 (354)
T 3ly1_A           80 GIRAAIEAYASLEAQLVIPELTYGDGE----HFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTG  155 (354)
T ss_dssp             HHHHHHHHHCCTTCEEEEESSSCTHHH----HHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTC
T ss_pred             HHHHHHHHHhCCCCeEEECCCCchHHH----HHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcC
Confidence            45 445567899999999999999887    5667889999999987     8999999998  7999999999999999


Q ss_pred             ccccHHHHHHHHHH--cCCEEEEeCccCCCCcC----C----ccCC-CccEEEeccccccccCCCceeEEEEEcChhHHH
Q 021783           75 QICDIRKIAEMAHA--HGALLLVDNSIMSPVLS----R----PLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        75 ~~~~~~~l~~~~~~--~~~~li~D~a~~~~~~~----~----~~~~-~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~  143 (307)
                      .+++.+++.++++.  +|+++|+|++|+.....    .    .... +.+++++|+||++ |.+|+++|++++++ .+.+
T Consensus       156 ~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~-~~~~  233 (354)
T 3ly1_A          156 TITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIH-AMAGMRVGYAVAHP-TVIA  233 (354)
T ss_dssp             CCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTT-CCGGGCCEEEECCH-HHHH
T ss_pred             CCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhc-cChhhhheeeecCH-HHHH
Confidence            99998888888887  99999999999743321    1    1223 6789999999999 66788999999864 4444


Q ss_pred             HHHHHHHhcCCCCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCC
Q 021783          144 ELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG  220 (307)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  220 (307)
                      .+......  ...+...+..+...++.   +....+...++.+.+.+.+++. ++        ...          +..+
T Consensus       234 ~~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~--------~~~----------~~~~  292 (354)
T 3ly1_A          234 LMGRYVAG--EKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL-KL--------PYL----------PSEG  292 (354)
T ss_dssp             HHGGGTTC--SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TC--------CBC----------CCCS
T ss_pred             HHHHhcCC--CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CC--------eEC----------CCCc
Confidence            44333222  34455555555555553   3444555666667777777653 11        111          1136


Q ss_pred             ceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHH
Q 021783          221 SVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLD  299 (307)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~  299 (307)
                      .++++.++.  ....+.+.|..+||.++ |..+.                       .++++|||++. ++++++++.|.
T Consensus       293 ~~~~~~~~~--~~~~~~~~l~~~gi~v~-g~~~~-----------------------~~~~iRis~~~~~~i~~~~~~l~  346 (354)
T 3ly1_A          293 NFVFHQLVV--PLKDYQTHMADAGVLIG-RAFPP-----------------------ADNWCRISLGTPQEMQWVADTMR  346 (354)
T ss_dssp             SEEEEECSS--CHHHHHHHHHHTTEECC-CCCTT-----------------------CTTEEEEECCCHHHHHHHHHHHH
T ss_pred             eEEEEECCC--CHHHHHHHHHHCCEEEe-ecCCC-----------------------CCCEEEEEcCCHHHHHHHHHHHH
Confidence            677888865  36677788888899988 65411                       35779999986 68888888888


Q ss_pred             HHHhcC
Q 021783          300 KALRTG  305 (307)
Q Consensus       300 ~~l~~~  305 (307)
                      +++++.
T Consensus       347 ~~l~~~  352 (354)
T 3ly1_A          347 EFRKKS  352 (354)
T ss_dssp             HHHHTT
T ss_pred             HHHHhh
Confidence            888753

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.96  E-value=1.7e-27  Score=208.44  Aligned_cols=259  Identities=17%  Similarity=0.139  Sum_probs=183.7

Q ss_pred             HH-HHHHHh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCc
Q 021783            3 AL-AAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPR   73 (307)
Q Consensus         3 al-~~~~~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~t   73 (307)
                      |+ .++.++ +++||+|++++|+|+++...+...++..|++++.++.+       |++++++.+++++++|++++++|||
T Consensus        88 a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~npt  167 (390)
T 1elu_A           88 GCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNT  167 (390)
T ss_dssp             HHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTT
T ss_pred             HHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccCC
Confidence            44 445556 78999999999999988766655667789999999873       6899999999899999999999999


Q ss_pred             cccccHHHHHHHHH----HcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH
Q 021783           74 QQICDIRKIAEMAH----AHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  148 (307)
Q Consensus        74 G~~~~~~~l~~~~~----~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~  148 (307)
                      |.+.|+++|.++|+    ++|+++|+|++|+.+..+ +....+.|++++|+||++.++.|  +|+++++++.... +...
T Consensus       168 G~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g--~G~~~~~~~~~~~-~~~~  244 (390)
T 1elu_A          168 GQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAG--VGGLYIHGDCLGE-INPT  244 (390)
T ss_dssp             CCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTT--CEEEEECTTTGGG-CCCC
T ss_pred             ceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEccccccccCCCc--eEEEEECHHhHhh-cCCc
Confidence            99999999999999    999999999999977654 44456799999999997767766  8999998654322 2110


Q ss_pred             ----------------------HHhcCCCCChhhHHHHhhcccc------HHHHHHHHHHHHHHHHHHHhcCCCccEEec
Q 021783          149 ----------------------QNAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNY  200 (307)
Q Consensus       149 ----------------------~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  200 (307)
                                            ......+.+.........+++.      +....++..++.+.+.+.|++.+++ .+..
T Consensus       245 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~  323 (390)
T 1elu_A          245 YVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHV-HCLA  323 (390)
T ss_dssp             SCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTE-EESC
T ss_pred             cccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCc-EEec
Confidence                                  0111122232322322223321      4445666677777788888765432 1111


Q ss_pred             CCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCC
Q 021783          201 AGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTED  280 (307)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  280 (307)
                      +.              ++.++++.|.++......++.+.|..+||.++.|.                          .++
T Consensus       324 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~--------------------------~~~  363 (390)
T 1elu_A          324 TS--------------APQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIA--------------------------DPD  363 (390)
T ss_dssp             SS--------------CCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEET--------------------------TTT
T ss_pred             Cc--------------cccccEEEEEcCCCCCHHHHHHHHHHCCEEEEecC--------------------------CCC
Confidence            10              12467888888532236678888877899877643                          145


Q ss_pred             eEEEEeccCChHHHHHHHHHHHhcC
Q 021783          281 LVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       281 ~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      ++|||++....++.++.+.+.|+++
T Consensus       364 ~iRis~~~~~~~~~i~~~~~~l~~~  388 (390)
T 1elu_A          364 CIRACCHYITDEEEINHLLARLADF  388 (390)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred             eEEEecccCCCHHHHHHHHHHHHhh
Confidence            6999998767777777777777654

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.96  E-value=3.7e-27  Score=206.98  Aligned_cols=258  Identities=15%  Similarity=0.154  Sum_probs=181.2

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC--------CChHHHHhhcC-CCceEEEEeCCCCC
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIG-PWTKLVWVESPTNP   72 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~--------~d~~~l~~~l~-~~~~~v~~~~~~n~   72 (307)
                      |+ .++.+++++||+|+++.|+|+++.    ..++..|++++.+|.        .|+++++++++ +++++|++++|+||
T Consensus       101 a~~~~~~~l~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~np  176 (399)
T 1c7n_A          101 AVFNAVREFTKPGDGVIIITPVYYPFF----MAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNP  176 (399)
T ss_dssp             HHHHHHHHHCCTTCEEEECSSCCTHHH----HHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTT
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCcHhHH----HHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCC
Confidence            45 455567899999999999999887    556678999999886        37899999998 78999999999999


Q ss_pred             cccccc---HHHHHHHHHHcCCEEEEeCccCCCCc-----CCccC-----CCccEEEeccccccccCCCceeEEEEEcCh
Q 021783           73 RQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLE-----LGADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        73 tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~-----~~~~~-----~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      ||.+++   +++|.++|++||+++|+|++|+....     .....     .+.+++++|+||++ +++|+|+|+++++++
T Consensus       177 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~  255 (399)
T 1c7n_A          177 VGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTF-NIAGMGMSNIIIKNP  255 (399)
T ss_dssp             TTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHH-TCGGGCCEEEECCCH
T ss_pred             CCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhc-cccchheEEEEECCH
Confidence            999998   99999999999999999999985322     12221     35679999999999 667889999999866


Q ss_pred             hHHHHHHHHHHhcC-CCCChhhHHHHhhccc----cHHHHHHHHHHHHHHHHHHHhc-CCCccEEecCCCCCCCchHHHh
Q 021783          140 RLAKELYFLQNAEG-SGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHY  213 (307)
Q Consensus       140 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~l~~~~~~~~~~  213 (307)
                      .+.+.+.......+ .+.+...+..+...++    .++...+...++.+.+.+.|++ .+++.        -.       
T Consensus       256 ~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--------~~-------  320 (399)
T 1c7n_A          256 DIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIK--------AP-------  320 (399)
T ss_dssp             HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSB--------CC-------
T ss_pred             HHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCe--------Ee-------
Confidence            56555555444332 2345555554444442    2333444555666677777765 33221        01       


Q ss_pred             hhccCCCc-eEEEEeCCH-HHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--
Q 021783          214 SQAKGAGS-VLSFLTGSL-ALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--  288 (307)
Q Consensus       214 ~~~~~~~~-~~~~~~~~~-~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--  288 (307)
                         +..++ ++++.++.. .....+.+.|. .+||.+++|..|..                     ..++++|||++.  
T Consensus       321 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---------------------~~~~~iRis~~~~~  376 (399)
T 1c7n_A          321 ---LIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGD---------------------GGIGFERINLAAPS  376 (399)
T ss_dssp             ---CCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCG---------------------GGTTEEEEECCSCH
T ss_pred             ---cCCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCC---------------------CCCCeEEEEeccCH
Confidence               11233 445677532 23667888885 68999888765321                     025679999986  


Q ss_pred             CChHHHHHHHHHHHhc
Q 021783          289 EDVNDLISDLDKALRT  304 (307)
Q Consensus       289 ~~~~~~i~~l~~~l~~  304 (307)
                      +++++.++.|.+++++
T Consensus       377 ~~l~~~l~~l~~~l~~  392 (399)
T 1c7n_A          377 SVIQESLERLNKALKD  392 (399)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5677777777777654

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.95  E-value=3.2e-28  Score=214.86  Aligned_cols=261  Identities=14%  Similarity=0.099  Sum_probs=182.6

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcC-CCceEEEEeCCCCCccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG-PWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~-~~~~~v~~~~~~n~tG~   75 (307)
                      |+ .++.++++|||+|++++++|++..  +...++..|++++.++.+     |+++++++++ +++++|++++++||||.
T Consensus        74 al~~~~~~l~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~  151 (416)
T 3isl_A           74 GIEAVLASVIEPEDDVLIPIYGRFGYL--LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGR  151 (416)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTE
T ss_pred             HHHHHHHHhcCCCCEEEEecCCcccHH--HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCce
Confidence            44 455667899999999999997632  235677889999999985     8999999998 68999999999999999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH-----
Q 021783           76 ICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-----  149 (307)
Q Consensus        76 ~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~-----  149 (307)
                      +.|+++|.++|++||+++|+|++|+.+..+ +...+++|++++|+||+++++.|  +|+++++++.. +.+....     
T Consensus       152 ~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g--~g~~~~~~~~~-~~~~~~~~~~~G  228 (416)
T 3isl_A          152 IHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSG--MAPITYNERVA-DVIAARKKVERG  228 (416)
T ss_dssp             ECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCCCSS--EEEEEECHHHH-HHHHTC------
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecCccccCCCCC--eEEEEECHHHH-HHhhcccccccc
Confidence            999999999999999999999999987765 56667899999999999778877  89999986543 3332110     


Q ss_pred             ---------------------------H---h---cCCCCChhhHHHHhhcccc-----HHHHHHHHHHHHHHHHHHHhc
Q 021783          150 ---------------------------N---A---EGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLAS  191 (307)
Q Consensus       150 ---------------------------~---~---~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~  191 (307)
                                                 .   .   ...+.+.........+++.     ++...++..++.+.+.+.|++
T Consensus       229 w~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~  308 (416)
T 3isl_A          229 IATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKA  308 (416)
T ss_dssp             ------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence                                       0   0   0112222222333233322     334455556666666766665


Q ss_pred             CCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcc-eeecCCCCccceeecccccCCCCCcHH
Q 021783          192 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVE  270 (307)
Q Consensus       192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~p~~~~~~~~~~~  270 (307)
                      . ++        .      +..+.....+.++++.++......++.+.|..+ ||.++.|..                  
T Consensus       309 ~-g~--------~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~------------------  355 (416)
T 3isl_A          309 M-GL--------R------LFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFG------------------  355 (416)
T ss_dssp             T-TC--------C------BCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCS------------------
T ss_pred             c-CC--------E------eccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCC------------------
Confidence            3 11        1      000011113568888885333477888888766 999887652                  


Q ss_pred             HHHhcCCCCCeEEEEecc----CC-hHHHHHHHHHHHhcCC
Q 021783          271 VRQARGLTEDLVRISVGI----ED-VNDLISDLDKALRTGP  306 (307)
Q Consensus       271 ~~~~~~~~~~~iRis~~~----~~-~~~~i~~l~~~l~~~~  306 (307)
                           ...++++|++++.    ++ ++++++.|+++++++.
T Consensus       356 -----~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~  391 (416)
T 3isl_A          356 -----PLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHN  391 (416)
T ss_dssp             -----TTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred             -----CCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcC
Confidence                 1135789999932    45 8888999988887653

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.95  E-value=2.2e-27  Score=207.74  Aligned_cols=256  Identities=13%  Similarity=0.145  Sum_probs=179.9

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC---------ChHHHHhhcCCCceEEEEeCCCCC
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---------DLDEVASAIGPWTKLVWVESPTNP   72 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---------d~~~l~~~l~~~~~~v~~~~~~n~   72 (307)
                      |+ .++.+++++||+|+++.|+|.++.    ..++..|++++.++.+         |++++++++++ ++++++++|+||
T Consensus       102 a~~~~~~~~~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~np  176 (391)
T 4dq6_A          102 AISLLINELTKANDKIMIQEPVYSPFN----SVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNP  176 (391)
T ss_dssp             HHHHHHHHHSCTTCEEEECSSCCTHHH----HHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTT
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCCHHHH----HHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCC
Confidence            44 455567899999999999999887    5567789999999875         88999999988 999999999999


Q ss_pred             ccccc---cHHHHHHHHHHcCCEEEEeCccCCCCcC-----CccCC-----CccEEEeccccccccCCCceeEEEEEcCh
Q 021783           73 RQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLEL-----GADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        73 tG~~~---~~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~~~~-----~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      ||.++   ++++|.++|++||+++|+|++|+.....     .....     +.+++++|+||++ |.+|+++|+++++++
T Consensus       177 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~  255 (391)
T 4dq6_A          177 VGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTF-NIAGLQSSYVVLPDE  255 (391)
T ss_dssp             TTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHH-TCGGGCCEEEECCSH
T ss_pred             CCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhc-cCcccceEEEEeCCH
Confidence            99995   5889999999999999999999753321     22222     4559999999999 667889999999875


Q ss_pred             hHHHHHHHHHHhc-CCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhc-CCCccEEecCCCCCCCchHHHh
Q 021783          140 RLAKELYFLQNAE-GSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHY  213 (307)
Q Consensus       140 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~l~~~~~~~~~~  213 (307)
                      .+.+.+....... ..+.+...+..+...++.    +....+...++.+.+.+.+++ .+.+. +..             
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~-------------  321 (391)
T 4dq6_A          256 KDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKLK-VRK-------------  321 (391)
T ss_dssp             HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSE-ECC-------------
T ss_pred             HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCE-ecC-------------
Confidence            6666665554333 334555555444444432    344455566667777777765 33321 110             


Q ss_pred             hhccCCCceEEEEeCC-HHHHHHHHhcCCcc-eeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--C
Q 021783          214 SQAKGAGSVLSFLTGS-LALSKHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--E  289 (307)
Q Consensus       214 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~  289 (307)
                         ...+.++++.++. ......+.+.|..+ ||.+++|..|..                     ..++++|+|++.  +
T Consensus       322 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---------------------~~~~~iRis~~~~~~  377 (391)
T 4dq6_A          322 ---PEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGI---------------------GGSGYQRINLACPRS  377 (391)
T ss_dssp             ---CSBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCT---------------------TCTTEEEEECCSCHH
T ss_pred             ---CCccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCC---------------------CCCCeEEEEEcCCHH
Confidence               1123344566653 12367788888777 999988775321                     135789999985  5


Q ss_pred             ChHHHHHHHHHHH
Q 021783          290 DVNDLISDLDKAL  302 (307)
Q Consensus       290 ~~~~~i~~l~~~l  302 (307)
                      ++++.++.|.+++
T Consensus       378 ~i~~~l~~l~~~l  390 (391)
T 4dq6_A          378 MLEEALIRIKNAI  390 (391)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            5666666666655

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.95  E-value=4.4e-28  Score=210.56  Aligned_cols=250  Identities=16%  Similarity=0.209  Sum_probs=181.6

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCC-CceEEEEeCCCCCccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP-WTKLVWVESPTNPRQQ   75 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~-~~~~v~~~~~~n~tG~   75 (307)
                      |+ .++.+++++||+|+++.|+|.++.    ..++..|++++.++.+     |++++++++++ ++++|++++|+||||.
T Consensus        97 a~~~~~~~~~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~  172 (367)
T 3euc_A           97 IISMLALAAARPGAKVMAPVPGFVMYA----MSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGN  172 (367)
T ss_dssp             HHHHHHHHTCCTTCEEEEEESCSCCSC----HHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTCC
T ss_pred             HHHHHHHHHcCCCCEEEEcCCCHHHHH----HHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCCC
Confidence            45 445567899999999999999888    5567889999999864     89999999987 8999999999999999


Q ss_pred             ccc---HHHHHHHHHHc--CCEEEEeCccCCCC----cCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH
Q 021783           76 ICD---IRKIAEMAHAH--GALLLVDNSIMSPV----LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  146 (307)
Q Consensus        76 ~~~---~~~l~~~~~~~--~~~li~D~a~~~~~----~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~  146 (307)
                      +++   +++|+++|++|  |+++|+|++|+...    .+.....+.+++++|+||+  +.+|+++|+++++++ +.+.+.
T Consensus       173 ~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~--~~~G~r~G~~~~~~~-~~~~~~  249 (367)
T 3euc_A          173 LFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL--GLAGIRLGYVAGDPQ-WLEQLD  249 (367)
T ss_dssp             CCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT--TSCSCCEEEEEECHH-HHHHHG
T ss_pred             CCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh--cccccCceeeeeCHH-HHHHHH
Confidence            974   78888889999  99999999997432    2233445678999999999  467889999999744 433333


Q ss_pred             HHHHhcCCCCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceE
Q 021783          147 FLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  223 (307)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  223 (307)
                      ....  ....+...+..+...++.   +....+...++.+.+.+.+++.+++. + .                ...+.++
T Consensus       250 ~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~-~----------------~~~~~~~  309 (367)
T 3euc_A          250 KVRP--PYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHGGVT-V-F----------------PSAANFL  309 (367)
T ss_dssp             GGCC--SSCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSTTCE-E-C----------------CCSSSEE
T ss_pred             HhCC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcE-E-C----------------CCCCeEE
Confidence            2221  223455555555555544   34455566667777777777654331 1 1                1135677


Q ss_pred             EEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHH
Q 021783          224 SFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKAL  302 (307)
Q Consensus       224 ~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l  302 (307)
                      ++.++   ....+.+.|..+||.++.|..+.                     +..++++|+|++. ++++++++.|++++
T Consensus       310 ~~~~~---~~~~l~~~l~~~gi~v~~~~~~~---------------------~~~~~~iRis~~~~~~i~~~~~~l~~~l  365 (367)
T 3euc_A          310 LARVP---DAAQTFDRLLARKVLIKNVSKMH---------------------PLLANCLRVTVSTPEENAQFLEAFAASL  365 (367)
T ss_dssp             EEECS---CHHHHHHHHHTTTEECEECGGGC---------------------GGGTTEEEEECCCHHHHHHHHHHHHHHT
T ss_pred             EEECC---CHHHHHHHHHHCCeEEEECCccC---------------------CCCCCEEEEecCCHHHHHHHHHHHHHHh
Confidence            78776   36677888888999998876532                     1135789999985 67777888777766


Q ss_pred             h
Q 021783          303 R  303 (307)
Q Consensus       303 ~  303 (307)
                      +
T Consensus       366 ~  366 (367)
T 3euc_A          366 Q  366 (367)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.95  E-value=2.3e-27  Score=207.60  Aligned_cols=256  Identities=15%  Similarity=0.172  Sum_probs=178.9

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++++||+|++++|+|+++.    ..++..|++++.++.+       |++++++.+++++++|++++|+||||
T Consensus       102 a~~~~~~~~~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG  177 (388)
T 1j32_A          102 SIFNLMLAMIEPGDEVIIPAPFWVSYP----EMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTG  177 (388)
T ss_dssp             HHHHHHHHHCCTTCEEEEESSCCTHHH----HHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTC
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCChhHH----HHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCCCCCCC
Confidence            44 455557899999999999998877    5566789999999863       78999999998899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-----CccC-----CCccEEEeccccccccCCCceeEEEEEcChhH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLE-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~~~-----~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~  141 (307)
                      .+++   +++|.++|++||+++|+|++|+.....     ....     .+.|++++|+||++ +++|+|+|+++++++ +
T Consensus       178 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~-~~~G~r~G~~~~~~~-~  255 (388)
T 1j32_A          178 MVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY-AMTGWRVGFLAGPVP-L  255 (388)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTT-TCTTTCCEEEECCHH-H
T ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhcc-CCcccceEEEEeCHH-H
Confidence            9975   999999999999999999999854321     1111     45899999999999 677999999998754 5


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHhhccc----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhcc
Q 021783          142 AKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  217 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~  217 (307)
                      .+.+...........+...+..+...++    .+....+...++.+.+.+.|++.+++..        .        . .
T Consensus       256 ~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~--------~--------~-~  318 (388)
T 1j32_A          256 VKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLEC--------P--------K-P  318 (388)
T ss_dssp             HHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBC--------C--------C-C
T ss_pred             HHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcc--------c--------C-C
Confidence            5555555444444445555544444432    2444555666777777777776532210        0        0 0


Q ss_pred             CCCceEEEEeCC-HHHHHHHHhcCCc-ceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHH
Q 021783          218 GAGSVLSFLTGS-LALSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVND  293 (307)
Q Consensus       218 ~~~~~~~~~~~~-~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~  293 (307)
                      ..+.++++.++. ......+.+.|.. +||.++.|..|.                       .++++|+|++.  +++++
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-----------------------~~~~iRis~~~~~~~i~~  375 (388)
T 1j32_A          319 DGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFG-----------------------ADDCIRLSYATDLDTIKR  375 (388)
T ss_dssp             CBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGT-----------------------CTTBEEEECCSCHHHHHH
T ss_pred             CeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhC-----------------------CCCcEEEEecCCHHHHHH
Confidence            112333444431 1135677777765 699888776522                       14569999975  56777


Q ss_pred             HHHHHHHHHhc
Q 021783          294 LISDLDKALRT  304 (307)
Q Consensus       294 ~i~~l~~~l~~  304 (307)
                      .++.|.+++++
T Consensus       376 ~~~~l~~~l~~  386 (388)
T 1j32_A          376 GMERLEKFLHG  386 (388)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777777654

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.95  E-value=5.1e-27  Score=206.06  Aligned_cols=254  Identities=14%  Similarity=0.199  Sum_probs=181.0

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCC----CceEEEEeCCCCCccccccHH
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP----WTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~----~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      .++.+++++||+|++++|+|+++.    ..++..|++++.++..|++++++.+++    ++++|++++++||||.+.+++
T Consensus       118 ~~~~~~~~~gd~V~~~~p~~~~~~----~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~  193 (398)
T 3a2b_A          118 GPLSCLMGRNDYILLDERDHASII----DGSRLSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLP  193 (398)
T ss_dssp             HHHHHSSCTTCEEEEETTCCHHHH----HHHHHSSSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHH
T ss_pred             HHHHHHhCCCCEEEECCccCHHHH----HHHHHcCCceEEeCCCCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHH
Confidence            455667899999999999999887    556678999999999999999999875    799999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCcC----CccC-C----CccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH-HH
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVLS----RPLE-L----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-QN  150 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~~----~~~~-~----~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~-~~  150 (307)
                      +|.++|++||+++|+|++|+.+.+.    .... +    ++|++++|+||++ +++|   |+++++++ +.+.+... ..
T Consensus       194 ~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~-~~~G---G~~~~~~~-~~~~l~~~~~~  268 (398)
T 3a2b_A          194 ELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSL-ASLG---GFVAGDAD-VIDFLKHNARS  268 (398)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTT-CSSC---EEEEECHH-HHHHHHHHCHH
T ss_pred             HHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccc-cCCC---cEEEeCHH-HHHHHHHhccc
Confidence            9999999999999999999866431    1111 1    2599999999999 5665   99998754 44444432 22


Q ss_pred             hc-CCCCChhhHHHHhhccccH---HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEE
Q 021783          151 AE-GSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  226 (307)
Q Consensus       151 ~~-~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  226 (307)
                      .. .....+.....+...++.+   ....+...++.+.+.+.|++. ++        .-.          ...+.++++.
T Consensus       269 ~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~--------~~~----------~~~g~~~~~~  329 (398)
T 3a2b_A          269 VMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDH-GF--------DLG----------ATESPILPIF  329 (398)
T ss_dssp             HHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHT-TC--------CBC----------SCCSSEEEEE
T ss_pred             ceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhc-CC--------CcC----------CCCCCEEEEE
Confidence            22 2233333333333444332   234455566666777777654 11        100          1135788888


Q ss_pred             eCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHH
Q 021783          227 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKAL  302 (307)
Q Consensus       227 ~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l  302 (307)
                      +++......+.+.|..+||.++.|..+..   |                 ..++++|++++.    +++++.++.|.+++
T Consensus       330 ~~~~~~~~~l~~~l~~~gi~v~~~~~~~~---~-----------------~~~~~iRis~~~~~~~e~i~~~~~~l~~~l  389 (398)
T 3a2b_A          330 IRSNEKTFWVTKMLQDDGVFVNPVVSPAV---P-----------------AEESLIRFSLMATHTYDQIDEAIEKMVKVF  389 (398)
T ss_dssp             CCCHHHHHHHHHHHHHTTEECEEECTTTS---C-----------------GGGCEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHCCcEEEeeCCCCC---C-----------------CCCceEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            87654577888888888999887765321   0                 125679999984    67888888888888


Q ss_pred             hcCC
Q 021783          303 RTGP  306 (307)
Q Consensus       303 ~~~~  306 (307)
                      ++++
T Consensus       390 ~~~~  393 (398)
T 3a2b_A          390 KQAE  393 (398)
T ss_dssp             HHCC
T ss_pred             HHhC
Confidence            7654

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.95  E-value=1.9e-28  Score=215.20  Aligned_cols=272  Identities=19%  Similarity=0.133  Sum_probs=171.0

Q ss_pred             HH-HHHHHhc----CCCC-eEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCC
Q 021783            3 AL-AAVTHLL----GTGE-EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTN   71 (307)
Q Consensus         3 al-~~~~~~~----~~gd-~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n   71 (307)
                      |+ .++.+++    ++|| +|++++++|+++...+... +..|++++.++.+     |++++++++++++++|++++++|
T Consensus        92 al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~n  170 (400)
T 3vax_A           92 SNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHL-AGRGFEVDFLTPGPSGRISVEGVMERLRPDTLLVSLMHVNN  170 (400)
T ss_dssp             HHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHH-HTTTCEEEEECCCTTCCCCHHHHHTTCCTTEEEEECCSBCT
T ss_pred             HHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHH-HhcCCeEEEEccCCCCCcCHHHHHHhcCCCceEEEEECCCC
Confidence            44 3444555    8999 9999999999887666544 5689999999975     89999999999999999999999


Q ss_pred             CccccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEE-EcChhH-------H
Q 021783           72 PRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLA-VKGERL-------A  142 (307)
Q Consensus        72 ~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~-~~~~~~-------~  142 (307)
                      |||.+.|+++|.++|++||+++|+|++|+.+..+ +.... .|++++|+||++ |+.|  .|+++ ++++.+       .
T Consensus       171 ptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K~~-g~~g--~g~~~~~~~~~~~~~~~~~~  246 (400)
T 3vax_A          171 ETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHKIG-APKG--VGALVTRRREEMDDERVPLE  246 (400)
T ss_dssp             TTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGGGT-SCSS--CEEEEECBCSSSTTCBCCCC
T ss_pred             CceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHHhC-CCCc--eEEEEEecchhccccccccC
Confidence            9999999999999999999999999999987755 44445 899999999966 6777  78888 776211       1


Q ss_pred             HHHHH---HHHhcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhh
Q 021783          143 KELYF---LQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ  215 (307)
Q Consensus       143 ~~~~~---~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  215 (307)
                      .....   .........+.........+++.    ++...++..++.+.+.+.|+ .+++              ++..+.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~--------------~~~~~~  311 (400)
T 3vax_A          247 PIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA-STSF--------------QVNGDQ  311 (400)
T ss_dssp             CSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT-TTTC--------------EECSCT
T ss_pred             ceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC-CCCE--------------EEeCCc
Confidence            10000   00111222333333333333332    23334444555555666555 3322              111111


Q ss_pred             ccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCC----CCeEEEEe-cc--
Q 021783          216 AKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRISV-GI--  288 (307)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~iRis~-~~--  288 (307)
                      ....+++++|.+.+.+ ...+.+.|. +||.++.|..+.....+        +.......|..    ++++|||+ +.  
T Consensus       312 ~~~~~~~~~~~~~~~~-~~~l~~~L~-~gi~v~~g~~~~~~~~~--------~~~~~~~~g~~~~~~~~~iRls~~~~~~  381 (400)
T 3vax_A          312 DHVVPHILNLSFEDVD-AEAFLVTLK-DLVAVATGSASTSASFT--------PSHVLRAMGLPEEAASKSLRFSWTPGQA  381 (400)
T ss_dssp             TSBCTTEEEEECTTCC-HHHHHHHHH-HHHHHTTTTEEEEEEEC--------CHHHHHTTTCCHHHHTSEEEEEEEEC--
T ss_pred             ccCCCCEEEEEeCCCC-HHHHHHHHh-cCcEEEecccccCCCCC--------ccHHHHHcCCCccccCceEEEEccCCCC
Confidence            1113467888876543 778888888 99999999865432111        22233344544    48999999 63  


Q ss_pred             --CChHHHHHHHHHHHhc
Q 021783          289 --EDVNDLISDLDKALRT  304 (307)
Q Consensus       289 --~~~~~~i~~l~~~l~~  304 (307)
                        ++++++++.|++++++
T Consensus       382 t~e~i~~~~~~l~~~~~~  399 (400)
T 3vax_A          382 TDLDVEELARGVAKLKPS  399 (400)
T ss_dssp             ------------------
T ss_pred             CHHHHHHHHHHHHHHhcc
Confidence              6777777777776653

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.95  E-value=4.5e-27  Score=209.32  Aligned_cols=259  Identities=13%  Similarity=0.105  Sum_probs=180.0

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcC----C--CceEEE-EeCCC
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIG----P--WTKLVW-VESPT   70 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~----~--~~~~v~-~~~~~   70 (307)
                      |+ .++.+++++||+|+++.|+|+++.    ..++..|++++.++.+    |+++|++.++    +  ++++|+ +++++
T Consensus       152 al~~~~~~l~~~Gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~  227 (448)
T 3aow_A          152 ALDLIGRVFLNPGDIVVVEAPTYLAAL----QAFNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQ  227 (448)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSC
T ss_pred             HHHHHHHHHcCCCCEEEEeCCChHHHH----HHHHHcCCEEEEeccCCCCCCHHHHHHHHhhhhccCCCCeEEEECCCCC
Confidence            45 455567899999999999998887    5566789999999873    8899999886    5  789985 67999


Q ss_pred             CCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCc-----CCc---cCCCccEEEeccccccccCCCceeEEEEEcCh
Q 021783           71 NPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL-----SRP---LELGADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        71 n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~-----~~~---~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      ||||.+++   +++|.++|++||+++|+|++|+...+     ...   ...+.+++++||||++ + +|+|+||++++++
T Consensus       228 NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~-~-~GlriG~v~~~~~  305 (448)
T 3aow_A          228 NPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKIL-A-PGFRIGWMVGDPG  305 (448)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTT-C-GGGCCEEEEECHH
T ss_pred             CCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhc-c-ccccEEEEEeCHH
Confidence            99999986   67999999999999999999985432     112   2336789999999999 5 7999999999854


Q ss_pred             hHHHHHHHHHHhcCCCCChhhHHHHhhcccc------HHHHHHHHHHHHHHHHHHHhcC-C-CccEEecCCCCCCCchHH
Q 021783          140 RLAKELYFLQNAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASH-P-RVKKVNYAGLPEHPGHEL  211 (307)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~~~l~~~-~-~~~~~~~~~l~~~~~~~~  211 (307)
                       +.+.+...........+...+..+...++.      +....+.+.++.+.+.+.|++. + ++ .+..           
T Consensus       306 -l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~-~~~~-----------  372 (448)
T 3aow_A          306 -IIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGV-KWTK-----------  372 (448)
T ss_dssp             -HHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC-EECC-----------
T ss_pred             -HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCe-EEeC-----------
Confidence             555554443333233344555554444432      2223344445566666666542 2 11 1100           


Q ss_pred             HhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc---
Q 021783          212 HYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---  288 (307)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---  288 (307)
                           ...+.++++.++...+..++.+.+..+||.+.+|..|..                   .+..++++|||++.   
T Consensus       373 -----p~~g~~~~v~~~~~~~~~~l~~~l~~~gV~v~pg~~f~~-------------------~~~~~~~iRls~~~~~~  428 (448)
T 3aow_A          373 -----PEGGMFIWVTLPDGIDSKKMLERAIKKGVAYVPGEAFYA-------------------HRDVKNTMRLNFTYVDE  428 (448)
T ss_dssp             -----CSBSSEEEEECSTTCCHHHHHHHHHHTTEECEEGGGGST-------------------TCCCCSEEEEECSSSCT
T ss_pred             -----CCccEEEEEEcCCCCCHHHHHHHHHHCCcEEEcchhhcC-------------------CCCCCCEEEEEeCCCCH
Confidence                 113567788886433367788888778999988775321                   11235789999985   


Q ss_pred             CChHHHHHHHHHHHhc
Q 021783          289 EDVNDLISDLDKALRT  304 (307)
Q Consensus       289 ~~~~~~i~~l~~~l~~  304 (307)
                      +++++.++.|.+++++
T Consensus       429 e~i~~~~~~L~~~l~~  444 (448)
T 3aow_A          429 DKIMEGIKRLAETIKE  444 (448)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5788888888887754

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.95  E-value=6.2e-27  Score=202.57  Aligned_cols=247  Identities=19%  Similarity=0.204  Sum_probs=171.4

Q ss_pred             HH-HHHHHhcCCC-CeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccc
Q 021783            3 AL-AAVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         3 al-~~~~~~~~~g-d~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~   75 (307)
                      ++ .++.+++++| |+|+++.|+|+++.    ..++..|++++.++.+     |+++++++++ ++++|++++|+||||.
T Consensus        87 ai~~~~~~~~~~g~d~Vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~  161 (356)
T 1fg7_A           87 GIELLIRAFCEPGKDAILYCPPTYGMYS----VSAETIGVECRTVPTLDNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQ  161 (356)
T ss_dssp             HHHHHHHHHCCTTTCEEEECSSSCTHHH----HHHHHHTCEEEECCCCTTSCCCHHHHHTSCT-TEEEEEEESSCTTTCC
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCChHHHH----HHHHHcCCEEEEeeCCCCCCCCHHHHHHHhc-CCCEEEEeCCCCCCCC
Confidence            45 4555678899 99999999999887    5556689999999863     7899999988 8999999999999999


Q ss_pred             cccHHHH---HHHHHHcCCEEEEeCccCCCCc-C---C-ccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH
Q 021783           76 ICDIRKI---AEMAHAHGALLLVDNSIMSPVL-S---R-PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  147 (307)
Q Consensus        76 ~~~~~~l---~~~~~~~~~~li~D~a~~~~~~-~---~-~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~  147 (307)
                      +++.+++   +++|+ +|+++|+|++|+.... .   . ...++.+++++|+||++ |.+|+|+|+++++++ +.+.+..
T Consensus       162 ~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~-~~~~l~~  238 (356)
T 1fg7_A          162 LINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAF-ALAGLRCGFTLANEE-VINLLMK  238 (356)
T ss_dssp             CCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTT-CCGGGCCEEEEECHH-HHHHHHH
T ss_pred             CCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhh-cCchhhhEEEEeCHH-HHHHHHH
Confidence            9985554   55555 8999999999984331 1   1 13356899999999999 668999999999744 4444443


Q ss_pred             HHHhcCCCCChhhHHHHhhcccc-----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCce
Q 021783          148 LQNAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV  222 (307)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  222 (307)
                      ...  ....+...+..+...++.     +....+...++.+.+.+.|++.+.+.. ..                +..+++
T Consensus       239 ~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~----------------~~~~~~  299 (356)
T 1fg7_A          239 VIA--PYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQ-VF----------------DSETNY  299 (356)
T ss_dssp             HSC--SSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEE-EC----------------CCSSSE
T ss_pred             hcC--CCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceE-EC----------------CCCCeE
Confidence            322  223455556655555543     334445556666677777776542211 11                113667


Q ss_pred             EEEEeCCHHHHHHHHhcCCcceeecCC-CCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHH
Q 021783          223 LSFLTGSLALSKHVVETTKYFSITVSF-GSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA  301 (307)
Q Consensus       223 ~~~~~~~~~~~~~~~~~l~~~gi~v~~-g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~  301 (307)
                      +++.++   +..++.+.|.++||.++. |..+.                      . ++++|||++.   ++.++.+.++
T Consensus       300 ~~~~~~---~~~~l~~~L~~~gI~v~~~g~~~~----------------------~-~~~iRis~~~---~~e~~~~~~~  350 (356)
T 1fg7_A          300 ILARFK---ASSAVFKSLWDQGIILRDQNKQPS----------------------L-SGCLRITVGT---REESQRVIDA  350 (356)
T ss_dssp             EEEEET---THHHHHHHHHHTTEECEECTTSTT----------------------C-TTEEEEECCC---HHHHHHHHHH
T ss_pred             EEEECC---CHHHHHHHHHHCCEEEEECCCCCC----------------------C-CCeEEEEeCC---HHHHHHHHHH
Confidence            788886   356777888788999887 65421                      1 4579999984   4455555555


Q ss_pred             HhcC
Q 021783          302 LRTG  305 (307)
Q Consensus       302 l~~~  305 (307)
                      |+++
T Consensus       351 l~~~  354 (356)
T 1fg7_A          351 LRAE  354 (356)
T ss_dssp             HHTC
T ss_pred             HHhh
Confidence            5543

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.95  E-value=2.6e-28  Score=212.66  Aligned_cols=260  Identities=13%  Similarity=0.121  Sum_probs=180.9

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC---ChHHHHhhcCCCceEEEEeCCCCCcccccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---DLDEVASAIGPWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~   78 (307)
                      |+ .++.+++++||+|+++.|+|.++.    ..++..|++++.++.+   |++++++.++++++++++++|+||||.+++
T Consensus        93 a~~~~~~~~~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~  168 (377)
T 3fdb_A           93 GLYIAIDHFTPAQSKVIVPTPAYPPFF----HLLSATQREGIFIDATGGINLHDVEKGFQAGARSILLCNPYNPLGMVFA  168 (377)
T ss_dssp             HHHHHHHHHSCTTCCEEEEESCCTHHH----HHHHHHTCCEEEEECTTSCCHHHHHHHHHTTCCEEEEESSBTTTTBCCC
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCcHhHH----HHHHHcCCEEEEccCCCCCCHHHHHHHhccCCCEEEEeCCCCCCCCCCC
Confidence            45 455567899999999999999887    5567789999999986   899999999888999999999999999985


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCccCCCCcC------Cc---cCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH
Q 021783           79 ---IRKIAEMAHAHGALLLVDNSIMSPVLS------RP---LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  146 (307)
Q Consensus        79 ---~~~l~~~~~~~~~~li~D~a~~~~~~~------~~---~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~  146 (307)
                         +++|.++|++||+++|+|++|+.....      ..   ...+.+++++|+||++ |.+|+++|++++.++.+.+.+.
T Consensus       169 ~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~~~~  247 (377)
T 3fdb_A          169 PEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAW-NIAGLKCAQIIFSNPSDAEHWQ  247 (377)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTT-TCGGGCCEEEECCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhc-cCcchhheEEEeCCHHHHHHHH
Confidence               778888899999999999999752211      11   1235679999999999 6678999998886666666655


Q ss_pred             HHHHhcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhc-CCCccEEecCCCCCCCchHHHhhhccCCCc
Q 021783          147 FLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGAGS  221 (307)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (307)
                      ..........+...+..+...++.    ++...+...++.+.+.+.+++ .+++ .+..                ...+.
T Consensus       248 ~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~----------------~~~~~  310 (377)
T 3fdb_A          248 QLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGA-KITP----------------MQATY  310 (377)
T ss_dssp             HSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC-EECC----------------CSBCS
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCc-eEec----------------CCeeE
Confidence            444443444555555554444432    344455666677777777765 3332 1110                11233


Q ss_pred             eEEEEeCCHHHHHHHHhcCCc-ceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHHHH
Q 021783          222 VLSFLTGSLALSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDL  298 (307)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l  298 (307)
                      ++++.++......++.+.+.. .||.+++|..|...                     .++++|+|++.  +++++.++.|
T Consensus       311 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~---------------------~~~~~Ris~~~~~e~i~~~l~~l  369 (377)
T 3fdb_A          311 LMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGED---------------------GTGFCRLNFATSREVLEEAIDRM  369 (377)
T ss_dssp             EEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGG---------------------GTTEEEEECCSCHHHHHHHHHHH
T ss_pred             EEEEECcccCCCHHHHHHHHHhCCEEecCChhccCC---------------------CCCEEEEEeCCCHHHHHHHHHHH
Confidence            446776542111334444433 49999888764311                     25779999986  6677788888


Q ss_pred             HHHHhcC
Q 021783          299 DKALRTG  305 (307)
Q Consensus       299 ~~~l~~~  305 (307)
                      .+++++.
T Consensus       370 ~~~l~~~  376 (377)
T 3fdb_A          370 AKAVSHH  376 (377)
T ss_dssp             HHHHTTC
T ss_pred             HHHHhhc
Confidence            8887654

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.95  E-value=1.6e-27  Score=207.69  Aligned_cols=253  Identities=15%  Similarity=0.072  Sum_probs=173.6

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-----CChHHHHhhcCCCceEEEEeCCCCCcccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGPWTKLVWVESPTNPRQQI   76 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~~v~~~~~~n~tG~~   76 (307)
                      |+ .++.+++++||+|+++.|+|+++.    ..++..|++++.+|.     .|++++++.+++++++|++++|+||||.+
T Consensus        99 a~~~~~~~l~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~  174 (376)
T 2dou_A           99 GLAHLLLALTEPEDLLLLPEVAYPSYF----GAARVASLRTFLIPLREDGLADLKAVPEGVWREAKVLLLNYPNNPTGAV  174 (376)
T ss_dssp             HHHHHHHHHCCTTCEEEEESSCCHHHH----HHHHHTTCEEEEECBCTTSSBCGGGSCHHHHHHEEEEEECSSCTTTCCC
T ss_pred             HHHHHHHHhcCCCCEEEECCCCcHhHH----HHHHHcCCEEEEeeCCCCCCCCHHHHHHhhccCceEEEECCCCCCcCcc
Confidence            45 455567889999999999998887    556678999999986     37788888887788999999999999999


Q ss_pred             cc---HHHHHHHHHHcCCEEEEeCccCCCCc----CCc----cCCCccEEEeccccccccCCCceeEEEEEcChhHHHHH
Q 021783           77 CD---IRKIAEMAHAHGALLLVDNSIMSPVL----SRP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  145 (307)
Q Consensus        77 ~~---~~~l~~~~~~~~~~li~D~a~~~~~~----~~~----~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~  145 (307)
                      ++   +++|.++|++||+++|+|++|+.+..    ...    ...+.+++++|+||++ |.+|+|+|+++++++ +.+.+
T Consensus       175 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~-~~~~l  252 (376)
T 2dou_A          175 ADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSY-NLAGFRLGFALGSEE-ALARL  252 (376)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHH-TCGGGCCEEEEECHH-HHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhc-CChhheeEEEecCHH-HHHHH
Confidence            86   78899999999999999999975322    111    2236789999999999 567889999998754 55555


Q ss_pred             HHHHHhcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCc
Q 021783          146 YFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS  221 (307)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (307)
                      ...........+...+..+...++.    +....+...++.+.+.+.|++.  + .+..                ...+.
T Consensus       253 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~-~~~~----------------~~~~~  313 (376)
T 2dou_A          253 ERVKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV--L-SLLP----------------PRATM  313 (376)
T ss_dssp             HHHHHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT--S-EECC----------------CCBSS
T ss_pred             HHHHHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh--c-CccC----------------CCeeE
Confidence            5544444444455555555555543    2333444455566666666543  1 1110                11244


Q ss_pred             eEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHHHHH
Q 021783          222 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLD  299 (307)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~  299 (307)
                      ++++.++...+...+.+.|..+||.++.|..|..                     ..++++|||++.  +++++.++.|.
T Consensus       314 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~---------------------~~~~~~Ris~~~~~~~i~~~l~~l~  372 (376)
T 2dou_A          314 YLWGRLPEGVDDLEFGLRLVERGVALAPGRGFGP---------------------GGKGFVRIALVRPLEELLEAAKRIR  372 (376)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHTTEECEEGGGGCG---------------------GGTTEEEEECCSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCEEEcCchhhCC---------------------CCCCeEEEEecCCHHHHHHHHHHHH
Confidence            6777775432356788888778999988765321                     025679999986  34444444444


Q ss_pred             HH
Q 021783          300 KA  301 (307)
Q Consensus       300 ~~  301 (307)
                      ++
T Consensus       373 ~~  374 (376)
T 2dou_A          373 EA  374 (376)
T ss_dssp             HT
T ss_pred             HH
Confidence            43

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.95  E-value=8e-27  Score=206.71  Aligned_cols=256  Identities=15%  Similarity=0.083  Sum_probs=180.4

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++..++++||+|++++|+|.++.    ..++..|++++.++.+       |++++++.++++++++++++|+||||
T Consensus       130 al~~~~~~l~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG  205 (427)
T 3dyd_A          130 AIDLCLAVLANPGQNILVPRPGFSLYK----TLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCG  205 (427)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTHHH----HHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEEESSCTTTC
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCchhHH----HHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCEEEEECCCCCCC
Confidence            45 455567889999999999998877    5677889999988763       88999999998899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCc-----CCccCCC---ccEEEeccccccccCCCceeEEEEEcCh----
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELG---ADIVMHSATKFIAGHSDVMAGVLAVKGE----  139 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~-----~~~~~~~---~d~~~~s~~K~~~g~~g~~~G~~~~~~~----  139 (307)
                      .+++   +++|+++|+++|+++|+|++|+....     ......+   ..++++|+||.+ +.+|+|+|+++++++    
T Consensus       206 ~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~-~~~G~riG~~~~~~~~~~~  284 (427)
T 3dyd_A          206 SVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRW-LVPGWRLGWILIHDRRDIF  284 (427)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTS-SCGGGCCEEEEEECSTTSS
T ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccC-CCcCcceEEEEecCcchhh
Confidence            9999   99999999999999999999975321     1222222   348899999998 567999999999862    


Q ss_pred             --hHHHHHHHHHHhcCCCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHH
Q 021783          140 --RLAKELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  212 (307)
Q Consensus       140 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~  212 (307)
                        .+.+.+...... ....+...+..+...++     .+....+++.++.+.+.+.|++.+++. ...+           
T Consensus       285 ~~~i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~p-----------  351 (427)
T 3dyd_A          285 GNEIRDGLVKLSQR-ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLR-PVRP-----------  351 (427)
T ss_dssp             HHHHHHHHHHHHHH-HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEE-EECC-----------
T ss_pred             HHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCce-ecCC-----------
Confidence              344444433322 23344444444444443     244555666777777888887665431 1111           


Q ss_pred             hhhccCCCceEEEEeCCH-----HHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEe
Q 021783          213 YSQAKGAGSVLSFLTGSL-----ALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  286 (307)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~  286 (307)
                           ..+.++++.++..     ....++.+.+ +++||.+.+|..+.                       .++++|||+
T Consensus       352 -----~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~-----------------------~~~~iRis~  403 (427)
T 3dyd_A          352 -----SGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFE-----------------------YPNFIRVVI  403 (427)
T ss_dssp             -----SBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGT-----------------------CTTEEEEES
T ss_pred             -----CeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccC-----------------------CCCeEEEEE
Confidence                 1345666666521     2355666666 47899988876532                       156799999


Q ss_pred             cc--CChHHHHHHHHHHHhc
Q 021783          287 GI--EDVNDLISDLDKALRT  304 (307)
Q Consensus       287 ~~--~~~~~~i~~l~~~l~~  304 (307)
                      +.  +++++.++.|.+++++
T Consensus       404 ~~~~e~i~~~l~~l~~~l~~  423 (427)
T 3dyd_A          404 TVPEVMMLEACSRIQEFCEQ  423 (427)
T ss_dssp             CSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHH
Confidence            75  6777888888877754

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.95  E-value=3e-27  Score=209.11  Aligned_cols=264  Identities=21%  Similarity=0.216  Sum_probs=176.5

Q ss_pred             CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHH
Q 021783           12 GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA   86 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~   86 (307)
                      ++||+|+++.++|+++...+..+ +..|++++.++.+     |++++++.+++++++|++++++||||.+.|+++|.++|
T Consensus       111 ~~gd~Vl~~~~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~  189 (423)
T 3lvm_A          111 KKGKHIITSKTEHKAVLDTCRQL-EREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMC  189 (423)
T ss_dssp             TTCCEEEEETTSCHHHHHHHHHH-HHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHH
T ss_pred             cCCCEEEECCccchHHHHHHHHH-HHcCCEEEEeccCCCCccCHHHHHHhcCCCcEEEEEeCCCCCCccccCHHHHHHHH
Confidence            48999999999999887655433 6679999999985     89999999999999999999999999999999999999


Q ss_pred             HHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH------HhcCCCCChh
Q 021783           87 HAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ------NAEGSGLAPF  159 (307)
Q Consensus        87 ~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~------~~~~~~~~~~  159 (307)
                      ++||+++|+|++|+.+..+ +...++.|++++|+||++ |+.|  +|+++++++..........      .....+.+..
T Consensus       190 ~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~-g~~g--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (423)
T 3lvm_A          190 RARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIY-GPKG--IGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVH  266 (423)
T ss_dssp             HHHTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTT-SCSS--CEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHH
T ss_pred             HHcCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHhc-CCCC--eEEEEEeccccCCCCccccCCcccccccCCCCCHH
Confidence            9999999999999988764 566678999999999977 6677  8999988653322111000      0111222333


Q ss_pred             hHHHHhhccccH----HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHH
Q 021783          160 DCWICLRGVKTM----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKH  235 (307)
Q Consensus       160 ~~~~~~~~l~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (307)
                      .......+++.+    +...++..++.+.+.+.|++.+.+              ++..+.....++++.|.+.+.+ ...
T Consensus       267 ~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~-~~~  331 (423)
T 3lvm_A          267 QIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEV--------------YLNGDLEHGAPNILNVSFNYVE-GES  331 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTE--------------EEESCSTTBCTTEEEEEETTSC-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCE--------------EEeCCccccCCCeEEEEeCCCC-HHH
Confidence            333333333322    333444555556666666554432              1111111113467777775543 677


Q ss_pred             HHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCC----CCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          236 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       236 ~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                      +.+.|..  +.++.|..+.....        .+.......|..    ++++||+++.    ++++++++.|.+++++
T Consensus       332 l~~~l~~--i~v~~g~~~~~~~~--------~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~  398 (423)
T 3lvm_A          332 LIMALKD--LAVSSGSACTSASL--------EPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGR  398 (423)
T ss_dssp             HHHHTTT--EECBCCCC-----C--------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhh--heeccCccccCCCc--------cccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            7787876  88888876432110        112223334443    4889999984    5677777777777653

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.95  E-value=3.2e-28  Score=214.45  Aligned_cols=260  Identities=12%  Similarity=0.091  Sum_probs=180.3

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCC-CceEEEEeCCCCCccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP-WTKLVWVESPTNPRQQ   75 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~-~~~~v~~~~~~n~tG~   75 (307)
                      |+ .++.+++++||+|++++++|++..  +...++..|++++.++.+     |++++++.+++ ++++|++++++||||.
T Consensus        76 al~~~~~~~~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~  153 (411)
T 3nnk_A           76 GIEAILVSAIRPGDKVLVPVFGRFGHL--LCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTM  153 (411)
T ss_dssp             HHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTE
T ss_pred             HHHHHHHHhcCCCCEEEEecCCchHHH--HHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcce
Confidence            44 455667899999999999997632  226677889999999985     89999999985 8999999999999999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH-----
Q 021783           76 ICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-----  149 (307)
Q Consensus        76 ~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~-----  149 (307)
                      +.|+++|.++|++||+++|+|++|+.+..+ +...+++|++++|+||+++++.|  +|+++++++.. +.+....     
T Consensus       154 ~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~g--~g~~~~~~~~~-~~~~~~~~~~~~  230 (411)
T 3nnk_A          154 LQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSG--TSPITLSARME-EAIRRRKCVEEG  230 (411)
T ss_dssp             ECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCCSS--EEEEEECHHHH-HHHHTTCCCCGG
T ss_pred             eccHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccCCCCc--eEEEEECHHHH-HHHhhccccccc
Confidence            999999999999999999999999887765 66667899999999999767777  89999986543 3332211     


Q ss_pred             -------------------------------HhcCCCCChhhHHHHhhcccc-----HHHHHHHHHHHHHHHHHHHhcCC
Q 021783          150 -------------------------------NAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHP  193 (307)
Q Consensus       150 -------------------------------~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~  193 (307)
                                                     .....+.+.........+++.     ++...++..++.+.+.+.|++. 
T Consensus       231 ~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-  309 (411)
T 3nnk_A          231 IRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAM-  309 (411)
T ss_dssp             GCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             ccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-
Confidence                                           000112222222222233322     3344455566666677767653 


Q ss_pred             CccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcc-eeecCCCCccceeecccccCCCCCcHHHH
Q 021783          194 RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVEVR  272 (307)
Q Consensus       194 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~p~~~~~~~~~~~~~  272 (307)
                      ++        .-      ..+.....+.++++.++......++.+.|.++ ||.++.|..                    
T Consensus       310 g~--------~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~--------------------  355 (411)
T 3nnk_A          310 GL--------ET------FGDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFG--------------------  355 (411)
T ss_dssp             TC--------CB------CSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCG--------------------
T ss_pred             CC--------Ee------CCCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccC--------------------
Confidence            11        10      00011123667888885333367788877665 998876632                    


Q ss_pred             HhcCCCCCeEEEEe-cc----CChHHHHHHHHHHHhcC
Q 021783          273 QARGLTEDLVRISV-GI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       273 ~~~~~~~~~iRis~-~~----~~~~~~i~~l~~~l~~~  305 (307)
                         ...++++||++ +.    ++++++++.|.++++++
T Consensus       356 ---~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~  390 (411)
T 3nnk_A          356 ---PLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYL  390 (411)
T ss_dssp             ---GGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred             ---CCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence               11256799998 53    66888888888887654

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.95  E-value=3.4e-27  Score=207.67  Aligned_cols=258  Identities=16%  Similarity=0.078  Sum_probs=179.4

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG~   75 (307)
                      |+ .++.+++++||+|+++.|+|+++.    ..++..|++++.++.+      |++++++.+++++++|++++|+||||.
T Consensus       121 al~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~  196 (404)
T 2o1b_A          121 GLVAVPTCVINPGDYVLLPDPGYTDYL----AGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGS  196 (404)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCSSHH----HHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECSSCTTTCC
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCchhHH----HHHHHCCCEEEEeccCcccCcCCHHHHHHhhccCceEEEEcCCCCCCCc
Confidence            44 455567889999999999999988    5566789999998863      678888888778899999999999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCccCCCCc----CCccC----CCccEEEeccccccccCCCceeEEEEEcChhHHHH
Q 021783           76 ICD---IRKIAEMAHAHGALLLVDNSIMSPVL----SRPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  144 (307)
Q Consensus        76 ~~~---~~~l~~~~~~~~~~li~D~a~~~~~~----~~~~~----~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~  144 (307)
                      +++   +++|.++|+++|+++|+|++|+....    .....    .+.+++++|+||++ |.+|+|+|+++++++ +.+.
T Consensus       197 ~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~-~~~~  274 (404)
T 2o1b_A          197 TATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGY-NMSGFRVGFAVGNKD-MIQA  274 (404)
T ss_dssp             CCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTT-TCGGGCCEEEEECHH-HHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhc-cCchhheEeEecCHH-HHHH
Confidence            985   78999999999999999999985432    12222    25789999999999 557889999998754 5555


Q ss_pred             HHHHHHhcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCC
Q 021783          145 LYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG  220 (307)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  220 (307)
                      +...........+...+..+...++.    ++...+...++.+.+.+.|++. ++. +..                ...+
T Consensus       275 l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~----------------~~~g  336 (404)
T 2o1b_A          275 LKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA-DLP-FVH----------------AKGG  336 (404)
T ss_dssp             HHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCC-EEC----------------CCBS
T ss_pred             HHHHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCe-ecC----------------CCcc
Confidence            55544444444555555555444432    3333444556666677777654 221 110                1123


Q ss_pred             ceEEEEeCCHHHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHHH
Q 021783          221 SVLSFLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISD  297 (307)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~  297 (307)
                      .++++.++...+..++.+.+. .+||.++.|..|..                     ..++++|||++.  +++++.++.
T Consensus       337 ~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~---------------------~~~~~iRis~~~~~e~l~~~l~~  395 (404)
T 2o1b_A          337 IYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGE---------------------NGNRYVRISLALDDQKLDEAAIR  395 (404)
T ss_dssp             SEEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCG---------------------GGTTEEEEECCSCTTHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCc---------------------CCCCeEEEEEcCCHHHHHHHHHH
Confidence            457777753323566777765 57999988776321                     025679999985  567777777


Q ss_pred             HHHHHhcC
Q 021783          298 LDKALRTG  305 (307)
Q Consensus       298 l~~~l~~~  305 (307)
                      |.+++++.
T Consensus       396 l~~~l~~~  403 (404)
T 2o1b_A          396 LTELAYLY  403 (404)
T ss_dssp             HHGGGGGG
T ss_pred             HHHHHHhh
Confidence            77777653

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.95  E-value=1.2e-26  Score=203.11  Aligned_cols=257  Identities=14%  Similarity=0.164  Sum_probs=176.9

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC--------CChHHHHhhcCC-CceEEEEeCCCCC
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIGP-WTKLVWVESPTNP   72 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~--------~d~~~l~~~l~~-~~~~v~~~~~~n~   72 (307)
                      |+ .++.+++++||+|+++.|+|+++.    ..++..|++++.+|.        .|++++++.+++ ++++|++++|+||
T Consensus        99 al~~~~~~l~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~np  174 (390)
T 1d2f_A           99 MVSELIRQWSETGEGVVIHTPAYDAFY----KAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNP  174 (390)
T ss_dssp             HHHHHHHHSSCTTCEEEEEESCCHHHH----HHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTT
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCcHHHH----HHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCC
Confidence            45 455567899999999999998887    556678999998886        378999999985 8999999999999


Q ss_pred             cccccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-----CccCCC--c-cEEEeccccccccCCCceeEEEEEcChhH
Q 021783           73 RQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELG--A-DIVMHSATKFIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        73 tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~~~~~--~-d~~~~s~~K~~~g~~g~~~G~~~~~~~~~  141 (307)
                      ||.+++   +++|.++|++||+++|+|++|+.....     .....+  . |. ++|+||++ |++|+|+|+++++++.+
T Consensus       175 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~-~~~G~r~G~~~~~~~~~  252 (390)
T 1d2f_A          175 TGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSF-NIPALTGAYGIIENSSS  252 (390)
T ss_dssp             TCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHH-TCGGGCCEEEEECSHHH
T ss_pred             CCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhh-cccChhheEEEECCHHH
Confidence            999987   899999999999999999999854321     222222  1 66 99999999 66788999999976666


Q ss_pred             HHHHHHHHH-hcCC-CCChhhHHHHhhccc----cHHHHHHHHHHHHHHHHHHHhc-CCCccEEecCCCCCCCchHHHhh
Q 021783          142 AKELYFLQN-AEGS-GLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYS  214 (307)
Q Consensus       142 ~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~l~~~~~~~~~~~  214 (307)
                      .+.+..... .... +.+...+..+...++    .++...+...++.+.+.+.|++ .+++        .-.        
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~--------~~~--------  316 (390)
T 1d2f_A          253 RDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPEL--------NWQ--------  316 (390)
T ss_dssp             HHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSC--------CCC--------
T ss_pred             HHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--------EEe--------
Confidence            665555444 2232 444445444444443    2233344455666666776765 3322        111        


Q ss_pred             hccCCC-ceEEEEeCCH-HHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--C
Q 021783          215 QAKGAG-SVLSFLTGSL-ALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--E  289 (307)
Q Consensus       215 ~~~~~~-~~~~~~~~~~-~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~  289 (307)
                        +..+ .++++.++.. .+...+.+.|. .+||.+++|..|..                     ..++++|||++.  +
T Consensus       317 --~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~---------------------~~~~~~Ris~~~~~~  373 (390)
T 1d2f_A          317 --IPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGE---------------------EGRGFVRLNAGCPRS  373 (390)
T ss_dssp             --CCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCG---------------------GGTTEEEEECCSCHH
T ss_pred             --cCCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCC---------------------CCCCeEEEEecCCHH
Confidence              1123 3446777532 13667888887 68999988776321                     025679999986  4


Q ss_pred             ChHHHHHHHHHHHhc
Q 021783          290 DVNDLISDLDKALRT  304 (307)
Q Consensus       290 ~~~~~i~~l~~~l~~  304 (307)
                      ++++.++.|.+++++
T Consensus       374 ~l~~~l~~l~~~l~~  388 (390)
T 1d2f_A          374 KLEKGVAGLINAIRA  388 (390)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            566666666666654

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.95  E-value=8.5e-27  Score=202.27  Aligned_cols=253  Identities=14%  Similarity=0.163  Sum_probs=175.5

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCC------hHHHHhhcCCCceEEEEeCCCCCcccc
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD------LDEVASAIGPWTKLVWVESPTNPRQQI   76 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d------~~~l~~~l~~~~~~v~~~~~~n~tG~~   76 (307)
                      |+.++...+ +||+|+++.|+|+++.    ..++..|++++.+|.++      ++++.+.++++++++++++|+||||.+
T Consensus        88 al~~~~~~~-~gd~vl~~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~v~i~~p~nptG~~  162 (364)
T 1lc5_A           88 SIFTVASGL-KPRRAMIVTPGFAEYG----RALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLL  162 (364)
T ss_dssp             HHHHHHHHH-CCSEEEEEESCCTHHH----HHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCC
T ss_pred             HHHHHHHHc-CCCeEEEeCCCcHHHH----HHHHHcCCeEEEEeCCcccccchhHHHHHhccCCCCEEEEeCCCCCCCCC
Confidence            453333334 7899999999998887    55667899999998752      355666677788999999999999999


Q ss_pred             cc---HHHHHHHHHHcCCEEEEeCccCCCCc------CCccCCCccEEEeccccccccCCCceeEEEE-EcChhHHHHHH
Q 021783           77 CD---IRKIAEMAHAHGALLLVDNSIMSPVL------SRPLELGADIVMHSATKFIAGHSDVMAGVLA-VKGERLAKELY  146 (307)
Q Consensus        77 ~~---~~~l~~~~~~~~~~li~D~a~~~~~~------~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~-~~~~~~~~~~~  146 (307)
                      ++   +++|.++|++||+++|+|++|+.+..      ......+.+++++|+||++ |.+|+|+|+++ .+ +.+.+.+.
T Consensus       163 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~-~~~~~~l~  240 (364)
T 1lc5_A          163 PERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFY-AIPGLRLGYLVNSD-DAAMARMR  240 (364)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTT-TCTTTCCEEEECCC-HHHHHHHH
T ss_pred             CCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhh-cCCccceEEEEECC-HHHHHHHH
Confidence            98   89999999999999999999974332      1123457899999999999 56788999999 66 44544444


Q ss_pred             HHHHhcCCCCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceE
Q 021783          147 FLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  223 (307)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  223 (307)
                      ....  ....+...+..+...++.   ++...+.+.++.+.+.+.+++.+++. + .                +..++++
T Consensus       241 ~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~-~----------------~~~g~~~  300 (364)
T 1lc5_A          241 RQQM--PWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLT-V-Y----------------PGRANYL  300 (364)
T ss_dssp             HHSC--TTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEE-E-C----------------CCSSSEE
T ss_pred             HhCC--CCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCE-E-C----------------CCCCeEE
Confidence            3322  234555666666666654   33344455566667777776554321 1 1                1135677


Q ss_pred             EEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHH
Q 021783          224 SFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKAL  302 (307)
Q Consensus       224 ~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l  302 (307)
                      ++.+++.  ...+.+.|..+||.++.|..+.                     +..++++|||++. ++++++++.|.+.+
T Consensus       301 ~~~~~~~--~~~l~~~l~~~gi~v~~g~~~~---------------------~~~~~~iRis~~~~~~~~~l~~~l~~~~  357 (364)
T 1lc5_A          301 LLRCERE--DIDLQRRLLTQRILIRSCANYP---------------------GLDSRYYRVAIRSAAQNERLLAALRNVL  357 (364)
T ss_dssp             EEEESCT--TCCHHHHHHTTTEECEECTTST---------------------TCCTTEEEEECCCHHHHHHHHHHHHHHC
T ss_pred             EEECCCc--HHHHHHHHHHCCcEEeeCcccC---------------------CCCCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence            8877531  3456666667799998877532                     1135789999985 56677888888777


Q ss_pred             hcC
Q 021783          303 RTG  305 (307)
Q Consensus       303 ~~~  305 (307)
                      +++
T Consensus       358 ~~~  360 (364)
T 1lc5_A          358 TGI  360 (364)
T ss_dssp             ---
T ss_pred             hcc
Confidence            643

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.95  E-value=1.1e-26  Score=204.13  Aligned_cols=266  Identities=18%  Similarity=0.220  Sum_probs=181.1

Q ss_pred             HH-HHHHHh----cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCC
Q 021783            3 AL-AAVTHL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNP   72 (307)
Q Consensus         3 al-~~~~~~----~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~   72 (307)
                      |+ .++.++    +++||+|++++++|++....+...++..|++++.++.+     |++++++++++++++|++++++||
T Consensus        97 a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~np  176 (406)
T 1kmj_A           97 GINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNV  176 (406)
T ss_dssp             HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTT
T ss_pred             HHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhccCCeEEEEeCCCcc
Confidence            44 445556    78999999999999988766666677889999999874     789999999989999999999999


Q ss_pred             ccccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHh
Q 021783           73 RQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  151 (307)
Q Consensus        73 tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~  151 (307)
                      ||.+.|+++|.++|++||+++|+|++|+.+..+ +....+.|++++|+||.+ |++|  +|+++++++ +.+.+......
T Consensus       177 tG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~-g~~G--~G~~~~~~~-~~~~~~~~~~~  252 (406)
T 1kmj_A          177 LGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLY-GPTG--IGILYVKEA-LLQEMPPWEGG  252 (406)
T ss_dssp             TCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTT-SCTT--CEEEEECHH-HHHHCCCSSCS
T ss_pred             ccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEEchhcc-CCCC--cEEEEEeHH-HHhhcCCcccC
Confidence            999999999999999999999999999987654 444457999999999999 7777  799999844 43333211100


Q ss_pred             ---------------------cCCCCChhhHHHHh-hccccH-----HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCC
Q 021783          152 ---------------------EGSGLAPFDCWICL-RGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP  204 (307)
Q Consensus       152 ---------------------~~~~~~~~~~~~~~-~~l~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~  204 (307)
                                           .....+...+..+. .+++.+     ....+...++.+.+.+.|++.+++ .+..+   
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~---  328 (406)
T 1kmj_A          253 GSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDL-TLYGP---  328 (406)
T ss_dssp             TTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTE-EEESC---
T ss_pred             CCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCe-EEecC---
Confidence                                 00112223333222 333322     233444455666666666654332 11111   


Q ss_pred             CCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEE
Q 021783          205 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI  284 (307)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRi  284 (307)
                                .  ..++++.|.+++.+ ...+.+.|..+||.++.|..+..   |           .....|. ++++|+
T Consensus       329 ----------~--~~~~~~~~~~~~~~-~~~~~~~l~~~gi~v~~g~~~~~---~-----------~~~~~g~-~~~iRi  380 (406)
T 1kmj_A          329 ----------Q--NRLGVIAFNLGKHH-AYDVGSFLDNYGIAVRTGHHCAM---P-----------LMAYYNV-PAMCRA  380 (406)
T ss_dssp             ----------T--TCCSEEEEEETTCC-HHHHHHHHHHTTEECEEECTTCH---H-----------HHHHTTC-SCEEEE
T ss_pred             ----------C--CcCCEEEEEECCCC-HHHHHHHHhhCCcEEEeccccch---H-----------HHHhcCC-CCeEEE
Confidence                      0  13678888876433 56677888888999887765221   1           0011221 578999


Q ss_pred             EeccC----ChHHHHHHHHHHHhc
Q 021783          285 SVGIE----DVNDLISDLDKALRT  304 (307)
Q Consensus       285 s~~~~----~~~~~i~~l~~~l~~  304 (307)
                      |++..    +++++++.|.++++.
T Consensus       381 s~~~~~t~~~i~~~~~~l~~~~~~  404 (406)
T 1kmj_A          381 SLAMYNTHEEVDRLVTGLQRIHRL  404 (406)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EeecCCCHHHHHHHHHHHHHHHHh
Confidence            99964    566666666666543

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.95  E-value=3.4e-27  Score=207.76  Aligned_cols=259  Identities=16%  Similarity=0.123  Sum_probs=177.4

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++++||+|++++|+|+++.    ..++..|++++.+|.+       |++++++.+++++++|++++|+||||
T Consensus       113 al~~~~~~l~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG  188 (406)
T 1xi9_A          113 ALQLIFGALLDPGDEILVPGPSYPPYT----GLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTG  188 (406)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTC
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCCccHH----HHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEEEECCCCCCC
Confidence            44 445557899999999999998877    5566789999888763       78999999998899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCcC----CccC--CCc-cEEEeccccccccCCCceeEEEE--EcCh---
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RPLE--LGA-DIVMHSATKFIAGHSDVMAGVLA--VKGE---  139 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~----~~~~--~~~-d~~~~s~~K~~~g~~g~~~G~~~--~~~~---  139 (307)
                      .+++   +++|.++|++||+++|+|++|+.+...    ....  .+. +++++|+||++ +++|+|+|+++  .+++   
T Consensus       189 ~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~~~  267 (406)
T 1xi9_A          189 ALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVY-FATGWRLGYMYFVDPENKLS  267 (406)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTT-CCGGGCCEEEEEECTTCTTH
T ss_pred             CCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEecccccc-CCCccEEEEEEEecCchhHH
Confidence            9976   999999999999999999999864331    1112  367 89999999999 56788999998  7651   


Q ss_pred             hHHHHHHHHHHhcCCCCChhhHHHHhhccc----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhh
Q 021783          140 RLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ  215 (307)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  215 (307)
                      .+.+.+....... ...+...+..+...++    .++...+...++.+.+.+.|++.+++              .+.  .
T Consensus       268 ~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~--------------~~~--~  330 (406)
T 1xi9_A          268 EVREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGI--------------STT--K  330 (406)
T ss_dssp             HHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTE--------------ECC--C
T ss_pred             HHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCCCC--------------eee--c
Confidence            4555554444333 3344444444444442    23334455556666666777654322              111  0


Q ss_pred             ccCCCceEEEEeCC--HHHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CC
Q 021783          216 AKGAGSVLSFLTGS--LALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--ED  290 (307)
Q Consensus       216 ~~~~~~~~~~~~~~--~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~  290 (307)
                       ...+.++++.++.  ..+..++.+.+. .+||.++.|..|..                     ..++++|||++.  ++
T Consensus       331 -~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~---------------------~~~~~lRis~~~~~~~  388 (406)
T 1xi9_A          331 -PQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGE---------------------YGAGHFRAVFLPPIEI  388 (406)
T ss_dssp             -CCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCG---------------------GGTTBEEEECCSCHHH
T ss_pred             -CCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCC---------------------CCCCEEEEEecCCHHH
Confidence             0113334446642  123667777775 78998888765321                     025679999984  56


Q ss_pred             hHHHHHHHHHHHhcC
Q 021783          291 VNDLISDLDKALRTG  305 (307)
Q Consensus       291 ~~~~i~~l~~~l~~~  305 (307)
                      +++.++.|.++++++
T Consensus       389 i~~~~~~l~~~l~~~  403 (406)
T 1xi9_A          389 LEEAMDRFEKFMKER  403 (406)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHH
Confidence            677777777777653

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.95  E-value=9e-27  Score=204.32  Aligned_cols=259  Identities=17%  Similarity=0.129  Sum_probs=177.8

Q ss_pred             HH-HHHHHhcCCC-----CeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCC
Q 021783            3 AL-AAVTHLLGTG-----EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPT   70 (307)
Q Consensus         3 al-~~~~~~~~~g-----d~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~   70 (307)
                      |+ .++.+++++|     |+|+++.|+|.++.    ..++..|++++.++.+      |+++++++++++++++++++|+
T Consensus       103 al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~  178 (396)
T 3jtx_A          103 ALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYE----GATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPN  178 (396)
T ss_dssp             HHHHHHHHHCCC---CCCCEEEEEESCCHHHH----HHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEESSC
T ss_pred             HHHHHHHHHhCCCCccCCCEEEEcCCCcHhHH----HHHHHcCCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEECCC
Confidence            45 4455678886     79999999998877    5567789999999863      7788888888889999999999


Q ss_pred             CCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-----Cc--------cCCCccEEEeccccccccCCCceeEEE
Q 021783           71 NPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RP--------LELGADIVMHSATKFIAGHSDVMAGVL  134 (307)
Q Consensus        71 n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~--------~~~~~d~~~~s~~K~~~g~~g~~~G~~  134 (307)
                      ||||.+++   +++|+++|++||+++|+|++|+.....     ..        ...+.++++.|+||.+ +.+|+|+|++
T Consensus       179 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~  257 (396)
T 3jtx_A          179 NPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRS-NVPGLRSGFV  257 (396)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTS-SCGGGCCEEE
T ss_pred             CCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEecccccc-CCcccceEEE
Confidence            99999987   555999999999999999999853321     11        1257899999999988 5678999999


Q ss_pred             EEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccc---cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHH
Q 021783          135 AVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL  211 (307)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~  211 (307)
                      +.++ .+.+.+.......+...+...+..+...++   .+....+.+.++.+.+.+.+++...   +       .     
T Consensus       258 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~-------~-----  321 (396)
T 3jtx_A          258 AGDA-ELLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQVFD---V-------K-----  321 (396)
T ss_dssp             EECH-HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTTSC---C-------C-----
T ss_pred             EeCH-HHHHHHHHHHhhcccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCC---c-------c-----
Confidence            8864 455555555555555555555555544442   3344445555666666666654310   0       0     


Q ss_pred             HhhhccCCCceEEEEeCCHHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--
Q 021783          212 HYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--  288 (307)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--  288 (307)
                         . ...+.++++.++.. ....+.+.| +++||.+++|..|......               .+..++++|||++.  
T Consensus       322 ---~-~~~~~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~~---------------~~~~~~~iRis~~~~~  381 (396)
T 3jtx_A          322 ---L-PDASFYIWLKVPDG-DDLAFARNLWQKAAIQVLPGRFLARDTEQ---------------GNPGEGYVRIALVADV  381 (396)
T ss_dssp             ---C-CSSSSEEEEECTTS-CHHHHHHHHHHHHCEECEEGGGGCCCCTT---------------CCTTTTEEEEECCSCH
T ss_pred             ---C-CCeeEEEEEECCCC-CHHHHHHHHHHHCCEEEeCChHhCCcccc---------------cCCCCCeEEEEEcCCH
Confidence               0 11356777787653 356666766 5569999988874421100               12246889999986  


Q ss_pred             CChHHHHHHHHHHH
Q 021783          289 EDVNDLISDLDKAL  302 (307)
Q Consensus       289 ~~~~~~i~~l~~~l  302 (307)
                      +++++.++.|.+++
T Consensus       382 ~~i~~~l~~l~~~l  395 (396)
T 3jtx_A          382 ATCVKAAEDIVSLY  395 (396)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHh
Confidence            45555566655543

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.95  E-value=7.4e-27  Score=206.00  Aligned_cols=258  Identities=13%  Similarity=0.097  Sum_probs=179.0

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++++||+|++++|+|+++.    ..++..|++++.++.+       |++++++++++++++|++++|+||||
T Consensus       111 a~~~~~~~~~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~~p~nptG  186 (412)
T 2x5d_A          111 GLAHLMLATLDHGDTILVPNPSYPIHI----YGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTA  186 (412)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEESSCTTTC
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCchhHH----HHHHHcCCEEEEeecCCccCCCCCHHHHHHhcccCceEEEECCCCCCCC
Confidence            44 445557899999999999998887    4556679999998874       46888888888899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-----CccC----CCccEEEeccccccccCCCceeEEEEEcChhHH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  142 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~~~----~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~  142 (307)
                      .+++   +++|.++|++||+++|+|++|+.+...     ....    .+.+++++|+||++ |.+|+|+|+++++++ +.
T Consensus       187 ~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~-~~  264 (412)
T 2x5d_A          187 QCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSY-NMAGWRIGFMVGNPE-LV  264 (412)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CC-SCTTSCCEEEEECHH-HH
T ss_pred             CcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCcccc-CCcccceEEEEcCHH-HH
Confidence            9986   789999999999999999999864321     1122    36899999999999 667889999999744 55


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          143 KELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      +.+...........+...+..+...++.    +....+...++.+.+.+.|++. ++        .-.        . ..
T Consensus       265 ~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~--------~~~--------~-~~  326 (412)
T 2x5d_A          265 SALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA-GW--------MVE--------N-PK  326 (412)
T ss_dssp             HHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH-TC--------CCC--------C-CS
T ss_pred             HHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CC--------Eec--------C-CC
Confidence            5555544444444555555544444432    3444555566666677777643 11        101        0 11


Q ss_pred             CCceEEEEeCCHH---HHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChH
Q 021783          219 AGSVLSFLTGSLA---LSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVN  292 (307)
Q Consensus       219 ~~~~~~~~~~~~~---~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~  292 (307)
                      .+.++++.++...   +...+.+.|. .+||.++.|..|..                     ..++++|||++.  ++++
T Consensus       327 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~---------------------~~~~~iRis~~~~~~~l~  385 (412)
T 2x5d_A          327 ASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGD---------------------YGDDHVRFALIENRDRLR  385 (412)
T ss_dssp             BSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCG---------------------GGTTEEEEECCSCHHHHH
T ss_pred             eeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCC---------------------CCCCeEEEEecCCHHHHH
Confidence            2446677775321   3667777774 46999988765321                     025679999986  5677


Q ss_pred             HHHHHHHHHHhcC
Q 021783          293 DLISDLDKALRTG  305 (307)
Q Consensus       293 ~~i~~l~~~l~~~  305 (307)
                      +.++.|.+++++.
T Consensus       386 ~~l~~l~~~l~~~  398 (412)
T 2x5d_A          386 QAVRGIKAMFRAD  398 (412)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            7777777777643

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.95  E-value=9.7e-27  Score=203.84  Aligned_cols=256  Identities=16%  Similarity=0.142  Sum_probs=179.9

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++++||+|+++.|+|.++.    ..++..|++++.++.+       |++++++.   ++++|++++|+||||
T Consensus       103 al~~~~~~l~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~---~~~~v~i~~p~nptG  175 (391)
T 3h14_A          103 GFLLAFTALFDSGDRVGIGAPGYPSYR----QILRALGLVPVDLPTAPENRLQPVPADFAGL---DLAGLMVASPANPTG  175 (391)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHHTTCEEEEEECCGGGTTSCCHHHHTTS---CCSEEEEESSCTTTC
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCCccHH----HHHHHcCCEEEEeecCcccCCCCCHHHHHhc---CCeEEEECCCCCCCC
Confidence            45 455567899999999999998887    5567789999999874       77888776   789999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCc----CCccC-CCccEEEeccccccccCCCceeEEEEEcChhHHHHHH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVL----SRPLE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  146 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~----~~~~~-~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~  146 (307)
                      .+++   +++|+++|++||+++|+|++|+....    ..... .+.+++++|+||++ |++|+++|+++++++ +.+.+.
T Consensus       176 ~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~-~~~~~~  253 (391)
T 3h14_A          176 TMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYF-SMTGWRVGWMVVPED-QVRVVE  253 (391)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTT-CCTTSCCEEEECCGG-GHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhcc-CCccceeEEEEeCHH-HHHHHH
Confidence            9997   88999999999999999999984332    12222 36789999999999 677999999999865 545555


Q ss_pred             HHHHhcCCCCChhhHHHHhhccc---cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceE
Q 021783          147 FLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  223 (307)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  223 (307)
                      ..........+...+..+...++   .+....+.+.++.+.+.+.+++.+.. ..       .        . ...+.++
T Consensus       254 ~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~-------~--------~-~~~~~~~  316 (391)
T 3h14_A          254 RIAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKAGFT-RI-------A--------P-PDGAFYV  316 (391)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CB-------C--------C-CCBTTEE
T ss_pred             HHHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcCCC-cc-------c--------C-CCeeEEE
Confidence            55554444555555555444443   34445556666666777777654211 00       0        0 1123456


Q ss_pred             EEEeCC-HHHHHHHHhcCCc-ceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHHHHH
Q 021783          224 SFLTGS-LALSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLD  299 (307)
Q Consensus       224 ~~~~~~-~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~  299 (307)
                      ++.++. ..+..++.+.+.. +||.+++|..|..                    +..++++|+|++.  +++++.++.|.
T Consensus       317 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--------------------~~~~~~iRis~~~~~~~i~~~l~~l~  376 (391)
T 3h14_A          317 YADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDP--------------------ERGAGTLRFSYARATADIEEGLDRLE  376 (391)
T ss_dssp             EEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCT--------------------TTGGGEEEEECCSCHHHHHHHHHHHH
T ss_pred             EEecCccCCCHHHHHHHHHHHCCEEEcCchhhCC--------------------CCCCCeEEEEecCCHHHHHHHHHHHH
Confidence            666653 2236777777655 4999988876431                    0125679999986  56777777777


Q ss_pred             HHHhc
Q 021783          300 KALRT  304 (307)
Q Consensus       300 ~~l~~  304 (307)
                      +++++
T Consensus       377 ~~~~~  381 (391)
T 3h14_A          377 AFMQA  381 (391)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.95  E-value=2.1e-26  Score=204.12  Aligned_cols=262  Identities=18%  Similarity=0.133  Sum_probs=179.8

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC---------------CChHHHHhhcCCCceEEEE
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---------------CDLDEVASAIGPWTKLVWV   66 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------------~d~~~l~~~l~~~~~~v~~   66 (307)
                      |+ .++.+++++||+|+++.|+|+++.    ..++..|++++.+|.               .|++++++.+++++++|++
T Consensus       113 a~~~~~~~~~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~  188 (429)
T 1yiz_A          113 ALYATIQGHVDEGDEVIIIEPFFDCYE----PMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIII  188 (429)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEE
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCchhHH----HHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceEEEE
Confidence            44 455567899999999999999887    455678999988875               3689999999889999999


Q ss_pred             eCCCCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCc------C--Cc-cCCCccEEEeccccccccCCCceeEEE
Q 021783           67 ESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL------S--RP-LELGADIVMHSATKFIAGHSDVMAGVL  134 (307)
Q Consensus        67 ~~~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~------~--~~-~~~~~d~~~~s~~K~~~g~~g~~~G~~  134 (307)
                      ++|+||||.+++   +++|.++|++||+++|+|++|+....      +  .. ...++|++++|+||++ +++|+|+|++
T Consensus       189 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~-~~~G~r~G~~  267 (429)
T 1yiz_A          189 NTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTF-SLTGWKIGWA  267 (429)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHH-TCGGGCCEEE
T ss_pred             CCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhcc-CCCCcceEEE
Confidence            999999999985   99999999999999999999974221      1  11 1357899999999999 5678999999


Q ss_pred             EEcChhHHHHHHHHHHhcCCCCChhhHHHHhhcccc-----------HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCC
Q 021783          135 AVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-----------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL  203 (307)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l  203 (307)
                      +++++ +.+.+...........+...+..+...++.           +....+...++.+.+.+.|++. ++ .+..   
T Consensus       268 ~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~---  341 (429)
T 1yiz_A          268 YGPEA-LLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GM-NPTV---  341 (429)
T ss_dssp             ESCHH-HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-TC-EEEE---
T ss_pred             EeCHH-HHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC-CC-cccC---
Confidence            99754 555555444433333444434333333322           3333444555666666666643 11 1111   


Q ss_pred             CCCCchHHHhhhccCCCceEEEEeCCH------------HHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHH
Q 021783          204 PEHPGHELHYSQAKGAGSVLSFLTGSL------------ALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVE  270 (307)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~  270 (307)
                                   ...+.++++.+++.            ....++.+.+. ++||.+++|..|...  +           
T Consensus       342 -------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~--~-----------  395 (429)
T 1yiz_A          342 -------------PQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSE--P-----------  395 (429)
T ss_dssp             -------------CSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCG--G-----------
T ss_pred             -------------CCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCC--c-----------
Confidence                         11355777887542            23567777764 689999887653210  0           


Q ss_pred             HHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 021783          271 VRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  304 (307)
Q Consensus       271 ~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  304 (307)
                         ..+..++++|||++.  +++++.++.|.+++++
T Consensus       396 ---~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~  428 (429)
T 1yiz_A          396 ---NKHLGEDFVRYCFFKKDENLQKAAEILRKWKGS  428 (429)
T ss_dssp             ---GGGGTTTEEEEECCSCHHHHHHHHHHHHHHSCC
T ss_pred             ---ccCCCCCeEEEEecCCHHHHHHHHHHHHHhccC
Confidence               001125789999985  5677777777777654

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.95  E-value=6.3e-27  Score=207.95  Aligned_cols=264  Identities=14%  Similarity=0.102  Sum_probs=184.9

Q ss_pred             HH-HHHHHhc--CCCC--eEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhc-CCCceEEEEeCCC
Q 021783            3 AL-AAVTHLL--GTGE--EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAI-GPWTKLVWVESPT   70 (307)
Q Consensus         3 al-~~~~~~~--~~gd--~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l-~~~~~~v~~~~~~   70 (307)
                      |+ .++.+++  ++||  +|+++.|+|.++.    ..++..|++++.++.+      |++++++++ ++++++|++++|+
T Consensus       117 al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~  192 (437)
T 3g0t_A          117 GCFVSFLVANRTHKNREYGTLFIDPGFNLNK----LQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPN  192 (437)
T ss_dssp             HHHHHHHHHTTSCTTCSCCEEEEESCCHHHH----HHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSC
T ss_pred             HHHHHHHHHhcCCCCCccEEEEeCCCcHhHH----HHHHHcCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCC
Confidence            45 3445567  9999  9999999998887    5566789999999874      789999999 6889999999999


Q ss_pred             CCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCc-------------CCcc-CCCccEEEeccccccccCCCceeEE
Q 021783           71 NPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL-------------SRPL-ELGADIVMHSATKFIAGHSDVMAGV  133 (307)
Q Consensus        71 n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~-------------~~~~-~~~~d~~~~s~~K~~~g~~g~~~G~  133 (307)
                      ||||.+++   +++|+++|++||+++|+|++|+....             .... ..+.+++++|+||++ +++|+++|+
T Consensus       193 nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~  271 (437)
T 3g0t_A          193 NPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAF-SYAGQRIGV  271 (437)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTT-SCGGGCCEE
T ss_pred             CCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCC-CCccceeEE
Confidence            99999986   77889999999999999999974322             1111 257889999999999 667899999


Q ss_pred             EEEcChhHHHH-----------------HHHHHHhcCCCCChhhHHHHhhcccc-------HHHHHHHHHHHHHHHHHHH
Q 021783          134 LAVKGERLAKE-----------------LYFLQNAEGSGLAPFDCWICLRGVKT-------MALRVEKQQDNAQKIAEFL  189 (307)
Q Consensus       134 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~l~~~l  189 (307)
                      ++++++...+.                 +...........+...+..+...++.       +....+.+.++.+.+.+.|
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L  351 (437)
T 3g0t_A          272 LMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMF  351 (437)
T ss_dssp             EEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99985533303                 33333333344455555555444432       4555666777777888888


Q ss_pred             hcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcH
Q 021783          190 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV  269 (307)
Q Consensus       190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~  269 (307)
                      ++. ++ .+..+.  +       ...+...+.++++.+++. +...+.+.|..+||.+++|..+..              
T Consensus       352 ~~~-g~-~~~~~~--~-------~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~~gi~v~~~~~~~~--------------  405 (437)
T 3g0t_A          352 LDN-GF-NIVYDK--D-------GNEPLADGFYFTVGYKGM-DSSKLIEKFVRYGMCAITLKTTGS--------------  405 (437)
T ss_dssp             HTT-TE-EESSCE--E-------TTEECCSSSEEEEEETTC-CHHHHHHHHHHTTEECEESTTTTC--------------
T ss_pred             HHc-CC-EEeccc--c-------CCCCCceeEEEEEecCCC-CHHHHHHHHHHcCeEEeeccccCC--------------
Confidence            765 22 111000  0       000112466778888743 377888888888999987765321              


Q ss_pred             HHHHhcCCCCCeEEEEecc---CChHHHHHHHHHHHhc
Q 021783          270 EVRQARGLTEDLVRISVGI---EDVNDLISDLDKALRT  304 (307)
Q Consensus       270 ~~~~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~  304 (307)
                             ..++++|||++.   +++++.++.|.+++++
T Consensus       406 -------~~~~~iRis~~~~~~e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          406 -------KRNEAMRICTSLLPESQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             -------CCTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred             -------CCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence                   013679999985   6788888888877653

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.95  E-value=1.6e-26  Score=204.41  Aligned_cols=262  Identities=15%  Similarity=0.102  Sum_probs=182.3

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----------------ChHHHHhhcCCCceEE
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----------------DLDEVASAIGPWTKLV   64 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----------------d~~~l~~~l~~~~~~v   64 (307)
                      |+ .++..++++||+|+++.|+|.++.    ..++..|++++.++.+                 |++++++.+++++++|
T Consensus       103 a~~~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~~~~v  178 (422)
T 3fvs_A          103 ALFTAFQALVDEGDEVIIIEPFFDCYE----PMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKAL  178 (422)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTTEEEE
T ss_pred             HHHHHHHHHcCCCCEEEEcCCCchhhH----HHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCCCceEE
Confidence            44 455567899999999999999887    5566789999888763                 7899999999899999


Q ss_pred             EEeCCCCCccccc---cHHHHHHHHHHcCCEEEEeCccCCCCcC-----Cc----cCCCccEEEeccccccccCCCceeE
Q 021783           65 WVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS-----RP----LELGADIVMHSATKFIAGHSDVMAG  132 (307)
Q Consensus        65 ~~~~~~n~tG~~~---~~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~----~~~~~d~~~~s~~K~~~g~~g~~~G  132 (307)
                      ++++|+||||.++   ++++|.++|++||+++|+|++|+.....     ..    ...+.+++++|+||.+ |.+|+|+|
T Consensus       179 ~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G  257 (422)
T 3fvs_A          179 VLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTF-SATGWKVG  257 (422)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHH-TCGGGCCE
T ss_pred             EECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhcc-CCccceEE
Confidence            9999999999999   5999999999999999999999742211     11    1236779999999999 67789999


Q ss_pred             EEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccc-----------cHHHHHHHHHHHHHHHHHHHhcCCCccEEecC
Q 021783          133 VLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK-----------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  201 (307)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  201 (307)
                      +++++++ +.+.+...........+...+..+...++           .+....+.+.++.+.+.+.|++. ++ .+..+
T Consensus       258 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~  334 (422)
T 3fvs_A          258 WVLGPDH-IMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GL-KPIIP  334 (422)
T ss_dssp             EEECCHH-HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TC-EEEBC
T ss_pred             EEEeCHH-HHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc-CC-eecCC
Confidence            9998755 44445544444444445544444444332           23445566667777777777765 22 11111


Q ss_pred             CCCCCCchHHHhhhccCCCceEEEEeCCHHH-------------HHHHHhc-CCcceeecCCCCccceeecccccCCCCC
Q 021783          202 GLPEHPGHELHYSQAKGAGSVLSFLTGSLAL-------------SKHVVET-TKYFSITVSFGSVKSLISMPCFMSHASI  267 (307)
Q Consensus       202 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~-l~~~gi~v~~g~~~~~~~~p~~~~~~~~  267 (307)
                                      ..+.++++.+.....             ..++.+. ++++||.+.+|+.|...  +        
T Consensus       335 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~--~--------  388 (422)
T 3fvs_A          335 ----------------QGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSV--P--------  388 (422)
T ss_dssp             ----------------SBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCH--H--------
T ss_pred             ----------------CeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCC--c--------
Confidence                            134566666532110             3345554 45579999888764311  0        


Q ss_pred             cHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 021783          268 PVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  304 (307)
Q Consensus       268 ~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  304 (307)
                            .....++++|||++.  +++++.++.|.+++++
T Consensus       389 ------~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~  421 (422)
T 3fvs_A          389 ------HQKHFDHYIRFCFVKDEATLQAMDEKLRKWKVE  421 (422)
T ss_dssp             ------HHTTSCSEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_pred             ------CCCCCCCeEEEEecCCHHHHHHHHHHHHHHHhh
Confidence                  011246889999986  6778888888888765

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.95  E-value=1.8e-26  Score=204.47  Aligned_cols=254  Identities=15%  Similarity=0.195  Sum_probs=182.1

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCC----CceEEEEeCCCCCccccccHH
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP----WTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~----~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      .++.+++++||+|+++.+.|+++.    ..++..|++++.++..|++++++.+++    ++++|++++++||+|.+.|++
T Consensus       139 ~al~~l~~~gd~vl~~~~~h~~~~----~~~~~~g~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~  214 (427)
T 2w8t_A          139 GIISTLAGKGEYVILDADSHASIY----DGCQQGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLK  214 (427)
T ss_dssp             HHHHHHSCTTCEEEEETTCCHHHH----HHHHHSCSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECCHH
T ss_pred             HHHHHhcCCCCEEEECCcccHHHH----HHHHHcCCeeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHH
Confidence            455667899999999999998887    445677999999999999999999864    789999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCcCC---------ccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH-HH
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-QN  150 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~~~---------~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~-~~  150 (307)
                      +|.++|++||+++|+|++|+.+....         ....++|++++|+||++ |++   +|+++++++... .+... ..
T Consensus       215 ~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~-g~~---gG~v~~~~~l~~-~l~~~~~~  289 (427)
T 2w8t_A          215 EMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSV-GTV---GGFVVSNHPKFE-AVRLACRP  289 (427)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTT-CSC---CEEEEECCTTGG-GGGGTCHH
T ss_pred             HHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhh-ccC---CCEEEeCHHHHH-HHHHhccc
Confidence            99999999999999999998765431         11235799999999999 455   599999865433 22221 11


Q ss_pred             -hcCCCCChhhHHHHhhccccH---HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEE
Q 021783          151 -AEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  226 (307)
Q Consensus       151 -~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  226 (307)
                       ......++.....+..+++.+   ....++..++.+.+.+.|++. ++ .+..+               ...++++++.
T Consensus       290 ~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~---------------~~~~~~~~~~  352 (427)
T 2w8t_A          290 YIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GF-RLGTE---------------TCDSAIVAVM  352 (427)
T ss_dssp             HHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH-TC-EESCS---------------SCCSSEEEEE
T ss_pred             ccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CC-cccCC---------------CCCCCEEEEE
Confidence             123344444444444444333   455666777777777777654 11 11000               1136788898


Q ss_pred             eCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHH
Q 021783          227 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKAL  302 (307)
Q Consensus       227 ~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l  302 (307)
                      +++......+.+.|..+||.++.|..+..                    ....+++|++++.    ++++++++.|.+++
T Consensus       353 ~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~--------------------~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l  412 (427)
T 2w8t_A          353 LEDQEQAAMMWQALLDGGLYVNMARPPAT--------------------PAGTFLLRCSICAEHTPAQIQTVLGMFQAAG  412 (427)
T ss_dssp             ESSHHHHHHHHHHHHHTTEECEEECTTTS--------------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred             ECCHHHHHHHHHHHHHCCeEEeeeCCCCC--------------------CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            87765678888888888998887654221                    0124679999985    56777777777766


Q ss_pred             hc
Q 021783          303 RT  304 (307)
Q Consensus       303 ~~  304 (307)
                      ++
T Consensus       413 ~~  414 (427)
T 2w8t_A          413 RA  414 (427)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.95  E-value=8.3e-27  Score=205.22  Aligned_cols=258  Identities=19%  Similarity=0.112  Sum_probs=177.0

Q ss_pred             cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHH
Q 021783           11 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE   84 (307)
Q Consensus        11 ~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~   84 (307)
                      +++||+|++++++|+++...+...++..|++++.++.+      |++++++.+++++++|++++++||||.+.|+++|.+
T Consensus       110 ~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~  189 (406)
T 3cai_A          110 AGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTK  189 (406)
T ss_dssp             GBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCCCHHHHH
T ss_pred             cCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCCCceEEEEeCCcCCccccCCHHHHHH
Confidence            68999999999999988766665555579999999875      899999999989999999999999999999999999


Q ss_pred             HHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeE-EEEEcChhHHHHHHHHH---------HhcC
Q 021783           85 MAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAG-VLAVKGERLAKELYFLQ---------NAEG  153 (307)
Q Consensus        85 ~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G-~~~~~~~~~~~~~~~~~---------~~~~  153 (307)
                      +|+++|+++|+|++|+.+..+ +...++.|++++|+||++ |+ +  +| +++++++ +.+.+....         ....
T Consensus       190 l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~-g~-~--~G~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~  264 (406)
T 3cai_A          190 LVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWG-GP-P--IGAMVFRDPS-VMNSFGSVSTNPYATGPARLEI  264 (406)
T ss_dssp             HHHHTTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGGT-SC-S--CEEEEESCHH-HHHTSCCCCSCTTCCGGGGGCC
T ss_pred             HHHHcCCEEEEEcccccCCCCCCchhcCCCEEEeehhhhc-CC-C--cCeEEEEehH-HHhhcCCcccCCCCCccccccC
Confidence            999999999999999987654 445568999999999988 54 3  67 9988754 333222111         0111


Q ss_pred             CCCChhhHHHHhhcccc-------------------HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhh
Q 021783          154 SGLAPFDCWICLRGVKT-------------------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS  214 (307)
Q Consensus       154 ~~~~~~~~~~~~~~l~~-------------------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~  214 (307)
                      .+.+.........+++.                   ++...++..++.+.+.+.|++.+++ .+..+             
T Consensus       265 ~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~-------------  330 (406)
T 3cai_A          265 GVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLV-MLIGR-------------  330 (406)
T ss_dssp             SCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTE-EECCC-------------
T ss_pred             CCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCe-EEcCC-------------
Confidence            22222222222222221                   3334445556666677777655432 11111             


Q ss_pred             hccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCC--CCCeEEEEeccCChH
Q 021783          215 QAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL--TEDLVRISVGIEDVN  292 (307)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~iRis~~~~~~~  292 (307)
                      . ...+++++|.+++.+ ..++.+.|..+||.++.|.....                ....|.  .++++|+|++....+
T Consensus       331 ~-~~~~~~~~~~~~~~~-~~~~~~~L~~~gi~v~~g~~~~~----------------~~~~g~~~~~~~iRis~~~~~t~  392 (406)
T 3cai_A          331 P-EAQIPVVSFAVHKVP-ADRVVQRLADNGILAIANTGSRV----------------LDVLGVNDVGGAVTVGLAHYSTM  392 (406)
T ss_dssp             C-SSBCSEEEEEETTBC-HHHHHHHHHHTTEECEECCSCHH----------------HHHHTTTTTTCCEEEECCTTCCH
T ss_pred             c-cccCCEEEEEECCcC-HHHHHHHHHHCCcEEecCChHHH----------------HHHcCCCCCCCeEEEEeecCCCH
Confidence            0 113457888886533 66777778778998887762110                111222  247899999987777


Q ss_pred             HHHHHHHHHHhcC
Q 021783          293 DLISDLDKALRTG  305 (307)
Q Consensus       293 ~~i~~l~~~l~~~  305 (307)
                      +.++.+.+.|+++
T Consensus       393 e~i~~~~~~l~~~  405 (406)
T 3cai_A          393 AEVDQLVRALASL  405 (406)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHh
Confidence            7777777777654

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.95  E-value=2e-26  Score=202.32  Aligned_cols=228  Identities=17%  Similarity=0.153  Sum_probs=180.2

Q ss_pred             HH-HHHHHhcCCCCeEEEcC-CCCcchHHHH-------hhhcccCCcEEEEecC-----CChHHHHhhcC--CCceEEEE
Q 021783            3 AL-AAVTHLLGTGEEIVAGD-DLYGGTDRLL-------SRVTPKTGVVVKRVNT-----CDLDEVASAIG--PWTKLVWV   66 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~-~~~~~~~~~~-------~~~~~~~g~~~~~v~~-----~d~~~l~~~l~--~~~~~v~~   66 (307)
                      |+ .++.++++|||+|++++ +.|.++...+       ...++..|++++.+|.     .|+++++++++  ++|++|++
T Consensus       103 Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i  182 (427)
T 3i16_A          103 ALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHI  182 (427)
T ss_dssp             HHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEE
T ss_pred             HHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEE
Confidence            45 56667899999999999 9998887555       1456778999999998     58999999998  89999999


Q ss_pred             eC----CCCCccccccHHHHHHHHHH--cCCEEEEeCccCCCC-cCCccCCCccEEEeccccccccCCCceeEEEEEcCh
Q 021783           67 ES----PTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        67 ~~----~~n~tG~~~~~~~l~~~~~~--~~~~li~D~a~~~~~-~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      ++    |+||+|.+.|+++|.++|++  +|+++++|++|+.+. ...+...++|++++|+||+++|+...++|+++++++
T Consensus       183 ~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~  262 (427)
T 3i16_A          183 QRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKD  262 (427)
T ss_dssp             ECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHH
T ss_pred             EcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHH
Confidence            99    99999999999999999999  999999999999887 446777899999999999996643356899999855


Q ss_pred             hHHHHHHHHH--HhcCCCCCh-hh-HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhh
Q 021783          140 RLAKELYFLQ--NAEGSGLAP-FD-CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ  215 (307)
Q Consensus       140 ~~~~~~~~~~--~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  215 (307)
                       +.+.+....  ...+....+ .. ++++..+++.+..+.++..+++..+.++|+.++.  .+ +++ .+.|.       
T Consensus       263 -li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~~~~~r~~~~~~~a~~la~~L~~~g~--~V-~p~-~~~~~-------  330 (427)
T 3i16_A          263 -CIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFLAPHISMEALKGAILCSRIMELAGF--EV-MPK-YDEKR-------  330 (427)
T ss_dssp             -HHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EE-ESC-TTSCC-------
T ss_pred             -HHHHHHHhcccCccCccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ee-cCC-CCCCC-------
Confidence             444444422  222222222 33 7888889998899999999999999999998864  33 554 33322       


Q ss_pred             ccCCCceEEEEeCCHHHHHHHHhcCCccee
Q 021783          216 AKGAGSVLSFLTGSLALSKHVVETTKYFSI  245 (307)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi  245 (307)
                         ..-++.|.+++.+.+..+.+.|+....
T Consensus       331 ---~~~i~~i~l~~~~~~~~f~~~l~~~~~  357 (427)
T 3i16_A          331 ---SDIIQSIKFNDKDKLIEFCKGIQTGSP  357 (427)
T ss_dssp             ---SSSCEEEECSSHHHHHHHHHHHHHTCS
T ss_pred             ---ccEEEEEEECCHHHHHHHHHHHhhcCc
Confidence               233888999888888999999887644

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.95  E-value=3.2e-27  Score=206.03  Aligned_cols=272  Identities=18%  Similarity=0.146  Sum_probs=179.5

Q ss_pred             HHHHHhc----CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccc
Q 021783            5 AAVTHLL----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         5 ~~~~~~~----~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~   75 (307)
                      .++.++.    ++||+|++++++|+++...+.. ++..|++++.++.+     |++++++.+++++++|++++++||||.
T Consensus        75 ~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~  153 (382)
T 4eb5_A           75 LAIIGYAMRNARKGKHILVSAVEHMSVINPAKF-LQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGT  153 (382)
T ss_dssp             HHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHH-HTTTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCB
T ss_pred             HHHHHHHhhccCCCCEEEECCCcchHHHHHHHH-HHhCCcEEEEeccCCCCccCHHHHHHHhcCCCeEEEEeccCCCccc
Confidence            3444555    8999999999999888755542 34579999999873     899999999988999999999999999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChh-HHHHHHH---HHH
Q 021783           76 ICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-LAKELYF---LQN  150 (307)
Q Consensus        76 ~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~-~~~~~~~---~~~  150 (307)
                      +.|+++|.++|++||++ |+|++|+.+..+ +...++.|++++|+||++ |++|  .|+++++++. +......   ...
T Consensus       154 ~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~-g~~g--~G~~~~~~~~~l~~~~~~~~~~~~  229 (382)
T 4eb5_A          154 IQPVEEISEVLAGKAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIY-GPKG--VGALWIRKEAKLQPVILGGGQENG  229 (382)
T ss_dssp             BCCHHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGT-CCSS--CEEEEEETTCCCCCSSCSSCTGGG
T ss_pred             cCCHHHHHHHHHHCCCE-EEEcchhcCCcccCccccCCCEEEeehHHhc-CCCc--eEEEEEccccccCceecCCCcccc
Confidence            99999999999999999 999999976544 334457899999999986 6777  7888888663 2111000   001


Q ss_pred             hcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEE
Q 021783          151 AEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  226 (307)
Q Consensus       151 ~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  226 (307)
                      ....+.+.........+++.    +....++..++.+.+.+.|++.+++ .+..+             .....+++++|.
T Consensus       230 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~-------------~~~~~~~~~~~~  295 (382)
T 4eb5_A          230 LRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEES-YLNGH-------------PEKRLPNNVNVR  295 (382)
T ss_dssp             TSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTE-EECSC-------------SSSBCTTEEEEE
T ss_pred             ccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCe-EEeCC-------------cccCCCCEEEEE
Confidence            11122222233333333332    2333444555666666666654332 11110             001125678888


Q ss_pred             eCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCC----CCeEEEEecc----CChHHHHHHH
Q 021783          227 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRISVGI----EDVNDLISDL  298 (307)
Q Consensus       227 ~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~iRis~~~----~~~~~~i~~l  298 (307)
                      +++.+ ...+.+.|..+||.++.|..+....        ..+..+....|.+    ++++||+++.    ++++++++.|
T Consensus       296 ~~~~~-~~~~~~~l~~~gi~v~~g~~~~~~~--------~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l  366 (382)
T 4eb5_A          296 FSYIE-GESIVLSLDMAGIQASTGSACSSKT--------LQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVL  366 (382)
T ss_dssp             ETTSC-HHHHHHHHHHHTCBCBCCCGGGTSS--------CCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHH
T ss_pred             eCCcC-HHHHHHHHHHCCEEEeccccccCCC--------CcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHH
Confidence            86433 6678888878899999887643210        0122233344443    6789999984    5677777777


Q ss_pred             HHHHhc
Q 021783          299 DKALRT  304 (307)
Q Consensus       299 ~~~l~~  304 (307)
                      .+++++
T Consensus       367 ~~~~~~  372 (382)
T 4eb5_A          367 PGVIER  372 (382)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776643

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.95  E-value=9e-28  Score=208.79  Aligned_cols=260  Identities=16%  Similarity=0.160  Sum_probs=179.2

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEec--CC-----ChHHHHhhcC-----CCceEEEEeCC
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN--TC-----DLDEVASAIG-----PWTKLVWVESP   69 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~--~~-----d~~~l~~~l~-----~~~~~v~~~~~   69 (307)
                      |+ .++.+++++||+|++++|+|+++.    ..++..|++++.++  .+     |++++++.++     +++++|+++++
T Consensus        81 a~~~~~~~~~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~  156 (371)
T 2e7j_A           81 AKFAVMHSLAKKDAWVVMDENCHYSSY----VAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYP  156 (371)
T ss_dssp             HHHHHHHHHCCTTCEEEEETTCCHHHH----HHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESS
T ss_pred             HHHHHHHHHhCCCCEEEEccCcchHHH----HHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECC
Confidence            44 455567899999999999999888    44677899999999  65     8999999997     78999999999


Q ss_pred             CCCccccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH
Q 021783           70 TNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  148 (307)
Q Consensus        70 ~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~  148 (307)
                      +||||.+.|+++|.++|++||+++|+|++|+.+..+ +...++.|++++|+||+++++.  ++|+++++++.....+...
T Consensus       157 ~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~--~~G~~~~~~~~~~~~~~~~  234 (371)
T 2e7j_A          157 DGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASG--PIGVMGMKEEWAEIVLRRS  234 (371)
T ss_dssp             CTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCS--SCEEEEECTTTTTTTTCBC
T ss_pred             CCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcCCCEEEecCCcCCCCCC--CcEEEEEechhhhhhcccc
Confidence            999999999999999999999999999999987764 5555678999999999986654  4899999876433202211


Q ss_pred             HH--hc-----CCCCChhhHHHHhhccccHH-HHHHHH--HHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          149 QN--AE-----GSGLAPFDCWICLRGVKTMA-LRVEKQ--QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       149 ~~--~~-----~~~~~~~~~~~~~~~l~~~~-~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      ..  ..     ....+....+.+..+++.+. ...+..  .++.+.+.+.|++. ++ .+..+.              ..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~-~~~~~~--------------~~  298 (371)
T 2e7j_A          235 EKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKL-GI-KQLGDN--------------PH  298 (371)
T ss_dssp             SSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHT-TC-EEESSS--------------SC
T ss_pred             ccCcccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-Cc-EEecCC--------------Cc
Confidence            11  01     22233333333334444333 223444  56666777777654 22 111110              11


Q ss_pred             CCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEE-EEecc-----CChH
Q 021783          219 AGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVR-ISVGI-----EDVN  292 (307)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iR-is~~~-----~~~~  292 (307)
                      .++++++.++   ....+.+.|..+||.+.+ ..+...                 ..|..++++| ++++.     ++++
T Consensus       299 ~~~~~~~~~~---~~~~~~~~l~~~gi~~~~-~~~~~~-----------------~~g~~~~~iRii~~~~~~~~~~~i~  357 (371)
T 2e7j_A          299 NHDLMFFHAE---VLYEISKKAKGGRFFLYR-ELKSRK-----------------IHGIKPGLTRYFKLSTYGLSDEEVD  357 (371)
T ss_dssp             CSSEEEEECH---HHHHHHHHSSSGGGHHHH-HHHHTT-----------------EECSCTTCCSEEEEECTTCCHHHHH
T ss_pred             cCceEEEECC---CHHHHHHHHHHCCEEEEe-cccccc-----------------ccCCCCCceEEEEeeccCCCHHHHH
Confidence            3568888876   477888889888997754 211000                 0022367799 99984     4667


Q ss_pred             HHHHHHHHHHhcC
Q 021783          293 DLISDLDKALRTG  305 (307)
Q Consensus       293 ~~i~~l~~~l~~~  305 (307)
                      ++++.|.++++++
T Consensus       358 ~~~~~l~~~~~~~  370 (371)
T 2e7j_A          358 YVLNAFKEIIEKY  370 (371)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhc
Confidence            7777777776654

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.95  E-value=1.3e-27  Score=208.68  Aligned_cols=273  Identities=15%  Similarity=0.094  Sum_probs=179.6

Q ss_pred             HHHHHhc----CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccc
Q 021783            5 AAVTHLL----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         5 ~~~~~~~----~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~   75 (307)
                      .++.++.    ++||+|++++++|+++...+. .++..|++++.+|.+     |++++++.+++++++|++++++||||.
T Consensus        76 ~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~  154 (384)
T 1eg5_A           76 WILKTVAETFEKRKRTIITTPIEHKAVLETMK-YLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGT  154 (384)
T ss_dssp             HHHHHHHHHTTTTCCEEEECTTSCHHHHHHHH-HHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCB
T ss_pred             HHHHhhhhhccCCCCEEEECCCCchHHHHHHH-HHHhcCCEEEEEccCCCCccCHHHHHHHhCCCCeEEEEECCCCCccc
Confidence            3444555    799999999999988765443 235679999999873     889999999989999999999999999


Q ss_pred             cccHHHHHHHHHHcC--CEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChh-HHHHHHHH---
Q 021783           76 ICDIRKIAEMAHAHG--ALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-LAKELYFL---  148 (307)
Q Consensus        76 ~~~~~~l~~~~~~~~--~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~-~~~~~~~~---  148 (307)
                      +.|+++|.++|++||  +++|+|++|+.+..+ +...++.|++++|+||++ |++|  +|+++++++. +...+...   
T Consensus       155 ~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~-g~~G--~G~~~~~~~~~~~~~~~~~~~~  231 (384)
T 1eg5_A          155 IQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFH-GPKG--VGITYIRKGVPIRPLIHGGGQE  231 (384)
T ss_dssp             BCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGT-SCTT--CEEEEECTTSCCCCSBCSSCTT
T ss_pred             ccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhc-CCCc--eEEEEEcCCCccccccccCccc
Confidence            999999999999999  999999999866544 444557999999999987 6777  7999998763 11111100   


Q ss_pred             HHhcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEE
Q 021783          149 QNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  224 (307)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  224 (307)
                      ......+.+...+..+..+++.    +....+...++.+.+.+.|++ .++ .+..+             .....+.+++
T Consensus       232 ~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~-~~~~~-------------~~~~~~~~~~  296 (384)
T 1eg5_A          232 RGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN-LGA-HIITP-------------LEISLPNTLS  296 (384)
T ss_dssp             TTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT-TTC-EECSC-------------TTSBCTTEEE
T ss_pred             ccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC-CCe-EEeCC-------------cccCCCCEEE
Confidence            0011223333344433344432    334455556666677777765 222 11111             0011245777


Q ss_pred             EEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCC----CCeEEEEecc----CChHHHHH
Q 021783          225 FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRISVGI----EDVNDLIS  296 (307)
Q Consensus       225 ~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~iRis~~~----~~~~~~i~  296 (307)
                      |.+.+.+ ...+.+.|..+||.++.|..+....   .     .+.......|.+    ++++||+++.    ++++++++
T Consensus       297 ~~~~~~~-~~~~~~~l~~~gi~v~~g~~~~~~~---~-----~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~  367 (384)
T 1eg5_A          297 VSFPNIR-GSTLQNLLSGYGIYVSTSSACTSKD---E-----RLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLK  367 (384)
T ss_dssp             EECTTCC-HHHHHHHHHHTTEECBC--------------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHH
T ss_pred             EEeCCCC-HHHHHHHHhhCCeEEeccccccCCC---C-----cchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHH
Confidence            7776433 6678888888999999887542110   0     011122233432    4789999983    68888888


Q ss_pred             HHHHHHhcC
Q 021783          297 DLDKALRTG  305 (307)
Q Consensus       297 ~l~~~l~~~  305 (307)
                      .|.++++++
T Consensus       368 ~l~~~~~~~  376 (384)
T 1eg5_A          368 KIEEILSFL  376 (384)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            888887654

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.95  E-value=2.3e-26  Score=202.64  Aligned_cols=259  Identities=17%  Similarity=0.171  Sum_probs=179.0

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCC------hHHHHhhcCCCceEEEEeCCCCCccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD------LDEVASAIGPWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d------~~~l~~~l~~~~~~v~~~~~~n~tG~   75 (307)
                      |+ .++.+++++||+|++++|+|+++.    ..++..|++++.++.++      ++++++.+++++++|++++|+||||.
T Consensus       114 a~~~~~~~~~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~l~~~~~~v~~~~p~nptG~  189 (409)
T 2gb3_A          114 AILFSFAVIANPGDEILVLEPFYANYN----AFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGV  189 (409)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTHHH----HHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSCTTTCC
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCchhHH----HHHHHcCCEEEEeccCCCCCCccHHHHHHhhCcCCeEEEECCCCCCCCC
Confidence            44 455567899999999999998887    45667899999998752      78899988888999999999999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCccCCCCcC----C-ccC-CCccEEEeccccccccCCCceeEEEEEcChhHHHHHH
Q 021783           76 ICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----R-PLE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  146 (307)
Q Consensus        76 ~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~----~-~~~-~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~  146 (307)
                      +++   +++|.++|++||+++|+|++|+.+...    . ... .+.|++++|+||++ |++|+++|+++++++.+.+.+.
T Consensus       190 ~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~l~~~l~  268 (409)
T 2gb3_A          190 VYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKF-SACGARVGCLITRNEELISHAM  268 (409)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTT-TCGGGCCEEEECSCHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhcc-CCccceEEEEEECcHHHHHHHH
Confidence            974   899999999999999999999865431    1 112 36799999999999 6678899999999734555555


Q ss_pred             HHHHhcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCC-CCchHHHhhhccCCCc
Q 021783          147 FLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE-HPGHELHYSQAKGAGS  221 (307)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~  221 (307)
                      ....... ..+...+..+...++.    ++...+...++.+.+.+.|++. ++        .- .        . ...+.
T Consensus       269 ~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~--------~~~~--------~-~~~~~  329 (409)
T 2gb3_A          269 KLAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH-GL--------KRFT--------K-PSGAF  329 (409)
T ss_dssp             HHHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT-TC--------CCBC--------C-CSBSS
T ss_pred             HHHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc-Cc--------eeee--------C-CCeeE
Confidence            4444333 4455555555555532    3333444555666666666653 11        10 0        0 11244


Q ss_pred             eEEEEeCCHHHHHHHHhcCCcc------eeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHH
Q 021783          222 VLSFLTGSLALSKHVVETTKYF------SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVND  293 (307)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~l~~~------gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~  293 (307)
                      ++++.+++. +..++.+.|..+      ||.++.|..|...                  .+..++++|++++.  +++++
T Consensus       330 ~~~~~~~~~-~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~------------------~~~~~~~iRis~~~~~e~i~~  390 (409)
T 2gb3_A          330 YITAELPVE-DAEEFARWMLTDFNMDGETTMVAPLRGFYLT------------------PGLGKKEIRIACVLEKDLLSR  390 (409)
T ss_dssp             EEEEECSSS-CHHHHHHHHHHSCCBTTEEEECEEGGGGCSS------------------TTTTSSEEEEECCSCHHHHHH
T ss_pred             EEEEEeCCC-CHHHHHHHHHhccccccCcEEEeCchHhCCC------------------CCCCCCEEEEEeCCCHHHHHH
Confidence            555566532 356677777655      9988877653210                  01236789999984  56777


Q ss_pred             HHHHHHHHHhc
Q 021783          294 LISDLDKALRT  304 (307)
Q Consensus       294 ~i~~l~~~l~~  304 (307)
                      .++.|.+++++
T Consensus       391 ~~~~l~~~l~~  401 (409)
T 2gb3_A          391 AIDVLMEGLKM  401 (409)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            78888777654

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.95  E-value=2.5e-26  Score=200.68  Aligned_cols=252  Identities=12%  Similarity=0.142  Sum_probs=176.6

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCC---CceEEEEeCCCCCccccccHHH
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP---WTKLVWVESPTNPRQQICDIRK   81 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~---~~~~v~~~~~~n~tG~~~~~~~   81 (307)
                      .++.+++++||+|++++|.|+++.    ..++..|++++.+|..|++++++.+++   +++++++++++||||.+.|+++
T Consensus       114 ~~~~~~~~~gd~v~~~~~~~~~~~----~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~  189 (384)
T 1bs0_A          114 AVIAAMMAKEDRIAADRLSHASLL----EAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAE  189 (384)
T ss_dssp             HHHHHHCCTTCEEEEETTCCHHHH----HHHHTSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHH
T ss_pred             HHHHHhCCCCcEEEEcccccHHHH----HHHHHcCCCEEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccCHHH
Confidence            455667899999999999998877    455668999999999999999998864   3789999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCccCCCCcC----C---ccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH-HHhc-
Q 021783           82 IAEMAHAHGALLLVDNSIMSPVLS----R---PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-QNAE-  152 (307)
Q Consensus        82 l~~~~~~~~~~li~D~a~~~~~~~----~---~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~-~~~~-  152 (307)
                      |.++|++||+++|+|++|+.+...    .   ....+.|++++|+||++ +++   +|+++++++ +.+.+... .... 
T Consensus       190 i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~-~~~---GG~~~~~~~-~~~~l~~~~~~~~~  264 (384)
T 1bs0_A          190 IQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGF-GVS---GAAVLCSST-VADYLLQFARHLIY  264 (384)
T ss_dssp             HHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTT-SSC---CEEEEECHH-HHHHHHHHCHHHHS
T ss_pred             HHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchh-hcc---CcEEEeCHH-HHHHHHHhchhhhc
Confidence            999999999999999999876531    1   11135799999999999 465   499998744 44444432 1222 


Q ss_pred             CCCCChhhHHHHhhccccHH-----HHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEe
Q 021783          153 GSGLAPFDCWICLRGVKTMA-----LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  227 (307)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  227 (307)
                      +...+...+..+..+++.+.     ...+...++.+.+.+.|++.. + .+ .                .+.++++++.+
T Consensus       265 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-~~-~----------------~~~~~~~~~~~  325 (384)
T 1bs0_A          265 STSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLP-F-TL-A----------------DSCSAIQPLIV  325 (384)
T ss_dssp             SBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSS-C-EE-C----------------SCCSSBCCEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcC-C-cc-c----------------CCCCCEEEEEe
Confidence            22345555555444444332     344555666666777776541 1 11 0                11356777777


Q ss_pred             CCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 021783          228 GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  304 (307)
Q Consensus       228 ~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  304 (307)
                      ++.....++.+.|..+||.++.|..+..                    ...++++|++++....++.++.+.+.|++
T Consensus       326 ~~~~~~~~l~~~l~~~gi~v~~~~~~~~--------------------~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~  382 (384)
T 1bs0_A          326 GDNSRALQLAEKLRQQGCWVTAIRPPTV--------------------PAGTARLRLTLTAAHEMQDIDRLLEVLHG  382 (384)
T ss_dssp             ESHHHHHHHHHHHHHTTEECCEECTTSS--------------------CTTCEEECCBCCTTCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCcEEEeecCCCC--------------------CCCCceEEEEEcCCCCHHHHHHHHHHHHh
Confidence            6544577888888888998887654210                    11256799999976566666666666554

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.95  E-value=2.8e-26  Score=202.54  Aligned_cols=270  Identities=21%  Similarity=0.204  Sum_probs=185.6

Q ss_pred             HH-HHHHHh----cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-----CChHHHHhhcCCCceEEEEeCCCCC
Q 021783            3 AL-AAVTHL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGPWTKLVWVESPTNP   72 (307)
Q Consensus         3 al-~~~~~~----~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~~v~~~~~~n~   72 (307)
                      |+ .++.++    +++||+|++++++|++....+...++..|++++.++.     .|++++++++++++++|++++++||
T Consensus       102 a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~np  181 (420)
T 1t3i_A          102 AINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNT  181 (420)
T ss_dssp             HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCTTEEEEEEESBCTT
T ss_pred             HHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCCCceEEEEeCCccc
Confidence            44 455556    7899999999999999765555667778999999987     3899999999989999999999999


Q ss_pred             ccccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHh
Q 021783           73 RQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  151 (307)
Q Consensus        73 tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~  151 (307)
                      ||.+.|+++|.++|++||+++|+|++|+.+..+ +...++.|++++|+||.+ |++|  +|+++++++ +.+.+......
T Consensus       182 tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~-~~~g--~G~~~~~~~-~~~~~~~~~~~  257 (420)
T 1t3i_A          182 LGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMC-APTG--IGFLYGKEE-ILEAMPPFFGG  257 (420)
T ss_dssp             TCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTT-SCTT--CEEEEECHH-HHHHSCCCSCS
T ss_pred             ccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhcCCCEEEEehhhhc-CCCc--eEEEEEchH-HHhhcCceecC
Confidence            999999999999999999999999999988765 555568999999999977 6677  899999854 43333211110


Q ss_pred             --------------------cCCCCChhhHHHHhh-cccc-----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCC
Q 021783          152 --------------------EGSGLAPFDCWICLR-GVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE  205 (307)
Q Consensus       152 --------------------~~~~~~~~~~~~~~~-~l~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~  205 (307)
                                          .....+...+..+.. +++.     +....++..++.+.+.+.|++.+++ .+..+.   
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~~~---  333 (420)
T 1t3i_A          258 GEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQL-RLYGPN---  333 (420)
T ss_dssp             TTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTE-EEESCC---
T ss_pred             CCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCe-EEeCCC---
Confidence                                001122333333222 2322     2344555666777777777765433 111110   


Q ss_pred             CCchHHHhhhcc-CCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEE
Q 021783          206 HPGHELHYSQAK-GAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI  284 (307)
Q Consensus       206 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRi  284 (307)
                               ... ..+++++|.+++.+ ...+.+.+..+||.++.|..+..   |           .....|. ++++|+
T Consensus       334 ---------~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~v~~~~~~~~---~-----------~~~~~g~-~~~iRi  388 (420)
T 1t3i_A          334 ---------PKHGDRAALASFNVAGLH-ASDVATMVDQDGIAIRSGHHCTQ---P-----------LHRLFDA-SGSARA  388 (420)
T ss_dssp             ---------GGGSCBCSEEEEEETTBC-HHHHHHHHHTTTEECBCSCTTCH---H-----------HHHHTTC-CCCEEE
T ss_pred             ---------ccccccCCEEEEEECCCC-HHHHHHHHHHCCeEEeeccccch---H-----------HHHhcCC-CCeEEE
Confidence                     000 23678888886533 56777888888999988865321   1           0011221 567999


Q ss_pred             Eecc----CChHHHHHHHHHHHhcC
Q 021783          285 SVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       285 s~~~----~~~~~~i~~l~~~l~~~  305 (307)
                      |++.    ++++++++.|.++++.+
T Consensus       389 s~~~~~~~~~i~~~~~~l~~~~~~~  413 (420)
T 1t3i_A          389 SLYFYNTKEEIDLFLQSLQATIRFF  413 (420)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             ecCCCCCHHHHHHHHHHHHHHHHHh
Confidence            9985    46666777777666543

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.95  E-value=2.5e-26  Score=200.53  Aligned_cols=255  Identities=17%  Similarity=0.144  Sum_probs=176.3

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC--------ChHHHHhhcCCCceEEEEeCCCCCc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--------DLDEVASAIGPWTKLVWVESPTNPR   73 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--------d~~~l~~~l~~~~~~v~~~~~~n~t   73 (307)
                      |+ .++.+++++||+|++++|+|+++.    ..++..|++++.++.+        |++++++.+++++++|++++|+|||
T Consensus        90 a~~~~~~~~~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~npt  165 (381)
T 1v2d_A           90 ALYVLLQSLVGPGDEVVVLEPFFDVYL----PDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPT  165 (381)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTT
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCchhHH----HHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCCC
Confidence            44 445557899999999999999887    5567789999988864        7899999998889999999999999


Q ss_pred             ccccc---HHHHHHHHHHcCCEEEEeCccCCCCc----CCcc--CCCccEEEeccccccccCCCceeEEEEEcChhHHHH
Q 021783           74 QQICD---IRKIAEMAHAHGALLLVDNSIMSPVL----SRPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  144 (307)
Q Consensus        74 G~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~----~~~~--~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~  144 (307)
                      |.+++   +++|.++|++||+++|+|++|+....    ....  ..+.|++++|+||++ +++|+|+|+++++++ +.+.
T Consensus       166 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~-~~~G~r~G~~~~~~~-~~~~  243 (381)
T 1v2d_A          166 GLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRL-EATGYRVGWIVGPKE-FMPR  243 (381)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHT-TCGGGCCEEEECCTT-THHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhc-CCcccceEEEEeCHH-HHHH
Confidence            99986   89999999999999999999985432    1222  357899999999999 667889999999765 4444


Q ss_pred             HHHHHHhcCCCCChhhHHHHhhccc------cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          145 LYFLQNAEGSGLAPFDCWICLRGVK------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      +...........+...+..+...++      .++...+...++.+.+.+.|++. ++. +..                ..
T Consensus       244 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~----------------~~  305 (381)
T 1v2d_A          244 LAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLR-VYV----------------PE  305 (381)
T ss_dssp             HHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCC-EEC----------------CS
T ss_pred             HHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-CCE-ecC----------------CC
Confidence            4444433333344444444444433      23344555566666777777652 111 100                11


Q ss_pred             CCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHH
Q 021783          219 AGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLIS  296 (307)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~  296 (307)
                      .+.++++.+++.+    +.+.+.++||.++.|..+...                   ...++++|||++.  +++++.++
T Consensus       306 ~~~~~~~~~~~~~----~~~~l~~~gi~v~~g~~~~~~-------------------~~~~~~iRi~~~~~~~~i~~~~~  362 (381)
T 1v2d_A          306 GTYFLMAELPGWD----AFRLVEEARVALIPASAFYLE-------------------DPPKDLFRFAFCKTEEELHLALE  362 (381)
T ss_dssp             BSSEEEEECTTCC----HHHHHHHTCEECEEGGGGCSS-------------------SCCTTEEEEECCSCHHHHHHHHH
T ss_pred             cceEEEEecChHh----HHHHHHhCCEEEecchHhCCC-------------------CCCCCEEEEEeCCCHHHHHHHHH
Confidence            2456677775432    555566789988877653210                   0135789999986  56667777


Q ss_pred             HHHHHHhc
Q 021783          297 DLDKALRT  304 (307)
Q Consensus       297 ~l~~~l~~  304 (307)
                      .|.+++++
T Consensus       363 ~l~~~l~~  370 (381)
T 1v2d_A          363 RLGRVVNS  370 (381)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHHhh
Confidence            77777654

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.95  E-value=2.1e-27  Score=207.98  Aligned_cols=260  Identities=15%  Similarity=0.096  Sum_probs=176.7

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhc--CCCceEEEEeCCCCCccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAI--GPWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l--~~~~~~v~~~~~~n~tG~~~   77 (307)
                      .++.+++++||+|++++++|+++.  +...++..|++++.++.+     |++++++++  .+++++|++++++||||.+.
T Consensus        74 ~~~~~~~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~  151 (392)
T 2z9v_A           74 AAAASLISPDDVVLNLASGVYGKG--FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTIN  151 (392)
T ss_dssp             HHHHHHCCTTCCEEEEESSHHHHH--HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEEC
T ss_pred             HHHHHhcCCCCEEEEecCCcccHH--HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceec
Confidence            445556899999999999998763  334556678999988863     789999999  46899999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH-------
Q 021783           78 DIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-------  149 (307)
Q Consensus        78 ~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~-------  149 (307)
                      |+++|.++|++||+++|+|++|+.+..+ +...++.|++++|+||++++++|  .|+++++++.. +.+....       
T Consensus       152 ~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g--~G~l~~~~~~~-~~l~~~~~g~~~~~  228 (392)
T 2z9v_A          152 PIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPG--LTMMGVSERAW-AKMKANPLAPRASM  228 (392)
T ss_dssp             CHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSC--CEEEEECHHHH-HHHHTCTTSCCSST
T ss_pred             cHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecCcccccCCCc--eeEEEECHHHH-HHhhhccCCCCcee
Confidence            9999999999999999999999877654 44556799999999998878787  69999985533 3332110       


Q ss_pred             -------------HhcCCCCChhhHHHHhhcccc-----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHH
Q 021783          150 -------------NAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL  211 (307)
Q Consensus       150 -------------~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~  211 (307)
                                   .....+.+.........+++.     +....++..++.+.+.+.|++. ++. +..      |    
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~------~----  296 (392)
T 2z9v_A          229 LSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM-GLS-VWA------A----  296 (392)
T ss_dssp             TCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-BSS------S----
T ss_pred             ccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CCe-ecc------C----
Confidence                         001112222222222233332     2333445555666666666643 210 000      0    


Q ss_pred             HhhhccCCCceEEEEeCCHHHHHHHHhcCCcc-eeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEe-c--
Q 021783          212 HYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV-G--  287 (307)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~-~--  287 (307)
                        +.....++++++.++.......+.+.|..+ ||.++.|..+                       ..++++|+|+ +  
T Consensus       297 --~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~-----------------------~~~~~lRi~~~~~~  351 (392)
T 2z9v_A          297 --SDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGE-----------------------TLGKLTRIGHMGPT  351 (392)
T ss_dssp             --SGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGG-----------------------GTTTEEEEECCGGG
T ss_pred             --CccccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCCCC-----------------------CCCCeEEEeCcccc
Confidence              000113567788875322367788888776 9988876631                       0256799995 5  


Q ss_pred             --cCChHHHHHHHHHHHhcCC
Q 021783          288 --IEDVNDLISDLDKALRTGP  306 (307)
Q Consensus       288 --~~~~~~~i~~l~~~l~~~~  306 (307)
                        .++++++++.|.++++++.
T Consensus       352 ~~~~~i~~~~~~l~~~~~~~~  372 (392)
T 2z9v_A          352 AQPIYAIAALTALGGAMNAAG  372 (392)
T ss_dssp             CSHHHHHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHHHHcC
Confidence              2788888888888887653

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.95  E-value=2.2e-26  Score=201.01  Aligned_cols=260  Identities=12%  Similarity=0.112  Sum_probs=175.3

Q ss_pred             HH-HHHHHhc---CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-C-----ChHHHHhhcCC-CceEEEEeCCCC
Q 021783            3 AL-AAVTHLL---GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-C-----DLDEVASAIGP-WTKLVWVESPTN   71 (307)
Q Consensus         3 al-~~~~~~~---~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~-----d~~~l~~~l~~-~~~~v~~~~~~n   71 (307)
                      |+ .++.++.   ++||+|+++++.+.....  ...++..|++++.++. +     |++++++++++ ++++|++++++|
T Consensus        71 al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~--~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~n  148 (385)
T 2bkw_A           71 GWDIFASNFILSKAPNKNVLVVSTGTFSDRF--ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDT  148 (385)
T ss_dssp             HHHHHHHHHSCTTCSCCEEEEECSSHHHHHH--HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEET
T ss_pred             HHHHHHHHHhccCCCCCeEEEEcCCcchHHH--HHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCC
Confidence            45 4455566   899999887554333321  1445678999999987 3     88999999975 899999999999


Q ss_pred             CccccccHHHHHHHHHHc--CCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHH---
Q 021783           72 PRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL---  145 (307)
Q Consensus        72 ~tG~~~~~~~l~~~~~~~--~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~---  145 (307)
                      |||.+.|+++|.++|++|  |+++|+|++|+.+..+ +...+++|++++|+||+++|++|  .|+++++++.+.+.+   
T Consensus       149 ptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~G--~G~~~~~~~~~~~~l~~~  226 (385)
T 2bkw_A          149 STAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAG--LSISLCSSRFMDYALNDS  226 (385)
T ss_dssp             TTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSC--EEEEEECHHHHHHHTCHH
T ss_pred             CcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCceEEEecCccccccCCc--ceEEEEcHHHHHHHHhhc
Confidence            999999999999999999  9999999999977654 45566899999999998877888  699999866544121   


Q ss_pred             ---------------HH-HHHhc-C-----CCCChhhHHHHhhcccc-----HHHHHHHHHHHHHHHHHHH-hcCCCccE
Q 021783          146 ---------------YF-LQNAE-G-----SGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFL-ASHPRVKK  197 (307)
Q Consensus       146 ---------------~~-~~~~~-~-----~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l-~~~~~~~~  197 (307)
                                     .. ..... +     .+.+.........+++.     +....++..++.+.+.+.| ++. ++ .
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~-~  304 (385)
T 2bkw_A          227 KNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-QL-T  304 (385)
T ss_dssp             HHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-CC-E
T ss_pred             cCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-Cc-e
Confidence                           11 11111 1     12333333333333332     2333455566666777777 543 22 1


Q ss_pred             EecCCCCCCCchHHHhhhcc-CCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcC
Q 021783          198 VNYAGLPEHPGHELHYSQAK-GAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG  276 (307)
Q Consensus       198 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~  276 (307)
                      +..+.            ... ..++++++.+++   ..++.+.|..+||.++.|..+.                      
T Consensus       305 ~~~~~------------~~~~~~~~~~~~~~~~---~~~~~~~l~~~gi~v~~g~~~~----------------------  347 (385)
T 2bkw_A          305 SVSRY------------PSNMSAHGLTAVYVAD---PPDVIAFLKSHGVVIAGGIHKD----------------------  347 (385)
T ss_dssp             ESSCS------------SSTTBCSSCEEEECSC---HHHHHHHHHHTTEECBCCCCTT----------------------
T ss_pred             ecccC------------cccccCCceEEEecCC---HHHHHHHHHHCCeEEeCCCCcc----------------------
Confidence            11100            001 146788888865   5567777777899988775411                      


Q ss_pred             CCCCeEEEE-ec-------cCChHHHHHHHHHHHhcC
Q 021783          277 LTEDLVRIS-VG-------IEDVNDLISDLDKALRTG  305 (307)
Q Consensus       277 ~~~~~iRis-~~-------~~~~~~~i~~l~~~l~~~  305 (307)
                      ..++++||| ++       .++++++++.|+++++++
T Consensus       348 ~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~~  384 (385)
T 2bkw_A          348 IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQRK  384 (385)
T ss_dssp             TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC-
T ss_pred             cCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHhc
Confidence            124679999 65       378889999998888765

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.95  E-value=5.5e-26  Score=196.84  Aligned_cols=243  Identities=14%  Similarity=0.166  Sum_probs=176.3

Q ss_pred             CeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCcccccc---HHHHHHHH
Q 021783           15 EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMA   86 (307)
Q Consensus        15 d~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~---~~~l~~~~   86 (307)
                      |+|+++.|+|.++.    ..++..|++++.++.+     +++++++.+++ ++++++++|+||||.+++   +++|+++|
T Consensus        99 d~vi~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~  173 (361)
T 3ftb_A           99 EKILIIVPSYAEYE----INAKKHGVSVVFSYLDENMCIDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLKLA  173 (361)
T ss_dssp             SEEEEEESCCTHHH----HHHHHTTCEEEEEECCTTSCCCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHHHH
T ss_pred             CcEEEecCChHHHH----HHHHHcCCeEEEeecCcccCCCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHh
Confidence            99999999999887    5567789999999864     66899999988 999999999999999986   77788888


Q ss_pred             HHcCCEEEEeCccCCCCc-------CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChh
Q 021783           87 HAHGALLLVDNSIMSPVL-------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  159 (307)
Q Consensus        87 ~~~~~~li~D~a~~~~~~-------~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (307)
                      ++||+++|+|++|+....       ......+.+++++|+||.+ +.+|+++|+++..++.+.+.+.....  ....+..
T Consensus       174 ~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~g~~~~~~~~~~~~~~~~~~--~~~~~~~  250 (361)
T 3ftb_A          174 EEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFF-AMPGIRFGYGITNNKEIAAKIKAKQN--PWNINCF  250 (361)
T ss_dssp             HHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTT-SCGGGCCEEEEESCHHHHHHHHTTSC--TTCSCHH
T ss_pred             hhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhc-CCCCcceeEEEeCCHHHHHHHHhhCC--CCCCCHH
Confidence            899999999999973322       1222345679999999999 66788999998555656554443222  2245556


Q ss_pred             hHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHH
Q 021783          160 DCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHV  236 (307)
Q Consensus       160 ~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (307)
                      .+..+...++.   +....+...++.+.+.+.+++.+.+..+.                 ...++++++.+++. +...+
T Consensus       251 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~-~~~~l  312 (361)
T 3ftb_A          251 AEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVF-----------------SPHANFVLCRLENI-SGEKL  312 (361)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEE-----------------CCSSSEEEEEESSS-CHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceec-----------------CCCCeEEEEEcCCC-CHHHH
Confidence            66666666653   34445556667777777777665432111                 11366788888753 36778


Q ss_pred             HhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHhc
Q 021783          237 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALRT  304 (307)
Q Consensus       237 ~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~~  304 (307)
                      .+.|..+||.++.|..|.                     +..++++|+|++. ++++++++.|.+..+.
T Consensus       313 ~~~l~~~gi~v~~g~~~~---------------------~~~~~~iRis~~~~~~~~~l~~~l~~~~~~  360 (361)
T 3ftb_A          313 YDSLLKEDIVIRRCCNFI---------------------GLDDSFVRFAIKDEKKNTKFLRALKGVENN  360 (361)
T ss_dssp             HHHHHTTTEECEECTTST---------------------TCCTTEEEEECCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCeEEeeCccCC---------------------CCCCCEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            888887899998887632                     1236789999986 4567778777776654

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.95  E-value=2.2e-26  Score=202.97  Aligned_cols=266  Identities=18%  Similarity=0.121  Sum_probs=174.4

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC--------CChHHHHhhcCCCceEEEEeCCCCCc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIGPWTKLVWVESPTNPR   73 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~--------~d~~~l~~~l~~~~~~v~~~~~~n~t   73 (307)
                      |+ .++.+++++||+|++++|+|+++.    ..++..|++++.++.        .|++++++.+++++++|++++|+|||
T Consensus        98 al~~~~~~~~~~gd~Vl~~~~~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~npt  173 (411)
T 2o0r_A           98 AIAAAVLGLVEPGSEVLLIEPFYDSYS----PVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPT  173 (411)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSCTTT
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCcHhHH----HHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCCCCCC
Confidence            44 445567899999999999999887    556778999998886        37899999999899999999999999


Q ss_pred             ccccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-----Ccc----CCCccEEEeccccccccCCCceeEEEEEcChhH
Q 021783           74 QQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        74 G~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~~----~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~  141 (307)
                      |.+++   +++|.++|++||+++|+|++|+.+...     ...    ..+.|++++|+||++ +++|+|+|++++++ .+
T Consensus       174 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~-~~  251 (411)
T 2o0r_A          174 GAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMF-NCTGWKIGWACGPA-EL  251 (411)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHT-TCTTTCEEEEECCH-HH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhc-CCccceEEEEeeCH-HH
Confidence            99986   599999999999999999999854321     111    246899999999999 57789999999974 45


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhcc
Q 021783          142 AKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  217 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~  217 (307)
                      .+.+...........+...+..+...++.    +....+...++.+.+.+.|++. ++ .+ ..               .
T Consensus       252 ~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~-~~---------------~  313 (411)
T 2o0r_A          252 IAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI-GF-AV-HD---------------S  313 (411)
T ss_dssp             HHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH-TC-EE-CC---------------C
T ss_pred             HHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc-CC-Ee-cC---------------C
Confidence            55554444333333333333333333332    2333444455556666666543 11 11 00               1


Q ss_pred             CCCceEEEEeCCH--HHHHHHHhcCC-cceeecCCCCcccee-ecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CCh
Q 021783          218 GAGSVLSFLTGSL--ALSKHVVETTK-YFSITVSFGSVKSLI-SMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDV  291 (307)
Q Consensus       218 ~~~~~~~~~~~~~--~~~~~~~~~l~-~~gi~v~~g~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~  291 (307)
                      ..+.++++.++..  ....++.+.+. .+||.++.|..|... ..|+         .+.  ....++++|||++.  +++
T Consensus       314 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~---------~~~--~~~~~~~iRis~~~~~e~i  382 (411)
T 2o0r_A          314 YGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQA---------SQQ--ADVWNHLVRFTFCKRDDTL  382 (411)
T ss_dssp             CBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC-------------------CCGGGCEEEECCSCHHHH
T ss_pred             CeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccc---------ccc--ccCCCCeEEEEecCCHHHH
Confidence            1244677777531  12566777664 579999887654210 0010         000  01125679999985  456


Q ss_pred             HHHHHHHHHHHh
Q 021783          292 NDLISDLDKALR  303 (307)
Q Consensus       292 ~~~i~~l~~~l~  303 (307)
                      ++.++.|.++++
T Consensus       383 ~~~~~~l~~~~~  394 (411)
T 2o0r_A          383 DEAIRRLSVLAE  394 (411)
T ss_dssp             HHHHHHHGGGGC
T ss_pred             HHHHHHHHHHHh
Confidence            666666665554

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.95  E-value=9.4e-26  Score=197.38  Aligned_cols=228  Identities=18%  Similarity=0.170  Sum_probs=178.3

Q ss_pred             HH-HHHHHhcCCCCeEEEcC-CCCcchHHHHh------hhcccCCcEEEEecC-----CChHHHHhhcCCCceEEEEeC-
Q 021783            3 AL-AAVTHLLGTGEEIVAGD-DLYGGTDRLLS------RVTPKTGVVVKRVNT-----CDLDEVASAIGPWTKLVWVES-   68 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~-~~~~~~~~~~~------~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~~v~~~~-   68 (307)
                      |+ .++.++++|||+|++++ +.|..+...+.      ..++..|++++.+|.     .|+++++++++++|++|++++ 
T Consensus        89 Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s  168 (409)
T 3jzl_A           89 AISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRS  168 (409)
T ss_dssp             HHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECS
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECC
Confidence            45 56667899999999998 99988875542      456778999999998     599999999999999999999 


Q ss_pred             ---CCCCccccccHHHHHHHHHH--cCCEEEEeCccCCCCc-CCccCCCccEEEeccccccccCCCceeEEEEEcChhHH
Q 021783           69 ---PTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  142 (307)
Q Consensus        69 ---~~n~tG~~~~~~~l~~~~~~--~~~~li~D~a~~~~~~-~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~  142 (307)
                         |+||+|.+.|+++|.++|++  +|+++++|++|+.+.. ..+...|+|++++|+||+++|+...++|+++++++ +.
T Consensus       169 ~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~-li  247 (409)
T 3jzl_A          169 RGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEA-LV  247 (409)
T ss_dssp             CTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHH-HH
T ss_pred             CCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccccCCccccCCeEEEECccccCCccCCceEEEEEeCHH-HH
Confidence               99999999999999999999  9999999999998874 46777899999999999997654455899999854 54


Q ss_pred             HHHHHHHHh--cC--CCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          143 KELYFLQNA--EG--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       143 ~~~~~~~~~--~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      +.+......  .+  ........+.+..+++....++++..+++..+.+.|+.++.  .+ ++. .+.|.          
T Consensus       248 ~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~~~r~~~~~~~a~~la~~L~~~g~--~v-~p~-~~~~~----------  313 (409)
T 3jzl_A          248 DLCGYRLTTPGIGREAGASLYSLLEMYQGFFLAPHVTAQAIKGARFTAAMLAEFGV--EA-DPV-WDAPR----------  313 (409)
T ss_dssp             HHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EE-ESC-TTSCC----------
T ss_pred             HHHHHHhccccccccccccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCC--cc-cCC-CCCCC----------
Confidence            444443221  11  12222235667788888889999999999999999998863  33 444 22222          


Q ss_pred             CCceEEEEeCCHHHHHHHHhcCCccee
Q 021783          219 AGSVLSFLTGSLALSKHVVETTKYFSI  245 (307)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~l~~~gi  245 (307)
                      ...++.|.+++.+.+..+.+.|+....
T Consensus       314 ~~~i~~i~l~~~~~~~~~~~~L~~~~~  340 (409)
T 3jzl_A          314 TDLIQSVSFHNKEKMVAFAQAIQAASP  340 (409)
T ss_dssp             SSSCCEEECSCHHHHHHHHHHHHHTSS
T ss_pred             ccEEEEEEeCCHHHHHHHHHHHHhcCc
Confidence            234788889888888999999887654

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.95  E-value=5.3e-26  Score=200.75  Aligned_cols=256  Identities=14%  Similarity=0.095  Sum_probs=175.0

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-------CChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++++||+|++++|+|+++.    ..++..|++++.++.       .|++++++.++++++++++++|+||||
T Consensus       116 al~~~~~~l~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG  191 (416)
T 1bw0_A          116 GILMAITAICDAGDYALVPQPGFPHYE----TVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCG  191 (416)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTHHH----HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTC
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCcHhHH----HHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccCCeEEEEeCCCCCCC
Confidence            45 455567899999999999998877    556778999988875       278999999998899999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCc---------CCcc---CCCccEEEeccccccccCCCceeEEEEEcCh
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVL---------SRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~---------~~~~---~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      .+++   +++|.++|++||+++|+|++|+....         ....   ..+.+++++|+||++ +.+|+|+|+++++++
T Consensus       192 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~Glr~G~~~~~~~  270 (416)
T 1bw0_A          192 SNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNL-VVPGWRLGWLLYVDP  270 (416)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTT-SCGGGCCEEEEEECT
T ss_pred             cccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhC-CCCCceEEEEEeeCc
Confidence            9998   99999999999999999999975221         1111   223468999999998 457899999999875


Q ss_pred             -hHHH----HHHHHHHhcCCCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCch
Q 021783          140 -RLAK----ELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGH  209 (307)
Q Consensus       140 -~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~  209 (307)
                       .+.+    ....... .....+...+..+...++     .+....++..++.+.+.+.|++.+++. +..         
T Consensus       271 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~---------  339 (416)
T 1bw0_A          271 HGNGPSFLEGLKRVGM-LVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLA-PTM---------  339 (416)
T ss_dssp             TCSCHHHHHHHHHHHH-HHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEE-ECC---------
T ss_pred             hhhHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccC---------
Confidence             2222    1112111 122344444444444443     233445555666667777776543221 100         


Q ss_pred             HHHhhhccCCCceEEEEeCCH-----HHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEE
Q 021783          210 ELHYSQAKGAGSVLSFLTGSL-----ALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVR  283 (307)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iR  283 (307)
                             ...+.++++.++..     .....+.+.+ ..+||.+++|..|.                       .++++|
T Consensus       340 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~-----------------------~~~~iR  389 (416)
T 1bw0_A          340 -------PRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH-----------------------APGFTR  389 (416)
T ss_dssp             -------CCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGT-----------------------CTTEEE
T ss_pred             -------CCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccC-----------------------CCCeEE
Confidence                   11355667776521     2356677776 57899988876532                       145799


Q ss_pred             EEecc--CChHHHHHHHHHHHhc
Q 021783          284 ISVGI--EDVNDLISDLDKALRT  304 (307)
Q Consensus       284 is~~~--~~~~~~i~~l~~~l~~  304 (307)
                      ||++.  +++++.++.|.+++++
T Consensus       390 is~~~~~e~l~~~l~~l~~~l~~  412 (416)
T 1bw0_A          390 LTTTRPVEVYREAVERIKAFCQR  412 (416)
T ss_dssp             EECCSCHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCHHHHHHHHHHHHHHHHH
Confidence            99975  5677777777777754

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.94  E-value=1.6e-25  Score=198.41  Aligned_cols=258  Identities=14%  Similarity=0.125  Sum_probs=177.2

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcC------CCceEEEEeC
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG------PWTKLVWVES   68 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~------~~~~~v~~~~   68 (307)
                      |+ .++.+++++||+|+++.|+|.++..   .++...|++++.++.+       |+++++++++      +++++|++++
T Consensus       120 ai~~~~~~~~~~gd~Vl~~~p~y~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~  196 (428)
T 1iay_A          120 ANETIIFCLADPGDAFLVPSPYYPAFNR---DLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTN  196 (428)
T ss_dssp             HHHHHHHHHCCTTCEEEEESSCCTTHHH---HTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred             HHHHHHHHhCCCCCeEEEccCCCcchHH---HHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcC
Confidence            44 4555678999999999999988762   2345789999999863       7889988875      3789999999


Q ss_pred             CCCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-----CccC---------CCcc--EEEeccccccccCCCc
Q 021783           69 PTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLE---------LGAD--IVMHSATKFIAGHSDV  129 (307)
Q Consensus        69 ~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~~~---------~~~d--~~~~s~~K~~~g~~g~  129 (307)
                      |+||||.+++   +++|.++|++||+++|+|++|+...+.     ....         ++.|  +++.|+||++ |.+|+
T Consensus       197 p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~-g~~Gl  275 (428)
T 1iay_A          197 PSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM-GLPGF  275 (428)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTS-SCGGG
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhc-CCCCc
Confidence            9999999998   999999999999999999999753221     1111         1145  9999999999 66799


Q ss_pred             eeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccH-------HHHHHHHHHHHHHHHHHHhcCCCccEEecCC
Q 021783          130 MAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM-------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAG  202 (307)
Q Consensus       130 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  202 (307)
                      |+|+++++++.+.+.+......  ...+...+..+...++..       +...+.+.++.+.+.+.|++. ++ .+    
T Consensus       276 r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~----  347 (428)
T 1iay_A          276 RVGIIYSFNDDVVNCARKMSSF--GLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GI-KC----  347 (428)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTT--SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TC-CB----
T ss_pred             eEEEEEeCCHHHHHHHHHHHhc--ccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-cc----
Confidence            9999999656565555543322  234445555555555432       223444455566666666654 11 00    


Q ss_pred             CCCCCchHHHhhhccCCCceEEEEeCCH------HHHHHHHhcCCcc-eeecCCCCccceeecccccCCCCCcHHHHHhc
Q 021783          203 LPEHPGHELHYSQAKGAGSVLSFLTGSL------ALSKHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVEVRQAR  275 (307)
Q Consensus       203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~-gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~  275 (307)
                         .        . ...+.++++.++..      +....+.+.|..+ ||.++.|..+..                    
T Consensus       348 ---~--------~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~--------------------  395 (428)
T 1iay_A          348 ---L--------K-NNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFEC--------------------  395 (428)
T ss_dssp             ---C--------C-CSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC--------------------
T ss_pred             ---c--------C-CCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCC--------------------
Confidence               0        0 11355677777532      2356788888665 999887765321                    


Q ss_pred             CCCCCeEEEEecc---CChHHHHHHHHHHHhcC
Q 021783          276 GLTEDLVRISVGI---EDVNDLISDLDKALRTG  305 (307)
Q Consensus       276 ~~~~~~iRis~~~---~~~~~~i~~l~~~l~~~  305 (307)
                       ..++++||+++.   +++++.++.|.+++++.
T Consensus       396 -~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~  427 (428)
T 1iay_A          396 -QEPGWFRVCFANMDDGTVDIALARIRRFVGVE  427 (428)
T ss_dssp             -SSSSEEEEECSSSCHHHHHHHHHHHHHHHHTT
T ss_pred             -CCCCEEEEEEecCCHHHHHHHHHHHHHHHhcc
Confidence             125679999982   67888888888887653

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.94  E-value=1.2e-26  Score=205.51  Aligned_cols=262  Identities=14%  Similarity=0.117  Sum_probs=177.9

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcCC--------CceEEE-EeC
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGP--------WTKLVW-VES   68 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~~--------~~~~v~-~~~   68 (307)
                      |+ .++.+++++||+|+++.|+|+++.    ..++..|++++.+|.+    |++++++.+++        ++++|+ +++
T Consensus       121 al~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~  196 (425)
T 1vp4_A          121 ALDLIGKLFLDDESYCVLDDPAYLGAI----NAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSN  196 (425)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECS
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCcHHHH----HHHHHcCCEEEEeccCCCCCCHHHHHHHHHhhhhcccCCCceEEEECCC
Confidence            45 455567899999999999998887    5566789999998873    88999988865        788884 789


Q ss_pred             CCCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-----Cc---cCCCccEEEeccccccccCCCceeEEEEEc
Q 021783           69 PTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RP---LELGADIVMHSATKFIAGHSDVMAGVLAVK  137 (307)
Q Consensus        69 ~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~---~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~  137 (307)
                      |+||||.+++   +++|.++|++||+++|+|++|+.....     ..   ...+.+++++|+||++ + +|+|+|+++++
T Consensus       197 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~-~G~r~G~~~~~  274 (425)
T 1vp4_A          197 FHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVL-A-PGLRIGMVAGS  274 (425)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTT-C-GGGCEEEEECC
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEecccccc-c-cccceEEEeeC
Confidence            9999999986   678999999999999999999864321     11   1235789999999999 5 79999999998


Q ss_pred             ChhHHHHHHHHHHhcCCCCChhhHHHHhhcccc------HHHHHHHHHHHHHHHHHHHhcC-CCccEEecCCCCCCCchH
Q 021783          138 GERLAKELYFLQNAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHE  210 (307)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~l~~~~~~~  210 (307)
                      ++ +.+.+...........+...++.+...++.      ++...+.+.++.+.+.+.|++. +..           +++.
T Consensus       275 ~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-----------~g~~  342 (425)
T 1vp4_A          275 KE-FIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDI-----------PGVK  342 (425)
T ss_dssp             HH-HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTS-----------TTCE
T ss_pred             HH-HHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----------CceE
Confidence            44 555554443333233355555555444432      2233444455666677766643 210           0111


Q ss_pred             HHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--
Q 021783          211 LHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--  288 (307)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--  288 (307)
                      ..  . ...+.++++.++...+...+.+.|..+||.+++|..|..                   .+..++++|||++.  
T Consensus       343 ~~--~-~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~-------------------~~~~~~~iRis~~~~~  400 (425)
T 1vp4_A          343 WV--K-SEGGLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKV-------------------YDEPSPSMRLSFCLPP  400 (425)
T ss_dssp             EC--C-CSBSSEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCT-------------------TCCCCSEEEEECSSSC
T ss_pred             Ee--c-CCccEEEEEEcCCCCCHHHHHHHHHHCCCEEECchhhcC-------------------CCCCCCeEEEEeCCCC
Confidence            00  0 123567788875322245666777777998888765321                   01135789999986  


Q ss_pred             -CChHHHHHHHHHHHhc
Q 021783          289 -EDVNDLISDLDKALRT  304 (307)
Q Consensus       289 -~~~~~~i~~l~~~l~~  304 (307)
                       +++++.++.|.+++++
T Consensus       401 ~e~i~~~l~~l~~~l~~  417 (425)
T 1vp4_A          401 DEKIVEGIKRLREVVLE  417 (425)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence             5777888888877753

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.94  E-value=2.4e-26  Score=200.20  Aligned_cols=252  Identities=12%  Similarity=0.029  Sum_probs=176.9

Q ss_pred             HH-HHHHHhcCC--CCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChH----HHHhhcCCCceEEEEeCCCCCccc
Q 021783            3 AL-AAVTHLLGT--GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLD----EVASAIGPWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         3 al-~~~~~~~~~--gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~----~l~~~l~~~~~~v~~~~~~n~tG~   75 (307)
                      |+ .++..++++  ||+|+++.|+|.++.    ..++..|++++.++.++.+    ++++.+.++++++++++|+||||.
T Consensus        94 al~~~~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~  169 (376)
T 3ezs_A           94 VLFNFPSFVLFDYQNPTIAYPNPFYQIYE----GAAKFIKAKSLLMPLTKENDFTPSLNEKELQEVDLVILNSPNNPTGR  169 (376)
T ss_dssp             HHHHHHHHHTTTCSSCEEEEEESCCTHHH----HHHHHTTCEEEEEECCGGGTSCCCCCHHHHHHCSEEEECSSCTTTCC
T ss_pred             HHHHHHHHHcCCCCCCEEEEecCCcHhHH----HHHHHcCCEEEEcccCCCCCcchhHHhhhccCCCEEEEcCCCCCcCC
Confidence            45 455567899  999999999998877    5677889999999975322    555666667899999999999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCccCCCCcC----Ccc---------CCCccEEEeccccccccCCCceeEEEEEcCh
Q 021783           76 ICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RPL---------ELGADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        76 ~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~----~~~---------~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      +++   +++|+++|++||+++|+|++|+.....    ...         ..+.+++++|+||++ |.+|+|+|+++.+ +
T Consensus       170 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~-~  247 (376)
T 3ezs_A          170 TLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRS-SAPGLRSGFIAGD-S  247 (376)
T ss_dssp             CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTT-TCGGGCCEEEEEC-H
T ss_pred             CCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhcc-CCccceeEEEeeC-H
Confidence            987   777888899999999999999853321    111         457899999999999 6678999999986 4


Q ss_pred             hHHHHHHHHHHhcCCCCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhc
Q 021783          140 RLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  216 (307)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~  216 (307)
                      .+.+.+...........+...+..+...++.   +....+.+.++.+.+.+.++           ++. .          
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~-----------~~~-~----------  305 (376)
T 3ezs_A          248 RLLEKYKAFRAYLGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFK-----------NTL-I----------  305 (376)
T ss_dssp             HHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST-----------TCC-C----------
T ss_pred             HHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhc-----------CCC-C----------
Confidence            4555565555544555566555555555432   23333344444444444443           111 1          


Q ss_pred             cCCCceEEEEeCCHHHHHHHHhcCCc-ceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHH
Q 021783          217 KGAGSVLSFLTGSLALSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVND  293 (307)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~  293 (307)
                      ...+.++++.++   ....+.+.|.. +||.+++|..|..                   .+..++++|||++.  +++++
T Consensus       306 ~~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~~~~-------------------~~~~~~~iRis~~~~~~~i~~  363 (376)
T 3ezs_A          306 YPYSFYVYLPVQ---NGENFAKTLYQNEGIITLPALYLGR-------------------NRIGADYVRLALVYDTPLLEK  363 (376)
T ss_dssp             CSBSSEEEEECS---CHHHHHHHHHHHHCCBCEEGGGGCS-------------------TTTTTTEEEEECCSCHHHHHH
T ss_pred             CCcceEEEEECC---CHHHHHHHHHHhCCEEEeCcHHhCC-------------------CCCCCCeEEEEEcCCHHHHHH
Confidence            224667777776   35677777766 7999988876431                   01246789999965  67778


Q ss_pred             HHHHHHHHHhc
Q 021783          294 LISDLDKALRT  304 (307)
Q Consensus       294 ~i~~l~~~l~~  304 (307)
                      .++.|.+++++
T Consensus       364 ~l~~l~~~l~~  374 (376)
T 3ezs_A          364 PLEIIETYREN  374 (376)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHHh
Confidence            88888887765

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.94  E-value=1.1e-26  Score=203.44  Aligned_cols=261  Identities=16%  Similarity=0.192  Sum_probs=181.8

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCC-CceEEEEeCCCCCccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP-WTKLVWVESPTNPRQQ   75 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~-~~~~v~~~~~~n~tG~   75 (307)
                      |+ .++.+++++||+|+++.++|.+..  +...++..|++++.++.+     |++++++.+++ ++++|++++++||||.
T Consensus        86 al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~  163 (393)
T 3kgw_A           86 AMETALFNLLEPGDSFLTGTNGIWGMR--AAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGV  163 (393)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTE
T ss_pred             HHHHHHHhcCCCCCEEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchh
Confidence            45 556667899999999988875432  225667889999999863     89999999986 8999999999999999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH-----
Q 021783           76 ICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-----  149 (307)
Q Consensus        76 ~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~-----  149 (307)
                      +.|+++|.++|++||+++|+|++|+.+... ....++.|++++|+||+++|+.|  +|+++++++.. +.+....     
T Consensus       164 ~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g--~g~~~~~~~~~-~~~~~~~~~~~~  240 (393)
T 3kgw_A          164 VQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPG--ISLISFNDKAK-YKVYSRKTKPVS  240 (393)
T ss_dssp             ECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCSS--CEEEEECHHHH-HHHHTCSSCCSC
T ss_pred             hccHHHHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCcccccCCCc--eeEEEECHHHH-HHHhccCCCCCc
Confidence            999999999999999999999999977654 55667899999999998877777  89999986543 3332110     


Q ss_pred             ----------Hh--------cCCCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCC
Q 021783          150 ----------NA--------EGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH  206 (307)
Q Consensus       150 ----------~~--------~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~  206 (307)
                                ..        ...+.+.........+++     .+....++..++.+.+.+.|++. ++. +..+     
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~-----  313 (393)
T 3kgw_A          241 FYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GLK-FFVK-----  313 (393)
T ss_dssp             STTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-BSSS-----
T ss_pred             eeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCe-eccC-----
Confidence                      00        011223333333333332     23444566666777777777654 110 0000     


Q ss_pred             CchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcc-eeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEE
Q 021783          207 PGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS  285 (307)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis  285 (307)
                             ......+.++++.++......++.+.|..+ ||.++.|..+.                       .++++|++
T Consensus       314 -------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-----------------------~~~~iRi~  363 (393)
T 3kgw_A          314 -------DPEIRLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPT-----------------------EERVLRIG  363 (393)
T ss_dssp             -------SGGGBCSSEEEEECCTTBCHHHHHHHHHHHHCEECBCCCGGG-----------------------TTTEEEEE
T ss_pred             -------ChhhcCCeEEEEeCCCCCCHHHHHHHHHHhCCEEEeCCcccC-----------------------CCCEEEEE
Confidence                   000112456677775433467788888776 99998876311                       25679999


Q ss_pred             e-c----cCChHHHHHHHHHHHhcC
Q 021783          286 V-G----IEDVNDLISDLDKALRTG  305 (307)
Q Consensus       286 ~-~----~~~~~~~i~~l~~~l~~~  305 (307)
                      + +    .++++++++.|.++++++
T Consensus       364 ~~~~~~~~~~i~~~~~~l~~~l~~~  388 (393)
T 3kgw_A          364 LLGYNATTENVDRVAEALREALQHC  388 (393)
T ss_dssp             CCGGGCCHHHHHHHHHHHHHHHHHS
T ss_pred             ecccCCCHHHHHHHHHHHHHHHHhh
Confidence            8 5    378888899998888754

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.94  E-value=1.7e-26  Score=200.78  Aligned_cols=247  Identities=13%  Similarity=0.141  Sum_probs=175.8

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCC-CceEEEEeCCCCCccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP-WTKLVWVESPTNPRQQ   75 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~-~~~~v~~~~~~n~tG~   75 (307)
                      |+ .++.+++++||+|++++|+|+++.    ..++..|++++.+|.+     |++++++.+++ ++++|++++|+||||.
T Consensus       104 al~~~~~~l~~~gd~Vl~~~~~y~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~  179 (369)
T 3cq5_A          104 ILQQLLQAFGGPGRTALGFQPSYSMHP----ILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGD  179 (369)
T ss_dssp             HHHHHHHHHCSTTCEEEEEESSCTHHH----HHHHHTTCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCC
T ss_pred             HHHHHHHHhcCCCCEEEEcCCChHHHH----HHHHHcCCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCC
Confidence            45 455567899999999999998887    5567789999999863     78999999876 8899999999999999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCccCCCCcC-C----ccCCC-ccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           76 ICDIRKIAEMAHAHGALLLVDNSIMSPVLS-R----PLELG-ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        76 ~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~----~~~~~-~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                      +.|.+++.++++.+++++|+|++|+.+... .    ...++ .+++++|+||++ |.+|+|+|+++++++ +.+.+....
T Consensus       180 ~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~-~~~~l~~~~  257 (369)
T 3cq5_A          180 VTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAF-DFAGGRLGYFVANPA-FIDAVMLVR  257 (369)
T ss_dssp             CCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTT-SCGGGCCEEEEECTH-HHHHHHTTS
T ss_pred             CCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhc-CCcccceEEEEeCHH-HHHHHHHcC
Confidence            999999999999999999999999855421 1    12345 789999999999 556889999999865 433333222


Q ss_pred             HhcCCCCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEE
Q 021783          150 NAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  226 (307)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  226 (307)
                      .  ....+...++.+...++.   +....+...++.+.+.+.+++. ++ .+.                 +..++++++.
T Consensus       258 ~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~-----------------~~~~~~~~~~  316 (369)
T 3cq5_A          258 L--PYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL-GY-AVV-----------------PSESNFVFFG  316 (369)
T ss_dssp             C--TTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH-TC-EEE-----------------CCSSSEEEEE
T ss_pred             C--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC-CC-EEC-----------------CCCCeEEEEE
Confidence            1  123445555555555543   3334455556666666666642 11 111                 1135677887


Q ss_pred             eCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHhc
Q 021783          227 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALRT  304 (307)
Q Consensus       227 ~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~~  304 (307)
                      ++  .+...+.+.|..+||.++.|.                          .++++|+|++. ++++++++.|.++++.
T Consensus       317 ~~--~~~~~l~~~l~~~gi~v~~~~--------------------------~~~~iRis~~~~~~i~~~~~~l~~~~~~  367 (369)
T 3cq5_A          317 DF--SDQHAAWQAFLDRGVLIRDVG--------------------------IAGHLRTTIGVPEENDAFLDAAAEIIKL  367 (369)
T ss_dssp             CC--SSHHHHHHHHHHTTEECBCCS--------------------------CTTEEEEECCCHHHHHHHHHHHHHHHTT
T ss_pred             CC--CCHHHHHHHHHHCCEEEEECC--------------------------CCCeEEEEeCCHHHHHHHHHHHHHHHhc
Confidence            75  235667777778899887762                          14569999985 5667777777776643

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.94  E-value=4.9e-26  Score=199.00  Aligned_cols=256  Identities=15%  Similarity=0.142  Sum_probs=173.1

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC------CChHHHHhhcCCCceEEEEeCCCCCccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT------CDLDEVASAIGPWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~------~d~~~l~~~l~~~~~~v~~~~~~n~tG~   75 (307)
                      |+ .++.+++++||+|++++|+|+++.    ..++..|++++.++.      .|++++++.+++++++|++++|+||||.
T Consensus       103 a~~~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~  178 (386)
T 1u08_A          103 ALYAAITALVRNGDEVICFDPSYDSYA----PAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSAT  178 (386)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCC
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCchhHH----HHHHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCCCCc
Confidence            44 445557899999999999999887    556778999999986      3789999999989999999999999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCccCCCCc-----CCcc----CCCccEEEeccccccccCCCceeEEEEEcChhHHH
Q 021783           76 ICD---IRKIAEMAHAHGALLLVDNSIMSPVL-----SRPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        76 ~~~---~~~l~~~~~~~~~~li~D~a~~~~~~-----~~~~----~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~  143 (307)
                      +++   +++|.++|++||+++|+|++|+....     ....    ..+.|++++|+||++ +++|+|+|+++++++ +.+
T Consensus       179 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~-~~~  256 (386)
T 1u08_A          179 VWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTY-HMTGWKVGYCVAPAP-ISA  256 (386)
T ss_dssp             CCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHT-TCGGGCCEEEECCHH-HHH
T ss_pred             cCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhc-CCcccceEEEEcCHH-HHH
Confidence            985   78999999999999999999975321     1111    247899999999999 567899999999754 555


Q ss_pred             HHHHHHHhcCCCCChhhHHHHhhcccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCC
Q 021783          144 ELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  219 (307)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (307)
                      .+...........+...+..+...++.    +....+...++.+.+.+.|++. ++ .+             .  . ...
T Consensus       257 ~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~-------------~--~-~~~  318 (386)
T 1u08_A          257 EIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNES-RL-EI-------------L--P-CEG  318 (386)
T ss_dssp             HHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSS-SC-EE-------------C--C-CCB
T ss_pred             HHHHHHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC-CC-ee-------------c--C-CCc
Confidence            555444333333344444444444432    2233344455555566555543 11 11             0  0 112


Q ss_pred             CceEEEEeCCH--HHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHH
Q 021783          220 GSVLSFLTGSL--ALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS  296 (307)
Q Consensus       220 ~~~~~~~~~~~--~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~  296 (307)
                      +.++++.+++.  .+...+.+.+. .+||.++.|..|...                   ...++++|+|++.  .++.++
T Consensus       319 g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~-------------------~~~~~~iRis~~~--~~~~i~  377 (386)
T 1u08_A          319 TYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCAD-------------------PFPHKLIRLCFAK--KESTLL  377 (386)
T ss_dssp             SSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSS-------------------CCCSCEEEEECCS--CHHHHH
T ss_pred             eEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCC-------------------CCCCCEEEEEEcC--CHHHHH
Confidence            55778887643  23567777664 579998877653210                   0135789999985  344455


Q ss_pred             HHHHHHh
Q 021783          297 DLDKALR  303 (307)
Q Consensus       297 ~l~~~l~  303 (307)
                      .+.+.|+
T Consensus       378 ~~~~~l~  384 (386)
T 1u08_A          378 AAAERLR  384 (386)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            5555444

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.94  E-value=4.3e-26  Score=200.74  Aligned_cols=259  Identities=16%  Similarity=0.175  Sum_probs=178.7

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcC----C--CceEEE-EeCCC
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIG----P--WTKLVW-VESPT   70 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~----~--~~~~v~-~~~~~   70 (307)
                      |+ .++.+++++||+|+++.|+|+++.    ..++..|++++.+|.+    |++++++.++    +  ++++|+ +++++
T Consensus       110 a~~~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~  185 (407)
T 2zc0_A          110 ALDLLGRVLIDPGDVVITENPSYINTL----LAFEQLGAKIEGVPVDNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQ  185 (407)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSC
T ss_pred             HHHHHHHHhcCCCCEEEEeCCChHHHH----HHHHHcCCEEEEcccCCCCCCHHHHHHHHHhhhcccCCceEEEECCCCC
Confidence            44 455567889999999999998877    5567789999998873    8899999887    5  788874 67999


Q ss_pred             CCccccccHH---HHHHHHHHcCCEEEEeCccCCCCcC-----Ccc---CCCccEEEeccccccccCCCceeEEEEEcCh
Q 021783           71 NPRQQICDIR---KIAEMAHAHGALLLVDNSIMSPVLS-----RPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        71 n~tG~~~~~~---~l~~~~~~~~~~li~D~a~~~~~~~-----~~~---~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      ||||.+.|.+   +|.++|++||+++|+|++|+.+...     ...   ..+.+++++|+||++ + +|+++|+++++ +
T Consensus       186 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~-~G~r~G~~~~~-~  262 (407)
T 2zc0_A          186 NPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVL-G-TGFRIGWIIAE-G  262 (407)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTT-C-TTSCCEEEECC-H
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEccccccc-C-CCcceEEEecC-H
Confidence            9999999865   9999999999999999999864321     121   225679999999999 5 68899999997 4


Q ss_pred             hHHHHHHHHHHhcCCCCChhhHHHHhhcccc-------HHHHHHHHHHHHHHHHHHHhcC-CCccEEecCCCCCCCchHH
Q 021783          140 RLAKELYFLQNAEGSGLAPFDCWICLRGVKT-------MALRVEKQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHEL  211 (307)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~l~~~~~~~~  211 (307)
                      .+.+.+...........+...+..+...++.       +....+...++.+.+.+.|++. +.+        .      +
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~--------~------~  328 (407)
T 2zc0_A          263 EILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNA--------E------F  328 (407)
T ss_dssp             HHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTS--------C------B
T ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--------E------E
Confidence            4555555444433333344444444444332       1222344455556666666542 211        0      0


Q ss_pred             HhhhccCCCceEEEEeCCHHHHHHHHhcCCcc-eeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--
Q 021783          212 HYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--  288 (307)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--  288 (307)
                      .  . ...+.++++.++...+..++.+.|..+ ||.++.|..|..                   .+..++++|||++.  
T Consensus       329 ~--~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~-------------------~~~~~~~iRis~~~~~  386 (407)
T 2zc0_A          329 T--K-PIAGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYT-------------------DESGKNAIRLNFSRPS  386 (407)
T ss_dssp             C--C-CSBSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCS-------------------SSCCTTEEEEECSSSC
T ss_pred             e--c-CCCcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccC-------------------CCCCCCeEEEEeCCCC
Confidence            0  0 113557788885332367788888777 999998875321                   01135789999985  


Q ss_pred             -CChHHHHHHHHHHHhc
Q 021783          289 -EDVNDLISDLDKALRT  304 (307)
Q Consensus       289 -~~~~~~i~~l~~~l~~  304 (307)
                       +++++.++.|.+++++
T Consensus       387 ~~~i~~~~~~l~~~l~~  403 (407)
T 2zc0_A          387 KEEIPIGIKKLAKLYKE  403 (407)
T ss_dssp             TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence             6788888888888764

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.94  E-value=1.5e-25  Score=196.70  Aligned_cols=228  Identities=18%  Similarity=0.143  Sum_probs=178.8

Q ss_pred             HH-HHHHHhcCCCCeEEEcC-CCCcchHHHHh-------hhcccCCcEEEEecC----CChHHHHhhcC--CCceEEEEe
Q 021783            3 AL-AAVTHLLGTGEEIVAGD-DLYGGTDRLLS-------RVTPKTGVVVKRVNT----CDLDEVASAIG--PWTKLVWVE   67 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~-~~~~~~~~~~~-------~~~~~~g~~~~~v~~----~d~~~l~~~l~--~~~~~v~~~   67 (307)
                      |+ .++.++++|||+|++++ +.|.++...+.       ..++..|++++.+|.    .|+++++++++  ++|++|+++
T Consensus       104 A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~  183 (427)
T 3hvy_A          104 AIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQ  183 (427)
T ss_dssp             HHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEE
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEE
Confidence            45 56667899999999999 99988765441       456678999999998    69999999998  899999999


Q ss_pred             C----CCCCccccccHHHHHHHHHH--cCCEEEEeCccCCCC-cCCccCCCccEEEeccccccccCCCceeEEEEEcChh
Q 021783           68 S----PTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  140 (307)
Q Consensus        68 ~----~~n~tG~~~~~~~l~~~~~~--~~~~li~D~a~~~~~-~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~  140 (307)
                      +    |+||+|.+.|+++|.++|++  +|+++++|++|+.+. ...+...|+|++++|+||+++|....++|+++++++ 
T Consensus       184 ~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~-  262 (427)
T 3hvy_A          184 RSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEE-  262 (427)
T ss_dssp             SSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHH-
T ss_pred             CCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccCCCCcccCCeEEEECCcccccccccceEEEEEECHH-
Confidence            9    99999999999999999999  899999999999887 457777899999999999997643345899999854 


Q ss_pred             HHHHHHHHH--HhcCC--CCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhc
Q 021783          141 LAKELYFLQ--NAEGS--GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  216 (307)
Q Consensus       141 ~~~~~~~~~--~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~  216 (307)
                      +.+.+....  ...+.  ..+...++++..+++....+.++..+++..+.+.|+.++.  .+ +++ .+.|.        
T Consensus       263 li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~~~r~~~~~~~a~~la~~L~~~g~--~V-~p~-~~~~~--------  330 (427)
T 3hvy_A          263 YVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMAPHVTIEAVKGAVFCARIMELAGF--DV-LPK-YNDKR--------  330 (427)
T ss_dssp             HHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EE-ESC-TTSCC--------
T ss_pred             HHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhCCC--ee-cCC-CCCCC--------
Confidence            545454432  22221  1222347888888888889999999999999999998863  33 444 22222        


Q ss_pred             cCCCceEEEEeCCHHHHHHHHhcCCccee
Q 021783          217 KGAGSVLSFLTGSLALSKHVVETTKYFSI  245 (307)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi  245 (307)
                        ...++.|.+++.+.+..+.+.++....
T Consensus       331 --~~li~~~~l~~~~~~~~f~~~l~~~~~  357 (427)
T 3hvy_A          331 --TDIIQAIKFNDEKKLIDFIKGIQTASP  357 (427)
T ss_dssp             --SSSEEEEECSSHHHHHHHHHHHHHTCS
T ss_pred             --ceEEEEEeCCCHHHHHHHHHHhccccc
Confidence              234888999888888899988877543

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.94  E-value=2.1e-26  Score=203.73  Aligned_cols=258  Identities=16%  Similarity=0.174  Sum_probs=178.8

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC--------ChHHHHhhcC-CCceEEEEeCCCCC
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--------DLDEVASAIG-PWTKLVWVESPTNP   72 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--------d~~~l~~~l~-~~~~~v~~~~~~n~   72 (307)
                      |+ .++..++++||+|+++.|+|.++.    ..++..|.+++.+|.+        |+++++++++ +++++|++++|+||
T Consensus       131 a~~~a~~~~~~~gd~Vi~~~~~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~np  206 (421)
T 3l8a_A          131 AISIALQAFSEKGDAVLINSPVYYPFA----RTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNP  206 (421)
T ss_dssp             HHHHHHHHHSCTEEEEEEEESCCHHHH----HHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTT
T ss_pred             HHHHHHHHhcCCCCEEEECCCCcHHHH----HHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCC
Confidence            44 455667899999999999998887    5566789999998863        8999999998 79999999999999


Q ss_pred             ccccc---cHHHHHHHHHHcCCEEEEeCccCCCCc-----CC-----ccCCCccEEEeccccccccCCCceeEEEEEcCh
Q 021783           73 RQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVL-----SR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        73 tG~~~---~~~~l~~~~~~~~~~li~D~a~~~~~~-----~~-----~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      +|.++   ++++|.++|++||+++|+|++|+....     ..     ....+.++++.|+||++ +.+|+++|+++++++
T Consensus       207 tG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~~~G~~~~~~~  285 (421)
T 3l8a_A          207 GGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTF-NIAGTKNSFAIIQNE  285 (421)
T ss_dssp             TTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHH-TCGGGCCEEEECCSH
T ss_pred             CCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhc-cCchhheEeEEcCCH
Confidence            99984   699999999999999999999974221     11     12236779999999999 667888999999866


Q ss_pred             hHHHHHHHHHHhc-CCCCChhhHHHHhhccc----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhh
Q 021783          140 RLAKELYFLQNAE-GSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS  214 (307)
Q Consensus       140 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~  214 (307)
                      .+.+.+....... ....++..+..+...++    .++...+...++.+.+.+.+++.+.+.. ..+             
T Consensus       286 ~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~-~~~-------------  351 (421)
T 3l8a_A          286 SLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEAKTKIKV-MEP-------------  351 (421)
T ss_dssp             HHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSCEE-ECC-------------
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCceE-eCC-------------
Confidence            6766665554332 33455555554444443    2344455556666677777765433311 111             


Q ss_pred             hccCCCceEEEEeCCH-HHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CC
Q 021783          215 QAKGAGSVLSFLTGSL-ALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--ED  290 (307)
Q Consensus       215 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~  290 (307)
                         ..+.+.++.+... ....++.+.|. ..||.++.|..|..                     ..++++||+++.  ++
T Consensus       352 ---~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~---------------------~~~~~iRi~~~~~~~~  407 (421)
T 3l8a_A          352 ---EGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGK---------------------EGKYFARLNVATPKNT  407 (421)
T ss_dssp             ---SBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCG---------------------GGTTEEEEECCSCHHH
T ss_pred             ---CeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCC---------------------CCCCEEEEEecCCHHH
Confidence               1133444666431 12556777774 56999988776321                     136789999985  56


Q ss_pred             hHHHHHHHHHHHh
Q 021783          291 VNDLISDLDKALR  303 (307)
Q Consensus       291 ~~~~i~~l~~~l~  303 (307)
                      +++.++.|.++++
T Consensus       408 i~~~l~~l~~~l~  420 (421)
T 3l8a_A          408 VQEALSRIISVFG  420 (421)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHh
Confidence            7777777777654

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.94  E-value=1.5e-26  Score=200.53  Aligned_cols=250  Identities=16%  Similarity=0.167  Sum_probs=174.0

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcC-CCceEEEEeCCCCCccccccHH
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      |+ .++.+++++||+|+++.|+|.++.    ..++..|++++.++.++...+++... .+++++++++|+||||.++|.+
T Consensus        94 al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~v~i~~p~nptG~~~~~~  169 (360)
T 3hdo_A           94 VLNNLIRAFAAEGEEIGYVHPSYSYYG----TLAEVQGARVRTFGLTGDFRIAGFPERYEGKVFFLTTPNAPLGPSFPLE  169 (360)
T ss_dssp             HHHHHHHHHCCTTCEEEEESSSCTHHH----HHHHHHTCEEEEECBCTTSSBTTCCSSBCSSEEEEESSCTTTCCCCCHH
T ss_pred             HHHHHHHHHhCCCCEEEEcCCChHHHH----HHHHHCCCEEEEeeCCCCCCHHHHHhhcCCCEEEEeCCCCCCCCCcCHH
Confidence            45 455567899999999999999887    55677899999999853222222222 2467999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCccCCC----CcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCC
Q 021783           81 KIAEMAHAHGALLLVDNSIMSP----VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL  156 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~----~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~  156 (307)
                      ++.++|+++|+++|+|++|+..    ........+.+++++|+||++ |.+|+++|+++++ +.+.+.+.....  ....
T Consensus       170 ~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~-~~~~~~~~~~~~--~~~~  245 (360)
T 3hdo_A          170 YIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSY-SLAGMRIGLAIAR-PEVIAALDKIRD--HYNL  245 (360)
T ss_dssp             HHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTT-SCTTSCCEEEECC-HHHHHHHHHHSC--SCCS
T ss_pred             HHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhh-cCCccceeeEeeC-HHHHHHHHHhCC--CCCC
Confidence            9999999999999999999842    111222346789999999999 6678899999986 445554443332  2344


Q ss_pred             ChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHH
Q 021783          157 APFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALS  233 (307)
Q Consensus       157 ~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (307)
                      +...+..+...++.   +....+...++.+.+.+.+++. ++ .+ .                +..++++++.+++.+ .
T Consensus       246 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~-~~-~----------------~~~~~~~~~~~~~~~-~  305 (360)
T 3hdo_A          246 DRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI-GY-DV-I----------------PSQGNYLFATPPDRD-G  305 (360)
T ss_dssp             CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TC-EE-C----------------CCSSSEEEEECTTCC-H
T ss_pred             CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CC-EE-c----------------CCCccEEEEECCCCC-H
Confidence            55555555555543   3445556666777777777654 22 11 1                123667778776543 6


Q ss_pred             HHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHh
Q 021783          234 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALR  303 (307)
Q Consensus       234 ~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~  303 (307)
                      ..+.+.|.++||.++.|..      +                 ..++++|||++. ++++++++.|++.-+
T Consensus       306 ~~l~~~l~~~gi~v~~~~~------~-----------------~~~~~iRis~~~~~e~~~l~~al~~~~~  353 (360)
T 3hdo_A          306 KRVYDGLYARKVLVRHFSD------P-----------------LLAHGMRISIGTREEMEQTLAALKEIGE  353 (360)
T ss_dssp             HHHHHHHHHTTEECBCCCS------T-----------------TTTTSEEEECCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCEEEEECCC------C-----------------CCCCEEEEEcCCHHHHHHHHHHHHHHhc
Confidence            7788888889999887553      0                 124679999985 567777777766544

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.94  E-value=2.4e-26  Score=201.75  Aligned_cols=259  Identities=15%  Similarity=0.176  Sum_probs=177.6

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcCC-CceEEE-EeCCCCCccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGP-WTKLVW-VESPTNPRQQ   75 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~~-~~~~v~-~~~~~n~tG~   75 (307)
                      |+ .++.+++++||+|+++.|+|+++.    ..++..|++++.++.+    |++++++.+++ ++++|+ +++|+||||.
T Consensus       103 al~~~~~~~~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~nptG~  178 (397)
T 2zyj_A          103 ALDLVGKVFLDEGSPVLLEAPSYMGAI----QAFRLQGPRFLTVPAGEEGPDLDALEEVLKRERPRFLYLIPSFQNPTGG  178 (397)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHTTCCEEEEEEEETTEECHHHHHHHHHHCCCSCEEECCBSCTTTCC
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCcHHHH----HHHHHcCCEEEecCcCCCCCCHHHHHHHHhhcCCeEEEECCCCcCCCCC
Confidence            45 355567899999999999998887    5566789999988863    88999999874 788874 6899999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-----CccCC------CccEEEeccccccccCCCceeEEEEEcChhH
Q 021783           76 ICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLEL------GADIVMHSATKFIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        76 ~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~~~~------~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~  141 (307)
                      +++   +++|.++|++||+++|+|++|+.+...     ....+      +.+++++|+||++ + +|+|+|+++++++ +
T Consensus       179 ~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~-~G~r~G~~~~~~~-~  255 (397)
T 2zyj_A          179 LTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVL-S-PGLRVAFAVAHPE-A  255 (397)
T ss_dssp             BCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTT-C-GGGCCEEEECCHH-H
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccc-c-ccceeEEEecCHH-H
Confidence            987   559999999999999999999864321     22222      4559999999999 5 7889999999844 5


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHhhcccc-----HHHHHHHHHHHHHHHHHHHhcC-C-CccEEecCCCCCCCchHHHhh
Q 021783          142 AKELYFLQNAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASH-P-RVKKVNYAGLPEHPGHELHYS  214 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~-~-~~~~~~~~~l~~~~~~~~~~~  214 (307)
                      .+.+...........+...+..+...++.     +....+.+.++.+.+.+.|++. + ++ .+..              
T Consensus       256 ~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~-~~~~--------------  320 (397)
T 2zyj_A          256 LQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEV-RYTR--------------  320 (397)
T ss_dssp             HHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS-EECC--------------
T ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCe-EEcc--------------
Confidence            55454433332222344455554444442     2333444455666666666542 2 12 1111              


Q ss_pred             hccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc---CCh
Q 021783          215 QAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDV  291 (307)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~  291 (307)
                        ...+.++++.++...+..++.+.|..+||.++.|..|..                   .+..++++|||++.   +++
T Consensus       321 --~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~-------------------~~~~~~~iRis~~~~~~~~i  379 (397)
T 2zyj_A          321 --PKGGMFVWMELPKGLSAEGLFRRALEENVAFVPGGPFFA-------------------NGGGENTLRLSYATLDREGI  379 (397)
T ss_dssp             --CSBSSEEEEECSTTCCHHHHHHHHHHTTEEEEESGGGCT-------------------TSCCTTEEEEECSSSCHHHH
T ss_pred             --CCccEEEEEEcCCCCCHHHHHHHHHHCCCEEechHHhcC-------------------CCCCCCeEEEEcCCCCHHHH
Confidence              113567778875432367788888888999988765321                   01135789999986   567


Q ss_pred             HHHHHHHHHHHhc
Q 021783          292 NDLISDLDKALRT  304 (307)
Q Consensus       292 ~~~i~~l~~~l~~  304 (307)
                      ++.++.|.+++++
T Consensus       380 ~~~~~~l~~~l~~  392 (397)
T 2zyj_A          380 AEGVRRLGRALKG  392 (397)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7778888777654

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.94  E-value=1.1e-25  Score=202.89  Aligned_cols=259  Identities=12%  Similarity=0.061  Sum_probs=172.0

Q ss_pred             HH-HHHHHhc-CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-------CChHHHHhhcCC------CceEEEEe
Q 021783            3 AL-AAVTHLL-GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGP------WTKLVWVE   67 (307)
Q Consensus         3 al-~~~~~~~-~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~------~~~~v~~~   67 (307)
                      |+ .++.+++ ++||+|++++|+|+++.    ..++..|++++.++.       .|+++|++.+++      ++++|+++
T Consensus       169 al~~~~~~l~~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~  244 (500)
T 3tcm_A          169 GVHLMMQLLIRNEKDGILVPIPQYPLYS----ASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVI  244 (500)
T ss_dssp             HHHHHHHHHCCSTTEEEEEEESCCTHHH----HHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             HHHHHHHHHcCCCCCEEEEeCCCcHhHH----HHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEE
Confidence            45 3445566 79999999999998887    566778999999984       378999999875      78999999


Q ss_pred             CCCCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCcC------Cc----------cCCCccEEEeccccccccCCC
Q 021783           68 SPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS------RP----------LELGADIVMHSATKFIAGHSD  128 (307)
Q Consensus        68 ~~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~------~~----------~~~~~d~~~~s~~K~~~g~~g  128 (307)
                      +|+||||.+++   +++|+++|++||+++|+|++|+...+.      ..          ......++++|+||.+.|.+|
T Consensus       245 ~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G  324 (500)
T 3tcm_A          245 NPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECG  324 (500)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGG
T ss_pred             CCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCc
Confidence            99999999986   677778899999999999999864331      11          111235888999999866789


Q ss_pred             ceeEEEEEc--ChhHHHHHHHHHHhcCCCCChhhHHHHhhccc--------------cHHHHHHHHHHHHHHHHHHHhcC
Q 021783          129 VMAGVLAVK--GERLAKELYFLQNAEGSGLAPFDCWICLRGVK--------------TMALRVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       129 ~~~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------------~~~~~~~~~~~~~~~l~~~l~~~  192 (307)
                      +|+||+++.  ++.+.+.+..... .....+...+..+...++              ......+.+.++++.+.+.|++.
T Consensus       325 ~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~  403 (500)
T 3tcm_A          325 KRGGYFEITGFSAPVREQIYKIAS-VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKL  403 (500)
T ss_dssp             GCCEEEEEESCCTTHHHHHHHHHH-TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             cceEEEEEeCCCHHHHHHHHHHHh-cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999982  3445555544443 222333334443333332              22333445566666777777655


Q ss_pred             CCccEEecCCCCCCCchHHHhhhccCCCceEEE-EeCC-HH------------HHHHHHhcCCcceeecCCCCccceeec
Q 021783          193 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGS-LA------------LSKHVVETTKYFSITVSFGSVKSLISM  258 (307)
Q Consensus       193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~------------~~~~~~~~l~~~gi~v~~g~~~~~~~~  258 (307)
                      +++.              +.    ...++++.| .+.- ..            +...+.+.+.+.||.+.+|+.|..   
T Consensus       404 ~g~~--------------~~----~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~---  462 (500)
T 3tcm_A          404 EGIT--------------CN----EAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQ---  462 (500)
T ss_dssp             TTEE--------------CC----CCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCC---
T ss_pred             CCcE--------------Ee----cCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCC---
Confidence            3321              11    112344433 3321 11            111234556678999999887441   


Q ss_pred             ccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 021783          259 PCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  304 (307)
Q Consensus       259 p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  304 (307)
                                       ..+.+++|+|++.  +++++.++.|.+++++
T Consensus       463 -----------------~~g~~~iRis~~~~~e~i~~~i~~l~~~~~~  493 (500)
T 3tcm_A          463 -----------------VPGTWHFRCTILPQEDKIPAVISRFTVFHEA  493 (500)
T ss_dssp             -----------------CTTCCBEEEESCSCTTTHHHHHHHHHHHHHH
T ss_pred             -----------------CCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence                             0135679999985  6788889999888754

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.94  E-value=1.5e-25  Score=198.98  Aligned_cols=257  Identities=15%  Similarity=0.137  Sum_probs=175.8

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcc-cCCcEEEEecCC-------ChHHHHhhcCC------CceEEEEe
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP-KTGVVVKRVNTC-------DLDEVASAIGP------WTKLVWVE   67 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~-------d~~~l~~~l~~------~~~~v~~~   67 (307)
                      |+ .++.+++++||+|+++.|+|.++.    ..+. ..|++++.++.+       |++++++.+++      ++++|+++
T Consensus       123 a~~~~~~~l~~~gd~vl~~~p~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~  198 (435)
T 3piu_A          123 ANETFIFCLADPGEAVLIPTPYYPGFD----RDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVT  198 (435)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTTHH----HHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             HHHHHHHHhcCCCCeEEECCCccccHH----HHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            44 455667899999999999998887    4455 689999999874       78999998864      89999999


Q ss_pred             CCCCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-----Cc----cC---------CCccEEEeccccccccC
Q 021783           68 SPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RP----LE---------LGADIVMHSATKFIAGH  126 (307)
Q Consensus        68 ~~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~----~~---------~~~d~~~~s~~K~~~g~  126 (307)
                      +|+||||.+++   +++|+++|++||+++|+|++|+.+.+.     ..    .+         .+.+++++|+||.+ |.
T Consensus       199 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~-g~  277 (435)
T 3piu_A          199 NPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDL-GL  277 (435)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSS-CC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeeccc-CC
Confidence            99999999986   588899999999999999999753221     11    11         34459999999999 66


Q ss_pred             CCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhcccc-------HHHHHHHHHHHHHHHHHHHhcCCCccEEe
Q 021783          127 SDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-------MALRVEKQQDNAQKIAEFLASHPRVKKVN  199 (307)
Q Consensus       127 ~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  199 (307)
                      +|+|+|+++++++.+.+.+.......  ..+...+..+...++.       +....+.+.++.+.+.+.+++. ++ .+ 
T Consensus       278 ~G~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~-  352 (435)
T 3piu_A          278 PGFRVGAIYSNDDMVVAAATKMSSFG--LVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GI-SC-  352 (435)
T ss_dssp             GGGCEEEEEESCHHHHHHHHHHGGGS--CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TC-EE-
T ss_pred             CceeEEEEEeCCHHHHHHHHHHhhcC--CCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-cc-
Confidence            78999999997776666555443322  2233333333333322       1233444455556666666643 11 11 


Q ss_pred             cCCCCCCCchHHHhhhccCCCceEEEEeCCH------HHHHHHHhcCCcc-eeecCCCCccceeecccccCCCCCcHHHH
Q 021783          200 YAGLPEHPGHELHYSQAKGAGSVLSFLTGSL------ALSKHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVEVR  272 (307)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~-gi~v~~g~~~~~~~~p~~~~~~~~~~~~~  272 (307)
                      .+               ...+.++++.++..      +...++.+.+..+ ||.+++|..|..                 
T Consensus       353 ~~---------------~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-----------------  400 (435)
T 3piu_A          353 LN---------------GNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHC-----------------  400 (435)
T ss_dssp             CC---------------CCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC-----------------
T ss_pred             cC---------------CCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCC-----------------
Confidence            00               11246777777542      1356677776545 999888765331                 


Q ss_pred             HhcCCCCCeEEEEecc---CChHHHHHHHHHHHhcC
Q 021783          273 QARGLTEDLVRISVGI---EDVNDLISDLDKALRTG  305 (307)
Q Consensus       273 ~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~~  305 (307)
                          ..++++||+++.   +++++.++.|.++++++
T Consensus       401 ----~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~~  432 (435)
T 3piu_A          401 ----TEPGWFRVCFANLPERTLDLAMQRLKAFVGEY  432 (435)
T ss_dssp             ----SSTTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             ----CCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHH
Confidence                136789999975   67888888888877653

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.94  E-value=8e-26  Score=200.48  Aligned_cols=254  Identities=13%  Similarity=0.108  Sum_probs=178.2

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhccc-CCcEEEEecCC------ChHHHHhhcCC---CceEEEEeCCCC
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK-TGVVVKRVNTC------DLDEVASAIGP---WTKLVWVESPTN   71 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~------d~~~l~~~l~~---~~~~v~~~~~~n   71 (307)
                      |+ .++.+++++||+|++++|+|+++.    ..++. .|++++.++.+      |++++++.+++   +++++++++|+|
T Consensus       125 al~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~n  200 (430)
T 2x5f_A          125 GLSLVGDLFVNQDDTILLPEHNWGNYK----LVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNN  200 (430)
T ss_dssp             HHHHHHHHHCCTTCEEEEESSCCTHHH----HHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCT
T ss_pred             HHHHHHHHHhCCCCEEEEcCCcCccHH----HHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCC
Confidence            45 455567899999999999999887    55677 89999998862      68899998875   889999999999


Q ss_pred             Ccccccc---HHHHHHHHHH-----cCCEEEEeCccCCCCcC-----Ccc----C-CCc---cEEEeccccccccCCCce
Q 021783           72 PRQQICD---IRKIAEMAHA-----HGALLLVDNSIMSPVLS-----RPL----E-LGA---DIVMHSATKFIAGHSDVM  130 (307)
Q Consensus        72 ~tG~~~~---~~~l~~~~~~-----~~~~li~D~a~~~~~~~-----~~~----~-~~~---d~~~~s~~K~~~g~~g~~  130 (307)
                      |||.+++   +++|.++|++     ||+++|+|++|+.....     ...    . .+.   +++++|+||++ |.+|+|
T Consensus       201 ptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r  279 (430)
T 2x5f_A          201 PTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEF-FAWGFR  279 (430)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHT-TCGGGC
T ss_pred             CCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCC-CCCCCC
Confidence            9999998   8999999999     99999999999753321     111    2 356   89999999999 667899


Q ss_pred             eEEEEE---cChhHHHHHHHHHHh----cCCCCChhhHHHHhhccc-c---HHH---HHHHHHHHHHHHHHHHhcCC-Cc
Q 021783          131 AGVLAV---KGERLAKELYFLQNA----EGSGLAPFDCWICLRGVK-T---MAL---RVEKQQDNAQKIAEFLASHP-RV  195 (307)
Q Consensus       131 ~G~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~-~---~~~---~~~~~~~~~~~l~~~l~~~~-~~  195 (307)
                      +|++++   + +.+.+.+......    .....+...+..+...++ .   .+.   ..+.+.++.+.+.+.|+++. ..
T Consensus       280 iG~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  358 (430)
T 2x5f_A          280 VGFMTFGTSD-QTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHS  358 (430)
T ss_dssp             CEEEEEBCCC-HHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT
T ss_pred             eEEEEEecCC-HHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            999999   5 4455555444333    334455566666655555 3   222   34444555566666665220 00


Q ss_pred             cEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCc-ceeecCCCCccceeecccccCCCCCcHHHHHh
Q 021783          196 KKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHASIPVEVRQA  274 (307)
Q Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~  274 (307)
                       .+..           .  . ...+.++++.+++. +...+.+.|.. +||.+++|.                       
T Consensus       359 -g~~~-----------~--~-~~~g~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~-----------------------  399 (430)
T 2x5f_A          359 -HWQA-----------Y--D-FNSGYFMAIKVHDV-DPEALRKHLIDKYSIGVIALN-----------------------  399 (430)
T ss_dssp             -TEEE-----------C--C-CCBSSEEEEEESSS-CHHHHHHHHHHHHCEECEECS-----------------------
T ss_pred             -Ccee-----------e--C-CCceEEEEeCCCCC-CHHHHHHHHHHhCCEEEecCC-----------------------
Confidence             0100           0  0 11234577777633 36678888876 899887651                       


Q ss_pred             cCCCCCeEEEEec---cCChHHHHHHHHHHHhcC
Q 021783          275 RGLTEDLVRISVG---IEDVNDLISDLDKALRTG  305 (307)
Q Consensus       275 ~~~~~~~iRis~~---~~~~~~~i~~l~~~l~~~  305 (307)
                          ++++|||++   .+++++.++.|.++++++
T Consensus       400 ----~~~iRis~~~~~~e~i~~~~~~l~~~l~~~  429 (430)
T 2x5f_A          400 ----ATDIRIAFSCVEKDDIPHVFDSIAKAIDDL  429 (430)
T ss_dssp             ----SSEEEEEGGGSCGGGHHHHHHHHHHHHHHH
T ss_pred             ----CCeEEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence                456999998   377899999999888653

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.94  E-value=8.1e-26  Score=199.17  Aligned_cols=253  Identities=15%  Similarity=0.104  Sum_probs=178.4

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCC-CceEEEEeCCCCCccccccHHHHH
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIA   83 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~~~~l~   83 (307)
                      .++.+++++||+|++++|.|+++.    ..++..|++++.++..|++++++.+.+ ++++|++++++||||.+.++++|.
T Consensus       134 ~~l~~~~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~~~~~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~  209 (409)
T 3kki_A          134 GLLQTICQPNTNVYIDFFAHMSLW----EGARYANAQAHPFMHNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELV  209 (409)
T ss_dssp             HHHHHHCCTTCEEEEETTSCHHHH----HHHHHTTCEEEEECTTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHH
T ss_pred             HHHHHhcCCCCEEEECCCcCHHHH----HHHHHcCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHH
Confidence            566778899999999999998887    455677999999999999999999974 589999999999999999999999


Q ss_pred             HHHHHcCCEEEEeCccCCCCcC-C--------ccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHH-hcC
Q 021783           84 EMAHAHGALLLVDNSIMSPVLS-R--------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-AEG  153 (307)
Q Consensus        84 ~~~~~~~~~li~D~a~~~~~~~-~--------~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~-~~~  153 (307)
                      ++|++||+++|+|++|+.+.+. .        ....+.|++++|+||++++ +   +|+++++++........... ..+
T Consensus       210 ~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~-~---gg~v~~~~~~~~~~~~~~~~~~~~  285 (409)
T 3kki_A          210 NISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAY-R---AGAIWCNNEVNRCVPFISYPAIFS  285 (409)
T ss_dssp             HHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCS-S---CEEEEESSSGGGTHHHHCHHHHHS
T ss_pred             HHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCC-C---ceEEEECHHHHHHHHHhCcCcccc
Confidence            9999999999999999865431 0        1112578999999999953 3   69999887644332221111 122


Q ss_pred             CCCChhhHHHHhhccccH---HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH
Q 021783          154 SGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  230 (307)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (307)
                      ...++.....+..+++.+   ....++..++.+.+.+.|++..         +. .          .+.+.++++.+++.
T Consensus       286 ~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~-~----------~~~~~~~~~~~~~~  345 (409)
T 3kki_A          286 STLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLG---------LT-I----------RSESQIIGLETGDE  345 (409)
T ss_dssp             BCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTT---------CC-C----------CCSSSEEEEEEESH
T ss_pred             CCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC---------Cc-c----------CCCCCEEEEEeCCH
Confidence            234444444444444433   3334455566666777776541         10 0          12467888888766


Q ss_pred             HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          231 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       231 ~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                      .....+.+.|.++||.++.+..      |.              ....++++|++++.    ++++++++.|.++++..
T Consensus       346 ~~~~~~~~~L~~~Gv~v~~~~~------~~--------------~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~  404 (409)
T 3kki_A          346 RNTEKVRDYLESNGVFGSVFCR------PA--------------TSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYG  404 (409)
T ss_dssp             HHHHHHHHHHHHTTEECEEECT------TS--------------SCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHCCceEeeeCC------CC--------------cCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhcC
Confidence            5677888888888997765322      10              11235789999974    66777777777777653

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.94  E-value=4.2e-26  Score=195.71  Aligned_cols=244  Identities=15%  Similarity=0.160  Sum_probs=169.3

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccc
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~   77 (307)
                      ++.++...+ +||+|++++|+|+++.    ..++..|++++.++.+     |++++++.  .+++++++++|+||||.++
T Consensus        80 ~l~~~~~~~-~gd~vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~  152 (337)
T 3p1t_A           80 CFDRISAEF-SSMRFVTAWPGFDGYR----ARIAVSGLRHFEIGLTDDLLLDPNDLAQV--SRDDCVVLANPSNPTGQAL  152 (337)
T ss_dssp             HHHHHHHHS-TTSEEEEESSSCSHHH----HHHTTSCCEEEEECBCTTSSBCHHHHTTC--CTTEEEEEESSCTTTCCCC
T ss_pred             HHHHHHHhc-CCCeEEEeCCCcHHHH----HHHHHcCCEEEEecCCCCCCCCHHHHHhh--cCCCEEEEeCCCCCCCCCC
Confidence            454444444 9999999999999887    6677889999999864     78888776  4689999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCccCCCC--cC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCC
Q 021783           78 DIRKIAEMAHAHGALLLVDNSIMSPV--LS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS  154 (307)
Q Consensus        78 ~~~~l~~~~~~~~~~li~D~a~~~~~--~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~  154 (307)
                      |.+++.++|+++++ +|+|++|+...  .. .....+.+++++|+||++ |++|+|+|+++++++ +.+.+....  ...
T Consensus       153 ~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~~~~~~~-~~~~l~~~~--~~~  227 (337)
T 3p1t_A          153 SAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSY-GLAGLRLGALFGPSE-LIAAMKRKQ--WFC  227 (337)
T ss_dssp             CHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTT-CCTTTCCEEEECCHH-HHHHHHTTS--CTT
T ss_pred             CHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEeeCchhc-cCcchheEEEEeCHH-HHHHHHhhc--CCC
Confidence            99999999999997 56699997321  11 223346789999999999 678999999998755 433333221  122


Q ss_pred             CCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHH
Q 021783          155 GLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA  231 (307)
Q Consensus       155 ~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (307)
                      ..+...+..+...++.   +....++..++.+.+.+.|++. ++        .-.          ...++++++...+. 
T Consensus       228 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~--------~~~----------~~~~~~~~~~~~~~-  287 (337)
T 3p1t_A          228 NVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL-GY--------RVA----------SSEANFVLVENAAG-  287 (337)
T ss_dssp             CSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TC--------CBC----------CCSSSEEEEECTTT-
T ss_pred             CCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-cC--------EEC----------CCCCeEEEEEcCCH-
Confidence            3344444444444443   3445555666666777777654 11        101          11356777777543 


Q ss_pred             HHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHh
Q 021783          232 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALR  303 (307)
Q Consensus       232 ~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~  303 (307)
                        ..+.+.|..+||.++.|..|.                       .++++|||++. ++++++++.|++.++
T Consensus       288 --~~~~~~l~~~gi~v~~g~~~~-----------------------~~~~iRis~~~~~~~~~l~~al~~~~~  335 (337)
T 3p1t_A          288 --ERTLRFLRERGIQVKDAGQFG-----------------------LHHHIRISIGREEDNDRLLAALAEYSD  335 (337)
T ss_dssp             --HHHHHHHHHTTEECEEGGGGT-----------------------CCSEEEEECCCHHHHHHHHHHHHHHTC
T ss_pred             --HHHHHHHHHCCeEEEECccCC-----------------------CCCeEEEecCCHHHHHHHHHHHHHHhh
Confidence              345566677899998877632                       14679999986 577777777776654

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.94  E-value=8.6e-27  Score=204.18  Aligned_cols=257  Identities=14%  Similarity=0.151  Sum_probs=175.5

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-----CChHHHHhhcCC-CceEEEEeCCCCCcccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGP-WTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~   78 (307)
                      .++.+++++||+|++++++|+++.  +...++..|++++.++.     .|++++++.+++ ++++|++++++||||.+.|
T Consensus        85 ~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~  162 (393)
T 2huf_A           85 ATLCNLLEDGDVILIGHTGHWGDR--SADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQG  162 (393)
T ss_dssp             HHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred             HHHHHHhCCCCEEEEECCCcchHH--HHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCC
Confidence            455557899999999999997743  33455678999999986     389999999987 8999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH----HHh--
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL----QNA--  151 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~----~~~--  151 (307)
                      +++|.++|++||+++|+|++|+.+..+ +...+++|++++|+||+++|++|  .|+++++++ +.+.+...    ..+  
T Consensus       163 l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g~~G--~G~~~~~~~-~~~~~~~~~~~~~~~~~  239 (393)
T 2huf_A          163 LEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPG--ITPVSFSHR-AVERYKRRNTKVKVYYW  239 (393)
T ss_dssp             CTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCCCSS--CEEEEECHH-HHHHHHTCSSCCSCGGG
T ss_pred             HHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEECCCcccccCCC--eEEEEECHH-HHHHHhhcCCCCceEEE
Confidence            999999999999999999999877654 44456899999999999878888  599999754 44433321    000  


Q ss_pred             --------cC---------CCCChhhHHHHhhcccc-----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCch
Q 021783          152 --------EG---------SGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGH  209 (307)
Q Consensus       152 --------~~---------~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~  209 (307)
                              .+         .+.+.........+++.     +....++..++.+.+.+.|++. ++        .-.   
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~--------~~~---  307 (393)
T 2huf_A          240 DMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA-GF--------ELY---  307 (393)
T ss_dssp             CHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC--------CBS---
T ss_pred             chHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CC--------eec---
Confidence                    00         12222222222223322     3334555666667777777654 21        000   


Q ss_pred             HHHhhhccCCCceEEEEeCCHHHHHHHHhcCCc-ceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEe-c
Q 021783          210 ELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV-G  287 (307)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~-~  287 (307)
                         .+.....+.++++.++......++.+.|.. .||.++.|..+.                       .++++||++ +
T Consensus       308 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~-----------------------~~~~~Ri~~~~  361 (393)
T 2huf_A          308 ---ADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPT-----------------------AGQVFRIGLMG  361 (393)
T ss_dssp             ---SCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGGG-----------------------TTTEEEEECCG
T ss_pred             ---cCccccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccc-----------------------cCCEEEEEccc
Confidence               000011244777887532236677777765 499998776421                       256799999 5


Q ss_pred             c----CChHHHHHHHHHHHhc
Q 021783          288 I----EDVNDLISDLDKALRT  304 (307)
Q Consensus       288 ~----~~~~~~i~~l~~~l~~  304 (307)
                      .    ++++++++.|.+++++
T Consensus       362 ~~~~~e~i~~~~~~l~~~~~~  382 (393)
T 2huf_A          362 QNATTERVDRVLQVFQEAVAA  382 (393)
T ss_dssp             GGCSHHHHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHHHHH
Confidence            2    4578888888887754

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.2e-25  Score=198.52  Aligned_cols=247  Identities=12%  Similarity=0.084  Sum_probs=168.2

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-----------------CChHHHHhhcCCCceEE
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----------------CDLDEVASAIGPWTKLV   64 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----------------~d~~~l~~~l~~~~~~v   64 (307)
                      |+ .++.+++++||+|++++|.|+++.    ..++..|++++.++.                 .|+++|++++++++++|
T Consensus       130 al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v  205 (447)
T 3b46_A          130 GILSCLMGLLNAGDEVIVFEPFFDQYI----PNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAV  205 (447)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTEEEE
T ss_pred             HHHHHHHHHcCCCCEEEEeCCCchhHH----HHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhccCCeEE
Confidence            44 455667899999999999999887    556778999888874                 27899999999899999


Q ss_pred             EEeCCCCCccccc---cHHHHHHHHHHcCCEEEEeCccCCCCc----CCc-----cCCCccEEEeccccccccCCCceeE
Q 021783           65 WVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVL----SRP-----LELGADIVMHSATKFIAGHSDVMAG  132 (307)
Q Consensus        65 ~~~~~~n~tG~~~---~~~~l~~~~~~~~~~li~D~a~~~~~~----~~~-----~~~~~d~~~~s~~K~~~g~~g~~~G  132 (307)
                      ++++|+||||.++   ++++|+++|++||+++|+|++|+...+    ...     ...+.+++++|+||++ +.+|+|+|
T Consensus       206 ~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~-~~~G~riG  284 (447)
T 3b46_A          206 IINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSF-AATGWRIG  284 (447)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHT-TCTTSCCE
T ss_pred             EEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhc-CCcchhhE
Confidence            9999999999997   499999999999999999999985322    111     1347899999999999 66789999


Q ss_pred             EEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhcccc------HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCC
Q 021783          133 VLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH  206 (307)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~  206 (307)
                      +++++++.+.+.+...........+...+..+...++.      +....+...++.+.+.+.|++. ++. +..      
T Consensus       285 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~------  356 (447)
T 3b46_A          285 WVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL-GLP-YTA------  356 (447)
T ss_dssp             EEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-TCC-EEC------
T ss_pred             EEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCe-ecC------
Confidence            99993355555555544434444444445444444432      2223444455556666666543 111 110      


Q ss_pred             CchHHHhhhccCCCceEEEEeCCH---------------HHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHH
Q 021783          207 PGHELHYSQAKGAGSVLSFLTGSL---------------ALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVE  270 (307)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~  270 (307)
                                ...+.++++.++..               ....++.+.+. ++||.+.+|..|...  +.          
T Consensus       357 ----------~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~--~~----------  414 (447)
T 3b46_A          357 ----------PEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIK--EH----------  414 (447)
T ss_dssp             ----------CSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCG--GG----------
T ss_pred             ----------CCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCC--Cc----------
Confidence                      11355667776531               23567777665 579999888764311  00          


Q ss_pred             HHHhcCCCCCeEEEEecc
Q 021783          271 VRQARGLTEDLVRISVGI  288 (307)
Q Consensus       271 ~~~~~~~~~~~iRis~~~  288 (307)
                          .+..++++|+|++.
T Consensus       415 ----~~~~~~~iRls~~~  428 (447)
T 3b46_A          415 ----EKAAENLLRFAVCK  428 (447)
T ss_dssp             ----GGGGTTEEEEECCS
T ss_pred             ----cCCCCCEEEEEEeC
Confidence                01125789999985

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.94  E-value=1.2e-25  Score=193.83  Aligned_cols=253  Identities=13%  Similarity=0.050  Sum_probs=173.3

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      .++.+++++||+|++++++|+++.  +...++..|++++.++.+     |++++++   +++++|++++++||||.+.|+
T Consensus        66 ~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~l  140 (352)
T 1iug_A           66 ALVKNLFAPGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDTPRPEDVAK---EGYAGLLLVHSETSTGALADL  140 (352)
T ss_dssp             HHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCTTTSCC---SSCSEEEEESEETTTTEECCH
T ss_pred             HHHHhccCCCCeEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCCCCCHHHHhc---cCCcEEEEEEecCCcceecCH
Confidence            455567899999999999998875  334556789999999873     5666665   678999999999999999999


Q ss_pred             HHHHHHHHHc--CCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHH--------HH--
Q 021783           80 RKIAEMAHAH--GALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE--------LY--  146 (307)
Q Consensus        80 ~~l~~~~~~~--~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~--------~~--  146 (307)
                      ++|.++|++|  |+++|+|++|+.+..+ +...++.|++++|+||+++++.|  .|+++++++.+...        +.  
T Consensus       141 ~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g--~G~~~~~~~~~~~~~~~~~~~~~~~~  218 (352)
T 1iug_A          141 PALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPG--LGFVALSPRALERLKPRGYYLDLARE  218 (352)
T ss_dssp             HHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSC--EEEEEECHHHHHTCCCCSSTTCHHHH
T ss_pred             HHHHHHHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccccCCCc--eeEEEECHHHHHHhhCCCceeeHHHH
Confidence            9999999999  9999999999876654 44455799999999998778777  79999986644220        11  


Q ss_pred             --HHH-HhcCCCCChhhHHHHhhccc----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCC
Q 021783          147 --FLQ-NAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  219 (307)
Q Consensus       147 --~~~-~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (307)
                        ... .....+.+.........+++    .+....++..++.+.+.+.|++. ++ .+..+               ...
T Consensus       219 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~---------------~~~  281 (352)
T 1iug_A          219 LKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG-GL-RPVPK---------------RFS  281 (352)
T ss_dssp             HHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT-TC-EESCS---------------SBC
T ss_pred             HhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC-ccccc---------------ccC
Confidence              110 11112233333322223322    23445566667777777777754 22 11111               013


Q ss_pred             CceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHH
Q 021783          220 GSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLI  295 (307)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i  295 (307)
                      ++++++.+++.....++.+.|..+||.++.|...                       ..++++|++++.    +++++++
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~-----------------------~~~~~iRi~~~~~~~~~~i~~~~  338 (352)
T 1iug_A          282 PAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQGP-----------------------LKGKVFRLSLMGAYDRYEALGVA  338 (352)
T ss_dssp             TTCEEEECCTTCCHHHHHHHHHTTTEECEECCGG-----------------------GTTTEEEECCCSSCCHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHCCEEEEeCCCc-----------------------cCCCEEEEEccccCCHHHHHHHH
Confidence            5678888763223677888888889988876520                       025679999984    5677777


Q ss_pred             HHHHHHHhc
Q 021783          296 SDLDKALRT  304 (307)
Q Consensus       296 ~~l~~~l~~  304 (307)
                      +.|.+++++
T Consensus       339 ~~l~~~~~~  347 (352)
T 1iug_A          339 GMFREVLEE  347 (352)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777776653

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.94  E-value=3.5e-26  Score=203.87  Aligned_cols=258  Identities=15%  Similarity=0.116  Sum_probs=175.8

Q ss_pred             cHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcE----------EEEecCCChHHHHhhcC--CCceEEEEeCC
Q 021783            2 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV----------VKRVNTCDLDEVASAIG--PWTKLVWVESP   69 (307)
Q Consensus         2 aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~----------~~~v~~~d~~~l~~~l~--~~~~~v~~~~~   69 (307)
                      .++.++.+++++||+|++++|+|+++.    ..++..|++          ++.++.++.+.+...+.  +++++|++++|
T Consensus       143 ~al~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p  218 (449)
T 3qgu_A          143 CDIARIQMMFGSKPTVAVQDPSYPVYV----DTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTDIIFFCSP  218 (449)
T ss_dssp             HHHHHHHHHHCSSSCEEEEESCCTHHH----HHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGCCCCSEEEEESS
T ss_pred             HHHHHHHHHhCCCCEEEEcCCCChhHH----HHHHHcCCcccccccccceeEEEecccccCCcCChhHcCCCCEEEEeCC
Confidence            355455678899999999999999888    555667777          88888764333222222  57899999999


Q ss_pred             CCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCc----C-Ccc----CCCccEEEeccccccccCCCceeEEEEEc
Q 021783           70 TNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL----S-RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVK  137 (307)
Q Consensus        70 ~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~----~-~~~----~~~~d~~~~s~~K~~~g~~g~~~G~~~~~  137 (307)
                      +||||.+++   +++|+++|++||+++|+|++|+....    + ...    ..+.+++++|+||++ |.+|+|+|+++++
T Consensus       219 ~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~  297 (449)
T 3qgu_A          219 NNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYA-GFTGVRLGWTVVP  297 (449)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGG-TCTTCCCEEEECC
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhc-CCccceeEEEecC
Confidence            999999986   88889999999999999999974221    1 111    135789999999999 6778999999998


Q ss_pred             ChhHHH-------HHHHHHHhcCCCCChhhHHHHhhcccc-----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCC
Q 021783          138 GERLAK-------ELYFLQNAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE  205 (307)
Q Consensus       138 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~  205 (307)
                      ++....       .+...........+...+..+...++.     +....+.+.++.+.+.+.|++. ++. +..     
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~-----  370 (449)
T 3qgu_A          298 KALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-GFS-VYG-----  370 (449)
T ss_dssp             TTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC-EEE-----
T ss_pred             HHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCe-eeC-----
Confidence            765431       333334333344555555555555543     3344555566667777777654 111 110     


Q ss_pred             CCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcc-eeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEE
Q 021783          206 HPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI  284 (307)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRi  284 (307)
                                 ...+.++++.+++. ...++.+.|..+ ||.+++|..|..                     ..++++||
T Consensus       371 -----------~~~~~~~~~~~~~~-~~~~~~~~l~~~~gI~v~pg~~f~~---------------------~~~~~iRi  417 (449)
T 3qgu_A          371 -----------GDDAPYIWVGFPGK-PSWDVFAEILERCNIVTTPGSGYGP---------------------AGEGFVRA  417 (449)
T ss_dssp             -----------SSSSSEEEEECTTS-CHHHHHHHHHHHHCEECEEGGGGCG---------------------GGTTEEEE
T ss_pred             -----------CCCeeEEEEECCCC-CHHHHHHHHHHHCCEEEecchHhCC---------------------CCCCeEEE
Confidence                       11356777877633 356677666554 999988876431                     12578999


Q ss_pred             Eecc--CChHHHHHHHHHHHhc
Q 021783          285 SVGI--EDVNDLISDLDKALRT  304 (307)
Q Consensus       285 s~~~--~~~~~~i~~l~~~l~~  304 (307)
                      |+..  +++++.++.|.+++++
T Consensus       418 s~~~~~e~i~~~l~~l~~~~~~  439 (449)
T 3qgu_A          418 SAFGSRENILEAVRRFKEAYGK  439 (449)
T ss_dssp             ECCSCHHHHHHHHHHHHHHHC-
T ss_pred             EecCCHHHHHHHHHHHHHHHHh
Confidence            9854  7788888888888754

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.94  E-value=1.8e-26  Score=202.23  Aligned_cols=255  Identities=17%  Similarity=0.189  Sum_probs=176.3

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcc--hHHHHhhhcccCCcEEEEecC-----CChHHHHhhcCC-CceEEEEeCCCCCc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGG--TDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGP-WTKLVWVESPTNPR   73 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~--~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~-~~~~v~~~~~~n~t   73 (307)
                      |+ .++.+++++||+|++++|+|++  +.    ..++..|++++.++.     .|++++++.+++ ++++|++++++|||
T Consensus        97 al~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~npt  172 (393)
T 1vjo_A           97 AMEATIANAVEPGDVVLIGVAGYFGNRLV----DMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETST  172 (393)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESSHHHHHHH----HHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTT
T ss_pred             HHHHHHHhccCCCCEEEEEcCChhHHHHH----HHHHHcCCceEEEecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCc
Confidence            44 4555678999999999999987  44    566778999999986     488999999987 89999999999999


Q ss_pred             cccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH----
Q 021783           74 QQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL----  148 (307)
Q Consensus        74 G~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~----  148 (307)
                      |.+.|+++|.++|+++|+++|+|++|+.+..+ .....++|++++|+||+++++.+  +|+++++++.. +.+...    
T Consensus       173 G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~~--~G~l~~~~~~~-~~~~~~~~~~  249 (393)
T 1vjo_A          173 GARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPG--ASPFTMSSRAI-EKLQRRRTKV  249 (393)
T ss_dssp             TEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSS--CEEEEECHHHH-HHHHTCSSCC
T ss_pred             ceeccHHHHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEcCcccccCCCc--eEEEEECHHHH-HHHhccCCCC
Confidence            99999999999999999999999999976654 44556889999999999976654  89999986533 333110    


Q ss_pred             HH---------------hcCC-CCChhhHHHHhhccccH-----HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCC
Q 021783          149 QN---------------AEGS-GLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP  207 (307)
Q Consensus       149 ~~---------------~~~~-~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~  207 (307)
                      ..               .... +.+...+..+..+++.+     ....++..++.+.+.+.|++. ++. +       .+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-------~~  320 (393)
T 1vjo_A          250 ANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLS-L-------HV  320 (393)
T ss_dssp             SCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-B-------SS
T ss_pred             CceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc-CCc-c-------cC
Confidence            00               0111 33444444444444432     334555666667777777654 211 0       00


Q ss_pred             chHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcc-eeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEe
Q 021783          208 GHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  286 (307)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~  286 (307)
                            +.....+.++++.++.......+.+.|..+ ||.++.|..+.                       .++++|||+
T Consensus       321 ------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-----------------------~~~~iRis~  371 (393)
T 1vjo_A          321 ------EKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGEL-----------------------AGKVWRVGL  371 (393)
T ss_dssp             ------CGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGG-----------------------TTTEEEEEC
T ss_pred             ------CccccCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCcccc-----------------------CCCEEEEeC
Confidence                  000012467788775333367788888777 99998876421                       256799994


Q ss_pred             -cc----CChHHHHHHHHHHH
Q 021783          287 -GI----EDVNDLISDLDKAL  302 (307)
Q Consensus       287 -~~----~~~~~~i~~l~~~l  302 (307)
                       +.    ++++++++.|.+++
T Consensus       372 ~~~~~~~~~i~~~~~~l~~~l  392 (393)
T 1vjo_A          372 MGFNSRKESVDQLIPALEQVL  392 (393)
T ss_dssp             CGGGCSHHHHHHHHHHHHHHH
T ss_pred             CccCChHHHHHHHHHHHHHHh
Confidence             43    24667777776665

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.94  E-value=5e-26  Score=198.19  Aligned_cols=256  Identities=12%  Similarity=0.064  Sum_probs=171.2

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCcccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQI   76 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~   76 (307)
                      |+ .++.+++++||+|+++++.|.+..  +...+...|++++.++.+     |++++++.++++++++++++++||||.+
T Consensus        83 al~~~~~~~~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~  160 (376)
T 3f0h_A           83 SMEAVVMNCFTKKDKVLVIDGGSFGHR--FVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVL  160 (376)
T ss_dssp             HHHHHHHHHCCTTCCEEEEESSHHHHH--HHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEETTTTEE
T ss_pred             HHHHHHHhccCCCCeEEEEeCChhhHH--HHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhccCceEEEEecccCCccee
Confidence            44 455667899999999998776643  224566779998888763     8899999888899999999999999999


Q ss_pred             ccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH-------
Q 021783           77 CDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-------  148 (307)
Q Consensus        77 ~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~-------  148 (307)
                      .|+++|.++|++||+++|+|++|+.+..+ +...+++|++++|+||++++++|  +|+++++++.. +.+...       
T Consensus       161 ~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G--~g~~~~~~~~~-~~~~~~~~~~~~~  237 (376)
T 3f0h_A          161 YDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPG--ISVIVLAPRGV-ERVEKSKVRTMYF  237 (376)
T ss_dssp             CCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSS--CEEEEECHHHH-HHHHTCCCCCSTT
T ss_pred             cCHHHHHHHHHHcCCEEEEEcCccccCccccccccCccEEEecCcccccCCCc--eEEEEECHHHH-HHhhcCCCCceee
Confidence            99999999999999999999999987655 45556899999999999976788  78888876543 333210       


Q ss_pred             ------HHh----cCCCCChhhHHHHhhcccc------HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHH
Q 021783          149 ------QNA----EGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  212 (307)
Q Consensus       149 ------~~~----~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~  212 (307)
                            ...    ...+.+.........+++.      ++...++..+..+.+.+.+++.+    +..           .
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~----~~~-----------~  302 (376)
T 3f0h_A          238 DLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLP----FEL-----------V  302 (376)
T ss_dssp             CHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSS----EEE-----------C
T ss_pred             cHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC----Ccc-----------C
Confidence                  000    0112222221223333332      22333344444455555554331    111           0


Q ss_pred             hhhccCCCceEEEEeCCHHHHHHHHhcCCcc-eeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc---
Q 021783          213 YSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---  288 (307)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---  288 (307)
                      .+  .....++.+...+.+ ..++.+.|.++ ||.++.|..                       ...++++|+|++.   
T Consensus       303 ~~--~~~~~~~~~~~~~~~-~~~l~~~l~~~~gi~v~~g~~-----------------------~~~~~~lRis~~~~~t  356 (376)
T 3f0h_A          303 SE--SPANGVTSVHPTTAN-AYDIFLKLKDEYGIWICPNGG-----------------------EMKDTIFRVGHIGALT  356 (376)
T ss_dssp             CS--SBBTTEEEEEESSSC-HHHHHHHHHHHSSEECEECCG-----------------------GGTTTCEEEECCSSCC
T ss_pred             cc--ccCceEEEEeCCCCC-HHHHHHHHHHhCCEEEecCcc-----------------------ccCCCEEEEecCCCCC
Confidence            00  112345555554433 67788888777 998887631                       0125679999964   


Q ss_pred             -CChHHHHHHHHHHHhc
Q 021783          289 -EDVNDLISDLDKALRT  304 (307)
Q Consensus       289 -~~~~~~i~~l~~~l~~  304 (307)
                       ++++++++.|.+++++
T Consensus       357 ~e~i~~~~~~l~~~l~~  373 (376)
T 3f0h_A          357 HEDNTTLVNAFKDLQKR  373 (376)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence             6778888888887764

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.94  E-value=2.4e-25  Score=200.53  Aligned_cols=259  Identities=15%  Similarity=0.096  Sum_probs=174.2

Q ss_pred             HH-HHHHHhcCCCC----eEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCC-----CceEEE
Q 021783            3 AL-AAVTHLLGTGE----EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGP-----WTKLVW   65 (307)
Q Consensus         3 al-~~~~~~~~~gd----~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~-----~~~~v~   65 (307)
                      |+ .++..++++||    +|+++.|+|+.+.    ..++..|++++.++.+       |+++|++.+++     ++++|+
T Consensus       165 ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~----~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~  240 (498)
T 3ihj_A          165 GISTILKILVSGGGKSRTGVMIPIPQYPLYS----AVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLC  240 (498)
T ss_dssp             HHHHHHHHHCCCCGGGSEEEEEEESCCTHHH----HHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEE
T ss_pred             HHHHHHHHHcCCCCCCCCEEEEeCCCchhHH----HHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEE
Confidence            45 34455778875    9999999999887    5567789999999875       88999999874     689999


Q ss_pred             EeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCcCC------ccC-----------CCccEEEecccccccc
Q 021783           66 VESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR------PLE-----------LGADIVMHSATKFIAG  125 (307)
Q Consensus        66 ~~~~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~------~~~-----------~~~d~~~~s~~K~~~g  125 (307)
                      +++|+||||.+++   +++|+++|++||+++|+|++|+...+..      ...           ....++++|+||.++|
T Consensus       241 l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G  320 (498)
T 3ihj_A          241 IINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMG  320 (498)
T ss_dssp             EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTC
T ss_pred             EECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEecccccccc
Confidence            9999999999986   7789999999999999999998644321      111           0124789999999977


Q ss_pred             CCCceeEEEEE--cChhHHHHHHHHHHhcCCCCChhhHHHHhhccc--------------cHHHHHHHHHHHHHHHHHHH
Q 021783          126 HSDVMAGVLAV--KGERLAKELYFLQNAEGSGLAPFDCWICLRGVK--------------TMALRVEKQQDNAQKIAEFL  189 (307)
Q Consensus       126 ~~g~~~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------------~~~~~~~~~~~~~~~l~~~l  189 (307)
                      .+|+|+||+++  .++.+.+.+...... ....+...+..+...++              ......+.+.++++.+.+.|
T Consensus       321 ~~G~R~G~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L  399 (498)
T 3ihj_A          321 ECGYRGGYMEVINLHPEIKGQLVKLLSV-RLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLF  399 (498)
T ss_dssp             CSSSCCEEEEEESCCHHHHHHHHHHHHH-SCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccceEEEEEecCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999985  456666666555442 22333344444433332              12233455667777777777


Q ss_pred             hcCCCccEEecCCCCCCCchHHHhhhccCCCceEEE-EeCC------------HHHHHH-HHhcCCcceeecCCCCccce
Q 021783          190 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGS------------LALSKH-VVETTKYFSITVSFGSVKSL  255 (307)
Q Consensus       190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~------------~~~~~~-~~~~l~~~gi~v~~g~~~~~  255 (307)
                      ++.+++.   ..               ...++++.| .+..            .+.... +.+.+.+.||.+.+|..|..
T Consensus       400 ~~~~g~~---~~---------------~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~  461 (498)
T 3ihj_A          400 NQVPGIH---CN---------------PLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQ  461 (498)
T ss_dssp             HTSTTEE---CC---------------CCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCC
T ss_pred             hcCCCcE---ec---------------CCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCC
Confidence            7654321   10               112444443 4431            111122 35556678999998887431


Q ss_pred             eecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 021783          256 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  304 (307)
Q Consensus       256 ~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  304 (307)
                      .                    .+++++|+|++.  +++++.++.|.+++++
T Consensus       462 ~--------------------~~~~~~Ris~~~~~e~l~~~i~~L~~~~~~  492 (498)
T 3ihj_A          462 R--------------------EGTYHFRMTILPPVEKLKTVLQKVKDFHIN  492 (498)
T ss_dssp             C--------------------TTCCBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             C--------------------CCCCEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence            0                    135679999964  5777888888877654

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.94  E-value=3.2e-26  Score=199.29  Aligned_cols=274  Identities=17%  Similarity=0.141  Sum_probs=183.4

Q ss_pred             HH-HHHHHh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.++ +++||+|+++.++|+++.    ..++..|++++.++.+      |++++++.+++++++|+   ++||||
T Consensus        63 al~~~l~~l~~~~gd~Vi~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~---~~n~~G  135 (373)
T 3frk_A           63 ALHLILKGYDIGFGDEVIVPSNTFIATA----LAVSYTGAKPIFVEPDIRTYNIDPSLIESAITEKTKAII---AVHLYG  135 (373)
T ss_dssp             HHHHHHHHTTCCTTCEEEEETTSCTHHH----HHHHHHSCEEEEECEETTTTEECGGGTGGGCCTTEEEEE---EECCTT
T ss_pred             HHHHHHHHcCCCCcCEEEECCCCcHHHH----HHHHHcCCEEEEEeccccccCcCHHHHHHhcCCCCeEEE---EECCCc
Confidence            44 455666 899999999999999988    4466779999999875      89999999998999888   677999


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCccCCCCcCCccCCC--ccEEEeccc--cccccCCCceeEEEEEcChhHHHHHHHHHH
Q 021783           75 QICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSAT--KFIAGHSDVMAGVLAVKGERLAKELYFLQN  150 (307)
Q Consensus        75 ~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~d~~~~s~~--K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~  150 (307)
                      ...|+++|.++|+++|+++|+|++|+.|...+....+  .|++++||+  |+++++..  +|+++.+++.+.+.+.....
T Consensus       136 ~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~l~~~g~--gg~~~~~~~~~~~~~~~~~~  213 (373)
T 3frk_A          136 QPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKVGSLGDAAGFSFYPAKNLGSLGD--GGAVVTNDKDLAEKIKALSN  213 (373)
T ss_dssp             CCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSS--CEEEEESCHHHHHHHHHHHB
T ss_pred             CcccHHHHHHHHHHcCCEEEEECCcccCCEECCEeccccccEEEEeCcCCCccCccce--eEEEEeCCHHHHHHHHHHHh
Confidence            9999999999999999999999999987755444445  799999976  99954233  89999987767665555443


Q ss_pred             hcC------------CCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          151 AEG------------SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       151 ~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      ...            ..+....+.+....++.++...++..++.+.+.+.++..+ +   ..+....         ....
T Consensus       214 ~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~---~~~~~~~---------~~~~  280 (373)
T 3frk_A          214 YGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPN-V---IIPVEAD---------YAKH  280 (373)
T ss_dssp             TTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT-E---ECCCCCT---------TEEC
T ss_pred             cCcccCCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-e---EeccCCC---------CCce
Confidence            211            1234455555555555555555566666666666665443 1   1121100         0011


Q ss_pred             CCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCC----CCCcHHHHHhcCCCCCeEEEEeccCChHHH
Q 021783          219 AGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH----ASIPVEVRQARGLTEDLVRISVGIEDVNDL  294 (307)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~----~~~~~~~~~~~~~~~~~iRis~~~~~~~~~  294 (307)
                      ....+.+...   +...+.+.|..+||.++.+......+.|.....    ..++.....    .++.+|+|++....++.
T Consensus       281 ~~~~~~~~~~---~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~lrl~~~~~~t~~d  353 (373)
T 3frk_A          281 VWYTFVIRSE---KRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKI----ANEILSIPIWYGMKNEE  353 (373)
T ss_dssp             CCSSEEEEES---SHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHH----HHHEEEECCCTTCCHHH
T ss_pred             eeEEEEEEeC---CHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHH----HhCEEEccCCCCCCHHH
Confidence            1123344443   366788888888999987653222333322110    111111111    12579999999888888


Q ss_pred             HHHHHHHHhcC
Q 021783          295 ISDLDKALRTG  305 (307)
Q Consensus       295 i~~l~~~l~~~  305 (307)
                      ++.+.+++++.
T Consensus       354 i~~~~~~l~~~  364 (373)
T 3frk_A          354 IEYVIDKINAW  364 (373)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHH
Confidence            88888888765

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.94  E-value=1.5e-25  Score=198.64  Aligned_cols=251  Identities=15%  Similarity=0.104  Sum_probs=171.8

Q ss_pred             CCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcC-CCceEEEEe-CCCCCccccccHH---HHHH
Q 021783           14 GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIG-PWTKLVWVE-SPTNPRQQICDIR---KIAE   84 (307)
Q Consensus        14 gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~-~~~~~v~~~-~~~n~tG~~~~~~---~l~~   84 (307)
                      ||+|++++|+|+++.    ..++..|++++.+|.+    |+++++++++ +++++|+++ +++||||.+++.+   +|++
T Consensus       133 gd~V~v~~p~y~~~~----~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~  208 (427)
T 3ppl_A          133 TVKWICPVPGYDRHF----SITERFGFEMISVPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSA  208 (427)
T ss_dssp             CCEEEEEESCCHHHH----HHHHHTTCEEEEEEEETTEECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHH
T ss_pred             CCEEEEcCCCcHHHH----HHHHHcCCEEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHH
Confidence            999999999999887    5667789999999874    8999999995 789999876 8999999999866   8888


Q ss_pred             HH-HHcCCEEEEeCccCCCCcC-------Cc-------cCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           85 MA-HAHGALLLVDNSIMSPVLS-------RP-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        85 ~~-~~~~~~li~D~a~~~~~~~-------~~-------~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                      +| ++||+++|+|++|+...+.       +.       ...+.+++++||||++ + +|+|+||+++++ .+.+.+....
T Consensus       209 ~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~-~G~r~G~~~~~~-~l~~~~~~~~  285 (427)
T 3ppl_A          209 METAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKIT-L-AGAGVSFFLTSA-ENRKWYTGHA  285 (427)
T ss_dssp             CCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTS-C-TTSSCEEEECCH-HHHHHHHHHH
T ss_pred             HHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhcc-C-cCccEEEEEcCH-HHHHHHHHHh
Confidence            88 9999999999999853221       11       1447899999999994 4 488999999874 4555565555


Q ss_pred             HhcCCCCChhhHHHHhhcccc-------HHHHHHHHHHHHHHHHHHHhcC-CCccEEecCCCCCCCchHHHhhhccCCCc
Q 021783          150 NAEGSGLAPFDCWICLRGVKT-------MALRVEKQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHELHYSQAKGAGS  221 (307)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (307)
                      .......+...+..+...++.       +....+.+.++.+.+.+.|.+. +.+           +++...  . ...+.
T Consensus       286 ~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~-----------~~~~~~--~-p~~g~  351 (427)
T 3ppl_A          286 GIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEY-----------GVAQWT--V-PAGGY  351 (427)
T ss_dssp             HHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG-----------TCCEEC--C-CSBSS
T ss_pred             hcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------CceEEe--C-CCccE
Confidence            555555555555555555443       1222233333444444444431 100           000000  0 12367


Q ss_pred             eEEEEeCCHHHHHHHHhcCCcceeecCCCCc-cceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc---CChHHHHHH
Q 021783          222 VLSFLTGSLALSKHVVETTKYFSITVSFGSV-KSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISD  297 (307)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~  297 (307)
                      ++++.+++.+ ...+.+.+.++||.+++|+. |...                  .+..++++|||++.   +++++.++.
T Consensus       352 ~~~~~~~~~~-~~~~~~~l~~~gv~v~~~g~~~~~~------------------~~~~~~~~Ris~~~~~~~~i~~~~~~  412 (427)
T 3ppl_A          352 FISLDVVPGT-ASRVAELAKEAGIALTGAGSSYPLR------------------QDPENKNLRLAPSLPPVEELEVAMDG  412 (427)
T ss_dssp             CEEEECSTTC-HHHHHHHHHHTTEECCCTTTTSGGG------------------CCTTSCEEEECCSSSCHHHHHHHHHH
T ss_pred             EEEEECCcch-HHHHHHHHHHCCCEEecCcCcCCCC------------------CCCCCCeEEEECCCCCHHHHHHHHHH
Confidence            7888886543 67778888889999998543 2210                  01246789999986   567778888


Q ss_pred             HHHHHhc
Q 021783          298 LDKALRT  304 (307)
Q Consensus       298 l~~~l~~  304 (307)
                      |.+++++
T Consensus       413 l~~~l~~  419 (427)
T 3ppl_A          413 VATCVLL  419 (427)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877754

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.94  E-value=1.7e-25  Score=193.63  Aligned_cols=253  Identities=11%  Similarity=0.099  Sum_probs=172.3

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCcccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQI   76 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~   76 (307)
                      |+ .++.++.++ +.+++..+.| +.  .+...++..|++++.++.+     |+++++  +++++++|++++++||||.+
T Consensus        73 al~~~~~~l~~~-~~i~~~~~~~-~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~--~~~~~~~v~~~~~~nptG~~  146 (362)
T 3ffr_A           73 IWERIIQNCVEK-KSFHCVNGSF-SK--RFYEFAGELGREAYKEEAAFGKGFYPADIT--VPADAEIICLTHNETSSGVS  146 (362)
T ss_dssp             HHHHHHHHHCSS-EEEEEECSHH-HH--HHHHHHHHTTCEEEEEECCTTCCCCGGGCC--CCTTCCEEEEESEETTTTEE
T ss_pred             HHHHHHHhccCC-cEEEEcCcHH-HH--HHHHHHHHhCCCeEEEecCCCCCCCHHHHh--ccCCccEEEEEcCCCCccee
Confidence            45 455567777 4444554444 42  2224567789999999864     788887  77899999999999999999


Q ss_pred             ccHHHHHHHHHHc-CCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHh---
Q 021783           77 CDIRKIAEMAHAH-GALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA---  151 (307)
Q Consensus        77 ~~~~~l~~~~~~~-~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~---  151 (307)
                      +|+++|.++|++| |+++|+|++|+.+..+ +...  +|++++|+||++++++|  +|+++++++.. +.+......   
T Consensus       147 ~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~~~~--~d~~~~s~~K~~~~~~G--~g~~~~~~~~~-~~~~~~~~gg~~  221 (362)
T 3ffr_A          147 MPVEDINTFRDKNKDALIFVDAVSSLPYPKFDWTK--IDSVFFSVQKCFGLPAG--LGVWILNDRVI-EKSKALLAKRKS  221 (362)
T ss_dssp             CCHHHHTTSGGGSTTSEEEEECTTTTTSSCCCTTS--CSEEEEETTSTTCCCSC--CEEEEEEHHHH-HHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHhCCCCEEEEecccccCCcccChhH--CcEEEEecccccCCCCc--eEEEEECHHHH-HHhhhccccCCC
Confidence            9999999999999 9999999999987755 3322  89999999999976888  78888886543 333332220   


Q ss_pred             -----------------c-CCCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCc
Q 021783          152 -----------------E-GSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG  208 (307)
Q Consensus       152 -----------------~-~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~  208 (307)
                                       . ..+.+.........+++     .++...++..++++.+.+.|++.+++. +..+.      
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~------  294 (362)
T 3ffr_A          222 IGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFS-FGVED------  294 (362)
T ss_dssp             CCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEE-ESSSC------
T ss_pred             CcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCce-eccCC------
Confidence                             0 12223233333333332     234556667777888888887765331 11100      


Q ss_pred             hHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc
Q 021783          209 HELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  288 (307)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~  288 (307)
                            .....+.+++|.+++  ...++.+.|..+||.++.|..+                       ..++++|+|++.
T Consensus       295 ------~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~~~~g~~~-----------------------~~~~~iRis~~~  343 (362)
T 3ffr_A          295 ------AKLRSMTTIVANTTM--LPGEINKILEPFDMAVGAGYGS-----------------------KKETQIRIANFP  343 (362)
T ss_dssp             ------GGGBCSSEEEEEESS--CHHHHHHHHGGGTEEEEECSGG-----------------------GTTTEEEEECCT
T ss_pred             ------hhhcCCceEEEecCC--CHHHHHHHHHHCCeEEecCccc-----------------------cCCCEEEEECCC
Confidence                  001235678888876  4788899998889988876431                       125679999997


Q ss_pred             CChHHHHHHHHHHHhc
Q 021783          289 EDVNDLISDLDKALRT  304 (307)
Q Consensus       289 ~~~~~~i~~l~~~l~~  304 (307)
                      ...++.++.+.++|++
T Consensus       344 ~~~~e~i~~l~~~l~~  359 (362)
T 3ffr_A          344 AHSLEQVHKLVQTLKE  359 (362)
T ss_dssp             TSCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            6666777777666654

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.93  E-value=1e-26  Score=201.52  Aligned_cols=258  Identities=14%  Similarity=0.154  Sum_probs=171.8

Q ss_pred             HH-HHHHHhcCCCCeEEEcC-CCCcchHHHHhhhcccCCcEEEEecC-----CChHHHHhhcCC--CceEEEEeCCCCCc
Q 021783            3 AL-AAVTHLLGTGEEIVAGD-DLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGP--WTKLVWVESPTNPR   73 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~-~~~~~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~--~~~~v~~~~~~n~t   73 (307)
                      |+ .++.+++++||+|++.+ +.|++..   ...++..|++++.++.     .|++++++++++  ++++|++++++|||
T Consensus        68 a~~~~~~~~~~~gd~vi~~~~~~~~~~~---~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~npt  144 (366)
T 1m32_A           68 AVEAVLGSALGPQDKVLIVSNGAYGARM---VEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTT  144 (366)
T ss_dssp             HHHHHHHHSCCTTCCEEEEESSHHHHHH---HHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTT
T ss_pred             HHHHHHHHhcCCCCeEEEEeCCCccHHH---HHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCc
Confidence            44 45556778999988765 5565422   2445667889988886     388999999873  68899999999999


Q ss_pred             cccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH-----
Q 021783           74 QQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-----  147 (307)
Q Consensus        74 G~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~-----  147 (307)
                      |.+.|+++|.++|++||+++|+|++|+.+..+ +...++.|++++|+||+++++.|  .|+++++++.. +.+..     
T Consensus       145 G~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~~~~g--~G~~~~~~~~~-~~~~~~~~~~  221 (366)
T 1m32_A          145 GMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPG--FAFVIAREQKL-AACKGHSRSL  221 (366)
T ss_dssp             TEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSS--EEEEEEEHHHH-TTCTTCCSCS
T ss_pred             ceecCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCcccccCCCc--eEEEEECHHHH-HhhcCCCCCc
Confidence            99999999999999999999999999977654 44456799999999999877777  69999986533 21110     


Q ss_pred             -------HH---Hh-c--CCCCChhhHHHHhhccccH------HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCc
Q 021783          148 -------LQ---NA-E--GSGLAPFDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG  208 (307)
Q Consensus       148 -------~~---~~-~--~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~  208 (307)
                             ..   .. .  ..+.+.........+++.+      ....++..++.+.+.+.|++. ++        .    
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~--------~----  288 (366)
T 1m32_A          222 SLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GF--------N----  288 (366)
T ss_dssp             TTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TC--------C----
T ss_pred             cccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CC--------e----
Confidence                   00   00 0  1233333333344444332      334455566666677666653 11        0    


Q ss_pred             hHHHhhhccCCCceEEEEeCC--HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEe
Q 021783          209 HELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  286 (307)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~  286 (307)
                        +..+.....+.++++.+++  ......+.+.|..+||.++.|..+                        .++++|+++
T Consensus       289 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~------------------------~~~~iRi~~  342 (366)
T 1m32_A          289 --TLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVS------------------------QSDCFRIGN  342 (366)
T ss_dssp             --BSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCS------------------------SSCEEEEEC
T ss_pred             --eccCchhcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcCC------------------------CCCEEEEec
Confidence              0000001124578888763  223677888888889988776542                        145799999


Q ss_pred             cc----CChHHHHHHHHHHHhcC
Q 021783          287 GI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       287 ~~----~~~~~~i~~l~~~l~~~  305 (307)
                      +.    ++++++++.|.++++++
T Consensus       343 ~~~~~~~~i~~~~~~l~~~~~~~  365 (366)
T 1m32_A          343 IGEVYAADITALLTAIRTAMYWT  365 (366)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhc
Confidence            85    45666666666666543

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.93  E-value=1.2e-25  Score=199.54  Aligned_cols=259  Identities=14%  Similarity=0.113  Sum_probs=169.0

Q ss_pred             cHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCC---------cEEEEecCCChHHHHhhc--CCCceEEEEeCCC
Q 021783            2 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG---------VVVKRVNTCDLDEVASAI--GPWTKLVWVESPT   70 (307)
Q Consensus         2 aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g---------~~~~~v~~~d~~~l~~~l--~~~~~~v~~~~~~   70 (307)
                      +++.++.+++++||+|++++|+|+++...+.. ....|         .+++.++.++.+.+...+  .++++++++++|+
T Consensus       130 ~al~~l~~l~~~gd~Vl~~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~  208 (432)
T 3ei9_A          130 CDISRLQVMFGSNVTIAVQDPSYPAYVDSSVI-MGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVGRTDIIFFCSPN  208 (432)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESCCTHHHHHHHH-HTCSCCEETTTTEETTCEEEECCGGGTTSCCGGGCCCCSEEEEESSC
T ss_pred             HHHHHHHHHcCCCCEEEEeCCCCHHHHHHHHH-cCCcccccccccccCceEEeccCcccCCcCChhhCCCCCEEEEeCCC
Confidence            35555677889999999999999888744322 22222         356666664322221112  3678999999999


Q ss_pred             CCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCcC----Cc----cCCCccEEEeccccccccCCCceeEEEEEcCh
Q 021783           71 NPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        71 n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~----~~----~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      ||||.+++   +++|+++|++||+++|+|++|+.....    ..    ...+.+++++|+||++ |.+|+|+|+++++++
T Consensus       209 NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~r~G~~~~~~~  287 (432)
T 3ei9_A          209 NPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYA-GFTGVRLGWTVIPKK  287 (432)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHH-CTTTTCCEEEECCTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhcc-CCcccceEEEEEChH
Confidence            99999986   777888899999999999999833211    11    1235789999999999 678999999999877


Q ss_pred             h-------HHHHHHHHHHhcCCCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCC
Q 021783          140 R-------LAKELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP  207 (307)
Q Consensus       140 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~  207 (307)
                      .       +.+.+...........+...+..+...+.     .+....+.+.++.+.+.+.|++. ++. +..       
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~-------  358 (432)
T 3ei9_A          288 LLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYD-VYG-------  358 (432)
T ss_dssp             CBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC-EEE-------
T ss_pred             HhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-Cce-ecC-------
Confidence            5       14445544444444455555555555443     23444555666777777777654 211 100       


Q ss_pred             chHHHhhhccCCCceEEEEeCCHHHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEe
Q 021783          208 GHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  286 (307)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~  286 (307)
                               ...+.++++.+++.+ ..++.+.+. ..||.+++|..|..                     .+++++|||+
T Consensus       359 ---------~~~~~~~~~~~~~~~-~~~~~~~ll~~~gv~v~~g~~f~~---------------------~~~~~iRis~  407 (432)
T 3ei9_A          359 ---------GKNAPYVWVHFPNQS-SWDVFAEILEKTHVVTTPGSGFGP---------------------GGEGFVRVSA  407 (432)
T ss_dssp             ---------CSSSSEEEEECTTSC-HHHHHHHHHHHHCEECEEGGGGCG---------------------GGTTEEEEEC
T ss_pred             ---------CCcceEEEEECCCCC-HHHHHHHHHHHCCEEEeCchHhCC---------------------CCCCEEEEEe
Confidence                     113567788887443 555666554 45999988876431                     1257899999


Q ss_pred             cc--CChHHHHHHHHHHH
Q 021783          287 GI--EDVNDLISDLDKAL  302 (307)
Q Consensus       287 ~~--~~~~~~i~~l~~~l  302 (307)
                      ..  +++++.+++|++.-
T Consensus       408 ~~~~e~l~~~l~rl~~~~  425 (432)
T 3ei9_A          408 FGHRENILEACRRFKQLY  425 (432)
T ss_dssp             CSCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHh
Confidence            64  56666666666543

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.93  E-value=6.3e-25  Score=193.43  Aligned_cols=257  Identities=18%  Similarity=0.126  Sum_probs=172.2

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----------------ChHHHHhhcCCCceEEEEeC
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----------------DLDEVASAIGPWTKLVWVES   68 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----------------d~~~l~~~l~~~~~~v~~~~   68 (307)
                      .++..++++||+|+++.|+|.++.    ..++..|++++.++.+                |++++++++++++++|++++
T Consensus       100 ~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~  175 (410)
T 3e2y_A          100 NSIQGLVDPGDEVIIMVPFYDCYE----PMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNT  175 (410)
T ss_dssp             HHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEEES
T ss_pred             HHHHHhcCCCCEEEEeCCCchhhH----HHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCceEEEEeC
Confidence            455567899999999999999887    5567789999888764                88999999998999999999


Q ss_pred             CCCCccccc---cHHHHHHHHHHcCCEEEEeCccCCCCcC-----Cc----cCCCccEEEeccccccccCCCceeEEEEE
Q 021783           69 PTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS-----RP----LELGADIVMHSATKFIAGHSDVMAGVLAV  136 (307)
Q Consensus        69 ~~n~tG~~~---~~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~----~~~~~d~~~~s~~K~~~g~~g~~~G~~~~  136 (307)
                      |+||||.++   ++++|+++|++||+++|+|++|+.....     ..    ...+.++++.|+||.+ |++|+|+|++++
T Consensus       176 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~~~~  254 (410)
T 3e2y_A          176 PHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTF-SVTGWKLGWSIG  254 (410)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHS-SCGGGCCEEEEC
T ss_pred             CCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhc-CCCCceEEEEEE
Confidence            999999996   6999999999999999999999742211     11    1235679999999999 667899999998


Q ss_pred             cChhHHHHHHHHHHhcCCCCChhhHHHHhhccc-----------cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCC
Q 021783          137 KGERLAKELYFLQNAEGSGLAPFDCWICLRGVK-----------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE  205 (307)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~  205 (307)
                      +++ +.+.+...........+...+..+...++           .+....+.+.++.+.+.+.|++. ++ .+..+    
T Consensus       255 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~----  327 (410)
T 3e2y_A          255 PAH-LIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GL-KPIVP----  327 (410)
T ss_dssp             CHH-HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TC-EEEBC----
T ss_pred             CHH-HHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CC-eecCC----
Confidence            755 44445554444444445544444444332           24445566667777777777765 22 11111    


Q ss_pred             CCchHHHhhhccCCCceEEEEeCCHH-----------HHHHHHhc-CCcceeecCCCCccceeecccccCCCCCcHHHHH
Q 021783          206 HPGHELHYSQAKGAGSVLSFLTGSLA-----------LSKHVVET-TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ  273 (307)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~  273 (307)
                                  ..+.++++.+....           ...++.+. ++++||.+.+|+.|....          +     
T Consensus       328 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~----------~-----  380 (410)
T 3e2y_A          328 ------------DGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSK----------S-----  380 (410)
T ss_dssp             ------------SBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTT----------T-----
T ss_pred             ------------CccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCC----------C-----
Confidence                        13455566553210           12344443 456799998887643100          0     


Q ss_pred             hcCCCCCeEEEEeccCChHHHHHHHHHHHh
Q 021783          274 ARGLTEDLVRISVGIEDVNDLISDLDKALR  303 (307)
Q Consensus       274 ~~~~~~~~iRis~~~~~~~~~i~~l~~~l~  303 (307)
                       ....++++|||++.  .++.++...+.|+
T Consensus       381 -~~~~~~~iRis~~~--~~e~l~~~l~~l~  407 (410)
T 3e2y_A          381 -KPHFEKLVRFCFIK--KDSTLDAAEEIFR  407 (410)
T ss_dssp             -HHHHTTEEEEECCC--CHHHHHHHHHHHH
T ss_pred             -CCCCCCEEEEEEcC--CHHHHHHHHHHHH
Confidence             00125789999987  3333444444443

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.93  E-value=5.5e-26  Score=197.79  Aligned_cols=276  Identities=17%  Similarity=0.205  Sum_probs=182.2

Q ss_pred             HH-HHHHHh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccc
Q 021783            3 AL-AAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         3 al-~~~~~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~   75 (307)
                      |+ .++.++ +++||+|+++.++|+++.    ..++..|++++.++.+     |++++++.+++++++|+   ++||||.
T Consensus        65 a~~~~~~~~~~~~gd~v~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~  137 (374)
T 3uwc_A           65 ALAMSFKMLNIGAGDEVITCANTFIASV----GAIVQAGATPVLVDSENGYVIDPEKIEAAITDKTKAIM---PVHYTGN  137 (374)
T ss_dssp             HHHHHHHHTTCCTTCEEEEESSSCHHHH----HHHHHTTCEEEEECBCTTSSBCGGGTGGGCCTTEEEEC---CBCGGGC
T ss_pred             HHHHHHHHcCCCCCCEEEECCCccHHHH----HHHHHcCCEEEEEecCCCCCcCHHHHHHhCCCCceEEE---EeCCcCC
Confidence            44 455667 899999999999999887    5567789999999986     89999999998888887   8899999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCccCCCCcCCccCCC--ccEEEeccc--cccccCCCceeEEEEEcChhHHHHHHHHHHh
Q 021783           76 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSAT--KFIAGHSDVMAGVLAVKGERLAKELYFLQNA  151 (307)
Q Consensus        76 ~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~d~~~~s~~--K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~  151 (307)
                      ..++++|.++|++||+++|+|++|+.+........+  .|+++.|+|  |++++++.  +|+++++++.+.+.+......
T Consensus       138 ~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~--~g~~~~~~~~~~~~~~~~~~~  215 (374)
T 3uwc_A          138 IADMPALAKIAKKHNLHIVEDACQTILGRINDKFVGSWGQFACFSLHPLKNLNVWSD--AGVIITHSDEYAEKLRLYRNH  215 (374)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECSSSSSSCCSSC--CEEEEESCHHHHHHHHHHTBT
T ss_pred             cCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeeccccccEEEEeCCCCCcCCccce--eEEEEeCCHHHHHHHHHHHhc
Confidence            999999999999999999999999987644333333  699999987  99954233  899998877676655544321


Q ss_pred             c------------CCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCC
Q 021783          152 E------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  219 (307)
Q Consensus       152 ~------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (307)
                      .            ........+.+....++.++...++..++.+.+.+.++..+..  +..+.....         ....
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~---------~~~~  284 (374)
T 3uwc_A          216 GLINRDVCVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEF--IDVPVRREG---------VYHV  284 (374)
T ss_dssp             TEEETTEESSCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTT--EECCCCCTT---------EECC
T ss_pred             CccccCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCe--EEeccCCCC---------Ccee
Confidence            1            1123445555555556666666667777777777777765420  111111000         0001


Q ss_pred             CceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccC----CCCCcHHHHHhcCCCCCeEEEEecc----CCh
Q 021783          220 GSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS----HASIPVEVRQARGLTEDLVRISVGI----EDV  291 (307)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~iRis~~~----~~~  291 (307)
                      ...+.+...   +...+.+.|..+||.++.+...+..+.|....    ...++....    ..++.+|++++.    +|+
T Consensus       285 ~~~~~~~~~---~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~lrl~~~~~~t~edi  357 (374)
T 3uwc_A          285 FHIYVLRVK---YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEK----HGEAVITLPAHPYLTEEEI  357 (374)
T ss_dssp             CSSEEEEET---THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHH----HHHHEEEECCCTTSCHHHH
T ss_pred             eEEEEEEcC---CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHH----HHhCEEEccCCCCCCHHHH
Confidence            122333333   36678888888899998876322222222110    011111110    113679999975    667


Q ss_pred             HHHHHHHHHHHhcC
Q 021783          292 NDLISDLDKALRTG  305 (307)
Q Consensus       292 ~~~i~~l~~~l~~~  305 (307)
                      +++++.|.+++++.
T Consensus       358 ~~~~~~l~~~l~~~  371 (374)
T 3uwc_A          358 NYIIKKVREFYLEK  371 (374)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhh
Confidence            77777777766543

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.93  E-value=1.4e-25  Score=193.42  Aligned_cols=253  Identities=14%  Similarity=0.113  Sum_probs=172.6

Q ss_pred             HHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-----CChHHHHhhcCC-CceEEEEeCCCCCccccccH
Q 021783            6 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGP-WTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         6 ~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~~   79 (307)
                      ++.++++  |+|++++++|+++  .+...++..|++++.++.     .|++++++.+++ ++++|++++++||||.+.|+
T Consensus        68 ~~~~~~~--d~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~  143 (353)
T 2yrr_A           68 GLANLDR--GPVLVLVNGAFSQ--RVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPA  143 (353)
T ss_dssp             HHHTCSC--CCEEEEECSHHHH--HHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCH
T ss_pred             HHHHhcC--CcEEEEcCCCchH--HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCH
Confidence            3334555  8999999999876  333556778999999986     378999999986 89999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH------------
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY------------  146 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~------------  146 (307)
                      ++|.++|++||+++|+|++|+.+..+ +...++.|++++|+||++++++|  +|+++++++.. +.+.            
T Consensus       144 ~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g--~G~~~~~~~~~-~~l~~~~~~~~~~~~~  220 (353)
T 2yrr_A          144 EAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPG--LAPIAASLEAR-KAFTGKRGWYLDLARV  220 (353)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSS--CEEEEECHHHH-HHCCCCSCSTTCHHHH
T ss_pred             HHHHHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcccccCCCc--eEEEEECHHHH-HHhccCCCccccHHHH
Confidence            99999999999999999999876654 34445789999999998878778  79999986644 2221            


Q ss_pred             -HHH--HhcCCCCChhhHHHHhhcccc-----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          147 -FLQ--NAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       147 -~~~--~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                       ...  .....+.+.........+++.     +....++..++.+.+.+.|++. ++ .+..+              ...
T Consensus       221 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~--------------~~~  284 (353)
T 2yrr_A          221 AEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GF-RPYPK--------------ASP  284 (353)
T ss_dssp             HHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC-EESCS--------------SSB
T ss_pred             hhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CC-ccccC--------------ccC
Confidence             101  111122333333333333332     3334555566666777777654 22 11100              011


Q ss_pred             CCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec----cCChH-H
Q 021783          219 AGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVN-D  293 (307)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~~~-~  293 (307)
                      .+.+++|.++......++.+.|..+||.++.|..+.                       .++++|+|++    .++++ +
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~-----------------------~~~~iRi~~~~~~~~~~~~~~  341 (353)
T 2yrr_A          285 LPTVLVVRPPEGVDADRLVRALYAEGVAVAGGIGPT-----------------------RGQVLRLGLMGEGARREAYQA  341 (353)
T ss_dssp             CTTEEEEECCTTCCHHHHHHHHHHTTEECEECCGGG-----------------------TTTCEEEECSGGGSCHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHCCEEEeCCcccc-----------------------CCCeEEEecCccCCHHHHHHH
Confidence            355667887532236778888888899888776421                       2456999993    25666 7


Q ss_pred             HHHHHHHHHhc
Q 021783          294 LISDLDKALRT  304 (307)
Q Consensus       294 ~i~~l~~~l~~  304 (307)
                      +++.|.++++.
T Consensus       342 ~~~~l~~~l~~  352 (353)
T 2yrr_A          342 FLKALDRALAL  352 (353)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            78888777653

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.93  E-value=7.5e-26  Score=195.26  Aligned_cols=250  Identities=14%  Similarity=0.129  Sum_probs=175.2

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-CChHHHHhhcCCCceEEEEeCCCCCccccccHHH
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRK   81 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~   81 (307)
                      |+.++...+. ||+|+++.|+|.++.    ..++..|++++.++. ++.+.+..   +++++|++++|+||||.+++.++
T Consensus        79 al~~~~~~l~-gd~Vi~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~~---~~~~~v~i~~p~nptG~~~~~~~  150 (350)
T 3fkd_A           79 AFYQIAQAFR-GSRSLIAIPSFAEYE----DACRMYEHEVCFYPSNEDIGEADF---SNMDFCWLCNPNNPDGRLLQRTE  150 (350)
T ss_dssp             HHHHHHHHTT-TCEEEEEESCCHHHH----HHHHHTTCEEEEEETTSCGGGSCC---TTCSEEEEESSCTTTCCCCCHHH
T ss_pred             HHHHHHHHHC-CCEEEEeCCCcHHHH----HHHHHcCCeEEEEecCCccccCcc---CCCCEEEEeCCCCCcCCCCCHHH
Confidence            4533333333 999999999998887    667778999999998 54343321   68999999999999999999999


Q ss_pred             HHHHHHHcC-CEEEEeCccCCCCcC------CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCC
Q 021783           82 IAEMAHAHG-ALLLVDNSIMSPVLS------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS  154 (307)
Q Consensus        82 l~~~~~~~~-~~li~D~a~~~~~~~------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~  154 (307)
                      +.++++.++ .++|+|++|+.....      .....+.+++++|+||++ +.+|+|+|+++++ +.+.+.+.....  ..
T Consensus       151 l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~~~G~r~G~~~~~-~~~~~~~~~~~~--~~  226 (350)
T 3fkd_A          151 ILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAY-GIPGLRIGYIVAN-KDFMKRVAAFST--PW  226 (350)
T ss_dssp             HHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHH-SCGGGCCEEEECC-HHHHHHHHTTCC--TT
T ss_pred             HHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhc-cCcchheEeEEeC-HHHHHHHHHhCC--CC
Confidence            999999886 799999999743321      222446789999999999 6678899999995 445444433321  22


Q ss_pred             CCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHH
Q 021783          155 GLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA  231 (307)
Q Consensus       155 ~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (307)
                      ..+...+..+...++.   +..+.++..++.+.+.+.|++.+.+. + .                +..++++++.++.. 
T Consensus       227 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~-~----------------~~~~~~~~~~~~~~-  287 (350)
T 3fkd_A          227 AVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVE-V-H----------------PSGTTFFLLRLKKG-  287 (350)
T ss_dssp             CSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEE-E-C----------------CCSSSEEEEEESSS-
T ss_pred             CCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcE-E-C----------------CCCCcEEEEECCCC-
Confidence            3444555544444332   22333444577778888887664331 1 1                11366777888654 


Q ss_pred             HHHHHHhcCCc-ceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHHhc
Q 021783          232 LSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKALRT  304 (307)
Q Consensus       232 ~~~~~~~~l~~-~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l~~  304 (307)
                      ...++.+.|.. +||.+++|..|.                     +..++++|||++. ++++++++.|++.+++
T Consensus       288 ~~~~l~~~L~~~~gi~v~~g~~f~---------------------~~~~~~iRis~~~~~~~~~l~~al~~~~~~  341 (350)
T 3fkd_A          288 TAAELKKYMLEEYNMLIRDASNFR---------------------GLDESYVRITTQRPAQNQLFIKALETFLEK  341 (350)
T ss_dssp             CHHHHHHHHHHTTCEECEECTTST---------------------TCCTTEEEEECCCHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHCCEEEEeCccCC---------------------CCCCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence            47788888887 899999887632                     1236789999986 5677888888887764

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.93  E-value=6e-27  Score=209.75  Aligned_cols=268  Identities=10%  Similarity=0.066  Sum_probs=172.4

Q ss_pred             HH-HHHHHhcCCCCe---EEEcCCCCcchHHHHhhhcccCCcEE-----EEecCC-----ChHHHHhhcC---CCceEEE
Q 021783            3 AL-AAVTHLLGTGEE---IVAGDDLYGGTDRLLSRVTPKTGVVV-----KRVNTC-----DLDEVASAIG---PWTKLVW   65 (307)
Q Consensus         3 al-~~~~~~~~~gd~---Vlv~~~~~~~~~~~~~~~~~~~g~~~-----~~v~~~-----d~~~l~~~l~---~~~~~v~   65 (307)
                      ++ .++.++++|||+   |+++.++|++....+...++..|+++     ...+.+     |+++++++++   +++++|+
T Consensus       140 al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~  219 (465)
T 3e9k_A          140 NLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVIL  219 (465)
T ss_dssp             HHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEE
T ss_pred             HHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcCCCeEEEE
Confidence            45 344556666655   99999999998877777778888774     233432     7999999996   6899999


Q ss_pred             EeCCCCCccccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccc-cCCCceeEEEEEcChhHHH
Q 021783           66 VESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA-GHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        66 ~~~~~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~-g~~g~~~G~~~~~~~~~~~  143 (307)
                      +++++||||.+.|+++|.++|++||+++|+|++|+.|..+ +...+++|++++|+||+++ ||.|  .|+++++++....
T Consensus       220 ~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~gp~~--~g~l~~~~~~~~~  297 (465)
T 3e9k_A          220 FSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGG--IAGAFIHEKHAHT  297 (465)
T ss_dssp             EESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCEEEECSSSTTCCCTTC--CCEEEECGGGTTT
T ss_pred             EeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCEEEECcccccccCCCc--eEEEEEcHHHHhh
Confidence            9999999999999999999999999999999999998876 5566789999999999994 6655  7888888654321


Q ss_pred             HHHHH---------HHh---------------cCCCCChhhHHHHhhccccH-----HHHHHHHHHHHHHHHHHHhcCCC
Q 021783          144 ELYFL---------QNA---------------EGSGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPR  194 (307)
Q Consensus       144 ~~~~~---------~~~---------------~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~~~~~  194 (307)
                      .....         ...               ..++.+........++++.+     +...++..++.+.+.+.+++...
T Consensus       298 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  377 (465)
T 3e9k_A          298 IKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYG  377 (465)
T ss_dssp             SCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             cCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            11000         000               01123333333333444332     23334444555555555554200


Q ss_pred             ccEEecCCCCCCCchHHHhh-hccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHH
Q 021783          195 VKKVNYAGLPEHPGHELHYS-QAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ  273 (307)
Q Consensus       195 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~  273 (307)
                          .++.+...+++++..+ .+...+++++|.++  .....+.+.|..+||.++.+                       
T Consensus       378 ----~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~--~~~~~l~~~L~~~Gi~v~~~-----------------------  428 (465)
T 3e9k_A          378 ----KDKAATKKPVVNIITPSHVEERGCQLTITFS--VPNKDVFQELEKRGVVCDKR-----------------------  428 (465)
T ss_dssp             -------------CEEECSCSSGGGBCSCEEEEEC--CTTCCHHHHHHTTTEECEEE-----------------------
T ss_pred             ----ccccccCCCCeEEeCCCCHhhcccEEEEEec--CCHHHHHHHHHHCCEEEecC-----------------------
Confidence                0011111122222221 12335788888886  22456667777778876521                       


Q ss_pred             hcCCCCCeEEEEe-cc----CChHHHHHHHHHHHhcC
Q 021783          274 ARGLTEDLVRISV-GI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       274 ~~~~~~~~iRis~-~~----~~~~~~i~~l~~~l~~~  305 (307)
                          .++++|+|+ +.    ++++++++.|++++++.
T Consensus       429 ----~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~  461 (465)
T 3e9k_A          429 ----NPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSA  461 (465)
T ss_dssp             ----TTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             ----CCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence                145699998 43    67777777777777653

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.93  E-value=8.6e-26  Score=197.77  Aligned_cols=236  Identities=15%  Similarity=0.056  Sum_probs=163.5

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCC-CceEEEEeCCCCCccccccHHHHHHHH
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMA   86 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~~~~l~~~~   86 (307)
                      +||+|++++++|+++.    ..++..|++++.+|.+     |++++++.+++ +++++++++|+||||.+.|+++|.++|
T Consensus       122 ~gd~vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~  197 (397)
T 3f9t_A          122 EHPKIIVPITAHFSFE----KGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIA  197 (397)
T ss_dssp             SSCEEEEETTCCTHHH----HHHHHHTCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHH
T ss_pred             CCeEEEECCcchhHHH----HHHHHcCceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHH
Confidence            4999999999999887    5566679999999986     89999999987 899999999999999999999999999


Q ss_pred             HHcCCEEEEeCccCCCCcC---------------CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHh
Q 021783           87 HAHGALLLVDNSIMSPVLS---------------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  151 (307)
Q Consensus        87 ~~~~~~li~D~a~~~~~~~---------------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~  151 (307)
                      ++||+++|+|++|+.+..+               +... ++|+++.|+||+++++.  ++|+++++++.+.+.+......
T Consensus       198 ~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~--~~g~~~~~~~~~~~~~~~~~~~  274 (397)
T 3f9t_A          198 KENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPI--PSGGILFKDIGYKRYLDVDAPY  274 (397)
T ss_dssp             HHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCS--SCEEEEESSGGGGGGTCEECTT
T ss_pred             HHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCC--CceEEEEeCHHHHHhhccCCcc
Confidence            9999999999999754321               2233 78999999999985544  4888888877554332211111


Q ss_pred             c---------CCCC--ChhhHHHHhhcc--ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          152 E---------GSGL--APFDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       152 ~---------~~~~--~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      .         +...  ....++.+...+  ..+....++..++.+.+.+.|++. ++.. ..                ..
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~----------------~~  336 (397)
T 3f9t_A          275 LTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN-NFKP-VI----------------EP  336 (397)
T ss_dssp             SSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCB-SS----------------CC
T ss_pred             ccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEE-Ec----------------CC
Confidence            1         1111  122333333222  233445566667777777777755 2110 00                11


Q ss_pred             CCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHH
Q 021783          219 AGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDL  294 (307)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~  294 (307)
                      .+++++|.+.+   ...+.+.|.++||.++.|..                          ++++|++++.    ++++++
T Consensus       337 ~~~~~~~~~~~---~~~~~~~l~~~gi~v~~~~~--------------------------~~~~Ri~~~~~~~~e~i~~~  387 (397)
T 3f9t_A          337 ILNIVAIEDED---YKEVCKKLRDRGIYVSVCNC--------------------------VKALRIVVMPHIKREHIDNF  387 (397)
T ss_dssp             SSSEEEEECTT---HHHHHHHHHHTTCBCEECSS--------------------------SSEEEEECCTTCCHHHHHHH
T ss_pred             CccEEEEEeCC---HHHHHHHHHhCCeEEeccCC--------------------------CCEEEEEEcCCCCHHHHHHH
Confidence            36777887764   45677777777887776543                          4579999985    455555


Q ss_pred             HHHHHHHH
Q 021783          295 ISDLDKAL  302 (307)
Q Consensus       295 i~~l~~~l  302 (307)
                      ++.|.+++
T Consensus       388 ~~~l~~~l  395 (397)
T 3f9t_A          388 IEILNSIK  395 (397)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhh
Confidence            55555544

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.93  E-value=6.2e-25  Score=191.13  Aligned_cols=275  Identities=14%  Similarity=0.099  Sum_probs=189.2

Q ss_pred             HH-HHHHHh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhc-CCC--ceEEEEeCCCC
Q 021783            3 AL-AAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAI-GPW--TKLVWVESPTN   71 (307)
Q Consensus         3 al-~~~~~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l-~~~--~~~v~~~~~~n   71 (307)
                      |+ .++.++ ++|||+|++++++|+++.    ..+...|+++++++.+      |++++++++ +++  |++|+   ++|
T Consensus        65 al~~al~~l~~~~Gd~Vi~~~~~~~~~~----~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~  137 (377)
T 3ju7_A           65 GLMAAIQLKKRKKGKYALMPSFTFPATP----LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---PYA  137 (377)
T ss_dssp             HHHHHHHHHSCTTCCEEEEESSSCTHHH----HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBC
T ss_pred             HHHHHHHHcCCCCcCEEEECCCCcHHHH----HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---EEC
Confidence            44 455566 899999999999999888    5566789999999864      899999988 556  89887   678


Q ss_pred             CccccccHHHHHHHHHHcCCEEEEeCccCCCCcCCccCC---CccEEEecc--ccccccCCCceeEEEEEcChhHHHHHH
Q 021783           72 PRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLEL---GADIVMHSA--TKFIAGHSDVMAGVLAVKGERLAKELY  146 (307)
Q Consensus        72 ~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~---~~d~~~~s~--~K~~~g~~g~~~G~~~~~~~~~~~~~~  146 (307)
                      |+|...|+++|.++|+ ||+++|+|++|+.|........   ..|+.+.||  +|++++ +  .+|+++++++.+.+.+.
T Consensus       138 ~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~S~~~~K~l~~-g--~gG~~~~~~~~l~~~~~  213 (377)
T 3ju7_A          138 TFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIYSFHATKPFGI-G--EGGLIYSKNEEDIQRIK  213 (377)
T ss_dssp             GGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEEECBTTSSSCC-B--SCEEEEESCHHHHHHHH
T ss_pred             CCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEEECCCCCcCCC-C--CcEEEEECCHHHHHHHH
Confidence            8999999999999999 9999999999998765433233   256666665  699964 3  38999998887777666


Q ss_pred             HHHHhc------------CCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhh
Q 021783          147 FLQNAE------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS  214 (307)
Q Consensus       147 ~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~  214 (307)
                      ......            ...++...+++....++.+..+.++..++++.+.+.|+..+.+.....+.-..         
T Consensus       214 ~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~---------  284 (377)
T 3ju7_A          214 RMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTE---------  284 (377)
T ss_dssp             HHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCS---------
T ss_pred             HHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCC---------
Confidence            554422            24566777888888888888888999999999999998765321000010000         


Q ss_pred             hccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCC--CCCcHHHHHhcCCCCCeEEEEeccCChH
Q 021783          215 QAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH--ASIPVEVRQARGLTEDLVRISVGIEDVN  292 (307)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~iRis~~~~~~~  292 (307)
                        .....++.+.+++....+.+.+.|..+||.++.+........|....+  ..++......    ++.+|++++..-.+
T Consensus       285 --~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----~~~l~lp~~~~~t~  358 (377)
T 3ju7_A          285 --AVIQQFMPILCPEEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIA----KRIVSLPLWEGMTK  358 (377)
T ss_dssp             --CBCCSSEEEECCTTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHH----HHEEEECCCTTCCH
T ss_pred             --cceEEEEEEEeCChhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHH----hCEEECCCCCCCCH
Confidence              001223455555433478899999999999988763222223322221  2233332222    35699999875555


Q ss_pred             HHHHHHHHHHh
Q 021783          293 DLISDLDKALR  303 (307)
Q Consensus       293 ~~i~~l~~~l~  303 (307)
                      +.++.+.+.|+
T Consensus       359 ~di~~v~~~l~  369 (377)
T 3ju7_A          359 EIVEQIVICLG  369 (377)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            55555555554

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.93  E-value=5.4e-26  Score=199.32  Aligned_cols=258  Identities=14%  Similarity=0.144  Sum_probs=175.4

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-----CChHHHHhhcCC-CceEEEEeCCCCCcccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGP-WTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~~~   78 (307)
                      .++.+++++||+|++++|+|+++.  +...++..|++++.++.     .|++++++.+++ ++++|++++++||||.+.|
T Consensus        84 ~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~  161 (396)
T 2ch1_A           84 AMLSNLLEEGDRVLIAVNGIWAER--AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP  161 (396)
T ss_dssp             HHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred             HHHHHhcCCCCeEEEEcCCcccHH--HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecC
Confidence            455567899999999999998763  22456778999999985     488999999986 8999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH---------
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL---------  148 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~---------  148 (307)
                      +++|.++|+++|+++|+|++|+.+..+ +...++.|++++|+||+++++.|  .|+++++++.+ +.+...         
T Consensus       162 ~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g--~g~~~~~~~~~-~~~~~~~~~~~~~~~  238 (396)
T 2ch1_A          162 LEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPG--ITPISISPKAL-DVIRNRRTKSKVFYW  238 (396)
T ss_dssp             CTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSS--CEEEEECHHHH-HHHHTCSSCCSCGGG
T ss_pred             HHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEEEcCCccccCCCC--eEEEEECHHHH-HhhhhccCcccceEe
Confidence            999999999999999999999976654 45566789999999999878877  69999986433 332110         


Q ss_pred             -----HH-h--------cCCCCChhhHHHHhhcccc-----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCch
Q 021783          149 -----QN-A--------EGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGH  209 (307)
Q Consensus       149 -----~~-~--------~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~  209 (307)
                           .. .        ...+.+...+..+..+++.     +....++..++.+.+.+.|++. ++. +    ....   
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~----~~~~---  309 (396)
T 2ch1_A          239 DLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLD-I----FVKD---  309 (396)
T ss_dssp             CHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCC-B----SSCS---
T ss_pred             chHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCe-e----ccCC---
Confidence                 00 0        1112222333333333332     3334555566666677766643 110 0    0000   


Q ss_pred             HHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcc-eeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEe-c
Q 021783          210 ELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV-G  287 (307)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~-~  287 (307)
                           .....+.++++.++...+...+.+.|..+ ||.++.|..+                       ..++++||++ +
T Consensus       310 -----~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~-----------------------~~~~~iRi~~~~  361 (396)
T 2ch1_A          310 -----PRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGP-----------------------TFGKAWRVGIMG  361 (396)
T ss_dssp             -----GGGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGG-----------------------GTTTEEEEECCG
T ss_pred             -----ccccCCceEEEEcCCCCCHHHHHHHHHHhCCEEEecCccc-----------------------cCCCEEEEECCC
Confidence                 00012347788875322367788887654 9988876531                       0256799999 5


Q ss_pred             c----CChHHHHHHHHHHHhc
Q 021783          288 I----EDVNDLISDLDKALRT  304 (307)
Q Consensus       288 ~----~~~~~~i~~l~~~l~~  304 (307)
                      .    ++++++++.|.+++++
T Consensus       362 ~~~~~e~i~~~~~~l~~~l~~  382 (396)
T 2ch1_A          362 ECSTVQKIQFYLYGFKESLKA  382 (396)
T ss_dssp             GGCSHHHHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHHHHH
Confidence            2    5688888888888764

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.93  E-value=4.1e-25  Score=192.23  Aligned_cols=258  Identities=18%  Similarity=0.192  Sum_probs=167.7

Q ss_pred             HHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceE-EEEeCCCCCcc-ccccHHHHH
Q 021783            6 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKL-VWVESPTNPRQ-QICDIRKIA   83 (307)
Q Consensus         6 ~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~-v~~~~~~n~tG-~~~~~~~l~   83 (307)
                      ++.++  |||+|++++|+|+++...+. .++..|++++.+  .|++++++. ++++++ |++++|+|||| ...++++|.
T Consensus        92 ~~~~~--~gd~Vl~~~~~y~~~~~~~~-~~~~~g~~~~~v--~d~~~l~~~-~~~~~~~v~~~~p~nptG~~~~~l~~i~  165 (374)
T 2aeu_A           92 TILAL--KPKKVIHYLPELPGHPSIER-SCKIVNAKYFES--DKVGEILNK-IDKDTLVIITGSTMDLKVIELENFKKVI  165 (374)
T ss_dssp             HHHHH--CCSEEEEECSSSSCCTHHHH-HHHHTTCEEEEE--SCHHHHHTT-CCTTEEEEEECBCTTSCBCCHHHHHHHH
T ss_pred             HHHhC--CCCEEEEecCCCCccHHHHH-HHHHcCcEEEEe--CCHHHHHhc-CCCccEEEEEccCCCCCCCCcccHHHHH
Confidence            34444  99999999999887665443 567789999988  689999998 888999 99999999999 888999999


Q ss_pred             HHHHHcCCEEEEeCccCCCCc----C-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCCh
Q 021783           84 EMAHAHGALLLVDNSIMSPVL----S-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP  158 (307)
Q Consensus        84 ~~~~~~~~~li~D~a~~~~~~----~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (307)
                      ++|++||+++|+|++|+.+..    . .+..++.|++++|+||+++|+   ++|+++++++ +.+.+.......+...++
T Consensus       166 ~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~---~~G~~~~~~~-~~~~l~~~~~~~~~~~~~  241 (374)
T 2aeu_A          166 NTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGP---RGGLLAGKKE-LVDKIYIEGTKFGLEAQP  241 (374)
T ss_dssp             HHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSC---SCEEEEEEHH-HHHHHHHHHHTTTCBCCH
T ss_pred             HHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCc---ceEEEEECHH-HHHHHHHhhccccCCCCH
Confidence            999999999999999975431    1 134457899999999998653   4899998854 555555544444445566


Q ss_pred             hhHHHHhhccccHHH-HHHHHHHHHHHH----HHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEE-eCCHH-
Q 021783          159 FDCWICLRGVKTMAL-RVEKQQDNAQKI----AEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL-TGSLA-  231 (307)
Q Consensus       159 ~~~~~~~~~l~~~~~-~~~~~~~~~~~l----~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-  231 (307)
                      ..++.+..+++.+.. +++++.++.+.+    .+.+++.       .+.+...+++...   +...+.++.+. ..... 
T Consensus       242 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------L~~~~~~~g~~~~---~~~~g~~~~~~~~~~~~~  311 (374)
T 2aeu_A          242 PLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKE-------LKAIDDNINIVYE---RTPTGFVIKRVYKDDTIN  311 (374)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHH-------HTTTCTTEEEEEE---ECSSEEEEEEEESSHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhhhhccCccee---eCCceEEEEeeccccccc
Confidence            666666666554322 455555555555    3444321       0001000111110   01123444442 22111 


Q ss_pred             --HHHHHH-hcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-----CChHHHHHHHHHHHh
Q 021783          232 --LSKHVV-ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-----EDVNDLISDLDKALR  303 (307)
Q Consensus       232 --~~~~~~-~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-----~~~~~~i~~l~~~l~  303 (307)
                        ...++. +.+.++||.+.+|..+.                      ..++++||+++.     .+++++.+.|.++++
T Consensus       312 ~~~~~~~~~~ll~~~gV~v~~g~~~~----------------------~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~  369 (374)
T 2aeu_A          312 IKKLIEIGFNLLKNYGIITITVAGMP----------------------GASKSLRIDLTSRDAERIDDNYIIKAIVESIK  369 (374)
T ss_dssp             HHHHHHHHHHHHHHHCEECSTTSSSC----------------------SSCCSEEEETTSGGGGGSCHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHhCCEEEecCCCCC----------------------CCCCeEEEEcCCchHHHHHHHHHHHHHHHHHH
Confidence              111243 34456799998875421                      124579999974     246777777777776


Q ss_pred             cC
Q 021783          304 TG  305 (307)
Q Consensus       304 ~~  305 (307)
                      ++
T Consensus       370 ~~  371 (374)
T 2aeu_A          370 MA  371 (374)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.93  E-value=1.1e-24  Score=189.19  Aligned_cols=273  Identities=16%  Similarity=0.128  Sum_probs=189.2

Q ss_pred             HH-HHHHHh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.++ +++||+|+++.++|+++.    ..++..|++++.++.+      |++++++++++++++|+   ++||+|
T Consensus        62 al~~al~~~~~~~gd~Vi~~~~~~~~~~----~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G  134 (367)
T 3nyt_A           62 ALQIVQMALGVGPGDEVITPGFTYVATA----ETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLYG  134 (367)
T ss_dssp             HHHHHHHHTTCCTTCEEEEESSSCTHHH----HHHHHTTCEEEEECBCTTTCSBCGGGTGGGCCTTEEEEC---CBCGGG
T ss_pred             HHHHHHHHhCCCCcCEEEECCCccHHHH----HHHHHcCCEEEEEecCCccCCcCHHHHHHhcCcCCcEEE---eeCCcc
Confidence            44 455566 799999999999999888    5566789999999874      88999999999999888   788999


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCccCCCCcCCccCCCc--cEEEecc--ccccccCCCceeEEEEEcChhHHHHHHHHHH
Q 021783           75 QICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA--DIVMHSA--TKFIAGHSDVMAGVLAVKGERLAKELYFLQN  150 (307)
Q Consensus        75 ~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~--d~~~~s~--~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~  150 (307)
                      ...++++|.++|+++|+++|+|++|+.|........+.  |++++||  +|+++ +.|. +|+++.+++.+.+.+.....
T Consensus       135 ~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~Sf~~~K~l~-~~g~-gg~~~~~~~~l~~~~~~~~~  212 (367)
T 3nyt_A          135 QCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSFFPSAPLG-CYGD-GGAIFTNDDELATAIRQIAR  212 (367)
T ss_dssp             CCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSSSEEEEECCTTSSSC-CSSC-CEEEEESCHHHHHHHHHHTB
T ss_pred             ChhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCCCEEEEECCCCCcCC-CcCc-eeEEEeCCHHHHHHHHHHHh
Confidence            99999999999999999999999999776543333333  9999997  89995 4343 89999987777666655433


Q ss_pred             h------------cCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          151 A------------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       151 ~------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      .            .....+...+......++.++...++..++.+.+.+.|+... +   ..+....         ....
T Consensus       213 ~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~-~---~~~~~~~---------~~~~  279 (367)
T 3nyt_A          213 HGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEYDLSLKQVG-I---GTPFIEV---------NNIS  279 (367)
T ss_dssp             TTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTT-C---CCCCCCT---------TEEC
T ss_pred             cCCCcCceeeccCcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-e---eccCCCC---------CCce
Confidence            2            123455666777777777777667777777788888887652 1   0111000         0011


Q ss_pred             CCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeeccccc-CCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHH
Q 021783          219 AGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM-SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD  297 (307)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~  297 (307)
                      ...++.+.++   +.+.+.+.|..+||.++.+........|... ....++......    ++.+|++++....++.++.
T Consensus       280 ~~~~~~~~~~---~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~lp~~~~~t~~~i~~  352 (367)
T 3nyt_A          280 VYAQYTVRMD---NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAA----TQVMSLPMHPYLDTASIKI  352 (367)
T ss_dssp             CCSSEEEECS---SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHH----HHEEEECCCTTCCHHHHHH
T ss_pred             eeEEEEEEeC---CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHH----hCeEEccCCCCCCHHHHHH
Confidence            1234455555   3667888888899988876542222223221 122232222222    3569999998778888888


Q ss_pred             HHHHHhc
Q 021783          298 LDKALRT  304 (307)
Q Consensus       298 l~~~l~~  304 (307)
                      +.+.+++
T Consensus       353 v~~~~~~  359 (367)
T 3nyt_A          353 ICAALTN  359 (367)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            8887765

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.93  E-value=3.5e-25  Score=200.93  Aligned_cols=125  Identities=19%  Similarity=0.258  Sum_probs=105.8

Q ss_pred             hcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC---------ChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783           10 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---------DLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus        10 ~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      ++++||+|++++|+|.++.    ..++..|++++.++.+         |++++++++++++++|++++|+||||.+++.+
T Consensus       189 l~~~gd~Viv~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~NPtG~~~~~~  264 (533)
T 3f6t_A          189 LLKKGDKIAINEPIFTPYL----RIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTN  264 (533)
T ss_dssp             SSCTTCEEEEESSCCHHHH----TSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTTTCBCCCHH
T ss_pred             ccCCcCEEEEcCCCcHHHH----HHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCCCCccccCHH
Confidence            6899999999999998887    7778889999888863         78999999999999999999999999998755


Q ss_pred             ---HHHHHHH-HcCCEEEEeCccCCCCcC--Cc--cCCCccEEEeccccccccCCCceeEEEEEcCh
Q 021783           81 ---KIAEMAH-AHGALLLVDNSIMSPVLS--RP--LELGADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        81 ---~l~~~~~-~~~~~li~D~a~~~~~~~--~~--~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                         +|+++|+ +||+++|+|++|+.....  ..  ...+.+++++|+||.+ |++|+|+|+++++++
T Consensus       265 ~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~l~~~~~  330 (533)
T 3f6t_A          265 ALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLF-GCTGWRLGVIALNEK  330 (533)
T ss_dssp             HHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHH-TCGGGCEEEEEEESS
T ss_pred             HHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccC-CCcccceEEEEECcH
Confidence               8888888 689999999999743221  11  1225779999999999 678999999999876

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.93  E-value=1.8e-24  Score=190.01  Aligned_cols=246  Identities=14%  Similarity=0.100  Sum_probs=165.4

Q ss_pred             CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcC----CCceEEEEeCCCCCccccccHHHHHHHHH
Q 021783           12 GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKIAEMAH   87 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~~~~~l~~~~~   87 (307)
                      ++||+|+++.++|+++..    .++..|++++.++.+|++++++.++    +++++|++++++||||.+.|+++|.++|+
T Consensus       130 ~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  205 (401)
T 2bwn_A          130 FPGLIIYSDSLNHASMIE----GIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAE  205 (401)
T ss_dssp             STTCEEEEETTCCHHHHH----HHHHSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred             CCCCEEEECchhhHHHHH----HHHHcCCeEEEEcCCCHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHH
Confidence            689999999999998884    4456899999999999999988886    58999999999999999999999999999


Q ss_pred             HcCCEEEEeCccCCCCcC-Cc----c--C--CCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH-Hh-cCCCC
Q 021783           88 AHGALLLVDNSIMSPVLS-RP----L--E--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NA-EGSGL  156 (307)
Q Consensus        88 ~~~~~li~D~a~~~~~~~-~~----~--~--~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~-~~-~~~~~  156 (307)
                      +||+++|+|++|+.+.+. ..    .  .  .+.|++++|+||++++ +   +|+++++++ +.+.+.... .. .....
T Consensus       206 ~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~-~---GG~~~~~~~-~~~~l~~~~~~~~~~~~~  280 (401)
T 2bwn_A          206 EFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGV-F---GGYIAASAR-MVDAVRSYAPGFIFSTSL  280 (401)
T ss_dssp             HHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCS-C---CEEEEECHH-HHHHHHHHCHHHHTSBCC
T ss_pred             HcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccC-C---CCEEecCHH-HHHHHHHhCcCceecCCC
Confidence            999999999999965431 11    0  1  1358999999999954 4   488888744 444443321 11 11222


Q ss_pred             ChhhHHHHhhccccH-----HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHH
Q 021783          157 APFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA  231 (307)
Q Consensus       157 ~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (307)
                      ++..+..+..+++.+     ....++..++.+.+.+.|++. ++        .-.          ...++++++.+++..
T Consensus       281 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~--------~~~----------~~~~~~~~~~~~~~~  341 (401)
T 2bwn_A          281 PPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GM--------PII----------DHGSHIVPVVIGDPV  341 (401)
T ss_dssp             CHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TC--------CBC----------CCSSSCEEEECCCHH
T ss_pred             CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CC--------ccc----------CCCCCeEEEEeCChH
Confidence            333443333443322     344555566666777766643 11        000          012458888887644


Q ss_pred             HHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          232 LSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       232 ~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                      ....+.+.|. .+||.++++..+..                    ..+++++|+|++.    ++++++++.|.++++++
T Consensus       342 ~~~~~~~~L~~~~gi~v~~~~~~~~--------------------~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~  400 (401)
T 2bwn_A          342 HTKAVSDMLLSDYGVYVQPINFPTV--------------------PRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC  400 (401)
T ss_dssp             HHHHHHHHHHHHHCEECCEECTTTS--------------------CTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHhcCCEEEeecCCCCC--------------------CCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence            5778888884 78998876543110                    0123579999985    55666666666665543

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.93  E-value=1.6e-24  Score=190.34  Aligned_cols=275  Identities=18%  Similarity=0.191  Sum_probs=175.2

Q ss_pred             HH-HHHHHh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.++ +++||+|++++++|+++.    ..++..|++++.++.+      |++++++.+++++++|+   ++||||
T Consensus        90 a~~~~l~~~~~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG  162 (399)
T 2oga_A           90 ALQLALRGLGIGPGDEVIVPSHTYIASW----LAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALL---PVHLYG  162 (399)
T ss_dssp             HHHHHHHHTTCCTTCEEEEESSSCTHHH----HHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCTTEEEEC---CBCGGG
T ss_pred             HHHHHHHHhCCCCcCEEEECCCccHHHH----HHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCCCCeEEE---EeCCcC
Confidence            44 455566 789999999999999877    4556789999998853      78999999998888887   568999


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCccCCCCcCCccCCC--ccEEEecc--ccccccCCCceeEEEEEcChhHHHHHHHHHH
Q 021783           75 QICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSA--TKFIAGHSDVMAGVLAVKGERLAKELYFLQN  150 (307)
Q Consensus        75 ~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~d~~~~s~--~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~  150 (307)
                      ...++++|.++|+++|+++|+|++|+.+...+....+  .|++++|+  +|++ +++| ++|+++++++.+.+.+.....
T Consensus       163 ~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~~~sK~~-~~~G-~~g~~~~~~~~~~~~l~~~~~  240 (399)
T 2oga_A          163 HPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNL-GCFG-DGGAVVTGDPELAERLRMLRN  240 (399)
T ss_dssp             CCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETTCTTCEEEEECCTTSSS-CCSS-CCEEEEESCHHHHHHHHHHHB
T ss_pred             CccCHHHHHHHHHHcCCEEEEECcccccCccCCeecccccCEEEEeCCCCccC-CcCC-ceEEEEeCCHHHHHHHHHHHh
Confidence            9999999999999999999999999877533333333  69999999  6999 5556 799999876666555554433


Q ss_pred             hc----------C--CCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          151 AE----------G--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       151 ~~----------~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      ..          +  ...+...++.+..+++.+....+...++.+.+.+.|++.+++.   .+.   .        +..+
T Consensus       241 ~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~---~~~---~--------~~~~  306 (399)
T 2oga_A          241 YGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIG---LPV---T--------APDT  306 (399)
T ss_dssp             TTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCTTCB---CCC---C--------CTTE
T ss_pred             cCccccccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc---ccC---C--------CCCC
Confidence            21          1  1345566666666666665555555666666666665443221   010   0        0000


Q ss_pred             CCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccC----CCCCcHHHHHhcCCCCCeEEEEecc----CC
Q 021783          219 AGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS----HASIPVEVRQARGLTEDLVRISVGI----ED  290 (307)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~iRis~~~----~~  290 (307)
                      .+.++.+.+... ....+.+.|..+||.++.+........|....    ...++....    ..++++||+++.    ++
T Consensus       307 ~~~~~~~~~~~~-~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~lRi~~~~~~t~ed  381 (399)
T 2oga_A          307 DPVWHLFTVRTE-RRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAES----FARQVLSLPIGPHLERPQ  381 (399)
T ss_dssp             ECCCSSEEEECS-SHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHH----HHHHEEEECCSTTCCHHH
T ss_pred             cceeEEEEEECC-CHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHH----HHhCEEEccCCCCCCHHH
Confidence            111112333222 35677788878899887643211110010000    000000000    012579999974    67


Q ss_pred             hHHHHHHHHHHHhcC
Q 021783          291 VNDLISDLDKALRTG  305 (307)
Q Consensus       291 ~~~~i~~l~~~l~~~  305 (307)
                      ++++++.|+++++++
T Consensus       382 i~~~~~~l~~~~~~l  396 (399)
T 2oga_A          382 ALRVIDAVREWAERV  396 (399)
T ss_dssp             HHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            777777777776654

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.93  E-value=1.2e-24  Score=192.45  Aligned_cols=251  Identities=14%  Similarity=0.113  Sum_probs=168.8

Q ss_pred             CCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhc--CCCceEEEEe-CCCCCccccccHH---HHH
Q 021783           14 GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAI--GPWTKLVWVE-SPTNPRQQICDIR---KIA   83 (307)
Q Consensus        14 gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l--~~~~~~v~~~-~~~n~tG~~~~~~---~l~   83 (307)
                      ||+|+++.|+|..+.    ..++..|++++.++.+    |++++++++  .+++++|++. +++||||.+++.+   +|+
T Consensus       124 gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~  199 (423)
T 3ez1_A          124 TPKMIVTVPGYDRHF----LLLQTLGFELLTVDMQSDGPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLA  199 (423)
T ss_dssp             CCEEEEEESCCHHHH----HHHHHHTCEEEEEEEETTEECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHH
T ss_pred             CCEEEEcCCCcHHHH----HHHHHcCCEEEeccCCCCCCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHH
Confidence            599999999998887    5567789999998874    899999999  5789999865 8999999999865   888


Q ss_pred             HHH-HHcCCEEEEeCccCCCCcC--------Cc-------cCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH
Q 021783           84 EMA-HAHGALLLVDNSIMSPVLS--------RP-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF  147 (307)
Q Consensus        84 ~~~-~~~~~~li~D~a~~~~~~~--------~~-------~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~  147 (307)
                      ++| ++||+++|+|++|+...+.        ..       ...+.+++++|+||++ + +|+|+|+++.+++ +.+.+..
T Consensus       200 ~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~-~G~r~G~~~~~~~-~~~~~~~  276 (423)
T 3ez1_A          200 GLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKIT-F-AGAGLGFVASSED-NIRWLSK  276 (423)
T ss_dssp             TCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTS-C-SSSSCEEEEECHH-HHHHHHH
T ss_pred             HHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhc-c-CCcceEEEEeCHH-HHHHHHH
Confidence            888 8999999999999842211        11       2446889999999984 3 4889999999854 5555655


Q ss_pred             HHHhcCCCCChhhHHHHhhcccc--------HHHHHHHHHHHHHHHHHHHhcC-CCcc-EEecCCCCCCCchHHHhhhcc
Q 021783          148 LQNAEGSGLAPFDCWICLRGVKT--------MALRVEKQQDNAQKIAEFLASH-PRVK-KVNYAGLPEHPGHELHYSQAK  217 (307)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~l~~~l~~~-~~~~-~~~~~~l~~~~~~~~~~~~~~  217 (307)
                      .........+...+..+...++.        +....+.+.++.+.+.+.+.+. +.+. .+...             . .
T Consensus       277 ~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-------------~-p  342 (423)
T 3ez1_A          277 YLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWT-------------L-P  342 (423)
T ss_dssp             HHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEEC-------------C-C
T ss_pred             HHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEe-------------C-C
Confidence            55555545555555444433332        1122223333444444444331 1110 00000             0 1


Q ss_pred             CCCceEEEEeCCHHHHHHHHhcCCcceeecCC-CCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc---CChHH
Q 021783          218 GAGSVLSFLTGSLALSKHVVETTKYFSITVSF-GSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVND  293 (307)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~-g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~  293 (307)
                      ..+.++++.+++. ....+.+.+.++||.+++ |..|..-                  .+..++++|||++.   +++++
T Consensus       343 ~~g~~~~~~~~~~-~~~~~~~~l~~~gv~v~~~g~~~~~~------------------~~~~~~~iRis~~~~~~~~i~~  403 (423)
T 3ez1_A          343 KGGYFISLDTAEP-VADRVVKLAEAAGVSLTPAGATYPAG------------------QDPHNRNLRLAPTRPPVEEVRT  403 (423)
T ss_dssp             SBSSCEEEEESSS-CHHHHHHHHHHTTEECCCTTTTSSTT------------------CCSSSCEEEECCSSSCHHHHHH
T ss_pred             CccEEEEEECCCC-cHHHHHHHHHHCCcEEecCcccccCC------------------CCCCCCeEEEEcCCCCHHHHHH
Confidence            2466788888654 367778888889999998 5442210                  01236789999985   67778


Q ss_pred             HHHHHHHHHhc
Q 021783          294 LISDLDKALRT  304 (307)
Q Consensus       294 ~i~~l~~~l~~  304 (307)
                      .++.|.+++++
T Consensus       404 ~~~~l~~~l~~  414 (423)
T 3ez1_A          404 AMQVVAACIRL  414 (423)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888887754

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.93  E-value=1.3e-24  Score=193.48  Aligned_cols=270  Identities=14%  Similarity=0.091  Sum_probs=173.4

Q ss_pred             HH-HHHHHhcCCCC--------------eEEEc-CCCCcchHHHHh--hhcccCCcEEEEecC----------CChHHHH
Q 021783            3 AL-AAVTHLLGTGE--------------EIVAG-DDLYGGTDRLLS--RVTPKTGVVVKRVNT----------CDLDEVA   54 (307)
Q Consensus         3 al-~~~~~~~~~gd--------------~Vlv~-~~~~~~~~~~~~--~~~~~~g~~~~~v~~----------~d~~~l~   54 (307)
                      |+ .++.+++++||              +|+++ +|+|+.+.....  ......|..++.++.          .|+++++
T Consensus       118 al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~  197 (444)
T 3if2_A          118 AFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALE  197 (444)
T ss_dssp             HHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHH
T ss_pred             HHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecccccccCccccCCCHHHHH
Confidence            44 44556778888              78876 899987762110  034567888887773          3899999


Q ss_pred             hh---cCCCceEEEEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCc-----C-CccCCCccEEEeccccc
Q 021783           55 SA---IGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL-----S-RPLELGADIVMHSATKF  122 (307)
Q Consensus        55 ~~---l~~~~~~v~~~~~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~-----~-~~~~~~~d~~~~s~~K~  122 (307)
                      ++   +.+++++|++++|+||||.+++   +++|+++|++||+++|+|++|+.+..     . .....+.+++++|+||+
T Consensus       198 ~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~  277 (444)
T 3if2_A          198 NLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI  277 (444)
T ss_dssp             TCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT
T ss_pred             HHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhc
Confidence            98   6789999999999999999998   88999999999999999999984321     1 12234789999999996


Q ss_pred             cccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhcccc--HH----H-HHHHHHHHHHHHHHHHhcC-CC
Q 021783          123 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT--MA----L-RVEKQQDNAQKIAEFLASH-PR  194 (307)
Q Consensus       123 ~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~----~-~~~~~~~~~~~l~~~l~~~-~~  194 (307)
                        +.+|+++|+++.+++ +.+.+.......+...+...+..+...++.  +.    . ..+.+.++.+.+.+.+++. +.
T Consensus       278 --~~~G~r~G~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  354 (444)
T 3if2_A          278 --GLPGMRTGIIVADAK-VIEAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGD  354 (444)
T ss_dssp             --TCGGGCCEEEECCHH-HHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             --cCCCCceEEEEECHH-HHHHHHHHHHhccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence              457899999998744 555555544443333333334433333321  11    1 1223344555555555542 21


Q ss_pred             cc-EEecCCCCCCCchHHHhhhccCCCceEEEEeCC-HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHH
Q 021783          195 VK-KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR  272 (307)
Q Consensus       195 ~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~  272 (307)
                      +. .+..                ...+.++++.++. ......+.+.|.++||.+++|..|..-...    . .      
T Consensus       355 ~~~~~~~----------------~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~----~-~------  407 (444)
T 3if2_A          355 YPLMIHK----------------PEGAIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDV----S-D------  407 (444)
T ss_dssp             SSEEEEC----------------CCBSSEEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCC----T-T------
T ss_pred             CCceEec----------------CCccEEEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCC----c-c------
Confidence            10 1100                1235677777764 223677888888899999988764311000    0 0      


Q ss_pred             HhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 021783          273 QARGLTEDLVRISVGI--EDVNDLISDLDKALRT  304 (307)
Q Consensus       273 ~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  304 (307)
                        ....++++|||++.  +++++.++.|.+++++
T Consensus       408 --~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~  439 (444)
T 3if2_A          408 --YQHAHECIRMSIAADEQTLIDGIKVIGEVVRE  439 (444)
T ss_dssp             --CSGGGSEEEEESSSCHHHHHHHHHHHHHHHHH
T ss_pred             --cccCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence              00024689999986  5677777777777654

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.92  E-value=6.1e-25  Score=193.02  Aligned_cols=259  Identities=16%  Similarity=0.159  Sum_probs=162.2

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcE-EEEecCCChHHHHhhcC--CCceEEEEeCCCCCcccccc-
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV-VKRVNTCDLDEVASAIG--PWTKLVWVESPTNPRQQICD-   78 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~-~~~v~~~d~~~l~~~l~--~~~~~v~~~~~~n~tG~~~~-   78 (307)
                      ++.++..++++||+|++++|+|+++.    ..++..|++ ++.+|.++.+.+...+.  +++++|++++|+||||.+++ 
T Consensus       107 al~~~~~~~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~nptG~~~~~  182 (400)
T 3asa_A          107 DLFRLLSFFGPNQTVAIQDPSYPAYL----DIARLTGAKEIIALPCLQENAFFPEFPEDTHIDILCLCSPNNPTGTVLNK  182 (400)
T ss_dssp             HHHHHHHHHCSSCEEEEEESCCHHHH----HHHHHTTCSEEEEEECCGGGTTCCCCCTTCCCSEEEEESSCTTTCCCCCH
T ss_pred             HHHHHHHHcCCCCEEEECCCCcHHHH----HHHHHcCCcceEecccchhcCcccChhhccCccEEEEeCCCCCCCCcCCH
Confidence            45455566789999999999998877    455667888 88888752111111121  57899999999999999987 


Q ss_pred             --HHHHHHHHHHcCCEEEEeCccCC----CCc-CCccCC----CccEEEeccccccccCCCceeEEEEEcChh-------
Q 021783           79 --IRKIAEMAHAHGALLLVDNSIMS----PVL-SRPLEL----GADIVMHSATKFIAGHSDVMAGVLAVKGER-------  140 (307)
Q Consensus        79 --~~~l~~~~~~~~~~li~D~a~~~----~~~-~~~~~~----~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~-------  140 (307)
                        +++|+++|+++|+++|+|++|+.    +.. .....+    +.+++++|+||++ |.+|+|+|+++++++.       
T Consensus       183 ~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~GlriG~~~~~~~~~~~~~~~  261 (400)
T 3asa_A          183 DQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPL-GFAGIRLGWTVIPQELTYADGHF  261 (400)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGG-TTTTCCCEEEECCTTCBCTTSCB
T ss_pred             HHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhc-CCcchheeEEeeChhhccchhhh
Confidence              67889999999999999999973    211 122222    3569999999999 6679999999998765       


Q ss_pred             HHHHHHHHHHhcCCCCChhhHHHHhhccc--cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          141 LAKELYFLQNAEGSGLAPFDCWICLRGVK--TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      +.............+.+...+..+...++  .++...+.+.++.+.+.+.|++. ++ .+..                ..
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~----------------~~  323 (400)
T 3asa_A          262 VIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT-GF-EVFG----------------GE  323 (400)
T ss_dssp             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT-TC-EEEE----------------CS
T ss_pred             HHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC-CC-eeeC----------------CC
Confidence            33333222222222334443433333332  22333455566667777777654 22 1111                11


Q ss_pred             CCceEEEE-eCCHHHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec--cCChHHH
Q 021783          219 AGSVLSFL-TGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--IEDVNDL  294 (307)
Q Consensus       219 ~~~~~~~~-~~~~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~--~~~~~~~  294 (307)
                      .+.++++. ++...+..++.+.+. ..||.+++|..|...                     .++++|||+.  .+++++.
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~---------------------~~~~iRis~~~~~e~i~~~  382 (400)
T 3asa_A          324 HAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRS---------------------GSGFVRFSSLGKREDILAA  382 (400)
T ss_dssp             SSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGG---------------------GTTCEEEECCSCHHHHHHH
T ss_pred             CceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCC---------------------CCCEEEEEeeCCHHHHHHH
Confidence            35677887 643222345555554 459998887753210                     2467999953  2677777


Q ss_pred             HHHHHHHHhcC
Q 021783          295 ISDLDKALRTG  305 (307)
Q Consensus       295 i~~l~~~l~~~  305 (307)
                      ++.|.+++++.
T Consensus       383 l~~l~~~~~~~  393 (400)
T 3asa_A          383 CERLQMAPALQ  393 (400)
T ss_dssp             HHHHHC-----
T ss_pred             HHHHHHHHHhh
Confidence            77777776543

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.92  E-value=3.2e-24  Score=189.31  Aligned_cols=267  Identities=13%  Similarity=0.113  Sum_probs=169.1

Q ss_pred             HH-HHHHHhcCCCC-----eEEEc-CCCCcchHHHHhh--hcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEe
Q 021783            3 AL-AAVTHLLGTGE-----EIVAG-DDLYGGTDRLLSR--VTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVE   67 (307)
Q Consensus         3 al-~~~~~~~~~gd-----~Vlv~-~~~~~~~~~~~~~--~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~   67 (307)
                      |+ .++..++++||     +|+++ +|+|+.+......  .....+..+..++.+      |+++++  +++++++++++
T Consensus       110 al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~v~~~  187 (417)
T 3g7q_A          110 AFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IGEETGMICVS  187 (417)
T ss_dssp             HHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CCTTEEEEEEE
T ss_pred             HHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--cccCceEEEEC
Confidence            45 34556788987     99997 9999877632211  123345566666543      788887  67889999999


Q ss_pred             CCCCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCc-----C-CccCCCccEEEeccccccccCCCceeEEEEEcC
Q 021783           68 SPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL-----S-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKG  138 (307)
Q Consensus        68 ~~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~-----~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~  138 (307)
                      +|+||||.+++   +++|+++|++||+++|+|++|+.+..     . .+...+.+++++|+|| + +.+|+|+|+++.++
T Consensus       188 ~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~-~~~G~r~G~~~~~~  265 (417)
T 3g7q_A          188 RPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSK-L-GLPGSRCGIIIAND  265 (417)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGG-G-TCTTSCCEEEECCH
T ss_pred             CCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCEEEEEechh-c-cCCCcceEEEEeCH
Confidence            99999999998   89999999999999999999974221     1 2233578999999999 5 56799999998864


Q ss_pred             hhHHHHHHHHHHhcCCCCChhhHHHHhhcccc--HHH-----HHHHHHHHHHHHHHHHhcC-CCcc-EEecCCCCCCCch
Q 021783          139 ERLAKELYFLQNAEGSGLAPFDCWICLRGVKT--MAL-----RVEKQQDNAQKIAEFLASH-PRVK-KVNYAGLPEHPGH  209 (307)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~-----~~~~~~~~~~~l~~~l~~~-~~~~-~~~~~~l~~~~~~  209 (307)
                       .+.+.+...........+...+..+...++.  +..     ..+.+.++.+.+.+.+++. +.+. .+..         
T Consensus       266 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---------  335 (417)
T 3g7q_A          266 -KTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHK---------  335 (417)
T ss_dssp             -HHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEEC---------
T ss_pred             -HHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeC---------
Confidence             4555555555544444444444443333321  111     2233445555566666542 2110 1111         


Q ss_pred             HHHhhhccCCCceEEEEeCC-HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc
Q 021783          210 ELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  288 (307)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~  288 (307)
                             ...+.++++.++. ..+...+.+.+.++||.+++|..|..-...      .        .+..++++|||++.
T Consensus       336 -------~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~------~--------~~~~~~~iRis~~~  394 (417)
T 3g7q_A          336 -------PEGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDK------P--------WPHTHQCMRMNYVP  394 (417)
T ss_dssp             -------CCBSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTBSS------C--------CGGGGGEEEEESCS
T ss_pred             -------CCcceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCCcc------c--------cccCCCeEEEEecC
Confidence                   1235677777764 223677888888889999988764311000      0        00014689999986


Q ss_pred             --CChHHHHHHHHHHHhc
Q 021783          289 --EDVNDLISDLDKALRT  304 (307)
Q Consensus       289 --~~~~~~i~~l~~~l~~  304 (307)
                        +++++.++.|.+++++
T Consensus       395 ~~~~i~~~~~~l~~~l~~  412 (417)
T 3g7q_A          395 EPDKIEAGVKILAEEIER  412 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence              5677777777777654

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.92  E-value=4e-24  Score=187.04  Aligned_cols=227  Identities=17%  Similarity=0.223  Sum_probs=160.6

Q ss_pred             HH-HHHHHh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.++ +++||+|+++.++|+++.    ..++..|++++.++.+      |++++++.+++++++|+   |+||||
T Consensus        65 al~~~l~~l~~~~gd~Vi~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG  137 (388)
T 1b9h_A           65 ALELALQVMGVGPGTEVIVPAFTFISSS----QAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIM---PVHMAG  137 (388)
T ss_dssp             HHHHHHHHTTCCTTCEEEEESSSCTHHH----HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEEC---CBCGGG
T ss_pred             HHHHHHHHcCCCCcCEEEECCCccHHHH----HHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcCceEEE---EeCCcc
Confidence            44 455566 789999999999999988    5567789999999863      78999999988888877   899999


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCccCCCCcC---CccCCCccEEEeccc--cccccCCCceeEEEEEcChhH--HHHHHH
Q 021783           75 QICDIRKIAEMAHAHGALLLVDNSIMSPVLS---RPLELGADIVMHSAT--KFIAGHSDVMAGVLAVKGERL--AKELYF  147 (307)
Q Consensus        75 ~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~---~~~~~~~d~~~~s~~--K~~~g~~g~~~G~~~~~~~~~--~~~~~~  147 (307)
                      .+.++++|.++|++||+++|+|++|+.|...   ....++ |+.++|||  |+++|+   ++|+++++++.+  .+.+..
T Consensus       138 ~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~-~i~~~S~s~~K~l~g~---~~G~~~~~~~~~~~~~~~~~  213 (388)
T 1b9h_A          138 LMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELD-SIATFSFQNGKLMTAG---EGGAVVFPDGETEKYETAFL  213 (388)
T ss_dssp             CCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSS-SCEEEECCTTSSSCSS---SCEEEEECTTCHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeeccccc-ceEEEEccCCCcccCC---CeEEEEECCHHHHHHHHHHH
Confidence            9999999999999999999999999976643   222333 67777776  666432   589999987645  333332


Q ss_pred             HHHhc-------------CC--CCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHH
Q 021783          148 LQNAE-------------GS--GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  212 (307)
Q Consensus       148 ~~~~~-------------~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~  212 (307)
                      .....             +.  .++....+.....++.+....++..++.+.+.+.|++.+++ .+..+. ..       
T Consensus       214 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~-~~-------  284 (388)
T 1b9h_A          214 RHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWTLLSRLLGAIDGV-VPQGGD-VR-------  284 (388)
T ss_dssp             HTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTC-EECCCC-TT-------
T ss_pred             HHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-cccCCC-cC-------
Confidence            22110             11  23445555556667777777777888888888888866443 111100 00       


Q ss_pred             hhhccCCCceEEEEeCCH--HHHHHHHhcCCcceeecCCCC
Q 021783          213 YSQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGS  251 (307)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~  251 (307)
                        ..+..+.++++.+++.  .....+.+.|..+||.++.+.
T Consensus       285 --~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~  323 (388)
T 1b9h_A          285 --ADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAF  323 (388)
T ss_dssp             --CCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECC
T ss_pred             --CCccceEEEEEEeCCcCcccHHHHHHHHHHCCCCccccc
Confidence              0012356888888653  247788888888899887654

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.92  E-value=1.2e-23  Score=184.17  Aligned_cols=277  Identities=17%  Similarity=0.173  Sum_probs=182.2

Q ss_pred             HH-HHHHHh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.++ +++||+|++++++|+++.    ..++..|++++.++.+      |++++++.+++++++|+   ++||||
T Consensus        83 al~~~l~~~~~~~gd~vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~tG  155 (391)
T 3dr4_A           83 ALHLALVAMGIGPGDEVIVPSLTYIASA----NSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIM---PVHLYG  155 (391)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESSSCTHHH----HHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCTTEEEEC---CBCGGG
T ss_pred             HHHHHHHHcCCCCcCEEEECCCchHHHH----HHHHHCCCEEEEEecCccccCcCHHHHHHhcCCCceEEE---EECCCC
Confidence            44 455566 899999999999999988    4566789999999875      88999999998899888   568999


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCccCCCCcCCccCCC--ccEEEeccc--cccccCCCceeEEEEEcChhHHHHHHHHHH
Q 021783           75 QICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSAT--KFIAGHSDVMAGVLAVKGERLAKELYFLQN  150 (307)
Q Consensus        75 ~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~d~~~~s~~--K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~  150 (307)
                      ...|+++|.++|+++|+++|+|++|+.|........+  .|+.+.||+  |++++ .  ++|+++.+++.+.+.+.....
T Consensus       156 ~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~~K~l~~-g--~gg~~~~~~~~~~~~~~~~~~  232 (391)
T 3dr4_A          156 QICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITT-G--EGGMITTNDDDLAAKMRLLRG  232 (391)
T ss_dssp             CCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECBTTSSSCC-B--SCEEEEESCHHHHHHHHHHHB
T ss_pred             ChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecccCCEEEEECCCCCcCCc-C--CeEEEEECCHHHHHHHHHHHh
Confidence            9999999999999999999999999987654222111  367777755  99854 2  389998887777666655443


Q ss_pred             hcC--------------CCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhc
Q 021783          151 AEG--------------SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  216 (307)
Q Consensus       151 ~~~--------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~  216 (307)
                      ...              .......+.+....++.++...++..++.+.+.+.|++. ++.........          ..
T Consensus       233 ~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~----------~~  301 (391)
T 3dr4_A          233 QGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARL-GNRVTKPHVAL----------TG  301 (391)
T ss_dssp             TTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCT----------TS
T ss_pred             cCCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCC----------CC
Confidence            221              223344444444445556666666677777777777755 32111110000          00


Q ss_pred             cCCCceEEEEeCC--HHHHHHHHhcCCcceeecCCCCccceeecccccC--CCCCcHHHHHhcCCCCCeEEEEeccCChH
Q 021783          217 KGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISMPCFMS--HASIPVEVRQARGLTEDLVRISVGIEDVN  292 (307)
Q Consensus       217 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~iRis~~~~~~~  292 (307)
                      .....++++.+++  ......+.+.|..+||.++.|... ..+.|....  ...++.....    .++.+|++++....+
T Consensus       302 ~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~~p-~~~~~~~~~~~~~~~~~~~~~----~~~~lrl~~~~~~t~  376 (391)
T 3dr4_A          302 RHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHP-MHIMPPYAHLATDDLKIAEAC----GVDGLNLPTHAGLTE  376 (391)
T ss_dssp             CCCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECCCC-GGGSGGGGGGCCTTCHHHHHH----HHHEEEECCCTTCCH
T ss_pred             cceeEEEEEEECCccchhHHHHHHHHHHCCCceeecCCc-cccChhhhhcCcCCChHHHHH----HhCeEEccCCCCCCH
Confidence            1123456777754  233778888888889999876531 122222111  1222222211    135699999887777


Q ss_pred             HHHHHHHHHHhcC
Q 021783          293 DLISDLDKALRTG  305 (307)
Q Consensus       293 ~~i~~l~~~l~~~  305 (307)
                      +.++.+.++|++.
T Consensus       377 edi~~~~~~l~~~  389 (391)
T 3dr4_A          377 ADIDRVIAALDQV  389 (391)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777776653

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.92  E-value=4.3e-24  Score=188.64  Aligned_cols=250  Identities=15%  Similarity=0.138  Sum_probs=163.4

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCC----Cce-EEEEeCC-
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGP----WTK-LVWVESP-   69 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~----~~~-~v~~~~~-   69 (307)
                      |+ .++.++++|||+|++++|+|+++.    ..++..|++++.++.+      |++++++.+++    +++ ++++++| 
T Consensus       114 al~~~~~~l~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~  189 (418)
T 3rq1_A          114 GIHHLIHNYTEPGDEVLTADWYWGAYR----VICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPG  189 (418)
T ss_dssp             HHHHHHHHHSCTTCEEEEESSCCTHHH----HHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSS
T ss_pred             HHHHHHHHhcCCCCEEEECCCCchhHH----HHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCC
Confidence            45 455668899999999999998887    5677889999999862      78999988873    566 7888899 


Q ss_pred             CCCccccccH---HHHHHHHH------HcCCEEEEeCccCCCCcC---------CccCCCc---cEEEeccccccccCCC
Q 021783           70 TNPRQQICDI---RKIAEMAH------AHGALLLVDNSIMSPVLS---------RPLELGA---DIVMHSATKFIAGHSD  128 (307)
Q Consensus        70 ~n~tG~~~~~---~~l~~~~~------~~~~~li~D~a~~~~~~~---------~~~~~~~---d~~~~s~~K~~~g~~g  128 (307)
                      +||||.+++.   ++|+++|+      +||+++|+|++|......         .....+.   .++++|+||.+ |.+|
T Consensus       190 ~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~~~G  268 (418)
T 3rq1_A          190 NNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGF-TMYG  268 (418)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTT-TCCS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCC-cCcC
Confidence            9999999985   45556666      899999999999532211         1111112   38899999999 6779


Q ss_pred             ceeEEEEE--cChhHHHHHHHHHHh----cCCCCChhhHHHHhhccccH------H----HHHHHHHHHHHHHHHHHhcC
Q 021783          129 VMAGVLAV--KGERLAKELYFLQNA----EGSGLAPFDCWICLRGVKTM------A----LRVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       129 ~~~G~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~------~----~~~~~~~~~~~~l~~~l~~~  192 (307)
                      +|+|++++  +++.+.+.+......    ..+..+...+..+...++..      .    ...+.+.++.+.+.+.+++.
T Consensus       269 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  348 (418)
T 3rq1_A          269 QRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV  348 (418)
T ss_dssp             SCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999998  235555555443322    12334445555554444332      1    11233344444555555432


Q ss_pred             CCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHH
Q 021783          193 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR  272 (307)
Q Consensus       193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~  272 (307)
                       +        ++-.        . ...+.++++.+.   +..++.+.|.++||.+.+|.                     
T Consensus       349 -g--------~~~~--------~-~~~~~~~~~~~~---~~~~~~~~l~~~gi~v~~g~---------------------  386 (418)
T 3rq1_A          349 -G--------LPML--------P-YRGGFFITIPTD---SANAICEELKKEHIYVIALA---------------------  386 (418)
T ss_dssp             -T--------CCCC--------C-CCSSSEEEEECT---THHHHHHHHHHTTEECEECS---------------------
T ss_pred             -C--------CCCC--------C-CCceEEEEcCCC---CHHHHHHHHHhCCEEEecCC---------------------
Confidence             1        1111        0 112334445554   24566677777899887642                     


Q ss_pred             HhcCCCCCeEEEEecc---CChHHHHHHHHHHHhcCC
Q 021783          273 QARGLTEDLVRISVGI---EDVNDLISDLDKALRTGP  306 (307)
Q Consensus       273 ~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~~~  306 (307)
                             +++|||++.   +++++.++.|.++++++.
T Consensus       387 -------~~iRis~~~~~~~~i~~~~~~l~~~l~~~~  416 (418)
T 3rq1_A          387 -------NGIRIAACGIPKCQMTGLAEKIYNAMKSLG  416 (418)
T ss_dssp             -------SEEEEEGGGSCHHHHTTHHHHHHHHHHHTT
T ss_pred             -------CCeEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence                   349999873   788889999999887653

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.92  E-value=8.1e-25  Score=188.52  Aligned_cols=250  Identities=18%  Similarity=0.186  Sum_probs=160.8

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCC------CceEEEEeCCCCCc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP------WTKLVWVESPTNPR   73 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~------~~~~v~~~~~~n~t   73 (307)
                      .++.++++|||+|++++|+|.+.+... ..+...|++++.+ .+     |++++++++++      ++++|++++|+|||
T Consensus        68 ~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt  145 (347)
T 1jg8_A           68 VSIMAHTQRGDEVILEADSHIFWYEVG-AMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRS  145 (347)
T ss_dssp             HHHHHHCCTTCEEEEETTCHHHHSSTT-HHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTT
T ss_pred             HHHHHhcCCCCEEEEcCcchhhhcccc-chhhccCeEEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEecccccc
Confidence            455667899999999999997654110 1345678998888 42     89999999974      68999999999999


Q ss_pred             -ccccc---HHHHHHHHHHcCCEEEEeCccCCCC---cC-Ccc--CCCccEEEeccccccccCCCceeEEEEEcChhHHH
Q 021783           74 -QQICD---IRKIAEMAHAHGALLLVDNSIMSPV---LS-RPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        74 -G~~~~---~~~l~~~~~~~~~~li~D~a~~~~~---~~-~~~--~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~  143 (307)
                       |.+++   +++|.++|++||+++|+|++|..+.   .. ...  ..+.|.++.|+||+++++.   +|+++.+ +.+.+
T Consensus       146 ~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~---G~~~~~~-~~~~~  221 (347)
T 1jg8_A          146 GGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPV---GSVVVGD-RDFIE  221 (347)
T ss_dssp             TSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSS---CEEEEEC-HHHHH
T ss_pred             CCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCCc---eEEEEcC-HHHHH
Confidence             99876   5789999999999999999874321   11 111  1357888899999996542   4456655 44444


Q ss_pred             HHHHHHHhcCCC--CChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCc
Q 021783          144 ELYFLQNAEGSG--LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS  221 (307)
Q Consensus       144 ~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (307)
                      .+.......+..  .....+.....+++....++++..++.+.+.+.|++. ++. +.             ..  +..++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~-------------~~--~~~~~  284 (347)
T 1jg8_A          222 RARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEI-GYS-VN-------------PE--DVKTN  284 (347)
T ss_dssp             HHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHH-TCB-CC-------------GG--GCCSS
T ss_pred             HHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cce-ec-------------cC--CCcce
Confidence            444333333322  2333344433344322222334445666677777643 110 00             00  11366


Q ss_pred             eEEEEeCC-HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHH
Q 021783          222 VLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLIS  296 (307)
Q Consensus       222 ~~~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~  296 (307)
                      ++++.+++ ..+..++.+.|..+||.++.+.                           ++++|++++.    ++++++++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~---------------------------~~~iRl~~~~~~~~e~i~~~~~  337 (347)
T 1jg8_A          285 MVILRTDNLKVNAHGFIEALRNSGVLANAVS---------------------------DTEIRLVTHKDVSRNDIEEALN  337 (347)
T ss_dssp             EEEEECTTSSSCHHHHHHHHHHHTEECEEEE---------------------------TTEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEcccccCCHHHHHHHHHHCCCEEecCC---------------------------CCeEEEEeCCCCCHHHHHHHHH
Confidence            78888863 2236778888888899776421                           3459999963    67777777


Q ss_pred             HHHHHHhc
Q 021783          297 DLDKALRT  304 (307)
Q Consensus       297 ~l~~~l~~  304 (307)
                      .|.+++++
T Consensus       338 ~l~~~l~~  345 (347)
T 1jg8_A          338 IFEKLFRK  345 (347)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77777654

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.92  E-value=2e-24  Score=195.67  Aligned_cols=249  Identities=18%  Similarity=0.175  Sum_probs=173.6

Q ss_pred             HHHHHhcCCC--------CeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCC
Q 021783            5 AAVTHLLGTG--------EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTN   71 (307)
Q Consensus         5 ~~~~~~~~~g--------d~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n   71 (307)
                      .++.++.++|        |+|+++.++|+++.    ..++..|++++.++.+     |+++|++++++++++|++++++|
T Consensus       175 ~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~----~~~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~n  250 (514)
T 3mad_A          175 LAMKTYRDWARATKGITAPEAVVPVSAHAAFD----KAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGY  250 (514)
T ss_dssp             HHHHHHHHHHHHHHCCSSCEEEEETTSCTHHH----HHHHHHTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCT
T ss_pred             HHHHHHHHHhhhhcCCCCCeEEEeCccchHHH----HHHHHcCCeeEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCC
Confidence            4444555555        99999999999877    6667789999999976     89999999999999999999999


Q ss_pred             CccccccHHHHHHHHHHcCCEEEEeCccCCCCc-----------C-CccCCCccEEEeccccccccCCCceeEEEEEcCh
Q 021783           72 PRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-----------S-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        72 ~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~-----------~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      |||.+.|+++|.++|++||+++|+|++|+.+..           + +....|+|++++|+||+++++.+  +|+++++++
T Consensus       251 ptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~--~g~~~~~~~  328 (514)
T 3mad_A          251 PHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKG--TSVILYRRP  328 (514)
T ss_dssp             TTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSS--CEEEEESSH
T ss_pred             CCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCC--eEEEEEeCH
Confidence            999999999999999999999999999985432           1 33456899999999999766665  899999877


Q ss_pred             hHHHHHHHHH-Hhc---------CCCCCh---hhHHHHhhcc--ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCC
Q 021783          140 RLAKELYFLQ-NAE---------GSGLAP---FDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP  204 (307)
Q Consensus       140 ~~~~~~~~~~-~~~---------~~~~~~---~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~  204 (307)
                      .......... .+.         ..+...   ...+.++..+  ..+....++..++++.+.+.|++.+++.        
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~--------  400 (514)
T 3mad_A          329 DLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLK--------  400 (514)
T ss_dssp             HHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCE--------
T ss_pred             HHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeE--------
Confidence            5543211000 000         011111   2233333222  2334556667777778888887654321        


Q ss_pred             CCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEE
Q 021783          205 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI  284 (307)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRi  284 (307)
                            +..+    ..++++|...+.+ ..++.+.|..+||.+ .|..                         .++++|+
T Consensus       401 ------~~~~----~~~~~~~~~~~~~-~~~l~~~L~~~Gi~v-~g~~-------------------------~~~~~Ri  443 (514)
T 3mad_A          401 ------ILGD----PLWVIAVASDELN-IYQVMEEMAGRGWRL-NGLH-------------------------RPPAFHV  443 (514)
T ss_dssp             ------ESSC----CSSEEEEECSSSC-HHHHHHHHHTTTCBC-EEET-------------------------TTTEEEE
T ss_pred             ------EeCC----CeEEEEEeCCCCC-HHHHHHHHHhcCCEe-ccCC-------------------------CCCeEEE
Confidence                  1100    1347777765443 677888888888866 2211                         1345999


Q ss_pred             Eec-----cCChHHHHHHHHHHHhc
Q 021783          285 SVG-----IEDVNDLISDLDKALRT  304 (307)
Q Consensus       285 s~~-----~~~~~~~i~~l~~~l~~  304 (307)
                      +++     .++++++++.|.+++++
T Consensus       444 ~~~~~~~~~e~i~~~l~~L~~~l~~  468 (514)
T 3mad_A          444 ALTLRHTEPGVVDRFLADLQDAVAQ  468 (514)
T ss_dssp             ECCGGGGSTTHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCHHHHHHHHHHHHHHHHH
Confidence            997     26888899998888754

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.86  E-value=9.2e-27  Score=204.08  Aligned_cols=261  Identities=13%  Similarity=0.142  Sum_probs=168.6

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC--------CChHHHHhhcC-CCceEEEEeCCCCC
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIG-PWTKLVWVESPTNP   72 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~--------~d~~~l~~~l~-~~~~~v~~~~~~n~   72 (307)
                      |+ .++.+++++||+|+++.|+|+++.    ..++..|++++.++.        .|++++++.++ ++++++++++|+||
T Consensus       101 a~~~~~~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~np  176 (392)
T 3b1d_A          101 AISIAIQAFTKEGEAVLINSPVYPPFA----RSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNP  176 (392)
Confidence            44 344556789999999999999887    667788999888876        26788888887 68899999999999


Q ss_pred             cccccc---HHHHHHHHHHcCCEEEEeCccCCCCc--------CCccC--CCccEEEeccccccccCCCceeEEEEEcCh
Q 021783           73 RQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL--------SRPLE--LGADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        73 tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~--------~~~~~--~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      ||.+++   +++|.++|++||+++|+|++|+....        .....  .+.+++++|+||++ +.+|+|+|+++++++
T Consensus       177 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~  255 (392)
T 3b1d_A          177 GGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTF-NIAGTKNSYAIIENP  255 (392)
Confidence            999986   89999999999999999999975321        11112  46789999999999 667889999999765


Q ss_pred             hHHHHHHHHHHhcC-CCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCC-CCchHHHhhhcc
Q 021783          140 RLAKELYFLQNAEG-SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE-HPGHELHYSQAK  217 (307)
Q Consensus       140 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~-~~~~~~~~~~~~  217 (307)
                      .+.+.+........ ...+...+..+...++......       +++.+.++++.   ......++. .|++....    
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~-------~~~~~~~~~~~---~~l~~~l~~~~~~~~~~~----  321 (392)
T 3b1d_A          256 TLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWL-------VALKAVLEENI---QFAVEYFAQEAPRLKVMK----  321 (392)
Confidence            45554444333221 1223334444444443211111       11111111111   111222322 33333321    


Q ss_pred             CCCceE-EEEeCCH-HHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChH
Q 021783          218 GAGSVL-SFLTGSL-ALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVN  292 (307)
Q Consensus       218 ~~~~~~-~~~~~~~-~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~  292 (307)
                      ..++++ ++.++.. .....+.+.|. ++||.+.+|..|..                     ..++++||+++.  ++++
T Consensus       322 ~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~---------------------~~~~~iRi~~~~~~e~i~  380 (392)
T 3b1d_A          322 PQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGS---------------------EGELHARLNIAAPKSLVE  380 (392)
Confidence            123443 4666532 23667888885 78999988776321                     125679999975  6777


Q ss_pred             HHHHHHHHHHh
Q 021783          293 DLISDLDKALR  303 (307)
Q Consensus       293 ~~i~~l~~~l~  303 (307)
                      +.++.|.++++
T Consensus       381 ~~l~~l~~~l~  391 (392)
T 3b1d_A          381 EICKRIVCCLP  391 (392)
Confidence            77777777664

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.92  E-value=5e-25  Score=192.88  Aligned_cols=261  Identities=16%  Similarity=0.105  Sum_probs=162.1

Q ss_pred             HH-HHHHHhcCCCC----eEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccc
Q 021783            3 AL-AAVTHLLGTGE----EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         3 al-~~~~~~~~~gd----~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~   77 (307)
                      |+ .++.+++++||    +|++++|+|+++.    ..++..|++++.++.+ .+.++   .+++++|++++|+||||.++
T Consensus       103 al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~----~~~~~~g~~~~~~~~d-~~~l~---~~~~k~v~l~~p~NPtG~~~  174 (391)
T 3bwn_A          103 LCQAAVHALSSLARSQPVSVVAAAPFYSTYV----EETTYVRSGMYKWEGD-AWGFD---KKGPYIELVTSPNNPDGTIR  174 (391)
T ss_dssp             HHHHHHHHHHHTSSSSSEEEEECSSCCTHHH----HHHHTTCBTTEEEEEE-STTCC---CCSCEEEEEESSCTTTCCCC
T ss_pred             HHHHHHHHhcCCCCCCcceEEEcCCCchhHH----HHHHHcCCeEEEecCC-HHHcC---CCCCEEEEECCCCCCCchhH
Confidence            45 34456788999    9999999999887    5567788888877753 23332   36789999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCC
Q 021783           78 DIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL  156 (307)
Q Consensus        78 ~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~  156 (307)
                      +  +|++.++++++++|+|++|..+... .....+.+++++||||.+ |++|+|+||++++++.+.+.+...........
T Consensus       175 ~--~l~~~~~~~~~~ii~De~y~~~~~~~l~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~  251 (391)
T 3bwn_A          175 E--TVVNRPDDDEAKVIHDFAYYWPHYTPITRRQDHDIMLFTFSKIT-GHAGSRIGWALVKDKEVAKKMVEYIIVNSIGV  251 (391)
T ss_dssp             C--CCC-----CCCEEEEECTTCSTTTSCCCCCBCCSEEEEEHHHHH-SCGGGCEEEEEECCHHHHHHHHHHHHHHHSSC
T ss_pred             H--HHHHHhhcCCCEEEEeCCCCCCCCCccccCCCCeEEEEechhhc-CCCccceEEEEecCHHHHHHHHHHhcccccCC
Confidence            7  5544223334999999999854322 112357899999999999 77899999999844556665655554333344


Q ss_pred             ChhhHHHHhhccc--------------cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCce
Q 021783          157 APFDCWICLRGVK--------------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV  222 (307)
Q Consensus       157 ~~~~~~~~~~~l~--------------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  222 (307)
                      +...+..+...++              .+....+.+.++.+.+.+.|++.+.+   ........ ............+.+
T Consensus       252 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~---~~~~p~~~-~~~f~~~~~~~~g~~  327 (391)
T 3bwn_A          252 SKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAF---TLPKYPEA-FCNYFGKSLESYPAF  327 (391)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSE---ECCCCCCE-EETTTTEEECCCCSE
T ss_pred             CHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---ccccCCcc-ccccccccCCCcceE
Confidence            4444444444432              23334455566667777777765422   11110000 000000000113456


Q ss_pred             EEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHH
Q 021783          223 LSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDK  300 (307)
Q Consensus       223 ~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~  300 (307)
                      +++.+++.+   .+.+.+.++||.+++|..|.                      ..++++|||++.  +++++.++.|.+
T Consensus       328 ~~~~~~~~~---~~~~~l~~~gV~v~pg~~fg----------------------~~~~~iRis~~~~~e~i~~~~~~L~~  382 (391)
T 3bwn_A          328 AWLGTKEET---DLVSELRRHKVMSRAGERCG----------------------SDKKHVRVSMLSREDVFNVFLERLAN  382 (391)
T ss_dssp             EEEEESSSC---CHHHHHHHTTEECEEGGGGT----------------------CCTTEEEEESCSCHHHHHHHHHHHHS
T ss_pred             EEecCCcHH---HHHHHHHHCCEEEccCCCCC----------------------CCCCEEEEEecCCHHHHHHHHHHHHH
Confidence            788886432   34444566799998887642                      135789999985  345666666666


Q ss_pred             HHh
Q 021783          301 ALR  303 (307)
Q Consensus       301 ~l~  303 (307)
                      +++
T Consensus       383 ~~~  385 (391)
T 3bwn_A          383 MKL  385 (391)
T ss_dssp             CC-
T ss_pred             HHH
Confidence            553

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.92  E-value=5.4e-24  Score=187.81  Aligned_cols=246  Identities=15%  Similarity=0.149  Sum_probs=165.0

Q ss_pred             CCCCe-EEEcCCCCcchHHHHhhhcccC--CcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHH
Q 021783           12 GTGEE-IVAGDDLYGGTDRLLSRVTPKT--GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA   88 (307)
Q Consensus        12 ~~gd~-Vlv~~~~~~~~~~~~~~~~~~~--g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~   88 (307)
                      ++||+ |+++.+.|+++...+...++..  |++++.++.  ++++++.+++++++|++++++||||.+.|+++|.++|++
T Consensus       116 ~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~  193 (416)
T 1qz9_A          116 SPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS--PEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHE  193 (416)
T ss_dssp             STTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS--GGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHH
T ss_pred             CCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc--HHHHHHHhCCCceEEEEeccccCcccccCHHHHHHHHHH
Confidence            89997 5566678887765554444444  899999997  899999999899999999999999999999999999999


Q ss_pred             cCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCcee-EEEEEcChhHHHHHHHH-H----------------
Q 021783           89 HGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMA-GVLAVKGERLAKELYFL-Q----------------  149 (307)
Q Consensus        89 ~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~-G~~~~~~~~~~~~~~~~-~----------------  149 (307)
                      ||+++|+|++|+.|..+ +...++.|++++|+||+++++.+  + |+++++++.... +... .                
T Consensus       194 ~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~g~~--~~g~l~~~~~~~~~-l~~~~~g~~g~~~~~~~~~~~~  270 (416)
T 1qz9_A          194 CGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPG--SQAFVWVSPQLCDL-VPQPLSGWFGHSRQFAMEPRYE  270 (416)
T ss_dssp             HTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTT--CCCEEEECTTTTTT-SCCSCCCGGGBCTTSCCCSSCC
T ss_pred             cCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCCCCC--CeEEEEECHHHHhc-cCCCccccCccccccCCCCccC
Confidence            99999999999977654 44445789999999999855455  6 999998764322 1110 0                


Q ss_pred             ------HhcCCCCChhhHHHHhhcc-----ccHHHHHHHHHHHHHHHHHHHhcC-C--CccEEecCCCCCCCchHHHhhh
Q 021783          150 ------NAEGSGLAPFDCWICLRGV-----KTMALRVEKQQDNAQKIAEFLASH-P--RVKKVNYAGLPEHPGHELHYSQ  215 (307)
Q Consensus       150 ------~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~l~~~l~~~-~--~~~~~~~~~l~~~~~~~~~~~~  215 (307)
                            .....+.+.........++     +.+....++..++.+.+.+.|++. +  ++ .+..+.            .
T Consensus       271 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~-~~~~~~------------~  337 (416)
T 1qz9_A          271 PSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHEL-TLVTPR------------E  337 (416)
T ss_dssp             BCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCC-EECSCS------------S
T ss_pred             CCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCe-EEeCCC------------C
Confidence                  0111122222222222222     233445566666777777777653 2  22 111110            0


Q ss_pred             ccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec-c----CC
Q 021783          216 AKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-I----ED  290 (307)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~-~----~~  290 (307)
                      ....++++++.+++   ...+.+.|..+||.+...                           .++++||+++ .    ++
T Consensus       338 ~~~~~~~~~~~~~~---~~~l~~~l~~~gi~~~~~---------------------------~~~~lRis~~~~~~t~~~  387 (416)
T 1qz9_A          338 HAKRGSHVSFEHPE---GYAVIQALIDRGVIGDYR---------------------------EPRIMRFGFTPLYTTFTE  387 (416)
T ss_dssp             GGGBCSEEEEECTT---HHHHHHHHHTTTEECEEE---------------------------TTTEEEEECCTTTCCHHH
T ss_pred             HHHcCCEEEEecCC---HHHHHHHHHhCCcEeccC---------------------------CCCeEEEeCcccCCCHHH
Confidence            00135678888764   456777777778865320                           2456999996 2    67


Q ss_pred             hHHHHHHHHHHHhcC
Q 021783          291 VNDLISDLDKALRTG  305 (307)
Q Consensus       291 ~~~~i~~l~~~l~~~  305 (307)
                      ++++++.|.+++++.
T Consensus       388 i~~~~~~l~~~~~~~  402 (416)
T 1qz9_A          388 VWDAVQILGEILDRK  402 (416)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcc
Confidence            777788887777643

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.92  E-value=1.5e-23  Score=183.64  Aligned_cols=275  Identities=15%  Similarity=0.159  Sum_probs=179.6

Q ss_pred             HH-HHHHHh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.++ +++||+|++++++|+++.    ..++..|++++.++.+      |++++++.+++++++|+++   ||+|
T Consensus        66 al~~~~~~~~~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~---~~~G  138 (393)
T 1mdo_A           66 GMHIALMALGIGEGDEVITPSMTWVSTL----NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPV---HYAG  138 (393)
T ss_dssp             HHHHHHHHTTCCTTCEEEEESSSCHHHH----HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCB---CGGG
T ss_pred             HHHHHHHHcCCCCCCEEEeCCCccHhHH----HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCCCceEEEEe---CCCC
Confidence            44 455566 799999999999999887    4566789999999853      7899999998889998875   4899


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCccCCCCcCCccCCC-ccEEEeccc--cccccCCCceeEEEEEcChhHHHHHHHHHHh
Q 021783           75 QICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELG-ADIVMHSAT--KFIAGHSDVMAGVLAVKGERLAKELYFLQNA  151 (307)
Q Consensus        75 ~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~--K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~  151 (307)
                      .+.++++|.++|+++|+++|+|++|+.|.......++ .|++++|+|  |++++  | ++|+++.+++.+.+.+......
T Consensus       139 ~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~S~~k~K~l~~--~-~~g~~~~~~~~~~~~l~~~~~~  215 (393)
T 1mdo_A          139 APADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITC--A-EGGIVVTDNPQFADKLRSLKFH  215 (393)
T ss_dssp             CCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCS--S-SCEEEEESCHHHHHHHHHHTBT
T ss_pred             CcCCHHHHHHHHHHcCCeEEEECccccCCeECCeecCCCCeEEEeCCCCCcccc--c-cceEEEeCCHHHHHHHHHHHhc
Confidence            9999999999999999999999999987543333345 899999999  88853  2 5899999765555544433221


Q ss_pred             cC------------------------CCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCC
Q 021783          152 EG------------------------SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP  207 (307)
Q Consensus       152 ~~------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~  207 (307)
                      ..                        .......+.+....++.++...++..++.+.+.+.|++.+ + .+.  ..... 
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~-~-~~~--~~~~~-  290 (393)
T 1mdo_A          216 GLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLP-F-QPL--SLPSW-  290 (393)
T ss_dssp             TEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSS-C-EEC--CCCSS-
T ss_pred             CCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-c-ccc--cCCCC-
Confidence            10                        1134444444445555566666666777777887777653 2 111  10000 


Q ss_pred             chHHHhhhccCCCceEEEEeCC---HHHHHHHHhcCCcceeecCCCCccceeecccccC---CCCCcHHHHHhcCCCCCe
Q 021783          208 GHELHYSQAKGAGSVLSFLTGS---LALSKHVVETTKYFSITVSFGSVKSLISMPCFMS---HASIPVEVRQARGLTEDL  281 (307)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~  281 (307)
                             ..+..+.++++.+++   .....++.+.|..+||.++.|..+.. ..|....   ...++....    ..++.
T Consensus       291 -------~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~  358 (393)
T 1mdo_A          291 -------EHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAH-TQKYYRERFPTLTLPDTEW----NSERI  358 (393)
T ss_dssp             -------CEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGG-GSHHHHHHSTTCCCHHHHH----HHTTE
T ss_pred             -------CCCceeEEEEEEecccccccCHHHHHHHHHhCCCCcccccCccc-cChhhhccCCccCChhHHH----HHhCE
Confidence                   001234577888763   12367888888889999988764210 0010000   001111000    01457


Q ss_pred             EEEEecc----CChHHHHHHHHHHHhc
Q 021783          282 VRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       282 iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                      +|++++.    ++++++++.|+++++.
T Consensus       359 lRi~~~~~~t~~~i~~~~~~l~~~~~~  385 (393)
T 1mdo_A          359 CSLPLFPDMTESDFDRVITALHQIAGQ  385 (393)
T ss_dssp             EEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred             EEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence            9999984    5666666666666653

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.91  E-value=1.1e-23  Score=186.39  Aligned_cols=251  Identities=16%  Similarity=0.111  Sum_probs=167.2

Q ss_pred             CCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcCC-CceEEE-EeCCCCCccccccHH---HHHH
Q 021783           14 GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGP-WTKLVW-VESPTNPRQQICDIR---KIAE   84 (307)
Q Consensus        14 gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~~-~~~~v~-~~~~~n~tG~~~~~~---~l~~   84 (307)
                      +|+|++++|+|+++.    ..++..|++++.+|.+    |++++++.+++ ++++|+ +++|+||||.+++.+   +|.+
T Consensus       131 ~~~Vl~~~p~y~~~~----~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~  206 (422)
T 3d6k_A          131 KVKWLCPVPGYDRHF----TITEHFGFEMINVPMTDEGPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAE  206 (422)
T ss_dssp             CCEEEEEESCCHHHH----HHHHHHTCEEEEEEEETTEECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHH
T ss_pred             CCEEEEeCCccHHHH----HHHHHcCCEEEecCCCCCCCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHH
Confidence            347999999998888    5567789999999873    89999999985 789988 679999999999865   7778


Q ss_pred             HHH-HcCCEEEEeCccCC-CCc------CCc-------cCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           85 MAH-AHGALLLVDNSIMS-PVL------SRP-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        85 ~~~-~~~~~li~D~a~~~-~~~------~~~-------~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                      +|+ +||+++|+|++|+. +..      ...       ...+.+++++||||+. + +|+|+||++++++ +.+.+....
T Consensus       207 ~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~-~GlriG~~~~~~~-l~~~l~~~~  283 (422)
T 3d6k_A          207 MSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKIT-H-AGSGVSFFASSKE-NIEWYASHA  283 (422)
T ss_dssp             CCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTS-C-TTSSCEEEECCHH-HHHHHHHHH
T ss_pred             HHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhc-C-cccceEEEEeCHH-HHHHHHHHH
Confidence            887 99999999999973 111      111       2346899999999983 4 4899999999844 555555555


Q ss_pred             HhcCCCCChhhHHHHhhcccc-------HHHHHHHHHHHHHHHHHHHhcC-CCccEEecCCCCCCCchHHHhhhccCCCc
Q 021783          150 NAEGSGLAPFDCWICLRGVKT-------MALRVEKQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHELHYSQAKGAGS  221 (307)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (307)
                      .......+...+..+...++.       ++...+.+.++.+.+.+.+++. +....+...             . ...+.
T Consensus       284 ~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~-------------~-p~~g~  349 (422)
T 3d6k_A          284 NVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWT-------------S-PTGGY  349 (422)
T ss_dssp             HHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEC-------------C-CSBSS
T ss_pred             HhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEe-------------C-CCcce
Confidence            444444555555555555543       1112233333444555555432 100000000             0 11366


Q ss_pred             eEEEEeCCHHHHHHHHhcCCcceeecCCC-CccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc---CChHHHHHH
Q 021783          222 VLSFLTGSLALSKHVVETTKYFSITVSFG-SVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISD  297 (307)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~g-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~~~~~i~~  297 (307)
                      ++++.++.. ....+.+.+.++||.+++| ..|..-                  ....++++|||++.   +++++.++.
T Consensus       350 ~~~~~~~~~-~~~~~~~~l~~~gV~v~~~g~~f~~~------------------~~~~~~~iRis~~~~~~e~i~~~~~~  410 (422)
T 3d6k_A          350 FISVDVVPG-TASRVVELAKEAGIALTGAGSSFPLH------------------NDPNNENIRLAPSLPPVAELEVAMDG  410 (422)
T ss_dssp             CEEEEESTT-CHHHHHHHHHHTTEECCCTTTTSGGG------------------CCTTSCEEEECCSSSCHHHHHHHHHH
T ss_pred             EEEEECCCC-CHHHHHHHHHHCCeEEEcCccccCCC------------------CCCCCCeEEEecCCCCHHHHHHHHHH
Confidence            788888643 2566777788899999984 433200                  00125789999983   678888888


Q ss_pred             HHHHHhc
Q 021783          298 LDKALRT  304 (307)
Q Consensus       298 l~~~l~~  304 (307)
                      |.+++++
T Consensus       411 l~~~l~~  417 (422)
T 3d6k_A          411 FATCVLM  417 (422)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877754

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.91  E-value=2e-23  Score=181.61  Aligned_cols=275  Identities=13%  Similarity=0.118  Sum_probs=175.2

Q ss_pred             HH-HHHHHh---cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCc
Q 021783            3 AL-AAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPR   73 (307)
Q Consensus         3 al-~~~~~~---~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~t   73 (307)
                      |+ .++.++   +++||+|++++++|+++..    .++..|++++.++.+     |++++++.+++++++|+++++   |
T Consensus        59 al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~---t  131 (375)
T 2fnu_A           59 ALLTLYRNFSEFSADRNEIITTPISFVATAN----MLLESGYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDY---A  131 (375)
T ss_dssp             HHHHHHHHSSCCCTTSCEEEECSSSCTHHHH----HHHHTTCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECG---G
T ss_pred             HHHHHHHHhcccCCCCCEEEECCCccHhHHH----HHHHCCCEEEEeccCCCCCCCHHHHHhhcCcCceEEEEeCC---c
Confidence            44 455566   7899999999999999884    455689999999874     789999999888999888766   8


Q ss_pred             cccccHHHHHHHHHHcCCEEEEeCccCCCCcCC---ccCCCccEEEeccc--cccccCCCceeEEEEE-cChhHHHHHHH
Q 021783           74 QQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR---PLELGADIVMHSAT--KFIAGHSDVMAGVLAV-KGERLAKELYF  147 (307)
Q Consensus        74 G~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~---~~~~~~d~~~~s~~--K~~~g~~g~~~G~~~~-~~~~~~~~~~~  147 (307)
                      |.+.|+++|.++|++||+++|+|++|+.+....   ...++ |+++.|+|  |++ ++ |  .|++++ +++.+.+.+..
T Consensus       132 G~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~-~i~~~s~s~~K~~-~~-g--~g~~~~~~~~~~~~~~~~  206 (375)
T 2fnu_A          132 GKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFA-LASVFSFHAIKPI-TT-A--EGGAVVTNDSELHEKMKL  206 (375)
T ss_dssp             GCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSS-SEEEEECCTTSSS-CC-S--SCEEEEESCHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHcCCEEEEECccccCCeECCeeccccC-CeEEEeCCCCCCc-cc-c--CceEEEeCCHHHHHHHHH
Confidence            999999999999999999999999999776542   22223 67777777  999 55 6  566666 44555554443


Q ss_pred             HHHhc--------------C--CCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHH
Q 021783          148 LQNAE--------------G--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL  211 (307)
Q Consensus       148 ~~~~~--------------~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~  211 (307)
                      .....              +  .......+.+....++.+....++..++.+.+.+.|++.+++ .  .....       
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~--~~~~~-------  276 (375)
T 2fnu_A          207 FRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYF-T--PLHPL-------  276 (375)
T ss_dssp             HTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSE-E--ESGGG-------
T ss_pred             HHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-c--ccCCC-------
Confidence            32111              1  133444455555556666777777788888888888765432 1  11100       


Q ss_pred             HhhhccCCCceEEEEeCCH-H-HHHHHHhcCCcceeecCCCCccceeeccccc---CCCCCcHHHHHhcCCCCCeEEEEe
Q 021783          212 HYSQAKGAGSVLSFLTGSL-A-LSKHVVETTKYFSITVSFGSVKSLISMPCFM---SHASIPVEVRQARGLTEDLVRISV  286 (307)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~iRis~  286 (307)
                        ......+.++++.++.. . ....+.+.|..+||.++.+.. .....|...   ....++..    ....++++||++
T Consensus       277 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~-p~~~~~~~~~~~~~~~~~~~----~~~~~~~lRi~~  349 (375)
T 2fnu_A          277 --LKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYK-PIYQYQLYQQLFNTAPLKSA----EDFYHAEISLPC  349 (375)
T ss_dssp             --CSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCC-CGGGSHHHHHHHCCCCCHHH----HHHHHHEEEECC
T ss_pred             --CCCCcceEEEEEEeCccccchHHHHHHHHHHCCCCcccccc-ccccchhhhcCCCccCChHH----HHHHhCEEEecC
Confidence              00011234556666532 1 477888888888998874221 100000000   00001100    001136799999


Q ss_pred             cc----CChHHHHHHHHHHHhcCC
Q 021783          287 GI----EDVNDLISDLDKALRTGP  306 (307)
Q Consensus       287 ~~----~~~~~~i~~l~~~l~~~~  306 (307)
                      +.    ++++++++.|+++++++.
T Consensus       350 ~~~~t~~~i~~~~~~l~~~~~~~~  373 (375)
T 2fnu_A          350 HANLNLESVQNIAHSVLKTFESFK  373 (375)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhc
Confidence            85    566777777777665543

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.91  E-value=1.4e-24  Score=189.29  Aligned_cols=262  Identities=15%  Similarity=0.161  Sum_probs=169.7

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCC--cEEEEecC--------------CChHHHHhhcC-CCceEEE
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG--VVVKRVNT--------------CDLDEVASAIG-PWTKLVW   65 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g--~~~~~v~~--------------~d~~~l~~~l~-~~~~~v~   65 (307)
                      |+.+++..+++||+|++++++|++..  +...++..|  .+++.++.              .|++++++.+. +++++|+
T Consensus        63 a~~~~~~~~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~  140 (379)
T 3ke3_A           63 GMEAVARQLTIDEDCLIIRNGWFSYR--WTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVY  140 (379)
T ss_dssp             HHHHHHHHHCTTCEEEEEECSHHHHH--HHHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHhCCCCCeEEEEeCCchhHH--HHHHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEE
Confidence            45444456789999999999987653  223444444  46666652              58899999985 5799999


Q ss_pred             EeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhH
Q 021783           66 VESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        66 ~~~~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~  141 (307)
                      +++++|++|.+.|   +++|.++|++||+++|+|++++ |..+ +...+++|++++|+||++++++|  +|+++++++..
T Consensus       141 ~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~~~~~~~~~~~d~~~~s~~K~l~~~~g--~g~~~~~~~~~  217 (379)
T 3ke3_A          141 APHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GCVWLDMKELGIDVLISAPQKGWSSTPC--AGLVMLSAAAI  217 (379)
T ss_dssp             EESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TTCCCCHHHHTCSEEEECTTTTTCSCCC--EEEEEECHHHH
T ss_pred             EEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccccccccCCCEEEecchhhcCCCCc--eEEEEECHHHH
Confidence            9999999999999   9999999999999999999998 7655 55667899999999999988888  89999986643


Q ss_pred             HHHHHH----------------HHHh-cC-----CCCChhhHHHHhhccccH-----HHHHHHHHHHHHHHHHHHhcCCC
Q 021783          142 AKELYF----------------LQNA-EG-----SGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPR  194 (307)
Q Consensus       142 ~~~~~~----------------~~~~-~~-----~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~~~~~  194 (307)
                      .. +..                ...+ .+     .+.+....+....+++.+     +...++..+..+.+.+.+++.. 
T Consensus       218 ~~-l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g-  295 (379)
T 3ke3_A          218 KK-VESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKG-  295 (379)
T ss_dssp             HH-HHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             Hh-hhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcC-
Confidence            32 221                0000 11     133333333333444322     3334444555566666666541 


Q ss_pred             ccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHh
Q 021783          195 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA  274 (307)
Q Consensus       195 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~  274 (307)
                      +        .      +..+.....+.+..+..++.+ . .+.+.|.++||.++.|..++. ..|               
T Consensus       296 ~--------~------~~~~~~~~~~~i~~~~~~~~~-~-~~~~~L~~~Gi~v~~g~~~~~-~~~---------------  343 (379)
T 3ke3_A          296 I--------E------SVAAEGFEAPGVVVSYTERDD-M-HKGSAFAEAGLQIAAGVPLKV-GEP---------------  343 (379)
T ss_dssp             C--------C------BSBCTTCBCSSEEEEECSCHH-H-HSSHHHHHTTCCCEECCCCSS-CCC---------------
T ss_pred             C--------E------ecCCccccCceEEEEccCCcc-h-HHHHHHHHCCeEEeCCccccc-ccc---------------
Confidence            1        0      000000111234445555433 2 225556678998887764221 001               


Q ss_pred             cCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          275 RGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       275 ~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                        ...+++|+|++.    +|++++++.|+++++++
T Consensus       344 --~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~  376 (379)
T 3ke3_A          344 --DNFKTFRLGLFGLDKLTDIDGTVERFEKALDEV  376 (379)
T ss_dssp             --TTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHH
T ss_pred             --CcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHh
Confidence              125679999964    89999999999888653

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.91  E-value=4.1e-23  Score=182.52  Aligned_cols=241  Identities=15%  Similarity=0.075  Sum_probs=158.7

Q ss_pred             HHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC----C---ChHHHHhhcC---CCceEEEEeCCCCCccccc
Q 021783            8 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----C---DLDEVASAIG---PWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         8 ~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~----~---d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~   77 (307)
                      .+++++||+|++++|+|+++.    ..++..|++++.++.    +   |++++++.++   ++++++++++|+||||.++
T Consensus       137 ~~~~~~gd~Vlv~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~  212 (420)
T 4f4e_A          137 LRTLNPKAKVAISDPSWENHR----ALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDL  212 (420)
T ss_dssp             HHHHCTTCCEEEEESCCHHHH----HHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCC
T ss_pred             HHHhCCCCEEEEeCCCcHhHH----HHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC
Confidence            456799999999999998887    566778999999987    2   8999999997   6789999999999999997


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCccCCCCcC----------CccCCCccEEEeccccccccCCCceeEEEEE--cChhHH
Q 021783           78 D---IRKIAEMAHAHGALLLVDNSIMSPVLS----------RPLELGADIVMHSATKFIAGHSDVMAGVLAV--KGERLA  142 (307)
Q Consensus        78 ~---~~~l~~~~~~~~~~li~D~a~~~~~~~----------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~--~~~~~~  142 (307)
                      +   +++|+++|++||+++|+|++|+.....          .....+.+++++|+||.+ +++|+|+|++++  +++...
T Consensus       213 ~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~~~~~~~~~  291 (420)
T 4f4e_A          213 NDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSF-SLYGERVGALSIITDSKDEA  291 (420)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTT-TCGGGCEEEEEEECSSHHHH
T ss_pred             CHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccC-cCcCCCcEEEEEEcCCHHHH
Confidence            6   778999999999999999999744321          112346789999999999 778999999875  334333


Q ss_pred             HH-HHHH---HHhcCCCCChhhHHHHhhcccc----------HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCc
Q 021783          143 KE-LYFL---QNAEGSGLAPFDCWICLRGVKT----------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG  208 (307)
Q Consensus       143 ~~-~~~~---~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~  208 (307)
                      +. ....   ........+...+..+...+..          ++...+.+.++.+.+.+.|++...           .++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-----------~~~  360 (420)
T 4f4e_A          292 ARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGI-----------ERD  360 (420)
T ss_dssp             HHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------SSC
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------CCC
Confidence            22 2222   2222233344444443333322          233344455555666666654310           012


Q ss_pred             hHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc
Q 021783          209 HELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  288 (307)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~  288 (307)
                      +....+   ..+.++++.++    ...+...+.++||.+.++                               .|+|++.
T Consensus       361 ~~~~~~---~~g~~~~~~~~----~~~~~~~l~~~gI~v~~~-------------------------------~Ris~~~  402 (420)
T 4f4e_A          361 FSFINA---QRGMFSYSGLT----SAQVDRLREEFGIYAVST-------------------------------GRICVAA  402 (420)
T ss_dssp             CTHHHH---SCSSEEECCCC----HHHHHHHHHHHCEECCTT-------------------------------SEEEGGG
T ss_pred             ceeECC---CccEEEEeCCC----HHHHHHHHHhCCEEecCC-------------------------------CeEEEec
Confidence            222211   12333333333    234455556678876541                               3788863


Q ss_pred             ---CChHHHHHHHHHHH
Q 021783          289 ---EDVNDLISDLDKAL  302 (307)
Q Consensus       289 ---~~~~~~i~~l~~~l  302 (307)
                         +++++.++.|.+++
T Consensus       403 ~~~~~i~~~~~~l~~~l  419 (420)
T 4f4e_A          403 LNTRNLDVVANAIAAVL  419 (420)
T ss_dssp             CCTTTHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence               67888888888776

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.91  E-value=9.4e-23  Score=179.56  Aligned_cols=178  Identities=13%  Similarity=0.166  Sum_probs=127.1

Q ss_pred             HhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcC---CCceEEEEeCCCCCcccccc
Q 021783            9 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG---PWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         9 ~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~   78 (307)
                      +++++||+|++++|+|+++.    ..++..|++++.++..       |++++++.++   ++++++++++|+||||.+++
T Consensus       126 ~~~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~  201 (409)
T 4eu1_A          126 RFVANCNRIYGPDVGYPNHE----SIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPT  201 (409)
T ss_dssp             GTSSSCCEEEEESSCCTHHH----HHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCC
T ss_pred             HhcCCCCEEEEeCCCcHhHH----HHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCC
Confidence            46689999999999998887    6667789999999862       7899999985   45677777999999999997


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCccCCCCcCC-----------ccCCCccEEEeccccccccCCCceeEEE--EEcChh--
Q 021783           79 ---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----------PLELGADIVMHSATKFIAGHSDVMAGVL--AVKGER--  140 (307)
Q Consensus        79 ---~~~l~~~~~~~~~~li~D~a~~~~~~~~-----------~~~~~~d~~~~s~~K~~~g~~g~~~G~~--~~~~~~--  140 (307)
                         +++|+++|++||+++|+|++|+......           ....+..++++|+||.+ |.+|+|+|++  ++.++.  
T Consensus       202 ~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~riG~~~~v~~~~~~~  280 (409)
T 4eu1_A          202 HDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNF-GLYGHRCGALHISTASAEEA  280 (409)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTS-SCGGGCCEEEEEECSSHHHH
T ss_pred             HHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccc-cCccCCceEEEEEeCCHHHH
Confidence               5569999999999999999997543221           12234678999999999 6779999997  666665  


Q ss_pred             --HHHHHHHHHHhcCCCCChhhHHHHhhcccc----------HHHHHHHHHHHHHHHHHHHhc
Q 021783          141 --LAKELYFLQNAEGSGLAPFDCWICLRGVKT----------MALRVEKQQDNAQKIAEFLAS  191 (307)
Q Consensus       141 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~l~~~l~~  191 (307)
                        +.+.+...........+...+..+...++.          +....+.+.++.+.+.+.|++
T Consensus       281 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  343 (409)
T 4eu1_A          281 KRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKA  343 (409)
T ss_dssp             HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              434444433333344445555555444432          233344455555666666654

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.91  E-value=1.8e-22  Score=177.31  Aligned_cols=122  Identities=12%  Similarity=0.117  Sum_probs=100.2

Q ss_pred             hcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcC---CCceEEEEeCCCCCcccccc-
Q 021783           10 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG---PWTKLVWVESPTNPRQQICD-   78 (307)
Q Consensus        10 ~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~-   78 (307)
                      +++|||+|++++|+|.++.    ..++..|++++.++.+       |++++++.+.   ++++++++++|+||||.+++ 
T Consensus       119 ~~~~gd~Vlv~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~  194 (401)
T 7aat_A          119 FFKFSRDVYLPKPSWGNHT----PIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQ  194 (401)
T ss_dssp             HCTTCCEEEEEESCCTTHH----HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCH
T ss_pred             hccCCCEEEEcCCCchhHH----HHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCH
Confidence            4589999999999999888    5567789999999863       6676665554   67899999999999998875 


Q ss_pred             --HHHHHHHHHHcCCEEEEeCccCCCCcCC-----------ccCCCccEEEeccccccccCCCceeEEEEE
Q 021783           79 --IRKIAEMAHAHGALLLVDNSIMSPVLSR-----------PLELGADIVMHSATKFIAGHSDVMAGVLAV  136 (307)
Q Consensus        79 --~~~l~~~~~~~~~~li~D~a~~~~~~~~-----------~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~  136 (307)
                        +++|+++|++||+++|+|++|.......           ....+.+++++|+||.+ |.+|+|+|++++
T Consensus       195 ~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~~~G~RiG~l~~  264 (401)
T 7aat_A          195 EQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNM-GLYGERAGAFTV  264 (401)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS-CCGGGCEEEEEE
T ss_pred             HHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCccc-ccccCceEEEEE
Confidence              8899999999999999999997543321           12335789999999999 778999999987

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.91  E-value=3.1e-24  Score=184.11  Aligned_cols=210  Identities=9%  Similarity=0.109  Sum_probs=143.9

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccc
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~   77 (307)
                      |+.++...+  ||+|+++ |+|+++.    ..++..|++++.+|.+     |++++     +++++|++++|+||||.++
T Consensus        88 al~~~~~~~--gd~Vl~~-p~y~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l-----~~~~~v~l~~p~nptG~~~  155 (335)
T 1uu1_A           88 IIYVMMLMF--DRSVFFP-PTYSCYR----IFAKAVGAKFLEVPLTKDLRIPEVNV-----GEGDVVFIPNPNNPTGHVF  155 (335)
T ss_dssp             HHHHHHHHS--SEEEECS-SSCHHHH----HHHHHHTCEEEECCCCTTSCCCCCCC-----CTTEEEEEESSCTTTCCCC
T ss_pred             HHHHHHHHh--CCcEEEC-CCcHHHH----HHHHHcCCeEEEeccCCCCCCCHHHc-----CCCCEEEEeCCCCCCCCCC
Confidence            443333434  9999999 9998877    5566789999999864     34444     5789999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCccCCC----CcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcC
Q 021783           78 DIRKIAEMAHAHGALLLVDNSIMSP----VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  153 (307)
Q Consensus        78 ~~~~l~~~~~~~~~~li~D~a~~~~----~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~  153 (307)
                      +.+++.++++.+| ++|+|++|+..    ........+.+++++|+||++ |++|+|+|++++++ .+.+.+.....  .
T Consensus       156 ~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~-~~~~~l~~~~~--~  230 (335)
T 1uu1_A          156 EREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAF-SLAAQRVGYVVASE-KFIDAYNRVRL--P  230 (335)
T ss_dssp             CHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTT-TCGGGCCEEEEECH-HHHHHHHHHSC--T
T ss_pred             CHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhc-CCcccCeEEEEeCH-HHHHHHHHhcC--C
Confidence            9999999999989 99999999732    122223456889999999999 66789999999964 45444443322  1


Q ss_pred             CCCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH
Q 021783          154 SGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  230 (307)
Q Consensus       154 ~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (307)
                      ...+...+..+...++.   +....+...++.+.+.+.+++. ++ .+       .          +..++++++.+++ 
T Consensus       231 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~-------~----------~~~~~~~~~~~~~-  290 (335)
T 1uu1_A          231 FNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM-GY-RI-------T----------DSRGNFVFVFMEK-  290 (335)
T ss_dssp             TCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-TC-CB-------C----------CCCSSEEEEECCT-
T ss_pred             CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-Cc-EE-------c----------CCCCeEEEEECCC-
Confidence            24445555555555543   3334455556666666666543 11 00       0          1135677888876 


Q ss_pred             HHHHHHHhcCCcceeecCC
Q 021783          231 ALSKHVVETTKYFSITVSF  249 (307)
Q Consensus       231 ~~~~~~~~~l~~~gi~v~~  249 (307)
                      .+..++.+.|.++||.++.
T Consensus       291 ~~~~~~~~~l~~~gi~v~~  309 (335)
T 1uu1_A          291 EEKERLLEHLRTKNVAVRS  309 (335)
T ss_dssp             HHHHHHHHHHHHHTEEEEE
T ss_pred             CCHHHHHHHHHHCCEEEEE
Confidence            3467788888788887764

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.5e-24  Score=194.27  Aligned_cols=240  Identities=17%  Similarity=0.195  Sum_probs=171.6

Q ss_pred             CeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHH
Q 021783           15 EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA   88 (307)
Q Consensus        15 d~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~   88 (307)
                      |+|+++.+.|+++.    ..++..|++++.++.+      |++++++++++++++|++++|+||+|.+.|+++|.++|++
T Consensus       159 ~~Vi~~~~~h~~~~----~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~~la~~  234 (497)
T 3mc6_A          159 PEIIAPVTAHAGFD----KAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQK  234 (497)
T ss_dssp             CEEEEETTSCHHHH----HHHHHSCCEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTTTHHHH
T ss_pred             ceEEEeCCccHHHH----HHHHHcCCeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHHHHHHH
Confidence            89999999999887    6677789999999864      5899999999999999999999999999999999999999


Q ss_pred             cCCEEEEeCccCCC-----------Cc--CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH-HHhcCC
Q 021783           89 HGALLLVDNSIMSP-----------VL--SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-QNAEGS  154 (307)
Q Consensus        89 ~~~~li~D~a~~~~-----------~~--~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~-~~~~~~  154 (307)
                      ||+++|+|++|+.+           ..  .+....|+|++++|+||+++++.+  +|+++++++.+....... ..+.+.
T Consensus       235 ~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~  312 (497)
T 3mc6_A          235 YKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKG--SSVIMYRNSDLRMHQYYVNPAWTGG  312 (497)
T ss_dssp             TTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSS--CEEEECSSHHHHTTTSCCBTTCTTS
T ss_pred             hCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCC--ceeEEecCHHHHhhhhcccccccCC
Confidence            99999999999732           12  134456899999999999867666  899999877554321100 000010


Q ss_pred             ---C------CC---hhhHHHHhhcc--ccHHHHHHHHHHHHHHHHHHHhcC-CCccEEecCCCCCCCchHHHhhhccCC
Q 021783          155 ---G------LA---PFDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHELHYSQAKGA  219 (307)
Q Consensus       155 ---~------~~---~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (307)
                         .      ..   ...++.++..+  ..+....++..++++.+.+.|++. +++. +..+                ..
T Consensus       313 ~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~-~~~~----------------~~  375 (497)
T 3mc6_A          313 LYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLD-IMGN----------------PR  375 (497)
T ss_dssp             CBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCE-ECSC----------------CC
T ss_pred             CcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE-EecC----------------CC
Confidence               0      00   12244433333  234555677778888888888873 4331 1111                13


Q ss_pred             CceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec---cCChHHHHH
Q 021783          220 GSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG---IEDVNDLIS  296 (307)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~---~~~~~~~i~  296 (307)
                      +++++|...+.+ ..++.+.|..+||.++.+..                          ++.+|++++   .++++++++
T Consensus       376 ~~~v~~~~~~~~-~~~l~~~L~~~Gi~v~~~~~--------------------------~~~~ri~~~~~t~e~i~~~~~  428 (497)
T 3mc6_A          376 YSVISFSSKTLN-IHELSDRLSKKGWHFNALQK--------------------------PVALHMAFTRLSAHVVDEICD  428 (497)
T ss_dssp             SSEEEEECTTTT-HHHHHHHHHTTTCBCEECCS--------------------------SCCEEEECCTTTTCTHHHHHH
T ss_pred             eeEEEEeCCCCC-HHHHHHHHHhCCEEEecCCC--------------------------CCeEEEEEeCCCHHHHHHHHH
Confidence            667888776543 77888888888887654332                          223788886   389999999


Q ss_pred             HHHHHHhc
Q 021783          297 DLDKALRT  304 (307)
Q Consensus       297 ~l~~~l~~  304 (307)
                      .|.+++++
T Consensus       429 ~L~~~l~~  436 (497)
T 3mc6_A          429 ILRTTVQE  436 (497)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.91  E-value=5.2e-23  Score=183.23  Aligned_cols=256  Identities=13%  Similarity=0.065  Sum_probs=163.4

Q ss_pred             HHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC---C-----ChHHHHhhcC---CCceEEEEeCCCCCccc
Q 021783            7 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---C-----DLDEVASAIG---PWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         7 ~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~---~-----d~~~l~~~l~---~~~~~v~~~~~~n~tG~   75 (307)
                      +.+++.+||+|++++|+|+++...+...++..|++++.++.   +     |++++++.++   ++++++++++|+||||.
T Consensus       138 ~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~  217 (448)
T 3meb_A          138 FLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGI  217 (448)
T ss_dssp             HHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCC
T ss_pred             HHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCc
Confidence            45577899999999999998884333222278999988886   2     7899999886   46788889999999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCccCCCCcCC-------c----cCCCccEEEeccccccccCCCceeEEE--EE---
Q 021783           76 ICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-------P----LELGADIVMHSATKFIAGHSDVMAGVL--AV---  136 (307)
Q Consensus        76 ~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~-------~----~~~~~d~~~~s~~K~~~g~~g~~~G~~--~~---  136 (307)
                      +++   +++|+++|++||+++|+|++|.......       .    .....++++.|+||.+ |++|.|.|++  ++   
T Consensus       218 ~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~l~~v~~~~  296 (448)
T 3meb_A          218 DFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNF-GLYGERIGCLHVVHAGV  296 (448)
T ss_dssp             CCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTS-CCGGGCCEEEEEECCCC
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccC-CCccccceeeeeeeccc
Confidence            987   5669999999999999999987433221       0    1224568899999999 6789999998  66   


Q ss_pred             -----cCh----hHHHHHHHHHHhcCCCCChhhHHHHhhcccc----------HHHHHHHHHHHHHHHHHHHhcCCCccE
Q 021783          137 -----KGE----RLAKELYFLQNAEGSGLAPFDCWICLRGVKT----------MALRVEKQQDNAQKIAEFLASHPRVKK  197 (307)
Q Consensus       137 -----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~l~~~l~~~~~~~~  197 (307)
                           +++    .+.+.+....+......+...+..+...+..          +....+++.++.+.+.+.|++..    
T Consensus       297 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~----  372 (448)
T 3meb_A          297 EGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRK----  372 (448)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred             cccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----
Confidence                 444    3333344444444444555555555555433          22333444555555666665431    


Q ss_pred             EecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCC
Q 021783          198 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  277 (307)
Q Consensus       198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~  277 (307)
                        .++......+....  +  .++++.|.--+.+....   .+.++||.+.+|.                          
T Consensus       373 --~~~~~~~~~~~~~~--~--~~g~~~~~~~~~~~~~~---ll~~~gV~v~~G~--------------------------  417 (448)
T 3meb_A          373 --TPGPGSKGTWDHIL--T--AIGMFTFTGLTPEHVDY---LKEKWSIYLVKAG--------------------------  417 (448)
T ss_dssp             --CCCSTTTCCCTHHH--H--CCSSEEECCCCHHHHHH---HHHHHCEEECSGG--------------------------
T ss_pred             --CCCcCcccccceeC--C--CceEEEecCCCHHHHHH---HHHhCCEEEeCCC--------------------------
Confidence              01100000121111  1  23444442222222222   2345688776543                          


Q ss_pred             CCCeEEEEecc---CChHHHHHHHHHHHhcCC
Q 021783          278 TEDLVRISVGI---EDVNDLISDLDKALRTGP  306 (307)
Q Consensus       278 ~~~~iRis~~~---~~~~~~i~~l~~~l~~~~  306 (307)
                          .|||++.   +++++.++.|.+++++++
T Consensus       418 ----gRis~a~~~~~~i~~~~~~l~~~l~~~~  445 (448)
T 3meb_A          418 ----GRMSMCGLTESNCDYVAEAIHDAVTKLP  445 (448)
T ss_dssp             ----GEEEGGGCCTTTHHHHHHHHHHHHHHSC
T ss_pred             ----cEEEEecCCHHHHHHHHHHHHHHHHhcc
Confidence                4888853   789999999999988664

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.91  E-value=1.2e-22  Score=179.04  Aligned_cols=227  Identities=16%  Similarity=0.161  Sum_probs=167.3

Q ss_pred             HH-HHHHHhcCCCCeEEEcC-CCCcchHHHHh------hhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeC-
Q 021783            3 AL-AAVTHLLGTGEEIVAGD-DLYGGTDRLLS------RVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVES-   68 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~-~~~~~~~~~~~------~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~-   68 (307)
                      |+ .++.++++|||+|++++ +.|.++...+.      ..++..|++++.++.+     |++++++++++++++|++++ 
T Consensus        95 Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~s  174 (431)
T 3ht4_A           95 AISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRS  174 (431)
T ss_dssp             HHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCTTEEEEEEECS
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCCCCeEEEEECC
Confidence            45 55666899999999998 99988774432      3456689999999984     99999999999999999995 


Q ss_pred             CCCCcccc---ccHHHHHHHHHH--cCCEEEEeCccCCCCc-CCccCCCccEEEeccccccccCCCceeEEEEEcChhHH
Q 021783           69 PTNPRQQI---CDIRKIAEMAHA--HGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  142 (307)
Q Consensus        69 ~~n~tG~~---~~~~~l~~~~~~--~~~~li~D~a~~~~~~-~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~  142 (307)
                      ++||+|..   .++++|.++|++  +|+++|+|++|+.+.. ..+..+|+|++++|++|+++|..+..+|+++++++ +.
T Consensus       175 p~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~-li  253 (431)
T 3ht4_A          175 KGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTGGYIVGKEQ-YV  253 (431)
T ss_dssp             CTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGGGTTCSEEEEETTSGGGTTTCSSCEEEEECHH-HH
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCccccCCeEEEcCccccCCCCCCCceEEEEecHH-HH
Confidence            66665554   579999999999  9999999999998875 36667789999999999987633344699999854 44


Q ss_pred             HHHHHHHHh--cCCC--CChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          143 KELYFLQNA--EGSG--LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       143 ~~~~~~~~~--~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      +.+......  .+..  .+...+++...+++.+..+.++..+++..+.+.|++...  .+ ++. .+.          ++
T Consensus       254 ~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~L~~~g~--~v-~p~-~~~----------~~  319 (431)
T 3ht4_A          254 EACAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPHVAGQALKGAIFTAAFLEKLGM--NT-SPA-WNA----------PR  319 (431)
T ss_dssp             HHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--CE-ESC-TTS----------CC
T ss_pred             HHHHHHhccCCcccccCccHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHhCcC--Ee-cCC-CCC----------CC
Confidence            444433222  2211  212235566677777788889999999999999987642  22 332 111          22


Q ss_pred             CCceEEEEeCCHHHHHHHHhcCCcce
Q 021783          219 AGSVLSFLTGSLALSKHVVETTKYFS  244 (307)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~l~~~g  244 (307)
                      .+.++.+.+++.+....+.+.++...
T Consensus       320 ~~li~~i~l~~~~~~~~~~~~l~~~~  345 (431)
T 3ht4_A          320 TDLIQSVQFDDKDRMIAFCQAIQYAS  345 (431)
T ss_dssp             SSSCCEEECCCHHHHHHHHHHHHHTS
T ss_pred             ccEEEEEEeCCHHHHHHHHHHHHhcC
Confidence            34578888888777888888887653

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.91  E-value=2.4e-23  Score=189.01  Aligned_cols=127  Identities=17%  Similarity=0.259  Sum_probs=103.2

Q ss_pred             hcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-------CChHHHHhhcCCCceEEEEeCCCCCcccccc---H
Q 021783           10 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---I   79 (307)
Q Consensus        10 ~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~---~   79 (307)
                      +++|||+|++++|+|+.+....  .....|++++.++.       .|++++++.+.+++++|++++|+||||.+++   +
T Consensus       190 l~~~Gd~Vlv~~P~y~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~~~~l  267 (546)
T 2zy4_A          190 LLKAGDKVAIGMPVFTPYIEIP--ELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSL  267 (546)
T ss_dssp             SSCTTCEEEEEESCCHHHHHHH--HSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEEEESSCSSSCBCCCHHHH
T ss_pred             cCCCCCEEEEeCCCCccHHHHH--HHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEEEECCCCCCCccCCHHHH
Confidence            4789999999999998887331  14456889998886       3788999888888999999999999999986   6


Q ss_pred             HHHHHHH--HHcCCEEEEeCccCCCCc--CCcc--CCCccEEEeccccccccCCCceeEEEEEcCh
Q 021783           80 RKIAEMA--HAHGALLLVDNSIMSPVL--SRPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        80 ~~l~~~~--~~~~~~li~D~a~~~~~~--~~~~--~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      ++|+++|  +++|+++|+|++|+....  ....  ..+.++++.|+||++ |.+|+|+||++++++
T Consensus       268 ~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~  332 (546)
T 2zy4_A          268 ERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYF-GATGWRLGVVAAHQQ  332 (546)
T ss_dssp             HHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTT-TCGGGCEEEEEEESS
T ss_pred             HHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCcccc-CCCCcceEEEEECCH
Confidence            7788888  788999999999984332  1111  125789999999999 678999999999875

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.90  E-value=1.3e-22  Score=177.84  Aligned_cols=240  Identities=11%  Similarity=0.052  Sum_probs=157.2

Q ss_pred             HHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC----C---ChHHHHhhcC---CCceEEEEeCCCCCccccc
Q 021783            8 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----C---DLDEVASAIG---PWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         8 ~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~----~---d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~   77 (307)
                      .+++++||+|+++.|+|+++.    ..++..|++++.++.    +   |++++++.++   ++++++++++|+||||.++
T Consensus       115 ~~~~~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~  190 (397)
T 3fsl_A          115 LKRYFPESGVWVSDPTWENHV----AIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADL  190 (397)
T ss_dssp             HHHHCTTCCEEEESSCCHHHH----HHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCC
T ss_pred             HHhcCCCCeEEEeCCCchhHH----HHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCC
Confidence            456799999999999998887    556778999999987    3   8999999997   6788999999999999997


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCccCCCCcC----------CccCCCccEEEeccccccccCCCceeEEEEE--cChhHH
Q 021783           78 D---IRKIAEMAHAHGALLLVDNSIMSPVLS----------RPLELGADIVMHSATKFIAGHSDVMAGVLAV--KGERLA  142 (307)
Q Consensus        78 ~---~~~l~~~~~~~~~~li~D~a~~~~~~~----------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~--~~~~~~  142 (307)
                      +   +++|+++|++||+++|+|++|+.....          .....+.+++++|+||.+ |++|+|+|++++  .+....
T Consensus       191 ~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~riG~~~~~~~~~~~~  269 (397)
T 3fsl_A          191 TNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIF-SLYGERVGGLSVMCEDAEAA  269 (397)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTT-TCGGGCCEEEEEECSSHHHH
T ss_pred             CHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccc-cCcCCCeeEEEEecCCHHHH
Confidence            5   669999999999999999999754422          012346789999999999 778999999986  333333


Q ss_pred             H-HHHHHHH---hcCCCCChhhHHHHhhccc----------cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCc
Q 021783          143 K-ELYFLQN---AEGSGLAPFDCWICLRGVK----------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG  208 (307)
Q Consensus       143 ~-~~~~~~~---~~~~~~~~~~~~~~~~~l~----------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~  208 (307)
                      . .......   ......+...+..+...+.          .+....+.+.++.+.+.+.|++...      .     .+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~------~-----~~  338 (397)
T 3fsl_A          270 GRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMP------E-----RN  338 (397)
T ss_dssp             HHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT------T-----SC
T ss_pred             HHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------C-----CC
Confidence            2 2222221   2222333333333332222          2333445555666666666664320      0     01


Q ss_pred             hHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc
Q 021783          209 HELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  288 (307)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~  288 (307)
                      +....+   ..+.++++.++    ...+...+.++||.+++|+                               |||++.
T Consensus       339 ~~~~~~---~~~~~~~~~~~----~~~~~~~l~~~gi~v~~g~-------------------------------Ris~~~  380 (397)
T 3fsl_A          339 FDYLLN---QRGMFSYTGLS----AAQVDRLREEFGVYLIASG-------------------------------RMCVAG  380 (397)
T ss_dssp             CTHHHH---CCSSEEECCCC----HHHHHHHHHTTCEECCTTC-------------------------------EEEGGG
T ss_pred             ceeecC---CceEEEecCCC----HHHHHHHHHhCCEEECCCC-------------------------------eEEEEe
Confidence            112111   12334444443    2335555667889876532                               677754


Q ss_pred             ---CChHHHHHHHHHH
Q 021783          289 ---EDVNDLISDLDKA  301 (307)
Q Consensus       289 ---~~~~~~i~~l~~~  301 (307)
                         +++++.++.|.++
T Consensus       381 ~~~~~i~~~~~~l~~~  396 (397)
T 3fsl_A          381 LNTANVQRVAKAFAAV  396 (397)
T ss_dssp             CCTTTHHHHHHHHHHH
T ss_pred             cCHhhHHHHHHHHHhh
Confidence               6677777777665

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.90  E-value=2.7e-23  Score=184.28  Aligned_cols=270  Identities=19%  Similarity=0.168  Sum_probs=157.5

Q ss_pred             CCCCeEEEcCCCCcc-------------hHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCC
Q 021783           12 GTGEEIVAGDDLYGG-------------TDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNP   72 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~-------------~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~   72 (307)
                      ++||+|+++.|+|..             ....+..+++..|++++.++.+      |++++++++++++++|++++++||
T Consensus       108 ~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~np  187 (432)
T 3a9z_A          108 LQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNE  187 (432)
T ss_dssp             HC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEECCSBCTT
T ss_pred             cCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCCceEEEEECcccC
Confidence            589877777776654             3344445566789999999863      789999999989999999999999


Q ss_pred             ccccccHHHHHHHHHHcC----------CEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhH
Q 021783           73 RQQICDIRKIAEMAHAHG----------ALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        73 tG~~~~~~~l~~~~~~~~----------~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~  141 (307)
                      ||.+.|+++|.++|+++|          +++|+|++|+.+..+ +....+.|++++|+||++ |+.   +|+++++++..
T Consensus       188 tG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~~~d~~~~s~~K~~-g~~---~G~~~~~~~~~  263 (432)
T 3a9z_A          188 TGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFY-GPR---IGALYVRGVGK  263 (432)
T ss_dssp             TCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHHCCSEEEEEGGGTT-CCS---CEEEEETTBTT
T ss_pred             cccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhcCCCEEEEehhHhc-CCc---ceEEEEccccc
Confidence            999999999999999999          999999999877644 333457899999999988 543   89999986541


Q ss_pred             HHHHHHH-------HHhcCCCCChhhHHHHhhccccHH----HHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchH
Q 021783          142 AKELYFL-------QNAEGSGLAPFDCWICLRGVKTMA----LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE  210 (307)
Q Consensus       142 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~  210 (307)
                      ...+...       ......+.+.........+++.+.    ...+...+..+.+.+.|++.+++ .+....-.  +   
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~~~~~--~---  337 (432)
T 3a9z_A          264 LTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERLEAEFGK-RIHLNSRF--P---  337 (432)
T ss_dssp             TBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG-GEEESSCC--T---
T ss_pred             cCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCC-cEEEeCCC--C---
Confidence            1111100       011112233333333333443322    23334444555555555543211 11111100  0   


Q ss_pred             HHhhhccCCCceEEEEeCCH-HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCC----CCeEEEE
Q 021783          211 LHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRIS  285 (307)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~iRis  285 (307)
                          ..+..+++++|.+.+. .....+.+.+.  ++.++.|..+...    .   ...........|..    ++++|||
T Consensus       338 ----~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~G~~~~~~----~---~~~~~~~l~~~g~~~~~~~~~iRis  404 (432)
T 3a9z_A          338 ----GVERLPNTCNFSIQGSQLRGYMVLAQCQ--TLLASVGASCHSD----H---EDRPSPVLLSCGIPVDVARNAVRLS  404 (432)
T ss_dssp             ----TCCBCTTEEEEEECSTTCCHHHHHHHCS--SEECBSSCGGGGG----G---TTSCCHHHHHTTCCHHHHTTEEEEE
T ss_pred             ----cccCCCCEEEEEeCCCCCcHHHHHHHhc--CeEEeccccccCC----C---CCCccHHHHhcCCCccccCceEEEE
Confidence                0012345777877542 12456666664  6888877653311    0   00011222334432    4789999


Q ss_pred             ecc----CChHHHHHHHHHHHhc
Q 021783          286 VGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       286 ~~~----~~~~~~i~~l~~~l~~  304 (307)
                      ++.    ++++++++.|++++++
T Consensus       405 ~~~~~t~eei~~~~~~l~~~~~~  427 (432)
T 3a9z_A          405 VGRSTTRAEVDLIVQDLKQAVNQ  427 (432)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHH
Confidence            984    6677777777776653

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.90  E-value=2.7e-23  Score=187.34  Aligned_cols=246  Identities=15%  Similarity=0.118  Sum_probs=171.9

Q ss_pred             eEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHc
Q 021783           16 EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH   89 (307)
Q Consensus        16 ~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~~   89 (307)
                      +|+++.++|.++.    ..++..|++++.+|.+      |+++++++++++|++|++++++||||.+.|+++|.++|+++
T Consensus       156 ~vi~~~~~h~s~~----~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~  231 (502)
T 3hbx_A          156 NIVTGANVQVCWE----KFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEK  231 (502)
T ss_dssp             EEEEETTCCHHHH----HHHHHTTCEEEEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHH
T ss_pred             EEEEcCCchHHHH----HHHHHcCceeEEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccCHHHHHHHHHHh
Confidence            9999999998877    6678889999999863      88999999999999999999999999999999999999999


Q ss_pred             ------CCEEEEeCccCCCC-------cC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHH-HHHHHHHHhcC-
Q 021783           90 ------GALLLVDNSIMSPV-------LS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA-KELYFLQNAEG-  153 (307)
Q Consensus        90 ------~~~li~D~a~~~~~-------~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~-~~~~~~~~~~~-  153 (307)
                            |+++++|++|+.+.       .. +....++|++++|+||++.++.|  +|+++++++... +.+.....+.+ 
T Consensus       232 ~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g--~G~~~~~~~~~l~~~~~~~~~yl~~  309 (502)
T 3hbx_A          232 NKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAG--IGWVIWRNKEDLPEELIFHINYLGA  309 (502)
T ss_dssp             HHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSS--CEEEEESSGGGSCGGGCEEECSSSS
T ss_pred             hhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCC--eEEEEEeCHHHhhHHhccCcccccC
Confidence                  99999999998433       11 22234799999999999988877  898888765432 11110001111 


Q ss_pred             ---------CCC--ChhhHHHHhh--ccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCC
Q 021783          154 ---------SGL--APFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG  220 (307)
Q Consensus       154 ---------~~~--~~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  220 (307)
                               +..  ....+|.++.  +.+.+..+.++..++++.+.+.|+..+.+. +..+               ....
T Consensus       310 ~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~-~~~~---------------~~~~  373 (502)
T 3hbx_A          310 DQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFN-IVSK---------------DEGV  373 (502)
T ss_dssp             CEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEE-ECSC---------------SSSS
T ss_pred             CCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE-EEeC---------------CCCc
Confidence                     111  1223333333  234556777888888889999998775431 1111               0135


Q ss_pred             ceEEEEeCCH--HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHH
Q 021783          221 SVLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDL  294 (307)
Q Consensus       221 ~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~  294 (307)
                      ++++|.+.+.  .....+.+.|...|+.++.      ...|...              .+..++|++++.    ++++.+
T Consensus       374 ~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~------~~~p~~~--------------~~~~~lRisv~~~~t~edid~l  433 (502)
T 3hbx_A          374 PLVAFSLKDSSCHTEFEISDMLRRYGWIVPA------YTMPPNA--------------QHITVLRVVIREDFSRTLAERL  433 (502)
T ss_dssp             SEEEEEESSCSSCCHHHHHHHHHTTTCBCCE------EECCTTC--------------TTCEEEEEECCTTCCHHHHHHH
T ss_pred             eEEEEEecCCCcCCHHHHHHHHHhCCcEEee------ccCCccc--------------CCceEEEEEeCCCCCHHHHHHH
Confidence            6888888542  2355788888888887743      1122110              124579999984    677777


Q ss_pred             HHHHHHHHh
Q 021783          295 ISDLDKALR  303 (307)
Q Consensus       295 i~~l~~~l~  303 (307)
                      ++.|+++++
T Consensus       434 i~~L~~~l~  442 (502)
T 3hbx_A          434 VIDIEKVMR  442 (502)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777777664

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.90  E-value=2.6e-22  Score=177.21  Aligned_cols=227  Identities=19%  Similarity=0.179  Sum_probs=153.4

Q ss_pred             HH-HHHHHh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.++ +++||+|+++.++|.++.    ..++..|++++.++.+      |++++++.+++++++|+++   ||||
T Consensus        69 al~~~~~~~~~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~~G  141 (418)
T 2c81_A           69 ALMLALEALGIGEGDEVIVPSLTWIATA----TAVLNVNALPVFVDVEADTYCIDPQLIKSAITDKTKAIIPV---HLFG  141 (418)
T ss_dssp             HHHHHHHHTTCCTTCEEEEESSSCTHHH----HHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCTTEEEECCB---CCTT
T ss_pred             HHHHHHHHcCCCCcCEEEECCCccHhHH----HHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCCCCeEEEEe---CCcC
Confidence            44 455566 789999999999999888    4456789999999874      7899999999889988864   5899


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCccCCCC-cC--CccCCCccEEEecc--ccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           75 QICDIRKIAEMAHAHGALLLVDNSIMSPV-LS--RPLELGADIVMHSA--TKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        75 ~~~~~~~l~~~~~~~~~~li~D~a~~~~~-~~--~~~~~~~d~~~~s~--~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                      ...++++|.++|+++|+++|+|++|+.+. ..  ....+ .|+.+.||  ||++ ++ | ++|+++.+++.+.+.+....
T Consensus       142 ~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~-~~~~~~s~s~~K~~-~~-g-~~g~~~~~~~~l~~~~~~~~  217 (418)
T 2c81_A          142 SMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTI-GDIGAFSCQQGKVL-TA-G-EGGIIVTKNPRLFELIQQLR  217 (418)
T ss_dssp             CCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEEECCTTSSS-CS-S-SCEEEEESCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHCCCEEEEECcccccCccCCEecccc-cceEEEeccCCccc-CC-C-CeEEEEECCHHHHHHHHHHH
Confidence            99999999999999999999999999876 22  11122 36777777  9999 44 5 69999997665655554433


Q ss_pred             HhcC------------CC--------------CChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCC
Q 021783          150 NAEG------------SG--------------LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL  203 (307)
Q Consensus       150 ~~~~------------~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l  203 (307)
                      ....            ..              +....+.+....++.++...++..++.+.+.+.|+..+++. +..+. 
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~-  295 (418)
T 2c81_A          218 ADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALSKIDGIK-VMKRP-  295 (418)
T ss_dssp             BTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEE-ECCCC-
T ss_pred             HhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-cCCCC-
Confidence            2211            00              11222334334455666666777777778888887654331 11000 


Q ss_pred             CCCCchHHHhhhccCCCceEEEEeCC----HHHHHHHHhcCCcc-eee---cCCCC
Q 021783          204 PEHPGHELHYSQAKGAGSVLSFLTGS----LALSKHVVETTKYF-SIT---VSFGS  251 (307)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~-gi~---v~~g~  251 (307)
                      +.         .......++.+.+++    ......+.+.|..+ ||.   ++.|.
T Consensus       296 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~  342 (418)
T 2c81_A          296 PQ---------VSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPY  342 (418)
T ss_dssp             TT---------EEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCC
T ss_pred             CC---------CcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccc
Confidence            00         000011355567752    22367888888888 998   87765

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.90  E-value=4.6e-22  Score=174.22  Aligned_cols=243  Identities=16%  Similarity=0.101  Sum_probs=156.1

Q ss_pred             HHHHhcC--CCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcC--CCceEEEEeCC-CCCc
Q 021783            6 AVTHLLG--TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG--PWTKLVWVESP-TNPR   73 (307)
Q Consensus         6 ~~~~~~~--~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~--~~~~~v~~~~~-~n~t   73 (307)
                      ++..+..  | |+|++++|+|+.+.    ..++..|++++.++..       |++++++.+.  +++++++++++ ||||
T Consensus       113 ~~~~l~~~~~-d~Vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPT  187 (405)
T 3k7y_A          113 LLEFLKMLNV-ETLYVTNPPYINHV----NMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPC  187 (405)
T ss_dssp             HHHHHHTTTC-CEEEEESSCCHHHH----HHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTT
T ss_pred             HHHHHHhcCC-CEEEEeCCCCHhHH----HHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCC
Confidence            3334555  8 99999999999888    6678899999999861       7899999886  46788888754 8999


Q ss_pred             ccccc---HHHHHHHHHHcCCEEEEeCccCCCCcCC-----------ccCCCccEEEeccccccccCCCceeEEEEE--c
Q 021783           74 QQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----------PLELGADIVMHSATKFIAGHSDVMAGVLAV--K  137 (307)
Q Consensus        74 G~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~-----------~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~--~  137 (307)
                      |.+++   +++|+++|++||+++|+|++|..-....           ....+..++++||||.| +.+|+|+||+++  .
T Consensus       188 G~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~l~GlRiG~~~~~~~  266 (405)
T 3k7y_A          188 SVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNM-SLYGERAGALHIVCK  266 (405)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTS-CCTTTTEEEEEEECS
T ss_pred             CCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccC-CCccccceEEEEEeC
Confidence            99996   7788999999999999999997432210           01224689999999999 778999999864  4


Q ss_pred             ChhHHHHHH----HHHHhcCCCCChhhHHHHhhcccc----------HHHHHHHHHHHHHHHHHHHh----cCCCccEEe
Q 021783          138 GERLAKELY----FLQNAEGSGLAPFDCWICLRGVKT----------MALRVEKQQDNAQKIAEFLA----SHPRVKKVN  199 (307)
Q Consensus       138 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~l~~~l~----~~~~~~~~~  199 (307)
                      ++.+.+.+.    .......+..+...+..+...++.          +....+++.++.+.+.+.|+    +...     
T Consensus       267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~-----  341 (405)
T 3k7y_A          267 NQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNL-----  341 (405)
T ss_dssp             SHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTC-----
T ss_pred             CHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC-----
Confidence            444433332    222222233333444443333322          12222334555556666665    3310     


Q ss_pred             cCCCCCCCchHHHhhhccCCCceEEE-EeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCC
Q 021783          200 YAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT  278 (307)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~  278 (307)
                       +     ..+...    ...++++.| .++.     ++.+.|.++||.+.+|                            
T Consensus       342 -~-----~~~~~~----~p~gg~f~~~~l~~-----~~~~~L~~~gV~v~p~----------------------------  378 (405)
T 3k7y_A          342 -N-----YDWNVY----KKQRGLFSFVPLLA-----KIAEHLKTHHIYIINN----------------------------  378 (405)
T ss_dssp             -C-----CCGGGG----SSCCSSEEECGGGG-----GGTTTTTTTTEECCTT----------------------------
T ss_pred             -C-----CCCccc----cCCceEEEecCCCH-----HHHHHHHHCCEeecCC----------------------------
Confidence             0     011111    113454444 3332     3345566677866541                            


Q ss_pred             CCeEEEEec---cCChHHHHHHHHHHHhcC
Q 021783          279 EDLVRISVG---IEDVNDLISDLDKALRTG  305 (307)
Q Consensus       279 ~~~iRis~~---~~~~~~~i~~l~~~l~~~  305 (307)
                         -|||++   .++++++++.|.++++++
T Consensus       379 ---~Ris~a~~~~~~i~~~~~~i~~~~~~~  405 (405)
T 3k7y_A          379 ---GRINVSGITKNNVDYIADKICLSLSQI  405 (405)
T ss_dssp             ---SEEEGGGCCTTHHHHHHHHHHHHHHCC
T ss_pred             ---CeEEEeccCHHHHHHHHHHHHHHHhhC
Confidence               289995   278899999999988753

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.90  E-value=1.1e-22  Score=178.01  Aligned_cols=239  Identities=14%  Similarity=0.134  Sum_probs=156.0

Q ss_pred             CCeEEEcCCCCcchHHHHhhhccc---------CCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCcccccc----HH
Q 021783           14 GEEIVAGDDLYGGTDRLLSRVTPK---------TGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD----IR   80 (307)
Q Consensus        14 gd~Vlv~~~~~~~~~~~~~~~~~~---------~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~----~~   80 (307)
                      ||+|+++.++|++...........         ....+..++.+|++++++.+++++++|++++++||||.+.|    ++
T Consensus       127 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~  206 (392)
T 3ruy_A          127 RAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAITPNTAAFILEPIQGEAGINIPPAGFLK  206 (392)
T ss_dssp             CCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTCHHHHHHHCCTTEEEEEECSSBSTTTSBCCCTTHHH
T ss_pred             CcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcccHHHHHHHhccCeEEEEEeCccCCCCCccCCHHHHH
Confidence            679999999997665433222111         01236677778999999999999999999999999999998    99


Q ss_pred             HHHHHHHHcCCEEEEeCccC-CCCc---CCccCC--CccEEEeccccccccCCC-ceeEEEEEcChhHHHHHHHHHHhcC
Q 021783           81 KIAEMAHAHGALLLVDNSIM-SPVL---SRPLEL--GADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELYFLQNAEG  153 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~-~~~~---~~~~~~--~~d~~~~s~~K~~~g~~g-~~~G~~~~~~~~~~~~~~~~~~~~~  153 (307)
                      +|.++|++||+++|+|++|+ .+..   ......  ..|++  ++||+++|  | +++|+++++++ +.+.+........
T Consensus       207 ~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--~~SK~l~g--G~~~~G~~~~~~~-~~~~~~~~~~~~~  281 (392)
T 3ruy_A          207 EALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMY--ILGKALGG--GVFPISCAAANRD-ILGVFEPGSHGST  281 (392)
T ss_dssp             HHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT--TTSCCEEEEECHH-HHTTCCTTSSCCS
T ss_pred             HHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEE--EEchhhhC--ChhhhEEEEECHH-HHhhhccCCcCCC
Confidence            99999999999999999996 2221   112222  34665  66799854  5 77999999754 4333322222233


Q ss_pred             CCCChhhHHHHhhccccHH--HHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHH
Q 021783          154 SGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA  231 (307)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (307)
                      ...++..+..+...++.+.  ...++..++.+.+.+.+++...      +      .+.    ..++.+++++|.+++  
T Consensus       282 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~------~------~~~----~~~~~g~~~~~~~~~--  343 (392)
T 3ruy_A          282 FGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDN------P------MIT----EVRGKGLFIGIELNE--  343 (392)
T ss_dssp             STTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCCC------T------TEE----EEEEETTEEEEEESS--
T ss_pred             CCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcC------C------Cce----EEEeeeeEEEEEEcc--
Confidence            3455566666666655432  2234445555566666654310      1      000    012246788888865  


Q ss_pred             HHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHH
Q 021783          232 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKAL  302 (307)
Q Consensus       232 ~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l  302 (307)
                      ....+.+.|..+||.+++|.                           ++++|++++.    ++++++++.|.+++
T Consensus       344 ~~~~l~~~l~~~gi~v~~~~---------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l  391 (392)
T 3ruy_A          344 PARPYCEQLKAAGLLCKETH---------------------------ENVIRIAPPLVISEEDLEWAFQKIKAVL  391 (392)
T ss_dssp             CSHHHHHHHHTTTEECCCBT---------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHCCcEEecCC---------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            36778888888899887643                           3469999765    45556666665554

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.90  E-value=8.8e-23  Score=182.01  Aligned_cols=249  Identities=12%  Similarity=-0.028  Sum_probs=166.9

Q ss_pred             CeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHH
Q 021783           15 EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA   88 (307)
Q Consensus        15 d~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~   88 (307)
                      ++|++++ .|.++.    ..++..|++++.+|.+      |+++|+++++++|++|++++++||||.+.|+++|.++|++
T Consensus       141 ~~vi~~~-~h~~~~----~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~  215 (452)
T 2dgk_A          141 PNLVCGP-VQICWH----KFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDK  215 (452)
T ss_dssp             CEEEESS-CCHHHH----HHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHH
T ss_pred             cEEEECC-CcHHHH----HHHHHcCceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHH
Confidence            6999999 997777    6677889999999874      7999999999999999999999999999999999999999


Q ss_pred             c------CCEEEEeCccCCCCc-------C-CccCCCccEEEeccccccccCCCceeEEEEEcChhH-HHHHHHHHHhc-
Q 021783           89 H------GALLLVDNSIMSPVL-------S-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL-AKELYFLQNAE-  152 (307)
Q Consensus        89 ~------~~~li~D~a~~~~~~-------~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~-~~~~~~~~~~~-  152 (307)
                      +      |+++++|++|+.+..       . +....++|++++|+||++.++.+  +|+++++++.. .+.+.....+. 
T Consensus       216 ~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~  293 (452)
T 2dgk_A          216 FQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLG--CGWVIWRDEEALPQELVFNVDYLG  293 (452)
T ss_dssp             HHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSS--CEEEEESSGGGSCGGGCEEECCTT
T ss_pred             HhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCC--eEEEEEcCHHHHHHHhccCccccC
Confidence            6      999999999986532       1 11233789999999998866666  99999986532 12221000111 


Q ss_pred             ---------CCCC--ChhhHHHHhhc--cccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCC
Q 021783          153 ---------GSGL--APFDCWICLRG--VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  219 (307)
Q Consensus       153 ---------~~~~--~~~~~~~~~~~--l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (307)
                               ++..  ....+|.++..  .+.+....++..++++.+.+.|++.+.+. +..+..            +...
T Consensus       294 ~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~-~~~~~~------------~~~~  360 (452)
T 2dgk_A          294 GQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYE-FICTGR------------PDEG  360 (452)
T ss_dssp             CCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-EEEECC------------TTTB
T ss_pred             CCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeE-EecCCC------------CCCC
Confidence                     0111  11233333332  23445566777778888888888765432 221210            0013


Q ss_pred             CceEEEEeCCH----HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CCh
Q 021783          220 GSVLSFLTGSL----ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDV  291 (307)
Q Consensus       220 ~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~  291 (307)
                      .++++|.+++.    .+...+.+.|...||.++..      ..|...              ...+++|++++.    +++
T Consensus       361 ~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~------~~~~~~--------------~~~~~lRis~~~~~t~e~i  420 (452)
T 2dgk_A          361 IPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAF------TLGGEA--------------TDIVVMRIMCRRGFEMDFA  420 (452)
T ss_dssp             SSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEE------ECSTTC--------------TTCEEEEEECCTTCCHHHH
T ss_pred             eEEEEEEecCcccccCCHHHHHHHHHhcCCeeeee------eCCccc--------------CCeEEEEEEecCCCCHHHH
Confidence            57888888642    12467778887788866531      111100              024579999986    566


Q ss_pred             HHHHHHHHHHHh
Q 021783          292 NDLISDLDKALR  303 (307)
Q Consensus       292 ~~~i~~l~~~l~  303 (307)
                      +++++.|+++++
T Consensus       421 d~li~~l~~~~~  432 (452)
T 2dgk_A          421 ELLLEDYKASLK  432 (452)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666666554

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.89  E-value=2.7e-22  Score=176.41  Aligned_cols=259  Identities=19%  Similarity=0.158  Sum_probs=168.6

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCc--EEEEecC------CChHHHHhhcCC-CceEEEEeCCCCCccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV--VVKRVNT------CDLDEVASAIGP-WTKLVWVESPTNPRQQ   75 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~--~~~~v~~------~d~~~l~~~l~~-~~~~v~~~~~~n~tG~   75 (307)
                      .++.+++++||+|++++|+|+++.... ..++..|.  .++.++.      .|++++++.+++ ++++|++++|+||  .
T Consensus       100 ~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~--~  176 (407)
T 2dkj_A          100 AVYMALMEPGDTLMGMDLAAGGHLTHG-SRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYP--R  176 (407)
T ss_dssp             HHHHHHCCTTCEEEEECGGGTCCGGGT-CTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEECCSSCC--S
T ss_pred             HHHHHhcCCCCEEEEecccccCccchH-HHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhcCCeEEEEeccccC--C
Confidence            445556899999999999998873111 33444555  4555532      378999999874 8899999889986  6


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCccCCCCcC-----CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHH
Q 021783           76 ICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  150 (307)
Q Consensus        76 ~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~  150 (307)
                      ..|+++|.++|++||+++|+|++|+.|...     .... ..|++++|+||+++|+.   +|+++++++.+.+.+.....
T Consensus       177 ~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g~~---~G~~~~~~~~~~~~l~~~~~  252 (407)
T 2dkj_A          177 FWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP-YAHVVTSTTHKTLRGPR---GGLILSNDPELGKRIDKLIF  252 (407)
T ss_dssp             CCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT-TCSEEEEESSGGGCCCS---CEEEEESCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccc-cccEEEEeccccCCCCC---ceEEEECCHHHHHHHHhhhc
Confidence            789999999999999999999999864321     1112 37999999999886544   79999985455555544432


Q ss_pred             h-cCCCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEE
Q 021783          151 A-EGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  224 (307)
Q Consensus       151 ~-~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  224 (307)
                      . ..++...........+++     .+....++..++.+.+.+.|++. ++ .             +..+  +..+++++
T Consensus       253 ~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~-------------~~~~--~~~~~~~~  315 (407)
T 2dkj_A          253 PGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR-GY-R-------------IVTG--GTDNHLFL  315 (407)
T ss_dssp             TTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TC-E-------------EGGG--SCSSSEEE
T ss_pred             ccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-Cc-e-------------eecC--CCCceEEE
Confidence            2 222333322222223322     23444555666667777777654 21 1             1111  12467888


Q ss_pred             EEeCCH-HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec--------cCChHHHH
Q 021783          225 FLTGSL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--------IEDVNDLI  295 (307)
Q Consensus       225 ~~~~~~-~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~--------~~~~~~~i  295 (307)
                      +.++.. .....+.+.|..+||.++.|..+....                 ....++++|+|++        .+++++++
T Consensus       316 ~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~-----------------~~~~~~~iRis~~~~~~~~~~~~~i~~~~  378 (407)
T 2dkj_A          316 VDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPK-----------------PPRVTSGIRIGTPAITTRGFTPEEMPLVA  378 (407)
T ss_dssp             EECGGGTCCHHHHHHHHHHTTEECEECCCTTCSS-----------------CTTTCSEEEEECHHHHHTTCCGGGHHHHH
T ss_pred             EECcccCCCHHHHHHHHHHcCceecCCcCccccc-----------------cccCCCceeeecccccccCCCHHHHHHHH
Confidence            887531 136677788888899888776421000                 0012567999994        37899999


Q ss_pred             HHHHHHHhc
Q 021783          296 SDLDKALRT  304 (307)
Q Consensus       296 ~~l~~~l~~  304 (307)
                      +.|.+++++
T Consensus       379 ~~l~~~~~~  387 (407)
T 2dkj_A          379 ELIDRALLE  387 (407)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999888764

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.89  E-value=3.8e-23  Score=182.77  Aligned_cols=250  Identities=18%  Similarity=0.162  Sum_probs=163.6

Q ss_pred             cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcC
Q 021783           11 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG   90 (307)
Q Consensus        11 ~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~~~   90 (307)
                      ++|||+|+++.|+|+.+.    ..++..|++++.... |++++++.+++++++|++++|+||||.+++ + +   ++  +
T Consensus       152 ~~~Gd~Vlv~~P~y~~~~----~~~~~~g~~~~~~~~-d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~-~-~---l~--~  219 (427)
T 2hox_A          152 DAPESKVVAHAPFYPVFR----EQTKYFDKKGYVWAG-NAANYVNVSNPEQYIEMVTSPNNPEGLLRH-A-V---IK--G  219 (427)
T ss_dssp             TSCCEEEEECSSCCHHHH----HHHHHSCBTTEEEEE-EGGGGTTCSCGGGEEEEEESSCTTTCCCCC-C-S---ST--T
T ss_pred             CCCCCEEEEeCCCcccHH----HHHHHcCCeeeeecC-CHHHHHHhhcCCceEEEEcCCCCCcccccH-H-H---Hc--C
Confidence            889999999999998877    455667877665543 788898888888999999999999999999 3 2   33  6


Q ss_pred             CEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccc
Q 021783           91 ALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  169 (307)
Q Consensus        91 ~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  169 (307)
                      +..++|+++..+... .....+.+++++||||.+ |++|+|+|+++++++.+.+.+...........+...+..+...++
T Consensus       220 ~~~i~d~~~~~~~~s~~~~~~~~~i~~~S~SK~~-g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~  298 (427)
T 2hox_A          220 CKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFT-GHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLK  298 (427)
T ss_dssp             CEEEEECTTCSTTTSCCCSCBCCSEEEEEHHHHT-SCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred             CCEEEeecccCCCCCccccCCCceEEEEeChhcC-CCCCceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Confidence            678999887532211 111257899999999999 678999999999766676666666555444455554444444433


Q ss_pred             c---------------HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCc----hHHHhhhccCCCceEEEEeCCH
Q 021783          170 T---------------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG----HELHYSQAKGAGSVLSFLTGSL  230 (307)
Q Consensus       170 ~---------------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~  230 (307)
                      .               +....+.+.++.+.+.+.|++.+++   ....+.. |.    +...  . ...+.++++.++. 
T Consensus       299 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~---~~~~~~~-~~~~~~~~~~--~-p~~g~f~~~~~~~-  370 (427)
T 2hox_A          299 EVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRF---SYQELPQ-SEYCNYFRRM--R-PPSPSYAWVKCEW-  370 (427)
T ss_dssp             HHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSE---ECCCCCS-CEEETTTTEE--E-CCCCSEEEEEECS-
T ss_pred             cchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCc---ccccccc-cccccccccc--C-CCCceEEEEECCC-
Confidence            2               2233455566667777777765432   1110000 00    1110  1 1235677778864 


Q ss_pred             HHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 021783          231 ALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  304 (307)
Q Consensus       231 ~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  304 (307)
                      + ..++.+.+ .++||.+++|..|.                      ..++++|||++.  +++++.++.|.+.+++
T Consensus       371 ~-~~~~~~~ll~~~gI~v~pg~~f~----------------------~~~~~~Ris~~~~~e~l~~~l~~l~~~~~~  424 (427)
T 2hox_A          371 E-EDKDCYQTFQNGRINTQNGVGFE----------------------ASSRYVRLSLIKTQDDFDQLMYYLKDMVKA  424 (427)
T ss_dssp             G-GGCSHHHHHHHTTEECEEGGGGT----------------------SCTTEEEEECSSCHHHHHHHHHHHHHHHTC
T ss_pred             c-HHHHHHHHHHHCCEEEcCCCccC----------------------CCCCEEEEEecCCHHHHHHHHHHHHHHHhh
Confidence            2 33344443 46799998887632                      135789999986  4566677777776643

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.89  E-value=2.1e-21  Score=167.51  Aligned_cols=244  Identities=16%  Similarity=0.126  Sum_probs=155.9

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhh--cccC--CcEEEEecCC----ChHHHHh-hcCC-------CceEEEEeC
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRV--TPKT--GVVVKRVNTC----DLDEVAS-AIGP-------WTKLVWVES   68 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~--~~~~--g~~~~~v~~~----d~~~l~~-~l~~-------~~~~v~~~~   68 (307)
                      .++.+++++||+|++++++|++..    ..  +...  |++++.+|.+    |++++++ .+++       ++++|++++
T Consensus        74 ~al~~~~~~gd~vi~~~~~~~~~~----~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~  149 (356)
T 1v72_A           74 LCLSAMTPPWGNIYCHPASHINND----ECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQ  149 (356)
T ss_dssp             HHHHTSCCTTEEEEECTTSHHHHS----STTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEES
T ss_pred             HHHHHhcCCCCEEEEcCccchhhh----hchHHHHHhCCcEEEEecCCCCeEcHHHHHHHhhhcchhhccCCceEEEEEc
Confidence            455567789999999999987765    33  3444  8999999875    8999999 8875       689999999


Q ss_pred             CCCCccccc---cHHHHHHHHHHcCCEEEEeCccCCC------CcCCcc--CCCccEEEeccccccccCCCceeEEEEEc
Q 021783           69 PTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSP------VLSRPL--ELGADIVMHSATKFIAGHSDVMAGVLAVK  137 (307)
Q Consensus        69 ~~n~tG~~~---~~~~l~~~~~~~~~~li~D~a~~~~------~~~~~~--~~~~d~~~~s~~K~~~g~~g~~~G~~~~~  137 (307)
                      |+| ||.++   ++++|.++|++||+++|+|++|+.+      ......  ..+.|+++.|+||+ +++.|  .|+++++
T Consensus       150 ~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G--~g~~~~~  225 (356)
T 1v72_A          150 ATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAA--EAIVLFN  225 (356)
T ss_dssp             SCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSC--EEEEESS
T ss_pred             CCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCc--cEEEEEC
Confidence            876 99954   5899999999999999999998632      111111  13678999999999 45544  5688876


Q ss_pred             ChhHHHHHHHHHHhcCCCCC--hhhHHHHhhcccc--HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHh
Q 021783          138 GERLAKELYFLQNAEGSGLA--PFDCWICLRGVKT--MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  213 (307)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~  213 (307)
                      ++ +.+.+.......+....  ..........++.  +....++..++.+.+.+.|++.+++. +..+            
T Consensus       226 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~------------  291 (356)
T 1v72_A          226 TS-LATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVE-VLGG------------  291 (356)
T ss_dssp             GG-GHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEE-EESC------------
T ss_pred             HH-HHhhHHHHhhccCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcE-EccC------------
Confidence            54 44444433333332111  1111112222221  22334455666667777776543321 1111            


Q ss_pred             hhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----C
Q 021783          214 SQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----E  289 (307)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~  289 (307)
                          ..++++++.++.     .+.+.|..+||.++.|..                         +++++|++++.    +
T Consensus       292 ----~~~~~~~~~~~~-----~~~~~l~~~gi~v~~g~~-------------------------~~~~iRi~~~~~~~~~  337 (356)
T 1v72_A          292 ----TEANILFCRLDS-----AMIDALLKAGFGFYHDRW-------------------------GPNVVRFVTSFATTAE  337 (356)
T ss_dssp             ----CCSSEEEEEECH-----HHHHHHHHTTCBCBCSSS-------------------------STTEEEEECCTTCCHH
T ss_pred             ----CCccEEEEEcCH-----HHHHHHHhcCeEEecccc-------------------------CCCeEEEEecCCCCHH
Confidence                135677777752     566666677888876542                         03569999875    5


Q ss_pred             ChHHHHHHHHHHHhc
Q 021783          290 DVNDLISDLDKALRT  304 (307)
Q Consensus       290 ~~~~~i~~l~~~l~~  304 (307)
                      +++++++.|.+++++
T Consensus       338 ~i~~~~~~l~~~l~~  352 (356)
T 1v72_A          338 DVDHLLNQVRLAADR  352 (356)
T ss_dssp             HHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHh
Confidence            566666666665543

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.89  E-value=6e-23  Score=177.49  Aligned_cols=225  Identities=12%  Similarity=0.025  Sum_probs=146.4

Q ss_pred             HHHHHhcCCCC--eEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcCCCceEEEEeCCCCCc-cccc
Q 021783            5 AAVTHLLGTGE--EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPWTKLVWVESPTNPR-QQIC   77 (307)
Q Consensus         5 ~~~~~~~~~gd--~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~~~~~~v~~~~~~n~t-G~~~   77 (307)
                      .++.+++++||  +|+++++.|+..... ...+...|++++.++.+    |+++++++.  +++++++++|+||+ |.++
T Consensus        77 ~al~~~~~~gd~~~vi~~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~  153 (357)
T 3lws_A           77 VALRIWSDETDNRTVAYHPLCHLEIHEQ-DGLKELHPIETILVGAADRLMTLDEIKALP--DIACLLLELPQREIGGVAP  153 (357)
T ss_dssp             HHHHHHHHHHTCCEEEECTTCHHHHSST-THHHHHSSCEEEECSCTTSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCC
T ss_pred             HHHHHHhhcCCCcEEEecccceeeeecc-chhhhccCcEEEEecCCCCCcCHHHHhcCc--CcceEEEEcccccCCceeC
Confidence            45556778888  788877776544310 01234458999998863    889998873  48999999999998 9887


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCccCC------CCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH
Q 021783           78 D---IRKIAEMAHAHGALLLVDNSIMS------PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  148 (307)
Q Consensus        78 ~---~~~l~~~~~~~~~~li~D~a~~~------~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~  148 (307)
                      +   +++|.++|++||+++|+|++|..      +........+.|+++.|+||+++++.   +|+++.+++ +.+.+...
T Consensus       154 ~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~---gg~~~~~~~-~~~~~~~~  229 (357)
T 3lws_A          154 AFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIA---GAILAGPAA-FCQTARIW  229 (357)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCSS---CEEEEECHH-HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEeccccCCCCc---eEEEEcCHH-HHHHHHHH
Confidence            5   89999999999999999999861      11111111347888999999997765   488887654 55555444


Q ss_pred             HHhcCCCC--ChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEE
Q 021783          149 QNAEGSGL--APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  226 (307)
Q Consensus       149 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  226 (307)
                      ....+...  ....+.....+++....+.++..++.+.+.+.|++.+++.....                ...++++++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~----------------~~~~~~~~~~  293 (357)
T 3lws_A          230 KRRYGGDLISLYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPGVHTTPE----------------VPVSNMFHLH  293 (357)
T ss_dssp             HHHTTCCCSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTEEEESS----------------SCSSSEEEEE
T ss_pred             HHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeccC----------------CCcceEEEEE
Confidence            43332221  22222333334443333445556677778888876654311001                1136678888


Q ss_pred             eCCH--HHHHHHHhcCCcceeecCCCCc
Q 021783          227 TGSL--ALSKHVVETTKYFSITVSFGSV  252 (307)
Q Consensus       227 ~~~~--~~~~~~~~~l~~~gi~v~~g~~  252 (307)
                      ++..  .....+.+.|.++||.++.|..
T Consensus       294 ~~~~~~~~~~~~~~~l~~~Gi~v~~g~~  321 (357)
T 3lws_A          294 FDGQAADISPKLEQVQEETGLGFVGYLV  321 (357)
T ss_dssp             EESCHHHHHHHHHHHHHHHCEESCSCCE
T ss_pred             ecCChHHHHHHHHHHHHhcCeEEecccc
Confidence            7542  3367788888889999998854

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.89  E-value=1.6e-21  Score=170.61  Aligned_cols=265  Identities=16%  Similarity=0.152  Sum_probs=173.9

Q ss_pred             cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHH
Q 021783           11 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE   84 (307)
Q Consensus        11 ~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~   84 (307)
                      +++||+|+++.++|+++..    .++..|++++.++.+      |++++++.+++++++|++++   ++|...++++|.+
T Consensus        77 ~~~g~~Vi~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~~  149 (390)
T 3b8x_A           77 LKKGDEIIVPAVSWSTTYY----PLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVN---LLGNPNNFDEINK  149 (390)
T ss_dssp             CCTTCEEEEESSSCHHHHH----HHHHTTCEEEEECBCTTTCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCCHHHHHH
T ss_pred             CCCcCEEEECCCCcHHHHH----HHHHcCCEEEEEecCccccCcCHHHHHHHhCcCCeEEEEEC---CccChhhHHHHHH
Confidence            7899999999999998884    455689999999875      78999999998999999873   6788899999999


Q ss_pred             HHHHcCCEEEEeCccCCCCcCCccCCCc--cEEEecc--ccccccCCCceeEEEEEcChhHHHHHHHHHHhc--------
Q 021783           85 MAHAHGALLLVDNSIMSPVLSRPLELGA--DIVMHSA--TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE--------  152 (307)
Q Consensus        85 ~~~~~~~~li~D~a~~~~~~~~~~~~~~--d~~~~s~--~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~--------  152 (307)
                      +|+++|+++|+|++|+.|...+...+|.  |+.++|+  +|.+.++   ++|+++++++.+.+.+.......        
T Consensus       150 l~~~~~~~li~D~a~~~g~~~~~~~~g~~~~~~~~s~~~~k~~~~g---~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~  226 (390)
T 3b8x_A          150 IIGGRDIILLEDNCESMGATFNNKCAGTFGLMGTFSSFYSNHIATM---EGGCIVTDDEEIYHILLCIRAHGWTRNLPKK  226 (390)
T ss_dssp             HHTTSCCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCSS---SCEEEEESCHHHHHHHHHHTBTTBSTTSCSE
T ss_pred             HHHHcCCEEEEECcCcccCEECCcccccccceEEEEccCCCCCccC---CceEEEeCCHHHHHHHHHHHhcCCCcccccc
Confidence            9999999999999999887655555565  5555443  3444222   36999998765555443332111        


Q ss_pred             ---------------------CC--CCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCch
Q 021783          153 ---------------------GS--GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGH  209 (307)
Q Consensus       153 ---------------------~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~  209 (307)
                                           +.  ......+++....++.++...++..++.+.+.+.|+..+++   .....      
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~~~L~~~~~~---~~~~~------  297 (390)
T 3b8x_A          227 NKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLPRFISVRRKNAEYFLDKFKDHPYL---DVQQE------  297 (390)
T ss_dssp             ETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSE---EECCC------
T ss_pred             ccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc---ccCCC------
Confidence                                 11  14455666665666666666677777777888887765433   11110      


Q ss_pred             HHHhhhccCCCceEEEEeCC--HHHHHHHHhcCCcceeecCCCCccceeec-cccc--C---CCCCcHHHHHhcCCCCCe
Q 021783          210 ELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISM-PCFM--S---HASIPVEVRQARGLTEDL  281 (307)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~~~~~~~~-p~~~--~---~~~~~~~~~~~~~~~~~~  281 (307)
                           ..+.....+.+.+++  ......+.+.|..+||.++.....+.+.. |...  .   ...++......    ++.
T Consensus       298 -----~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  368 (390)
T 3b8x_A          298 -----TGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLD----KNG  368 (390)
T ss_dssp             -----CSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHH----HHE
T ss_pred             -----CCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHh----cCE
Confidence                 001112235556652  12367788888888998886322222333 3211  0   11232222221    246


Q ss_pred             EEEEeccCChHHHHHHHHHHHh
Q 021783          282 VRISVGIEDVNDLISDLDKALR  303 (307)
Q Consensus       282 iRis~~~~~~~~~i~~l~~~l~  303 (307)
                      +|++++....++.++.+.++|+
T Consensus       369 l~l~~~~~~t~~di~~i~~~l~  390 (390)
T 3b8x_A          369 LFVGNHQIELFDEIDYLREVLK  390 (390)
T ss_dssp             EEEECCSSCCHHHHHHHHHHTC
T ss_pred             EEeeCCCCCCHHHHHHHHHhhC
Confidence            9999999888888888887763

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.89  E-value=1.5e-22  Score=181.61  Aligned_cols=255  Identities=14%  Similarity=0.094  Sum_probs=161.8

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhh----hcccCC--cEEEEecC------CChHHHHhhcC-CCceEEEEeCCCC
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSR----VTPKTG--VVVKRVNT------CDLDEVASAIG-PWTKLVWVESPTN   71 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~----~~~~~g--~~~~~v~~------~d~~~l~~~l~-~~~~~v~~~~~~n   71 (307)
                      +++.++++|||+|++++++|+++...+..    .+...|  .+++.++.      .|++++++.++ ++|++|++ +++|
T Consensus       125 ~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~-~~sn  203 (483)
T 1rv3_A          125 AVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA-GTSC  203 (483)
T ss_dssp             HHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSS
T ss_pred             HHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE-eCCc
Confidence            55777899999999999999887632210    122333  45555532      38899999998 78999999 8888


Q ss_pred             CccccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCC---CccEEEeccccccccCCCceeEEEEEcChh-------
Q 021783           72 PRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLEL---GADIVMHSATKFIAGHSDVMAGVLAVKGER-------  140 (307)
Q Consensus        72 ~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~---~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~-------  140 (307)
                      ++ .+.|+++|.++|+++|+++++|++|+.|... .....   ++|++++|+||++.|+.   +|+++++++.       
T Consensus       204 ~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~Gpr---gG~i~~~~~~~~~~~~~  279 (483)
T 1rv3_A          204 YS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCR---AGMIFYRRGVRSVDPKT  279 (483)
T ss_dssp             CC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCS---CEEEEEECSBCC-----
T ss_pred             CC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCCCC---ceEEEEcchhhhhcccc
Confidence            88 8899999999999999999999999855432 22222   68999999999997765   6999998752       


Q ss_pred             -------HHHHHHHHH-HhcCCCCChhhHHHHhhcc-----ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCC
Q 021783          141 -------LAKELYFLQ-NAEGSGLAPFDCWICLRGV-----KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP  207 (307)
Q Consensus       141 -------~~~~~~~~~-~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~  207 (307)
                             +.+.+.... ....++...........++     ..+....++..++++.+.+.|++. ++ .+..+      
T Consensus       280 g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~------  351 (483)
T 1rv3_A          280 GKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GY-KIVTG------  351 (483)
T ss_dssp             --CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TC-EEGGG------
T ss_pred             CcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc-CC-EeccC------
Confidence                   222222211 1111122211111111111     234556677778888888888765 22 11111      


Q ss_pred             chHHHhhhccCCCceEEEEeCCH-HHHHHHHhcCCcceeecC----CCCccceeecccccCCCCCcHHHHHhcCCCCCeE
Q 021783          208 GHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSITVS----FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLV  282 (307)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~----~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i  282 (307)
                               .....++++.+... .+...+.+.|...||.++    +|..+.                      ..++++
T Consensus       352 ---------~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~----------------------~~~~~i  400 (483)
T 1rv3_A          352 ---------GSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSA----------------------LRPSGL  400 (483)
T ss_dssp             ---------SCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCT----------------------TSCCEE
T ss_pred             ---------CCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcC----------------------CCCceE
Confidence                     00123455555321 124556666667788887    544200                      125679


Q ss_pred             EEEecc--------CChHHHHHHHHHHHh
Q 021783          283 RISVGI--------EDVNDLISDLDKALR  303 (307)
Q Consensus       283 Ris~~~--------~~~~~~i~~l~~~l~  303 (307)
                      |||++.        ++++++++.|.++++
T Consensus       401 Ris~~~~~t~g~~~edi~~~~~~l~~~l~  429 (483)
T 1rv3_A          401 RLGTPALTSRGLLEKDFQKVAHFIHRGIE  429 (483)
T ss_dssp             EEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             EeecCCcccCCCCHHHHHHHHHHHHHHHH
Confidence            999973        577777777777664

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.89  E-value=2.5e-22  Score=174.71  Aligned_cols=238  Identities=15%  Similarity=0.137  Sum_probs=154.3

Q ss_pred             CCC-CeEEEcCCCCcchHHHHhhhccc----CCcE-----EEEecCCChHHHHhhcCCCceEEEEeCCCCCcccccc---
Q 021783           12 GTG-EEIVAGDDLYGGTDRLLSRVTPK----TGVV-----VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD---   78 (307)
Q Consensus        12 ~~g-d~Vlv~~~~~~~~~~~~~~~~~~----~g~~-----~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~---   78 (307)
                      +|| |+|++++|+|+.+...+......    .|..     +..++..|++++++.+++++++|++++++||||.+.+   
T Consensus       114 ~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~  193 (375)
T 2eh6_A          114 GKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYKLLDEETAGIIIEVIQGEGGVNEASED  193 (375)
T ss_dssp             TCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTTCHHHHHTTCCTTEEEEEECSEETTTTSEECCHH
T ss_pred             CCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCchHHHHHHHhcCCeEEEEEeCccCCCCCcCCCHH
Confidence            788 99999999988776443222111    1222     6677778999999999989999999999999999988   


Q ss_pred             -HHHHHHHHHHcCCEEEEeCccC-CCCcC---CccCCC--ccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHh
Q 021783           79 -IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLELG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  151 (307)
Q Consensus        79 -~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~~~~--~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~  151 (307)
                       +++|.++|++||+++|+|++|+ .+...   ....++  .|++  |+||+++  +|.+.|+++++++ +.+.+......
T Consensus       194 ~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~--s~SK~~~--~g~~~G~~~~~~~-~~~~~~~~~~~  268 (375)
T 2eh6_A          194 FLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI--ALAKGLG--GGVPIGAILAREE-VAQSFTPGSHG  268 (375)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGG--TTSCCEEEEEEHH-HHTTCCTTSCC
T ss_pred             HHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEE--EEccccc--CCCCeEEEEEcHH-HHhhhcCCCCC
Confidence             9999999999999999999998 43322   123345  6766  6779995  3677999999854 33322221111


Q ss_pred             cCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHH
Q 021783          152 EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA  231 (307)
Q Consensus       152 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (307)
                      .....+...+..+...++......++..++.+.+.+.+++.+.         .          ..++.+.++++.++.  
T Consensus       269 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~---------~----------~~~~~g~~~~~~~~~--  327 (375)
T 2eh6_A          269 STFGGNPLACRAGTVVVDEVEKLLPHVREVGNYFKEKLKELGK---------G----------KVKGRGLMLGLELER--  327 (375)
T ss_dssp             CSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---------S----------EEEEETTEEEEECSS--
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------C----------CceEEEEEEEEEEcC--
Confidence            1223344555555555554443445556666666666665421         0          001246788888753  


Q ss_pred             HHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHH
Q 021783          232 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  302 (307)
Q Consensus       232 ~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l  302 (307)
                      ....+.+.|.++||.++.+.                           ++++|++++....++.++.+.+.|
T Consensus       328 ~~~~~~~~l~~~gi~~~~~~---------------------------~~~iRi~~~~~~~~~~i~~~~~~l  371 (375)
T 2eh6_A          328 ECKDYVLKALEKGLLINCTA---------------------------GKVLRFLPPLIIQKEHIDRAISVL  371 (375)
T ss_dssp             CCHHHHHHHHHTTEECEEET---------------------------TTEEEECCCTTCCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHCCCEEecCC---------------------------CCEEEEECCCCCCHHHHHHHHHHH
Confidence            14456666666788765421                           456999987544444444444444

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.89  E-value=3.9e-22  Score=175.80  Aligned_cols=243  Identities=13%  Similarity=0.093  Sum_probs=156.2

Q ss_pred             HHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-C------ChHHHHhhcCC---CceEEEEeCCCCCccccc
Q 021783            8 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-C------DLDEVASAIGP---WTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         8 ~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~------d~~~l~~~l~~---~~~~v~~~~~~n~tG~~~   77 (307)
                      ...+++||+|++++|+|+++.    ..++..|++++.++. +      |++++++.+++   .++++++++|+||||.++
T Consensus       118 ~~~~~~gd~Vl~~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~  193 (412)
T 1yaa_A          118 FSKFFPDKLVYLSKPTWANHM----AIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDP  193 (412)
T ss_dssp             HHHHCTTCCEEEEESCCTTHH----HHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCC
T ss_pred             HHHhCCCCEEEEeCCCCccHH----HHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC
Confidence            345679999999999999887    556678999998887 2      78999988863   245555699999999998


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCccCCCCcC----------CccC-CC---ccEEEeccccccccCCCceeEEEE--E--
Q 021783           78 D---IRKIAEMAHAHGALLLVDNSIMSPVLS----------RPLE-LG---ADIVMHSATKFIAGHSDVMAGVLA--V--  136 (307)
Q Consensus        78 ~---~~~l~~~~~~~~~~li~D~a~~~~~~~----------~~~~-~~---~d~~~~s~~K~~~g~~g~~~G~~~--~--  136 (307)
                      +   +++|.++|++||+++|+|++|+.....          .... ..   .+++++|+||.+ |++|+|+|+++  +  
T Consensus       194 ~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~GlriG~~~~~~~~  272 (412)
T 1yaa_A          194 TSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNA-GMYGERVGCFHLALTK  272 (412)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTS-CCGGGCEEEEEEECCS
T ss_pred             CHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCC-CCcCCcceEEEEEecC
Confidence            5   678999999999999999999643211          1111 22   579999999999 67899999998  6  


Q ss_pred             --cChh----HHHHHHHHHHhcCCCCChhhHHHHhhccccH----------HHHHHHHHHHHHHHHHHHhcCCCccEEec
Q 021783          137 --KGER----LAKELYFLQNAEGSGLAPFDCWICLRGVKTM----------ALRVEKQQDNAQKIAEFLASHPRVKKVNY  200 (307)
Q Consensus       137 --~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  200 (307)
                        +++.    +.+.+...........+...+..+...++..          +...+.+.++.+.+.+.|++..       
T Consensus       273 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-------  345 (412)
T 1yaa_A          273 QAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLG-------  345 (412)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred             CCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-------
Confidence              2343    4444443333333333445555554444332          2223344445555555555321       


Q ss_pred             CCCCCCCchHHHhhhccCCCceEEE-EeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCC
Q 021783          201 AGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTE  279 (307)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  279 (307)
                      +.    .++++..  +  .++++.| .++    ...+...+.++||.++.                              
T Consensus       346 ~~----~~~~~~~--~--~~~~~~~~~~~----~~~~~~~l~~~gi~v~~------------------------------  383 (412)
T 1yaa_A          346 TP----GNWDHIV--N--QCGMFSFTGLT----PQMVKRLEETHAVYLVA------------------------------  383 (412)
T ss_dssp             CS----SCCTHHH--H--CCSSEEECCCC----HHHHHHHHHHHCEECCT------------------------------
T ss_pred             CC----CCeeeec--c--CceEEEeeCCC----HHHHHHHHHhCCEEecc------------------------------
Confidence            00    0122221  1  2334433 332    23344444567887653                              


Q ss_pred             CeEEEEecc---CChHHHHHHHHHHHhcC
Q 021783          280 DLVRISVGI---EDVNDLISDLDKALRTG  305 (307)
Q Consensus       280 ~~iRis~~~---~~~~~~i~~l~~~l~~~  305 (307)
                       ++|||++.   ++++++++.|.++++.+
T Consensus       384 -~~Ris~~~~~~~~i~~~~~~l~~~~~~~  411 (412)
T 1yaa_A          384 -SGRASIAGLNQGNVEYVAKAIDEVVRFY  411 (412)
T ss_dssp             -TSEEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred             -CcEEEEccCCHhHHHHHHHHHHHHHHhh
Confidence             18999973   78899999999888653

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.89  E-value=2.3e-22  Score=178.70  Aligned_cols=243  Identities=11%  Similarity=0.011  Sum_probs=153.3

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC--C---------ChHHHHhhcCCCceEEEEeCCCCCc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--C---------DLDEVASAIGPWTKLVWVESPTNPR   73 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~---------d~~~l~~~l~~~~~~v~~~~~~n~t   73 (307)
                      .++.+++++||+|+++.++|.++..    .+...|+++++++.  +         |++++   +.++++++++++ .|++
T Consensus        87 ~~~~a~~~~gd~Vlv~~~~h~s~~~----~~~~~G~~~~~v~~~~~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~  158 (446)
T 2x3l_A           87 SVIQSFSQKKGDILMARNVHKSVLH----ALDISQQEGHFIETHQSPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYY  158 (446)
T ss_dssp             HHHHTTTTSSSCEEECTTCCHHHHH----HHHHHTCCEEECEEEECTTTSSEEEEEC----------CCEEEEES-SCTT
T ss_pred             HHHHHhcCCCCEEEEecCccHHHHH----HHHHcCCeEEEEeCeeccccCcCCCCCHHHH---cCCCceEEEEEC-CCCC
Confidence            5666678999999999999998884    44557888888876  3         34555   457889999999 5569


Q ss_pred             cccccHHHHHHHHHHcCCEEEEeCccCCCC-----cCCccCCCccEEEeccccccccCCCceeEEEEEcChhHH-HHHHH
Q 021783           74 QQICDIRKIAEMAHAHGALLLVDNSIMSPV-----LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA-KELYF  147 (307)
Q Consensus        74 G~~~~~~~l~~~~~~~~~~li~D~a~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~-~~~~~  147 (307)
                      |.+.|+++|.++|++||+++|+|++|+...     ..+....+.|++++|+||+++++.|  +|+++++++.+. ..+..
T Consensus       159 G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g~Di~~~S~~K~l~~~~g--~g~l~~~~~~i~~~~~~~  236 (446)
T 2x3l_A          159 GETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPALTM--GSVLYIHKNAPYRENIIE  236 (446)
T ss_dssp             SCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGTCSEEEECHHHHSSSCTT--CEEEEEETTCTTHHHHHH
T ss_pred             eEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcCCCEEEECCccccccccc--cEEEEEcCCcCCHHHHHH
Confidence            999999999999999999999999998621     1133455789999999998877777  899999876543 22222


Q ss_pred             H-HHhcCCCCChhhHHHHhhccccHHHH-HHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEE
Q 021783          148 L-QNAEGSGLAPFDCWICLRGVKTMALR-VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  225 (307)
Q Consensus       148 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  225 (307)
                      . .....++.+.........+++.+... .+++.+....+.+++++. ++ .+..+               . .+..+++
T Consensus       237 ~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~-g~-~~~~~---------------~-~~~~l~i  298 (446)
T 2x3l_A          237 YLSYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK-GF-EMLQV---------------D-DPLKLLI  298 (446)
T ss_dssp             HHHHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-TC-EEEEC---------------S-STTEEEE
T ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-CC-EECcC---------------C-CCeEEEE
Confidence            2 22222233322222222222222211 111344445555555443 21 11110               1 1234667


Q ss_pred             EeCCHHHHHHHHhcCCcceeecC-CCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHH
Q 021783          226 LTGSLALSKHVVETTKYFSITVS-FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDK  300 (307)
Q Consensus       226 ~~~~~~~~~~~~~~l~~~gi~v~-~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~  300 (307)
                      .+++.+ ...+.+.|..+||.++ .|                            .+++|++++.    +++ ++++.|.+
T Consensus       299 ~~~~~~-~~~l~~~L~~~GI~v~~~g----------------------------~~~iRi~~~~~~t~e~i-~l~~aL~~  348 (446)
T 2x3l_A          299 KYEGFT-GHDIQNWFMNAHIYLELAD----------------------------DYQALAILPLWHHDDTY-LFDSLLRK  348 (446)
T ss_dssp             ECTTSC-HHHHHHHHHHTTEEESEEC----------------------------SSCEEEECCCCCTTCCC-CHHHHHHH
T ss_pred             EeCCcC-HHHHHHHHHHCCCEEEecC----------------------------CCEEEEEeecCCCHHHH-HHHHHHHH
Confidence            665333 5667777777788776 22                            2349999974    678 88999988


Q ss_pred             HHhcC
Q 021783          301 ALRTG  305 (307)
Q Consensus       301 ~l~~~  305 (307)
                      .++..
T Consensus       349 ~~~~~  353 (446)
T 2x3l_A          349 IEDMI  353 (446)
T ss_dssp             HHTCC
T ss_pred             HHHhh
Confidence            87654

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.89  E-value=1.4e-23  Score=181.84  Aligned_cols=247  Identities=13%  Similarity=0.051  Sum_probs=155.3

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC---------ChHHHHhhcCCCceEEEEeCCCCC
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---------DLDEVASAIGPWTKLVWVESPTNP   72 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---------d~~~l~~~l~~~~~~v~~~~~~n~   72 (307)
                      |+ .++.++++|||+|+++++.+.+..  +...++..| +++.++.+         |.+++  .++++|++|++++++||
T Consensus        80 a~~~~~~~l~~~gd~vl~~~~~~~~~~--~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~--~i~~~t~~v~~~~~~n~  154 (362)
T 2c0r_A           80 QFAMIPMNFLKEGQTANYVMTGSWASK--ALKEAKLIG-DTHVAASSEASNYMTLPKLQEI--QLQDNAAYLHLTSNETI  154 (362)
T ss_dssp             HHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHHS-CEEEEEECGGGTTCSCCCGGGC--CCCTTEEEEEEESEETT
T ss_pred             HHHHHHHhcCCCCCeEEEEecCcHhHH--HHHHHHHhC-CeEEEecccccccccCCCHHHc--ccCCCcCEEEEeCCcCc
Confidence            44 455667899999998877654432  224455668 77777642         33333  26788999999999999


Q ss_pred             cccc-ccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH----
Q 021783           73 RQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY----  146 (307)
Q Consensus        73 tG~~-~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~----  146 (307)
                      ||.. .|+++|      +|+++++|++|+.+..+ +..+  .|++++|+||++ |++|  +|+++++++.+.....    
T Consensus       155 tG~~~~~l~~i------~~~~vivD~a~~~~~~~~~~~~--~d~~~~s~~K~~-g~~G--~G~l~~~~~~~~~l~~~~~~  223 (362)
T 2c0r_A          155 EGAQFKAFPDT------GSVPLIGDMSSDILSRPFDLNQ--FGLVYAGAQKNL-GPSG--VTVVIVREDLVAESPKHLPT  223 (362)
T ss_dssp             TTEECSSCCCC------TTSCEEEECTTTTTSSCCCGGG--CSEEEEETTTTT-CCSS--CEEEEEEGGGSSSCCTTSCG
T ss_pred             cceeccccccc------CCCEEEEEChhhccCCccchhH--CcEEEEeccccc-cCcC--cEEEEEcHHHHhhccccCch
Confidence            9996 567766      89999999999988765 3333  489999999999 6888  8999998664322110    


Q ss_pred             -----HH-HH-hcCCCCChhhHHHHhhcccc------HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHh
Q 021783          147 -----FL-QN-AEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  213 (307)
Q Consensus       147 -----~~-~~-~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~  213 (307)
                           .. .. ....+.+...++.+..+++.      ++...+...++++.+.+.|++.+.+.....             
T Consensus       224 ~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-------------  290 (362)
T 2c0r_A          224 MLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCV-------------  290 (362)
T ss_dssp             GGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESS-------------
T ss_pred             HHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCC-------------
Confidence                 00 01 11223444444444444432      344455556666667777765431101100             


Q ss_pred             hhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----C
Q 021783          214 SQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----E  289 (307)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~  289 (307)
                      ++....+++++|.+++.....++.+.|...||.+..|..+                         .+++|+|++.    +
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~g~~~-------------------------~~~iRis~~~~~~~e  345 (362)
T 2c0r_A          291 DVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRS-------------------------VGGLRASIYNAVPYE  345 (362)
T ss_dssp             CGGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTT-------------------------TCSEEEECCTTSCHH
T ss_pred             ChHHcCCcEEEEEcCCcchHHHHHHHHHHCCCeeccCCCC-------------------------CCEEEEECCCCCCHH
Confidence            0001124677888875445778888888889977665431                         2359999985    4


Q ss_pred             ChHHHHHHHHHHHh
Q 021783          290 DVNDLISDLDKALR  303 (307)
Q Consensus       290 ~~~~~i~~l~~~l~  303 (307)
                      +++++++.|++.++
T Consensus       346 ~i~~l~~~l~~~~~  359 (362)
T 2c0r_A          346 SCEALVQFMEHFKR  359 (362)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555555443

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.89  E-value=6e-22  Score=174.52  Aligned_cols=243  Identities=12%  Similarity=0.045  Sum_probs=158.7

Q ss_pred             HhcCCC-----CeEEEcCCCCcchHHHHhhhcccCCcE-EEEecC---C----ChHHHHhhcC---CCceEEEEeCCCCC
Q 021783            9 HLLGTG-----EEIVAGDDLYGGTDRLLSRVTPKTGVV-VKRVNT---C----DLDEVASAIG---PWTKLVWVESPTNP   72 (307)
Q Consensus         9 ~~~~~g-----d~Vlv~~~~~~~~~~~~~~~~~~~g~~-~~~v~~---~----d~~~l~~~l~---~~~~~v~~~~~~n~   72 (307)
                      +++++|     |+|++++|+|+++.    ..++..|++ ++.++.   +    |++++++.+.   ++++++++++|+||
T Consensus       120 ~~~~~g~~~~~d~Vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~np  195 (412)
T 1ajs_A          120 ARWYNGTNNKDTPVYVSSPTWENHN----GVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNP  195 (412)
T ss_dssp             HHHSSSSSCCCSCEEEEESCCTHHH----HHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTT
T ss_pred             HHhCcCcCCCCCeEEEcCCCcHHHH----HHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCC
Confidence            456899     99999999999877    556678898 888887   3    7899998886   36788889999999


Q ss_pred             cccccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-------Ccc----CCCccEEEeccccccccCCCceeEEEEE--
Q 021783           73 RQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-------RPL----ELGADIVMHSATKFIAGHSDVMAGVLAV--  136 (307)
Q Consensus        73 tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-------~~~----~~~~d~~~~s~~K~~~g~~g~~~G~~~~--  136 (307)
                      ||.+++   +++|.++|++||+++|+|++|......       ...    ..+.+++++|+||.+ |++|+|+|++++  
T Consensus       196 tG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~riG~~~~~~  274 (412)
T 1ajs_A          196 TGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNF-GLYNERVGNLTVVA  274 (412)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTS-CCGGGCEEEEEEEC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEeccccc-CCCCcceEEEEEec
Confidence            999975   678999999999999999998643221       111    124569999999999 678999999999  


Q ss_pred             -cChh---HHHHHHHHHHhcCCCCChhhHHHHhhccccH----------HHHHHHHHHHHHHHHHHHhcCCCccEEecCC
Q 021783          137 -KGER---LAKELYFLQNAEGSGLAPFDCWICLRGVKTM----------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAG  202 (307)
Q Consensus       137 -~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  202 (307)
                       +++.   +.+.+...........+...+..+...++..          +...+.+.++.+.+.+.|++...      + 
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~------~-  347 (412)
T 1ajs_A          275 KEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKT------P-  347 (412)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------S-
T ss_pred             CCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC------C-
Confidence             5432   2222222222222333445555555555432          22334444555555555554310      0 


Q ss_pred             CCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeE
Q 021783          203 LPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLV  282 (307)
Q Consensus       203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i  282 (307)
                          .++.+..  + ..+.+++..++    ...+...+.++||.++.                               .+
T Consensus       348 ----~~~~~~~--~-~~~~~~~~~~~----~~~~~~~l~~~gv~v~~-------------------------------~~  385 (412)
T 1ajs_A          348 ----GTWNHIT--D-QIGMFSFTGLN----PKQVEYLINQKHIYLLP-------------------------------SG  385 (412)
T ss_dssp             ----SCCHHHH--H-CCSSEEECCCC----HHHHHHHHHTTCEECCT-------------------------------TS
T ss_pred             ----CCeeEEc--C-CCceEEEeCCC----HHHHHHHHHhCCEEecC-------------------------------Cc
Confidence                0122221  1 12333333333    33444445567887653                               16


Q ss_pred             EEEecc---CChHHHHHHHHHHHhcC
Q 021783          283 RISVGI---EDVNDLISDLDKALRTG  305 (307)
Q Consensus       283 Ris~~~---~~~~~~i~~l~~~l~~~  305 (307)
                      |+|++.   +++++.++.|.++++++
T Consensus       386 Ris~~~~~~~~i~~~~~~l~~~l~~~  411 (412)
T 1ajs_A          386 RINMCGLTTKNLDYVATSIHEAVTKI  411 (412)
T ss_dssp             EEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred             EEEeeeCCHHHHHHHHHHHHHHHHhc
Confidence            888873   89999999999998764

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.88  E-value=1.4e-22  Score=180.70  Aligned_cols=172  Identities=15%  Similarity=0.148  Sum_probs=122.0

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC--------CChHHHHhhc-C----CCceEEEEeCCCCCccccccH
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAI-G----PWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~--------~d~~~l~~~l-~----~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      +|++|++++++|+++.    ..++..|++++.++.        .|++++++++ +    .++.+|++++++||||.+.|+
T Consensus       175 ~~~~vi~~~~~h~s~~----~~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l  250 (456)
T 2z67_A          175 GSNVVIYPYASHKSPI----KAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDI  250 (456)
T ss_dssp             CCCEEEEECCCCHHHH----HHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCH
T ss_pred             CCCEEEEECCCcHHHH----HHHHHcCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCH
Confidence            6788999999998877    556678999998875        2899999998 4    477788889999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCc---C-CccCC--CccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcC
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVL---S-RPLEL--GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  153 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~---~-~~~~~--~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~  153 (307)
                      ++|.++|+++|+++++|+||+....   + ....+  ++|++++|+||++++|.|  +|+++++++.+.+.+.  ....+
T Consensus       251 ~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g--~G~l~~~~~~~~~~l~--~~~~g  326 (456)
T 2z67_A          251 VEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIG--GGLVYSTDAEFIKEIS--LSYPG  326 (456)
T ss_dssp             HHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCCSS--CEEEEESCHHHHHHHH--TTSCS
T ss_pred             HHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCCCCC--eEEEEEcCHHHHhhcC--cCCCC
Confidence            9999999999999999999875433   2 11112  799999999999877776  9999997655544331  11222


Q ss_pred             CCCC--hhhHHHHhhcc--ccHHHHHHHHHHHHHHHHHHHhcC
Q 021783          154 SGLA--PFDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       154 ~~~~--~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~  192 (307)
                      ....  ....+.....+  +.+....++..++++.+.+.|++.
T Consensus       327 ~~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  369 (456)
T 2z67_A          327 RASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDL  369 (456)
T ss_dssp             CBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            2111  22233322222  233444556666667777776654

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.88  E-value=6.3e-22  Score=173.43  Aligned_cols=238  Identities=12%  Similarity=0.054  Sum_probs=153.9

Q ss_pred             cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC---C----ChHHHHhhcCC---CceEEEEeCCCCCcccccc--
Q 021783           11 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---C----DLDEVASAIGP---WTKLVWVESPTNPRQQICD--   78 (307)
Q Consensus        11 ~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~---~----d~~~l~~~l~~---~~~~v~~~~~~n~tG~~~~--   78 (307)
                      +.+||+|++++|+|+++.    ..++..|++++.++.   +    |++++++.+++   +++++++++|+||||.+++  
T Consensus       117 ~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~  192 (396)
T 2q7w_A          117 NTSVKRVWVSNPSWPNHK----SVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLE  192 (396)
T ss_dssp             HSCCCEEEEEESCCTHHH----HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHH
T ss_pred             hCCCCEEEEcCCCchhHH----HHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHH
Confidence            469999999999999887    556778999999987   3    79999999873   4788888999999999985  


Q ss_pred             -HHHHHHHHHHcCCEEEEeCccCCCCcC------C---ccC-CCccEEEeccccccccCCCceeEEEEE--cChh----H
Q 021783           79 -IRKIAEMAHAHGALLLVDNSIMSPVLS------R---PLE-LGADIVMHSATKFIAGHSDVMAGVLAV--KGER----L  141 (307)
Q Consensus        79 -~~~l~~~~~~~~~~li~D~a~~~~~~~------~---~~~-~~~d~~~~s~~K~~~g~~g~~~G~~~~--~~~~----~  141 (307)
                       +++|.++|++||+++|+|++|+.....      .   ... .+.+++++|+||.+ |++|+|+|++++  +++.    +
T Consensus       193 ~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~~~~  271 (396)
T 2q7w_A          193 QWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNF-GLYNERVGACTLVAADSETVDRA  271 (396)
T ss_dssp             HHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTT-TCGGGCCEEEEEECSSHHHHHHH
T ss_pred             HHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccc-cccccccceEEEEcCCHHHHHHH
Confidence             678999999999999999999753321      1   111 24679999999999 678999999997  3332    3


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHhhccccH----------HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHH
Q 021783          142 AKELYFLQNAEGSGLAPFDCWICLRGVKTM----------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL  211 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~  211 (307)
                      .+.+...........+...+..+...++..          +...+.+.++.+.+.+.+++...      +     .++++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~------~-----~~~~~  340 (396)
T 2q7w_A          272 FSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGA------N-----RDFSF  340 (396)
T ss_dssp             HHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTC------C-----SCCTH
T ss_pred             HHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------C-----CCcce
Confidence            222322222222233555555555555432          22233334455555555654320      0     01222


Q ss_pred             HhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc---
Q 021783          212 HYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---  288 (307)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---  288 (307)
                      ..  + ..+.++++.++    ...+...+..+||.++.|                               +|||++.   
T Consensus       341 ~~--~-~~~~~~~~~~~----~~~~~~~l~~~gv~v~~~-------------------------------~Ris~~~~~~  382 (396)
T 2q7w_A          341 II--K-QNGMFSFSGLT----KEQVLRLREEFGVYAVAS-------------------------------GRVNVAGMTP  382 (396)
T ss_dssp             HH--H-CCSSEEECCCC----HHHHHHHHHHHCEECCTT-------------------------------CEEEGGGCCT
T ss_pred             ec--C-CCceEEEecCC----HHHHHHHHHhcCeeecCC-------------------------------ceEEEeecCH
Confidence            21  1 12333344333    234455566678877531                               7888873   


Q ss_pred             CChHHHHHHHHHHH
Q 021783          289 EDVNDLISDLDKAL  302 (307)
Q Consensus       289 ~~~~~~i~~l~~~l  302 (307)
                      +++++.++.|.+++
T Consensus       383 e~i~~~~~~l~~~l  396 (396)
T 2q7w_A          383 DNMAPLCEAIVAVL  396 (396)
T ss_dssp             TTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcC
Confidence            67888888777653

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.88  E-value=1.4e-22  Score=177.72  Aligned_cols=250  Identities=13%  Similarity=0.074  Sum_probs=162.2

Q ss_pred             CCCCeEEEcCCCCcchHHHHh---------hhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCcccccc----
Q 021783           12 GTGEEIVAGDDLYGGTDRLLS---------RVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD----   78 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~~~~~~~---------~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~----   78 (307)
                      .++|+|++.++.|.+......         ......+.++..++.+|++++++.+++++++|++++++|++|...+    
T Consensus       122 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~~G~~~~~~~~  201 (395)
T 3nx3_A          122 VKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDF  201 (395)
T ss_dssp             CTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTCHHHHHTTCCTTEEEEEEESEECTTSCEECCHHH
T ss_pred             CCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCCHHHHHHhccCCeEEEEEeCccCCCCcccCCHHH
Confidence            468999999999976642211         2223445678888889999999999989999999999999999876    


Q ss_pred             HHHHHHHHHHcCCEEEEeCccC-CCCcC---CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCC
Q 021783           79 IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS  154 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~  154 (307)
                      +++|.++|++||+++|+|++|+ .+...   ....++....+.|+||.+++  |+++|+++++++.+.+.+.........
T Consensus       202 l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~--G~~~G~~~~~~~~~~~~~~~~~~~~~~  279 (395)
T 3nx3_A          202 YKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGC--GLSVGAFVINQKVASNSLEAGDHGSTY  279 (395)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGTT--TSCCEEEEECHHHHHHHSCTTCCSSCB
T ss_pred             HHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEEecccccC--CCceEEEEEchhhhhhhcCCcccCCCC
Confidence            9999999999999999999997 32221   22233443334578899953  788999999865414433222112223


Q ss_pred             CCChhhHHHHhhccccHH--HHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHH
Q 021783          155 GLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLAL  232 (307)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (307)
                      ..++..+..+.++++.+.  ...++..++.+.+.+.+++..          ..+|.+    ...++.+.++++.+.+.+.
T Consensus       280 ~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~----~~~~~~g~~~~~~~~~~~~  345 (395)
T 3nx3_A          280 GGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELI----------NEFDFC----KKRKGLGFMQGLSLDKSVK  345 (395)
T ss_dssp             SCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH----------HHCTTE----EEEEEETTEEEEEECTTSC
T ss_pred             CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----------HhCCCe----EEEEeEEEEEEEEeCCcch
Confidence            345555666555554331  123333444444444444210          000000    0112346788888865444


Q ss_pred             HHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          233 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       233 ~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                      ...+.+.+..+||.++.++                           ++++|++++.    +++++.++.|.+++++
T Consensus       346 ~~~~~~~l~~~Gi~v~~~~---------------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  394 (395)
T 3nx3_A          346 VAKVIQKCQENALLLISCG---------------------------ENDLRFLPPLILQKEHIDEMSEKLRKALKS  394 (395)
T ss_dssp             HHHHHHHHHHTTEECEEET---------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCEEecCC---------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            7788888888899776532                           4569998765    6777777777777754

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.88  E-value=2.9e-22  Score=180.86  Aligned_cols=177  Identities=13%  Similarity=0.087  Sum_probs=131.5

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhcccCCc---EEEEecCC-----ChHHHHhhcCCC------ceEEEEeCCCCCcccccc
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTPKTGV---VVKRVNTC-----DLDEVASAIGPW------TKLVWVESPTNPRQQICD   78 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~-----d~~~l~~~l~~~------~~~v~~~~~~n~tG~~~~   78 (307)
                      ++++|+++++.|+++.    ..++..|+   +++.++.+     |+++|+++++++      +++|++++++|++|.+.|
T Consensus       191 ~~~~v~~s~~~H~s~~----~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~  266 (511)
T 3vp6_A          191 PKLVLFTSEQSHYSIK----KAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP  266 (511)
T ss_dssp             CCEEEEEETTSCTHHH----HHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC
T ss_pred             CCeEEEECCCchHHHH----HHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc
Confidence            5789999999998887    55666777   88888875     899999999743      889999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcCCc-------cCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH-HH
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLSRP-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-QN  150 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~~~-------~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~-~~  150 (307)
                      +++|+++|++||+++++|++|+.+.....       ...++|++++++|||+++|.|  +|+++++++......... ..
T Consensus       267 l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~  344 (511)
T 3vp6_A          267 IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQ--CSAILVKEKGILQGCNQMHAS  344 (511)
T ss_dssp             HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSC--CEEEEESSTTHHHHHHCCCCT
T ss_pred             HHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcC--eEEEEEeCHHHHHHHhccCCc
Confidence            99999999999999999999987765321       113579999999999988877  899999877543332110 00


Q ss_pred             hc--------------------CCCCChhhHHHHhh--ccccHHHHHHHHHHHHHHHHHHHhcCCCc
Q 021783          151 AE--------------------GSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRV  195 (307)
Q Consensus       151 ~~--------------------~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~l~~~~~~  195 (307)
                      +.                    +........|..+.  +.+.+..+.++..++++.+.+.+++.+++
T Consensus       345 yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~  411 (511)
T 3vp6_A          345 YLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEF  411 (511)
T ss_dssp             TTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTE
T ss_pred             cccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence            00                    00112233444333  33456677788888999999999876543

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.88  E-value=4.1e-22  Score=172.36  Aligned_cols=241  Identities=15%  Similarity=0.064  Sum_probs=154.2

Q ss_pred             HHHHHhcCCCCe--EEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcCCCceEEEEeCCCCCc-cccc
Q 021783            5 AAVTHLLGTGEE--IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPWTKLVWVESPTNPR-QQIC   77 (307)
Q Consensus         5 ~~~~~~~~~gd~--Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~~~~~~v~~~~~~n~t-G~~~   77 (307)
                      .++.+++++||+  |+++.+.|..... ....+...|++++.++.+    |+++++++ .+++++|++++|+||+ |.++
T Consensus        78 ~a~~~~~~~g~~~vvi~~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~  155 (359)
T 3pj0_A           78 IALRIWADRKENRRVAYHPLSHLEIHE-QDGLKELQQITPLLLGTANQLLTIDDIKSL-REPVSSVLIELPQREIGGQLP  155 (359)
T ss_dssp             HHHHHHHHHHTCCEEEECTTCHHHHSS-TTHHHHHHCCEEEECSCTTSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCC
T ss_pred             HHHHHHHhcCCCcEEEEeccceeeehh-cchHHHhcCceEEecCCcCCCcCHHHHHhc-cCCceEEEEEecccCCCcccC
Confidence            455566778887  6666665543321 001123468999998874    88999988 7889999999999998 6888


Q ss_pred             cH---HHHHHHHHHcCCEEEEeCccCCCCc------CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH
Q 021783           78 DI---RKIAEMAHAHGALLLVDNSIMSPVL------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  148 (307)
Q Consensus        78 ~~---~~l~~~~~~~~~~li~D~a~~~~~~------~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~  148 (307)
                      +.   ++|.++|++||+++|+|++|..+..      ......+.|+++.|+||+++++.   +|+++.+ +.+.+.+...
T Consensus       156 ~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~---gg~~~~~-~~l~~~~~~~  231 (359)
T 3pj0_A          156 AFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIA---GAILAGN-DDFVQEAKIW  231 (359)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSS---CEEEEEC-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcc---eEEEECC-HHHHHHHHHH
Confidence            74   4559999999999999999864331      11112367899999999996653   4777776 4455555544


Q ss_pred             HHhcCCC--CChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEE
Q 021783          149 QNAEGSG--LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  226 (307)
Q Consensus       149 ~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  226 (307)
                      ....+..  .....+.....+++....+.++..++.+.+.+.|++.+++.....                ...++++++.
T Consensus       232 ~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~----------------~~~~~~~~~~  295 (359)
T 3pj0_A          232 KRRYGGDLISLYPYILSADYYFEKRIGKMAEYFEAAKGLAERFNSCSGVKTVPE----------------VPVSNMFHVY  295 (359)
T ss_dssp             HHHTTCCCSCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHTSTTEEEESS----------------SCSSSEEEEE
T ss_pred             HHHhCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCceeecc----------------CCcceEEEEE
Confidence            3333221  122222222233433334455667777788888877654311101                1135667777


Q ss_pred             eCC--HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc
Q 021783          227 TGS--LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  288 (307)
Q Consensus       227 ~~~--~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~  288 (307)
                      ++.  ......+.+.+.++||.+++|..+..   |                  +.+++|++++.
T Consensus       296 ~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~---~------------------~~~~~r~~i~~  338 (359)
T 3pj0_A          296 FENSADEIGAILTKIQDETGVGISGYLQEKS---A------------------DVCAFEVSVGD  338 (359)
T ss_dssp             ESSCHHHHHHHHHHHHHHHCEECCSCCEEEE---T------------------TEEEEEEECCT
T ss_pred             ecCccchhHHHHHHHHHhcCcEecCCccccC---C------------------CceEEEEEecC
Confidence            753  23467888889889999999865321   1                  24679999974

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.88  E-value=7.1e-21  Score=168.34  Aligned_cols=223  Identities=17%  Similarity=0.154  Sum_probs=145.5

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCcccc
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQI   76 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG~~   76 (307)
                      |+.+++..+.+||+|++++|+|+++.    ..++..|++++.++.+      |++++++.+++++++|++++   |+|..
T Consensus        79 al~~~l~~l~~gd~Vlv~~~~~~~~~----~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~tG~~  151 (424)
T 2po3_A           79 GLQLLAHAAGLTGEVIMPSMTFAATP----HALRWIGLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVVGVH---LWGRP  151 (424)
T ss_dssp             HHHHHHHHHTCCSEEEEESSSCTHHH----HHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCTTEEEEEEEC---GGGCC
T ss_pred             HHHHHHHHcCCCCEEEECCCccHHHH----HHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCcCCcEEEEEC---CCCCc
Confidence            44333333358999999999999888    4566789999999874      78999999988899999854   89999


Q ss_pred             ccHHHHHHHHHHcCCEEEEeCccCCCCcCCccCC--CccEEEeccc--cccccCCCceeEEEEEcChhHHHHHHHHHHhc
Q 021783           77 CDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLEL--GADIVMHSAT--KFIAGHSDVMAGVLAVKGERLAKELYFLQNAE  152 (307)
Q Consensus        77 ~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~d~~~~s~~--K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~  152 (307)
                      .++++|.++|+++|+++|+|++|+.+...+....  ..|++++|||  |++++   .++|+++.+++.+.+.+.......
T Consensus       152 ~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~sk~K~l~~---~~~G~~v~~~~~l~~~l~~~~~~~  228 (424)
T 2po3_A          152 CAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSFHATKAVNA---FEGGAVVTDDADLAARIRALHNFG  228 (424)
T ss_dssp             CCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCC---SSCEEEEESCHHHHHHHHHHHBTT
T ss_pred             CCHHHHHHHHHHcCCEEEEECccccCCeECCeecccccCEEEEeCCCCCCccC---CCCeEEEeCCHHHHHHHHHHHhcC
Confidence            9999999999999999999999996553321111  2589999998  76643   468999998555655554443321


Q ss_pred             C------------CCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC--
Q 021783          153 G------------SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG--  218 (307)
Q Consensus       153 ~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--  218 (307)
                      .            ..+++..+......++.++...++..++.+.+.+.|++.+++              ++...+..+  
T Consensus       229 ~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~--------------~~~~~~~~~~~  294 (424)
T 2po3_A          229 FDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYREHLADLPGV--------------LVADHDRHGLN  294 (424)
T ss_dssp             TTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTE--------------EECCGGGGSCC
T ss_pred             ccccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc--------------cccCCCCCCcc
Confidence            1            122334444444444444444444455555555555543322              111101011  


Q ss_pred             CCceEEEEeCC---HHHHHHHHhcCCcceeecCC
Q 021783          219 AGSVLSFLTGS---LALSKHVVETTKYFSITVSF  249 (307)
Q Consensus       219 ~~~~~~~~~~~---~~~~~~~~~~l~~~gi~v~~  249 (307)
                      ...++.+.+++   ......+.+.|.++||.++.
T Consensus       295 ~~~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~  328 (424)
T 2po3_A          295 NHQYVIVEIDEATTGIHRDLVMEVLKAEGVHTRA  328 (424)
T ss_dssp             CCCCEEEEECHHHHSSCHHHHHHHHHHTTEECBC
T ss_pred             ccEEEEEEECCccchhhHHHHHHHHHHCCCceec
Confidence            12456676652   11366777788888998875

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.88  E-value=7.8e-23  Score=176.93  Aligned_cols=244  Identities=12%  Similarity=0.051  Sum_probs=155.2

Q ss_pred             HHHHHhcCC---CCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHh-hcCCCceEEEEeCCCCCcc
Q 021783            5 AAVTHLLGT---GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVAS-AIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         5 ~~~~~~~~~---gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~-~l~~~~~~v~~~~~~n~tG   74 (307)
                      .++.+++.+   ||+|+++.++|.+.     ..++..| +++.++.+      |++++++ +++++|++|++++++||||
T Consensus        82 ~~~~~l~~~~~~g~~vi~~~~~~~~~-----~~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG  155 (360)
T 1w23_A           82 MLPMNLLTKGTIGNYVLTGSWSEKAL-----KEAKLLG-ETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYG  155 (360)
T ss_dssp             HHHHHHCCTTCEEEEEECSHHHHHHH-----HHHHTTS-EEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTT
T ss_pred             HHHHHhcCCCCcccEEEecchhHHHH-----HHHHHhC-CeEEeecccccCcCCccchHhhccCCCCCEEEEeCCCCCcc
Confidence            345566654   67788777776542     2346678 99888753      6788888 8888999999999999999


Q ss_pred             ccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH----
Q 021783           75 QICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ----  149 (307)
Q Consensus        75 ~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~----  149 (307)
                      .+++  +|   +++||+++|+|++|+.+..+ +...  .|++++|+||++ |++|  .|+++++++.+ +.+....    
T Consensus       156 ~~~~--~i---~~~~~~~li~D~a~~~~~~~~~~~~--~di~~~s~sK~~-~~~G--~G~~~~~~~~~-~~~~~~~~~~~  224 (360)
T 1w23_A          156 TQYQ--NF---PEINHAPLIADMSSDILSRPLKVNQ--FGMIYAGAQKNL-GPSG--VTVVIVKKDLL-NTKVEQVPTML  224 (360)
T ss_dssp             EECS--SC---CCCCSSCEEEECTTTTTSSCCCGGG--CSEEEEETTTTT-SCTT--CEEEEEEHHHH-CSCCTTCCGGG
T ss_pred             eecc--cc---cccCCceEEEechhhcCCCCcCccc--CCEEEEEccccc-CCCC--cEEEEEcHHHH-hhcccCCcchh
Confidence            9987  33   33899999999999987654 3333  389999999999 5777  89999986543 2211110    


Q ss_pred             --------HhcCCCCChhhHHHHhhcccc------HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhh
Q 021783          150 --------NAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ  215 (307)
Q Consensus       150 --------~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  215 (307)
                              .....+.+.........+++.      +....+...++++.+.+.|++.+.+...             +..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-------------~~~~  291 (360)
T 1w23_A          225 QYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVG-------------HAEK  291 (360)
T ss_dssp             CHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEE-------------SSCG
T ss_pred             hhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccc-------------cCCc
Confidence                    011122233333333333332      3334555666677777777654321010             0000


Q ss_pred             ccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CCh
Q 021783          216 AKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDV  291 (307)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~  291 (307)
                      ....+.++++.+++.....++.+.|...||.+..|..                         .++++|+|++.    +++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~-------------------------~~~~iRis~~~~~~~~~i  346 (360)
T 1w23_A          292 GSRSLMNVTFNLRNEELNQQFLAKAKEQGFVGLNGHR-------------------------SVGGCRASIYNAVPIDAC  346 (360)
T ss_dssp             GGBCSSEEEEECSSHHHHHHHHHHHHHTTEESCBCCT-------------------------TTCSEEEECCTTSCHHHH
T ss_pred             hhccCcEEEEEcCCCccHHHHHHHHHHCCeeeecCCC-------------------------CCCeEEEEecCCCCHHHH
Confidence            0112348888887655577888888888998866542                         13569999985    445


Q ss_pred             HHHHHHHHHHHh
Q 021783          292 NDLISDLDKALR  303 (307)
Q Consensus       292 ~~~i~~l~~~l~  303 (307)
                      +++++.|++.++
T Consensus       347 ~~~~~~l~~~~~  358 (360)
T 1w23_A          347 IALRELMIQFKE  358 (360)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            555555555543

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.87  E-value=2e-22  Score=176.78  Aligned_cols=240  Identities=13%  Similarity=0.151  Sum_probs=155.6

Q ss_pred             CCeEEEcCCCCcchHHHHhhhcccCCcE------------EEEecCCChHHHHhhcCCCceEEEEeCCCCCccc-c---c
Q 021783           14 GEEIVAGDDLYGGTDRLLSRVTPKTGVV------------VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQ-I---C   77 (307)
Q Consensus        14 gd~Vlv~~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~-~---~   77 (307)
                      +++|+++++.|.+....   .++..|.+            ++.++.+|++++++.+++++++|++++++||||. +   .
T Consensus       128 ~~~vi~~~~~yh~~~~~---~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~  204 (397)
T 2ord_A          128 KYRILSAHNSFHGRTLG---SLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKMSEDVCAVFLEPIQGESGIVPATKE  204 (397)
T ss_dssp             CCEEEEEBTCCCCSSHH---HHHHSBCHHHHGGGCSCCTTEEEECTTCHHHHHHHCCTTEEEEEECSEECTTTCEECCHH
T ss_pred             CceEEEEcCCcCCCchh---hhhccCChhhccccCCCCCCeeEecCCCHHHHHHHhhcCeEEEEEecccCCCCcccCCHH
Confidence            57899999988665431   22334444            7788888999999999989999999999999999 4   3


Q ss_pred             cHHHHHHHHHHcCCEEEEeCccCCCCcC--C---ccCCC--ccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHH
Q 021783           78 DIRKIAEMAHAHGALLLVDNSIMSPVLS--R---PLELG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  150 (307)
Q Consensus        78 ~~~~l~~~~~~~~~~li~D~a~~~~~~~--~---~~~~~--~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~  150 (307)
                      ++++|.++|++||+++|+|++|+ +...  .   ...++  .|++  |+||+++  +|++.|+++++++..  .+.....
T Consensus       205 ~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~--s~sK~~~--~G~r~G~~~~~~~~~--~l~~~~~  277 (397)
T 2ord_A          205 FLEEARKLCDEYDALLVFDEVQC-GMGRTGKLFAYQKYGVVPDVL--TTAKGLG--GGVPIGAVIVNERAN--VLEPGDH  277 (397)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEE--EECGGGG--TTSCCEEEEECSTTC--CCCTTSS
T ss_pred             HHHHHHHHHHHcCCEEEEEeccc-CCccCccchhhhhhCCCCCee--eeccccC--CCcCeEEEEEchHhc--ccCCCCc
Confidence            69999999999999999999997 2211  1   11223  5755  7799995  578899999987643  2221111


Q ss_pred             hcCCCCChhhHHHHhhccccHH--HHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC
Q 021783          151 AEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  228 (307)
Q Consensus       151 ~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  228 (307)
                      ......++..+..+..+++.+.  ...++..++.+.+.+.|++...    ..+.         .. ..++.+.++++.++
T Consensus       278 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~~~~---------~~-~~~~~g~~~~~~~~  343 (397)
T 2ord_A          278 GTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKE----EYDV---------VA-DVRGMGLMIGIQFR  343 (397)
T ss_dssp             CCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHH----HCTT---------EE-EEEEETTEEEEEEC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH----hCCc---------eE-EEEEEeEEEEEEEC
Confidence            1222344555555555543322  2344455555666666653210    0000         00 01124678888886


Q ss_pred             CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          229 SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       229 ~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                      +.....++.+.|..+||.++.|.                           ++++|++++.    ++++++++.|.+++++
T Consensus       344 ~~~~~~~l~~~l~~~gi~v~~~~---------------------------~~~iRis~~~~~~~e~i~~~~~~l~~~l~~  396 (397)
T 2ord_A          344 EEVSNREVATKCFENKLLVVPAG---------------------------NNTIRFLPPLTVEYGEIDLAVETLKKVLQG  396 (397)
T ss_dssp             TTSCHHHHHHHHHHTTEECEEET---------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHCCCEEccCC---------------------------CCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence            43336677788877888776532                           3469999653    6777788888777764

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.87  E-value=2.6e-22  Score=179.91  Aligned_cols=126  Identities=21%  Similarity=0.332  Sum_probs=106.8

Q ss_pred             cCCCC-----eEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCcccc-ccH
Q 021783           11 LGTGE-----EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQI-CDI   79 (307)
Q Consensus        11 ~~~gd-----~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~-~~~   79 (307)
                      .++||     +|+++++.|+++.    ..++..|++++.++.+     |+++|++++++++++|++++| ||+|.+ .++
T Consensus       148 ~~~Gd~~~r~~Vlv~~~~h~~~~----~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~~~t~~v~~~~p-n~~G~~~~~l  222 (474)
T 1wyu_B          148 EDRGEGRTRRVVLVPDSAHGSNP----ATASMAGYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNP-NTLGLFERRI  222 (474)
T ss_dssp             HHTTCTTTCCEEEEETTSCTHHH----HHHHHTTCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSS-CTTSCCCTTH
T ss_pred             HhcCCccCCCEEEEeCCcChhhH----HHHHHCCCEEEEecCCCCCCcCHHHHHHhhCCCceEEEEECC-CCCcccCCCH
Confidence            45887     9999999998888    5567789999999985     899999999989999999998 589998 699


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCc-C-CccCCCccEEEeccccccccCC---CceeEEEEEcChhH
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVL-S-RPLELGADIVMHSATKFIAGHS---DVMAGVLAVKGERL  141 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~-~-~~~~~~~d~~~~s~~K~~~g~~---g~~~G~~~~~~~~~  141 (307)
                      ++|.++|++||+++|+|++|+.+.. . .+..++.|++++|+||++++|.   |.++|+++++++..
T Consensus       223 ~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~  289 (474)
T 1wyu_B          223 LEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLA  289 (474)
T ss_dssp             HHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGG
T ss_pred             HHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHH
Confidence            9999999999999999999975543 1 4445689999999999997653   35689999987643

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.87  E-value=1.4e-20  Score=164.85  Aligned_cols=226  Identities=15%  Similarity=0.079  Sum_probs=156.1

Q ss_pred             HH-HHHHHh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCC---CceEEEEeCCCCC
Q 021783            3 AL-AAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP---WTKLVWVESPTNP   72 (307)
Q Consensus         3 al-~~~~~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~---~~~~v~~~~~~n~   72 (307)
                      |+ .++.++ +++||+|++++|+|+++.    ..++..|++++.++.+     |++++++.+++   ++++|++++   |
T Consensus        59 al~~~~~~l~~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~  131 (394)
T 1o69_A           59 ALHLALRVAGVKQDDIVLASSFTFIASV----APICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH---L  131 (394)
T ss_dssp             HHHHHHHHTTCCTTCEEEEESSSCGGGT----HHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC---G
T ss_pred             HHHHHHHHcCCCCCCEEEECCCccHHHH----HHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC---C
Confidence            44 455566 799999999999999998    4455689999999864     78999998875   799999875   8


Q ss_pred             ccccccHHHHHHHHHHcCCEEEEeCccCCCCcCCcc---C-CCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH
Q 021783           73 RQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL---E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  148 (307)
Q Consensus        73 tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~---~-~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~  148 (307)
                      +|...++++|.++|+++|+++|+|++|+.|......   . .+.|+.++|.+|.++ +.  ++|+++++++.+.+.+...
T Consensus       132 ~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~-~~--~~G~~~~~~~~l~~~l~~~  208 (394)
T 1o69_A          132 YGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIIT-TS--GGGMLIGKNKEKIEKARFY  208 (394)
T ss_dssp             GGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSC-CS--SCEEEEESCHHHHHHHHHH
T ss_pred             CCChhhHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCC-CC--CceEEEECCHHHHHHHHHH
Confidence            999999999999999999999999999976543211   1 246777777799884 33  3999999766565555443


Q ss_pred             HHhcCC--------------CCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhh
Q 021783          149 QNAEGS--------------GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS  214 (307)
Q Consensus       149 ~~~~~~--------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~  214 (307)
                      ......              ..+...+.+....++.++...++..++.+.+.+.|++.  + .+ .+.. .         
T Consensus       209 ~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~~~L~~~--~-~~-~~~~-~---------  274 (394)
T 1o69_A          209 STQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEY--F-SF-LDEL-E---------  274 (394)
T ss_dssp             TBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT--E-EC-CCCC-T---------
T ss_pred             HHhccccCccccccccCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--c-cc-cCCC-C---------
Confidence            222110              02334455544446667777777788888888888654  1 11 1110 0         


Q ss_pred             hccCCCceEEEEeCCH---------------------HHHHHHHhcCCcceeecCCCCc
Q 021783          215 QAKGAGSVLSFLTGSL---------------------ALSKHVVETTKYFSITVSFGSV  252 (307)
Q Consensus       215 ~~~~~~~~~~~~~~~~---------------------~~~~~~~~~l~~~gi~v~~g~~  252 (307)
                      .......++++.+++.                     .....+.+.|..+||.++.|..
T Consensus       275 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~  333 (394)
T 1o69_A          275 NSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWK  333 (394)
T ss_dssp             TEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCC
T ss_pred             CCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCC
Confidence            0001122567777531                     1477888889889999998864

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.87  E-value=1.5e-21  Score=171.43  Aligned_cols=260  Identities=17%  Similarity=0.152  Sum_probs=163.2

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCc--EEEEecC------CChHHHHhhcCC-CceEEEEeCCCCCccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV--VVKRVNT------CDLDEVASAIGP-WTKLVWVESPTNPRQQ   75 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~--~~~~v~~------~d~~~l~~~l~~-~~~~v~~~~~~n~tG~   75 (307)
                      .++.+++++||+|++++|+|+++...+ ..+...|.  +++.++.      .|++++++.+++ ++++|+++ ++| .|.
T Consensus       100 ~a~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~-~~~-~~~  176 (405)
T 2vi8_A          100 AVYFTVLEHGDTVLGMNLSHGGHLTHG-SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAA-AAA-YPR  176 (405)
T ss_dssp             HHHHHHCCTTCEEEEECGGGTCCTTTT-CTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEEC-CSS-CCS
T ss_pred             HHHHHhcCCCCEEEEecccccchhccc-chhhhccceeEEEecccccccCCcCHHHHHHHHHhcCCeEEEEe-CCC-CCc
Confidence            455567899999999999998775210 01123343  7777764      388999999875 78888874 344 366


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCC---CccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHh
Q 021783           76 ICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLEL---GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  151 (307)
Q Consensus        76 ~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~---~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~  151 (307)
                      ..++++|.++|++||+++|+|++|+.+... .....   +.|++++|+||+++|+.|   |++++++ .+.+.+......
T Consensus       177 ~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g---G~~~~~~-~~~~~l~~~~~~  252 (405)
T 2vi8_A          177 IIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG---GMILCQE-QFAKQIDKAIFP  252 (405)
T ss_dssp             CCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC---EEEEECH-HHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC---eEEEEcH-HHHHHHHhhhcc
Confidence            778999999999999999999999854321 11111   578999999999976664   9999884 454444443322


Q ss_pred             c-CCCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEE
Q 021783          152 E-GSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  225 (307)
Q Consensus       152 ~-~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  225 (307)
                      . .++...........+++     .+....++..++.+.+.+.|++. ++ .+             ..  +++.+.++++
T Consensus       253 ~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~-------------~~--~~~~~~~~~~  315 (405)
T 2vi8_A          253 GIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GF-TL-------------VS--GGTDNHLLLV  315 (405)
T ss_dssp             TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TC-EE-------------GG--GSCSSSEEEE
T ss_pred             cccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CC-eE-------------ec--CCCCceEEEE
Confidence            2 12222322222222332     23344555566666777777654 21 11             11  1123667788


Q ss_pred             EeCCH-HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec--------cCChHHHHH
Q 021783          226 LTGSL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--------IEDVNDLIS  296 (307)
Q Consensus       226 ~~~~~-~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~--------~~~~~~~i~  296 (307)
                      .++.. .....+.+.|..+||.++.|....      .. .          ....++++|+|++        .++++++++
T Consensus       316 ~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~------~~-~----------~~~~~~~iRis~~~~~~~~~~~~~i~~~~~  378 (405)
T 2vi8_A          316 DLRPQQLTGKTAEKVLDEVGITVNKNTIPY------DP-E----------SPFVTSGIRIGTAAVTTRGFGLEEMDEIAA  378 (405)
T ss_dssp             ECGGGTCCHHHHHHHHHHHTEECEEECCTT------CS-S----------CTTTCSEEEEECHHHHHTTCCHHHHHHHHH
T ss_pred             EccCCCCCHHHHHHHHHHcCceeccCcCcc------cc-C----------CCCCCCceEEeeeeeeecCCCHHHHHHHHH
Confidence            87531 135677777877899888765310      00 0          0012467999998        378888888


Q ss_pred             HHHHHHhcC
Q 021783          297 DLDKALRTG  305 (307)
Q Consensus       297 ~l~~~l~~~  305 (307)
                      .|.+++++.
T Consensus       379 ~l~~~~~~~  387 (405)
T 2vi8_A          379 IIGLVLKNV  387 (405)
T ss_dssp             HHHHHHTCT
T ss_pred             HHHHHHhcc
Confidence            888887654

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.87  E-value=7.7e-22  Score=172.82  Aligned_cols=120  Identities=16%  Similarity=0.145  Sum_probs=97.8

Q ss_pred             CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC---C----ChHHHHhhcCC---CceEEEEeCCCCCcccccc---
Q 021783           12 GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---C----DLDEVASAIGP---WTKLVWVESPTNPRQQICD---   78 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~---~----d~~~l~~~l~~---~~~~v~~~~~~n~tG~~~~---   78 (307)
                      .+||+|+++.|+|+++.    ..++..|++++.++.   +    |++++++.+++   +++++++++|+||||.+++   
T Consensus       115 ~~gd~vl~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~  190 (394)
T 2ay1_A          115 NPDLRVFVSDPTWPNHV----SIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQ  190 (394)
T ss_dssp             CTTCCEEEEESCCHHHH----HHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHH
T ss_pred             CCCCEEEEcCCCChhHH----HHHHHcCCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHH
Confidence            49999999999998887    556667899998887   3    78999998863   4677888999999999986   


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcC--------C-ccC-CCccEEEeccccccccCCCceeEEEEE
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLS--------R-PLE-LGADIVMHSATKFIAGHSDVMAGVLAV  136 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~--------~-~~~-~~~d~~~~s~~K~~~g~~g~~~G~~~~  136 (307)
                      +++|.++|++||+++|+|++|+.....        . ... .+.+++++|+||++ |++|+|+|++++
T Consensus       191 l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~riG~~~~  257 (394)
T 2ay1_A          191 WAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNF-GIYRERTGCLLA  257 (394)
T ss_dssp             HHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTT-TCGGGCEEEEEE
T ss_pred             HHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCC-cCcCCccceEEE
Confidence            668899999999999999999854321        1 111 23568899999999 668999999998

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.87  E-value=2.3e-22  Score=176.79  Aligned_cols=245  Identities=16%  Similarity=0.204  Sum_probs=159.9

Q ss_pred             CC-CeEEEcCCCCcchHHHHhhhc---------ccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccc-----
Q 021783           13 TG-EEIVAGDDLYGGTDRLLSRVT---------PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC-----   77 (307)
Q Consensus        13 ~g-d~Vlv~~~~~~~~~~~~~~~~---------~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~-----   77 (307)
                      +| |+|++++|.|+++........         ...+..+..++.+|++++++.+++++++|+++ |+||+|.+.     
T Consensus       126 ~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~-p~np~g~~~~~~~~  204 (406)
T 4adb_A          126 SHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALIDDSTCAVIVE-PIQGEGGVVPASNA  204 (406)
T ss_dssp             TTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHHHTTCSTTEEEEEEC-SEETTTTSEECCHH
T ss_pred             CCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHHHHHhcCCeEEEEEe-CCcCCCCCccCCHH
Confidence            55 999999999988753322221         12235777888889999999999999999999 899999765     


Q ss_pred             cHHHHHHHHHHcCCEEEEeCccC-CCCcCC-----ccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHh
Q 021783           78 DIRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  151 (307)
Q Consensus        78 ~~~~l~~~~~~~~~~li~D~a~~-~~~~~~-----~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~  151 (307)
                      ++++|.++|++||+++|+|++|+ .+....     ......|++  |+||+++  +|+++|+++++++ +.+.+......
T Consensus       205 ~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~--~G~r~G~~~~~~~-~~~~~~~~~~~  279 (406)
T 4adb_A          205 FLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLL--TTAKALG--GGFPVGALLATEE-CARVMTVGTHG  279 (406)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG--TTSCCEEEEECHH-HHHTCCTTSSC
T ss_pred             HHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEE--Eechhhc--CCCCeEEEEEcHH-HHhhhccCCcC
Confidence            59999999999999999999996 221111     112234655  6799995  5889999998754 43333322222


Q ss_pred             cCCCCChhhHHHHhhccccH--HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC
Q 021783          152 EGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  229 (307)
Q Consensus       152 ~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (307)
                      .....++..+..+...++.+  ....+...++.+.+.+.++....    .++.         + ...++.+.++++.+.+
T Consensus       280 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~---------~-~~~~~~g~~~~~~~~~  345 (406)
T 4adb_A          280 TTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINH----RYGL---------F-SEVRGLGLLIGCVLNA  345 (406)
T ss_dssp             CSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH----HHCC---------E-EEEEEETTEEEEEECT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH----hCCC---------c-eEEEEEEEEEEEEEeC
Confidence            23344555555555555433  33445555566666666654310    0000         0 0112346788888865


Q ss_pred             HH--HHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHh
Q 021783          230 LA--LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALR  303 (307)
Q Consensus       230 ~~--~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~  303 (307)
                      ..  ....+.+.+..+||.++.++                           ++++|++++.    +++++.++.|.++++
T Consensus       346 ~~~~~~~~~~~~l~~~gi~v~~~~---------------------------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~  398 (406)
T 4adb_A          346 DYAGQAKQISQEAAKAGVMVLIAG---------------------------GNVVRFAPALNVSEEEVTTGLDRFAAACE  398 (406)
T ss_dssp             TTTTCHHHHHHHHHHTTEECEESS---------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHCCcEEeecC---------------------------CCeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            32  46778888888899776533                           4569997754    667777777777765


Q ss_pred             c
Q 021783          304 T  304 (307)
Q Consensus       304 ~  304 (307)
                      +
T Consensus       399 ~  399 (406)
T 4adb_A          399 H  399 (406)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.87  E-value=9.7e-21  Score=166.97  Aligned_cols=260  Identities=17%  Similarity=0.150  Sum_probs=158.4

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhh-hcccCCcEEEEecC-----CChHHHHhhcC-CCceEEEEeCCCCCccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSR-VTPKTGVVVKRVNT-----CDLDEVASAIG-PWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~-~~~~~g~~~~~v~~-----~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~   77 (307)
                      .++.+++++||+|++++|+|+++...... .....+..++.++.     .|++++++.++ +++++|++++++|  |...
T Consensus       102 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--G~~~  179 (417)
T 3n0l_A          102 GVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGASAY--ARVI  179 (417)
T ss_dssp             HHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHCCSEEEECCSSC--CSCC
T ss_pred             HHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCCeEEEECCccc--CccC
Confidence            45566789999999999999776532111 11224455666665     38999999998 6899999888775  8899


Q ss_pred             cHHHHHHHHHHcCCEEEEeCccCCCCc-----CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhc
Q 021783           78 DIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE  152 (307)
Q Consensus        78 ~~~~l~~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~  152 (307)
                      ++++|.++|++||+++|+|++|+.+..     +.... +.|++++|+||+++|+.   +|+++++++.+.+.+.......
T Consensus       180 ~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g~~---~G~~~~~~~~~~~~~~~~~~~~  255 (417)
T 3n0l_A          180 DFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP-YAHVVSSTTHKTLRGPR---GGIIMTNDEELAKKINSAIFPG  255 (417)
T ss_dssp             CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT-TCSEEEEESSTTTCSCS---CEEEEESCHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc-cceEEEeeCccccCCCC---eeEEEECCHHHHHHHhhhhCCc
Confidence            999999999999999999999864432     21212 57999999999995543   7999998666666555443322


Q ss_pred             C-CCCChhhHHHHhhcc-----ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEE
Q 021783          153 G-SGLAPFDCWICLRGV-----KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  226 (307)
Q Consensus       153 ~-~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  226 (307)
                      . +............++     +.+....++..++.+.+.+.|++. ++ .+ ..              ....+.++++.
T Consensus       256 ~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~-~~--------------~~~~~~~~~~~  318 (417)
T 3n0l_A          256 IQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR-KF-KL-VS--------------DGTDNHLVLMS  318 (417)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TC-EE-GG--------------GSCSSSEEEEE
T ss_pred             ccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-Cc-ee-cc--------------CCCCceEEEEE
Confidence            1 122221111111111     233455566667777777777752 11 11 00              01234566777


Q ss_pred             eCCH-HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec--------cCChHHHHHH
Q 021783          227 TGSL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--------IEDVNDLISD  297 (307)
Q Consensus       227 ~~~~-~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~--------~~~~~~~i~~  297 (307)
                      +.+. .....+.+.|..+||.++.+........                 ....+.+|+++.        .++++++++.
T Consensus       319 ~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~-----------------~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~  381 (417)
T 3n0l_A          319 FLDREFSGKDADLALGNAGITANKNTVPGEIRS-----------------PFITSGLRLGTPALTARGFKEKEMEIVSNY  381 (417)
T ss_dssp             CTTSSSCHHHHHHHHHHTTEECEECCCTTCCSC-----------------TTTCSEEEEECHHHHHTTCCHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHcCeEEeccccCCCCcc-----------------cCCCCeeEecCHHHhhCCCCHHHHHHHHHH
Confidence            6422 1356666777778998875432110000                 112456999985        2678888888


Q ss_pred             HHHHHhc
Q 021783          298 LDKALRT  304 (307)
Q Consensus       298 l~~~l~~  304 (307)
                      |.++++.
T Consensus       382 l~~~l~~  388 (417)
T 3n0l_A          382 IADILDD  388 (417)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            8887754

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.87  E-value=1.3e-21  Score=171.40  Aligned_cols=238  Identities=16%  Similarity=0.171  Sum_probs=151.9

Q ss_pred             CCCCeEEEcCCCCcchHHHHhhhcccCCcE------------EEEecCCChHHHHhhcCCCceEEEEeCCCCCcccccc-
Q 021783           12 GTGEEIVAGDDLYGGTDRLLSRVTPKTGVV------------VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD-   78 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~-   78 (307)
                      .+||+|++++++|++.....   +...|.+            +..++..|++++++++++++++|++++++||||.+.+ 
T Consensus       128 ~~~~~vi~~~~~y~~~~~~~---~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~~  204 (395)
T 1vef_A          128 TGRKKFVAAMRGFSGRTMGS---LSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPAT  204 (395)
T ss_dssp             HSCCEEEEETTCCCCSSHHH---HHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECC
T ss_pred             hCCCeEEEEcCCcCCCchhh---hhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhccCEEEEEEeCccCCCCccCCC
Confidence            57899999999986654321   2223332            5667778999999999988999999888899999887 


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCccC-CCCcCC-----ccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           79 ---IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        79 ---~~~l~~~~~~~~~~li~D~a~~-~~~~~~-----~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                         +++|.++|++||+++|+|++|+ .+....     ....+.|++  |+||++++  |.+.|+++++++ +.+.+....
T Consensus       205 ~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~--g~~~G~~~~~~~-~~~~l~~~~  279 (395)
T 1vef_A          205 PEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKALGG--GVPLGVAVMREE-VARSMPKGG  279 (395)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGT--TSSCEEEEEEHH-HHHTSCTTS
T ss_pred             HHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEE--EEcccccC--CCceEEEEehHH-HHhhhccCC
Confidence               9999999999999999999998 221111     112245755  78999953  677999999865 433322211


Q ss_pred             HhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEe
Q 021783          150 NAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  227 (307)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  227 (307)
                      .......+...+..+..+++.+..  ..+...++.+.+.+.+++...      +         ... ..++.+.++++.+
T Consensus       280 ~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~---------~~~-~~~~~g~~~~~~~  343 (395)
T 1vef_A          280 HGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPS------P---------KIR-EVRGMGLMVGLEL  343 (395)
T ss_dssp             SCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCC------T---------TEE-EEEEETTEEEEEE
T ss_pred             cCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc------C---------ceE-EEEEEEEEEEEEE
Confidence            111223444555555555554332  234445555566666654321      0         000 0122467888888


Q ss_pred             CCHHHHHHHHhcCC-cceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHH
Q 021783          228 GSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKAL  302 (307)
Q Consensus       228 ~~~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l  302 (307)
                      ++.  ...+.+.|. .+||.++.+.                           ++++||+++.    +++++.++.|.+++
T Consensus       344 ~~~--~~~l~~~l~~~~gi~v~~~~---------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l  394 (395)
T 1vef_A          344 KEK--AAPYIARLEKEHRVLALQAG---------------------------PTVIRFLPPLVIEKEDLERVVEAVRAVL  394 (395)
T ss_dssp             SSC--SHHHHHHHHHHHCEECEESS---------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             cCh--HHHHHHHHHHHCCeEEecCC---------------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            641  456777776 7888776531                           4569999875    45555566665544

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.87  E-value=6.4e-22  Score=178.03  Aligned_cols=241  Identities=15%  Similarity=0.159  Sum_probs=161.3

Q ss_pred             EEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCc------eEEEEeCCCCCccccccHHHHHHH
Q 021783           17 IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWT------KLVWVESPTNPRQQICDIRKIAEM   85 (307)
Q Consensus        17 Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~------~~v~~~~~~n~tG~~~~~~~l~~~   85 (307)
                      |+++.++|+++.    ..++..|++++.+|.+     |+++|++++++++      .+|++++++|+||.+.|+++|.++
T Consensus       185 v~~s~~~h~s~~----~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~l  260 (486)
T 1js3_A          185 AYASDQAHSSVE----RAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPI  260 (486)
T ss_dssp             EEEETTCCHHHH----HHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHH
T ss_pred             EEECCCCcHHHH----HHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHH
Confidence            788999998877    6667789999999974     8999999997555      388899999999999999999999


Q ss_pred             HHHcCCEEEEeCccCCCCcC--CccC-----CCccEEEeccccccccCCCceeEEEEEcChhH-HHHHH---H-HHH-hc
Q 021783           86 AHAHGALLLVDNSIMSPVLS--RPLE-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERL-AKELY---F-LQN-AE  152 (307)
Q Consensus        86 ~~~~~~~li~D~a~~~~~~~--~~~~-----~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~-~~~~~---~-~~~-~~  152 (307)
                      |++||+++|+|++|+.+.+.  ....     .++|.+++|+||++++|.+  +|+++++++.. .+.+.   . ... ..
T Consensus       261 a~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~--~G~l~~~~~~~l~~~~~~~~~yl~~~~~  338 (486)
T 1js3_A          261 CHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFD--CSAMWVKRRTDLTGAFKLDPVYLKHSHQ  338 (486)
T ss_dssp             HHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSS--CEEEEESCHHHHHGGGC-----------
T ss_pred             HHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcc--eEEEEEeCHHHHHHHhcCCchhhCCCcc
Confidence            99999999999999876542  1111     2689999999999976665  99999987753 22221   0 100 00


Q ss_pred             ---------------CCCCChhhHHHHhh--ccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhh
Q 021783          153 ---------------GSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ  215 (307)
Q Consensus       153 ---------------~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  215 (307)
                                     +........|.++.  +.+.+....++..++++.+.+.+++.+++. +..+              
T Consensus       339 ~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~-~~~~--------------  403 (486)
T 1js3_A          339 GSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFE-VCAE--------------  403 (486)
T ss_dssp             -CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEE-ECSC--------------
T ss_pred             cccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeE-EeCC--------------
Confidence                           00112233444333  234455666777778888888887665331 1110              


Q ss_pred             ccCCCceEEEEeCCH-HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-----C
Q 021783          216 AKGAGSVLSFLTGSL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-----E  289 (307)
Q Consensus       216 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-----~  289 (307)
                      +  ..++++|.+.+. .....+.+.|...|+....+..                      .+ +.+++|+++..     +
T Consensus       404 ~--~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~----------------------~~-~~~~lRi~~~~~~~t~~  458 (486)
T 1js3_A          404 V--TLGLVCFRLKGSDGLNEALLERINSARKIHLVPCR----------------------LR-GQFVLRFAICSRKVESG  458 (486)
T ss_dssp             C--CSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEE----------------------ET-TEEEEEEECCCTTCCHH
T ss_pred             C--ceeEEEEEecChHHHHHHHHHHHHhcCCEEEEEEE----------------------EC-CEEEEEEEeCCCCCCHH
Confidence            1  256788888642 2246677777666653221111                      00 24579999843     3


Q ss_pred             ChHHHHHHHHHHHh
Q 021783          290 DVNDLISDLDKALR  303 (307)
Q Consensus       290 ~~~~~i~~l~~~l~  303 (307)
                      +++++++.|.+.++
T Consensus       459 di~~~~~~l~~~~~  472 (486)
T 1js3_A          459 HVRLAWEHIRGLAA  472 (486)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            67777777776654

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.86  E-value=1.1e-20  Score=166.89  Aligned_cols=259  Identities=15%  Similarity=0.145  Sum_probs=153.1

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCC--cEEEEecCC------ChHHHHhhcC-CCceEEEEeCCCCCccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG--VVVKRVNTC------DLDEVASAIG-PWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g--~~~~~v~~~------d~~~l~~~l~-~~~~~v~~~~~~n~tG~   75 (307)
                      .++.+++++||+|++++|+|++..... ......|  .+++.++.+      |++++++.+. +++++|++++++|  |.
T Consensus       109 ~al~~~~~~gd~Vi~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--~~  185 (425)
T 3ecd_A          109 AVMLALAKPGDTVLGMSLDAGGHLTHG-AKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAY--PR  185 (425)
T ss_dssp             HHHHHHCCTTCEEEEECC-------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCC--CS
T ss_pred             HHHHHccCCCCEEEEcccccccceecc-hhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccC--CC
Confidence            455667899999999999997722111 1111233  355666654      8999999997 6899999998888  46


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCccCCCCc-----CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHH
Q 021783           76 ICDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  150 (307)
Q Consensus        76 ~~~~~~l~~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~  150 (307)
                      ..++++|.++|++||+++|+|++|+.+..     ..... ..|++++|+||+++|+   ++|+++++++.+.+.+.....
T Consensus       186 ~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g~---~~g~~~~~~~~~~~~~~~~~~  261 (425)
T 3ecd_A          186 KLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE-HAHVVTSTTHKTLRGP---RGGFVLTNDEEIAKKINSAVF  261 (425)
T ss_dssp             CCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGCCC---SCEEEEESCHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchh-cCcEEEecCCcccCCC---CcEEEEeCCHHHHHHHHhhhC
Confidence            78899999999999999999999764432     12222 3789999999999654   479999987666655544332


Q ss_pred             hcC-CCCCh-hhHHHHhh---cc-ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEE
Q 021783          151 AEG-SGLAP-FDCWICLR---GV-KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  224 (307)
Q Consensus       151 ~~~-~~~~~-~~~~~~~~---~l-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  224 (307)
                      ... ..... .......+   .. +.+....++..++.+.+.+.|++.. +              .+..  +...+.+++
T Consensus       262 ~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~--------------~~~~--~~~~~~~~~  324 (425)
T 3ecd_A          262 PGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGG-V--------------DLVT--GGTDNHLLL  324 (425)
T ss_dssp             -----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-C--------------EEGG--GSCSSSEEE
T ss_pred             ccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCC-C--------------eecc--CCCCceEEE
Confidence            211 11222 11111111   11 2334455666667777777776521 1              1111  112456777


Q ss_pred             EEeCC-HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec--------cCChHHHH
Q 021783          225 FLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--------IEDVNDLI  295 (307)
Q Consensus       225 ~~~~~-~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~--------~~~~~~~i  295 (307)
                      +.+.+ ......+.+.+..+||.++.+.......                 ....++.+|++++        .+++++++
T Consensus       325 ~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~-----------------~~~~~~~iRi~~~~~~~~~~~~e~i~~~~  387 (425)
T 3ecd_A          325 VDLRPKGLKGAQVEQALERAGITCNKNGIPFDPE-----------------KPTITSGIRLGTPAGTTRGFGAAEFREVG  387 (425)
T ss_dssp             EECGGGTCCHHHHHHHHHHTTEECEECCCTTCSS-----------------CTTTCSEEEEESHHHHHTTCCHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHcCCEecccccCCCCC-----------------CCCCccceeccchhheeccCCHHHHHHHH
Confidence            77743 2235677777777899887443200000                 0112467999953        25667777


Q ss_pred             HHHHHHHhc
Q 021783          296 SDLDKALRT  304 (307)
Q Consensus       296 ~~l~~~l~~  304 (307)
                      +.|.+++++
T Consensus       388 ~~l~~~l~~  396 (425)
T 3ecd_A          388 RLILEVFEA  396 (425)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            777766654

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.86  E-value=8.6e-21  Score=168.46  Aligned_cols=124  Identities=23%  Similarity=0.236  Sum_probs=101.6

Q ss_pred             hcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHH
Q 021783           10 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM   85 (307)
Q Consensus        10 ~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~   85 (307)
                      .+++||+|++++++|+++...+...++..|++++.++..    |+++    ++++|++|++++| ||||.+.|+++|.++
T Consensus       146 ~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~~d~~~----i~~~t~~v~i~~p-n~tG~~~~l~~i~~l  220 (438)
T 1wyu_A          146 RETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTPLPE----VGEEVGAVVVQNP-NFLGALEDLGPFAEA  220 (438)
T ss_dssp             HHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCCCCC----CCTTEEEEEEESS-CTTSBCCCHHHHHHH
T ss_pred             hcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCcCCccCHHH----hCCCeEEEEEECC-CCCeEEecHHHHHHH
Confidence            357899999999999999888877778899999999863    3443    6778999999999 999999999999999


Q ss_pred             HHHcCCEEEEeCc-cCCCCcCCccCCCccEEEecccc-----ccccCCCceeEEEEEcChhH
Q 021783           86 AHAHGALLLVDNS-IMSPVLSRPLELGADIVMHSATK-----FIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        86 ~~~~~~~li~D~a-~~~~~~~~~~~~~~d~~~~s~~K-----~~~g~~g~~~G~~~~~~~~~  141 (307)
                      |+++|+++++|.. ++.|....+..+++|++++|.+|     +++|| +  +|+++++++..
T Consensus       221 a~~~g~~vivd~d~~a~g~~~~~~~~g~D~~~~s~kk~~~~~~~~Gp-~--~G~l~~~~~~~  279 (438)
T 1wyu_A          221 AHGAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGLPMGFGGP-H--FGFLATKKAFV  279 (438)
T ss_dssp             HHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEECTTTTCCCGGGCS-C--CEEEEECGGGG
T ss_pred             HHHcCCEEEEEechhhccCcCCCccCCCCEEEECCcccCCCccCCCC-C--eeEEEEcHHHH
Confidence            9999999997754 54555444456789999999666     56566 5  89999986643

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.86  E-value=1.3e-21  Score=168.71  Aligned_cols=249  Identities=17%  Similarity=0.111  Sum_probs=162.8

Q ss_pred             HHHHHhcCC--CCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccc
Q 021783            5 AAVTHLLGT--GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         5 ~~~~~~~~~--gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~   77 (307)
                      .++..++++  ||+|++...++.+.  .|...++..|..++.++.+     ++++++..++++|++|.+++.+|.||.+.
T Consensus        92 ~a~~~l~~~~~Gd~v~~~~~g~~~~--~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~  169 (377)
T 3e77_A           92 AVPLNLIGLKAGRCADYVVTGAWSA--KAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEF  169 (377)
T ss_dssp             HHHHHHGGGSTTCEEEECCCSHHHH--HHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTTTEEC
T ss_pred             HHHHhccCCCCCCeEEEEECCHHHH--HHHHHHHHhCCceEEeccCCCcCCCCChHHhccCCCccEEEEeCccCchheEc
Confidence            455556654  99999888777554  4567788899988877753     56777777889999999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHH-------H--HH
Q 021783           78 DIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-------L--YF  147 (307)
Q Consensus        78 ~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~-------~--~~  147 (307)
                      |+     +|+++|+++++|++++.|..+ +..+++  ++++|.||++ ||+|  .|+++++++.+.+.       +  ..
T Consensus       170 pi-----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~-gp~G--~g~l~~~~~~l~~~~~~~p~~~~~~~  239 (377)
T 3e77_A          170 DF-----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNV-GSAG--VTVVIVRDDLLGFALRECPSVLEYKV  239 (377)
T ss_dssp             SS-----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTT-SCTT--CEEEEEETTSCSCCCTTSCGGGCHHH
T ss_pred             hh-----hhccCCCEEEEEcccccCCCCCchhhcC--EEEEeccccc-CCCc--cEEEEEcHHHHhhccCCCCchhhHHH
Confidence            98     477899999999999999988 777776  5889999999 7999  99999987653210       1  11


Q ss_pred             HH-Hh-cCCCCChhhHHHHhhcccc------HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCC
Q 021783          148 LQ-NA-EGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  219 (307)
Q Consensus       148 ~~-~~-~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (307)
                      .. .. ...+++....+....+++.      ++...++..+.++.+.+.+++.+++. + .+.   .        +....
T Consensus       240 ~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~-~-~~~---~--------~~~rs  306 (377)
T 3e77_A          240 QAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFY-V-CPV---E--------PQNRS  306 (377)
T ss_dssp             HHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSE-E-CCS---C--------GGGBC
T ss_pred             HhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCce-e-cCC---C--------HHHcC
Confidence            11 11 1123333333333333432      33344455566666777776654331 1 110   0        00112


Q ss_pred             CceEEEEeCC----HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccC----Ch
Q 021783          220 GSVLSFLTGS----LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE----DV  291 (307)
Q Consensus       220 ~~~~~~~~~~----~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~----~~  291 (307)
                      +.+++|.+++    .+....+++.+..+||.++.|..                         ..+.+|+|+...    |+
T Consensus       307 ~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~-------------------------~~g~iRiS~~~~~t~edI  361 (377)
T 3e77_A          307 KMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHR-------------------------SVGGIRASLYNAVTIEDV  361 (377)
T ss_dssp             SSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCT-------------------------TTCSEEEECCTTSCHHHH
T ss_pred             CcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCC-------------------------cCCEEEEECCCCCCHHHH
Confidence            3468999875    22225677777778998876642                         123499999864    44


Q ss_pred             HHHHHHHHHHHh
Q 021783          292 NDLISDLDKALR  303 (307)
Q Consensus       292 ~~~i~~l~~~l~  303 (307)
                      +.+++.|+++++
T Consensus       362 d~l~~al~~~~~  373 (377)
T 3e77_A          362 QKLAAFMKKFLE  373 (377)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            555555555444

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.86  E-value=2.2e-20  Score=173.56  Aligned_cols=184  Identities=12%  Similarity=0.018  Sum_probs=129.8

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhh-cccCCcEEEEecC----------CChHHH-----HhhcCCC------c-
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRV-TPKTGVVVKRVNT----------CDLDEV-----ASAIGPW------T-   61 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~-~~~~g~~~~~v~~----------~d~~~l-----~~~l~~~------~-   61 (307)
                      +++.+++++||+|+++.++|.++.    .. ++..|+++++++.          .|++++     +++++++      + 
T Consensus       204 ~ai~al~~pGD~VLv~~~~H~S~~----~~~~~l~Ga~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~  279 (730)
T 1c4k_A          204 TVTSALVSNGDLVLFDRNNHKSVY----NSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWK  279 (730)
T ss_dssp             HHHHHHCCTTCEEEEETTCCHHHH----HHHTTTTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCS
T ss_pred             HHHHHhcCCCCEEEEcCCchHHHH----HHHHHHCCCEEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCccccccc
Confidence            677778999999999999998887    44 6778999988864          177888     8888755      5 


Q ss_pred             ---eEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCccCCCCc--C-----Ccc---CCCcc----EEEeccccccc
Q 021783           62 ---KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL--S-----RPL---ELGAD----IVMHSATKFIA  124 (307)
Q Consensus        62 ---~~v~~~~~~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~--~-----~~~---~~~~d----~~~~s~~K~~~  124 (307)
                         +++++++| |++|.+.|+++|.++|+++|+++++|++|+.+..  +     ...   .+++|    ++++|+||+++
T Consensus       280 ~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~  358 (730)
T 1c4k_A          280 RPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQA  358 (730)
T ss_dssp             CCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSS
T ss_pred             CCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCC
Confidence               89999998 5899999999999999999999999999974321  1     112   33677    99999999998


Q ss_pred             cCCCceeEEEEEcChhH--------HHHHHHHHHhc-CCCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHh
Q 021783          125 GHSDVMAGVLAVKGERL--------AKELYFLQNAE-GSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLA  190 (307)
Q Consensus       125 g~~g~~~G~~~~~~~~~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~  190 (307)
                      |+++  +|+++++++.+        ...+....... .++++.........+++     ....++++..++++.+++.++
T Consensus       359 g~~~--gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~  436 (730)
T 1c4k_A          359 GFSQ--TSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLI  436 (730)
T ss_dssp             CCTT--CEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCC--EEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence            8776  78888776643        12222222222 22233222211111221     234567777888888888887


Q ss_pred             c-CCCc
Q 021783          191 S-HPRV  195 (307)
Q Consensus       191 ~-~~~~  195 (307)
                      + .+++
T Consensus       437 ~~i~g~  442 (730)
T 1c4k_A          437 KAGSMF  442 (730)
T ss_dssp             HTTCSS
T ss_pred             hhCCCe
Confidence            7 4443

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.86  E-value=6.8e-21  Score=164.50  Aligned_cols=246  Identities=13%  Similarity=0.059  Sum_probs=153.9

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcCCC-------ceEEEEeCCCCCc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPW-------TKLVWVESPTNPR   73 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~~~-------~~~v~~~~~~n~t   73 (307)
                      .++..++++||+|++++|+|+++...  ..++..|++++.++.+    |++++++.++++       +++|+++++ |||
T Consensus        81 ~~~~~~~~~gd~vl~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~pt  157 (359)
T 1svv_A           81 IACSLALRPWEAVIATQLGHISTHET--GAIEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNT-TEV  157 (359)
T ss_dssp             HHHHHHCCTTEEEEEETTSHHHHSST--THHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTT
T ss_pred             HHHHHHhCCCCEEEEcccchHHHHHH--HHHhcCCCeeEEEeCCCCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCC
Confidence            45556788999999999999887631  1356789999999975    589999988754       899999998 789


Q ss_pred             ccccc---HHHHHHHHHHcCCEEEEeCcc---CCCCcC-CccC----CCccEEEeccccccccCCCceeEEEEEcChhHH
Q 021783           74 QQICD---IRKIAEMAHAHGALLLVDNSI---MSPVLS-RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  142 (307)
Q Consensus        74 G~~~~---~~~l~~~~~~~~~~li~D~a~---~~~~~~-~~~~----~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~  142 (307)
                      |.++|   +++|.++|++||+++|+|++|   +.+..+ ....    .+.|+++.|++|+. ++.|  .|+++++++.. 
T Consensus       158 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g-~~~~--~g~l~~~~~~~-  233 (359)
T 1svv_A          158 GTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAG-GMFG--EALIILNDALK-  233 (359)
T ss_dssp             SCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTT-CSSC--EEEEECSGGGC-
T ss_pred             ceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCC-CCCc--eEEEEEcccHH-
Confidence            99998   999999999999999999999   434433 2221    35799999999985 6655  79999876543 


Q ss_pred             HHHHHHHHhcCC--CCChhhHHHHhhccc--cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          143 KELYFLQNAEGS--GLAPFDCWICLRGVK--TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       143 ~~~~~~~~~~~~--~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      +.+.......+.  .............++  .+....++..++.+.+.+.| +.+++        .-.      .   ..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~--------~~~------~---~~  295 (359)
T 1svv_A          234 PNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGL-EACGI--------RLA------W---PS  295 (359)
T ss_dssp             TTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH-HHTTC--------CBS------S---CC
T ss_pred             HHHHHHHhcCCcccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-ccCCe--------EEc------c---CC
Confidence            223222111221  111111111111232  23344555566666676666 32221        100      0   11


Q ss_pred             CCceEEEEeCCHHHHHHHHhcCCcc-eeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHH
Q 021783          219 AGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVND  293 (307)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~  293 (307)
                      .++++++.++     .++.+.|.++ ||.+ ++..      +                 ..++++|++++.    +++++
T Consensus       296 ~~~~~~~~~~-----~~~~~~l~~~~gi~v-~~~~------~-----------------~~~~~iRi~~~~~~~~~~i~~  346 (359)
T 1svv_A          296 ASNQLFPILE-----NTMIAELNNDFDMYT-VEPL------K-----------------DGTCIMRLCTSWATEEKECHR  346 (359)
T ss_dssp             SSSEECBEEE-----HHHHHHHTTTEECEE-EEEE------T-----------------TTEEEEEEECCTTCCHHHHHH
T ss_pred             ccceEEEEcC-----HHHHHHHHHhcCEEE-Eecc------c-----------------CCCceEEEEccCcCCHHHHHH
Confidence            2445555554     3566777777 8877 2110      0                 124579999875    45666


Q ss_pred             HHHHHHHHHhc
Q 021783          294 LISDLDKALRT  304 (307)
Q Consensus       294 ~i~~l~~~l~~  304 (307)
                      .++.|.+++++
T Consensus       347 ~~~~l~~~~~~  357 (359)
T 1svv_A          347 FVEVLKRLVAS  357 (359)
T ss_dssp             HHHHHHHC---
T ss_pred             HHHHHHHHHhc
Confidence            66666665544

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.85  E-value=6.1e-21  Score=168.50  Aligned_cols=246  Identities=14%  Similarity=0.171  Sum_probs=155.0

Q ss_pred             CC-CeEEEcCCCCcchHHHHhhhcc---------cCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCcccc----cc
Q 021783           13 TG-EEIVAGDDLYGGTDRLLSRVTP---------KTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI----CD   78 (307)
Q Consensus        13 ~g-d~Vlv~~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~----~~   78 (307)
                      +| ++|+++++.|.+..........         .....+..++.+|++++++.+++++++|++++++|++|..    .+
T Consensus       144 ~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~le~~i~~~~~~vi~~p~~~~gG~~~~~~~~  223 (420)
T 2pb2_A          144 PFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEF  223 (420)
T ss_dssp             TTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHH
T ss_pred             CCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCCHHHHHHHhccCceEEEEeCCcCCCCeecCCHHH
Confidence            67 5999999999776432211111         1112367778889999999999899999999999988862    36


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCC-CCcCCc-----cCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhc
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMS-PVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE  152 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~-~~~~~~-----~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~  152 (307)
                      +++|.++|++||+++|+|++|.. +.....     .....|++  |++|+++  +|+++|+++++++ +.+.+.......
T Consensus       224 l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii--t~sK~l~--~G~~iG~~~~~~~-l~~~l~~~~~~~  298 (420)
T 2pb2_A          224 LKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL--TSAKALG--GGFPVSAMLTTQE-IASAFHVGSHGS  298 (420)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG--TTSCCEEEEECHH-HHTTCC----CC
T ss_pred             HHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE--Eeccccc--CCCceEEEEEhHH-HHHhhcCCCcCc
Confidence            99999999999999999999952 111111     12235766  6899995  5788999999855 443332221222


Q ss_pred             CCCCChhhHHHHhhccccH--HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH
Q 021783          153 GSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  230 (307)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (307)
                      ....++..+..+...++.+  ....++..++.+.+.+.|++...    .++.+.          ..++.+.++++.+...
T Consensus       299 t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~~~~~~----------~~~~~g~~~~v~~~~~  364 (420)
T 2pb2_A          299 TYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDE----QFDIFS----------DIRGMGLLIGAELKPK  364 (420)
T ss_dssp             EECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH----HHCCEE----------EEEEETTEEEEEECGG
T ss_pred             ccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh----cCCCeE----------EEEecceEEEEEECCC
Confidence            2234555566555555433  23344445555555555543210    001000          0122467888888643


Q ss_pred             H--HHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          231 A--LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       231 ~--~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                      .  ....+.+.|..+||.++++.                           ++++|++++.    +++++.++.|.+++++
T Consensus       365 ~~~~~~~l~~~l~~~Gi~v~~~~---------------------------~~~iRl~~~~~~t~eei~~~~~~l~~~l~~  417 (420)
T 2pb2_A          365 YKGRARDFLYAGAEAGVMVLNAG---------------------------ADVMRFAPSLVVEEADIHEGMQRFAQAVGK  417 (420)
T ss_dssp             GTTCHHHHHHHHHHTTEECEESS---------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCEEEeCC---------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            2  36778888877898776532                           3459999754    6778888888877754

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.85  E-value=2.2e-21  Score=175.32  Aligned_cols=121  Identities=14%  Similarity=0.050  Sum_probs=99.9

Q ss_pred             C-eEEEcCCCCcchHHHHhhhcccCCc---EEEEecCC-----ChHHHHhhcCC------CceEEEEeCCCCCccccccH
Q 021783           15 E-EIVAGDDLYGGTDRLLSRVTPKTGV---VVKRVNTC-----DLDEVASAIGP------WTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus        15 d-~Vlv~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~-----d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~~   79 (307)
                      + +|++++++|+++...+    +..|.   +++.+|.+     |+++|++++++      ++++|++++++|+||.+.|+
T Consensus       189 ~~~v~~s~~~h~s~~~~~----~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l  264 (504)
T 2okj_A          189 KLVLFTSEQSHYSIKKAG----AALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPI  264 (504)
T ss_dssp             CEEEEEETTSCTHHHHHH----HHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCH
T ss_pred             CeEEEECCcchHHHHHHH----HHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCH
Confidence            6 7999999999887443    33444   88888875     89999999874      58999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCC------ccC-CCccEEEeccccccccCCCceeEEEEEcChhH
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSR------PLE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~------~~~-~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~  141 (307)
                      ++|.++|++||+++|+|++|+.+....      ... .++|+++.|+||++++|.+  +|+++++++.+
T Consensus       265 ~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~--~g~l~~~~~~~  331 (504)
T 2okj_A          265 QEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQ--CSAILVKEKGI  331 (504)
T ss_dssp             HHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSC--CEEEEESSTTH
T ss_pred             HHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcc--eEEEEEECHHH
Confidence            999999999999999999998665431      111 2689999999999977766  99999987544

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.85  E-value=2.3e-21  Score=173.53  Aligned_cols=246  Identities=13%  Similarity=0.112  Sum_probs=164.6

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcCCC------ceEEEEeCCCCCccccccHHHH
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPW------TKLVWVESPTNPRQQICDIRKI   82 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~~~------~~~v~~~~~~n~tG~~~~~~~l   82 (307)
                      ++++|+++..+|.+..    ..++..|++++.+|.+    |+++|+++++++      +.+|++++++|++|.+.|+++|
T Consensus       181 ~~~~vi~s~~~H~s~~----~~~~~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I  256 (475)
T 3k40_A          181 GKLVGYCSDQAHSSVE----RAGLLGGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDEC  256 (475)
T ss_dssp             HHEEEEEETTSCHHHH----HHHHHHTCEEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHH
T ss_pred             CCeEEEECCCchHHHH----HHHHHcCCceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHH
Confidence            4578999999998887    5566789999999984    899999998743      6788889999999999999999


Q ss_pred             HHHHHHcCCEEEEeCccCCCCcCCc--c--CC---CccEEEeccccccccCCCceeEEEEEcChhH-HHHHHHHHHhc--
Q 021783           83 AEMAHAHGALLLVDNSIMSPVLSRP--L--EL---GADIVMHSATKFIAGHSDVMAGVLAVKGERL-AKELYFLQNAE--  152 (307)
Q Consensus        83 ~~~~~~~~~~li~D~a~~~~~~~~~--~--~~---~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~-~~~~~~~~~~~--  152 (307)
                      .++|++||+++++|++|+.+.....  .  ..   .+|.+++|+||++++|.|  +|+++++++.. .+.+.....+.  
T Consensus       257 ~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g--~g~l~~~~~~~l~~~~~~~~~yl~~  334 (475)
T 3k40_A          257 GPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFD--CSAMWLKDPSWVVNAFNVDPLYLKH  334 (475)
T ss_dssp             HHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSS--CEEEEESSGGGC-------------
T ss_pred             HHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCc--eEEEEEeCHHHHHHHhcCCccccCC
Confidence            9999999999999999987643211  1  11   369999999999988888  89999987654 22211100000  


Q ss_pred             ---------------CC-CCChhhHHHHhh--ccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhh
Q 021783          153 ---------------GS-GLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS  214 (307)
Q Consensus       153 ---------------~~-~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~  214 (307)
                                     .+ .......|..+.  +.+.+....++..++++.+.+.+++.+++. +..+             
T Consensus       335 ~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~-l~~~-------------  400 (475)
T 3k40_A          335 DMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFE-LAAE-------------  400 (475)
T ss_dssp             --------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEE-ESSC-------------
T ss_pred             CcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEE-EecC-------------
Confidence                           00 011223333332  234556667777888888888888765431 1111             


Q ss_pred             hccCCCceEEEEeCC-HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-----
Q 021783          215 QAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-----  288 (307)
Q Consensus       215 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-----  288 (307)
                         ...++++|.+.+ .....++.+.+...|.....         |...              .+..++|+++..     
T Consensus       401 ---~~~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~---------~~~~--------------~g~~~lR~~~~~~~tt~  454 (475)
T 3k40_A          401 ---INMGLVCFRLKGSNERNEALLKRINGRGHIHLV---------PAKI--------------KDVYFLRMAICSRFTQS  454 (475)
T ss_dssp             ---CBTTEEEEEESSCHHHHHHHHHHHHHHTSCBCE---------EEEE--------------TTEEEEEEECCCTTCCH
T ss_pred             ---CceEEEEEEeCCchHHHHHHHHHHHhCCcEEEE---------eeEE--------------CCEEEEEEEeCCCCCCH
Confidence               135788888853 34467777877766543211         1000              024569999863     


Q ss_pred             CChHHHHHHHHHHHhc
Q 021783          289 EDVNDLISDLDKALRT  304 (307)
Q Consensus       289 ~~~~~~i~~l~~~l~~  304 (307)
                      +|++++++.|++..++
T Consensus       455 ~di~~~~~~i~~~~~~  470 (475)
T 3k40_A          455 EDMEYSWKEVSAAADE  470 (475)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4677777777666543

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.85  E-value=3.8e-21  Score=173.39  Aligned_cols=246  Identities=15%  Similarity=0.145  Sum_probs=158.2

Q ss_pred             CC-eEEEcCCCCcchHHHHhhhcccCCc---EEEEecCC-----ChHHHHhhcCCC----ce--EEEEeCCCCCcccccc
Q 021783           14 GE-EIVAGDDLYGGTDRLLSRVTPKTGV---VVKRVNTC-----DLDEVASAIGPW----TK--LVWVESPTNPRQQICD   78 (307)
Q Consensus        14 gd-~Vlv~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~-----d~~~l~~~l~~~----~~--~v~~~~~~n~tG~~~~   78 (307)
                      || +|+++.++|+++...    ++..|.   +++.+|.+     |+++|+++++++    ++  +|++++++|+||.+.|
T Consensus       201 g~~~v~~s~~~h~s~~~~----~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~  276 (497)
T 2qma_A          201 DKLRIVCSKKSHFTVQKS----ASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD  276 (497)
T ss_dssp             GGEEEEEETTSCTHHHHH----HHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC
T ss_pred             CCeEEEECCCchHHHHHH----HHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC
Confidence            46 899999999888744    344443   78888875     899999988632    44  8888899999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcC-C----ccCC-CccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHh-
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLS-R----PLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-  151 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~-~----~~~~-~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~-  151 (307)
                      +++|.++|++||+++|+|++|+.+... .    .... ++|+++.|+||++++|.+  +|+++++++...+.+.....+ 
T Consensus       277 l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~--~G~l~~~~~~~~~~~~~~~~yl  354 (497)
T 2qma_A          277 LDFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTIS--CGALLVNDKSNFKFLLHHADYL  354 (497)
T ss_dssp             HHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSS--CEEEEESCGGGGGGGCC-----
T ss_pred             HHHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCcc--eEEEEEeCHHHHHHhcCCchhc
Confidence            999999999999999999999876653 2    1122 679999999999987766  899999876532222100000 


Q ss_pred             --c----CC----------CCChhhHHHHhhcc--ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHh
Q 021783          152 --E----GS----------GLAPFDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  213 (307)
Q Consensus       152 --~----~~----------~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~  213 (307)
                        .    ..          .......|..+..+  +.+....++..++++.+.+.+++.+++ .+..+            
T Consensus       355 ~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~-~~~~~------------  421 (497)
T 2qma_A          355 NREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQF-ELLAE------------  421 (497)
T ss_dssp             ---------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTE-EECSC------------
T ss_pred             CCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCe-EEEcC------------
Confidence              0    00          00112233333322  344556667777888888888765433 11111            


Q ss_pred             hhccCCCceEEEEeCCH-----HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEe-c
Q 021783          214 SQAKGAGSVLSFLTGSL-----ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV-G  287 (307)
Q Consensus       214 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~-~  287 (307)
                        +  ..++++|.+.+.     +....+.+.+...|+.+..+..                      . .+++++|+++ +
T Consensus       422 --~--~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~----------------------~-~g~~~lRis~~~  474 (497)
T 2qma_A          422 --P--SLSTVLFRATHETADLDELNKALRLEALTRGIAVLGETI----------------------V-DGKTALKFTILN  474 (497)
T ss_dssp             --C--SSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEE----------------------E-TTEEEEEEECCC
T ss_pred             --C--CceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeE----------------------E-CCEEEEEEEecC
Confidence              1  356888887542     1134555666666664432111                      0 0235799998 4


Q ss_pred             c----CChHHHHHHHHHHHhcC
Q 021783          288 I----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       288 ~----~~~~~~i~~l~~~l~~~  305 (307)
                      .    ++++++++.|.++++++
T Consensus       475 ~~~t~edi~~~~~~l~~~~~~~  496 (497)
T 2qma_A          475 PCLTTSDFESLLSKINMLAVEL  496 (497)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHhh
Confidence            3    66777777777766553

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.85  E-value=3.6e-21  Score=172.67  Aligned_cols=246  Identities=14%  Similarity=0.132  Sum_probs=167.3

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCC------ceEEEEeCCCCCccccccHHH
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPW------TKLVWVESPTNPRQQICDIRK   81 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~------~~~v~~~~~~n~tG~~~~~~~   81 (307)
                      ++++|++++.+|.++.    ..++..|++++.+|.+     |+++|+++++++      +.+|++++++|++|.+.|+++
T Consensus       187 ~~~~v~~s~~~H~s~~----~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~  262 (481)
T 4e1o_A          187 ARLVAYASDQAHSSVE----KAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSE  262 (481)
T ss_dssp             TTEEEEEETTSCHHHH----HHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHH
T ss_pred             CCeEEEEcCcchHHHH----HHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHH
Confidence            6789999999998887    4456679999999975     899999999732      678888899999999999999


Q ss_pred             HHHHHHHcCCEEEEeCccCCCCcCC----ccCCC---ccEEEeccccccccCCCceeEEEEEcChhHHHH-HHHHHHhc-
Q 021783           82 IAEMAHAHGALLLVDNSIMSPVLSR----PLELG---ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-LYFLQNAE-  152 (307)
Q Consensus        82 l~~~~~~~~~~li~D~a~~~~~~~~----~~~~~---~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~-~~~~~~~~-  152 (307)
                      |+++|++||+++++|++|+.+....    ....|   +|.++.++||++++|.|  +|+++++++..... +.....+. 
T Consensus       263 I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g--~g~l~~~~~~~l~~~~~~~~~yl~  340 (481)
T 4e1o_A          263 LGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFD--CTGFWVKDKYKLQQTFSVNPIYLR  340 (481)
T ss_dssp             HHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSS--CEEEEESBHHHHHTTTCCCCGGGC
T ss_pred             HHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCc--eEEEEEeCHHHHHHHhcCCchhcc
Confidence            9999999999999999998664321    11123   59999999999999988  89999987754321 10000000 


Q ss_pred             -----------------CCCCChhhHHHHhh--ccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHh
Q 021783          153 -----------------GSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  213 (307)
Q Consensus       153 -----------------~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~  213 (307)
                                       +........|..+.  +.+.+....++..++++.+.+.+++.+++.              +..
T Consensus       341 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~--------------~~~  406 (481)
T 4e1o_A          341 HANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFE--------------IPA  406 (481)
T ss_dssp             CTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEE--------------CCS
T ss_pred             CcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeE--------------Eec
Confidence                             00112233444333  334556677778888888888888765431              110


Q ss_pred             hhccCCCceEEEEeCC-HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----
Q 021783          214 SQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----  288 (307)
Q Consensus       214 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----  288 (307)
                         ....++++|.+.+ ......+.+.+...|+....+..         .              .+..++|+++..    
T Consensus       407 ---~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~---------~--------------~g~~~lR~~~~~~~tt  460 (481)
T 4e1o_A          407 ---KRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPAT---------I--------------QDKLIIRFTVTSQFTT  460 (481)
T ss_dssp             ---CCCSSEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEE---------E--------------TTEEEEEEECCCTTCC
T ss_pred             ---CCceeEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeE---------E--------------CCEEEEEEEeCCCCCC
Confidence               1135788898853 34467788887776642211110         0              023569999763    


Q ss_pred             -CChHHHHHHHHHHHhc
Q 021783          289 -EDVNDLISDLDKALRT  304 (307)
Q Consensus       289 -~~~~~~i~~l~~~l~~  304 (307)
                       +|++++++.|++.+++
T Consensus       461 ~~di~~~~~~i~~~~~~  477 (481)
T 4e1o_A          461 RDDILRDWNLIRDAATL  477 (481)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence             4667777777666543

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.85  E-value=1.2e-20  Score=166.92  Aligned_cols=253  Identities=13%  Similarity=0.137  Sum_probs=152.7

Q ss_pred             HhcCCCCeEEEcCCCCcchHHHHhhhcc-------cCCc---EEEEecCC----------ChHHHHhhcC-----CCceE
Q 021783            9 HLLGTGEEIVAGDDLYGGTDRLLSRVTP-------KTGV---VVKRVNTC----------DLDEVASAIG-----PWTKL   63 (307)
Q Consensus         9 ~~~~~gd~Vlv~~~~~~~~~~~~~~~~~-------~~g~---~~~~v~~~----------d~~~l~~~l~-----~~~~~   63 (307)
                      ++.++| +|++.+|.|++..........       .++.   .++.++.+          |++++++.++     +++++
T Consensus       124 ~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~  202 (426)
T 1sff_A          124 AATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAA  202 (426)
T ss_dssp             HHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEE
T ss_pred             HhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEE
Confidence            456776 899999999776532212211       1111   25555542          6788988885     46788


Q ss_pred             EEEeC-CCCCcccccc----HHHHHHHHHHcCCEEEEeCccCC-CCcC---CccCCCccEEEeccccccccCCCceeEEE
Q 021783           64 VWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS---RPLELGADIVMHSATKFIAGHSDVMAGVL  134 (307)
Q Consensus        64 v~~~~-~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~~-~~~~---~~~~~~~d~~~~s~~K~~~g~~g~~~G~~  134 (307)
                      |++++ ++| ||...+    +++|.++|++||+++|+|++|+. +...   .....+.+..+.|+||++ ++ |+|+|++
T Consensus       203 v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~s~sK~~-~~-GlriG~~  279 (426)
T 1sff_A          203 IVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSI-AG-GFPLAGV  279 (426)
T ss_dssp             EEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGG-GT-SSCCEEE
T ss_pred             EEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEEEEcccc-cC-CCceEEE
Confidence            88864 566 997776    99999999999999999999982 1111   112234333345899999 45 8999999


Q ss_pred             EEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHH
Q 021783          135 AVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  212 (307)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~  212 (307)
                      +++++ +.+.+...........++..+..+..+++.+..  ..+...++.+.+.+.++...       ..+   +.+.  
T Consensus       280 ~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~~---~~~~--  346 (426)
T 1sff_A          280 TGRAE-VMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIA-------EKH---PEIG--  346 (426)
T ss_dssp             EEEHH-HHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-------HTC---TTEE--
T ss_pred             EEcHH-HHhhhccCCcCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-------HhC---CCeE--
Confidence            99854 333322111112223445555555555544322  23344445555555554310       000   1000  


Q ss_pred             hhhccCCCceEEEEeC--------CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEE
Q 021783          213 YSQAKGAGSVLSFLTG--------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI  284 (307)
Q Consensus       213 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRi  284 (307)
                        ..++.+.++++.+.        +......+.+.|..+||.+++|..                         .++++|+
T Consensus       347 --~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~-------------------------~~~~iRi  399 (426)
T 1sff_A          347 --DVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGP-------------------------YYNVLRI  399 (426)
T ss_dssp             --EEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEEST-------------------------TSCEEEE
T ss_pred             --EEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCC-------------------------CCCEEEE
Confidence              00123678888884        233467788888888998876553                         1456999


Q ss_pred             Eecc----CChHHHHHHHHHHHhcC
Q 021783          285 SVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       285 s~~~----~~~~~~i~~l~~~l~~~  305 (307)
                      +++.    +++++.++.|.++++++
T Consensus       400 ~~~~~~~~~~i~~~~~~l~~~l~~~  424 (426)
T 1sff_A          400 LVPLTIEDAQIRQGLEIISQCFDEA  424 (426)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ECCccCCHHHHHHHHHHHHHHHHHH
Confidence            9863    67788888888777654

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.85  E-value=1.6e-21  Score=171.03  Aligned_cols=254  Identities=11%  Similarity=0.029  Sum_probs=151.9

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccC--CcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT--GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~--g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+ .++.+++++| .++++...|.....   ..+...  |++++.++.++-......+++++++|++++++||||.+.|+
T Consensus       109 al~~~~~~l~~~g-v~~v~~~~~~~~~~---~~~~~~~~g~~~~~v~~~~g~~~~~~i~~~~~~v~~~~~~nptG~~~~~  184 (398)
T 2fyf_A          109 FWDAAAFGLIDKR-SLHLTYGEFSAKFA---SAVSKNPFVGEPIIITSDPGSAPEPQTDPSVDVIAWAHNETSTGVAVAV  184 (398)
T ss_dssp             HHHHHHHHTCSSC-EEEEECSHHHHHHH---HHHHHCTTSCCCEEEECCTTCCCCCCCCTTCSEEEEESEETTTTEECCC
T ss_pred             HHHHHHHHhcCCC-eEEEeCCHHHHHHH---HHHHHhCCCCceEEEecCCCCCCCccccCCCCEEEEeCcCCCcceecch
Confidence            44 4555677887 23334444422111   122333  77777777642111112356789999999999999999998


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHH----------
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ----------  149 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~----------  149 (307)
                      ++|.++   +|+++|+|++|+.+..+.... +.|++++|+||++++++|  +|+++++++.+. .+....          
T Consensus       185 ~~i~~~---~~~~vivD~a~~~~~~~~~~~-~~di~~~s~sK~~~~~gg--~g~l~~~~~~~~-~l~~~~~~~~~~~~~~  257 (398)
T 2fyf_A          185 RRPEGS---DDALVVIDATSGAGGLPVDIA-ETDAYYFAPQKNFASDGG--LWLAIMSPAALS-RIEAIAATGRWVPDFL  257 (398)
T ss_dssp             CCCTTC---C-CEEEEECTTTTTTSCCCGG-GCSEEEECTTSTTCSCSS--EEEEEECHHHHH-HHHHHHHTTCCCCGGG
T ss_pred             HHhhhh---cCCeEEEEeccccCCcccCcc-cCcEEEEecCcccCCCCc--eEEEEECHHHHH-HhhcccccCCCCCcEE
Confidence            888887   899999999999876552222 489999999999965434  899998865443 332110          


Q ss_pred             ------H-----hcCCCCChhhHHHHhhcccc------HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHH
Q 021783          150 ------N-----AEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  212 (307)
Q Consensus       150 ------~-----~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~  212 (307)
                            .     ....+.+......+..+++.      ++...++..++++.+.+.|++.+++ .+..+           
T Consensus       258 ~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~~-----------  325 (398)
T 2fyf_A          258 SLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYT-TPFVT-----------  325 (398)
T ss_dssp             CHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTE-EESCC-----------
T ss_pred             ehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCc-eeccC-----------
Confidence                  0     01112222333333333332      3444555666777777777765432 11100           


Q ss_pred             hhhccCCCc-eEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc---
Q 021783          213 YSQAKGAGS-VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---  288 (307)
Q Consensus       213 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---  288 (307)
                        .+...++ ++++.++...+..++.+.|..+||.++.|..                       ..+++++|||++.   
T Consensus       326 --~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~-----------------------~~~~~~iRis~~~~~t  380 (398)
T 2fyf_A          326 --DPGLRSQVVGTIDFVDDVDAGTVAKILRANGIVDTEPYR-----------------------KLGRNQLRVAMFPAVE  380 (398)
T ss_dssp             --SGGGBCSSEEEEEECTTSCHHHHHHHHHHTTCBCCSCCT-----------------------TTCSSEEEEECCTTSC
T ss_pred             --ChhhcCCcEEEEECCCCCCHHHHHHHHHHCCcEEecCcc-----------------------cCCCCEEEEEecCCCC
Confidence              0111234 8888885322367788888888998876521                       0125679999984   


Q ss_pred             -CChHHHHHHHHHHHhc
Q 021783          289 -EDVNDLISDLDKALRT  304 (307)
Q Consensus       289 -~~~~~~i~~l~~~l~~  304 (307)
                       ++++++++.|++++++
T Consensus       381 ~e~i~~~~~~l~~~l~~  397 (398)
T 2fyf_A          381 PDDVSALTECVDWVVER  397 (398)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence             5677777777776654

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.85  E-value=2e-20  Score=165.01  Aligned_cols=259  Identities=21%  Similarity=0.210  Sum_probs=153.4

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCC--cEEEEecC-----CChHHHHhhcCC-CceEEEEeCCCCCcccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG--VVVKRVNT-----CDLDEVASAIGP-WTKLVWVESPTNPRQQI   76 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g--~~~~~v~~-----~d~~~l~~~l~~-~~~~v~~~~~~n~tG~~   76 (307)
                      .++.+++++||+|+++.++|+++...... ....|  ...+.++.     .|++++++++++ ++++|++++|+||  ..
T Consensus       107 ~a~~~~~~~gd~v~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~--~~  183 (420)
T 3gbx_A          107 AVYTALLQPGDTVLGMNLAQGGHLTHGSP-VNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAYS--GV  183 (420)
T ss_dssp             HHHHHHCCTTCEEEEEEEC-------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECCTTCC--SC
T ss_pred             HHHHHhcCCCCEEEecchhhcceeccchh-hhhcccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEecCccC--Cc
Confidence            45567889999999999999774321111 11223  34444432     489999999975 6899999888885  47


Q ss_pred             ccHHHHHHHHHHcCCEEEEeCccCCCCc-----CCccCCCccEEEeccccccccCCCceeEEEEEcC--hhHHHHHHHHH
Q 021783           77 CDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG--ERLAKELYFLQ  149 (307)
Q Consensus        77 ~~~~~l~~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~--~~~~~~~~~~~  149 (307)
                      .++++|.++|++||+++|+|++|+.+..     +.... ..|++++|+||+++|+.   +|++++++  +.+.+.+....
T Consensus       184 ~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~-~~di~~~s~sK~~~g~~---gg~~~~~~~~~~~~~~~~~~~  259 (420)
T 3gbx_A          184 VDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP-HAHVVTTTTHKTLAGPR---GGLILAKGGDEELYKKLNSAV  259 (420)
T ss_dssp             CCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT-TSSEEEEESSGGGCSCS---CEEEEESSCCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccc-cCCEEEeecccCCCCCC---ceEEEEcCCcHHHHHHhhhhc
Confidence            8899999999999999999999864432     22222 48999999999997655   69999987  24544443322


Q ss_pred             Hhc-CCCCChh---hHHHHh-hcc-ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceE
Q 021783          150 NAE-GSGLAPF---DCWICL-RGV-KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  223 (307)
Q Consensus       150 ~~~-~~~~~~~---~~~~~~-~~l-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  223 (307)
                      ... .+.....   ...... ..+ +.+....++..++.+.+.+.|++.. + .             +..  +...++++
T Consensus       260 ~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-~-------------~~~--~~~~~~~~  322 (420)
T 3gbx_A          260 FPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRG-Y-K-------------VVS--GGTENHLF  322 (420)
T ss_dssp             C----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-C-E-------------EGG--GSCSSSEE
T ss_pred             CCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC-C-e-------------ecc--CCCCCeEE
Confidence            211 1122111   111111 111 2334556666777777777776521 1 1             110  01245677


Q ss_pred             EEEeCCH-HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--------CChHHH
Q 021783          224 SFLTGSL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--------EDVNDL  294 (307)
Q Consensus       224 ~~~~~~~-~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--------~~~~~~  294 (307)
                      ++.+.+. .....+.+.+.++||.++.+..      |....           ....++.+|++++.        ++++++
T Consensus       323 ~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~------~~~~~-----------~~~~~~~iRi~~~~~~~~~~~~~~i~~~  385 (420)
T 3gbx_A          323 LLDLVDKNLTGKEADAALGRANITVNKNSV------PNDPK-----------SPFVTSGIRIGSPAVTRRGFKEAEVKEL  385 (420)
T ss_dssp             EEECGGGTCCHHHHHHHHHHTTEECEEECC------TTCSS-----------CTTTCSEEEEECHHHHHTTCCHHHHHHH
T ss_pred             EEEcCCCCCCHHHHHHHHHHCCcEeccccC------CCCcc-----------ccCCCcceEEecchhcccCCCHHHHHHH
Confidence            7776431 2356667777778898766221      10000           00123459999962        567777


Q ss_pred             HHHHHHHHhc
Q 021783          295 ISDLDKALRT  304 (307)
Q Consensus       295 i~~l~~~l~~  304 (307)
                      ++.|.+++++
T Consensus       386 ~~~l~~~l~~  395 (420)
T 3gbx_A          386 AGWMCDVLDN  395 (420)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhC
Confidence            7777777654

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.85  E-value=3.4e-20  Score=164.57  Aligned_cols=245  Identities=13%  Similarity=0.120  Sum_probs=155.5

Q ss_pred             CCC-CeEEEcCCCCcchHHHHhhhcc---------cCCcEEEEecCCChHHHHhhcC-CCceEEEEeCCCCCccccc---
Q 021783           12 GTG-EEIVAGDDLYGGTDRLLSRVTP---------KTGVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQIC---   77 (307)
Q Consensus        12 ~~g-d~Vlv~~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~---   77 (307)
                      .+| |+|++.++.|.+..........         .....++.+|.+|++++++.++ +++++|++++.++++|.+.   
T Consensus       164 ~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~  243 (439)
T 2oat_A          164 QKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDP  243 (439)
T ss_dssp             CTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSSCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCT
T ss_pred             CCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCH
Confidence            467 8999999998765432111111         0115677888889999999994 7888999888888899876   


Q ss_pred             -cHHHHHHHHHHcCCEEEEeCccC-CCCcCC---ccCC--CccEEEeccccccccCCC-ceeEEEEEcChhHHHHHHHHH
Q 021783           78 -DIRKIAEMAHAHGALLLVDNSIM-SPVLSR---PLEL--GADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        78 -~~~~l~~~~~~~~~~li~D~a~~-~~~~~~---~~~~--~~d~~~~s~~K~~~g~~g-~~~G~~~~~~~~~~~~~~~~~  149 (307)
                       ++++|.++|++||+++|+|++|. .+....   ...+  ..|++  |++|++++  | +++|+++++++ +.+.+....
T Consensus       244 ~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~--G~~~~G~v~~~~~-~~~~l~~~~  318 (439)
T 2oat_A          244 GYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALSG--GLYPVSAVLCDDD-IMLTIKPGE  318 (439)
T ss_dssp             THHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT--TSSCCEEEEECHH-HHTTSCTTS
T ss_pred             HHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcEE--EecccccC--CCCCeEEEEECHH-HHhccCCCC
Confidence             79999999999999999999995 221111   1222  35665  88999953  6 78999999854 433332211


Q ss_pred             HhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEe
Q 021783          150 NAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  227 (307)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  227 (307)
                      .......++..+..+.+.++.+..  ..++..++.+.+.+.|++..            .+.   .. ..++.+.++++.+
T Consensus       319 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~------------~~~---~~-~~~~~g~~~~v~l  382 (439)
T 2oat_A          319 HGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLP------------SDV---VT-AVRGKGLLNAIVI  382 (439)
T ss_dssp             SCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSC------------TTT---EE-EEEEETTEEEEEE
T ss_pred             cccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhc------------CCC---cE-EEEeeeeEEEEEE
Confidence            112223445556665556654432  23334444455555554321            110   00 1123577888888


Q ss_pred             CCH--HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHH
Q 021783          228 GSL--ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKA  301 (307)
Q Consensus       228 ~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~  301 (307)
                      .+.  .....+.+.|.++||.++++.                           ++++|++++.    +++++.++.|.++
T Consensus       383 ~~~~~~~~~~l~~~l~~~Gv~v~~~~---------------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~  435 (439)
T 2oat_A          383 KETKDWDAWKVCLRLRDNGLLAKPTH---------------------------GDIIRFAPPLVIKEDELRESIEIINKT  435 (439)
T ss_dssp             CCCSSCCHHHHHHHHHHTTEECCBSS---------------------------SSEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             ecCccHHHHHHHHHHHHCCeEEecCC---------------------------CCEEEEECccCCCHHHHHHHHHHHHHH
Confidence            543  235678888878899876521                           3469998864    6777777777777


Q ss_pred             Hhc
Q 021783          302 LRT  304 (307)
Q Consensus       302 l~~  304 (307)
                      +++
T Consensus       436 l~~  438 (439)
T 2oat_A          436 ILS  438 (439)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            654

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.84  E-value=5.4e-21  Score=165.79  Aligned_cols=249  Identities=13%  Similarity=0.029  Sum_probs=157.4

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC--------ChHHHHhhcCCCceEEEEeCCCCCc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--------DLDEVASAIGPWTKLVWVESPTNPR   73 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--------d~~~l~~~l~~~~~~v~~~~~~n~t   73 (307)
                      ++ .++..++++||+|++...++.+.  .|...++..| +++.++.+        ++++++++++++|++|++++.+|.|
T Consensus       103 a~n~ai~~l~~~gd~v~~~~~~~~~~--~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~t  179 (386)
T 3qm2_A          103 QFAGVPLNLLGDKTTADYVDAGYWAA--SAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETID  179 (386)
T ss_dssp             HHHHHHHHHCTTCCEEEEEESSHHHH--HHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTT
T ss_pred             HHHHHHHhccCCCCeEEEEeCCHHHH--HHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCc
Confidence            44 45566789999987666555444  4556678888 88877654        4577888888999999999999999


Q ss_pred             ccc-ccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHH-------H
Q 021783           74 QQI-CDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-------E  144 (307)
Q Consensus        74 G~~-~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~-------~  144 (307)
                      |.+ .|+++|.     +|+++++|++|+.|..+ +..+++  ++++|.||++ ||+|  .|+++++++.+.+       .
T Consensus       180 G~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~l-GP~G--~g~l~v~~~~~~~~~~~~p~~  249 (386)
T 3qm2_A          180 GIAIDETPDFG-----PEVVVTADFSSTILSAPLDVSRYG--VIYAGAQKNI-GPAG--LTLVIVREDLLGKAHESCPSI  249 (386)
T ss_dssp             TEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGGCS--EEEEETTTTT-CCTT--EEEEEEEGGGCSCCCTTSCGG
T ss_pred             CEecCchhhhc-----CCCEEEEEcccccCCCCCCccccC--EEEEeccccc-CCCc--cEEEEECHHHHhhhcccCCcH
Confidence            996 7888875     79999999999999988 777776  5779999999 7999  9999999765211       0


Q ss_pred             --HHHH-HHh-cCCCCChhhHHHHhhccccH------HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhh
Q 021783          145 --LYFL-QNA-EGSGLAPFDCWICLRGVKTM------ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS  214 (307)
Q Consensus       145 --~~~~-~~~-~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~  214 (307)
                        .... ... ...+++....+....+++.+      +...++..+.++.+.+.+++.. +  +....           .
T Consensus       250 ~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~-~--~~~~~-----------~  315 (386)
T 3qm2_A          250 LDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSD-F--YRNDV-----------A  315 (386)
T ss_dssp             GCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCS-S--EECCB-----------C
T ss_pred             HHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCC-C--cccCC-----------C
Confidence              0001 000 01122222233333333322      2233334444555555555431 1  00000           0


Q ss_pred             hccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHH
Q 021783          215 QAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL  294 (307)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~  294 (307)
                      +......+++|.+++......++..|..+||.++.|...                         .+.+|+|++....++.
T Consensus       316 ~~~rs~~iv~f~~~~~~~~~~~~~~L~~~gI~~~~g~~~-------------------------~~~iRiS~~~~~t~ed  370 (386)
T 3qm2_A          316 QANRSRMNVPFQLADNTLDKVFLEESFAAGLHALKGHRV-------------------------VGGMRASIYNAMPIEG  370 (386)
T ss_dssp             GGGBCSSEEEEEESSGGGHHHHHHHHHHTTEECCBCCTT-------------------------TCSEEEECCTTSCHHH
T ss_pred             HHHcCceEEEEECCCccccHHHHHHHHHCCCEEeCCCCC-------------------------cCeEEEEcCCCCCHHH
Confidence            001124688999975322257777788889988776531                         1239999987555555


Q ss_pred             HHHHHHHHh
Q 021783          295 ISDLDKALR  303 (307)
Q Consensus       295 i~~l~~~l~  303 (307)
                      ++.|.++|+
T Consensus       371 Id~l~~~l~  379 (386)
T 3qm2_A          371 VKALTDFMI  379 (386)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555554

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.84  E-value=6.1e-21  Score=167.25  Aligned_cols=153  Identities=13%  Similarity=0.037  Sum_probs=108.0

Q ss_pred             hcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEE-EecC-------CChHHHHhhc---CCCceEEEEeCCCCCcccccc
Q 021783           10 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK-RVNT-------CDLDEVASAI---GPWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus        10 ~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~-~v~~-------~d~~~l~~~l---~~~~~~v~~~~~~n~tG~~~~   78 (307)
                      +.+|||+|++++|+|+++.    ..++..|.+.+ ..+.       .|.+.+.+.+   .+++++++.++|+||||..++
T Consensus       133 ~~~pgd~V~ip~P~w~~y~----~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~  208 (420)
T 4h51_A          133 FDAETTPIYLSDPTWPNHY----GVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPS  208 (420)
T ss_dssp             SCTTTSCEEEEESCCTHHH----HHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCC
T ss_pred             cCCCCCEEEEecCCchhHH----HHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCC
Confidence            5689999999999999888    55667787633 3332       1666666655   367888888899999999985


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCccCCCCcCC-----------ccCCCccEEEeccccccccCCCceeEEEEEcChhHHHH
Q 021783           79 ---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  144 (307)
Q Consensus        79 ---~~~l~~~~~~~~~~li~D~a~~~~~~~~-----------~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~  144 (307)
                         +++|+++|+++++++++|++|..-...+           .......+++.||||.+ +.+|.|+|++.+..+.....
T Consensus       209 ~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RvG~~~~~~~~~~~~  287 (420)
T 4h51_A          209 QEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNM-GLYSERAGTLSLLLKDKTKR  287 (420)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS-CCGGGCEEEEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEecccccc-ccccCceEEEEecccCHHHH
Confidence               8899999999999999999996432211           11224578999999999 78899999999876543322


Q ss_pred             ------HHHHHHhcCCCCChhhHHHHhhc
Q 021783          145 ------LYFLQNAEGSGLAPFDCWICLRG  167 (307)
Q Consensus       145 ------~~~~~~~~~~~~~~~~~~~~~~~  167 (307)
                            +....+...+..+...+......
T Consensus       288 ~~~~~~l~~~~r~~~s~~p~~~a~~~~~~  316 (420)
T 4h51_A          288 ADVKSVMDSLIREEYTCPPAHGARLAHLI  316 (420)
T ss_dssp             HHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhcccCcchHHHHHHHHHH
Confidence                  22233334444444444444433

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.84  E-value=2.1e-20  Score=165.61  Aligned_cols=244  Identities=11%  Similarity=0.109  Sum_probs=150.0

Q ss_pred             CCC-CeEEEcCCCCcchHHHHhhhcccCC------------cEEEEecCCChHHHHhhc-CCCceEEEEeCCCCCccccc
Q 021783           12 GTG-EEIVAGDDLYGGTDRLLSRVTPKTG------------VVVKRVNTCDLDEVASAI-GPWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus        12 ~~g-d~Vlv~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~d~~~l~~~l-~~~~~~v~~~~~~n~tG~~~   77 (307)
                      ++| |+|++.+++|.+.....   ....|            ..++.+|.+|++++++.+ ++++++|+++++++++|.+.
T Consensus       153 ~~gr~~vi~~~~~yhg~~~~~---~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~  229 (433)
T 1z7d_A          153 PENMAKIVVCKNNFSGRTLGC---ISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIV  229 (433)
T ss_dssp             CTTCCEEEEETTC-----------------------------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBC
T ss_pred             CCCCCeEEEEeCCcCCcchhh---hcccCCccccccCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCccC
Confidence            467 99999999987654221   11112            456778888999999999 57889999888888899876


Q ss_pred             ----cHHHHHHHHHHcCCEEEEeCccC-CCCcCC---ccCC--CccEEEeccccccccCCC-ceeEEEEEcChhHHHHHH
Q 021783           78 ----DIRKIAEMAHAHGALLLVDNSIM-SPVLSR---PLEL--GADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELY  146 (307)
Q Consensus        78 ----~~~~l~~~~~~~~~~li~D~a~~-~~~~~~---~~~~--~~d~~~~s~~K~~~g~~g-~~~G~~~~~~~~~~~~~~  146 (307)
                          ++++|.++|++||+++|+|++|+ .+....   ...+  ..|++  |++|+++  +| +++|+++++++ +.+.+.
T Consensus       230 ~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~--~G~~~~G~v~~~~~-~~~~l~  304 (433)
T 1z7d_A          230 PSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVI--LLGKALS--GGHYPISAVLANDD-IMLVIK  304 (433)
T ss_dssp             CCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGG--TTSSCCEEEEECHH-HHTTCC
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCEE--EECcccc--CCCCCeEEEEECHH-HHhhhc
Confidence                69999999999999999999996 221111   1222  35665  7899995  47 78999999854 433322


Q ss_pred             HHHHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEE
Q 021783          147 FLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  224 (307)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  224 (307)
                      ..........++..+..+.+.++.+..  ..++..++.+.+.+.+++..       .+   .+.+    ...++.+.+++
T Consensus       305 ~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~-------~~---~~~~----~~~~~~g~~~~  370 (433)
T 1z7d_A          305 PGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKREL-------KD---SKIV----RDVRGKGLLCA  370 (433)
T ss_dssp             TTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-------TT---CTTE----EEEEEETTEEE
T ss_pred             cccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-------Hh---CCCe----EEEEeeeeEEE
Confidence            111112223445556555555554432  23344444555555554320       01   1100    01123577888


Q ss_pred             EEeCCH-HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHH
Q 021783          225 FLTGSL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLD  299 (307)
Q Consensus       225 ~~~~~~-~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~  299 (307)
                      +.+.+. .....+.+.|.++||.++++.                           ++++|++++.    +++++.++.|.
T Consensus       371 i~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------------------~~~iRi~~~~~~t~e~i~~~l~~l~  423 (433)
T 1z7d_A          371 IEFKNELVNVLDICLKLKENGLITRDVH---------------------------DKTIRLTPPLCITKEQLDECTEIIV  423 (433)
T ss_dssp             EEECTTTCCHHHHHHHHHHTTEECCEET---------------------------TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             EEEccChhHHHHHHHHHHHCCeEEecCC---------------------------CCEEEEECCcCCCHHHHHHHHHHHH
Confidence            888643 236678888878899776521                           3469998864    67777777777


Q ss_pred             HHHhc
Q 021783          300 KALRT  304 (307)
Q Consensus       300 ~~l~~  304 (307)
                      +++++
T Consensus       424 ~~l~~  428 (433)
T 1z7d_A          424 KTVKF  428 (433)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.84  E-value=1.5e-20  Score=170.17  Aligned_cols=118  Identities=20%  Similarity=0.190  Sum_probs=99.7

Q ss_pred             eEEEcCCCCcchHHHHhhhcccCCc---EEEEecCC-----ChHHHHhhcCC------CceEEEEeCCCCCccccccHHH
Q 021783           16 EIVAGDDLYGGTDRLLSRVTPKTGV---VVKRVNTC-----DLDEVASAIGP------WTKLVWVESPTNPRQQICDIRK   81 (307)
Q Consensus        16 ~Vlv~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~-----d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~~~~   81 (307)
                      +|+++++.|+++...    ++..|.   +++.+|.+     |+++|++++++      ++++|++++++|+||.+.|+++
T Consensus       205 ~vl~s~~~h~s~~~~----~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~  280 (515)
T 2jis_A          205 ALFTSKECHYSIQKG----AAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEA  280 (515)
T ss_dssp             EEEEETTSCTHHHHH----HHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHH
T ss_pred             EEEECCCccHHHHHH----HHHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHH
Confidence            899999999988844    444455   88888874     89999999864      5899999999999999999999


Q ss_pred             HHHHHHHcCCEEEEeCccCCCCcCC------ccCC-CccEEEeccccccccCCCceeEEEEEcCh
Q 021783           82 IAEMAHAHGALLLVDNSIMSPVLSR------PLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        82 l~~~~~~~~~~li~D~a~~~~~~~~------~~~~-~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      |.++|++||+++|+|++|+.+....      .... ++|++++|+||++++|.|  +|+++++++
T Consensus       281 I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g--~G~l~~~~~  343 (515)
T 2jis_A          281 IADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQ--CSALLLQDT  343 (515)
T ss_dssp             HHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSC--CEEEEESCC
T ss_pred             HHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCC--eeEEEEeCh
Confidence            9999999999999999998766542      2222 789999999999977777  899999877

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.84  E-value=8.3e-20  Score=161.22  Aligned_cols=238  Identities=12%  Similarity=0.056  Sum_probs=148.4

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhc----------ccCCcEEEEecCC---------------------ChHHHH-hhcC--
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVT----------PKTGVVVKRVNTC---------------------DLDEVA-SAIG--   58 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~----------~~~g~~~~~v~~~---------------------d~~~l~-~~l~--   58 (307)
                      +||+|++++|.|++.........          ...+..++.++.+                     |+++++ +.++  
T Consensus       128 ~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~  207 (419)
T 2eo5_A          128 GRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNL  207 (419)
T ss_dssp             SCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHT
T ss_pred             hCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhc
Confidence            39999999999976543322111          1112345666653                     257888 8775  


Q ss_pred             ---CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCcCC---ccCC--CccEEEecccccccc
Q 021783           59 ---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR---PLEL--GADIVMHSATKFIAG  125 (307)
Q Consensus        59 ---~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~~~---~~~~--~~d~~~~s~~K~~~g  125 (307)
                         +++++|+++..+||||...+    +++|.++|++||+++|+|++|+ .+....   ....  ..|++  |+||.++ 
T Consensus       208 ~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~-  284 (419)
T 2eo5_A          208 VPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVI--TLAKALG-  284 (419)
T ss_dssp             CCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGG-
T ss_pred             cCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEE--Eeccccc-
Confidence               45677777666778998765    9999999999999999999997 332211   1222  34544  7999995 


Q ss_pred             CCC-ceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCC
Q 021783          126 HSD-VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP  204 (307)
Q Consensus       126 ~~g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~  204 (307)
                      . | +++|+++++++..  .+ ..........++..+..+.++++.+....+...++.+.+.+.|++.  +.        
T Consensus       285 ~-G~~riG~~~~~~~~~--~~-~~~~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~l~~~L~~~--~~--------  350 (419)
T 2eo5_A          285 G-GIMPIGATIFRKDLD--FK-PGMHSNTFGGNALACAIGSKVIDIVKDLLPHVNEIGKIFAEELQGL--AD--------  350 (419)
T ss_dssp             T-TTSCCEEEEEEGGGC--CC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SS--------
T ss_pred             C-CccceEEEEEchHhh--cC-CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh--------
Confidence            3 7 8899999987644  33 2112222334556666666666554433444455555555555432  00        


Q ss_pred             CCCchHHHhhhccCCCceEEEEeCC-HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEE
Q 021783          205 EHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVR  283 (307)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iR  283 (307)
                                ..++.+.++++.+.+ ..... +.+.|.++||.++.++                           ++++|
T Consensus       351 ----------~~~~~g~~~~i~~~~~~~~~~-~~~~l~~~Gv~v~~~~---------------------------~~~lR  392 (419)
T 2eo5_A          351 ----------DVRGIGLAWGLEYNEKKVRDR-IIGESFKRGLLLLPAG---------------------------RSAIR  392 (419)
T ss_dssp             ----------EEEEETTEEEEECSCHHHHHH-HHHHHHHTTEECEEET---------------------------TTEEE
T ss_pred             ----------heEeeeEEEEEEEecCccHHH-HHHHHHHCCCEEecCC---------------------------CCEEE
Confidence                      012246788888843 23355 7777878899776532                           34599


Q ss_pred             EEecc----CChHHHHHHHHHHHhcC
Q 021783          284 ISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       284 is~~~----~~~~~~i~~l~~~l~~~  305 (307)
                      |+++.    +++++.++.|.++++++
T Consensus       393 is~~~~~t~e~i~~~l~~l~~~l~~~  418 (419)
T 2eo5_A          393 VIPPLVISEEEAKQGLDILKKVIKVV  418 (419)
T ss_dssp             ECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            98764    67777888887777653

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.83  E-value=7.3e-20  Score=171.47  Aligned_cols=180  Identities=13%  Similarity=0.067  Sum_probs=126.3

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC---------------ChHHHHhhcC--CCce-----
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---------------DLDEVASAIG--PWTK-----   62 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---------------d~~~l~~~l~--~~~~-----   62 (307)
                      +++.++++|||+|+++.++|.++...    +...|+++++++..               |+++++++++  ++++     
T Consensus       236 ~~i~al~~~GD~Vlv~~~~h~s~~~~----~~~~G~~~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~  311 (755)
T 2vyc_A          236 TIMQACMTDNDVVVVDRNCHKSIEQG----LMLTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQ  311 (755)
T ss_dssp             HHHHHHCCTTCEEEEESSCCHHHHHH----HHHHCCEEEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTC
T ss_pred             HHHHHhcCCCCEEEECCCchHHHHHH----HHHcCCEEEEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccC
Confidence            56777899999999999999988844    55679999998752               7899999885  3454     


Q ss_pred             ---EEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCccCCCCcC-------CccCCC--ccE------EEeccccccc
Q 021783           63 ---LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-------RPLELG--ADI------VMHSATKFIA  124 (307)
Q Consensus        63 ---~v~~~~~~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-------~~~~~~--~d~------~~~s~~K~~~  124 (307)
                         +++++++ |++|.+.|+++|+++|++||+++++|++|+.+...       ... .+  +|+      +++|+||+++
T Consensus       312 ~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~  389 (755)
T 2vyc_A          312 KPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLLN  389 (755)
T ss_dssp             CCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSSS
T ss_pred             CCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhcccCcccCCcchh-cCCcCCccCCCeEEEECcccccc
Confidence               8999998 68999999999999999999999999999753211       111 45  565      9999999998


Q ss_pred             cCCCceeEEEEEcCh--hH-HHHHHHH-HHhcCCCCChhhHHHHhhccc---c--HHHHHHHHHHHHHHHHHHHhcC
Q 021783          125 GHSDVMAGVLAVKGE--RL-AKELYFL-QNAEGSGLAPFDCWICLRGVK---T--MALRVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       125 g~~g~~~G~~~~~~~--~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~---~--~~~~~~~~~~~~~~l~~~l~~~  192 (307)
                      |+++  +|+++++++  .+ ...+... .....++++.........+++   .  ...++++..++++.+++.+++.
T Consensus       390 g~~~--g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l  464 (755)
T 2vyc_A          390 ALSQ--ASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARL  464 (755)
T ss_dssp             CCTT--CEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCC--eeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            8876  888888765  22 2223222 222222333222222222222   1  3456677777888888877654

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.83  E-value=2.2e-19  Score=160.05  Aligned_cols=259  Identities=16%  Similarity=0.155  Sum_probs=150.6

Q ss_pred             HHHHHHhcCCCCeEEEcCCCCcchHHHHh----hhcccCCcE--EEEecC------CChHHHHhhcC-CCceEEEEeCCC
Q 021783            4 LAAVTHLLGTGEEIVAGDDLYGGTDRLLS----RVTPKTGVV--VKRVNT------CDLDEVASAIG-PWTKLVWVESPT   70 (307)
Q Consensus         4 l~~~~~~~~~gd~Vlv~~~~~~~~~~~~~----~~~~~~g~~--~~~v~~------~d~~~l~~~l~-~~~~~v~~~~~~   70 (307)
                      .+++.++++|||+|+++++.|.++.....    ..+...|..  ++.++.      .|++++++.+. .++++|+++.++
T Consensus       134 ~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~  213 (490)
T 2a7v_A          134 LAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSA  213 (490)
T ss_dssp             HHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSS
T ss_pred             HHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCCC
Confidence            36777899999999999999865431100    012334543  333332      38999999886 478889888777


Q ss_pred             CCccccccHHHHHHHHHHcCCEEEEeCccCCC-----CcCCccCCCccEEEeccccccccCCCceeEEEEEcCh------
Q 021783           71 NPRQQICDIRKIAEMAHAHGALLLVDNSIMSP-----VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE------  139 (307)
Q Consensus        71 n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~-----~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~------  139 (307)
                      ||  ...|+++|.++|++||+++++|++|..|     ..+.+.. ++|++++|+||+++||.   +|+++++++      
T Consensus       214 ~~--~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~-~aDiv~~S~hK~l~Gp~---GG~i~~~~~~~~~~~  287 (490)
T 2a7v_A          214 YA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK-HADIVTTTTHKTLRGAR---SGLIFYRKGVKAVDP  287 (490)
T ss_dssp             CC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGCSCS---CEEEEEECSEEEEET
T ss_pred             CC--CcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC-CCCEEEECCcccCcccc---chheeeccchhcccc
Confidence            75  5679999999999999999999998643     2233333 68999999999997765   699999874      


Q ss_pred             --------hHHHHHHHHHHhcC-CCCChhhHHHHhhcc-----ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCC
Q 021783          140 --------RLAKELYFLQNAEG-SGLAPFDCWICLRGV-----KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE  205 (307)
Q Consensus       140 --------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~  205 (307)
                              .+.+.+........ +++..........++     +.+..+.++..++++.+.+.|++.. + .+...    
T Consensus       288 ~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G-~-~v~~~----  361 (490)
T 2a7v_A          288 KTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERG-Y-SLVSG----  361 (490)
T ss_dssp             TTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT-C-EEGGG----
T ss_pred             cccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcC-c-EEecC----
Confidence                    23444443322111 122221111111121     2345567788889999999988642 1 11110    


Q ss_pred             CCchHHHhhhccCCCceEEEEeCCHH-HHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEE
Q 021783          206 HPGHELHYSQAKGAGSVLSFLTGSLA-LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI  284 (307)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRi  284 (307)
                                 .....++++.+.+.. ....+.+.|.+.||.++.+..+.- ..|                 ...+.+||
T Consensus       362 -----------~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d-~~p-----------------~~~~~iRi  412 (490)
T 2a7v_A          362 -----------GTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGD-RSA-----------------ITPGGLRL  412 (490)
T ss_dssp             -----------SCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTC-CCS-----------------SSCSEEEE
T ss_pred             -----------CCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCC-CCC-----------------CCCCceEe
Confidence                       112457777774321 356677777778998875432110 011                 12456999


Q ss_pred             Eec--------cCChHHHHHHHHHHHh
Q 021783          285 SVG--------IEDVNDLISDLDKALR  303 (307)
Q Consensus       285 s~~--------~~~~~~~i~~l~~~l~  303 (307)
                      +..        .+|++++++.+.++++
T Consensus       413 g~~a~t~~g~~~~d~~~~~~~i~~~l~  439 (490)
T 2a7v_A          413 GAPALTSRQFREDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             ESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCCCHHHHHHHHHHHHHHHH
Confidence            773        2677777777777664

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.83  E-value=2.9e-19  Score=159.04  Aligned_cols=263  Identities=19%  Similarity=0.140  Sum_probs=156.6

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhccc--CCcEEEEecC------CChHHHHhhcC-CCceEEEEeCCCCCccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK--TGVVVKRVNT------CDLDEVASAIG-PWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~--~g~~~~~v~~------~d~~~l~~~l~-~~~~~v~~~~~~n~tG~   75 (307)
                      .++.++++|||+|++++++|.++.... .....  .+..++.++.      .|++++++.+. .+++++++++++||++.
T Consensus       122 ~a~~~~~~~Gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~  200 (447)
T 3h7f_A          122 AVLHALMSPGERLLGLDLANGGHLTHG-MRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVL  200 (447)
T ss_dssp             HHHHHHCCTTCEEEEECGGGTCCGGGT-CTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSCCSCC
T ss_pred             HHHHHhcCCCCEEEecCcccccccchh-hhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCCCCCcc
Confidence            566678999999999999997732100 00111  2345555553      38999999985 57889999889998776


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCccCCCC-----cCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHH
Q 021783           76 ICDIRKIAEMAHAHGALLLVDNSIMSPV-----LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  150 (307)
Q Consensus        76 ~~~~~~l~~~~~~~~~~li~D~a~~~~~-----~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~  150 (307)
                        ++++|.++|++||+++|+|++|..+.     .+... .++|++++|+||+++|+.   +|+++++++ +.+.+.....
T Consensus       201 --~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G~~---gG~i~~~~~-~~~~l~~~~~  273 (447)
T 3h7f_A          201 --DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGGGR---SGLIVGKQQ-YAKAINSAVF  273 (447)
T ss_dssp             --CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCCCS---CEEEEECGG-GHHHHHHHHT
T ss_pred             --CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCCCC---eEEEEECHH-HHHHHhhhcC
Confidence              99999999999999999999986432     22222 257999999999996654   799998864 4444433322


Q ss_pred             hc-CCCCChh-hHH--HHhh-ccc-cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEE
Q 021783          151 AE-GSGLAPF-DCW--ICLR-GVK-TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  224 (307)
Q Consensus       151 ~~-~~~~~~~-~~~--~~~~-~l~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  224 (307)
                      .. .++.... ...  .+.. ..+ .+....++..++.+.+.+.|++...    ..+++      .+...  ...+.+++
T Consensus       274 ~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~~~g~------~~~~~--~~~~~~~~  341 (447)
T 3h7f_A          274 PGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDV----AKAGV------SVVSG--GTDVHLVL  341 (447)
T ss_dssp             TTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHH----HHTTC------EEGGG--SCSSSEEE
T ss_pred             CcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccc----cCCCe------EEecC--CCCCCEEE
Confidence            21 1222211 111  1111 112 4455667778888888888865300    00011      11110  11345666


Q ss_pred             EEeCCH-HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec--------cCChHHHH
Q 021783          225 FLTGSL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--------IEDVNDLI  295 (307)
Q Consensus       225 ~~~~~~-~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~--------~~~~~~~i  295 (307)
                      +.+.+. .....+.+.+...||.++..........                 ...++.+|+++.        .+++++++
T Consensus       342 ~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~-----------------p~~~~~lRig~~~~~~~~~~~eei~~~~  404 (447)
T 3h7f_A          342 VDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRP-----------------PMVTSGLRIGTPALATRGFGDTEFTEVA  404 (447)
T ss_dssp             EECTTSSCCHHHHHHHHHHTTEECBC------------------------------CEEEEECHHHHHHTCCHHHHHHHH
T ss_pred             EEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCC-----------------CCCCCceeccCHHHhhCCCCHHHHHHHH
Confidence            766432 1244555556667888772111000000                 112456999974        26788888


Q ss_pred             HHHHHHHhc
Q 021783          296 SDLDKALRT  304 (307)
Q Consensus       296 ~~l~~~l~~  304 (307)
                      +.|.+++++
T Consensus       405 ~~l~~~l~~  413 (447)
T 3h7f_A          405 DIIATALAT  413 (447)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHhc
Confidence            888877753

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.83  E-value=1.3e-19  Score=161.65  Aligned_cols=135  Identities=18%  Similarity=0.178  Sum_probs=101.5

Q ss_pred             HHHHHhcCCCCeEEEcCCCC-cchHHHHhhhcccCCcEEEEecCC---------------ChHHHHhhcCCCc----eEE
Q 021783            5 AAVTHLLGTGEEIVAGDDLY-GGTDRLLSRVTPKTGVVVKRVNTC---------------DLDEVASAIGPWT----KLV   64 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~-~~~~~~~~~~~~~~g~~~~~v~~~---------------d~~~l~~~l~~~~----~~v   64 (307)
                      .++.+++++||  ++++++| +++.    ..++..|++++.++.+               |++++++++++++    ++|
T Consensus       105 ~al~~l~~~gd--i~~~~~~~~~~~----~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v  178 (456)
T 2ez2_A          105 LLSQLAIKPGQ--YVAGNMYFTTTR----YHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYI  178 (456)
T ss_dssp             HHHHHHCCTTC--EEEESSCCHHHH----HHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEE
T ss_pred             HHHHHhCCCCC--EeccccccchhH----HHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeEE
Confidence            45556789999  7888999 5555    4456789999988653               7899999987555    899


Q ss_pred             EEeCCCC-Ccccccc---HHHHHHHHHHcCCEEEEeCccCCC---------C-cCCcc--------CCCccEEEeccccc
Q 021783           65 WVESPTN-PRQQICD---IRKIAEMAHAHGALLLVDNSIMSP---------V-LSRPL--------ELGADIVMHSATKF  122 (307)
Q Consensus        65 ~~~~~~n-~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~---------~-~~~~~--------~~~~d~~~~s~~K~  122 (307)
                      ++++|+| |||.+++   +++|.++|++||+++|+|++|+.|         . .....        ....|+++.|++|+
T Consensus       179 ~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~  258 (456)
T 2ez2_A          179 CLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKD  258 (456)
T ss_dssp             EEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTT
T ss_pred             EEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCccc
Confidence            9999998 9999887   999999999999999999999864         2 11110        12358888889998


Q ss_pred             cccCCCceeEEEEEcChhHHHHHHHH
Q 021783          123 IAGHSDVMAGVLAVKGERLAKELYFL  148 (307)
Q Consensus       123 ~~g~~g~~~G~~~~~~~~~~~~~~~~  148 (307)
                      + ++ | ++|+++++++.+.+.+...
T Consensus       259 ~-~~-~-~gG~~~~~~~~~~~~~~~~  281 (456)
T 2ez2_A          259 C-LV-N-IGGFLCMNDDEMFSSAKEL  281 (456)
T ss_dssp             T-CC-S-SCEEEEESCHHHHHHHHHH
T ss_pred             C-CC-C-ceeEEEECCHHHHHHHHHH
Confidence            6 43 3 5899998656565554443

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.82  E-value=1.9e-19  Score=159.35  Aligned_cols=244  Identities=12%  Similarity=0.073  Sum_probs=148.6

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhcc------------cCCcEEEEecC---------CChHHHHhhcC---CCceEEEEeC
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTP------------KTGVVVKRVNT---------CDLDEVASAIG---PWTKLVWVES   68 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~------------~~g~~~~~v~~---------~d~~~l~~~l~---~~~~~v~~~~   68 (307)
                      |||+|++++|.|+++.........            ..++..+.++.         .|++++++.++   +++++|++++
T Consensus       133 ~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p  212 (429)
T 1s0a_A          133 ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEP  212 (429)
T ss_dssp             CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECS
T ss_pred             CCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEee
Confidence            699999999998775432211111            11455555542         37889998886   5777888777


Q ss_pred             C-CCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCcC---Ccc--CCCccEEEeccccccccCCC-ceeEEEEE
Q 021783           69 P-TNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPL--ELGADIVMHSATKFIAGHSD-VMAGVLAV  136 (307)
Q Consensus        69 ~-~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~--~~~~d~~~~s~~K~~~g~~g-~~~G~~~~  136 (307)
                      + +||||...+    +++|.++|++||+++|+|++|+ .+...   ...  ....|++  |+||++++  | +++|++++
T Consensus       213 ~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~l~~--G~~~iG~~~~  288 (429)
T 1s0a_A          213 IVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDIL--CLGKALTG--GTMTLSATLT  288 (429)
T ss_dssp             SEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT--SSSCCEEEEE
T ss_pred             cccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEE--EecccccC--CCccceEEEe
Confidence            7 899998776    9999999999999999999997 33221   111  2235655  68899853  6 77999999


Q ss_pred             cChhHHHHHHHHH-----HhcCCCCChhhHHHHhhccccHH--HHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCch
Q 021783          137 KGERLAKELYFLQ-----NAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGH  209 (307)
Q Consensus       137 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~  209 (307)
                      +++ +.+.+....     .......++..+..+.++++.+.  ...++..++.+.+.+.+++..           ..|.+
T Consensus       289 ~~~-~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~-----------~~~~~  356 (429)
T 1s0a_A          289 TRE-VAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPAR-----------DAEMV  356 (429)
T ss_dssp             CHH-HHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGG-----------GCTTE
T ss_pred             CHH-HHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh-----------cCCCE
Confidence            754 444443210     01112234455555555554322  123444555556666665421           01111


Q ss_pred             HHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-
Q 021783          210 ELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-  288 (307)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-  288 (307)
                      .    ..++.+.++++.+........+.+.|.++||.++.+                            .+++|||++. 
T Consensus       357 ~----~~~~~g~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~----------------------------~~~iRis~~~~  404 (429)
T 1s0a_A          357 A----DVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRPF----------------------------GKLIYLMPPYI  404 (429)
T ss_dssp             E----EEEEETTEEEEEESSCBCHHHHHHHHHHTTEECCCB----------------------------TTEEEECCCTT
T ss_pred             E----EEEEeeEEEEEEECCcccHHHHHHHHHHCCCEEecc----------------------------CCEEEEECCCC
Confidence            0    001235678888864223566777777788977641                            1359999765 


Q ss_pred             ---CChHHHHHHHHHHHhc
Q 021783          289 ---EDVNDLISDLDKALRT  304 (307)
Q Consensus       289 ---~~~~~~i~~l~~~l~~  304 (307)
                         +++++.++.|.+++++
T Consensus       405 ~t~e~i~~~~~~l~~~~~~  423 (429)
T 1s0a_A          405 ILPQQLQRLTAAVNRAVQD  423 (429)
T ss_dssp             CCHHHHHHHHHHHHHHTSS
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence               5667777777766654

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.82  E-value=6.8e-20  Score=162.34  Aligned_cols=252  Identities=11%  Similarity=0.084  Sum_probs=143.2

Q ss_pred             CCCCeEEEcCCCCcchHHHHhhhcccC---------Cc--EEEEecCC--------ChHHHHhhcC----CCceEEEEeC
Q 021783           12 GTGEEIVAGDDLYGGTDRLLSRVTPKT---------GV--VVKRVNTC--------DLDEVASAIG----PWTKLVWVES   68 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~~~~~~~~~~~~~---------g~--~~~~v~~~--------d~~~l~~~l~----~~~~~v~~~~   68 (307)
                      .++|+|++.++.|+++...........         ..  .+..++.+        |+++|++.++    +++++|+++.
T Consensus       119 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p  198 (430)
T 3i4j_A          119 PGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEP  198 (430)
T ss_dssp             TTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECS
T ss_pred             CCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            447899999999987653211111000         00  23344443        3488888886    5667778878


Q ss_pred             CCC-Ccccccc----HHHHHHHHHHcCCEEEEeCccC-CCCc---CCccCC-CccEEEeccccccccCCC-ceeEEEEEc
Q 021783           69 PTN-PRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVL---SRPLEL-GADIVMHSATKFIAGHSD-VMAGVLAVK  137 (307)
Q Consensus        69 ~~n-~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~---~~~~~~-~~d~~~~s~~K~~~g~~g-~~~G~~~~~  137 (307)
                      ++| ++|...+    +++|.++|++||+++|+||+|+ .+..   .....+ +....+.++||.+++  | +|+|+++++
T Consensus       199 ~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t~sK~l~~--G~~r~G~~~~~  276 (430)
T 3i4j_A          199 VVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAA--GYAPLAGLLAA  276 (430)
T ss_dssp             SCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEEECGGGTT--TSSCCEEEEEC
T ss_pred             cccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCcEEEEcccccC--CccccEEEEEC
Confidence            788 9998776    9999999999999999999997 3221   122223 333324468899953  8 899999997


Q ss_pred             ChhHHHHHHHH----HHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhc----CCCccEEecCCCCCCC
Q 021783          138 GERLAKELYFL----QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHP  207 (307)
Q Consensus       138 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~----~~~~~~~~~~~l~~~~  207 (307)
                      ++ +.+.+...    ........++..+..+.++++.+..  ..++..++.+.+.+.+++    .+.+..          
T Consensus       277 ~~-i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------  345 (430)
T 3i4j_A          277 PQ-VYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQ----------  345 (430)
T ss_dssp             HH-HHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEE----------
T ss_pred             HH-HHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCeEE----------
Confidence            44 54444432    1112233455566666666553322  233444444455554443    221111          


Q ss_pred             chHHHhhhccCCCceEEEEeCCH---------HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCC
Q 021783          208 GHELHYSQAKGAGSVLSFLTGSL---------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT  278 (307)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~  278 (307)
                              .++.+.++++.+.+.         +.+..+.+.+.++||.++++..+.                    .+..
T Consensus       346 --------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~--------------------~~~~  397 (430)
T 3i4j_A          346 --------VRGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAE--------------------PNGR  397 (430)
T ss_dssp             --------EEEETTEEEEEEC------------CHHHHHHHHHHTTEECC------------------------------
T ss_pred             --------EEEEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEeccccc--------------------CCCC
Confidence                    122466778877432         123667888888899888763211                    1223


Q ss_pred             CCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          279 EDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       279 ~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                      ++++||+++.    +++++.++.|.+++++
T Consensus       398 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  427 (430)
T 3i4j_A          398 GDHLLLGPPLSITAAEVDGLLALLAGALED  427 (430)
T ss_dssp             -CEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            5689999763    7888888888888765

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.81  E-value=2.6e-19  Score=158.96  Aligned_cols=242  Identities=14%  Similarity=0.124  Sum_probs=151.4

Q ss_pred             CCCCeEEEcCCCCcchHHHHhhhcccCCcE--------------EEEecCC----------ChHHHHhhc----CCCceE
Q 021783           12 GTGEEIVAGDDLYGGTDRLLSRVTPKTGVV--------------VKRVNTC----------DLDEVASAI----GPWTKL   63 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~--------------~~~v~~~----------d~~~l~~~l----~~~~~~   63 (307)
                      .++++|++.++.|.+.....   ....|..              +..++.+          |+++|++.+    .+++++
T Consensus       128 ~~~~~vi~~~~~yhg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~  204 (439)
T 3dxv_A          128 TGRSGVIAFAGAYHGCTVGS---MAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGA  204 (439)
T ss_dssp             HSCCEEEEETTCCCCSSHHH---HCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEE
T ss_pred             hCCCEEEEECCCCCCCcHHH---HhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEE
Confidence            35678888888886655321   1222221              2344444          589999998    567899


Q ss_pred             EEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccCC-CCc---CCccCCC--ccEEEeccccccccCCCceeEE
Q 021783           64 VWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVL---SRPLELG--ADIVMHSATKFIAGHSDVMAGV  133 (307)
Q Consensus        64 v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~~-~~~---~~~~~~~--~d~~~~s~~K~~~g~~g~~~G~  133 (307)
                      |++++++|++|.+.+    +++|.++|++||+++|+|++|+. +..   .....++  .|++  |+||.++  +|+++|+
T Consensus       205 vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~--~G~riG~  280 (439)
T 3dxv_A          205 AFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLG--GGLPLSA  280 (439)
T ss_dssp             EEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGG--TTSCCEE
T ss_pred             EEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchhc--CCcceEE
Confidence            999999999999988    99999999999999999999972 111   1112223  4554  8999995  3889999


Q ss_pred             EEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcC----CCccEEecCCCCCCC
Q 021783          134 LAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASH----PRVKKVNYAGLPEHP  207 (307)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~l~~~~  207 (307)
                      ++++++ +.+.+......... .++..+..+.++++.+..  ..++..++.+.+.+.+++.    +.+.           
T Consensus       281 ~~~~~~-~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----------  347 (439)
T 3dxv_A          281 VIAPAE-ILDCASAFAMQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIG-----------  347 (439)
T ss_dssp             EEEEHH-HHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEE-----------
T ss_pred             EEECHH-HHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeE-----------
Confidence            999854 43323221111222 444555555555543321  2344444555555555432    2110           


Q ss_pred             chHHHhhhccCCCceEEEEe--------CCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCC
Q 021783          208 GHELHYSQAKGAGSVLSFLT--------GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTE  279 (307)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  279 (307)
                             ..++.+.++++.+        ++......+.+.+..+||.++.+..                         ..
T Consensus       348 -------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------~~  395 (439)
T 3dxv_A          348 -------DIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGM-------------------------NG  395 (439)
T ss_dssp             -------EEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEEST-------------------------TS
T ss_pred             -------EEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCC-------------------------CC
Confidence                   0122467777776        3444577788888888998776432                         24


Q ss_pred             CeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          280 DLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       280 ~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                      +++||+++.    +++++.++.|.++++++
T Consensus       396 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  425 (439)
T 3dxv_A          396 NVLEFTPPLTITETDIHKALDLLDRAFSEL  425 (439)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHHHHHHHHTG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            579998764    67788888888887654

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.81  E-value=3.2e-19  Score=158.15  Aligned_cols=252  Identities=13%  Similarity=0.107  Sum_probs=150.6

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhc----------ccCCcEEEEecC------C---------ChHHHHhhcC----CCceE
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVT----------PKTGVVVKRVNT------C---------DLDEVASAIG----PWTKL   63 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~----------~~~g~~~~~v~~------~---------d~~~l~~~l~----~~~~~   63 (307)
                      .+|+|++.+|.|++.........          ...|+..+.++.      +         |++++++.++    +++++
T Consensus       127 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~  206 (433)
T 1zod_A          127 GKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAA  206 (433)
T ss_dssp             TCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEE
T ss_pred             CCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEE
Confidence            36899999999876543211111          113555554432      1         3888998886    56778


Q ss_pred             EEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCcCC---ccCCCccEEEeccccccccCCCceeEEEE
Q 021783           64 VWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR---PLELGADIVMHSATKFIAGHSDVMAGVLA  135 (307)
Q Consensus        64 v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~~~---~~~~~~d~~~~s~~K~~~g~~g~~~G~~~  135 (307)
                      |+++.++||||...+    +++|.++|++||+++|+|++|+ .+....   ...++.+..+.|+||+++ . |+++|+++
T Consensus       207 vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~-~-G~~ig~~~  284 (433)
T 1zod_A          207 FIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLG-A-GLPLAAIV  284 (433)
T ss_dssp             EEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHH-T-TSSCEEEE
T ss_pred             EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEEEeccccc-C-CCCeeEEE
Confidence            887766788998765    9999999999999999999998 332211   112233333458999995 3 78899999


Q ss_pred             EcChhHHHHHHHHHHh--cCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHH
Q 021783          136 VKGERLAKELYFLQNA--EGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL  211 (307)
Q Consensus       136 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~  211 (307)
                      ++++ +.+.+......  .....++..+..+..+++.+..  ..++..++.+.+.+.+++..       .   ..+.+  
T Consensus       285 ~~~~-~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~l~-------~---~~~~~--  351 (433)
T 1zod_A          285 TSAA-IEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLM-------E---RFDCI--  351 (433)
T ss_dssp             ECHH-HHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-------H---HCTTE--
T ss_pred             EhHH-HHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-------H---hCCCe--
Confidence            9854 44444331111  1223344555555555543322  23344444555555554310       0   00000  


Q ss_pred             HhhhccCCCceEEEEeCC--------HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEE
Q 021783          212 HYSQAKGAGSVLSFLTGS--------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVR  283 (307)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iR  283 (307)
                        ...++.+.++++.+..        ......+.+.+.++||.++.|..+                      + .++++|
T Consensus       352 --~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----------------------~-~~~~lR  406 (433)
T 1zod_A          352 --GDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLP----------------------G-MGGVFR  406 (433)
T ss_dssp             --EEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCT----------------------T-SCCEEE
T ss_pred             --EEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCC----------------------C-CCCEEE
Confidence              0012246677777642        123667788887889988775531                      1 246799


Q ss_pred             EEecc----CChHHHHHHHHHHHhc
Q 021783          284 ISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       284 is~~~----~~~~~~i~~l~~~l~~  304 (307)
                      |+++.    +++++.++.|.+++++
T Consensus       407 i~~~~~~t~~~i~~~l~~l~~~l~~  431 (433)
T 1zod_A          407 IAPPLTVSEDEIDLGLSLLGQAIER  431 (433)
T ss_dssp             ECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EECCcCCCHHHHHHHHHHHHHHHHH
Confidence            98764    6777777777777654

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.80  E-value=6.5e-19  Score=156.91  Aligned_cols=245  Identities=14%  Similarity=0.142  Sum_probs=151.3

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhcc-----------cCCcEEEEecC--------CC--------hHHHHhhcC----CCc
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTP-----------KTGVVVKRVNT--------CD--------LDEVASAIG----PWT   61 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~-----------~~g~~~~~v~~--------~d--------~~~l~~~l~----~~~   61 (307)
                      +||+|++.++.|++..........           ..|+..+.+|.        .|        ++++++.++    +++
T Consensus       141 ~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~  220 (449)
T 3a8u_X          141 TKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNI  220 (449)
T ss_dssp             TCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGE
T ss_pred             CCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCE
Confidence            689999999999876432111111           12445554442        14        888998886    467


Q ss_pred             eEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCcCC---ccCCC--ccEEEeccccccccCCC-ce
Q 021783           62 KLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR---PLELG--ADIVMHSATKFIAGHSD-VM  130 (307)
Q Consensus        62 ~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~~~---~~~~~--~d~~~~s~~K~~~g~~g-~~  130 (307)
                      ++|++++.+|+||.+.+    +++|.++|++||+++|+|++|+ .+....   ...++  .|++  |+||++++  | ++
T Consensus       221 ~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~--G~~~  296 (449)
T 3a8u_X          221 AAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTN--GAIP  296 (449)
T ss_dssp             EEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT--TSSC
T ss_pred             EEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccC--CCCc
Confidence            88888777788999888    9999999999999999999995 443211   12223  4655  78899953  6 78


Q ss_pred             eEEEEEcChhHHHHHHHHH---------HhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCccEEe
Q 021783          131 AGVLAVKGERLAKELYFLQ---------NAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVN  199 (307)
Q Consensus       131 ~G~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~  199 (307)
                      +|+++++++ +.+.+....         .......++..+..+.++++.+..  ..++..++.+.+.+.+++..      
T Consensus       297 ~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~------  369 (449)
T 3a8u_X          297 MGAVIASTE-IYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIK------  369 (449)
T ss_dssp             CEEEEEEHH-HHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTT------
T ss_pred             eEEEEECHH-HHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh------
Confidence            999998754 444443210         011123344555555555554332  23444555555666665321      


Q ss_pred             cCCCCCCCchHHHhhhccCCCceEEEEeCCHH-----HHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHh
Q 021783          200 YAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA-----LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA  274 (307)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~  274 (307)
                           .++.+   . ..++.+.++++.+....     ....+.+.|..+||.++.+.                       
T Consensus       370 -----~~~~~---~-~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-----------------------  417 (449)
T 3a8u_X          370 -----GAKNV---I-DIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGG-----------------------  417 (449)
T ss_dssp             -----TSTTE---E-EEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEET-----------------------
T ss_pred             -----cCCCe---E-EEeeeEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecCC-----------------------
Confidence                 11110   0 01224678888885421     13357777777888776531                       


Q ss_pred             cCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          275 RGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       275 ~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                           +++||+++.    +++++.++.|.++++++
T Consensus       418 -----~~iRis~~~~~t~~~i~~~l~~l~~~l~~~  447 (449)
T 3a8u_X          418 -----DTLQFGPTFNSKPQDLDRLFDAVGEVLNKL  447 (449)
T ss_dssp             -----TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             -----CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence                 349999753    67888888888877654

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.79  E-value=1.3e-18  Score=155.58  Aligned_cols=263  Identities=15%  Similarity=0.138  Sum_probs=152.7

Q ss_pred             HHHHHhcC----CCCe---EEEcCCCCcchHHHHhhhcccCCcEEEEecC---------------CChHHHHhhcCC---
Q 021783            5 AAVTHLLG----TGEE---IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---------------CDLDEVASAIGP---   59 (307)
Q Consensus         5 ~~~~~~~~----~gd~---Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------------~d~~~l~~~l~~---   59 (307)
                      .++.++++    +||+   |+++.+.|..+.    ..+...|++++.++.               .|+++|++++++   
T Consensus       106 ~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~  181 (467)
T 1ax4_A          106 ILFPVLLKYKQKEGKAKNPVFISNFHFDTTA----AHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGA  181 (467)
T ss_dssp             HHHHHHHHHHHHTTCCSSCEEEESSCCHHHH----HHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCG
T ss_pred             HHHHHHHHhhccCCCccceEEEeccccchhh----HHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCC
Confidence            44555666    9999   999855544444    344556888776531               278999999873   


Q ss_pred             -CceEEEEeCCCCCc-ccccc---HHHHHHHHHHcCCEEEEeCccCC-----------CCcC-CccC------CCccEEE
Q 021783           60 -WTKLVWVESPTNPR-QQICD---IRKIAEMAHAHGALLLVDNSIMS-----------PVLS-RPLE------LGADIVM  116 (307)
Q Consensus        60 -~~~~v~~~~~~n~t-G~~~~---~~~l~~~~~~~~~~li~D~a~~~-----------~~~~-~~~~------~~~d~~~  116 (307)
                       ++++|++++++||+ |.+++   +++|.++|++||+++|+|++++.           +... ....      ...|+++
T Consensus       182 ~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  261 (467)
T 1ax4_A          182 DNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALT  261 (467)
T ss_dssp             GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEE
T ss_pred             CCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEE
Confidence             78999999999999 78764   78999999999999999998654           2211 1111      2368899


Q ss_pred             eccccccccCCCceeEEEEEcCh-hHHHHHHHHHHh-cCC----CCChhhHHHHhhccccH--HHHHHHHHHHHHHHHHH
Q 021783          117 HSATKFIAGHSDVMAGVLAVKGE-RLAKELYFLQNA-EGS----GLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEF  188 (307)
Q Consensus       117 ~s~~K~~~g~~g~~~G~~~~~~~-~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~  188 (307)
                      .|+||+++ .+-  +|+++.+++ .+.+.+...... .+.    ............+++..  ....++..++.+.+.+.
T Consensus       262 ~s~sK~~g-~~~--Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~  338 (467)
T 1ax4_A          262 MSAKKDPL-LNI--GGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDR  338 (467)
T ss_dssp             EETTSTTC-CSS--CEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             EeccccCC-CCc--ceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            99999995 432  578887744 454444333221 111    11111111111122211  12344445666777777


Q ss_pred             HhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEE-------eCCH-HHHHHHHhcC-CcceeecCC-CCccceeec
Q 021783          189 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL-------TGSL-ALSKHVVETT-KYFSITVSF-GSVKSLISM  258 (307)
Q Consensus       189 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~l-~~~gi~v~~-g~~~~~~~~  258 (307)
                      |++ .++. +..                ...+.++++.       +... .....+.+.| .+.||.+++ |..+... .
T Consensus       339 L~~-~~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~-~  399 (467)
T 1ax4_A          339 LRE-AGIP-IQY----------------PTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGR-D  399 (467)
T ss_dssp             HHH-TTCC-BCS----------------SCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCB-C
T ss_pred             HHh-CCCC-ccc----------------CCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCcccccc-c
Confidence            765 2110 000                1134566666       3221 1367788888 888998887 5431100 0


Q ss_pred             ccccCCCCCcHHHHHhcCCCCCeEEEEecc-----CChHHHHHHHHHHHh
Q 021783          259 PCFMSHASIPVEVRQARGLTEDLVRISVGI-----EDVNDLISDLDKALR  303 (307)
Q Consensus       259 p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-----~~~~~~i~~l~~~l~  303 (307)
                      |..    ..      ......+++|+|++.     ++++++++.|.++++
T Consensus       400 ~~~----g~------~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~  439 (467)
T 1ax4_A          400 PAT----GE------QKHADMEFMRLTIARRVYTNDHMDYIADALIGLKE  439 (467)
T ss_dssp             TTT----CS------BCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHH
T ss_pred             ccc----cc------ccccccceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence            000    00      000124789999983     556666666666554

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.79  E-value=4.5e-19  Score=157.23  Aligned_cols=241  Identities=15%  Similarity=0.111  Sum_probs=151.5

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhcccCC-------------------cEEEEecCCChHHHHhhcC---CCceEEEEeCCC
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTPKTG-------------------VVVKRVNTCDLDEVASAIG---PWTKLVWVESPT   70 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~~~g-------------------~~~~~v~~~d~~~l~~~l~---~~~~~v~~~~~~   70 (307)
                      ++++|++.++.|.+....   .....|                   ..+..+|.+|++++++.++   +++++|++++++
T Consensus       136 ~~~~vi~~~~~yhg~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~  212 (434)
T 3l44_A          136 GRTKIMKFAGCYHGHSDL---VLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIV  212 (434)
T ss_dssp             CCCEEEEETTCCCCSSGG---GGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSB
T ss_pred             CCCEEEEEcCccCCCcHH---HHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCC
Confidence            689999999998765421   111111                   1566677789999999886   567888888888


Q ss_pred             CCcccccc----HHHHHHHHHHcCCEEEEeCccCCC---CcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHH
Q 021783           71 NPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP---VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        71 n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~~~---~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~  143 (307)
                      |++|.+.+    +++|.++|++||+++|+|++|...   .......++...-+.|+||.++  +|+++|+++++++ +.+
T Consensus       213 ~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~~~~~~di~t~sK~~~--~G~~iG~~~~~~~-i~~  289 (434)
T 3l44_A          213 GNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDLLGVTPDLTALGKVIG--GGLPIGAYGGKKE-IME  289 (434)
T ss_dssp             CTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHHHTCCCSEEEEEGGGG--TTSSCEEEEECHH-HHT
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccccHHHHHcCCCCCeeehhhhhc--CCcCeeeEEEcHH-HHH
Confidence            88888887    999999999999999999999732   1111112233333557899995  5789999988754 433


Q ss_pred             HHHHHH---HhcCCCCChhhHHHHhhccccH--HHHHHHHHHHHHHHHHHHhcC----CCccEEecCCCCCCCchHHHhh
Q 021783          144 ELYFLQ---NAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASH----PRVKKVNYAGLPEHPGHELHYS  214 (307)
Q Consensus       144 ~~~~~~---~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~l~~~~~~~~~~~  214 (307)
                      .+....   .......++..+..+.++++.+  +...++..++.+.+.+.|++.    +.+.                  
T Consensus       290 ~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~------------------  351 (434)
T 3l44_A          290 QVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDI------------------  351 (434)
T ss_dssp             TBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCE------------------
T ss_pred             hhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCCE------------------
Confidence            332211   1112234445555555555422  223444455555555555432    1110                  


Q ss_pred             hccCCCceEEEEeC-------------CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCe
Q 021783          215 QAKGAGSVLSFLTG-------------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL  281 (307)
Q Consensus       215 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  281 (307)
                      ..++.+.++++.+.             +......+.+.+.++||.++.+..                           +.
T Consensus       352 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------------~~  404 (434)
T 3l44_A          352 TLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKY---------------------------EA  404 (434)
T ss_dssp             EEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTT---------------------------CC
T ss_pred             EEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecCC---------------------------Cc
Confidence            01234677888762             233356778888888998877542                           23


Q ss_pred             EEEEecc--CChHHHHHHHHHHHhc
Q 021783          282 VRISVGI--EDVNDLISDLDKALRT  304 (307)
Q Consensus       282 iRis~~~--~~~~~~i~~l~~~l~~  304 (307)
                      +|+++..  +++++.++.|.+++++
T Consensus       405 ~rl~~~~t~e~i~~~l~~l~~~l~~  429 (434)
T 3l44_A          405 WFLTTEHTKEDIEYTIEAVGRAFAA  429 (434)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEecccCHHHHHHHHHHHHHHHHH
Confidence            7776532  7888888888888764

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.79  E-value=4.8e-19  Score=157.85  Aligned_cols=253  Identities=16%  Similarity=0.168  Sum_probs=152.9

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhcc---------cCCcEEEEecC--------CC---------hHHHHhhcC----CCce
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTP---------KTGVVVKRVNT--------CD---------LDEVASAIG----PWTK   62 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~---------~~g~~~~~v~~--------~d---------~~~l~~~l~----~~~~   62 (307)
                      ++|+|++.++.|.+..........         .....+..++.        +|         +++|++.++    ++++
T Consensus       138 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~  217 (452)
T 3n5m_A          138 HRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIA  217 (452)
T ss_dssp             TCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEE
T ss_pred             CCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEE
Confidence            789999999999876532211110         01112334443        23         899999887    6788


Q ss_pred             EEEEeCC-CCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCc---CCccCCCccEEEeccccccccCCC-ceeE
Q 021783           63 LVWVESP-TNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVL---SRPLELGADIVMHSATKFIAGHSD-VMAG  132 (307)
Q Consensus        63 ~v~~~~~-~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~---~~~~~~~~d~~~~s~~K~~~g~~g-~~~G  132 (307)
                      +|+++++ +| +|.+.+    +++|.++|++||+++|+||+|. .+..   .....++....+.+++|.++ . | +++|
T Consensus       218 ~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~-~-G~~~ig  294 (452)
T 3n5m_A          218 AFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGIT-S-AYLPLS  294 (452)
T ss_dssp             EEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGG-T-TSSCCE
T ss_pred             EEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEeeccccc-C-CCcceE
Confidence            8999988 89 998886    9999999999999999999987 3221   12223343333446899995 3 7 8899


Q ss_pred             EEEEcChhHHHHHHH---HH---HhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCccEEecCCCC
Q 021783          133 VLAVKGERLAKELYF---LQ---NAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLP  204 (307)
Q Consensus       133 ~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~  204 (307)
                      +++++++ +.+.+..   ..   .......++..+..+.++++.+..  ..++..++.+.+.+.+++..          .
T Consensus       295 ~~~~~~~-i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~----------~  363 (452)
T 3n5m_A          295 ATAVKRE-IYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEI----------G  363 (452)
T ss_dssp             EEEEEHH-HHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH----------T
T ss_pred             EEEECHH-HHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH----------h
Confidence            9999754 4443321   11   112223455666666666654322  23444455555555554320          0


Q ss_pred             CCCchHHHhhhccCCCceEEEEeCC---------HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhc
Q 021783          205 EHPGHELHYSQAKGAGSVLSFLTGS---------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQAR  275 (307)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~  275 (307)
                      .++.+.    ..++.+.++++.+..         .+....+.+.+..+||.++++..+.                     
T Consensus       364 ~~~~~~----~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~---------------------  418 (452)
T 3n5m_A          364 EHPLVG----DIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTT---------------------  418 (452)
T ss_dssp             TCTTEE----EEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSS---------------------
T ss_pred             cCCCeE----EEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCccc---------------------
Confidence            011100    112346677776521         2234567777888899887765421                     


Q ss_pred             CCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          276 GLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       276 ~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                      ...++++||+++.    +++++.++.|.+++++
T Consensus       419 ~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  451 (452)
T 3n5m_A          419 AGYNNILTLAPPLVISSEEIAFVIGTLKTAMER  451 (452)
T ss_dssp             TTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            0125789998765    6777888888877764

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.78  E-value=6e-19  Score=151.61  Aligned_cols=244  Identities=13%  Similarity=-0.004  Sum_probs=151.0

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~   77 (307)
                      .++..++ +||++++-..++.+.  .|...++..|++++.++.+       ++++  + ++++|++|.++|.+|.||.+.
T Consensus        84 ~~~~~~~-~~~~~~~i~~~~~~~--~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~~~t~lv~~~~~e~~tG~~~  157 (361)
T 3m5u_A           84 MIPMNLA-LNGVCEYANTGVWTK--KAIKEAQILGVNVKTVASSEESNFDHIPRV--E-FSDNADYAYICSNNTIYGTQY  157 (361)
T ss_dssp             HHHHHHC-CSSCEEEEECSHHHH--HHHHHHHHTTCCEEEEEECTTTTSCSCCCC--C-CCTTSSEEEEESEETTTTEEC
T ss_pred             HHHHhcC-CCCeEEEEeCCHHHH--HHHHHHHHcCCceEEEecccCcCCCcCChh--h-cCCCCCEEEEeCCCCCcceeC
Confidence            3555566 788763222222233  3445567788888888753       3445  4 888999999999999999997


Q ss_pred             cHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH----------
Q 021783           78 DIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY----------  146 (307)
Q Consensus        78 ~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~----------  146 (307)
                      |.     +++ +|+++++|++|+.|..+ +..+  .|++++|.||++ ||+|  .|+++++++.+.+...          
T Consensus       158 ~~-----i~~-~~~~~~vD~~q~~g~~~id~~~--~d~~~~s~~K~~-gp~G--~g~l~~~~~~~~~~~~~~~p~~~~~~  226 (361)
T 3m5u_A          158 QN-----YPK-TKTPLIVDASSDFFSRKVDFSN--IALFYGGVQKNA-GISG--LSCIFIRKDMLERSKNKQIPSMLNYL  226 (361)
T ss_dssp             SS-----CCC-CSSCEEEECGGGTTSSCCCCTT--EEEEEEETTTTS-SCTT--CEEEEEEHHHHHHHHTCCCCGGGCHH
T ss_pred             Cc-----ccc-cCCEEEEEcccccCCCCCCccc--CCEEEEechhcc-CCCc--cEEEEEcHHHHhhhcCCCCCceeehH
Confidence            62     333 49999999999999987 5553  799999999999 7999  9999999765543211          


Q ss_pred             HH-HHh-cCCCCChhhHHHHhhccc------cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          147 FL-QNA-EGSGLAPFDCWICLRGVK------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       147 ~~-~~~-~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      .. ... ...+++....+....+++      .++...++..+..+.+.+.+++.+++.....+             +...
T Consensus       227 ~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~-------------~~~r  293 (361)
T 3m5u_A          227 THAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHAD-------------KKDR  293 (361)
T ss_dssp             HHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSC-------------GGGB
T ss_pred             HHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCC-------------HHHc
Confidence            01 111 112233333333333332      23444455556666677777665432111100             0011


Q ss_pred             CCceEEEEeCC-HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHH
Q 021783          219 AGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD  297 (307)
Q Consensus       219 ~~~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~  297 (307)
                      ...+++|.+++ ......+...|..+||.++.|..                         ..+.+|+|++..+.++.++.
T Consensus       294 s~~ivsf~~~~~~~~~~~~~~~L~~~gI~~~~g~~-------------------------~~g~iRiS~~~~~t~edId~  348 (361)
T 3m5u_A          294 SLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHR-------------------------ILGGIRASIYNALNLDQVKT  348 (361)
T ss_dssp             CSSEEEEEESSCTTHHHHHHHHHHHTTEECCBCCT-------------------------TTCSEEEECCTTSCHHHHHH
T ss_pred             CCeEEEEECCCchhhhHHHHHHHHHCCCEEecCCC-------------------------ccCeEEEEccCCCCHHHHHH
Confidence            24688999875 11114677888888998877653                         01349999987555555555


Q ss_pred             HHHHHh
Q 021783          298 LDKALR  303 (307)
Q Consensus       298 l~~~l~  303 (307)
                      |.++|+
T Consensus       349 l~~al~  354 (361)
T 3m5u_A          349 LCEFMK  354 (361)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555554

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.77  E-value=4.8e-18  Score=151.68  Aligned_cols=246  Identities=13%  Similarity=0.066  Sum_probs=149.2

Q ss_pred             CCCeEEEcCCCCcchHHHHhhh---------cccCCcEEEEec--C----CC------------hHHHHhhcC----CCc
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRV---------TPKTGVVVKRVN--T----CD------------LDEVASAIG----PWT   61 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~---------~~~~g~~~~~v~--~----~d------------~~~l~~~l~----~~~   61 (307)
                      ++++|++.++.|.+........         .......+..++  .    +|            +++|++.+.    +++
T Consensus       143 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~  222 (460)
T 3gju_A          143 EKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETI  222 (460)
T ss_dssp             TCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGE
T ss_pred             CCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCE
Confidence            5799999999997765332111         111112233343  2    22            688888886    577


Q ss_pred             eEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCcC---CccCCCccEEEeccccccccCCCceeEE
Q 021783           62 KLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLELGADIVMHSATKFIAGHSDVMAGV  133 (307)
Q Consensus        62 ~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~~~~~d~~~~s~~K~~~g~~g~~~G~  133 (307)
                      ++|+++.++|++|...+    +++|.++|++||+++|+||+|+ .+...   ....++....+.+++|.+++ .++++|+
T Consensus       223 aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~l~g-G~~~lg~  301 (460)
T 3gju_A          223 AAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTS-AYAPLSG  301 (460)
T ss_dssp             EEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTT-TSSCCEE
T ss_pred             EEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeeeehhhcC-CCCCeEE
Confidence            88999988999998765    9999999999999999999997 33221   11223333334468899954 2267999


Q ss_pred             EEEcChhHHHHHHHH-------HHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHh----cCCCccEEec
Q 021783          134 LAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA----SHPRVKKVNY  200 (307)
Q Consensus       134 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~----~~~~~~~~~~  200 (307)
                      ++++++ +.+.+...       ........++..+..+.++++.+..  ..++..++.+.+.+.+.    +++.+..   
T Consensus       302 v~~~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---  377 (460)
T 3gju_A          302 VIVADR-VWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGE---  377 (460)
T ss_dssp             EEEEHH-HHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEE---
T ss_pred             EEECHH-HHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEE---
Confidence            999855 44444321       1112223455666666666654322  23444444444444442    2221111   


Q ss_pred             CCCCCCCchHHHhhhccCCCceEEEEeCCH-----------HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcH
Q 021783          201 AGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV  269 (307)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~  269 (307)
                                     .++.+.++.+.+...           +....+.+.+.++||.++++.                  
T Consensus       378 ---------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------------------  424 (460)
T 3gju_A          378 ---------------VRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP------------------  424 (460)
T ss_dssp             ---------------EEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS------------------
T ss_pred             ---------------EeeeeEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCC------------------
Confidence                           123466777777422           125677777878888776533                  


Q ss_pred             HHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          270 EVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       270 ~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                              .++++||+++.    +++++.++.|.+++++
T Consensus       425 --------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  455 (460)
T 3gju_A          425 --------QGDILGFAPPLCLTREQADIVVSKTADAVKS  455 (460)
T ss_dssp             --------SSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             --------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                    13569999654    6788888888887754

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.76  E-value=1.7e-18  Score=153.46  Aligned_cols=247  Identities=16%  Similarity=0.143  Sum_probs=151.5

Q ss_pred             cCCCCeEEEcCCCCcchHHHHhhhc----------ccCCc------EEEEecCCChHHHHhhcC---CCceEEEEeCCCC
Q 021783           11 LGTGEEIVAGDDLYGGTDRLLSRVT----------PKTGV------VVKRVNTCDLDEVASAIG---PWTKLVWVESPTN   71 (307)
Q Consensus        11 ~~~gd~Vlv~~~~~~~~~~~~~~~~----------~~~g~------~~~~v~~~d~~~l~~~l~---~~~~~v~~~~~~n   71 (307)
                      +.++++|++.+++|.+.........          ...|+      ++..++.+|++++++.++   +++++|++++.++
T Consensus       135 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~  214 (434)
T 2epj_A          135 YTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIA  214 (434)
T ss_dssp             HHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBC
T ss_pred             hhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcC
Confidence            3456788888888876542100000          11243      366777789999999986   4788888888888


Q ss_pred             Ccccccc----HHHHHHHHHHcCCEEEEeCccCCCCcC-C---ccCCC--ccEEEeccccccccCCCceeEEEEEcChhH
Q 021783           72 PRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS-R---PLELG--ADIVMHSATKFIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        72 ~tG~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~-~---~~~~~--~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~  141 (307)
                      ++|.+.+    +++|.++|++||+++|+|++|+ +... .   ...++  .|+  .|+||+++ . |+++|+++++++ +
T Consensus       215 ~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di--~s~sK~l~-~-G~~~G~v~~~~~-~  288 (434)
T 2epj_A          215 NAGVIPPRREFLAALQRLSRESGALLILDEVVT-GFRLGLEGAQGYFNIEGDI--IVLGKIIG-G-GFPVGAVAGSRE-V  288 (434)
T ss_dssp             SSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TTTSSTTHHHHHHTCCCSE--EEEEGGGG-T-TSSCEEEEECHH-H
T ss_pred             CCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ceeCCcchhhHHhCCCCCe--eeecchhc-C-CcceeeeeecHH-H
Confidence            8999887    9999999999999999999998 2211 1   11123  454  58899995 3 788999999854 4


Q ss_pred             HHHHHHHHH-hc--CCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhc
Q 021783          142 AKELYFLQN-AE--GSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  216 (307)
Q Consensus       142 ~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~  216 (307)
                      .+.+..... ..  ....++..+..+...++.+..  ..++..++.+.+.+.|++...  .  .+ +.         ...
T Consensus       289 ~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~--~~-~~---------~~~  354 (434)
T 2epj_A          289 MSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLD--R--TG-LP---------YTI  354 (434)
T ss_dssp             HTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--H--HT-CC---------EEE
T ss_pred             HHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh--h--CC-Cc---------EEE
Confidence            333322110 11  123444555555555554322  234444555555555543200  0  00 00         001


Q ss_pred             cCCCceEEEEeCC-------------HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEE
Q 021783          217 KGAGSVLSFLTGS-------------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVR  283 (307)
Q Consensus       217 ~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iR  283 (307)
                      ++.+.++++.+.+             ......+.+.|.++||.++.|..                           .++|
T Consensus       355 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------------~~~~  407 (434)
T 2epj_A          355 NRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNL---------------------------EAVF  407 (434)
T ss_dssp             EEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT---------------------------SCEE
T ss_pred             EEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCC---------------------------CcEE
Confidence            2246788888854             23467788888888998887642                           1155


Q ss_pred             EEec--cCChHHHHHHHHHHHhc
Q 021783          284 ISVG--IEDVNDLISDLDKALRT  304 (307)
Q Consensus       284 is~~--~~~~~~~i~~l~~~l~~  304 (307)
                      +++.  .+++++.++.|.+++++
T Consensus       408 ~~~~~t~e~i~~~l~~l~~~l~~  430 (434)
T 2epj_A          408 TGLPHQGEALEIAVEGLRSSLKT  430 (434)
T ss_dssp             CCTTCSHHHHHHHHHHHHHHHHH
T ss_pred             EeccCCHHHHHHHHHHHHHHHHH
Confidence            5443  26788888888887754

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.76  E-value=1.8e-18  Score=154.11  Aligned_cols=246  Identities=11%  Similarity=0.054  Sum_probs=152.4

Q ss_pred             CC-CeEEEcCCCCcchHHHHhhhcc----------cCCcEEEEecC-------CChHHHHhhcC---CCceEEEEeC-CC
Q 021783           13 TG-EEIVAGDDLYGGTDRLLSRVTP----------KTGVVVKRVNT-------CDLDEVASAIG---PWTKLVWVES-PT   70 (307)
Q Consensus        13 ~g-d~Vlv~~~~~~~~~~~~~~~~~----------~~g~~~~~v~~-------~d~~~l~~~l~---~~~~~v~~~~-~~   70 (307)
                      +| ++|++.++.|.+..........          .....+..++.       +|+++|++.++   +++++|++++ ++
T Consensus       165 ~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~  244 (457)
T 3tfu_A          165 PGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQ  244 (457)
T ss_dssp             TTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEE
T ss_pred             CCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCc
Confidence            45 5889888888765432211110          11112233333       37889998887   6789999998 99


Q ss_pred             CCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCc---CCccCCC--ccEEEeccccccccCCCceeEEEEEcChh
Q 021783           71 NPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVL---SRPLELG--ADIVMHSATKFIAGHSDVMAGVLAVKGER  140 (307)
Q Consensus        71 n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~---~~~~~~~--~d~~~~s~~K~~~g~~g~~~G~~~~~~~~  140 (307)
                      |++|...+    +++|.++|++||+++|+||+|. .+..   .....++  .|++  |++|.++| ..+++|+++++++ 
T Consensus       245 ~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~g-G~~~lG~v~~~~~-  320 (457)
T 3tfu_A          245 GAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIM--CVGKALTG-GYLSLAATLCTAD-  320 (457)
T ss_dssp             CTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGT-TSSCCEEEEEEHH-
T ss_pred             CCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCceEE--EEChhhhC-CCcceEEEEEcHH-
Confidence            99999875    9999999999999999999986 2221   1122223  4555  88999854 2257999999854 


Q ss_pred             HHHHHHHH-----HHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHh
Q 021783          141 LAKELYFL-----QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  213 (307)
Q Consensus       141 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~  213 (307)
                      +.+.+...     ........++..+..+.+.++.+..  ..++..+..+.+.+.++...           ..+.+.   
T Consensus       321 i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-----------~~~~v~---  386 (457)
T 3tfu_A          321 VAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTAR-----------ALPAVT---  386 (457)
T ss_dssp             HHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGG-----------GSTTEE---
T ss_pred             HHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-----------cCCCee---
Confidence            44444311     1112223455566666665553321  23444455555565555321           011110   


Q ss_pred             hhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----C
Q 021783          214 SQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----E  289 (307)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~  289 (307)
                       ..++.+.++++.+........+.+.+.++||.+++.                            .+++|++++.    +
T Consensus       387 -~vr~~G~~~~i~l~~~~~~~~~~~~l~~~Gv~v~~~----------------------------~~~lRi~p~~~~t~e  437 (457)
T 3tfu_A          387 -DVRVCGAIGVIECDRPVDLAVATPAALDRGVWLRPF----------------------------RNLVYAMPPYICTPA  437 (457)
T ss_dssp             -EEEECSSCEEEEESSCCCHHHHHHHHHHTTEECCCB----------------------------TTEEEECCCTTCCHH
T ss_pred             -eeecCCeEEEEEECCcccHHHHHHHHHHCCeEEEec----------------------------CCEEEEECCCCCCHH
Confidence             113357788888854334677888888889987642                            1349998754    7


Q ss_pred             ChHHHHHHHHHHHhcC
Q 021783          290 DVNDLISDLDKALRTG  305 (307)
Q Consensus       290 ~~~~~i~~l~~~l~~~  305 (307)
                      ++++.++.|.++++++
T Consensus       438 ei~~~l~~L~~~l~~~  453 (457)
T 3tfu_A          438 EITQITSAMVEVARLV  453 (457)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8888888888888764

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.76  E-value=1.5e-18  Score=154.74  Aligned_cols=243  Identities=17%  Similarity=0.134  Sum_probs=140.1

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhc-------ccCCc------EEEEecCCChHHHHhhcC---CCceEEEEeCCCCCcccc
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVT-------PKTGV------VVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQI   76 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~-------~~~g~------~~~~v~~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~   76 (307)
                      .+++|++.++.|++.........       ...|+      .+..++.+|++++++.++   +++++|++++++|++|.+
T Consensus       138 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~  217 (453)
T 2cy8_A          138 GRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVT  217 (453)
T ss_dssp             CCCEEEEECC----------------------------CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTE
T ss_pred             CCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCc
Confidence            45788888898876543211101       01243      355667789999999887   477888888777889998


Q ss_pred             cc----HHHHHHHHHHcCCEEEEeCccCCCCcC-C---ccCCC--ccEEEeccccccccCCCceeEEEEEcChhHHHHHH
Q 021783           77 CD----IRKIAEMAHAHGALLLVDNSIMSPVLS-R---PLELG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  146 (307)
Q Consensus        77 ~~----~~~l~~~~~~~~~~li~D~a~~~~~~~-~---~~~~~--~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~  146 (307)
                      .+    +++|.++|++||+++|+|++|+ +... .   ...++  .|++  |++|+++ . |+++|+++++++ +.+.+.
T Consensus       218 ~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l~-~-G~~~G~v~~~~~-~~~~l~  291 (453)
T 2cy8_A          218 PVSDSFLREGAELARQYGALFILDEVIS-GFRVGNHGMQALLDVQPDLT--CLAKASA-G-GLPGGILGGRED-VMGVLS  291 (453)
T ss_dssp             ECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTCTTHHHHHHTCCCSEE--EEEGGGG-T-TSSCEEEEECHH-HHTTSS
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEecCcc-ccccCchhhhHHhCCCCcEE--EEChhhh-C-CcceEEEechHH-HHHHhc
Confidence            87    9999999999999999999997 3211 1   11123  4654  8899995 3 678999999854 433332


Q ss_pred             H-----HHHhcCCCCChhhHHHHhhcccc-H-HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCC
Q 021783          147 F-----LQNAEGSGLAPFDCWICLRGVKT-M-ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  219 (307)
Q Consensus       147 ~-----~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (307)
                      .     .........++..+..+.+.++. + ....+...++.+.+.+.+++...  .  .+ +   .      ...++.
T Consensus       292 ~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~--~~-~---~------~~~~~~  357 (453)
T 2cy8_A          292 RGSDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFA--R--KG-L---N------WLAYGR  357 (453)
T ss_dssp             SCC---------CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH--H--TT-C---C------EEEECC
T ss_pred             cccCCCceeCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh--h--CC-C---c------EEEEEe
Confidence            2     11112223445555555555554 3 22334445555555555543200  0  00 0   0      001235


Q ss_pred             CceEEEEeCC-------------------HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCC
Q 021783          220 GSVLSFLTGS-------------------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTED  280 (307)
Q Consensus       220 ~~~~~~~~~~-------------------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  280 (307)
                      +.++++.+.+                   ......+.+.+.++||.++.+.                             
T Consensus       358 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~~~-----------------------------  408 (453)
T 2cy8_A          358 FSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGRG-----------------------------  408 (453)
T ss_dssp             TTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECBTTT-----------------------------
T ss_pred             eeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeEEeCCC-----------------------------
Confidence            7788888863                   1235677787877899774321                             


Q ss_pred             eEEEEec--cCChHHHHHHHHHHHhc
Q 021783          281 LVRISVG--IEDVNDLISDLDKALRT  304 (307)
Q Consensus       281 ~iRis~~--~~~~~~~i~~l~~~l~~  304 (307)
                      .+|++..  .+++++.++.|.+++++
T Consensus       409 ~~~l~~~~t~~~i~~~l~~l~~~l~~  434 (453)
T 2cy8_A          409 SVFLSAQHEREHVEHLVTTFDRVLDR  434 (453)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CEEeeccCCHHHHHHHHHHHHHHHHH
Confidence            1555432  26888888888887753

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.76  E-value=3.1e-18  Score=152.38  Aligned_cols=242  Identities=14%  Similarity=0.110  Sum_probs=146.9

Q ss_pred             CCeEEEcCCCCcchHHHHhhhc----------ccCCcEEEEecCCC--hHH-------------HHhhcC---CCceEEE
Q 021783           14 GEEIVAGDDLYGGTDRLLSRVT----------PKTGVVVKRVNTCD--LDE-------------VASAIG---PWTKLVW   65 (307)
Q Consensus        14 gd~Vlv~~~~~~~~~~~~~~~~----------~~~g~~~~~v~~~d--~~~-------------l~~~l~---~~~~~v~   65 (307)
                      ||+|++.++.|.+.........          .....+++.+|.+|  .+.             |++.++   +++++|+
T Consensus       157 ~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi  236 (449)
T 2cjg_A          157 GTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFV  236 (449)
T ss_dssp             CCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEE
T ss_pred             CCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEE
Confidence            8999999999987542211111          11123667777766  433             888874   6889999


Q ss_pred             EeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCcCC---ccC--CCccEEEeccccccccCCCceeEEEE
Q 021783           66 VESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR---PLE--LGADIVMHSATKFIAGHSDVMAGVLA  135 (307)
Q Consensus        66 ~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~~~---~~~--~~~d~~~~s~~K~~~g~~g~~~G~~~  135 (307)
                      +++++||+|...+    +++|.++|++||+++|+|++|+ .+....   ...  ...|++  |++|++  +    +|+++
T Consensus       237 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l--~----iG~~~  308 (449)
T 2cjg_A          237 AEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIV--AFGKKT--Q----VCGVM  308 (449)
T ss_dssp             ECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGG--S----SEEEE
T ss_pred             EeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEE--EecCcc--c----EEEEE
Confidence            8888899997666    9999999999999999999998 322211   111  234654  688988  2    78888


Q ss_pred             EcChhHHHH-----HHHHHHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCc
Q 021783          136 VKGERLAKE-----LYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG  208 (307)
Q Consensus       136 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~  208 (307)
                      ++++ +.+.     ............++..+..+.++++.+..  ..++..++.+.+.+.|++...    .++..     
T Consensus       309 ~~~~-~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~----~~~~~-----  378 (449)
T 2cjg_A          309 AGRR-VDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAA----DFPAV-----  378 (449)
T ss_dssp             ECGG-GGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH----HSTTT-----
T ss_pred             ECHH-HhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh----hCCCc-----
Confidence            8865 3332     11011111223345556665566654322  233444555555555543200    00100     


Q ss_pred             hHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc
Q 021783          209 HELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  288 (307)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~  288 (307)
                      +    ...++.+.++.+.+.+......+.+.|.++||.++.++                           ++++|++++.
T Consensus       379 ~----~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g---------------------------~~~iRi~~~~  427 (449)
T 2cjg_A          379 V----LDPRGRGLMCAFSLPTTADRDELIRQLWQRAVIVLPAG---------------------------ADTVRFRPPL  427 (449)
T ss_dssp             S----EEEEEETTEEEEECSSHHHHHHHHHHHHHTTEECEEET---------------------------TTEEEECCCT
T ss_pred             e----eeEeeccEEEEEEECChHHHHHHHHHHHHCCeEEecCC---------------------------CCEEEEECCC
Confidence            0    00123477888888765446778888877888776532                           3569998765


Q ss_pred             ----CChHHHHHHHHHHHhc
Q 021783          289 ----EDVNDLISDLDKALRT  304 (307)
Q Consensus       289 ----~~~~~~i~~l~~~l~~  304 (307)
                          +++++.++.|.+++++
T Consensus       428 ~~t~e~i~~~l~~l~~~l~~  447 (449)
T 2cjg_A          428 TVSTAEIDAAIAAVRSALPV  447 (449)
T ss_dssp             TCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHH
Confidence                6777777777777654

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.76  E-value=3.1e-18  Score=151.59  Aligned_cols=246  Identities=15%  Similarity=0.094  Sum_probs=152.6

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhcccCC-------------------cEEEEecCCChHHHHhhcC---CCceEEEEeCCC
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTPKTG-------------------VVVKRVNTCDLDEVASAIG---PWTKLVWVESPT   70 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~~~g-------------------~~~~~v~~~d~~~l~~~l~---~~~~~v~~~~~~   70 (307)
                      ++++|++.++.|.+...   ......|                   .+++.++.+|++++++.+.   +++++|++++++
T Consensus       134 ~~~~vi~~~~~yhg~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~  210 (429)
T 3k28_A          134 GRNKILKFIGCYHGHGD---SLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVA  210 (429)
T ss_dssp             TCCEEEEEETCCCCSCG---GGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSB
T ss_pred             CCCEEEEECCCcCCCcH---HHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCC
Confidence            67899998888865441   1111111                   1456667779999999886   567888888888


Q ss_pred             CCcccccc----HHHHHHHHHHcCCEEEEeCccCCCCcCC---ccCCCccEEEeccccccccCCCceeEEEEEcChhHHH
Q 021783           71 NPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLSR---PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        71 n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~~---~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~  143 (307)
                      |++|.+.+    +++|.++|++||+++|+||+|.......   ...++....+.++||.++ . |+++|+++++++ +.+
T Consensus       211 ~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t~sK~~~-~-G~~iG~~~~~~~-~~~  287 (429)
T 3k28_A          211 GNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYGVTPDLTCLGKVIG-G-GLPVGAYGGKAE-IMR  287 (429)
T ss_dssp             CTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSSTTHHHHHHTCCCSEEEECGGGG-T-TSCCEEEEECHH-HHT
T ss_pred             CCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchHHHHhCCCCceehhhhhhc-C-CCCeEEEEEcHH-HHh
Confidence            88898887    9999999999999999999996321101   112233333457899994 3 788999999754 433


Q ss_pred             HHHHHH---HhcCCCCChhhHHHHhhccccH-HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCC
Q 021783          144 ELYFLQ---NAEGSGLAPFDCWICLRGVKTM-ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  219 (307)
Q Consensus       144 ~~~~~~---~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (307)
                      .+....   .......++..+..+.++++.. +...++..++.+.+.+.|++...    .++...          ..++.
T Consensus       288 ~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~l~~~L~~~~~----~~~~~~----------~~~~~  353 (429)
T 3k28_A          288 QVAPSGPIYQAGTLSGNPLAMAAGYETLVQLTPESYVEFERKAEMLEAGLRKAAE----KHGIPH----------HINRA  353 (429)
T ss_dssp             TBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH----HTTCCC----------EEEEE
T ss_pred             hhccCCCccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hCCCCE----------EEEee
Confidence            332211   1112234455555555555422 34455556666666666654210    000000          01224


Q ss_pred             CceEEEEeC-------------CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEe
Q 021783          220 GSVLSFLTG-------------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  286 (307)
Q Consensus       220 ~~~~~~~~~-------------~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~  286 (307)
                      +.++++.+.             +......+.+.+.++||.++.+..                           +.+|+++
T Consensus       354 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------------~~~r~~~  406 (429)
T 3k28_A          354 GSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQF---------------------------EGLFLST  406 (429)
T ss_dssp             TTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT---------------------------SCBCCCT
T ss_pred             ccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCCC---------------------------CCEEEEC
Confidence            667777652             223356777888888998876532                           1266655


Q ss_pred             c--cCChHHHHHHHHHHHhcC
Q 021783          287 G--IEDVNDLISDLDKALRTG  305 (307)
Q Consensus       287 ~--~~~~~~~i~~l~~~l~~~  305 (307)
                      .  .+++++.++.|.++++++
T Consensus       407 ~~t~e~i~~~l~~l~~~l~~~  427 (429)
T 3k28_A          407 VHSDADIEATIAAAEIAMSKL  427 (429)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHH
Confidence            3  278899999999988765

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.76  E-value=3.9e-18  Score=151.81  Aligned_cols=245  Identities=13%  Similarity=0.109  Sum_probs=140.3

Q ss_pred             CCeEEEcCCCCcchHHHHhhhcc---------cCCcEEEEecCCC----------------hHHHHhhcC---CCceEEE
Q 021783           14 GEEIVAGDDLYGGTDRLLSRVTP---------KTGVVVKRVNTCD----------------LDEVASAIG---PWTKLVW   65 (307)
Q Consensus        14 gd~Vlv~~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~d----------------~~~l~~~l~---~~~~~v~   65 (307)
                      +|+|++.++.|.+..........         .....+..++..+                +++|++.+.   +++++|+
T Consensus       136 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi  215 (448)
T 3dod_A          136 KQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALS  215 (448)
T ss_dssp             CCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEE
T ss_pred             CCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEE
Confidence            49999999999765522111100         0011233444332                788998886   5678888


Q ss_pred             EeCCC-CCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCcC---CccCCCccEEEeccccccccCCC-ceeEEEE
Q 021783           66 VESPT-NPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLELGADIVMHSATKFIAGHSD-VMAGVLA  135 (307)
Q Consensus        66 ~~~~~-n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~~~~~d~~~~s~~K~~~g~~g-~~~G~~~  135 (307)
                      ++.++ |++|...+    +++|.++|++||+++|+||+|+ .+...   ....++....+.+++|.+++  | +++|+++
T Consensus       216 ~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~sK~l~~--G~~~ig~v~  293 (448)
T 3dod_A          216 IESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITG--GYLPIAVTF  293 (448)
T ss_dssp             EESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGT--TSSCCEEEE
T ss_pred             EeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEEecccccC--CcCceEEEE
Confidence            88887 88998775    9999999999999999999997 32211   12233433334468899953  6 5899999


Q ss_pred             EcChhHHHHHHH-------HHHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCccEEecCCCCCC
Q 021783          136 VKGERLAKELYF-------LQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH  206 (307)
Q Consensus       136 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~  206 (307)
                      ++++ +.+.+..       .........++..+..+.++++.+..  ..++..++.+.+.+.+++..           .+
T Consensus       294 ~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~l~-----------~~  361 (448)
T 3dod_A          294 ATED-IYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLH-----------AL  361 (448)
T ss_dssp             EEHH-HHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHT-----------TS
T ss_pred             ECHH-HHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHh-----------cC
Confidence            9854 4443322       11112233455666666666654322  23444555555555554311           11


Q ss_pred             CchHHHhhhccCCCceEEEEeCCHHH-----------HHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhc
Q 021783          207 PGHELHYSQAKGAGSVLSFLTGSLAL-----------SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQAR  275 (307)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~  275 (307)
                      +.+    ...++.+.++++.+.....           ...+.+.+.++||.+.++.                        
T Consensus       362 ~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------------------------  413 (448)
T 3dod_A          362 PHV----GDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLG------------------------  413 (448)
T ss_dssp             TTE----EEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEET------------------------
T ss_pred             CCe----EEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEeccC------------------------
Confidence            100    0112346788887743211           3567777777888776431                        


Q ss_pred             CCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          276 GLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       276 ~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                          +++|++++.    +++++.++.|.+++++
T Consensus       414 ----~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  442 (448)
T 3dod_A          414 ----DVIAFLPPLASTAEELSEMVAIMKQAIHE  442 (448)
T ss_dssp             ----TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ----CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                359997654    6788888888877754

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.75  E-value=2.1e-17  Score=147.48  Aligned_cols=242  Identities=13%  Similarity=0.090  Sum_probs=145.8

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhcc---------c--CCcEEEEecC----C---C--------hHHHHhhcC----CCce
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTP---------K--TGVVVKRVNT----C---D--------LDEVASAIG----PWTK   62 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~---------~--~g~~~~~v~~----~---d--------~~~l~~~l~----~~~~   62 (307)
                      ++++|++.++.|.++.........         .  .+...+.+|.    +   |        +++|++.+.    ++++
T Consensus       142 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~  221 (459)
T 4a6r_A          142 EKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVA  221 (459)
T ss_dssp             TCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEE
T ss_pred             CCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence            579999999999876533221111         1  1333333332    1   2        788888875    4677


Q ss_pred             EEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCcC---CccCCC--ccEEEeccccccccCCCceeE
Q 021783           63 LVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLELG--ADIVMHSATKFIAGHSDVMAG  132 (307)
Q Consensus        63 ~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~~~~--~d~~~~s~~K~~~g~~g~~~G  132 (307)
                      +|+++.+++++|...+    +++|.++|++||+++|+||+|. .+...   ....++  .|++  +++|.+++ +++++|
T Consensus       222 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~--t~sK~l~g-g~~~lg  298 (459)
T 4a6r_A          222 AFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLF--TAAKGLSS-GYLPIG  298 (459)
T ss_dssp             EEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT-TSSCCE
T ss_pred             EEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCee--ehhhhhcC-CCCCcc
Confidence            8888888888888776    9999999999999999999997 22221   111223  4554  57899853 447799


Q ss_pred             EEEEcChhHHHHHH---HHHHhcCCCCChhhHHHHhhccccHHH--HHHHHH-HHHHHHHHHH-h---cCCCccEEecCC
Q 021783          133 VLAVKGERLAKELY---FLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQ-DNAQKIAEFL-A---SHPRVKKVNYAG  202 (307)
Q Consensus       133 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~-~~~~~l~~~l-~---~~~~~~~~~~~~  202 (307)
                      +++++++ +.+.+.   ..........++..+..+.++++.+..  ..++.. +..+.+.+.+ +   .++.+..     
T Consensus       299 ~v~~~~~-i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----  372 (459)
T 4a6r_A          299 AVFVGKR-VAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDD-----  372 (459)
T ss_dssp             EEEECHH-HHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEE-----
T ss_pred             ceeeCHH-HHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEE-----
Confidence            9999755 544443   111122223445556666666653321  233334 4444555554 2   2221111     


Q ss_pred             CCCCCchHHHhhhccCCCceEEEEeCCH-----------HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHH
Q 021783          203 LPEHPGHELHYSQAKGAGSVLSFLTGSL-----------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEV  271 (307)
Q Consensus       203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~  271 (307)
                                   .++.+.++.+.+...           .....+.+.+.++||.+++++                    
T Consensus       373 -------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g--------------------  419 (459)
T 4a6r_A          373 -------------VRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACG--------------------  419 (459)
T ss_dssp             -------------EEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEET--------------------
T ss_pred             -------------EEEEEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCC--------------------
Confidence                         123466777776421           125677777777888776522                    


Q ss_pred             HHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          272 RQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       272 ~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                              +++||+++.    +++++.++.|.+++++
T Consensus       420 --------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  448 (459)
T 4a6r_A          420 --------DHIVSAPPLVMTRAEVDEMLAVAERCLEE  448 (459)
T ss_dssp             --------TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             --------CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                    349999754    6788888888777754

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.75  E-value=1.2e-17  Score=148.71  Aligned_cols=246  Identities=17%  Similarity=0.175  Sum_probs=146.3

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhc----------ccCCcEEEEecCC------------------ChHHHHhh----cC-C
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVT----------PKTGVVVKRVNTC------------------DLDEVASA----IG-P   59 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~----------~~~g~~~~~v~~~------------------d~~~l~~~----l~-~   59 (307)
                      .+++|++.+++|.+.........          ......+..++..                  +++.+++.    +. +
T Consensus       147 g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~  226 (451)
T 3oks_A          147 HKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGAD  226 (451)
T ss_dssp             CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGG
T ss_pred             CCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCC
Confidence            45899999999886653322111          1111234445543                  13333333    33 4


Q ss_pred             CceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCc---CCccCCCccEEEeccccccccCCCcee
Q 021783           60 WTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVL---SRPLELGADIVMHSATKFIAGHSDVMA  131 (307)
Q Consensus        60 ~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~---~~~~~~~~d~~~~s~~K~~~g~~g~~~  131 (307)
                      ++++|+++..+++.|...+    +++|.++|++||+++|+||+|. .+..   .....++....+.|++|.+++  |+++
T Consensus       227 ~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~--G~~i  304 (451)
T 3oks_A          227 NLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAG--GLPL  304 (451)
T ss_dssp             GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGT--TSSC
T ss_pred             CEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhhhhC--Ccce
Confidence            5667777776777777765    9999999999999999999997 2221   122233433333478999953  7899


Q ss_pred             EEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhc----CCCccEEecCCCCC
Q 021783          132 GVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPE  205 (307)
Q Consensus       132 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~----~~~~~~~~~~~l~~  205 (307)
                      |+++++++ +.+.+...........++..+..+.+.++.+..  ..++..+..+.+.+.+++    ++.+.         
T Consensus       305 G~v~~~~~-~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~---------  374 (451)
T 3oks_A          305 SAVTGRAE-IMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIG---------  374 (451)
T ss_dssp             EEEEEEHH-HHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEE---------
T ss_pred             EEEEECHH-HHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeE---------
Confidence            99998754 433332222222334555666666666654322  233344444444444442    22111         


Q ss_pred             CCchHHHhhhccCCCceEEEEeC-------CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCC
Q 021783          206 HPGHELHYSQAKGAGSVLSFLTG-------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT  278 (307)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~  278 (307)
                               ..++.+.++++.+.       +.+....+.+.+.++||.+.++..                         .
T Consensus       375 ---------~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------~  420 (451)
T 3oks_A          375 ---------DVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGT-------------------------Y  420 (451)
T ss_dssp             ---------EEEEETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECT-------------------------T
T ss_pred             ---------EEEEeeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCC-------------------------C
Confidence                     11334678888772       344577888888888998765432                         1


Q ss_pred             CCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          279 EDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       279 ~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                      .+++|++++.    +++++.++.|.+++++
T Consensus       421 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  450 (451)
T 3oks_A          421 GNVVRFLPPLSIGDDLLNEGLDVLEEVLRG  450 (451)
T ss_dssp             SCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            3469998764    6777888888877764

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.75  E-value=1.3e-18  Score=153.94  Aligned_cols=248  Identities=13%  Similarity=0.116  Sum_probs=148.2

Q ss_pred             CCCeEEEcCCCCcchHHHHhhh----------cccCC------cEEEEecCCChHHHHhhcCC---CceEEEEeCCCCCc
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRV----------TPKTG------VVVKRVNTCDLDEVASAIGP---WTKLVWVESPTNPR   73 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~----------~~~~g------~~~~~v~~~d~~~l~~~l~~---~~~~v~~~~~~n~t   73 (307)
                      .+++|++.++.|++........          -...|      ..+..++.+|++++++.+++   ++++|++++++|++
T Consensus       133 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~  212 (427)
T 3fq8_A          133 GRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNS  212 (427)
T ss_dssp             CCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTT
T ss_pred             CCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCC
Confidence            4678998888887643110000          00111      13666777899999999863   78899999999999


Q ss_pred             ccccc----HHHHHHHHHHcCCEEEEeCccCC---CCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH
Q 021783           74 QQICD----IRKIAEMAHAHGALLLVDNSIMS---PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  146 (307)
Q Consensus        74 G~~~~----~~~l~~~~~~~~~~li~D~a~~~---~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~  146 (307)
                      |.+.+    +++|.++|++||+++|+|++|+.   +.......++...-+.|+||.++  +|+++|+++++++ +.+.+.
T Consensus       213 G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t~sK~~~--~G~~~G~~~~~~~-~~~~~~  289 (427)
T 3fq8_A          213 GFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKFGVTPDLTTLGKIIG--GGLPVGAYGGKRE-IMQLVA  289 (427)
T ss_dssp             SCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHTTCCCSEEEECGGGG--TTSSCEEEEECHH-HHTTBT
T ss_pred             CCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchhhHhcCCCCChhhhhhhhh--CCcceEEEEEcHH-HHHhhc
Confidence            99998    99999999999999999999972   11111112333223467889995  4889999988754 433332


Q ss_pred             HHHH-hcC--CCCChhhHHHHhhccccH--HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCc
Q 021783          147 FLQN-AEG--SGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS  221 (307)
Q Consensus       147 ~~~~-~~~--~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (307)
                      .... ..+  ...++..+..+.++++.+  +...++..++.+.+.+.+++...  .  .. +.         ...++.+.
T Consensus       290 ~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~--~~-~~---------~~~~~~g~  355 (427)
T 3fq8_A          290 PAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQ--E--TG-HA---------ACGGQVSG  355 (427)
T ss_dssp             TTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHH--H--TT-CC---------CEEEEETT
T ss_pred             cCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH--h--CC-CC---------eEEEEeee
Confidence            2111 111  223455555555555322  22334445555555555543210  0  00 00         00122466


Q ss_pred             eEEEEeCC-------------HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec-
Q 021783          222 VLSFLTGS-------------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-  287 (307)
Q Consensus       222 ~~~~~~~~-------------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~-  287 (307)
                      ++++.+..             .+....+.+.+.++||.++.+...                           ++|++.. 
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~~---------------------------r~~~~~~~  408 (427)
T 3fq8_A          356 MFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFE---------------------------AGFTSLAH  408 (427)
T ss_dssp             EEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTS---------------------------CEECCTTC
T ss_pred             EEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCCC---------------------------CEEeeCcC
Confidence            77777632             222467777888889988875531                           1444332 


Q ss_pred             -cCChHHHHHHHHHHHhc
Q 021783          288 -IEDVNDLISDLDKALRT  304 (307)
Q Consensus       288 -~~~~~~~i~~l~~~l~~  304 (307)
                       .+++++.++.|.+++++
T Consensus       409 t~e~i~~~l~~l~~~l~~  426 (427)
T 3fq8_A          409 TEEDIDATLAAARTVMSA  426 (427)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence             26788888888888765

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.74  E-value=1.1e-17  Score=148.09  Aligned_cols=249  Identities=13%  Similarity=0.085  Sum_probs=147.3

Q ss_pred             CCCCeEEEcCCCCcchHHHHh----------------hhcccCCcEEEEecCCChHHHHhhcC---CCceEEEEeCCCCC
Q 021783           12 GTGEEIVAGDDLYGGTDRLLS----------------RVTPKTGVVVKRVNTCDLDEVASAIG---PWTKLVWVESPTNP   72 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~~~~~~~----------------~~~~~~g~~~~~v~~~d~~~l~~~l~---~~~~~v~~~~~~n~   72 (307)
                      .++++|++.++.|.+......                .........+..++.+|++++++.++   +++++|++++++++
T Consensus       133 ~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~  212 (429)
T 4e77_A          133 TGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGN  212 (429)
T ss_dssp             HCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCT
T ss_pred             hCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCC
Confidence            357789988888876652100                00011122456677789999999886   46778887777777


Q ss_pred             cccccc----HHHHHHHHHHcCCEEEEeCccC---CCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHH
Q 021783           73 RQQICD----IRKIAEMAHAHGALLLVDNSIM---SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  145 (307)
Q Consensus        73 tG~~~~----~~~l~~~~~~~~~~li~D~a~~---~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~  145 (307)
                      +|.+.+    +++|.++|++||+++|+|++|+   .+.......++.+.-+.|++|.++  +|+++|+++++++ +.+.+
T Consensus       213 ~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~~~~~~~~~~~pdi~t~sK~~~--~G~~~G~~~~~~~-~~~~l  289 (429)
T 4e77_A          213 MNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYHVIPDLTCLGKIIG--GGMPVGAFGGRRE-VMNAL  289 (429)
T ss_dssp             TSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBTTCHHHHTTCCCSEEEEEGGGG--TTSCCEEEEECHH-HHTTB
T ss_pred             CCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCcchHHHhcCCCCCeeeeccccc--CCCCeEEEEECHH-HHHHh
Confidence            788877    9999999999999999999998   222221222333222358899995  4788999998754 43333


Q ss_pred             HHHH---HhcCCCCChhhHHHHhhccccH--HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCC
Q 021783          146 YFLQ---NAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG  220 (307)
Q Consensus       146 ~~~~---~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  220 (307)
                      ....   .......++..+..+.++++.+  ....++..++.+.+.+.|++...  .  .+...          ..++.+
T Consensus       290 ~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~--~~~~~----------~~~~~g  355 (429)
T 4e77_A          290 APTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAK--E--ENIPL----------VVNHVG  355 (429)
T ss_dssp             TTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHH--H--TTCCC----------EEEEET
T ss_pred             ccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH--h--CCCce----------EEEEee
Confidence            2110   1112234555566555555432  22334445555555555543200  0  00000          112346


Q ss_pred             ceEEEEeCCH--------------HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEe
Q 021783          221 SVLSFLTGSL--------------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  286 (307)
Q Consensus       221 ~~~~~~~~~~--------------~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~  286 (307)
                      .++++.+.+.              .....+.+.+..+||.++.+...                           .+|++.
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~---------------------------~~~~~~  408 (429)
T 4e77_A          356 GMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAFE---------------------------AGFMSL  408 (429)
T ss_dssp             TEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSSTTS---------------------------CEECCT
T ss_pred             eEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecCCC---------------------------CEEEec
Confidence            7777777432              23477888888889988876431                           144443


Q ss_pred             c--cCChHHHHHHHHHHHhc
Q 021783          287 G--IEDVNDLISDLDKALRT  304 (307)
Q Consensus       287 ~--~~~~~~~i~~l~~~l~~  304 (307)
                      .  .+++++.++.|.+++++
T Consensus       409 ~~t~e~i~~~l~~l~~~l~~  428 (429)
T 4e77_A          409 AHSNEDIQKTVNAARRCFAK  428 (429)
T ss_dssp             TCCHHHHHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHHHHHh
Confidence            2  27888888888888765

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.74  E-value=2.7e-17  Score=147.14  Aligned_cols=264  Identities=16%  Similarity=0.106  Sum_probs=146.9

Q ss_pred             HHHHHhcCC-----C----CeEEEcCCCCcchHHHHhhhcccCCcEEEEe------c------C---CChHHHHhhcC--
Q 021783            5 AAVTHLLGT-----G----EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV------N------T---CDLDEVASAIG--   58 (307)
Q Consensus         5 ~~~~~~~~~-----g----d~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v------~------~---~d~~~l~~~l~--   58 (307)
                      .++..++++     |    |+|+++ +.|......   .....|+.+...      +      .   .|+++|+++++  
T Consensus       104 ~al~~~~~~~~~~~G~~~~d~Ii~~-~~h~~t~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~  179 (467)
T 2oqx_A          104 IYIPVLIKKREQEKGLDRSKMVAFS-NYFFDTTQG---HSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEV  179 (467)
T ss_dssp             HHHHHHHHHHHHHHCCCTTTCEEEE-SSCCHHHHH---HHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHH
T ss_pred             HHHHHHhccccccCCCCccceEEec-ccccccchh---hhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhc
Confidence            555556677     8    998887 455443221   112234444322      1      1   27899999997  


Q ss_pred             --CCceEEEEeCCCCCc-ccccc---HHHHHHHHHHcCCEEEEeCccCC-----------CCcC-CccC------CCccE
Q 021783           59 --PWTKLVWVESPTNPR-QQICD---IRKIAEMAHAHGALLLVDNSIMS-----------PVLS-RPLE------LGADI  114 (307)
Q Consensus        59 --~~~~~v~~~~~~n~t-G~~~~---~~~l~~~~~~~~~~li~D~a~~~-----------~~~~-~~~~------~~~d~  114 (307)
                        +++++|++++++||+ |.+++   +++|.++|++||+++|+|++++.           +... ....      ...|+
T Consensus       180 ~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~  259 (467)
T 2oqx_A          180 GPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADM  259 (467)
T ss_dssp             CGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSE
T ss_pred             CCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCe
Confidence              379999999999998 77754   88999999999999999977654           1111 1111      23678


Q ss_pred             EEeccccccccCCCceeEEEEEcCh---hHHHHHHHHH-HhcCC----CCChhhHHHHhhcccc-H-HHHHHHHHHHHHH
Q 021783          115 VMHSATKFIAGHSDVMAGVLAVKGE---RLAKELYFLQ-NAEGS----GLAPFDCWICLRGVKT-M-ALRVEKQQDNAQK  184 (307)
Q Consensus       115 ~~~s~~K~~~g~~g~~~G~~~~~~~---~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~  184 (307)
                      ++.|+||+++.+-   +|+++++++   .....+.... ...+.    ............+++. + ...+++..++.+.
T Consensus       260 ~~~s~sK~~g~~~---Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~  336 (467)
T 2oqx_A          260 LAMSAKKDAMVPM---GGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQY  336 (467)
T ss_dssp             EEEESSSTTCCSS---CEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             EEEecccccCCCC---ceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHHHHH
Confidence            8999999995432   588888766   2222222221 11111    1111111111111111 1 1234445566777


Q ss_pred             HHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC----C---HHH-HHHHHhcC-CcceeecCCCCccce
Q 021783          185 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG----S---LAL-SKHVVETT-KYFSITVSFGSVKSL  255 (307)
Q Consensus       185 l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~-~~~~~~~l-~~~gi~v~~g~~~~~  255 (307)
                      +.+.|++. ++.. . +               . .+.++++.+.    +   .+. ...+.+.| ...||.+++++.+..
T Consensus       337 l~~~L~~~-~~~~-~-~---------------~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~  397 (467)
T 2oqx_A          337 LVDGLEEI-GVVC-Q-Q---------------A-GGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLL  397 (467)
T ss_dssp             HHHHHHHT-TCCE-E-E---------------E-CSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHH
T ss_pred             HHHHHHHC-CCee-e-c---------------C-CceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccc
Confidence            77777654 2211 1 1               1 2445666652    1   111 45567777 778998876443110


Q ss_pred             eecccccCCCCCcHHHHHhcCCCCCeEEEEeccC-----ChHHHHHHHHHHHhc
Q 021783          256 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE-----DVNDLISDLDKALRT  304 (307)
Q Consensus       256 ~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~-----~~~~~i~~l~~~l~~  304 (307)
                      -..|.   + ..      .....++++|++++..     ++++.++.|.+++++
T Consensus       398 ~~~~~---~-g~------~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~  441 (467)
T 2oqx_A          398 GRDPK---T-GK------QLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_dssp             CBCTT---T-CS------BCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHS
T ss_pred             ccccc---c-cc------cccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence            00000   0 00      0001247899999854     777777777777654

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.74  E-value=3e-17  Score=146.16  Aligned_cols=246  Identities=16%  Similarity=0.194  Sum_probs=147.1

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhcc----------cCCcEEEEecCC----C-------------hHHHHhhcCC-CceEE
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTP----------KTGVVVKRVNTC----D-------------LDEVASAIGP-WTKLV   64 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~----------~~g~~~~~v~~~----d-------------~~~l~~~l~~-~~~~v   64 (307)
                      .+++|++.+++|.+..........          .....+..++..    |             ++.+++.+.+ ++++|
T Consensus       150 g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aav  229 (453)
T 4ffc_A          150 GRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAI  229 (453)
T ss_dssp             CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred             CCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEE
Confidence            468999999998866533222111          111134444443    3             3667777764 45566


Q ss_pred             EEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCcC---CccCCCccEEEeccccccccCCCceeEEEEE
Q 021783           65 WVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAV  136 (307)
Q Consensus        65 ~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~  136 (307)
                      +++..+++.|...+    +++|.++|++||+++|+||+|. .+...   ....++....+.+++|.++ . |+++|++++
T Consensus       230 i~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~-~-G~~~G~~~~  307 (453)
T 4ffc_A          230 IIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIA-G-GMPLSAVTG  307 (453)
T ss_dssp             EECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGG-T-TSSCEEEEE
T ss_pred             EEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhhhc-C-CcCeEEEEE
Confidence            66655555566665    9999999999999999999996 22221   1222344333557889994 4 789999998


Q ss_pred             cChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhc----CCCccEEecCCCCCCCchH
Q 021783          137 KGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHE  210 (307)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~----~~~~~~~~~~~l~~~~~~~  210 (307)
                      +++ +.+.+...........++..+..+.+.++.+..  ..++..+..+.+.+.+++    .+.+.              
T Consensus       308 ~~~-i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--------------  372 (453)
T 4ffc_A          308 RAE-LMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIG--------------  372 (453)
T ss_dssp             EHH-HHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEE--------------
T ss_pred             CHH-HHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeE--------------
Confidence            754 433333222222334455666666666553321  233334444444444432    22111              


Q ss_pred             HHhhhccCCCceEEEEeC-------CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEE
Q 021783          211 LHYSQAKGAGSVLSFLTG-------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVR  283 (307)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iR  283 (307)
                          ..++.+.++++.+.       +.+....+.+.+.++||.+.++..                         ..+++|
T Consensus       373 ----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------~~~~iR  423 (453)
T 4ffc_A          373 ----EVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGT-------------------------FGNVIR  423 (453)
T ss_dssp             ----EEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECT-------------------------TSCEEE
T ss_pred             ----EEEeeceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCC-------------------------CCCEEE
Confidence                11334678888772       344577888888888998876442                         134699


Q ss_pred             EEecc----CChHHHHHHHHHHHhc
Q 021783          284 ISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       284 is~~~----~~~~~~i~~l~~~l~~  304 (307)
                      ++++.    +++++.++.|.+++++
T Consensus       424 i~~~~~~t~e~i~~~l~~l~~~l~~  448 (453)
T 4ffc_A          424 LLPPLVIGDDLLDEGITALSDIIRA  448 (453)
T ss_dssp             ECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHH
Confidence            98764    6788888888887764

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.72  E-value=6.1e-17  Score=149.43  Aligned_cols=180  Identities=11%  Similarity=0.025  Sum_probs=127.7

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC---------------ChHHHHhhcC--CCce---EE
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---------------DLDEVASAIG--PWTK---LV   64 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---------------d~~~l~~~l~--~~~~---~v   64 (307)
                      +++.++++|||+|+++.++|.++.    ..+...|+++++++..               |++++++++.  ++++   ++
T Consensus       226 ~ai~al~~pGD~VLv~r~~H~S~~----~~l~lsGa~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~v  301 (715)
T 3n75_A          226 IVGMYSAPAGSTILIDRNCHKSLT----HLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHA  301 (715)
T ss_dssp             HHHHHHCCTTCEEEEESSCCHHHH----HHHHHSCCEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEE
T ss_pred             HHHHHhCCCCCEEEECCCccHHHH----HHHHHcCCEEEEEeccccccccccCcccccCCHHHHHHHHhhCcCccCceEE
Confidence            677789999999999999999988    5567889999998852               7899999986  3444   89


Q ss_pred             EEeCCCCCccccccHHHHHHHHHHcCCEEEEeCccCCCC-----cC--CccCCC--ccEE---EeccccccccCCCceeE
Q 021783           65 WVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV-----LS--RPLELG--ADIV---MHSATKFIAGHSDVMAG  132 (307)
Q Consensus        65 ~~~~~~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~-----~~--~~~~~~--~d~~---~~s~~K~~~g~~g~~~G  132 (307)
                      ++++| |++|.+.|+++|.++|++++  +++|+||+.+.     .+  .....+  .|++   ++|+||+++|+++  +|
T Consensus       302 ivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltq--gs  376 (715)
T 3n75_A          302 VITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQ--AS  376 (715)
T ss_dssp             EEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTT--CE
T ss_pred             EEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCccccccccccCcCCCEEEEEEecccccccCCCC--ee
Confidence            99999 89999999999999998764  79999998653     11  112222  5665   9999999988766  89


Q ss_pred             EEEEcChhHHHHHHHHHHhcC-CCCChhhHHHHhhccc-----cHHHHHHHHHHHHHHHHHHHhcCC
Q 021783          133 VLAVKGERLAKELYFLQNAEG-SGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLASHP  193 (307)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~  193 (307)
                      ++.++++.....+........ ++++.........+++     .-...+++..++++.+++.+++.+
T Consensus       377 ~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~  443 (715)
T 3n75_A          377 MIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLR  443 (715)
T ss_dssp             EEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhh
Confidence            999986643444444443333 3333332222222332     123456677777777777776543

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.72  E-value=3.4e-17  Score=146.66  Aligned_cols=244  Identities=18%  Similarity=0.196  Sum_probs=150.2

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhcc-----------cCCcEEEEecC-----C-C--------hHHHHhhcC----CCceE
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTP-----------KTGVVVKRVNT-----C-D--------LDEVASAIG----PWTKL   63 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~-----------~~g~~~~~v~~-----~-d--------~~~l~~~l~----~~~~~   63 (307)
                      .+++|++.++.|.+..........           ..|...+..|.     + |        +++|++.+.    +++++
T Consensus       145 ~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aa  224 (476)
T 3i5t_A          145 QKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAA  224 (476)
T ss_dssp             TCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEE
T ss_pred             CCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence            367999999999876533211111           12233333332     1 1        778888875    56789


Q ss_pred             EEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCcC---Ccc-CCC--ccEEEeccccccccCCC-cee
Q 021783           64 VWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPL-ELG--ADIVMHSATKFIAGHSD-VMA  131 (307)
Q Consensus        64 v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~-~~~--~d~~~~s~~K~~~g~~g-~~~  131 (307)
                      |+++++++++|...+    +++|.++|++||+++|+||+|+ .+...   ... .++  .|++  +++|.+++  | +++
T Consensus       225 vi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~--t~sK~l~~--G~~pl  300 (476)
T 3i5t_A          225 FLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDII--TFAKGVTS--GYVPL  300 (476)
T ss_dssp             EEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEE--EECGGGGT--TSSCC
T ss_pred             EEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcchh--hhhhhhcC--CCcCe
Confidence            999999999998665    9999999999999999999997 32221   112 333  4555  57899964  6 789


Q ss_pred             EEEEEcChhHHHHHHHH-------HHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCccEEecCC
Q 021783          132 GVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAG  202 (307)
Q Consensus       132 G~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  202 (307)
                      |+++++++ +.+.+...       ........++..+..+.++++.+..  ..++..++.+.+.+.|+...         
T Consensus       301 g~v~~~~~-i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~---------  370 (476)
T 3i5t_A          301 GGLAISEA-VLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLR---------  370 (476)
T ss_dssp             EEEEECHH-HHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTT---------
T ss_pred             EEEEECHH-HHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh---------
Confidence            99999754 54444322       1112234455666666666654432  23444555555666665321         


Q ss_pred             CCCCCchHHHhhhccCCCceEEEEeCCHH-----------HHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHH
Q 021783          203 LPEHPGHELHYSQAKGAGSVLSFLTGSLA-----------LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEV  271 (307)
Q Consensus       203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~  271 (307)
                        .+|.+.    ..++.+.++.+.+....           ....+.+.+.++|+.+++.                     
T Consensus       371 --~~~~v~----~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~---------------------  423 (476)
T 3i5t_A          371 --DLPGVA----ETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPL---------------------  423 (476)
T ss_dssp             --TSTTEE----EEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEE---------------------
T ss_pred             --cCCCeE----EEEecCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEec---------------------
Confidence              111111    11335778788774321           2566777777788876541                     


Q ss_pred             HHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          272 RQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       272 ~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                          |   +++||++++    +++++.++.|.+++++
T Consensus       424 ----g---~~iRi~p~l~~t~e~i~~~l~~l~~~l~~  453 (476)
T 3i5t_A          424 ----G---DLCVISPPLIISRAQIDEMVAIMRQAITE  453 (476)
T ss_dssp             ----T---TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ----C---CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                1   459999654    7888888888887753

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.71  E-value=2.7e-17  Score=147.08  Aligned_cols=245  Identities=16%  Similarity=0.120  Sum_probs=148.8

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhcc----------cCCcEEEEecC----C---C--------hHHHHhhcC----CCceE
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTP----------KTGVVVKRVNT----C---D--------LDEVASAIG----PWTKL   63 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~----------~~g~~~~~v~~----~---d--------~~~l~~~l~----~~~~~   63 (307)
                      ++++|++.++.|.+..........          ..++..+..|.    +   |        +++|++.+.    +++++
T Consensus       147 ~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aa  226 (472)
T 3hmu_A          147 EKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAA  226 (472)
T ss_dssp             TCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEE
T ss_pred             CCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence            478999999999876532211110          11333333222    1   1        778888875    56788


Q ss_pred             EEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCcC---CccCCC--ccEEEeccccccccCCCceeEE
Q 021783           64 VWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLELG--ADIVMHSATKFIAGHSDVMAGV  133 (307)
Q Consensus        64 v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~~~~--~d~~~~s~~K~~~g~~g~~~G~  133 (307)
                      |+++.+++++|.+.+    +++|.++|++||+++|+||+|. .|...   ....++  .|++  +++|.+++ .++++|+
T Consensus       227 vi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~--t~sK~l~g-g~~plG~  303 (472)
T 3hmu_A          227 FIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIM--TIAKGLSS-GYAPIGG  303 (472)
T ss_dssp             EEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEE--EECGGGTT-TSSCCEE
T ss_pred             EEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCcee--eechhhhc-CCcceEE
Confidence            889899999999886    9999999999999999999997 32221   111223  4555  57899854 3467899


Q ss_pred             EEEcChhHHHHHHHH--HHhcCCCCChhhHHHHhhccccHHH--HHHHHH-HHHHHHHHHHhcCCCccEEecCCCCCCCc
Q 021783          134 LAVKGERLAKELYFL--QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQ-DNAQKIAEFLASHPRVKKVNYAGLPEHPG  208 (307)
Q Consensus       134 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~l~~~~~  208 (307)
                      ++++++ +.+.+...  ........++..+..+.++++.++.  ..++.. ++.+.+.+.|+...           ..|.
T Consensus       304 v~~~~~-i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~-----------~~~~  371 (472)
T 3hmu_A          304 SIVCDE-VAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALT-----------DHPL  371 (472)
T ss_dssp             EEEEHH-HHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGG-----------GSTT
T ss_pred             EEECHH-HHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-----------cCCC
Confidence            999754 44444211  1111223455666666666654422  233444 45555666554321           0111


Q ss_pred             hHHHhhhccCCCceEEEEeCC------------HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcC
Q 021783          209 HELHYSQAKGAGSVLSFLTGS------------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG  276 (307)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~  276 (307)
                      +.    ..++.+.++.+.+..            ......+.+.+.++||.++.++                         
T Consensus       372 v~----~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-------------------------  422 (472)
T 3hmu_A          372 VG----EAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVG-------------------------  422 (472)
T ss_dssp             EE----EEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEET-------------------------
T ss_pred             eE----EEEecCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEecC-------------------------
Confidence            10    113357788888742            1225677777877888765421                         


Q ss_pred             CCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          277 LTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       277 ~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                         +++|+++.+    +++++.++.|.+++++
T Consensus       423 ---~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  451 (472)
T 3hmu_A          423 ---DRMIISPPLVITPAEIDEMFVRIRKSLDE  451 (472)
T ss_dssp             ---TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ---CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence               359999654    6788888888777753

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.71  E-value=8.2e-17  Score=142.24  Aligned_cols=220  Identities=16%  Similarity=0.132  Sum_probs=133.0

Q ss_pred             CCCCeEEEcCCCCcchHHHHhhhc----------ccCCc------EEEEecCCChHHHHhhcC---CCceEEEEeCCCCC
Q 021783           12 GTGEEIVAGDDLYGGTDRLLSRVT----------PKTGV------VVKRVNTCDLDEVASAIG---PWTKLVWVESPTNP   72 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~~~~~~~~~~----------~~~g~------~~~~v~~~d~~~l~~~l~---~~~~~v~~~~~~n~   72 (307)
                      .++++|++.+++|++.........          ...|+      ++..++.+|++++++.++   +++++|++++.+++
T Consensus       132 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~  211 (424)
T 2e7u_A          132 TGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGN  211 (424)
T ss_dssp             HCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCT
T ss_pred             hCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCC
Confidence            346889999999877542110000          01232      466777789999999886   46777777666666


Q ss_pred             cccccc----HHHHHHHHHHcCCEEEEeCccCCCCcCC---ccCCC--ccEEEeccccccccCCCceeEEEEEcChhHHH
Q 021783           73 RQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLSR---PLELG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        73 tG~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~~---~~~~~--~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~  143 (307)
                      +|.+.+    +++|.++ ++||+++|+|++|+......   ...++  .|+  .|++|+++ . |+++|+++++++ +.+
T Consensus       212 ~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di--~s~sK~l~-~-G~~~G~~~~~~~-~~~  285 (424)
T 2e7u_A          212 AGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAFGGATELLGLKPDL--VTLGKILG-G-GLPAAAYAGRRE-IME  285 (424)
T ss_dssp             TSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSSTTHHHHHHTCCCSE--EEECGGGG-T-TSSCEEEEECHH-HHT
T ss_pred             CCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccchhHHHHHhCCCcch--hhhhhhhh-C-CcceEEEEEcHH-HHh
Confidence            998887    9999999 99999999999998221111   11123  454  48999995 3 788999999854 433


Q ss_pred             HHHHHHH-hc--CCCCChhhHHHHhhccccHHH---HHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhcc
Q 021783          144 ELYFLQN-AE--GSGLAPFDCWICLRGVKTMAL---RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  217 (307)
Q Consensus       144 ~~~~~~~-~~--~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~  217 (307)
                      .+..... ..  ....++..+..+.+.++.+..   ..++..++.+.+.+.+++...  .  ++ +.       .  ..+
T Consensus       286 ~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~--~~-~~-------~--~~~  351 (424)
T 2e7u_A          286 KVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLK--E--KG-LP-------H--TVN  351 (424)
T ss_dssp             TBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHH--H--TT-CC-------C--EEE
T ss_pred             hhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH--h--CC-Cc-------e--EEE
Confidence            3322110 11  123445556666666654422   344455555555555553200  0  00 00       0  002


Q ss_pred             CCCceEEEEeCC-------------HHHHHHHHhcCCcceeecCCCC
Q 021783          218 GAGSVLSFLTGS-------------LALSKHVVETTKYFSITVSFGS  251 (307)
Q Consensus       218 ~~~~~~~~~~~~-------------~~~~~~~~~~l~~~gi~v~~g~  251 (307)
                      +.+.++++.+.+             ......+.+.+.++||.++.|.
T Consensus       352 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~  398 (424)
T 2e7u_A          352 RVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSN  398 (424)
T ss_dssp             EETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSS
T ss_pred             eeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccC
Confidence            246788888753             2336678888888899888764

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.49  E-value=3.9e-18  Score=151.18  Aligned_cols=251  Identities=13%  Similarity=0.082  Sum_probs=151.7

Q ss_pred             CCCCeEEEcCCCCcchHHHHhhhcccCCc--EEEEecCCChHHHHhhcC---CCceEEEEeCCCCCcccccc----HHHH
Q 021783           12 GTGEEIVAGDDLYGGTDRLLSRVTPKTGV--VVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKI   82 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~----~~~l   82 (307)
                      ..+++|++.+++|.+.......-....|+  .+..++.+|++++++.++   +++++|+++.+++++|.+.+    +++|
T Consensus       180 tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l  259 (465)
T 2yky_A          180 TGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLL  259 (465)
Confidence            35689999999887654221100012344  455667789999999997   68899999887777998776    9999


Q ss_pred             HHHHHHcCCEEEEeCccCCCCcC---CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH-----HHHhcCC
Q 021783           83 AEMAHAHGALLLVDNSIMSPVLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-----LQNAEGS  154 (307)
Q Consensus        83 ~~~~~~~~~~li~D~a~~~~~~~---~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~-----~~~~~~~  154 (307)
                      .++|++||+++|+|++|+ +...   ....+|....+.|++|++++  |+++|+++++++.. +.+..     .......
T Consensus       260 ~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~t~sK~lg~--G~piG~v~~~~~i~-~~l~~~~~g~~~~~~T~  335 (465)
T 2yky_A          260 RAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISADLTTLGKYIGG--GMSFGAFGGRRDLM-ERFDPARDGAFAHAGTF  335 (465)
Confidence            999999999999999999 5321   12223444445689999954  78899999986643 33332     1111222


Q ss_pred             CCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC-----
Q 021783          155 GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-----  229 (307)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----  229 (307)
                      ..++..+..+.+.++.+..  +.+.++..++.+++.+.-.  ..    ....+   +. ...++.|.++++.+.+     
T Consensus       336 ~~npla~aAa~aaL~~l~~--~~~~~~~~~~~~~l~~~L~--~~----~~~~~---~~-~~v~g~G~~~~i~~~~~~~~~  403 (465)
T 2yky_A          336 NNNILTMSAGHAALTQIYT--RQAASDLSASGDRFRANLN--RI----AVENQ---AP-LQFTGLGSLGTIHFSRAPIRS  403 (465)
Confidence            3344555555555654422  2233333333333332210  00    01111   00 0123457788887643     


Q ss_pred             --------HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHH
Q 021783          230 --------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA  301 (307)
Q Consensus       230 --------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~  301 (307)
                              .+....+.+.+.++||.+.++....    |                       -+....+++++.++.|.++
T Consensus       404 ~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~~~----~-----------------------s~~~t~edid~~l~~l~~~  456 (465)
T 2yky_A          404 AGDVRAADQQLKELFFFHMLRKGIYLAPRGMYA----L-----------------------SLEIADAGRDAFAEALADF  456 (465)
Confidence                    1125667888888999887654211    1                       1223347899999999888


Q ss_pred             HhcC
Q 021783          302 LRTG  305 (307)
Q Consensus       302 l~~~  305 (307)
                      ++++
T Consensus       457 l~~~  460 (465)
T 2yky_A          457 IGEQ  460 (465)
Confidence            7654

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.66  E-value=7.7e-15  Score=126.17  Aligned_cols=186  Identities=19%  Similarity=0.198  Sum_probs=118.2

Q ss_pred             cHHHHHHHhcCCCCeEEEcCCCCcchHHHHh----hhcccCCc--EEEEecC------CChHHHHhhcC-CCceEEEEeC
Q 021783            2 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLS----RVTPKTGV--VVKRVNT------CDLDEVASAIG-PWTKLVWVES   68 (307)
Q Consensus         2 aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~----~~~~~~g~--~~~~v~~------~d~~~l~~~l~-~~~~~v~~~~   68 (307)
                      |++++++++++|||+|+..+..+++...--.    ......|.  +.+..+.      .|.+++++... .++++|++-.
T Consensus       132 AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~  211 (490)
T 3ou5_A          132 ANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGT  211 (490)
T ss_dssp             HHHHHHHHHCC-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHCCSEEEECC
T ss_pred             HHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEEECC
Confidence            5668899999999999988887766542100    00111122  2222221      27888887765 5889999876


Q ss_pred             CCCCccccccHHHHHHHHHHcCCEEEEeCccC-----CCCcCCccCCCccEEEeccccccccCCCceeEEEEEcCh----
Q 021783           69 PTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE----  139 (307)
Q Consensus        69 ~~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~-----~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~----  139 (307)
                      ..+|  ...|.+++.++|++.|+++++|.+|-     .|..+++..+ +|++++|+||++.||+   +|+++++++    
T Consensus       212 SaY~--r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~-ADvVTtTTHKTLrGPr---GG~Il~~~~~~~~  285 (490)
T 3ou5_A          212 SAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-ADIVTTTTHKTLRGAR---SGLIFYRKGVKAV  285 (490)
T ss_dssp             SSCC--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT-CSEEEEESSSTTCSCS---CEEEEEECSEEEE
T ss_pred             ccCc--cccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCcccc-ceEEeccccccccCCC---ceEEEeccccccc
Confidence            5554  77899999999999999999999994     5677888876 9999999999998887   799999863    


Q ss_pred             ----------hHHHHHHHHHH-hcCCCCC--hhhHH---HHhhccccHHHHHHHHHHHHHHHHHHHhcCC
Q 021783          140 ----------RLAKELYFLQN-AEGSGLA--PFDCW---ICLRGVKTMALRVEKQQDNAQKIAEFLASHP  193 (307)
Q Consensus       140 ----------~~~~~~~~~~~-~~~~~~~--~~~~~---~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~  193 (307)
                                ++.+.+...-- ..-+.+.  ..++.   +..+.-..+....++..+|++.|.+.|..+.
T Consensus       286 ~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G  355 (490)
T 3ou5_A          286 DPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERG  355 (490)
T ss_dssp             CC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCC
Confidence                      23333433321 1111111  11111   2222234567778889999999999998763

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.65  E-value=3.2e-16  Score=135.20  Aligned_cols=183  Identities=11%  Similarity=0.057  Sum_probs=125.7

Q ss_pred             HHHHHHhcCC----CCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC--------ChHHHHhhcCC---CceEEE-Ee
Q 021783            4 LAAVTHLLGT----GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--------DLDEVASAIGP---WTKLVW-VE   67 (307)
Q Consensus         4 l~~~~~~~~~----gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--------d~~~l~~~l~~---~~~~v~-~~   67 (307)
                      ++++++.+++    ||+|+++..+|.+..    ..+...|+++++++..        |+++++++|..   +..+++ .+
T Consensus       148 lamilaa~r~~rpg~d~VIvpRn~HKSv~----kAliL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~T  223 (501)
T 3hl2_A          148 LTLCFLTLRHKRPKAKYIIWPRIDQKSCF----KSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHST  223 (501)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEECCCCHHHH----HHHHHTTCEEEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEE
T ss_pred             HHHHHHHcCcccCCCCEEEEecchHHHHH----HHHHHcCCeEEEEeeeecccccCCCHHHHHHHHHhcCCCcEEEEEec
Confidence            4666665553    499999999999999    6677899999999861        88999999862   333444 44


Q ss_pred             CCCCCccccccHHHHHHHHHHcCCEEEEeCccCCCCcC------CccCCC-ccEEEeccccccccCCCceeEEEEEcChh
Q 021783           68 SPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS------RPLELG-ADIVMHSATKFIAGHSDVMAGVLAVKGER  140 (307)
Q Consensus        68 ~~~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~------~~~~~~-~d~~~~s~~K~~~g~~g~~~G~~~~~~~~  140 (307)
                      .+.|..+.+.|+++|+++|++||+++++|+||+.....      .....| +|+++.|.||++..|-|  +|++..+++.
T Consensus       224 tt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~HK~llvpIG--G~ii~~~d~e  301 (501)
T 3hl2_A          224 TSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVG--GAIIAGFNDS  301 (501)
T ss_dssp             CSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCCCSS--CEEEEESCHH
T ss_pred             CCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEecccccceeecC--ceEEEeCCHH
Confidence            44453456679999999999999999999999864421      233457 99999999999877665  6677777765


Q ss_pred             HHHHHHHHHHhcCCCCChhhHHHH--hhccccHHHHHHHHHHHHHHHHHHHhcC
Q 021783          141 LAKELYFLQNAEGSGLAPFDCWIC--LRGVKTMALRVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~l~~~l~~~  192 (307)
                      ..+.+....+...++.+....|+.  ..+.+.++..+++..++++.+.+.+++.
T Consensus       302 ~l~~~~~~yPGr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~l  355 (501)
T 3hl2_A          302 FIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKL  355 (501)
T ss_dssp             HHHHHHHTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            544432211111111122223333  2344566667777778888888877754

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.65  E-value=1.2e-15  Score=136.48  Aligned_cols=206  Identities=15%  Similarity=0.139  Sum_probs=123.9

Q ss_pred             ChHHHHhhcCC------CceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCCcC---CccCCC---
Q 021783           49 DLDEVASAIGP------WTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS---RPLELG---  111 (307)
Q Consensus        49 d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~~~---~~~~~~---  111 (307)
                      |+++|++.+++      ++++|++++++|++|.+.+    +++|.++|++||+++|+|++|+ .|...   ....+|   
T Consensus       241 d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~  320 (472)
T 1ohv_A          241 CLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDD  320 (472)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSS
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCC
Confidence            57888888874      8999999988899998877    9999999999999999999997 33321   222334   


Q ss_pred             -ccEEEeccccc-cccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHH
Q 021783          112 -ADIVMHSATKF-IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAE  187 (307)
Q Consensus       112 -~d~~~~s~~K~-~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~  187 (307)
                       .|+  .|++|. ++      +|+++ +++ +.. +...........++..+..+.++++.+..  ..++..+..+.+.+
T Consensus       321 ~~Di--~t~sK~~l~------GG~~~-~~~-~~~-~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~  389 (472)
T 1ohv_A          321 PADV--MTFSKKMMT------GGFFH-KEE-FRP-NAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLT  389 (472)
T ss_dssp             CCSE--EEECGGGSS------EEEEE-CGG-GSC-SSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             CCCE--EEEcccccc------CCccC-chh-hcc-cccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence             455  478898 43      47766 433 321 11111111123345555555555554322  22333444444444


Q ss_pred             HHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCC
Q 021783          188 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI  267 (307)
Q Consensus       188 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~  267 (307)
                      .|+...   . .++.  ...       ..++.+.++.|.+.+......+.+.|.++||.+.++.                
T Consensus       390 ~L~~l~---~-~~~~--~v~-------~~~~~g~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g----------------  440 (472)
T 1ohv_A          390 GLLDLQ---A-RYPQ--FIS-------RVRGRGTFCSFDTPDESIRNKLISIARNKGVMLGGCG----------------  440 (472)
T ss_dssp             HHHHHH---H-HCTT--TCE-------EEEEETTEEEEECSSHHHHHHHHHHHHHTTEECEEET----------------
T ss_pred             HHHHHH---h-hCCC--cEE-------eecCCceEEEEEeCChhHHHHHHHHHHHCCeEEecCC----------------
Confidence            444220   0 0010  000       0123467888887655456778888877888765421                


Q ss_pred             cHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          268 PVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       268 ~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                                 +++||++++.    +++++.++.|.++++++
T Consensus       441 -----------~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~  471 (472)
T 1ohv_A          441 -----------DKSIRFRPTLVFRDHHAHLFLNIFSDILADF  471 (472)
T ss_dssp             -----------TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             -----------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence                       3459998875    66777777777776654

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.63  E-value=1.2e-15  Score=133.17  Aligned_cols=175  Identities=12%  Similarity=0.054  Sum_probs=119.8

Q ss_pred             CCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC--------ChHHHHhhcCC---CceEEEEeCC-CCCccccccHH
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--------DLDEVASAIGP---WTKLVWVESP-TNPRQQICDIR   80 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--------d~~~l~~~l~~---~~~~v~~~~~-~n~tG~~~~~~   80 (307)
                      +++.|+++..+|.+..    .++...|+.+++++..        |+++++++|..   +.+++++.++ ++.+|.+.|++
T Consensus       143 ~~~~viv~r~aHkSv~----kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~  218 (450)
T 3bc8_A          143 KAKYIIWPRIDQKSCF----KSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLE  218 (450)
T ss_dssp             TCCEEEEECCCCHHHH----HHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHH
T ss_pred             CCCEEEEECCcHHHHH----HHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHH
Confidence            3899999999999988    7788899999998761        89999999962   3345555544 44456888999


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCcC------CccCC-CccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcC
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVLS------RPLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  153 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~~------~~~~~-~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~  153 (307)
                      +|+++|++||+++++|+||+.....      ..... ++|+++.|+||++..+.+  ++++..+++...+..........
T Consensus       219 ~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~--~~~l~~rd~~~~~~~~~~~~g~~  296 (450)
T 3bc8_A          219 ELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVG--GAIIAGFNEPFIQDISKMYPGRA  296 (450)
T ss_dssp             HHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSS--CEEEEESCHHHHHHHHHHSCSCB
T ss_pred             HHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhcccCCCEEEECCccCCCchhc--cEEEEecCHHHHHHHHHHhhcCC
Confidence            9999999999999999999854321      11222 799999999999988877  88888876655443322211111


Q ss_pred             CCCChhhHHHHhh--ccccHHHHHHHHHHHHHHHHHHHhcCC
Q 021783          154 SGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHP  193 (307)
Q Consensus       154 ~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~l~~~~  193 (307)
                      ++.+....|..+.  +.+.+...+++..+.++.+.+.+++..
T Consensus       297 s~SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~  338 (450)
T 3bc8_A          297 SASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLA  338 (450)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            1212234443332  233444445555777777777776543

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.36  E-value=1.5e-12  Score=114.79  Aligned_cols=240  Identities=16%  Similarity=0.131  Sum_probs=142.5

Q ss_pred             CCCeEEEcCCCCcchHHHHhhh--cccCCcEEEEecCCChHHHHhhcC---CCceEEEEeCCCCCcccccc----HHHHH
Q 021783           13 TGEEIVAGDDLYGGTDRLLSRV--TPKTGVVVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIA   83 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~~--~~~~g~~~~~v~~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~----~~~l~   83 (307)
                      ..++|+....+|..........  ..........+|.+|++.+++.+.   +++.+|+++.++...|.+.+    +++|.
T Consensus       168 gr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr  247 (454)
T 4ao9_A          168 GRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALR  247 (454)
T ss_dssp             TCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHH
T ss_pred             cCCeEEEEeCCcCCccccccccccCccCCCCcccCCCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHH
Confidence            3567877777776543110000  011234566778889999998886   57889999998888898876    99999


Q ss_pred             HHHHHcCCEEEEeCccCCCCcCC---ccCCC--ccEEEeccccccccCCCceeEEEEEcChhHHHHHHH-HHH-hcCC--
Q 021783           84 EMAHAHGALLLVDNSIMSPVLSR---PLELG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN-AEGS--  154 (307)
Q Consensus        84 ~~~~~~~~~li~D~a~~~~~~~~---~~~~~--~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~-~~~-~~~~--  154 (307)
                      ++|++||+++|.||++. |....   ...+|  .|++  ++.|.++|  |+.+|.+.++++ +.+.+.. ... ..++  
T Consensus       248 ~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~--t~gK~lgg--G~Piga~~~~~e-i~~~~~~~~~~~~h~~T~  321 (454)
T 4ao9_A          248 ESATQVGALLVFDEVMT-SRLAPHGLANKLGIRSDLT--TLGKYIGG--GMSFGAFGGRAD-VMALFDPRTGPLAHSGTF  321 (454)
T ss_dssp             HHHHHHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEE--EEEGGGGT--TSSCEEEEECHH-HHGGGCTTTCSCCCCCTT
T ss_pred             HHHhhcCCEEEEECCCc-CCCccccchhccCCCCcEE--EeccccCC--CCcceeeeeHHH-HHHHHhhccCCccccCCC
Confidence            99999999999999996 32221   12234  4665  58898854  455899888854 4333321 100 0111  


Q ss_pred             CCChhhHHHHhhccccH--HHHHHHHHHHHHHHHHHHhcC----CCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC
Q 021783          155 GLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASH----PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  228 (307)
Q Consensus       155 ~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  228 (307)
                      ...+..+..+.+.++.+  +...++..+..+.+.+.|++.    +.+..                  .++.|.++.+.+.
T Consensus       322 ~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~------------------vrg~G~m~gi~f~  383 (454)
T 4ao9_A          322 NNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNALCANEGVAMQ------------------FTGIGSLMNAHFV  383 (454)
T ss_dssp             TTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCE------------------EEEETTEEEEESC
T ss_pred             CCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCEE------------------EeeeceEEEEEEe
Confidence            23345555555555433  223344444455555555432    21111                  1334666666552


Q ss_pred             -------------CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec--cCChHH
Q 021783          229 -------------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--IEDVND  293 (307)
Q Consensus       229 -------------~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~--~~~~~~  293 (307)
                                   +.+....+...+..+||.+.+...                             +.+|..  .+|+|+
T Consensus       384 ~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~~-----------------------------~~~s~~~T~~dId~  434 (454)
T 4ao9_A          384 QGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRGF-----------------------------VVLSLPLTDADIDR  434 (454)
T ss_dssp             CSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTCE-----------------------------EECCTTCCHHHHHH
T ss_pred             cCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCCC-----------------------------EEEeCCCCHHHHHH
Confidence                         122345566667778887765332                             222222  268888


Q ss_pred             HHHHHHHHHhcC
Q 021783          294 LISDLDKALRTG  305 (307)
Q Consensus       294 ~i~~l~~~l~~~  305 (307)
                      .++.|.++|.+.
T Consensus       435 ~l~al~~~l~~~  446 (454)
T 4ao9_A          435 YVAAIGSFIGGH  446 (454)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhc
Confidence            999998888654

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.29  E-value=1.8e-11  Score=108.25  Aligned_cols=206  Identities=17%  Similarity=0.180  Sum_probs=124.1

Q ss_pred             CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccCC----CCcCCccCCC--ccEEEeccccccccCCC
Q 021783           59 PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS----PVLSRPLELG--ADIVMHSATKFIAGHSD  128 (307)
Q Consensus        59 ~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~~----~~~~~~~~~~--~d~~~~s~~K~~~g~~g  128 (307)
                      .++.+|+++..+...|.+.+    +++|.++|++||+++|.||++..    |.......+|  .|+++  ++|.++|  |
T Consensus       225 ~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lgg--g  300 (456)
T 4atq_A          225 DQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIIT--MAKGIAG--G  300 (456)
T ss_dssp             GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGGT--T
T ss_pred             CceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhh--hhhcccC--c
Confidence            46889999998888888764    99999999999999999999863    3333333444  57765  6788853  4


Q ss_pred             ceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHH----HhcCCCccEEecCCCC
Q 021783          129 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF----LASHPRVKKVNYAGLP  204 (307)
Q Consensus       129 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~----l~~~~~~~~~~~~~l~  204 (307)
                      ..+|.++++++ +.+.+..........-.+..+..+.+.++.++.  +++.++++.+.++    |++...  +  ++. .
T Consensus       301 ~P~~av~~~~~-i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~--~--~~~-~  372 (456)
T 4atq_A          301 LPLSAITGRAD-LLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQ--HDLNGRARHIEELALGKLRELAA--E--LSA-G  372 (456)
T ss_dssp             SSCEEEEEEHH-HHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHH--H--CC---
T ss_pred             CCceeeEecHH-HHhcccccCCCCCCCCChHHHHhhHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHH--h--ccc-c
Confidence            56888888854 433332211222233445666776666665432  2233333333332    222100  0  000 0


Q ss_pred             CCCchHHHhhhccCCCceEEEEeC-------CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCC
Q 021783          205 EHPGHELHYSQAKGAGSVLSFLTG-------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  277 (307)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~  277 (307)
                      .++.    ....++.|.++.+.+.       +.+....+.+.+.++|+.+.....                         
T Consensus       373 ~~~~----v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g~-------------------------  423 (456)
T 4atq_A          373 GGSV----VGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTCGT-------------------------  423 (456)
T ss_dssp             ---C----EEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEECT-------------------------
T ss_pred             cCCc----eEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEecCC-------------------------
Confidence            0000    0012556778888772       334467788888888987653221                         


Q ss_pred             CCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          278 TEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       278 ~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                      ..+.||+.+.+    +++++.++.|.++|++.
T Consensus       424 ~~~~irl~PpL~it~~~id~~l~~l~~al~a~  455 (456)
T 4atq_A          424 YGNVIRLLPPLVISDELLIDGLEVLAAAIKAH  455 (456)
T ss_dssp             TSCEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence            23458888765    77888888888888753

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.18  E-value=3.5e-11  Score=106.82  Aligned_cols=199  Identities=17%  Similarity=0.194  Sum_probs=120.4

Q ss_pred             CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-C---CCcCCccCCC--ccEEEeccccccccCCC
Q 021783           59 PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-S---PVLSRPLELG--ADIVMHSATKFIAGHSD  128 (307)
Q Consensus        59 ~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~---~~~~~~~~~~--~d~~~~s~~K~~~g~~g  128 (307)
                      +++.+|+++..+...|.+.+    +++|.++|++||+++|.||++. .   |.......+|  .|+++  ++|.+++ .+
T Consensus       235 ~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t--~~K~l~g-G~  311 (473)
T 4e3q_A          235 DTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAII--SSKNLTA-GF  311 (473)
T ss_dssp             GGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEE--ECGGGGT-TS
T ss_pred             CceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHH--hcccccC-CC
Confidence            46788999998888888764    9999999999999999999986 2   2222222334  56665  7898853 22


Q ss_pred             ceeEEEEEcChhHHHHHHHHH-Hh----cC--CCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHHHhcCCCccEEe
Q 021783          129 VMAGVLAVKGERLAKELYFLQ-NA----EG--SGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVN  199 (307)
Q Consensus       129 ~~~G~~~~~~~~~~~~~~~~~-~~----~~--~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~  199 (307)
                      +.+|.++++++ +.+.+.... ..    .+  .+-.+..+..+.+.++.++.  ..++..+....+.+.|++.       
T Consensus       312 ~Pl~av~~~~~-i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l-------  383 (473)
T 4e3q_A          312 FPMGAVILGPE-LSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHI-------  383 (473)
T ss_dssp             SCCEEEEECHH-HHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHH-------
T ss_pred             CCcccccccHH-HHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHH-------
Confidence            55899998855 544443321 11    12  23345666676666665532  1222233333344433321       


Q ss_pred             cCCCCCCCchHHHhhhccCCCceEEEEeCC-----------HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCc
Q 021783          200 YAGLPEHPGHELHYSQAKGAGSVLSFLTGS-----------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIP  268 (307)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~  268 (307)
                          .+.|.+    ...++.|.++.+.+..           ......+.+.+.++|+.+++.+                 
T Consensus       384 ----~~~~~v----~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g-----------------  438 (473)
T 4e3q_A          384 ----AERPNI----GEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLG-----------------  438 (473)
T ss_dssp             ----TTSTTE----EEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEET-----------------
T ss_pred             ----hcCCCe----eEEeecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEecC-----------------
Confidence                111111    1124567777777621           1235667777888888665321                 


Q ss_pred             HHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          269 VEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       269 ~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                                 +.+|+++.+    +++|+.++.|.++|++
T Consensus       439 -----------~~i~l~PPL~it~~eid~~~~~l~~al~~  467 (473)
T 4e3q_A          439 -----------QSVVLCPPFILTEAQMDEMFDKLEKALDK  467 (473)
T ss_dssp             -----------TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             -----------CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                       237777653    7888889888888865

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.11  E-value=9.3e-11  Score=110.92  Aligned_cols=202  Identities=12%  Similarity=0.104  Sum_probs=120.5

Q ss_pred             HHHHhhcC--------CCceEEEEeCC-CCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CCC---cCCccCCC--
Q 021783           51 DEVASAIG--------PWTKLVWVESP-TNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPV---LSRPLELG--  111 (307)
Q Consensus        51 ~~l~~~l~--------~~~~~v~~~~~-~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~~---~~~~~~~~--  111 (307)
                      +.+++.+.        .++++|+++.. ++..|...+    +++|.++|++||+++|+||++. .|.   ......+|  
T Consensus       577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~  656 (831)
T 4a0g_A          577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCK  656 (831)
T ss_dssp             HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSC
T ss_pred             HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCC
Confidence            46777664        45789999986 888888875    9999999999999999999986 322   22222334  


Q ss_pred             ccEEEeccccccccCCC-ceeEEEEEcChhHHHHHHHHH------HhcCCCCChhhHHHHhhccccHHHHHHHHHHHHH-
Q 021783          112 ADIVMHSATKFIAGHSD-VMAGVLAVKGERLAKELYFLQ------NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQ-  183 (307)
Q Consensus       112 ~d~~~~s~~K~~~g~~g-~~~G~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-  183 (307)
                      .|++  +++|.++|  | +.+|+++++++ +.+.+....      ........+..+..+.+.++.++.  +.+.++.. 
T Consensus       657 PDii--tlsK~L~g--G~~Plgav~~~~~-i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~--~~l~~~~~~  729 (831)
T 4a0g_A          657 PDIA--CFAKLLTG--GMVPLAVTLATDA-VFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKD--PETNHNITS  729 (831)
T ss_dssp             CSEE--EECGGGGT--TSSCCEEEEECHH-HHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHC--TTTCTTBCT
T ss_pred             CcEE--EEeccccc--CccCcEEEEECHH-HHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHh--hHHHHHHHH
Confidence            4655  69999954  4 56899999855 444332211      112223445566665555443311  00000000 


Q ss_pred             -----------HHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH--------HHHHHHHhcCCcce
Q 021783          184 -----------KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--------ALSKHVVETTKYFS  244 (307)
Q Consensus       184 -----------~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~g  244 (307)
                                 .+.+.+++++.+                  ...++.|.++.+.+...        ..+..+.+.+.++|
T Consensus       730 ~~~~l~~~l~~~l~~~l~~~~~v------------------~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~G  791 (831)
T 4a0g_A          730 QGKTLRELWDEELVQQISSHSAV------------------QRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDG  791 (831)
T ss_dssp             TSSBBCCCSCHHHHHHHHHSTTE------------------EEEEEETTEEEEEEC---------CHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCc------------------eeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCC
Confidence                       011111111111                  01244577888877422        23667888888899


Q ss_pred             eecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          245 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       245 i~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                      +.++++.                            +.+|+++..    ++++++++.|.++++++
T Consensus       792 v~v~p~g----------------------------~~lrl~pp~~~t~e~id~~~~~l~~~l~~l  828 (831)
T 4a0g_A          792 IFTRPLG----------------------------NVIYLMCGPCTSPEICRRLLTKLYKRLGEF  828 (831)
T ss_dssp             EECCCBT----------------------------TEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred             cEEEecC----------------------------CEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            9877532                            349998654    77888888888888765

>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*

Probab=80.54  E-value=3.5  Score=31.51  Aligned_cols=43  Identities=12%  Similarity=0.147  Sum_probs=34.0

Q ss_pred             HHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEE
Q 021783           53 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV   95 (307)
Q Consensus        53 l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~~~~~li~   95 (307)
                      |.+.-.-.+..++++-..|+.|......++.++|++||+.++.
T Consensus       152 LarLAGl~Pa~vicEi~~~~dG~mar~~~l~~fA~~h~l~iit  194 (204)
T 1tks_A          152 LSTLAGLQPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKIIN  194 (204)
T ss_dssp             HHHHTTSCSBEEEEEBBCTTTCCBCBHHHHHHHHHHHTCCEEE
T ss_pred             HHHHcCCCceEEEEEEeECCCCCcCCHHHHHHHHHHcCCcEEE
Confidence            4444344677888776668899999999999999999998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	307
d1y4ia1	397	c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Ci	1e-90
d1gc0a_	392	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudom	1e-81
d1ibja_	380	c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale	2e-80
d1pffa_	331	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom	8e-74
d1qgna_	398	c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {C	4e-71
d2ctza1	421	c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydry	1e-69
d1cs1a_	384	c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {E	4e-68
d1n8pa_	393	c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Ba	1e-66
d1e5ea_	394	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom	1e-65
d1cl1a_	391	c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Esche	2e-43
d2aeua1	366	c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar	1e-32
d1p3wa_	391	c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich	7e-16
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	5e-12
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	5e-11
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	3e-07
d1jf9a_	405	c.67.1.3 (A:) NifS-like protein/selenocysteine lya	6e-06
d1gdea_	388	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	7e-06
d2hoxa1	425	c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ	2e-04
d1c4ka2	462	c.67.1.5 (A:108-569) Ornithine decarboxylase major	6e-04
d1v2da_	368	c.67.1.1 (A:) Glutamine aminotransferase {Thermus	0.001
d1j32a_	388	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho	0.002

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} Length = 397

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

 Score =  273 bits (699), Expect = 1e-90
 Identities = 120/297 (40%), Positives = 185/297 (62%), Gaps = 2/297 (0%)

Query: 9   HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVES 68
            L   G+ IV+   +YG T   LS   PK G+ V+ V+    +E+ +A+ P TK+V++E+
Sbjct: 97  TLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPEEIRAAMRPETKVVYIET 156

Query: 69  PTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSD 128
           P NP   + DI  +A +AH  GALL+VDN+ MSP   +PL+LGADIV+HS TK+I GH D
Sbjct: 157 PANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGD 216

Query: 129 VMAGVLAVKGERLAKE-LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE 187
           V+ G++  K E + +     L++  G  ++PF+ W+ LRGVKT+ +R+E+  +NA KIA 
Sbjct: 217 VIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIAR 276

Query: 188 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSIT 246
           FL  HP + +V Y GL  HP +EL   Q    G ++SF + G L   + ++ + +   + 
Sbjct: 277 FLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLA 336

Query: 247 VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 303
           VS G  ++LI  P  M+H+ +  E R   G+T+ L+R+SVG+ED  D+I+DL+ A+R
Sbjct: 337 VSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 393

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} Length = 392

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

 Score =  250 bits (638), Expect = 1e-81
 Identities = 114/305 (37%), Positives = 187/305 (61%), Gaps = 2/305 (0%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
            A  + +  LL  G+E++ G+ LYG T   L     + GV ++ V+  DL  + +A+ P 
Sbjct: 85  GAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPA 144

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           T++++ ESP NP   + DI  +A++A  HGA ++VDN+  +P L RPLELGAD+V+HSAT
Sbjct: 145 TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSAT 204

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELY-FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           K+++GH D+ AG++      + +     L++  G+ L+P D  + +RG+KT+ LR+++  
Sbjct: 205 KYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHC 264

Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVE 238
            NAQ +AEFLA  P+V+ ++Y GL   P + L   Q    G +++F L G +   +  + 
Sbjct: 265 ANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMN 324

Query: 239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL 298
             + FS  VS G  +SL   P  M+H+S   E R   G++E LVR+SVG+ED++DL++D+
Sbjct: 325 ALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADV 384

Query: 299 DKALR 303
            +AL+
Sbjct: 385 QQALK 389

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 380

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  246 bits (629), Expect = 2e-80
 Identities = 260/307 (84%), Positives = 289/307 (94%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
           MAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++GVVVKRVNT  LDEVA+AIGP 
Sbjct: 74  MAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQ 133

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 120
           TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMSPVLSRPLELGADIVMHSAT
Sbjct: 134 TKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSAT 193

Query: 121 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 180
           KFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDCW+CLRG+KTMALR+EKQQ+
Sbjct: 194 KFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQE 253

Query: 181 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 240
           NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGSV SF+TGS+ALSKH+VETT
Sbjct: 254 NARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETT 313

Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
           KYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDLVRIS GIEDV+DLISDLD 
Sbjct: 314 KYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDI 373

Query: 301 ALRTGPL 307
           A +T PL
Sbjct: 374 AFKTFPL 380

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} Length = 331

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

 Score =  228 bits (581), Expect = 8e-74
 Identities = 122/305 (40%), Positives = 187/305 (61%), Gaps = 3/305 (0%)

Query: 1   MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           M A+ A+V   L  G+ +++ D LYG T  L      K GV V  ++      +   + P
Sbjct: 23  MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLKP 82

Query: 60  WTKLVWVESPTNP-RQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHS 118
            T++V+ E+P NP  + I     + +       L++VDN+  SP+L+ PL+LG DIV+HS
Sbjct: 83  NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHS 142

Query: 119 ATKFIAGHSDVMAGVLAVKGERLAKE-LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 177
           ATK+I GH+DV+AG++  + + +AK     +++  G+ ++P D W+  RG  T+ +RV++
Sbjct: 143 ATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKR 202

Query: 178 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVV 237
             +NAQK+AEFL  H  VKKV Y GLP+HPGHE+   Q K  GS+++F    L  +K V+
Sbjct: 203 AAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVL 262

Query: 238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD 297
           +     S+ VS G  +SLI  P  M+HA +P E R+A GLT++L+R+SVG E+V D+I D
Sbjct: 263 DNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDD 322

Query: 298 LDKAL 302
           L +AL
Sbjct: 323 LKQAL 327

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 398

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  223 bits (568), Expect = 4e-71
 Identities = 92/245 (37%), Positives = 142/245 (57%), Gaps = 2/245 (0%)

Query: 59  PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHS 118
               L + ESPTNP  +  DI  ++++ H  GAL+ +D +  +P+  + L LGAD+V+HS
Sbjct: 152 KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHS 211

Query: 119 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 178
           ATKF+ GH+DV+AG       +L  E+  L +  G  L P   ++ +RG+KT+ LRV++Q
Sbjct: 212 ATKFLGGHNDVLAGC-ISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQ 270

Query: 179 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVV 237
              A ++AE L +HP+V+ V Y GL  HP H +   Q  G G  +SF + G L  +   V
Sbjct: 271 NSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFV 330

Query: 238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD 297
           +  K   I  SFG  +S++  P  MS+  +    R   G+ ++LVR S G+ED +DL +D
Sbjct: 331 DALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKAD 390

Query: 298 LDKAL 302
           + +AL
Sbjct: 391 ILQAL 395

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} Length = 421

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

 Score =  220 bits (561), Expect = 1e-69
 Identities = 104/338 (30%), Positives = 154/338 (45%), Gaps = 36/338 (10%)

Query: 1   MAALAAVTHLLGTGEE-IVAGDDLYGGTDRLLSRV-TPKTGVVVKRVNTCDLDEVASAIG 58
            AA       L    + IV+  +LYGGT              V         +E  +   
Sbjct: 83  HAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTD 142

Query: 59  PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMH 117
             T+  WVES  NP   I D+  +A+ A   G  L+VDN+  M   L RPL  GA +V H
Sbjct: 143 EKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTH 202

Query: 118 SATKFIAGHSDVMAGVLAVKGERLAK------------------------ELYFLQNAE- 152
           S TK++ GH  V+AG +   G    +                        EL F+  A  
Sbjct: 203 SLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARV 262

Query: 153 ------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH 206
                 G  L PF+ W+ L G++T++LR E+  +N   +A +L   P+V  VNY GLP H
Sbjct: 263 DGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHH 322

Query: 207 PGHELHYSQAKGA-GSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 264
           P H+      KG  G+VL+F L G    +K  +   K  S   + G  ++L   P   +H
Sbjct: 323 PHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTH 382

Query: 265 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 302
           + +  E +   G++ ++VR+SVG+E V DL ++L +AL
Sbjct: 383 SQLSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKEAL 420

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} Length = 384

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

 Score =  215 bits (547), Expect = 4e-68
 Identities = 124/305 (40%), Positives = 179/305 (58%), Gaps = 2/305 (0%)

Query: 1   MAALAAVTHLLGTGEE-IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP 59
           M+A+  VT +     + +VA  D YGG+ RL   +  +    V  V+  D   + +A+  
Sbjct: 75  MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAE 134

Query: 60  WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 119
             KLV VESP+NP  ++ DI KI  +A   GA+ +VDN+ +SP L  PL LGAD+V+HS 
Sbjct: 135 KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSC 194

Query: 120 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 179
           TK++ GHSDV+AGV+  K   +  EL +  N  G     FD ++ LRG++T+  R+E  Q
Sbjct: 195 TKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQ 254

Query: 180 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL-TGSLALSKHVVE 238
            NAQ I ++L + P VKK+ +  LPE+ GHE+   Q KG G++LSF   G     +  + 
Sbjct: 255 RNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLG 314

Query: 239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL 298
               F++  S G V+SLIS    M+HA +  E R A G++E L+RIS GIED  DLI+DL
Sbjct: 315 GLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADL 374

Query: 299 DKALR 303
           +   R
Sbjct: 375 ENGFR 379

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  211 bits (538), Expect = 1e-66
 Identities = 118/311 (37%), Positives = 173/311 (55%), Gaps = 9/311 (2%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 60
            A  A +   L  G   V+  D+YG               V        L+++   I   
Sbjct: 80  SATTATILQSLPQGSHAVSIGDVYG-GTHRYFTKVANAHGVETSFTNDLLNDLPQLIKEN 138

Query: 61  TKLVWVESPTNPRQQICDIRKIAEMAHAH----GALLLVDNSIMSPVLSRPLELGADIVM 116
           TKLVW+E+PTNP  ++ DI+K+A++   H      +L+VDN+ +SP +S PL  GADIV+
Sbjct: 139 TKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVV 198

Query: 117 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVE 176
           HSATK+I GHSDV+ GVLA   + L + L FLQNA G+  +PFD W+  RG+KT+ LRV 
Sbjct: 199 HSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLHLRVR 258

Query: 177 KQQDNAQKIAEFLASHPRVKKVNYAGLPEH---PGHELHYSQAKGAGSVLSF-LTGSLAL 232
           +   +A KIAEFLA+             +        L   +    G ++SF + G    
Sbjct: 259 QAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEA 318

Query: 233 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVN 292
           +     +T+ F++  S G ++SL+ +P  M+H  IP E R+A G+ +DLVRISVGIED +
Sbjct: 319 ASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTD 378

Query: 293 DLISDLDKALR 303
           DL+ D+ +AL+
Sbjct: 379 DLLEDIKQALK 389

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

 Score =  208 bits (531), Expect = 1e-65
 Identities = 106/285 (37%), Positives = 175/285 (61%), Gaps = 3/285 (1%)

Query: 21  DDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD-I 79
           + LYG T  L      K G+ V  +NT    EV   + P TK+V+ E+P NP  +I D  
Sbjct: 105 ECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDME 164

Query: 80  RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE 139
           R   +     G L++ DN+  SP+++ P++ G D+V+HSATK+I GH+DV+AG++  K +
Sbjct: 165 RVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKAD 224

Query: 140 RLAKELY-FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKV 198
            L +     +++  GS ++P D W+  RG+ T+ +R++ + +NA K+AE+L SHP V+KV
Sbjct: 225 LLQQIRMVGIKDITGSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKV 284

Query: 199 NYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLIS 257
            Y G  +H GH++   Q +  GS+++F+       +K +++  K  ++ VS G  +SLI 
Sbjct: 285 YYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQ 344

Query: 258 MPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 302
            P  M+HA +P E R+A G+T+ ++R+SVGIED ++LI+D  + L
Sbjct: 345 HPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGL 389

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

 Score =  150 bits (380), Expect = 2e-43
 Identities = 63/242 (26%), Positives = 114/242 (47%), Gaps = 6/242 (2%)

Query: 64  VWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFI 123
           +                  A  +    A++++DN+  + VL + L+ G D+ + +ATK++
Sbjct: 149 LESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYL 208

Query: 124 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQ 183
            GHSD M G          +         G  +     +I  RG++T+ +R+ +  +++ 
Sbjct: 209 VGHSDAMIGTAVCNARCWEQLREN-AYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSL 267

Query: 184 KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL---TGSLALSKHVVETT 240
           K+AE+LA HP+V +VN+  LP   GHE       G+  + SF+     +     + ++  
Sbjct: 268 KVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNF 327

Query: 241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 300
             FS+  S+G  +SLI        A+I    +     +  L+R+ +G+EDV+DLI+DLD 
Sbjct: 328 SLFSMAYSWGGYESLILANQPEHIAAI--RPQGEIDFSGTLIRLHIGLEDVDDLIADLDA 385

Query: 301 AL 302
             
Sbjct: 386 GF 387

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  121 bits (304), Expect = 1e-32
 Identities = 44/294 (14%), Positives = 94/294 (31%), Gaps = 26/294 (8%)

Query: 2   AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWT 61
           A LA +  L          +          S       V  K   +  + E+ + I   T
Sbjct: 80  AILATILALKPKKVIHYLPELPGHP-----SIERSCKIVNAKYFESDKVGEILNKIDKDT 134

Query: 62  KLVWVESPTNPRQ-QICDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIV 115
            ++   S  + +  ++ + +K+   A    A++ VD++  + V         L+LGAD+V
Sbjct: 135 LVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLV 194

Query: 116 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL-R 174
           + S  K + G    +        + L  ++Y      G    P       R +K   L R
Sbjct: 195 VTSTDKLMEGPRGGLL----AGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLER 250

Query: 175 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL-HYSQAKGAGSVLSF-LTGSLAL 232
           + K  + A+            +                     K      +  +   + +
Sbjct: 251 IRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEI 310

Query: 233 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV 286
             ++++     +IT        +  MP       I +  R A  + ++ +  ++
Sbjct: 311 GFNLLKNYGIITIT--------VAGMPGASKSLRIDLTSRDAERIDDNYIIKAI 356

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

 Score = 75.0 bits (183), Expect = 7e-16
 Identities = 54/312 (17%), Positives = 105/312 (33%), Gaps = 25/312 (8%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-----TCDLDEVAS 55
           +A   A       G+ I+     +        ++  + G  V  +        DL E+ +
Sbjct: 80  LAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQL-EREGFEVTYLAPQRNGIIDLKELEA 138

Query: 56  AIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADI 114
           A+   T LV +    N    + DI  I EM  A G +  VD +     L     +L  D+
Sbjct: 139 AMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDL 198

Query: 115 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALR 174
           +  S  K          G L V+     K    ++     G            V  +   
Sbjct: 199 MSFSGHKIYGPK---GIGALYVR----RKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGM 251

Query: 175 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSK 234
            E  +   +++A  +     ++   + G+ +     L+     GA ++L+    S    +
Sbjct: 252 GEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNV---SFNYVE 308

Query: 235 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----ED 290
                     + VS GS  +  S+       ++ +    A       +R S+G     E+
Sbjct: 309 GESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHS----SIRFSLGRFTTEEE 364

Query: 291 VNDLISDLDKAL 302
           ++  I  + K++
Sbjct: 365 IDYTIELVRKSI 376

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.8 bits (154), Expect = 5e-12
 Identities = 38/324 (11%), Positives = 85/324 (26%), Gaps = 34/324 (10%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN----TCDLDEVASA 56
                 + H     + I+          + +     +  V+   +       DL  V + 
Sbjct: 127 TLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAK 186

Query: 57  ----IGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDN--SIMSPVLSRPLEL 110
                      +   +     +    + ++A +   +    +V+N   + S      ++ 
Sbjct: 187 IQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQ 246

Query: 111 -----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL 165
                  D  + S  K           ++A   E   +++  +     S     D  I L
Sbjct: 247 GARVGRIDAFVQSLDKNFMVPVGGA--IIAGFNEPFIQDISKMYPGRASASPSLDVLITL 304

Query: 166 R--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL 223
              G       ++++++    ++  L              P +P       +        
Sbjct: 305 LSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDK 364

Query: 224 SFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVR 283
           +       L    V   +   +           +   FMSHA                + 
Sbjct: 365 AVTQLGSMLFTRQVSGARAVPLGNVQTVSG--HTFRGFMSHADNY---------PCAYLN 413

Query: 284 ISVGI----EDVNDLISDLDKALR 303
            +  I    +DV+  I  LDK L 
Sbjct: 414 AAAAIGMKMQDVDLFIKRLDKCLN 437

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 60.7 bits (146), Expect = 5e-11
 Identities = 40/268 (14%), Positives = 84/268 (31%), Gaps = 39/268 (14%)

Query: 46  NTCDLDEVASAIGPWTKL-----VWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM 100
               ++++ +AI    +L     V       P +   DI +IA++   +    +++ +  
Sbjct: 192 VYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYA 251

Query: 101 SPV------LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS 154
                    L +  +   D V+ S+ K +     +  G++        KE+        S
Sbjct: 252 IQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTP--IGGGLVYSTDAEFIKEISLSYPGRAS 309

Query: 155 GLAPFDCWI--CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH 212
                +  +     G K     V+ Q+++ + + E L      KK     L         
Sbjct: 310 ATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLS--KKTGGKFLDVESPIASC 367

Query: 213 YSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR 272
            S       + + L          ++ T +F                   +H  I +   
Sbjct: 368 ISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFG-----------NCYLGTYTHDYIVMNA- 415

Query: 273 QARGLTEDLVRISVGIEDVNDLISDLDK 300
            A G+           ED+ + +S L+K
Sbjct: 416 -AIGVRT---------EDIVNSVSKLEK 433

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score = 49.0 bits (116), Expect = 3e-07
 Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 22/158 (13%)

Query: 2   AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVV---KRVNTCDLDEVASAIG 58
           A       +L  G+E++     +     ++         V    +     D + V  AI 
Sbjct: 103 ALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAIT 162

Query: 59  PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RPLELG 111
           P TK + V SP NP   +     +  +A +A  H   L+ D      +       P  + 
Sbjct: 163 PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVA 222

Query: 112 AD--IVMHSATK----------FIAGHSDVMAGVLAVK 137
            +  + ++ A K          +  G  +V+  + +V 
Sbjct: 223 PEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVS 260

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Length = 405

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

 Score = 44.9 bits (105), Expect = 6e-06
 Identities = 45/323 (13%), Positives = 98/323 (30%), Gaps = 39/323 (12%)

Query: 1   MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-----TCDLDEVAS 55
           + A +     +  G+ I+     +         +  + G  ++ +      T  L+ + +
Sbjct: 99  LVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPT 158

Query: 56  AIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS-PVLSRPLELGADI 114
                T+L+ +   +N       + ++  +AH HGA +LVD +            L  D 
Sbjct: 159 LFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDF 218

Query: 115 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV------ 168
            + S  K          G+L VK   L +   +                           
Sbjct: 219 YVFSGHKLYGPTG---IGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEA 275

Query: 169 ----KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS 224
                   + +    +    +     +      ++YA        +L     +    V++
Sbjct: 276 GTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIA 335

Query: 225 FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI 284
           F  G    +  V      + I V  G             H ++P+       +   + R 
Sbjct: 336 FNLGKHH-AYDVGSFLDNYGIAVRTG------------HHCAMPLM--AYYNV-PAMCRA 379

Query: 285 SVGI----EDVNDLISDLDKALR 303
           S+ +    E+V+ L++ L +  R
Sbjct: 380 SLAMYNTHEEVDRLVTGLQRIHR 402

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.8 bits (105), Expect = 7e-06
 Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 23/135 (17%)

Query: 6   AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG 58
            ++  L  GEE++     +      +       G     V T        ++DE+   + 
Sbjct: 102 GLSAFLKDGEEVLIPTPAFVSYAPAVIL----AGGKPVEVPTYEEDEFRLNVDELKKYVT 157

Query: 59  PWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVD---------NSIMSPVLSR 106
             T+ + + SP NP   +    D+ +IA+    H  +++ D         ++    + S 
Sbjct: 158 DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASL 217

Query: 107 PLELGADIVMHSATK 121
                  I ++  +K
Sbjct: 218 DGMFERTITVNGFSK 232

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 29/167 (17%), Positives = 49/167 (29%), Gaps = 10/167 (5%)

Query: 49  DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL 108
           +     +   P   +  V SP NP   +         A   G   + D     P  +   
Sbjct: 185 NAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPIK 237

Query: 109 ELGA-DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG 167
                DI++ + +K   GHS    G   +K E +   L         G         L+ 
Sbjct: 238 YKADEDILLFTMSK-FTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKV 296

Query: 168 VKTMALRVEKQQDNAQKIAEFLASHPR-VKKVNYAGLPEHPGHELHY 213
           +K +   V+ Q+   + +  F     R       A L +        
Sbjct: 297 LKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQE 343

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

 Score = 38.9 bits (89), Expect = 6e-04
 Identities = 29/295 (9%), Positives = 65/295 (22%), Gaps = 45/295 (15%)

Query: 49  DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVD------------ 96
              +   A       + V         I +  ++ +        +  D            
Sbjct: 162 AKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPM 221

Query: 97  --NSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF------- 147
             NS    +     E    IV+ S  K  AG S      +  K   +  +L +       
Sbjct: 222 MRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFN 279

Query: 148 --LQNAEGSGLAPFDCWICLRGVKTMAL-----RVEKQQDNAQKIAEFLASHPRVKKVNY 200
                   +                                  +  + L     + +   
Sbjct: 280 NSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFV 339

Query: 201 AGL-PEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS----ITVS-FGSVKS 254
             +       +              F  G+   +       +Y+       ++  G    
Sbjct: 340 PPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPE 399

Query: 255 LISMPCFMSHASIPVEVRQARGLTEDL-----VRISVGI----EDVNDLISDLDK 300
                 F   A+I     +  G+  +      +   +        +N+LI+ L +
Sbjct: 400 TGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQ 454

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 48  CDLDEVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVD 96
            DL  +  A+ P T+ + + +P NP   +    ++  IA +A AH   L+ D
Sbjct: 140 LDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISD 191

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 32/221 (14%), Positives = 73/221 (33%), Gaps = 34/221 (15%)

Query: 2   AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---DLDEVASAIG 58
           +    +  ++  G+E++     +     ++        ++   V T      +++  AI 
Sbjct: 102 SIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAIT 161

Query: 59  PWTKLVWVESPTNP---RQQICDIRKIAEMAHAHGALLLVDN----------SIMSPVLS 105
           P TKL+   +P+NP        ++R IA++A   G  +L D             +S   +
Sbjct: 162 PKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAA 221

Query: 106 RPLELGADIVMHSATK----------FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG 155
            P      +V     K          F+AG   ++     ++G   +    F Q      
Sbjct: 222 SPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYG---- 277

Query: 156 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVK 196
                          +   +    +  + + + L + P ++
Sbjct: 278 ----AIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLE 314

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	307
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	100.0
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	100.0
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	100.0
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	100.0
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	100.0
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	100.0
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	100.0
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	100.0
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	100.0
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	100.0
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.96
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.96
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.96
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.96
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.95
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.95
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.95
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.95
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.95
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.95
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.94
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.94
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.94
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.94
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.93
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.93
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.93
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.93
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.93
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.93
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.93
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.93
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.92
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.92
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.92
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.92
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.91
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.91
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.9
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.9
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.89
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.89
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.88
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.86
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.86
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.86
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.85
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.85
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.85
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.84
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.83
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.83
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.83
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.83
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.82
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.81
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.79
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.79
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.78
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.78
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.76
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.75
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.72
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.72
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.71
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.65
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.64
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.55
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.53
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.52
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.5
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.49
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.43
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.42
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.41
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.41
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.38
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.36
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.23
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.16
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.16
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.08
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.07
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.06
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	98.97
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	98.59
d1tksa_	202	3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB	81.25

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.1e-49  Score=336.31  Aligned_cols=307  Identities=85%  Similarity=1.279  Sum_probs=295.0

Q ss_pred             CcHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         1 ~aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      |||+.++++++++||+|+++++.|..+...+......+|+++.+++..++++++++++++|++|++++|.||+..+.|++
T Consensus        74 MaAisall~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~  153 (380)
T d1ibja_          74 MAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIR  153 (380)
T ss_dssp             HHHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHH
T ss_pred             HHHHHHHHHhhCCCCEEEEEecccccccchhhhhhccccccccccCcchHHHHHHHhccCccEEEeccccccccccccHH
Confidence            78888888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhh
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  160 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (307)
                      +|+++|+++|+++|+|++.+.+....+.++|+|+++.|.+|+++|...+.+|.++.+++.+.+.+.......|..+++..
T Consensus       154 ~i~~iA~~~g~~~vVDnT~atP~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~  233 (380)
T d1ibja_         154 KISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFD  233 (380)
T ss_dssp             HHHHHHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHH
T ss_pred             HHHHHHHHcCCeEEeeccccccccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999988888888888888999999999


Q ss_pred             HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcC
Q 021783          161 CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT  240 (307)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  240 (307)
                      +|+..++++.+..|++++.+|++++.++|+.++.+.+++||+++++|++.++.++..+.+++++|.+.+.+.+.++++.|
T Consensus       234 a~ll~rgl~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~~~~a~~f~d~l  313 (380)
T d1ibja_         234 CWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETT  313 (380)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHC
T ss_pred             HHHHHhcchhhhhhHHHHHHHHHHHHHHHHhCCCeeEEeccccccCccccccccccccccccccccccHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999998888888899999999999899999999


Q ss_pred             CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcCCC
Q 021783          241 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL  307 (307)
Q Consensus       241 ~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~~~  307 (307)
                      +...+.+++|+..++.++|...+|..++.+.+...|..++.||||+|+||.|.+++.|.++|+.+|+
T Consensus       314 ~l~~~a~SlG~~~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlE~~eDLi~Dl~qAl~~l~~  380 (380)
T d1ibja_         314 KYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTFPL  380 (380)
T ss_dssp             SSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCSSCHHHHHHHHHHHHHSCCC
T ss_pred             CcCeEeeccCCccccccCchhhhhhcCCHHHHHHcCCCcCeEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999998999999999999999999999999999999999985

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=100.00  E-value=8.8e-49  Score=334.14  Aligned_cols=304  Identities=39%  Similarity=0.715  Sum_probs=286.6

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |||+ +++++++++||+|++++..|......+...+..+|+++.+++..|+++++++++++|++|++++|.||+..+.|+
T Consensus        88 maAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~d~~~~~~~i~~~Tklv~~Esp~NP~l~v~Di  167 (397)
T d1y4ia1          88 ISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPEEIRAAMRPETKVVYIETPANPTLSLVDI  167 (397)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             HHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCceEeeccCCCCHHHHHHhcCCCCcEEEecCCcccceeeccc
Confidence            6888 666789999999999999999999999888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHH-HHHHHHHhcCCCCCh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAP  158 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~-~~~~~~~~~~~~~~~  158 (307)
                      ++|+++||++|+++++|++.+.+....+.++|+|+++.|.+|+++|...+.+|+++++++.+.+ .+.......|..+++
T Consensus       168 ~~i~~iA~~~gi~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p  247 (397)
T d1y4ia1         168 ETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSP  247 (397)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCH
T ss_pred             HHHHHHhhcCCceEEecCcccCcccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCH
Confidence            9999999999999999999999999999999999999999999999999999999999776654 344556667899999


Q ss_pred             hhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC-HHHHHHHH
Q 021783          159 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVV  237 (307)
Q Consensus       159 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  237 (307)
                      ..+|++.++++++..|++++.+|+.++.++|+.++.+.+++||+++++|++.++.++..+.+++++|.+.+ .+.+.+|+
T Consensus       248 ~~a~l~~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~~~~~~f~  327 (397)
T d1y4ia1         248 FNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMI  327 (397)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHH
T ss_pred             HHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988889999999955 55678999


Q ss_pred             hcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 021783          238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  304 (307)
Q Consensus       238 ~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  304 (307)
                      +.|+...+.+++|+..++.++|...+|..++.+.+...|..++.||+|+|+||.+.+++.|.++|++
T Consensus       328 ~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGlEd~~DLi~Dl~~AL~~  394 (397)
T d1y4ia1         328 NSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRK  394 (397)
T ss_dssp             HTCSSSEECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             HcCCccceeeccCcccceeeCccccccccCCHHHHHHcCCCcCEEEEEeccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999975

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=5.5e-49  Score=335.29  Aligned_cols=304  Identities=38%  Similarity=0.658  Sum_probs=271.4

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |||+ +++++++++||+|++++..|++....+...++.+|+++.+++..|+++++++++++|++|++++|.||+..+.|+
T Consensus        84 maAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~d~~~~~~ai~~~t~lv~~Esp~NP~l~v~Di  163 (392)
T d1gc0a_          84 MGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADI  163 (392)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             HHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCCccCHHHHHHhCCCCCeEEEecccccceeeecch
Confidence            6888 667789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHH-HHHHHHHhcCCCCCh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAP  158 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~-~~~~~~~~~~~~~~~  158 (307)
                      ++|+++||++|+++++|++++.|....+.++|+|+++.|.+|+++|...+.+|.++++++.+.+ ++.......|..+++
T Consensus       164 ~~i~~ia~~~g~~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p  243 (392)
T d1gc0a_         164 AGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSP  243 (392)
T ss_dssp             HHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCH
T ss_pred             HHHHHHHHhcCCEEEEecCccCccccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCCh
Confidence            9999999999999999999999999999999999999999999999999999999998776654 345566678999999


Q ss_pred             hhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC-CHHHHHHHH
Q 021783          159 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVV  237 (307)
Q Consensus       159 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  237 (307)
                      ..+|+..++++.+..|++++.+|++.+.++|+.++.+.++++|+++++|+++++.++..+.+++++|.+. +.+.+..|+
T Consensus       244 ~da~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~~~~~~f~  323 (392)
T d1gc0a_         244 HDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFM  323 (392)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHH
T ss_pred             hhHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccCCCcEEEEEEeCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998888888999999995 556678999


Q ss_pred             hcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 021783          238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  304 (307)
Q Consensus       238 ~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  304 (307)
                      +.|+...+.+++|+..++.++|...+|..++.+.+...|..++.||||+|+||.+.+++.|.++|++
T Consensus       324 ~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~Gi~~~liRlSVGlEd~eDLi~Dl~~AL~a  390 (392)
T d1gc0a_         324 NALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKA  390 (392)
T ss_dssp             HHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             HhCCcceEeeccCCcChhhcCccccccccCCHHHHHHcCCCcCeEEEEeeeCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999975

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-47  Score=325.74  Aligned_cols=305  Identities=41%  Similarity=0.635  Sum_probs=290.1

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |||+ .++++++++||+|++++..|......+...+...|.++.+++..|.++++.++.++|++|++++|.||+..+.|+
T Consensus        75 MaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di  154 (384)
T d1cs1a_          75 MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDI  154 (384)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCH
T ss_pred             HHHHHHHHhhcccccceecccccccchhhhhhhhhhcccccccccccCCCHHHHHhhccccccEEEEeccccccceeccH
Confidence            6888 566779999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  159 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (307)
                      ++|+++||++|+++|+|++.+.|....+.++|+|+++.|.+|+++|...+.+|+++.+++.+.+.+.......|..+++.
T Consensus       155 ~~i~~ia~~~g~~~vVDNT~atP~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~  234 (384)
T d1cs1a_         155 AKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAF  234 (384)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHH
T ss_pred             HHHhhhhhhcCcEEEEeccccCcccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999998888888888888889999999


Q ss_pred             hHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEe-CCHHHHHHHHh
Q 021783          160 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVE  238 (307)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  238 (307)
                      .+|+..++++++..|++++.+|+..+.++|+.++.+.++.||+++++|+++++.++..+.+++++|.+ .+.+.+.+|++
T Consensus       235 ~a~ll~rgL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~~f~~  314 (384)
T d1cs1a_         235 DSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLG  314 (384)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHH
T ss_pred             cHHHHhhccchhHHHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988888899999999 56777899999


Q ss_pred             cCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          239 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       239 ~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      .|+...+.+++|+..++.++|...+|..++.+.+...|..++.||+|+|+||.|.+++.|.++|++.
T Consensus       315 ~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlEd~eDLi~Dl~~AL~aa  381 (384)
T d1cs1a_         315 GLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA  381 (384)
T ss_dssp             TCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             hCCcceeccccCCccceeccccccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999864

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=4e-46  Score=318.19  Aligned_cols=304  Identities=34%  Similarity=0.575  Sum_probs=283.0

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHh-hcCCCceEEEEeCCCCCcccccc
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVAS-AIGPWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~-~l~~~~~~v~~~~~~n~tG~~~~   78 (307)
                      |||+ +++++++++||+|++++..|+.....+....+.+|+++.+++..+.++..+ .+.++|++|++++|.||+..+.|
T Consensus        92 MaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~t~~v~~EspsNP~l~v~D  171 (398)
T d1qgna_          92 MCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVD  171 (398)
T ss_dssp             HHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEESSCTTTCCCCC
T ss_pred             chHHHHHHhhcccccccccccccccchhhhhhcccccccccccccccccchhhhhhhhccccceEEEccCccccccccch
Confidence            6888 577789999999999999999999999999999999999999777766554 45689999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCCh
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP  158 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (307)
                      +++|+++||++|+++++|++.+.+....+.++|+|+++.|.+|+++|...+.+|.+..+ +...+.........|..+++
T Consensus       172 i~~ia~ia~~~g~~~vVDnT~atP~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~-~~~~~~~~~~~~~~G~~l~p  250 (398)
T d1qgna_         172 IELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGP-LKLVSEIRNLHHILGGALNP  250 (398)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEEC-HHHHHHHHHHHHHHCCCCCH
T ss_pred             HHHHHHHHhhcCCEEEecceeeccccCCchhhCCCEEEEechhhcCcccceeehhhcch-hhhhhhhhhhcccCCCcCCH
Confidence            99999999999999999999999999999999999999999999999999999988776 44556667777788899999


Q ss_pred             hhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC-CHHHHHHHH
Q 021783          159 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVV  237 (307)
Q Consensus       159 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  237 (307)
                      ..+|+..++++++..|++++.+|+..+.++|+.++.+.+++||+++++|+++++.++..+.+++++|.+. +.+.+.+|+
T Consensus       251 ~~a~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~~~a~~f~  330 (398)
T d1qgna_         251 NAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFV  330 (398)
T ss_dssp             HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHH
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998888999999985 777889999


Q ss_pred             hcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       238 ~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      +.|+...+.+++|+..++.++|...+|..++.+.+...|.+++.||+|+|+||.+.+++.|.++|+++
T Consensus       331 ~~L~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGlEd~eDLi~Dl~~AL~~i  398 (398)
T d1qgna_         331 DALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDSI  398 (398)
T ss_dssp             HHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCSSCHHHHHHHHHHHHHHC
T ss_pred             HcCCcceeeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEeccCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999864

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=100.00  E-value=4.2e-47  Score=318.87  Aligned_cols=305  Identities=41%  Similarity=0.689  Sum_probs=283.7

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |||+ .+++++++|||+|++++..|.++...+...++.+|+++.+++..|++.++++++++|++|++++|.||+..+.|+
T Consensus        23 MaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~d~~~~~~~i~~~t~~i~~Es~~np~~~v~d~  102 (331)
T d1pffa_          23 MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDI  102 (331)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEecccchhhHhhhcccccceeeeecccccccccccc
Confidence            6888 677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-HHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH-HHHhcCCCCC
Q 021783           80 RKIAEMA-HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLA  157 (307)
Q Consensus        80 ~~l~~~~-~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~-~~~~~~~~~~  157 (307)
                      +++.+++ +++|+++|+|++.+.+...++.++|+|+++.|.+|+++|...+.+|+++.+++........ .....|..++
T Consensus       103 ~~~~~~~a~~~~~~~vVDnT~atp~~~~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~  182 (331)
T d1pffa_         103 EDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIIS  182 (331)
T ss_dssp             HHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCC
T ss_pred             hhhhhhhhcccCceEEeeccccccccccccccCCCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCC
Confidence            9999885 6789999999999999988999999999999999999999999999999986544332222 2344688899


Q ss_pred             hhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHH
Q 021783          158 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVV  237 (307)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (307)
                      +..+|+..++++++..|++++.+|+..+.++|+.++.+.+++||+++++|+++++.++..+.+++++|.+++.+.+.+|+
T Consensus       183 p~~a~ll~rgl~Tl~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~~~~~~~f~  262 (331)
T d1pffa_         183 PHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVL  262 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeeccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888888999999999988899999


Q ss_pred             hcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       238 ~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      +.|+..++.+++|+..++.++|...+|..++.+.+...|..++.||+|+|+||.+.+++.|.++|+++
T Consensus       263 d~l~lf~~~~SlG~~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlsvGlE~~~DLi~Dl~~AL~~i  330 (331)
T d1pffa_         263 DNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             HTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred             HhCCcceecccCCCCceeEeCccccccccCCHHHHHhcCCCcCeEEEEeeeCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999875

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=100.00  E-value=1.4e-45  Score=315.52  Aligned_cols=305  Identities=37%  Similarity=0.688  Sum_probs=281.3

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |||+ +++++++++||+|++++..|......+...+..+|+++.+++..|+++++++++++|++|++++|.||+..+.|+
T Consensus        84 maAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~d~~~~~~~i~~~t~lv~~Etp~NP~l~v~Di  163 (394)
T d1e5ea_          84 MGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDM  163 (394)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             hHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccceeeeccCCCCHHHHHHhhcccccEEEEeccCCcceeeehh
Confidence            6888 467889999999999999999999888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-cCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHH-HHHHHhcCCCCC
Q 021783           80 RKIAEMAHA-HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL-YFLQNAEGSGLA  157 (307)
Q Consensus        80 ~~l~~~~~~-~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~-~~~~~~~~~~~~  157 (307)
                      +++.+.+++ +|+++++|++.+.+...++.++|+|+++.|.+|+++|...+.+|+++++++...... .......|..++
T Consensus       164 ~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~ls  243 (394)
T d1e5ea_         164 ERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVIS  243 (394)
T ss_dssp             HHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCC
T ss_pred             hhhhhccccccCeEEEecCcccCcccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCC
Confidence            999987765 689999999999999999999999999999999999999999999999866444322 223445788999


Q ss_pred             hhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC-HHHHHHH
Q 021783          158 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHV  236 (307)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  236 (307)
                      +..+|+..++++++..|++++.+|+..+.++|+.++.+.+++||+++++|++.++.++.++.|++++|.+.+ .+.+.+|
T Consensus       244 p~~a~ll~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~a~~f  323 (394)
T d1e5ea_         244 PHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKL  323 (394)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHH
T ss_pred             hHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeeeccCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999888889999999854 4668899


Q ss_pred             HhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          237 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       237 ~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      ++.|+...+.+++|+..++.++|...+|..++.+.+...|.+++.||+|+|+||.+.+++.|.++|+++
T Consensus       324 ~~~l~l~~~a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVGlEd~eDLi~Dl~qAl~~l  392 (394)
T d1e5ea_         324 LDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDAL  392 (394)
T ss_dssp             HHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             HHhCCccceeeccCCccceeECccccccccCCHHHHHhcCCCcCEEEEEeccCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999864

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=9.6e-45  Score=311.39  Aligned_cols=302  Identities=34%  Similarity=0.543  Sum_probs=272.9

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCC-hHHHHhhcCCCceEEEEeCCCCCcccccc
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD-LDEVASAIGPWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d-~~~l~~~l~~~~~~v~~~~~~n~tG~~~~   78 (307)
                      |||+ +++++++++||+|++++..|+++...+...+..+|+++.+++..+ .+..++.++++|++|++++|.||+..+.|
T Consensus        83 maAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~~~~~~~t~li~~EtpsNP~l~v~D  162 (421)
T d2ctza1          83 HAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPD  162 (421)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred             HHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhccccceecccccCcchhccccCCCceEEEEcCCCcceeEecc
Confidence            6787 677889999999999999999999999999999999999998765 45667778899999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccC-CCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhH----------------
Q 021783           79 IRKIAEMAHAHGALLLVDNSIM-SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL----------------  141 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~-~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~----------------  141 (307)
                      +++|+++||++|+++++|++.+ .+....+.++|+|+++.|.+|+++|.+.+.+|+++.+++..                
T Consensus       163 i~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~  242 (421)
T d2ctza1         163 LEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGY  242 (421)
T ss_dssp             HHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGG
T ss_pred             hHHHHHHHHhcCCceEecccccccceeccccccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhh
Confidence            9999999999999999999998 67778999999999999999999999999999999865421                


Q ss_pred             ---------------HHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCC
Q 021783          142 ---------------AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH  206 (307)
Q Consensus       142 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~  206 (307)
                                     .+......+..|..+++..+|+..++++++..|++++.+|+..+.++|+.++.+.+++||+++++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~TL~lRm~~~~~nA~~vA~~L~~hp~V~~V~yPgL~s~  322 (421)
T d2ctza1         243 HGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHH  322 (421)
T ss_dssp             TTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTC
T ss_pred             hhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhccCCCeeEEecCCcCCC
Confidence                           11111233446889999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHhhhccC-CCceEEEEeC-CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEE
Q 021783          207 PGHELHYSQAKG-AGSVLSFLTG-SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI  284 (307)
Q Consensus       207 ~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRi  284 (307)
                      |++.++.++..+ .|++++|.+. +.+.+..|++.|+...+.+++|+..++.++|...+|..++.+.+...|..++.||+
T Consensus       323 p~~~~a~~~~~g~~G~~~sf~l~~~~~~a~~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~GI~~~liRl  402 (421)
T d2ctza1         323 PHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRL  402 (421)
T ss_dssp             TTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEE
T ss_pred             ccHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHcCCcCeeccccccccceeeCcccccchhCCHHHHHhcCCCcCeEEE
Confidence            999998777654 5789999995 56678999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCChHHHHHHHHHHH
Q 021783          285 SVGIEDVNDLISDLDKAL  302 (307)
Q Consensus       285 s~~~~~~~~~i~~l~~~l  302 (307)
                      |+|+||.+.+++.|.++|
T Consensus       403 SvGlEd~eDLi~DL~qAL  420 (421)
T d2ctza1         403 SVGLEHVEDLKAELKEAL  420 (421)
T ss_dssp             ECCSSCHHHHHHHHHHHT
T ss_pred             EeccCCHHHHHHHHHHhc
Confidence            999999999999999987

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.9e-45  Score=310.12  Aligned_cols=303  Identities=43%  Similarity=0.717  Sum_probs=282.2

Q ss_pred             CcHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            1 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         1 ~aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      |||+.+++.++++||+|++++..|.+....+...+..+|.++.+++. +.++++++++++|++|++++|.||+..+.|++
T Consensus        80 maAi~~~l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~~-~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~  158 (393)
T d1n8pa_          80 SATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTND-LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQ  158 (393)
T ss_dssp             HHHHHHHHHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESS-HHHHHHHHSCSSEEEEEECSSCTTTCCCCCHH
T ss_pred             hhHHHhhhhcccCCCeeeeeeeecccchhhhhhhhhcccceeEEeec-chHHHHHHhhhhcceeEecCcchhhhhccchh
Confidence            68887778889999999999999999999999999999999998884 56899999999999999999999999999999


Q ss_pred             HHHHHHH----HcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCC
Q 021783           81 KIAEMAH----AHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL  156 (307)
Q Consensus        81 ~l~~~~~----~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~  156 (307)
                      +|+++|+    ++|+++++|++.+.+....+.++|+|+++.|.+|+++|...+++|+++.+++.+.+.+.......|..+
T Consensus       159 ~ia~~a~~~~~~~g~~lvVDnT~atP~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~  238 (393)
T d1n8pa_         159 KVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIP  238 (393)
T ss_dssp             HHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCC
T ss_pred             hhhhhhhhhcccCCceEEEecCccCcccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCC
Confidence            9999999    678999999999999999999999999999999999999999999999988888888888888899999


Q ss_pred             ChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC-CCccEEecCCCCCCCchHHHhhhcc--CCCceEEEEeC-CHHH
Q 021783          157 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHELHYSQAK--GAGSVLSFLTG-SLAL  232 (307)
Q Consensus       157 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~  232 (307)
                      ++..+|++.++++.+..|++++.+|++.+.++|+.+ +.+.++++|++.++|++.++.++..  +.|++++|.++ +.+.
T Consensus       239 ~p~~a~ll~rgl~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~~~  318 (393)
T d1n8pa_         239 SPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEA  318 (393)
T ss_dssp             CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHH
T ss_pred             ChHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeCCHHH
Confidence            999999999999999999999999999999999876 7899999999999999999876543  45789999995 6677


Q ss_pred             HHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 021783          233 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  304 (307)
Q Consensus       233 ~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  304 (307)
                      +.+|++.|+...+.+++|+..++.++|...+|..++.+.+...|..++.||||+|+|+.|.+++.|.++|++
T Consensus       319 ~~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvGlE~~~DLi~Dl~~AL~~  390 (393)
T d1n8pa_         319 ASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQ  390 (393)
T ss_dssp             HHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcceecccCCCcCceEeCchhhccccCCHHHHHhcCCCcCEEEEEeccCCHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999998999999999999999999999999999999975

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3e-44  Score=307.04  Aligned_cols=302  Identities=26%  Similarity=0.451  Sum_probs=273.8

Q ss_pred             CcHH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            1 MAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         1 ~aal-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |||+ +++++++++||+|+++...|.++...+...+...|+++.+++..|.++++++++++|++|++++|.||+..+.|+
T Consensus        83 MaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~d~~~~~~~i~~~t~~i~~EtpsNP~l~v~Di  162 (391)
T d1cl1a_          83 AAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDV  162 (391)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGTCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             cceeeehhhcccCCCCeEEEecccccchhhhhhhcccccccccccccCccccccccccccccceeeecccCccccccccc
Confidence            7888 577889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHc--CCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCC
Q 021783           80 RKIAEMAHAH--GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  157 (307)
Q Consensus        80 ~~l~~~~~~~--~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  157 (307)
                      ++++++|+++  |+++++|++.+.+...++.++|+|+++.|.+|+++|...+.+|.++.+++ ..+.........+..++
T Consensus       163 ~~i~~~a~~~~~g~~~vVDnT~atP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~-~~~~~~~~~~~~G~~~~  241 (391)
T d1cl1a_         163 PAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNAR-CWEQLRENAYLMGQMVD  241 (391)
T ss_dssp             HHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTT-THHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHhccCCcEEEEeccccchhhhcccccccceEEeecchhccccccccccceecccc-ccccchhhhhcccccCC
Confidence            9999999775  99999999999999999999999999999999999999999999988766 44555566667888999


Q ss_pred             hhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC---CHHHHH
Q 021783          158 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG---SLALSK  234 (307)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  234 (307)
                      +..+|+..++++++..|++++.+|+..+.++|+.++.+.++++|++.++|+++++.++.++.+++++|.+.   +.+.+.
T Consensus       242 p~~a~ll~rgl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~e~~~  321 (391)
T d1cl1a_         242 ADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELA  321 (391)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHH
T ss_pred             chhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCCcceeeeecCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988888899999885   556678


Q ss_pred             HHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhcC
Q 021783          235 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  305 (307)
Q Consensus       235 ~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~~  305 (307)
                      +|++.|+...+.+++|+..++.++|...++.....+  ...|..++.||+|+|+||.+.+++.|.++|+++
T Consensus       322 ~f~d~L~l~~~a~SlG~~~SLi~~~~~~~~~~~~~~--~~~gi~~~liRlSVGlEd~eDLi~Dl~~AL~~i  390 (391)
T d1cl1a_         322 NYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQ--GEIDFSGTLIRLHIGLEDVDDLIADLDAGFARI  390 (391)
T ss_dssp             HHHTTCSSCBCCSCCCSSSCEEEEECHHHHHHTSTT--CCCCCCSCEEEEECCSSCHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCcceEeeCCCCCccceeCCcccccccCCch--HhcCCCcCEEEEEeccCCHHHHHHHHHHHHHhh
Confidence            899999998999999999999988866554433221  346888999999999999999999999999875

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.96  E-value=2.3e-29  Score=218.22  Aligned_cols=260  Identities=17%  Similarity=0.188  Sum_probs=179.1

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      ++ .++.++++|||+|+++.|+|+.+.    ..++..|++++.++.+       |++++++.++++++++++++|+||||
T Consensus        98 ~l~~~~~~l~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPtG  173 (388)
T d1gdea_          98 AFLMGLSAFLKDGEEVLIPTPAFVSYA----PAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTG  173 (388)
T ss_dssp             HHHHHHTTTCCTTCEEEEEESCCTTHH----HHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTC
T ss_pred             HHHHHHHHhcCCCCEEEECCCCcHHHH----HHHHHcCCEEEEeecccccCCCCCHHHHHHhCccCCeEEEECCCcCCCC
Confidence            45 344568899999999999999888    6677889999999873       78999999999999999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-----C----ccCCCccEEEeccccccccCCCceeEEEEEcChhHH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----R----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  142 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-----~----~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~  142 (307)
                      .+++   +++|+++|++|+++||+|++|+.....     .    ....+..++++|+||.+ +.+|+|+||++++++ +.
T Consensus       174 ~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlR~G~ii~~~~-~~  251 (388)
T d1gdea_         174 AVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTF-AMTGWRLGFVAAPSW-II  251 (388)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTT-TCGGGCCEEEECCHH-HH
T ss_pred             CcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhc-cCccccEEEEEeecc-ch
Confidence            9986   788999999999999999999743211     1    11235789999999999 678999999999865 44


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHhhcccc------HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhc
Q 021783          143 KELYFLQNAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  216 (307)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~  216 (307)
                      +.+...........+...+......++.      +....+.+.+....+.+.+....         +...        . 
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~--------~-  313 (388)
T d1gdea_         252 ERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMG---------LPTV--------K-  313 (388)
T ss_dssp             HHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------CCCC--------C-
T ss_pred             hhhhhccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhcc---------cccc--------C-
Confidence            4444444444444444444444344332      22222333334444444444331         1111        1 


Q ss_pred             cCCCceEEEEeCC-HHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChH
Q 021783          217 KGAGSVLSFLTGS-LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVN  292 (307)
Q Consensus       217 ~~~~~~~~~~~~~-~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~  292 (307)
                      ...+.++++++++ ..+..++.+.+ ++.||.+.+|..|...                     .++++|||++.  ++++
T Consensus       314 p~gg~fl~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~~---------------------~~~~iRis~~~~~e~l~  372 (388)
T d1gdea_         314 PKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKA---------------------GEGYVRISYATAYEKLE  372 (388)
T ss_dssp             CCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGG---------------------GTTBEEEECCSCHHHHH
T ss_pred             CCceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEechhhCCC---------------------CCCEEEEEecCCHHHHH
Confidence            1235566666642 22355665553 5579999988875311                     26789999985  6678


Q ss_pred             HHHHHHHHHHhcCCC
Q 021783          293 DLISDLDKALRTGPL  307 (307)
Q Consensus       293 ~~i~~l~~~l~~~~~  307 (307)
                      +.+++|.++|++..+
T Consensus       373 ~al~rL~~~l~e~k~  387 (388)
T d1gdea_         373 EAMDRMERVLKERKL  387 (388)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhcCC
Confidence            889999999987653

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.96  E-value=6.5e-29  Score=215.15  Aligned_cols=257  Identities=15%  Similarity=0.171  Sum_probs=179.0

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.++++|||+|++++|+|+.+.    ..++..|.+++.++..       |++++++.++++++++++++|+||||
T Consensus       102 al~~~~~~~~~~gd~Vlv~~P~y~~~~----~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~P~NPTG  177 (388)
T d1j32a_         102 SIFNLMLAMIEPGDEVIIPAPFWVSYP----EMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTG  177 (388)
T ss_dssp             HHHHHHHHHCCTTCEEEEESSCCTHHH----HHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTC
T ss_pred             HHHHHHHHHhCCCCEEEEcCCCcHHHH----HHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCCC
Confidence            45 345568899999999999998887    5566788888888863       78999999999999999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-----Cc-----cCCCccEEEeccccccccCCCceeEEEEEcChhH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~-----~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~  141 (307)
                      .+++   +++|+++|+++|+++|+|++|+.....     ..     ...+..+++.|+||.+ +.+|+|+||++++++ +
T Consensus       178 ~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~-~~~GlRvG~~~~~~~-~  255 (388)
T d1j32a_         178 MVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY-AMTGWRVGFLAGPVP-L  255 (388)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTT-TCTTTCCEEEECCHH-H
T ss_pred             cccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhh-hcchhHeEEEEECHH-H
Confidence            9986   888999999999999999999643221     11     1124679999999999 678999999998755 4


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHhhcc----ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhcc
Q 021783          142 AKELYFLQNAEGSGLAPFDCWICLRGV----KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  217 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~  217 (307)
                      .+.+...........+...+..+...+    +.+....+.+.++.+.+.+.+++.+.+.        -.        . .
T Consensus       256 ~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~--------~~--------~-p  318 (388)
T d1j32a_         256 VKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLE--------CP--------K-P  318 (388)
T ss_dssp             HHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCB--------CC--------C-C
T ss_pred             HHHHHHhhhhccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCE--------ec--------C-C
Confidence            444444444444444444444333332    2344555666677777777777654221        00        0 1


Q ss_pred             CCCceEEEEeCC-HHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHH
Q 021783          218 GAGSVLSFLTGS-LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVND  293 (307)
Q Consensus       218 ~~~~~~~~~~~~-~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~  293 (307)
                      ..+.++++.++. .....++.+++ .++||.+.+|..|.                       .++++|++++.  +++++
T Consensus       319 ~gg~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~-----------------------~~~~~Rls~~~~~e~l~~  375 (388)
T d1j32a_         319 DGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFG-----------------------ADDCIRLSYATDLDTIKR  375 (388)
T ss_dssp             CBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGT-----------------------CTTBEEEECCSCHHHHHH
T ss_pred             CceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEeccccC-----------------------CCCeEEEEEeCCHHHHHH
Confidence            124455555532 12244454444 45799998887643                       25789999985  56677


Q ss_pred             HHHHHHHHHhcC
Q 021783          294 LISDLDKALRTG  305 (307)
Q Consensus       294 ~i~~l~~~l~~~  305 (307)
                      .+++|.++|+++
T Consensus       376 al~rl~~~l~~l  387 (388)
T d1j32a_         376 GMERLEKFLHGI  387 (388)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            788888888754

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1.1e-28  Score=213.29  Aligned_cols=239  Identities=19%  Similarity=0.201  Sum_probs=163.7

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++++||+|++++|+|+.+.    ..++..|++++.++.+       |++++++.++++++++++++|+||||
T Consensus       103 al~~~~~~l~~~gd~vl~~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPTG  178 (382)
T d1b5pa_         103 ALFNLFQAILDPGDEVIVLSPYWVSYP----EMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTG  178 (382)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTHHH----HHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTC
T ss_pred             HHHHHHHHhCCCCCEEEECCCCcHHHH----HHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCcc
Confidence            45 455678999999999999999887    6677889999999863       89999999999999999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCcC------CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL  145 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~  145 (307)
                      .+++   +++|+++|++||++||+|++|+.-.+.      .....+..++++|+||.+ +.+|+|+||++++++ +.+.+
T Consensus       179 ~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~GlR~G~~~~~~~-~i~~~  256 (382)
T d1b5pa_         179 AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAF-AMTGWRIGYACGPKE-VIKAM  256 (382)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTT-TCGGGCCEEEECCHH-HHHHH
T ss_pred             hhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhc-cCcHhheEEEEECHH-HHHHH
Confidence            9986   888999999999999999999742221      112235789999999999 678999999998755 44445


Q ss_pred             HHHHHhcCCCCChhhHHHHhhcccc---H----HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          146 YFLQNAEGSGLAPFDCWICLRGVKT---M----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~l~~---~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      ...........+...+......+..   .    ....+....+.+.+.+.+....         +.-.        . ..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g---------~~~~--------~-p~  318 (382)
T d1b5pa_         257 ASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALG---------LKAV--------R-PS  318 (382)
T ss_dssp             HHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------CCBC--------C-CS
T ss_pred             HHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcC---------CeEe--------c-CC
Confidence            5555444444444443333332211   1    1111222223333333333211         1100        1 12


Q ss_pred             CCceEEEEeCCH-HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc
Q 021783          219 AGSVLSFLTGSL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  288 (307)
Q Consensus       219 ~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~  288 (307)
                      .+.++++.+... .+...+.+.+.++||.+.+|..|.                       .++++||+++.
T Consensus       319 gg~~~~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~-----------------------~~~~iRis~~~  366 (382)
T d1b5pa_         319 GAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFA-----------------------AFGHVRLSYAT  366 (382)
T ss_dssp             BTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGT-----------------------CTTEEEEECCS
T ss_pred             ceEEEeEeCCCCCCCHHHHHHHHHHCCEEEEeCcccC-----------------------CCCeEEEEEcC
Confidence            356677777432 235667777778899999987643                       25689999985

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1e-28  Score=215.08  Aligned_cols=264  Identities=17%  Similarity=0.185  Sum_probs=184.8

Q ss_pred             hcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHH
Q 021783           10 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE   84 (307)
Q Consensus        10 ~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~   84 (307)
                      ..++||+|++++.+|++...+|..+++..|++++.+|.+     |++.++++++++|+++++++.+|.||.+.|+++|.+
T Consensus       108 ~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i~~~t~lv~~~~v~~~tG~~~pi~~i~~  187 (405)
T d1jf9a_         108 NVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMIT  187 (405)
T ss_dssp             HCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHH
T ss_pred             ccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCcCCHHHHHHhccCCcEEEEEecCCCcccccCchHHhhh
Confidence            468999999999999999999999999999999999864     789999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHH----------------
Q 021783           85 MAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF----------------  147 (307)
Q Consensus        85 ~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~----------------  147 (307)
                      +||++|+++++|++|+.|..+ +...+++|++++|+|||+ ||+|  .|+++++++...+....                
T Consensus       188 ~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~~-Gp~G--~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (405)
T d1jf9a_         188 LAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLY-GPTG--IGILYVKEALLQEMPPWEGGGSMIATVSLSEGT  264 (405)
T ss_dssp             HHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTT-SCSS--CEEEEECHHHHTTCCCSSCSSSSEEECCTTTCC
T ss_pred             HHHHcCCeeecccceeccccccchhhcCCceeeccccccc-cCCC--ceeeeechhhhcccCcccccccccCcccccccc
Confidence            999999999999999999987 888899999999999997 7899  89999986643321100                


Q ss_pred             -----HHHhcCCCCChhhHHHHhhccccHH-HHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCc
Q 021783          148 -----LQNAEGSGLAPFDCWICLRGVKTMA-LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS  221 (307)
Q Consensus       148 -----~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (307)
                           ..+...++...........+++.+. ..++++.+..+.+.+++...          ++..+......  +..+.+
T Consensus       265 ~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~----------l~~~~~~~~~~--~~~r~~  332 (405)
T d1jf9a_         265 TWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQ----------LESVPDLTLYG--PQNRLG  332 (405)
T ss_dssp             EECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH----------HTTSTTEEEES--CTTCCS
T ss_pred             ccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhh----------hhcCCcccccC--CcCcCc
Confidence                 0011112222222333333333221 12344444444444433321          11111111111  123578


Q ss_pred             eEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHH
Q 021783          222 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA  301 (307)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~  301 (307)
                      +++|.+++.+ ...+...|..+||.++.|++++   .+           .....+ .++++|+|++..+++++++.|.++
T Consensus       333 ivsf~~~~~~-~~~~~~~L~~~gI~v~~G~~c~---~~-----------~~~~~~-~~g~iRiS~~~ynt~eDid~l~~~  396 (405)
T d1jf9a_         333 VIAFNLGKHH-AYDVGSFLDNYGIAVRTGHHCA---MP-----------LMAYYN-VPAMCRASLAMYNTHEEVDRLVTG  396 (405)
T ss_dssp             EEEEEETTCC-HHHHHHHHHHTTEECEEECTTC---HH-----------HHHHTT-CSCEEEEECCTTCCHHHHHHHHHH
T ss_pred             EEEEEcCCCC-HHHHHHHHHHCCcEEEccchhh---hh-----------HHHhcC-CCCEEEEECCCCCCHHHHHHHHHH
Confidence            9999997655 6667777888899999888732   12           111222 367899999986655556665555


Q ss_pred             Hhc
Q 021783          302 LRT  304 (307)
Q Consensus       302 l~~  304 (307)
                      |++
T Consensus       397 l~~  399 (405)
T d1jf9a_         397 LQR  399 (405)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.95  E-value=2.7e-27  Score=204.60  Aligned_cols=258  Identities=18%  Similarity=0.139  Sum_probs=189.0

Q ss_pred             HHHHh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCccccc
Q 021783            6 AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         6 ~~~~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~   77 (307)
                      ++.++ .++||+|++++++|++....|..+++..|++++.+|.+       +.+.++++++++|+++++++++|+||.+.
T Consensus        83 ~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~~~  162 (381)
T d1elua_          83 VLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVL  162 (381)
T ss_dssp             HHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBC
T ss_pred             cchhhhhcCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcccccccccccccccccccc
Confidence            33444 68999999999999999988888888999999999873       24667888889999999999999999999


Q ss_pred             cHHHHHHHHHHc----CCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH----
Q 021783           78 DIRKIAEMAHAH----GALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL----  148 (307)
Q Consensus        78 ~~~~l~~~~~~~----~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~----  148 (307)
                      |+++|.++|+++    ++++++|++|+.|..+ +...+++|++++|+|||+++|.|  .|+++.+++.........    
T Consensus       163 ~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G--~g~l~~~~~~~~~~~p~~~~~~  240 (381)
T d1elua_         163 PLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAG--VGGLYIHGDCLGEINPTYVGWR  240 (381)
T ss_dssp             CHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTT--CEEEEECTTTGGGCCCCSCCTT
T ss_pred             hhhHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccch--hhHHHhhHHHHHhcCccccccc
Confidence            999999999985    6999999999999877 77788999999999999999998  899999876543211000    


Q ss_pred             -----------------HHhcCCCCChhhHHHHhhcccc------HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCC
Q 021783          149 -----------------QNAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE  205 (307)
Q Consensus       149 -----------------~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~  205 (307)
                                       ......+......+....+++.      .+.+.++..+..+.+.+.|+..+.+.-        
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~--------  312 (381)
T d1elua_         241 SITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHC--------  312 (381)
T ss_dssp             TEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEE--------
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcCCCeEe--------
Confidence                             0001112222222222233221      233445566667777777777654311        


Q ss_pred             CCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEE
Q 021783          206 HPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS  285 (307)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis  285 (307)
                            ..+. ...+++++|.+.+....+.+.+.|+++||.++...                          .++++|+|
T Consensus       313 ------~~~~-~~~~~~vsf~~~~~~~~~~i~~~L~~~gi~v~~~~--------------------------~~~~lRis  359 (381)
T d1elua_         313 ------LATS-APQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIA--------------------------DPDCIRAC  359 (381)
T ss_dssp             ------SCSS-CCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEET--------------------------TTTEEEEE
T ss_pred             ------cCCC-CccccEEEEEcCCCCCHHHHHHHHHhCCcEEEecC--------------------------CCCEEEEe
Confidence                  1111 12467999998766556778888888898765311                          25679999


Q ss_pred             eccCChHHHHHHHHHHHhcCC
Q 021783          286 VGIEDVNDLISDLDKALRTGP  306 (307)
Q Consensus       286 ~~~~~~~~~i~~l~~~l~~~~  306 (307)
                      ++..+.++.++.|.++|++++
T Consensus       360 ~~~~nt~edid~ll~~l~e~~  380 (381)
T d1elua_         360 CHYITDEEEINHLLARLADFG  380 (381)
T ss_dssp             CCTTCCHHHHHHHHHHHTTCC
T ss_pred             cCCCCCHHHHHHHHHHHHhhC
Confidence            998888888999988888763

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=2e-27  Score=206.13  Aligned_cols=266  Identities=21%  Similarity=0.224  Sum_probs=173.8

Q ss_pred             hcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHH
Q 021783           10 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE   84 (307)
Q Consensus        10 ~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~   84 (307)
                      .+++||+|++++++|+++...+. .++..|++++.+|.+     |+++++++++++|++|++++++|+||.+.|+++|.+
T Consensus        89 ~~~~gd~Vv~~~~~~~s~~~~~~-~~~~~G~~v~~v~~~~~~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~~~~~I~~  167 (391)
T d1p3wa_          89 YQKKGKHIITSKTEHKAVLDTCR-QLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGE  167 (391)
T ss_dssp             HGGGCCEEEEETTSCHHHHHHHH-HHHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCCBCCHHHHHH
T ss_pred             hcCCCCEEEEeccccchHHHHHH-HHHHcCCEEEEeCCCCCCeEcHHHHHHhCCCCcEEEEEECCCCCCeeECCHHHHHH
Confidence            46899999999999998876665 356679999999974     789999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHH-----hcCCCCCh
Q 021783           85 MAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-----AEGSGLAP  158 (307)
Q Consensus        85 ~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~-----~~~~~~~~  158 (307)
                      +||++|+++++|++|+.|..+ +....++|++++|++||+ |++|  .|+++++++...........     ........
T Consensus       168 ~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~-g~~g--~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~  244 (391)
T d1p3wa_         168 MCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIY-GPKG--IGALYVRRKPRVRIEAQMHGGGHERGMRSGTLP  244 (391)
T ss_dssp             HHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTT-SCSS--CEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCC
T ss_pred             HhccCCcEEEEeeccccCCccccchhcccccccccccccc-CCCc--eEEEEEecchhcccCCcccCCccccCcccCcch
Confidence            999999999999999999987 888889999999999998 7777  89999987643221111000     00011111


Q ss_pred             hhHHHHh-hccccH----HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHH
Q 021783          159 FDCWICL-RGVKTM----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALS  233 (307)
Q Consensus       159 ~~~~~~~-~~l~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (307)
                      ....... ..++..    ....++..+....+.+.+....              ...+..........++.|.++... .
T Consensus       245 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~-~  309 (391)
T d1p3wa_         245 VHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIE--------------EVYLNGDLEHGAPNILNVSFNYVE-G  309 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTST--------------TEEECSCTTTSCTTEEEEEETTSC-H
T ss_pred             hhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHhhc--------------CeeecccccccCceEEEEEeCCCC-h
Confidence            1111111 111111    1112222222333333333222              221211122334567777776655 6


Q ss_pred             HHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCC----CeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          234 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTE----DLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       234 ~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                      ..+...+.  ++.++.|.++..   +.     ..++.++.+.|..+    ++||+|++.    +|+|++++.|++++++
T Consensus       310 ~~~~~~l~--~i~v~~G~~c~~---~~-----~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~  378 (391)
T d1p3wa_         310 ESLIMALK--DLAVSSGSACTS---AS-----LEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGR  378 (391)
T ss_dssp             HHHHHHTT--TEECBCCCC--------------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhC--CCEEEccccccC---Cc-----cchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence            66777775  577788876321   11     11233455555543    789999986    5667777777776654

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=5.2e-27  Score=202.36  Aligned_cols=253  Identities=17%  Similarity=0.175  Sum_probs=174.6

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++++||+|++++|.|+.+.    ..+...|.....++.+       |.+.++....++++++++++|+||||
T Consensus       100 al~~~~~~l~~~gd~vlv~~P~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPTG  175 (375)
T d1o4sa_         100 ALFNAFMALLDPGDEVIVFSPVWVSYI----PQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTG  175 (375)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTC
T ss_pred             HHHHHHHHHhCCCCEEEEccCccccch----hhhhccccccccccccccccccchhHHHHHhhccCccEEEEeCCCCCcc
Confidence            45 455668899999999999998887    4456677777777663       67888888889999999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCcC--------CccCCCccEEEeccccccccCCCceeEEEEEcChhHHH
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS--------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~--------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~  143 (307)
                      .+++   +++|+++|++|+++||+|++|......        .....+..++++|+||.+ +.+|+|+||++++++....
T Consensus       176 ~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~l~G~R~G~~~~~~~~~~~  254 (375)
T d1o4sa_         176 VVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSH-SMTGWRVGYLISSEKVATA  254 (375)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTT-TCGGGCCEEEECCHHHHHH
T ss_pred             CCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhc-cCCccccccccccccchhh
Confidence            9985   888999999999999999998743221        233457899999999999 6789999999998665443


Q ss_pred             HHHHHHHhcCCCCChhhHHHHhhcc-ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCce
Q 021783          144 ELYFLQNAEGSGLAPFDCWICLRGV-KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV  222 (307)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  222 (307)
                       ........................ +......+.+.++.+.+.+.+++..         ++-.        . ...+.+
T Consensus       255 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~g---------~~~~--------~-p~gg~f  315 (375)
T d1o4sa_         255 -VSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKMG---------VKFV--------E-PEGAFY  315 (375)
T ss_dssp             -HHHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTT---------CCCC--------C-CSBSSE
T ss_pred             -hhhhhccccccccccchhhhhhhcccchhhhHHHHHHHHHHHHHHHHhcC---------ceEe--------c-CCccEE
Confidence             333333333333333333322222 2333334455566666677676541         1111        1 113566


Q ss_pred             EEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHH
Q 021783          223 LSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDK  300 (307)
Q Consensus       223 ~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~  300 (307)
                      +|+.++..+ .+.+.+.+++.||.+.+|..|.                       .++++|||++.  +++++.+++|++
T Consensus       316 ~~~~~~~~~-~~~~~~ll~~~gV~v~pG~~F~-----------------------~~g~iRis~~~~~e~l~~al~rl~~  371 (375)
T d1o4sa_         316 LFFKVRGDD-VKFCERLLEEKKVALVPGSAFL-----------------------KPGFVRLSFATSIERLTEALDRIED  371 (375)
T ss_dssp             EEEECSSCH-HHHHHHHHHHHCEECEEGGGGT-----------------------CTTEEEEECCSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCH-HHHHHHHHHhCCEEEEEccccC-----------------------CCCeEEEEEcCCHHHHHHHHHHHHH
Confidence            777776532 4444444666799999887632                       25689999985  556677777887


Q ss_pred             HHh
Q 021783          301 ALR  303 (307)
Q Consensus       301 ~l~  303 (307)
                      +|+
T Consensus       372 ~l~  374 (375)
T d1o4sa_         372 FLN  374 (375)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            775

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.95  E-value=3.4e-27  Score=205.48  Aligned_cols=263  Identities=21%  Similarity=0.170  Sum_probs=183.7

Q ss_pred             hcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHH
Q 021783           10 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE   84 (307)
Q Consensus        10 ~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~   84 (307)
                      ..++||+|++++.+|++...+|...++..|++++.++.+     +.+.++++++++|++|.+++.+|.||...|+++|.+
T Consensus       108 ~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~~~~t~lv~i~~~~~~tG~~~p~~~i~~  187 (408)
T d1t3ia_         108 NLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQ  187 (408)
T ss_dssp             HCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHH
T ss_pred             ccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccccccHHHhhhccCCCceEEEEecccccccccCcHHHHhh
Confidence            467999999999999999999988889999999999863     789999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH---------------
Q 021783           85 MAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL---------------  148 (307)
Q Consensus        85 ~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~---------------  148 (307)
                      +|+++|+++++|++|+.|..+ +...+++|++++|+|||+ ||+|  +|+++++++.........               
T Consensus       188 ~~~~~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~~-gp~G--~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~  264 (408)
T d1t3ia_         188 LAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMC-APTG--IGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFT  264 (408)
T ss_dssp             HHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTT-SCTT--CEEEEECHHHHHHSCCCSCSTTSEEEECSSCEE
T ss_pred             hhhccCceeeeccceecccccccccccCCceEEecccccc-CCCC--ccccccchhhhhcCCceecCCcccccccccccc
Confidence            999999999999999999988 888899999999999997 7888  899999966432211000               


Q ss_pred             -----HHhcCCCCChhhHHHHhhccccHHH-HHHHHHH----HHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          149 -----QNAEGSGLAPFDCWICLRGVKTMAL-RVEKQQD----NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       149 -----~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~----~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                           .+...++........+..+++.+.. .++++.+    ..+.+.+.++..+.+.. ..+.           .....
T Consensus       265 ~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~-~~~~-----------~~~~~  332 (408)
T d1t3ia_         265 TGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRL-YGPN-----------PKHGD  332 (408)
T ss_dssp             ECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEE-ESCC-----------GGGSC
T ss_pred             cCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCccccc-cCCC-----------ccccC
Confidence                 0111122222222222233332211 1233333    33334444444443211 1111           01122


Q ss_pred             CCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHH
Q 021783          219 AGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL  298 (307)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l  298 (307)
                      ..++++|.+++.+ ...+...|..+||.++.|++++   .|..           . ....++.+|+|++..+++++++.|
T Consensus       333 ~~~iv~f~~~~~~-~~~v~~~L~~~gI~v~~G~~c~---~~~~-----------~-~~~~~g~vRiS~~~ynt~~did~l  396 (408)
T d1t3ia_         333 RAALASFNVAGLH-ASDVATMVDQDGIAIRSGHHCT---QPLH-----------R-LFDASGSARASLYFYNTKEEIDLF  396 (408)
T ss_dssp             BCSEEEEEETTBC-HHHHHHHHHTTTEECBCSCTTC---HHHH-----------H-HTTCCCCEEEECCTTCCHHHHHHH
T ss_pred             cceEEEEEeCCCC-HHHHHHHHhhCCcEEecCcccc---cHHH-----------H-hhcCCccEEEECCCCCCHHHHHHH
Confidence            4688999998765 6777888888999999998732   2211           1 112356799999986655555555


Q ss_pred             HHHHh
Q 021783          299 DKALR  303 (307)
Q Consensus       299 ~~~l~  303 (307)
                      .++|+
T Consensus       397 i~~L~  401 (408)
T d1t3ia_         397 LQSLQ  401 (408)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55554

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.95  E-value=1.4e-26  Score=200.81  Aligned_cols=256  Identities=14%  Similarity=0.097  Sum_probs=174.1

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~   77 (307)
                      .++.+++.+||+|++++|+|+.+.    ..++..|++++.++..       |++++++.+.++++++++++|+||||.++
T Consensus       108 ~~~~~~~~~Gd~vlv~~P~y~~~~----~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~v~l~~P~NPTG~~~  183 (395)
T d1xi9a_         108 LIFGALLDPGDEILVPGPSYPPYT----GLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALY  183 (395)
T ss_dssp             HHHHHHCCTTCEEEEEESCCHHHH----HHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCC
T ss_pred             hhhhhhcCCCCEEEEcCCccccch----hhhhhcCCEEEEEeccccccccchHHHHHHhhcccccEEEecCCCCCccchh
Confidence            455668899999999999998877    6678889999888752       88999999999999999999999999999


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCccCCCCcC-------CccCCCccEEEeccccccccCCCceeEEEEEcCh-h----HH
Q 021783           78 D---IRKIAEMAHAHGALLLVDNSIMSPVLS-------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-R----LA  142 (307)
Q Consensus        78 ~---~~~l~~~~~~~~~~li~D~a~~~~~~~-------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~-~----~~  142 (307)
                      +   +++|+++|++|++++++|++|......       .....+..++++|+||.+ +.+|+|+||+++... .    +.
T Consensus       184 s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~~GlRvG~~~~~~~~~~~~~~~  262 (395)
T d1xi9a_         184 DKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVY-FATGWRLGYMYFVDPENKLSEVR  262 (395)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTT-CCGGGCCEEEEEECTTCTTHHHH
T ss_pred             hHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhc-ccchhhcEeeEecCHHHHHHHHH
Confidence            6   789999999999999999999743221       122335679999999999 667999999876532 1    12


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHhh----ccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          143 KELYFLQNAEGSGLAPFDCWICLR----GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      +........ ....+...+..+..    ..+.+....+.+.++.+.+.+.|++.+.+   ...             . ..
T Consensus       263 ~~~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~---~~~-------------~-p~  324 (395)
T d1xi9a_         263 EAIDRLARI-RLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGI---STT-------------K-PQ  324 (395)
T ss_dssp             HHHHHHHHH-TCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTE---ECC-------------C-CC
T ss_pred             HHHHHhhcC-CCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCc---eec-------------C-CC
Confidence            222222222 22222222332222    22344555666677777888888765422   111             0 11


Q ss_pred             CCceEEEEeCC---HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHH
Q 021783          219 AGSVLSFLTGS---LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVND  293 (307)
Q Consensus       219 ~~~~~~~~~~~---~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~  293 (307)
                      .+.++|+.++.   .++.+.+.+.+++.||.+.+|..|...                     .++++||+++.  +++++
T Consensus       325 gg~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~---------------------~~~~~Ris~~~~~e~l~e  383 (395)
T d1xi9a_         325 GAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEY---------------------GAGHFRAVFLPPIEILEE  383 (395)
T ss_dssp             BSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGG---------------------GTTBEEEECCSCHHHHHH
T ss_pred             eeEEEeEECCCCCCCCHHHHHHHHHHhCCEEEEcChhhCCC---------------------CCCEEEEEecCCHHHHHH
Confidence            35566666642   122333334456679999888875311                     26789999974  55667


Q ss_pred             HHHHHHHHHhc
Q 021783          294 LISDLDKALRT  304 (307)
Q Consensus       294 ~i~~l~~~l~~  304 (307)
                      .+++|.+++++
T Consensus       384 al~rl~~~l~e  394 (395)
T d1xi9a_         384 AMDRFEKFMKE  394 (395)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            77888888764

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.95  E-value=2.7e-26  Score=200.24  Aligned_cols=257  Identities=14%  Similarity=0.097  Sum_probs=172.4

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcCCCceEEEEeCCCCCcc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ   74 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~~~~~~v~~~~~~n~tG   74 (307)
                      |+ .++.+++++||+|++++|+|+.+.    ..++..|++++.++++       +++++++...++++++++++|+||||
T Consensus       113 al~~~~~~l~~~Gd~Vlv~~P~y~~~~----~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~l~np~NPtG  188 (412)
T d1bw0a_         113 GILMAITAICDAGDYALVPQPGFPHYE----TVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCG  188 (412)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTHHH----HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTC
T ss_pred             chhhhhhhhhccccceeeeeccchhhh----hhhhccCccccccccccccccchhhHHHHhhhhcccccccccccccccc
Confidence            45 455678999999999999998887    6678899999999863       78899999999999999999999999


Q ss_pred             cccc---HHHHHHHHHHcCCEEEEeCccCCCCcC------------CccCCCccEEEeccccccccCCCceeEEEEEcCh
Q 021783           75 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS------------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        75 ~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~------------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      .+++   +++|+++|++|+++||+|++|..-.+.            ........++++|+||.+ +.+|+|+||++++++
T Consensus       189 ~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~-~~~G~RvG~~~~~~~  267 (412)
T d1bw0a_         189 SNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNL-VVPGWRLGWLLYVDP  267 (412)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTT-SCGGGCCEEEEEECT
T ss_pred             ccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccC-ccCCCCcccccccch
Confidence            9985   889999999999999999999732111            111223468889999999 678999999998754


Q ss_pred             hH-----HHHHHHHHHhcCCCCChhhHHHHhhcc----ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchH
Q 021783          140 RL-----AKELYFLQNAEGSGLAPFDCWICLRGV----KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE  210 (307)
Q Consensus       140 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~  210 (307)
                      ..     ...................+.+.....    +.+....+.+.++.+.+.+.+.+..++. ...          
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~-~~~----------  336 (412)
T d1bw0a_         268 HGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLA-PTM----------  336 (412)
T ss_dssp             TCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEE-ECC----------
T ss_pred             hhcchhhhhhhccccccccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhcCce-ecC----------
Confidence            32     122222222222222222222222221    2334444555666666777776544321 111          


Q ss_pred             HHhhhccCCCceEEEEeC-----CHHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEE
Q 021783          211 LHYSQAKGAGSVLSFLTG-----SLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI  284 (307)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRi  284 (307)
                            ...+.+++..++     +.....++.++| ++.||.+.+|..|.                       .++++||
T Consensus       337 ------p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg-----------------------~~g~iRi  387 (412)
T d1bw0a_         337 ------PRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH-----------------------APGFTRL  387 (412)
T ss_dssp             ------CCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGT-----------------------CTTEEEE
T ss_pred             ------CCCceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccC-----------------------CCCeEEE
Confidence                  113555666664     222344555554 45699888887643                       2578999


Q ss_pred             Eecc--CChHHHHHHHHHHHhc
Q 021783          285 SVGI--EDVNDLISDLDKALRT  304 (307)
Q Consensus       285 s~~~--~~~~~~i~~l~~~l~~  304 (307)
                      |++.  +++++.+++|++++++
T Consensus       388 s~~~~~e~l~eal~Rl~~~l~~  409 (412)
T d1bw0a_         388 TTTRPVEVYREAVERIKAFCQR  409 (412)
T ss_dssp             ECCSCHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCHHHHHHHHHHHHHHHHh
Confidence            9975  5667777888888765

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.94  E-value=2.6e-26  Score=199.14  Aligned_cols=261  Identities=13%  Similarity=0.106  Sum_probs=173.4

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC--------CChHHHHhhcC-CCceEEEEeCCCCC
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIG-PWTKLVWVESPTNP   72 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~--------~d~~~l~~~l~-~~~~~v~~~~~~n~   72 (307)
                      |+ .++.++++|||+|++++|.|+++.    ......|...+.++.        .|.+.++..+. ++++++++++||||
T Consensus       101 al~~~~~~~~~pgd~vi~~~p~~~~~~----~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NP  176 (394)
T d1c7na_         101 AVFNAVREFTKPGDGVIIITPVYYPFF----MAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNP  176 (394)
T ss_dssp             HHHHHHHHHCCTTCEEEECSSCCTHHH----HHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTT
T ss_pred             hhhhhhccccccccccccccCcccchh----hHHhhhhhcccccccccccccccchhhhhhhhhccccceEEEecccccc
Confidence            45 456678999999999999998888    666778888888775        26777777765 67999999999999


Q ss_pred             cccccc---HHHHHHHHHHcCCEEEEeCccCCCCcC----------CccCCCccEEEeccccccccCCCceeEEEEEcCh
Q 021783           73 RQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        73 tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~----------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      ||.+++   +++|+++|+++|++||+|++|..-.+.          ........+++.|+||.+ +.+|+|.|+++++++
T Consensus       177 TG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~R~g~~~~~~~  255 (394)
T d1c7na_         177 VGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTF-NIAGMGMSNIIIKNP  255 (394)
T ss_dssp             TTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHH-TCGGGCCEEEECCCH
T ss_pred             cceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccc-cccccccccccccCh
Confidence            999996   778999999999999999999743221          111124679999999999 678999999999988


Q ss_pred             hHHHHHHHHHHhcCCCCChh-hHHHHhhcc----ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhh
Q 021783          140 RLAKELYFLQNAEGSGLAPF-DCWICLRGV----KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS  214 (307)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~  214 (307)
                      .+.+.+.............. ....+....    +......+...++.+.+.+.++...       +++...        
T Consensus       256 ~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~--------  320 (394)
T d1c7na_         256 DIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNH-------PEIKAP--------  320 (394)
T ss_dssp             HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC-------TTSBCC--------
T ss_pred             hhhhhhhhhhhhccccccccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhccc-------cceeec--------
Confidence            88777766655444333222 222221111    1222222333333444444444221       111110        


Q ss_pred             hccCCCceEEEEeCCH-HHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CC
Q 021783          215 QAKGAGSVLSFLTGSL-ALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--ED  290 (307)
Q Consensus       215 ~~~~~~~~~~~~~~~~-~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~  290 (307)
                      . ...+.++++.++.. .+..++.+.| ++.||.+.+|..|..   +                  .++++|||++.  ++
T Consensus       321 ~-p~g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~---~------------------~~~~iRis~~~~~e~  378 (394)
T d1c7na_         321 L-IEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGD---G------------------GIGFERINLAAPSSV  378 (394)
T ss_dssp             C-CSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCG---G------------------GTTEEEEECCSCHHH
T ss_pred             C-CCceeEEEEECCCCCCCHHHHHHHHHHhCCEEEEcchhhCC---C------------------CCCEEEEEEeCCHHH
Confidence            1 11345566666431 1255565555 445898888887531   1                  36789999975  56


Q ss_pred             hHHHHHHHHHHHhcC
Q 021783          291 VNDLISDLDKALRTG  305 (307)
Q Consensus       291 ~~~~i~~l~~~l~~~  305 (307)
                      +++.+++|.++|+++
T Consensus       379 i~eal~rl~~~l~~L  393 (394)
T d1c7na_         379 IQESLERLNKALKDL  393 (394)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc
Confidence            778888898888764

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.94  E-value=3.3e-25  Score=194.06  Aligned_cols=256  Identities=13%  Similarity=0.114  Sum_probs=166.9

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcc-cCCcEEEEecCC-------ChHHHHhh------cCCCceEEEEe
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP-KTGVVVKRVNTC-------DLDEVASA------IGPWTKLVWVE   67 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~-------d~~~l~~~------l~~~~~~v~~~   67 (307)
                      |+ .++.++++|||+|++++|+|+++.    ..+. ..|++++.++.+       |+++++.+      ..+++++++++
T Consensus       120 al~~~~~~l~~~Gd~Vlv~~P~y~~~~----~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~  195 (428)
T d1iaya_         120 ANETIIFCLADPGDAFLVPSPYYPAFN----RDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILT  195 (428)
T ss_dssp             HHHHHHHHHCCTTCEEEEESSCCTTHH----HHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             HHHHHHHHhCCCCCEEEEccCCchHHH----HHHHHhcCCeEEEeecccccccccccccccchhhhhhccCCCceEEEEc
Confidence            45 456678999999999999998887    3333 468999998863       56665443      23688999999


Q ss_pred             CCCCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCcCC----------------ccCCCccEEEeccccccccCCC
Q 021783           68 SPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----------------PLELGADIVMHSATKFIAGHSD  128 (307)
Q Consensus        68 ~~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~----------------~~~~~~d~~~~s~~K~~~g~~g  128 (307)
                      +|+||||.+++   +++|+++|++||++||+|++|+...+..                ....+..+++.|+||.+ +.+|
T Consensus       196 nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~~G  274 (428)
T d1iaya_         196 NPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM-GLPG  274 (428)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTS-SCGG
T ss_pred             cCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEecCCCcc-cCCC
Confidence            99999999986   7899999999999999999997332210                11224579999999999 6789


Q ss_pred             ceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccc---c----HHHHHHHHHHHHHHHHHHHhcCCCccEEecC
Q 021783          129 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---T----MALRVEKQQDNAQKIAEFLASHPRVKKVNYA  201 (307)
Q Consensus       129 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  201 (307)
                      +|+|+++..++.+.+...........  +...+..+.+.+.   .    ++...+.+.++.+.+.+.|+..         
T Consensus       275 lRiG~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~---------  343 (428)
T d1iaya_         275 FRVGIIYSFNDDVVNCARKMSSFGLV--STQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV---------  343 (428)
T ss_dssp             GCEEEEEESCHHHHHHHHHHHTTSCC--CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------
T ss_pred             cccccccccccchhhhhhhhhccccc--ccccccchhhhhhhhccccccccccccccchhHHHHHHHHHhC---------
Confidence            99999999877777666555443322  2222222212111   1    1222233334444455555432         


Q ss_pred             CCCCCCchHHHhhhccCCCceEEEEeC------CHHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHh
Q 021783          202 GLPEHPGHELHYSQAKGAGSVLSFLTG------SLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA  274 (307)
Q Consensus       202 ~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~  274 (307)
                      +++-.        . ...+.++|+.+.      ..+...++.+.| ++.||.+.+|..|..                   
T Consensus       344 gi~~~--------~-p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~-------------------  395 (428)
T d1iaya_         344 GIKCL--------K-NNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFEC-------------------  395 (428)
T ss_dssp             TCCBC--------C-CSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC-------------------
T ss_pred             CCEEe--------c-CCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCC-------------------
Confidence            11111        1 113556677763      223344455544 457999988876431                   


Q ss_pred             cCCCCCeEEEEecc---CChHHHHHHHHHHHhc
Q 021783          275 RGLTEDLVRISVGI---EDVNDLISDLDKALRT  304 (307)
Q Consensus       275 ~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~  304 (307)
                        ..++++|||++.   +.+++.+++|+++|..
T Consensus       396 --~~~g~~Ris~a~~~~~~l~~al~Rl~~~l~~  426 (428)
T d1iaya_         396 --QEPGWFRVCFANMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             --SSSSEEEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred             --CCCCEEEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence              136889999974   2467788888888754

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1e-25  Score=193.15  Aligned_cols=261  Identities=15%  Similarity=0.168  Sum_probs=170.7

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC--------CChHHHHhhcC-CCceEEEEeCCCCC
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIG-PWTKLVWVESPTNP   72 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~--------~d~~~l~~~l~-~~~~~v~~~~~~n~   72 (307)
                      ++ .++.++++|||+|++++|.|+.+.    ..++..|.+++.++.        .|++++++.+. ++++++++++|+||
T Consensus        70 ~l~~~~~~l~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NP  145 (361)
T d1d2fa_          70 MVSELIRQWSETGEGVVIHTPAYDAFY----KAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNP  145 (361)
T ss_dssp             HHHHHHHHSSCTTCEEEEEESCCHHHH----HHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTT
T ss_pred             HHHHHhhhccccccccccccccccchh----HHHHhhcceEEeecccccccccccccccchhhcccCCceeEEecccccc
Confidence            45 455668899999999999998887    556677888887765        27899998885 68999999999999


Q ss_pred             cccccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-------CccCCCccEEEeccccccccCCCceeEEEEEcChhHH
Q 021783           73 RQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  142 (307)
Q Consensus        73 tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~  142 (307)
                      ||.+++   +++|+++|+++|+++|+|++|....+.       .....+..+++.|+||.+ +.+|+|+|++++......
T Consensus       146 TG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~-~~~g~R~g~~~~~~~~~~  224 (361)
T d1d2fa_         146 TGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSF-NIPALTGAYGIIENSSSR  224 (361)
T ss_dssp             TCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHH-TCGGGCCEEEEECSHHHH
T ss_pred             cccccchhhhhhhhhhhhhhheeeeeccccccccccccccccccccccccccccccccccc-ccccccceeeecchhHHH
Confidence            999986   889999999999999999999743221       112234679999999999 677999999988766554


Q ss_pred             HHH-HHHHHhcC-CCCChhhHHHHhhccc----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhc
Q 021783          143 KEL-YFLQNAEG-SGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  216 (307)
Q Consensus       143 ~~~-~~~~~~~~-~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~  216 (307)
                      ... .......+ +...............    ..........++.+.+.+.+....       +++.-.        .+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-------~~~~~~--------~p  289 (361)
T d1d2fa_         225 DAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAF-------PELNWQ--------IP  289 (361)
T ss_dssp             HHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC-------SSCCCC--------CC
T ss_pred             HHHhhhcccccccccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhc-------cccccc--------cc
Confidence            433 33332222 2233222222222221    112222333333444444433221       111111        11


Q ss_pred             cCCCceEEEEeCC-HHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChH
Q 021783          217 KGAGSVLSFLTGS-LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVN  292 (307)
Q Consensus       217 ~~~~~~~~~~~~~-~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~  292 (307)
                       ..+.++++.+.. ..+..++.++| ++.||.+.+|..|...                     +++++|||++.  ++++
T Consensus       290 -~gg~~~~~~l~~~~~~~~~~~~~Ll~~~gv~v~pG~~F~~~---------------------~~~~vRis~~~~~e~l~  347 (361)
T d1d2fa_         290 -QSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEE---------------------GRGFVRLNAGCPRSKLE  347 (361)
T ss_dssp             -SBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGG---------------------GTTEEEEECCSCHHHHH
T ss_pred             -CceeEEEEEccCCCCCHHHHHHHHHHhCCEEEEeccccCCC---------------------CCCEEEEEEcCCHHHHH
Confidence             124556666632 12356676665 5669999888764311                     35789999975  6777


Q ss_pred             HHHHHHHHHHhcC
Q 021783          293 DLISDLDKALRTG  305 (307)
Q Consensus       293 ~~i~~l~~~l~~~  305 (307)
                      +.+++|.++++++
T Consensus       348 ~al~rl~~~l~~l  360 (361)
T d1d2fa_         348 KGVAGLINAIRAV  360 (361)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            8889999988764

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.94  E-value=2.3e-26  Score=199.39  Aligned_cols=254  Identities=18%  Similarity=0.140  Sum_probs=172.5

Q ss_pred             cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcC
Q 021783           11 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG   90 (307)
Q Consensus        11 ~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~~~   90 (307)
                      +.|||+|+++.|.|+.+.    ..++..|.+...++. |.+.+++.++++++++++++||||||.+..       +..++
T Consensus       152 ~~pg~~Vv~~~P~y~~Y~----~~~~~~~~~~~~~~~-D~~~~~~~~~~~~~ii~l~sPnNPtG~l~~-------~v~~~  219 (425)
T d2hoxa1         152 DAPESKVVAHAPFYPVFR----EQTKYFDKKGYVWAG-NAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKG  219 (425)
T ss_dssp             TSCCEEEEECSSCCHHHH----HHHHHSCBTTEEEEE-EGGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTT
T ss_pred             CCCCCEEEEecCccccHH----HHHHHcCCCCCccCC-CHHHHHhhCCCCceEEEEECCCCCCcchhh-------hhhhC
Confidence            579999999999998776    444455555444443 678888888899999999999999998742       22358


Q ss_pred             CEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccc
Q 021783           91 ALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  169 (307)
Q Consensus        91 ~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  169 (307)
                      +.+|+|++|..+.+. .......++++.|+||.+ |.+|+|+||++++++.+.+.+...........+...+..+..+++
T Consensus       220 ~~~I~DEaY~~~~f~~~~~~~~~~Ivl~S~SK~f-glaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~  298 (425)
T d2hoxa1         220 CKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFT-GHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLK  298 (425)
T ss_dssp             CEEEEECTTCSTTTSCCCSCBCCSEEEEEHHHHT-SCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred             CEEEEeccccCccccchhhhcCCeEEEEeCHHhc-cCcchheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhh
Confidence            999999999755433 444557899999999999 789999999999988887777776666655555555554444332


Q ss_pred             ---------------cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHH-hhhccCCCceEEEEeCCHHHH
Q 021783          170 ---------------TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH-YSQAKGAGSVLSFLTGSLALS  233 (307)
Q Consensus       170 ---------------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  233 (307)
                                     .+....+.+.++.+.+.+.++...   .+..+.+.+ ++.-.+ .......+.+.++++...+ .
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~---~~~l~~~p~-~~~~~f~~~~~~~~~~f~wl~~~~~~-~  373 (425)
T d2hoxa1         299 EVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSD---RFSYQELPQ-SEYCNYFRRMRPPSPSYAWVKCEWEE-D  373 (425)
T ss_dssp             HHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSS---SEECCCCCS-CEEETTTTEEECCCCSEEEEEECSGG-G
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CceeeccCC-ccceeeeeeccCCCcceeeeeCCCCh-H
Confidence                           223334455566666777776654   222332221 111111 1111223556777775433 3


Q ss_pred             HHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHhc
Q 021783          234 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  304 (307)
Q Consensus       234 ~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~~  304 (307)
                      ..+.+.|+++||.+++|..|                      |.+++++|||+..  +++++.+++|++++++
T Consensus       374 ~~~~~lL~e~gI~v~pGs~F----------------------G~~~~yvRisl~~~~e~ld~~l~rL~~~v~a  424 (425)
T d2hoxa1         374 KDCYQTFQNGRINTQNGVGF----------------------EASSRYVRLSLIKTQDDFDQLMYYLKDMVKA  424 (425)
T ss_dssp             CSHHHHHHHTTEECEEGGGG----------------------TSCTTEEEEECSSCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCEEEEechhc----------------------CCCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence            33445566789999998873                      3356889999864  5668999999998864

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.93  E-value=5.5e-25  Score=192.85  Aligned_cols=256  Identities=15%  Similarity=0.124  Sum_probs=166.2

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcc-cCCcEEEEecCC-------ChHHHHhhcC------CCceEEEEe
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP-KTGVVVKRVNTC-------DLDEVASAIG------PWTKLVWVE   67 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~-------d~~~l~~~l~------~~~~~v~~~   67 (307)
                      |+ .++.++++|||+|++++|.|+.+.    ..++ ..|++++.++.+       |++.+++.+.      .++++++++
T Consensus       121 al~~~~~~l~~pGd~Vlv~~P~y~~~~----~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~  196 (431)
T d1m7ya_         121 ANETFIFCLADPGEAVLIPTPYYPGFD----RDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVT  196 (431)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTTHH----HHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCchhHH----HHHHHhcCceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEec
Confidence            45 455668899999999999998877    3343 468999888763       5667766553      578999999


Q ss_pred             CCCCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCcC------------------CccCCCccEEEeccccccccC
Q 021783           68 SPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS------------------RPLELGADIVMHSATKFIAGH  126 (307)
Q Consensus        68 ~~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~------------------~~~~~~~d~~~~s~~K~~~g~  126 (307)
                      +|+||||.+++   +++|+++|++||+++|+|++|+...+.                  .....+..+++.|+||.+ +.
T Consensus       197 nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~  275 (431)
T d1m7ya_         197 NPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDL-GL  275 (431)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSS-CC
T ss_pred             CccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccc-cC
Confidence            99999999986   888999999999999999999732211                  011124579999999999 67


Q ss_pred             CCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhcc---c----cHHHHHHHHHHHHHHHHHHHhcCCCccEEe
Q 021783          127 SDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV---K----TMALRVEKQQDNAQKIAEFLASHPRVKKVN  199 (307)
Q Consensus       127 ~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  199 (307)
                      +|+|+|+++.+++.+............. .+. .+....+.+   .    .+....+.+.++.+.+.+.|++. ++ .+ 
T Consensus       276 ~G~RiG~~~~~~~~i~~~~~~~~~~~~~-~~~-~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gi-~~-  350 (431)
T d1m7ya_         276 PGFRVGAIYSNDDMVVAAATKMSSFGLV-SSQ-TQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GI-SC-  350 (431)
T ss_dssp             GGGCEEEEEESCHHHHHHHHHHGGGSCC-CHH-HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TC-EE-
T ss_pred             CCCccceeccchhhhHHHHHHHhccccc-ccc-ccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcC-Cc-EE-
Confidence            8999999999887665554443332222 222 121111111   1    12222333344444555555432 11 00 


Q ss_pred             cCCCCCCCchHHHhhhccCCCceEEEEeC------CHHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHH
Q 021783          200 YAGLPEHPGHELHYSQAKGAGSVLSFLTG------SLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVR  272 (307)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~  272 (307)
                            .        . ...+.++|+.++      ..+...++.+.+ ++.||.+.+|..|..                 
T Consensus       351 ------~--------~-p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~-----------------  398 (431)
T d1m7ya_         351 ------L--------N-GNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHC-----------------  398 (431)
T ss_dssp             ------C--------C-CCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC-----------------
T ss_pred             ------e--------c-CCceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCC-----------------
Confidence                  0        1 113556667663      233344555554 557999988876431                 


Q ss_pred             HhcCCCCCeEEEEecc---CChHHHHHHHHHHHhc
Q 021783          273 QARGLTEDLVRISVGI---EDVNDLISDLDKALRT  304 (307)
Q Consensus       273 ~~~~~~~~~iRis~~~---~~~~~~i~~l~~~l~~  304 (307)
                          ..++++||+++.   +++++.+++|++++++
T Consensus       399 ----~~~~~~Ri~~a~~~e~~l~~al~rL~~~l~~  429 (431)
T d1m7ya_         399 ----TEPGWFRVCFANLPERTLDLAMQRLKAFVGE  429 (431)
T ss_dssp             ----SSTTEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred             ----CCCCEEEEEeCcCCHHHHHHHHHHHHHHHHH
Confidence                136789999974   3467778888888865

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.93  E-value=6.5e-25  Score=191.70  Aligned_cols=261  Identities=17%  Similarity=0.119  Sum_probs=174.8

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC---------------ChHHHHhhcCCCceEEEE
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---------------DLDEVASAIGPWTKLVWV   66 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---------------d~~~l~~~l~~~~~~v~~   66 (307)
                      |+ .++.++++|||+|++++|+|+.+.    ..+...|.+++.++.+               +++++.+...++++++++
T Consensus       102 al~~~~~~l~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  177 (418)
T d2r5ea1         102 ALYATIQGHVDEGDEVIIIEPFFDCYE----PMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIII  177 (418)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTTEEEEEE
T ss_pred             hhhhhhhhccccccceeccccccchhh----HHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhhccccceec
Confidence            45 455568999999999999999888    6677789999888762               568888888899999999


Q ss_pred             eCCCCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCcC---------CccCCCccEEEeccccccccCCCceeEEE
Q 021783           67 ESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---------RPLELGADIVMHSATKFIAGHSDVMAGVL  134 (307)
Q Consensus        67 ~~~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~---------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~  134 (307)
                      ++|+||||.+++   +++|+++|++||+++|+|++|......         .....+..+++.|+||.+ +.+|+|+||+
T Consensus       178 ~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~-~~pGlRiG~~  256 (418)
T d2r5ea1         178 NTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTF-SLTGWKIGWA  256 (418)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHT-TCGGGCCEEE
T ss_pred             CCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccc-cCCCcccccc
Confidence            999999999996   778999999999999999999643221         122335779999999999 6689999999


Q ss_pred             EEcChhHHHHHHHHHHhcCCCCChhhHHHHhhc----------cc-cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCC
Q 021783          135 AVKGERLAKELYFLQNAEGSGLAPFDCWICLRG----------VK-TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL  203 (307)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------l~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l  203 (307)
                      +++++ +.+.+...........+...+..+...          .+ .+....+.+..+.+.+.+.|++.. + .+..+  
T Consensus       257 ~~~~~-~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~-~~~~P--  331 (418)
T d2r5ea1         257 YGPEA-LLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVG-M-NPTVP--  331 (418)
T ss_dssp             ESCHH-HHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHTT-C-EEEEC--
T ss_pred             cccch-hhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhcC-C-cccCC--
Confidence            98755 445555555444444443333322211          11 233334455566666777776542 2 11111  


Q ss_pred             CCCCchHHHhhhccCCCceEEEEeCC------------HHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHH
Q 021783          204 PEHPGHELHYSQAKGAGSVLSFLTGS------------LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVE  270 (307)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~  270 (307)
                                    ..+.++|+.+.+            ..+..++.+.| ++.||.+.+|..|.....            
T Consensus       332 --------------~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~------------  385 (418)
T d2r5ea1         332 --------------QGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPN------------  385 (418)
T ss_dssp             --------------SBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGG------------
T ss_pred             --------------CceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCC------------
Confidence                          134555655521            11244555544 456999999887542100            


Q ss_pred             HHHhcCCCCCeEEEEecc--CChHHHHHHHHHHHh
Q 021783          271 VRQARGLTEDLVRISVGI--EDVNDLISDLDKALR  303 (307)
Q Consensus       271 ~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l~  303 (307)
                          ...+++++|||++.  +++++.+++|++.+.
T Consensus       386 ----~~~g~~~iRis~~~~~e~l~~a~~rl~~~lg  416 (418)
T d2r5ea1         386 ----KHLGEDFVRYCFFKKDENLQKAAEILRKWKG  416 (418)
T ss_dssp             ----HHHHTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred             ----ccCCCCEEEEEecCCHHHHHHHHHHHHHHHc
Confidence                01136789999975  566777888777664

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=5.1e-25  Score=190.70  Aligned_cols=261  Identities=17%  Similarity=0.194  Sum_probs=176.1

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG~   75 (307)
                      ++ .++.+++++||+|++++|.|+.+.    ..++..|++++.++.+      +.+.+...+.++++++++++|+||||.
T Consensus        99 ~l~~~~~~l~~~gd~V~i~~P~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~  174 (389)
T d2gb3a1          99 AILFSFAVIANPGDEILVLEPFYANYN----AFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGV  174 (389)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTHHH----HHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSCTTTCC
T ss_pred             cccccccccccCCCeEEEeCCCCcccc----ccccccCccccccccccccccchhhhhhhhcccCccEEEeCCCCccccc
Confidence            45 355568899999999999998887    6667788888888774      345566667789999999999999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCccCCCCcC------CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH
Q 021783           76 ICD---IRKIAEMAHAHGALLLVDNSIMSPVLS------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  146 (307)
Q Consensus        76 ~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~  146 (307)
                      +++   +++|+++|++||+++|+|++|..-...      .....+..+++.|+||.+ +.+|+|+||++++++.+.....
T Consensus       175 ~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~-~~~GlRiG~~~~~~~~i~~~~~  253 (389)
T d2gb3a1         175 VYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKF-SACGARVGCLITRNEELISHAM  253 (389)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTT-TCGGGCCEEEECSCHHHHHHHH
T ss_pred             cchHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccccccccccc-cCcccceeeeeccchhHHHHHh
Confidence            986   889999999999999999999743221      112235678899999999 5689999999998877766555


Q ss_pred             HHHHhcCCCCChhhHHHHhhccc----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCce
Q 021783          147 FLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV  222 (307)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  222 (307)
                      .......+ .....+......+.    .++...+...++.+.+.+.|++......   .             . ...+.+
T Consensus       254 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~---~-------------~-p~~g~~  315 (389)
T d2gb3a1         254 KLAQGRLA-PPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRF---T-------------K-PSGAFY  315 (389)
T ss_dssp             HHHHHSCC-CCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCB---C-------------C-CSBSSE
T ss_pred             hhhhcccc-ccccccccccccccccchhcccccccccccchhhhhhhhhhccccc---c-------------C-CCceEE
Confidence            44433332 22333333222222    2333445556666777777876542110   0             0 224667


Q ss_pred             EEEEeCCH---HHHHHHHhc--CCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHH
Q 021783          223 LSFLTGSL---ALSKHVVET--TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLI  295 (307)
Q Consensus       223 ~~~~~~~~---~~~~~~~~~--l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i  295 (307)
                      ++++++..   +.++.++++  +...|+.+.+|..|...                  .|.+++++||+++.  +++++.+
T Consensus       316 ~~~~lp~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~------------------~~~~~~~iRis~~~~~~~l~~a~  377 (389)
T d2gb3a1         316 ITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLT------------------PGLGKKEIRIACVLEKDLLSRAI  377 (389)
T ss_dssp             EEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSS------------------TTTTSSEEEEECCSCHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHhhhhhhCCEEEEeCcccccC------------------CCCCCCEEEEEEcCCHHHHHHHH
Confidence            77877433   234444443  23457877777653321                  23357899999975  4556667


Q ss_pred             HHHHHHHhc
Q 021783          296 SDLDKALRT  304 (307)
Q Consensus       296 ~~l~~~l~~  304 (307)
                      +.|.++|++
T Consensus       378 ~~L~~~lk~  386 (389)
T d2gb3a1         378 DVLMEGLKM  386 (389)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            778777764

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.93  E-value=2.4e-25  Score=193.73  Aligned_cols=261  Identities=13%  Similarity=0.107  Sum_probs=167.0

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChH-------HHHhhcCCCceEEEEeCCC
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLD-------EVASAIGPWTKLVWVESPT   70 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~-------~l~~~l~~~~~~v~~~~~~   70 (307)
                      ++ .++.+++++||+|++++|+|+.+.    ..+...|++++.++.+    +..       ...+..++.+.++++++|+
T Consensus       106 al~~~~~~l~~~gd~v~~~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  181 (403)
T d1wsta1         106 ALDLIGRVFLNPGDPIVVEAPTYLAAI----QAFKYYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQ  181 (403)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCCCEEEECCSSC
T ss_pred             HHHHHHHHHhhcCCccccCCCcchhhh----HHHhhccccceeEeecccCCccccccccchhhhhccccccccccccccC
Confidence            44 344568899999999999998888    6677889999888864    121       2222223566677888999


Q ss_pred             CCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCc--------CCccCCCccEEEeccccccccCCCceeEEEEEcCh
Q 021783           71 NPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL--------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        71 n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~--------~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      ||||.+++   +++|+++|++||++||+|++|....+        ......+..++++|+||++ + +|+|+||++++++
T Consensus       182 NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~-~G~RiG~~i~~~~  259 (403)
T d1wsta1         182 NPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKIL-A-PGFRIGWVAAHPH  259 (403)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTT-C-GGGCCEEEEECHH
T ss_pred             CCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEcccccee-c-CcccccccccchH
Confidence            99999986   77899999999999999999963211        1233457899999999998 5 6999999999865


Q ss_pred             hHHHHHHHHHHhcCCCCChhhHHHHhhc--ccc----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHh
Q 021783          140 RLAKELYFLQNAEGSGLAPFDCWICLRG--VKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  213 (307)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~  213 (307)
                      .+ +.+...........+...+......  ...    +....+....+.+.+.+.+.+...      .++.        .
T Consensus       260 ~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~------~~~~--------~  324 (403)
T d1wsta1         260 LI-RKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMP------EGVE--------W  324 (403)
T ss_dssp             HH-HHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------TTCE--------E
T ss_pred             HH-HHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhcc------CCeE--------E
Confidence            44 4343333333222333222222111  111    122233334444455555543210      0110        0


Q ss_pred             hhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc---CC
Q 021783          214 SQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---ED  290 (307)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---~~  290 (307)
                      .. ...+.++++.++...+...+.+.|.++||.+.+|+.|..                   .+..++++||+++.   ++
T Consensus       325 ~~-p~gg~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~-------------------~~~~~~~iRi~~~~~~~~~  384 (403)
T d1wsta1         325 TK-PEGGMFVRVTLPEGIDTKLMMERAVAKGVAYVPGEAFFV-------------------HRDKKNTMRLNFTYVPEET  384 (403)
T ss_dssp             CC-CSBSSEEEEECCTTCCTTTTHHHHHHTTEECEEGGGGST-------------------TCCCCSEEEEECSSSCHHH
T ss_pred             eC-CCceeEEEEECCCCCCHHHHHHHHHHCCEEEEechhhcC-------------------CCCCCCEEEEEecCCCHHH
Confidence            01 123567777776544466777778888999988876432                   12246889999974   45


Q ss_pred             hHHHHHHHHHHHhc
Q 021783          291 VNDLISDLDKALRT  304 (307)
Q Consensus       291 ~~~~i~~l~~~l~~  304 (307)
                      +++.+++|.+++++
T Consensus       385 l~~al~rl~~~l~~  398 (403)
T d1wsta1         385 IREGVRRLAETIKE  398 (403)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            66777777777653

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.93  E-value=2.8e-25  Score=190.01  Aligned_cols=247  Identities=14%  Similarity=0.147  Sum_probs=167.4

Q ss_pred             HHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCcccccc--
Q 021783            7 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD--   78 (307)
Q Consensus         7 ~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~--   78 (307)
                      +...+. |+.+++..|.|..+.    ......++.++.++..      ..+++.+.+.++++++++++|+||||..++  
T Consensus        90 ~~~~~~-~~~~~v~~p~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~l~nP~NPtG~~~~~e  164 (355)
T d1lc5a_          90 VASGLK-PRRAMIVTPGFAEYG----RALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERP  164 (355)
T ss_dssp             HHHHHC-CSEEEEEESCCTHHH----HHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCCHH
T ss_pred             HHhhhc-cccccccCCccceec----cccccccccceeeeeeccCCccceeeeeeccccccceeeeecccCcccccchhh
Confidence            333343 455556677776655    3345567777777763      235677778889999999999999999986  


Q ss_pred             -HHHHHHHHHHcCCEEEEeCccCCCCc------CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHh
Q 021783           79 -IRKIAEMAHAHGALLLVDNSIMSPVL------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  151 (307)
Q Consensus        79 -~~~l~~~~~~~~~~li~D~a~~~~~~------~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~  151 (307)
                       +++|+++|++|++++|+|++|.....      ......+..+++.|+||.+ |.+|+|+||++++++.+...+....  
T Consensus       165 ~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~l~GlR~G~~i~~~~~~~~~~~~~~--  241 (355)
T d1lc5a_         165 LLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFY-AIPGLRLGYLVNSDDAAMARMRRQQ--  241 (355)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTT-TCTTTCCEEEECCCHHHHHHHHHHS--
T ss_pred             hhhhhhhhccccccccccccceeeeeeecccccccccccccceeeccccccc-ccccccccceeccchhhhHHHHhhc--
Confidence             77888999999999999999963221      1233446789999999999 6789999999998776655544322  


Q ss_pred             cCCCCChhhHHHHhhccc---cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeC
Q 021783          152 EGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  228 (307)
Q Consensus       152 ~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  228 (307)
                      .....+...+..+...++   .+....+.+.+..+.+.+.+.+...+.  ..                .+.++++++.++
T Consensus       242 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~----------------p~~~~f~~~~~~  303 (355)
T d1lc5a_         242 MPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLT--VY----------------PGRANYLLLRCE  303 (355)
T ss_dssp             CTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEE--EC----------------CCSSSEEEEEES
T ss_pred             CCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCcE--EC----------------CCCCEEEEEECC
Confidence            223444455555555554   344555566666677777777654321  11                124677788886


Q ss_pred             CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHHHHH
Q 021783          229 SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLDKAL  302 (307)
Q Consensus       229 ~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~~~l  302 (307)
                      ..  ..++.+.|.++||.++.|..|.                     +..++++|||++. ++++++++.|++.|
T Consensus       304 ~~--~~~~~~~L~~~gv~vr~~~~f~---------------------~~~~~~iRis~~~~~e~~~li~aL~~il  355 (355)
T d1lc5a_         304 RE--DIDLQRRLLTQRILIRSCANYP---------------------GLDSRYYRVAIRSAAQNERLLAALRNVL  355 (355)
T ss_dssp             CT--TCCHHHHHHTTTEECEECTTST---------------------TCCTTEEEEECCCHHHHHHHHHHHHHHC
T ss_pred             CC--HHHHHHHHHHCCcEEEeCccCC---------------------CCCCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence            42  4456677778899998876532                     2246889999974 56666677666653

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=2.3e-24  Score=185.19  Aligned_cols=253  Identities=17%  Similarity=0.149  Sum_probs=171.6

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC--------CChHHHHhhcCCCceEEEEeCCCCCc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIGPWTKLVWVESPTNPR   73 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~--------~d~~~l~~~l~~~~~~v~~~~~~n~t   73 (307)
                      |+ .++.+++++||.|++++|+|+.+.    ..++..|.+++.++.        .|++++++.++++++++++++|+|||
T Consensus        90 al~~~~~~l~~~~d~v~~~~p~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPt  165 (368)
T d1v2da_          90 ALYVLLQSLVGPGDEVVVLEPFFDVYL----PDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPT  165 (368)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTT
T ss_pred             HHHHHhhccccccccccccCCcchhhh----hHHHhcCCccceeccccccccccCCHHHHHHhhccCceEEEEcCCCCcc
Confidence            44 355568899999999999999888    556677888877765        28899999999999999999999999


Q ss_pred             ccccc---HHHHHHHHHHcCCEEEEeCccCCCCcCC------ccCCCccEEEeccccccccCCCceeEEEEEcChhHHHH
Q 021783           74 QQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE  144 (307)
Q Consensus        74 G~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~------~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~  144 (307)
                      |..++   +++|+++|++||+++|+|++|.......      ....+..+++.|+||.+ +.+|+|+|+++.+++.... 
T Consensus       166 G~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~-~~~G~R~g~~~~~~~~~~~-  243 (368)
T d1v2da_         166 GLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRL-EATGYRVGWIVGPKEFMPR-  243 (368)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHT-TCGGGCCEEEECCTTTHHH-
T ss_pred             cccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccccc-cccccccccccccccccch-
Confidence            99996   8889999999999999999997443321      11234678889999988 6679999999988765443 


Q ss_pred             HHHHHHhcCCCCChhhHHHHhhcc------ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          145 LYFLQNAEGSGLAPFDCWICLRGV------KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      +...........+...+......+      +.+....+.+.++.+.+.+.++... + .+..                ..
T Consensus       244 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~-~~~~----------------p~  305 (368)
T d1v2da_         244 LAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMG-L-RVYV----------------PE  305 (368)
T ss_dssp             HHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTT-C-CEEC----------------CS
T ss_pred             hhhhhhccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhcC-c-EEec----------------CC
Confidence            444333333333333222222221      2233334445666666777776542 1 1111                11


Q ss_pred             CCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc--CChHHHHH
Q 021783          219 AGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLIS  296 (307)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~--~~~~~~i~  296 (307)
                      .+.++++.+++.+ ..+++   .+.||.+++|..|...                   +..++++|||++.  +++++.++
T Consensus       306 g~~~~~~~l~~~~-~~~ll---~~~gI~v~pg~~F~~~-------------------~~~~~~iRis~~~~~e~i~~ai~  362 (368)
T d1v2da_         306 GTYFLMAELPGWD-AFRLV---EEARVALIPASAFYLE-------------------DPPKDLFRFAFCKTEEELHLALE  362 (368)
T ss_dssp             BSSEEEEECTTCC-HHHHH---HHTCEECEEGGGGCSS-------------------SCCTTEEEEECCSCHHHHHHHHH
T ss_pred             ceeEEEEeCCccH-HHHHH---HhCCEEEEechhhCCC-------------------CCCCCEEEEEecCCHHHHHHHHH
Confidence            3567778887655 55554   3578999888765321                   1246889999974  45556666


Q ss_pred             HHHHHH
Q 021783          297 DLDKAL  302 (307)
Q Consensus       297 ~l~~~l  302 (307)
                      +|+++|
T Consensus       363 rL~~~l  368 (368)
T d1v2da_         363 RLGRVV  368 (368)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            666543

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=6.3e-26  Score=198.37  Aligned_cols=263  Identities=13%  Similarity=0.102  Sum_probs=168.7

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC----ChHHHHhhcC---------CCceEEEEeC
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIG---------PWTKLVWVES   68 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~l~---------~~~~~v~~~~   68 (307)
                      |+ .++.++++|||+|++++|.|+.+.    ..++..|++++.++.+    +++.++..+.         +.+.++++++
T Consensus       116 al~~~~~~~~~~Gd~Vlv~~P~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (420)
T d1vp4a_         116 ALDLIGKLFLDDESYCVLDDPAYLGAI----NAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSN  191 (420)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCHHHH----HHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECS
T ss_pred             hHHHHHHhhhccccccccccccccchh----HHHHHHhhhcccccccccccccchhhhhhhhhHHHhhccccceeeEecC
Confidence            45 345567899999999999998887    6677889999998874    4555443321         2344556779


Q ss_pred             CCCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCcC--------CccCCCccEEEeccccccccCCCceeEEEEEc
Q 021783           69 PTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS--------RPLELGADIVMHSATKFIAGHSDVMAGVLAVK  137 (307)
Q Consensus        69 ~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~--------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~  137 (307)
                      |+||||.+++   +++|+++|++|++++|+|++|+...+.        .....+..++++|++|++ + +|+|+||++++
T Consensus       192 p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~-~-~G~RiG~~~~~  269 (420)
T d1vp4a_         192 FHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVL-A-PGLRIGMVAGS  269 (420)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTT-C-GGGCEEEEECC
T ss_pred             CCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEecccccc-c-ccccccccccc
Confidence            9999999985   789999999999999999999743221        112346778999999987 4 79999999987


Q ss_pred             ChhHHHHHHHHHHhcCCCCChhhHHHHhhcc------ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHH
Q 021783          138 GERLAKELYFLQNAEGSGLAPFDCWICLRGV------KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL  211 (307)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~  211 (307)
                      ++ +.+.+...........+...+..+...+      +.+....+...+..+.+.+.+++.          +.+.+++..
T Consensus       270 ~~-~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~----------~~~~~g~~~  338 (420)
T d1vp4a_         270 KE-FIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEY----------FSDIPGVKW  338 (420)
T ss_dssp             HH-HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHH----------STTSTTCEE
T ss_pred             ch-hhhhhhhhhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhh----------hccCCCcEE
Confidence            55 4444444443333333333333322222      112223334444444555555432          111222211


Q ss_pred             HhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc---
Q 021783          212 HYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---  288 (307)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~---  288 (307)
                      .  .+ ..+.++|+++++..+..++.+.+++.||.+.+|..|..                   .+..++++|||++.   
T Consensus       339 ~--~p-~gg~f~~~~~~~~~d~~~~~~~l~~~gV~v~PG~~F~~-------------------~~~~~~~iRls~~~~~~  396 (420)
T d1vp4a_         339 V--KS-EGGLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKV-------------------YDEPSPSMRLSFCLPPD  396 (420)
T ss_dssp             C--CC-SBSSEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCT-------------------TCCCCSEEEEECSSSCH
T ss_pred             e--cC-CceEEEEEECCCCCCHHHHHHHHHHCCeEEEechhhCC-------------------CCCCCCEEEEEeCcCCH
Confidence            1  11 13567777875443355667777888999999887542                   12246789999975   


Q ss_pred             CChHHHHHHHHHHHhc
Q 021783          289 EDVNDLISDLDKALRT  304 (307)
Q Consensus       289 ~~~~~~i~~l~~~l~~  304 (307)
                      +++++.+++|.+++++
T Consensus       397 e~l~~a~~rL~~~l~~  412 (420)
T d1vp4a_         397 EKIVEGIKRLREVVLE  412 (420)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3466667888888764

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1e-24  Score=186.39  Aligned_cols=246  Identities=18%  Similarity=0.201  Sum_probs=159.7

Q ss_pred             HH-HHHHHhcCCCC-eEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccc
Q 021783            3 AL-AAVTHLLGTGE-EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         3 al-~~~~~~~~~gd-~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~   75 (307)
                      ++ .++.++++||| +|++++|.|+.+.    ..++..|++++.++.+     |+++++..+ ++++++++++|+||||.
T Consensus        85 ai~~~~~~~~~pgd~~Vl~~~P~y~~~~----~~~~~~g~~v~~~~~~~~~~~d~~~l~~~~-~~~~~v~~~~pnNPtG~  159 (354)
T d1fg7a_          85 GIELLIRAFCEPGKDAILYCPPTYGMYS----VSAETIGVECRTVPTLDNWQLDLQGISDKL-DGVKVVYVCSPNNPTGQ  159 (354)
T ss_dssp             HHHHHHHHHCCTTTCEEEECSSSCTHHH----HHHHHHTCEEEECCCCTTSCCCHHHHHTSC-TTEEEEEEESSCTTTCC
T ss_pred             HHHHHHHHhhccccccccccccccccch----hhhhccCceeeccccccccccchhhhhhcc-cccceeeccCCCcccee
Confidence            45 45556889998 5889999998887    6677789999988863     788888776 47999999999999999


Q ss_pred             cccHHHHHHHH--HHcCCEEEEeCccCCCCc----C-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH
Q 021783           76 ICDIRKIAEMA--HAHGALLLVDNSIMSPVL----S-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  148 (307)
Q Consensus        76 ~~~~~~l~~~~--~~~~~~li~D~a~~~~~~----~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~  148 (307)
                      +++.+++..++  .+++.++++|++|.....    . .....+..+++.||||.+ |.+|+|+||++++++.+ +.+...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~~~~~~~~~~~~iv~~S~SK~~-~laGlRiGy~i~~~~~i-~~l~~~  237 (354)
T d1fg7a_         160 LINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAF-ALAGLRCGFTLANEEVI-NLLMKV  237 (354)
T ss_dssp             CCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTT-CCGGGCCEEEEECHHHH-HHHHHH
T ss_pred             EeeecccccccccccccccccccccchhhccccccchhhcccccceEEeCCcccc-CCCccccccccccchhh-hhhhhh
Confidence            99744433332  335778888888753211    1 233446788999999999 77899999999875544 444333


Q ss_pred             HHhcCCCCChhhHHHHhhcc-----ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceE
Q 021783          149 QNAEGSGLAPFDCWICLRGV-----KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  223 (307)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  223 (307)
                      ..  ....+...+..+...+     .....+.+++.+..+.+.+.+...+.+..+ .                ++.++++
T Consensus       238 ~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~-~----------------p~~~~f~  298 (354)
T d1fg7a_         238 IA--PYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQV-F----------------DSETNYI  298 (354)
T ss_dssp             SC--SSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEE-C----------------CCSSSEE
T ss_pred             cC--ccchhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHhCCCccee-C----------------CCCceEE
Confidence            22  1222222222222221     122333444555566666666665433111 1                1246788


Q ss_pred             EEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHH
Q 021783          224 SFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLD  299 (307)
Q Consensus       224 ~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~  299 (307)
                      ++++++   ..++.+.|.++||.++.+..+.                      ..++|+|||++. ++++++++.|+
T Consensus       299 ~~~~~~---~~~~~~~L~~~gIlvr~~~~~~----------------------~~~~~lRisigt~ee~~~~l~aLk  350 (354)
T d1fg7a_         299 LARFKA---SSAVFKSLWDQGIILRDQNKQP----------------------SLSGCLRITVGTREESQRVIDALR  350 (354)
T ss_dssp             EEEETT---HHHHHHHHHHTTEECEECTTST----------------------TCTTEEEEECCCHHHHHHHHHHHH
T ss_pred             EEeCCC---HHHHHHHHHHCCcEEecCCCCC----------------------CCCCEEEEEeCCHHHHHHHHHHHh
Confidence            888874   4567788888999998765421                      126789999985 34444554443

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=1.9e-25  Score=189.32  Aligned_cols=238  Identities=11%  Similarity=0.111  Sum_probs=161.9

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHH
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE   84 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~   84 (307)
                      .++..++++||+|++++|+|+.+.    ..++..|++++.+|.++-....+...++++++++++|+||||.+++.++|.+
T Consensus        87 ~~l~~l~~~~d~v~i~~P~y~~~~----~~~~~~g~~~v~v~~~~~~~~~~~~~~~~~~l~l~nP~NPtG~~~s~~~l~~  162 (334)
T d2f8ja1          87 EIIYVMMLMFDRSVFFPPTYSCYR----IFAKAVGAKFLEVPLTKDLRIPEVNVGEGDVVFIPNPNNPTGHVFEREEIER  162 (334)
T ss_dssp             HHHHHHHHHSSEEEECSSCCHHHH----HHHHHHTCCEEECCCCTTSCCCCCCCCTTEEEEEESSCTTTCCCCCHHHHHH
T ss_pred             hHHHHHhhhccccccccccccccc----cchhccCCccccccccccccccccccccceEEEecccccccceeecHHHhhc
Confidence            355556778999999999998887    6677789999999986322223334478999999999999999999888877


Q ss_pred             HHHHcCCEEEEeCccCCCCc----CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhh
Q 021783           85 MAHAHGALLLVDNSIMSPVL----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  160 (307)
Q Consensus        85 ~~~~~~~~li~D~a~~~~~~----~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (307)
                      + .++++++|+|++|.....    ......+..+++.|+||++ +.+|+|+||++++++ +.+.+.......  ..+...
T Consensus       163 ~-~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~~~~~~~-~i~~l~~~~~~~--~~s~~~  237 (334)
T d2f8ja1         163 I-LKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAF-SLAAQRVGYVVASEK-FIDAYNRVRLPF--NVSYVS  237 (334)
T ss_dssp             H-HTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTS-SCTTTCEEEEEECHH-HHHHHHHHSCTT--CSCHHH
T ss_pred             c-ccceeEEeecccchhhcccccccccccCceEEEEecCcccc-chhhhhhhhcccchH-HHHHHHHhhccc--ccchhh
Confidence            5 567999999999853221    2333446789999999999 678999999999755 444444443222  233333


Q ss_pred             HHHHhhc---cccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHH
Q 021783          161 CWICLRG---VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVV  237 (307)
Q Consensus       161 ~~~~~~~---l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (307)
                      +..+...   .+.+....+.+.++.+.+.+.|++.. + .+       .          ...++++++.++.. +.+.+.
T Consensus       238 ~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~-~~-------~----------~~~g~f~~~~~~~~-~~~~~~  297 (334)
T d2f8ja1         238 QMFAKVALDHREIFEERTKFIVEERERMKSALREMG-Y-RI-------T----------DSRGNFVFVFMEKE-EKERLL  297 (334)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHT-C-EE-------C----------CCCSSEEEEECCHH-HHHHHH
T ss_pred             hhhcccccccccchhhHHHHHHHHHHHHHHHHHHCC-C-eE-------C----------CCCceEEEEECCCC-CHHHHH
Confidence            3333222   33445556666777777777777542 1 11       1          11356677777654 588899


Q ss_pred             hcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc-CChHHHHHHHH
Q 021783          238 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI-EDVNDLISDLD  299 (307)
Q Consensus       238 ~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~~~~~i~~l~  299 (307)
                      +.|..+||.++.      .                      ++++|||++. ++++++++.|+
T Consensus       298 ~~L~~~GI~vr~------~----------------------~~~vRis~g~~ee~~~l~~~l~  332 (334)
T d2f8ja1         298 EHLRTKNVAVRS------F----------------------REGVRITIGKREENDMILRELE  332 (334)
T ss_dssp             HHHHHTTEECEE------E----------------------TTEEEEECCCHHHHHHHHHHHH
T ss_pred             HHHHHCCCEECC------C----------------------CCeEEEEcCCHHHHHHHHHHHh
Confidence            999889997742      0                      4579999985 34444554444

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=1.9e-25  Score=191.59  Aligned_cols=132  Identities=20%  Similarity=0.250  Sum_probs=114.8

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcC-----CCceEEEEeCCCCC
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG-----PWTKLVWVESPTNP   72 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~-----~~~~~v~~~~~~n~   72 (307)
                      +++.++++|||+|+++.++|.+..    ..++..|++++.+|.+       |++++++.++     .++++|++++++||
T Consensus        77 ~~~~al~~~gd~Vi~~~~~h~s~~----~~~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~  152 (364)
T d2e7ja1          77 AVMHSLAKKDAWVVMDENCHYSSY----VAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGN  152 (364)
T ss_dssp             HHHHHHCCTTCEEEEETTCCHHHH----HHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTT
T ss_pred             HHHHHHhCCCcEEEeecccccccc----hHHHhccceEEEeeeccccccccCHHHHHhhhhhhcccCCceEEEeecCCCC
Confidence            677788999999999999998887    4466789999999874       6888988885     34678999999999


Q ss_pred             ccccccHHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHH
Q 021783           73 RQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  142 (307)
Q Consensus        73 tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~  142 (307)
                      ||.+.|+++|.++|++||+++++|++|+.+..+ +..++++|++++|+||+++++.+  +|+++.+++...
T Consensus       153 tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K~~~~~g~--~g~l~~~~~~~~  221 (364)
T d2e7ja1         153 YGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGP--IGVMGMKEEWAE  221 (364)
T ss_dssp             TCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSS--CEEEEECTTTTT
T ss_pred             CceeecchhheeccccccchhhccccchhhhhhhcccccccceeeeccccccCCCCC--EEEEEECHHHHH
Confidence            999999999999999999999999999998876 67778999999999999976655  899999876443

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-23  Score=183.22  Aligned_cols=260  Identities=15%  Similarity=0.090  Sum_probs=171.6

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----------------ChHHHHhhcCCCceEE
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----------------DLDEVASAIGPWTKLV   64 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----------------d~~~l~~~l~~~~~~v   64 (307)
                      |+ .++.+++++||+|++++|.|+.+.    ..+...|++++.++..                 |.+++.....++++++
T Consensus       100 al~~~~~~l~~~g~~vlv~~p~~~~y~----~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~i  175 (418)
T d1w7la_         100 ALFTAFQALVDEGDEVIIIEPFFDCYE----PMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKAL  175 (418)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCTTEEEE
T ss_pred             HHHHHHHhhccCCceeeccccccchhH----HHHHHcCCEeeccccccccccccccccccCcccchhhhhccccccccce
Confidence            45 455668999999999999999888    6677888888877642                 4667777777899999


Q ss_pred             EEeCCCCCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCc--------CCc-cCCCccEEEeccccccccCCCceeE
Q 021783           65 WVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL--------SRP-LELGADIVMHSATKFIAGHSDVMAG  132 (307)
Q Consensus        65 ~~~~~~n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~--------~~~-~~~~~d~~~~s~~K~~~g~~g~~~G  132 (307)
                      ++++|+||||.+++   +++|+++|+++++++|+|++|..-.+        ... ...+..+++.|+||.+ +.+|+|+|
T Consensus       176 ~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~pG~RvG  254 (418)
T d1w7la_         176 VLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTF-SATGWKVG  254 (418)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHT-TCGGGCCE
T ss_pred             eccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccc-cCCCCccc
Confidence            99999999999985   88999999999999999999964221        111 1225789999999999 56799999


Q ss_pred             EEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhcc-----------ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecC
Q 021783          133 VLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV-----------KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  201 (307)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  201 (307)
                      |++++++ +.+.+...........+...+..+...+           +.+....+.+.++.+.+.+.|++.. + .+..+
T Consensus       255 ~~v~~~~-~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~-~~~~P  331 (418)
T d1w7la_         255 WVLGPDH-IMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVG-L-KPLIP  331 (418)
T ss_dssp             EEECCHH-HHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTT-C-EEEEC
T ss_pred             ccccchh-hhhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhcC-C-cccCC
Confidence            9999854 5555555555544444444333332222           1223334445555566666666532 1 11111


Q ss_pred             CCCCCCchHHHhhhccCCCceEEEEeCC-------------HHHHHHHHhc-CCcceeecCCCCccceeecccccCCCCC
Q 021783          202 GLPEHPGHELHYSQAKGAGSVLSFLTGS-------------LALSKHVVET-TKYFSITVSFGSVKSLISMPCFMSHASI  267 (307)
Q Consensus       202 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~-l~~~gi~v~~g~~~~~~~~p~~~~~~~~  267 (307)
                                      ..+.++++++++             ......+.+. |++.||.+.+|+.|....          
T Consensus       332 ----------------~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~----------  385 (418)
T d1w7la_         332 ----------------QGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVP----------  385 (418)
T ss_dssp             ----------------SBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHH----------
T ss_pred             ----------------CceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCC----------
Confidence                            135566666531             1113344444 566799999988754210          


Q ss_pred             cHHHHHhcCCCCCeEEEEecc--CChHHHHHHHHHHH
Q 021783          268 PVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKAL  302 (307)
Q Consensus       268 ~~~~~~~~~~~~~~iRis~~~--~~~~~~i~~l~~~l  302 (307)
                            ..+..++++|||++.  +++++.+++|++..
T Consensus       386 ------~~~~~~~~iRis~~~~~~~l~~a~~rl~~~~  416 (418)
T d1w7la_         386 ------HQKHFDHYIRFCFVKDEATLQAMDEKLRKWK  416 (418)
T ss_dssp             ------HHTTSCSEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred             ------ccCCCCCEEEEEEcCCHHHHHHHHHHHHHHh
Confidence                  012246899999975  34566666665543

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.92  E-value=6.6e-25  Score=188.10  Aligned_cols=172  Identities=22%  Similarity=0.252  Sum_probs=129.0

Q ss_pred             cHH-HHHHHhcCCCCeEEE-c-CCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCcc-ccc
Q 021783            2 AAL-AAVTHLLGTGEEIVA-G-DDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQ-QIC   77 (307)
Q Consensus         2 aal-~~~~~~~~~gd~Vlv-~-~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG-~~~   77 (307)
                      +|+ ++++++ .+||.|++ + .|+|+++.    ..++..|+++  ++.+|+++++++++++|++|++++|+||++ ...
T Consensus        79 ~a~~~~l~al-~~~~~vi~~~~~~~~~~~~----~~~~l~g~~~--v~~~d~e~l~~~i~~~tk~i~~~~p~n~~~~~~~  151 (366)
T d2aeua1          79 SAILATILAL-KPKKVIHYLPELPGHPSIE----RSCKIVNAKY--FESDKVGEILNKIDKDTLVIITGSTMDLKVIELE  151 (366)
T ss_dssp             HHHHHHHHHH-CCSEEEEECSSSSCCTHHH----HHHHHTTCEE--EEESCHHHHHTTCCTTEEEEEECBCTTSCBCCHH
T ss_pred             HHHHHHHHHh-CCCCEEEEecCCCcchhHH----HHHHhcCCeE--ECCCCHHHHHHhcCCCceEEEEEecCCCCcCCHH
Confidence            345 455554 55666554 4 57898887    5567788875  466799999999999999999999988644 567


Q ss_pred             cHHHHHHHHHHcCCEEEEeCccCCCCc-----CCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhc
Q 021783           78 DIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE  152 (307)
Q Consensus        78 ~~~~l~~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~  152 (307)
                      ++++|+++|++||+++++|++|+.+.+     +....+|+|++++|+||+++|+   ++|+++++++ +.+.+.......
T Consensus       152 ~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~~g~---~~G~i~~~~~-~i~~~~~~~~~~  227 (366)
T d2aeua1         152 NFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGP---RGGLLAGKKE-LVDKIYIEGTKF  227 (366)
T ss_dssp             HHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSC---SCEEEEEEHH-HHHHHHHHHHTT
T ss_pred             HHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEEEeccccccccc---ceeEEEecHH-HHHHHHHHHhcc
Confidence            899999999999999999999985433     2334568999999999998655   3899999865 555566666667


Q ss_pred             CCCCChhhHHHHhhccccH-HHHHHHHHHHHHH
Q 021783          153 GSGLAPFDCWICLRGVKTM-ALRVEKQQDNAQK  184 (307)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~  184 (307)
                      +...++..++.+..+++.+ ..++++..++++.
T Consensus       228 g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~  260 (366)
T d2aeua1         228 GLEAQPPLLAGIYRALKNFNLERIRKAFERAKN  260 (366)
T ss_dssp             TCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            7777888888887777543 2345555555554

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=7.3e-24  Score=182.83  Aligned_cols=243  Identities=16%  Similarity=0.136  Sum_probs=161.3

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCccc
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG~   75 (307)
                      |+ .++.+++++||.|++++|.|+.+.    ......|+.++.++.+      |++++++.+.++++++++++|+||||.
T Consensus        99 al~~~~~~l~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~  174 (382)
T d1u08a_          99 ALYAAITALVRNGDEVICFDPSYDSYA----PAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSAT  174 (382)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCTTHH----HHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCC
T ss_pred             HHHHHHhhcccccceEEEecccccchh----hhhhhccccceecccccccccCCHHHHhhhhccCccEEEECCCCccccc
Confidence            45 456678999999999999999888    5566678777777653      789999999999999999999999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCccCCCCcC-----C----ccCCCccEEEeccccccccCCCceeEEEEEcChhHHH
Q 021783           76 ICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----R----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        76 ~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~-----~----~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~  143 (307)
                      +++   +++|.++|.+++++++.|+.|......     .    ....+..+++.|+||.+ +.+|+|+||++++++ +.+
T Consensus       175 v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~pG~RiG~~v~~~~-~~~  252 (382)
T d1u08a_         175 VWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTY-HMTGWKVGYCVAPAP-ISA  252 (382)
T ss_dssp             CCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHT-TCGGGCCEEEECCHH-HHH
T ss_pred             ccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccc-cCCcccchhhhccch-hHH
Confidence            996   678888899999999999998632221     1    11224679999999999 678999999998755 444


Q ss_pred             HHHHHHHhcCCCCChhhHHHHhhccc----cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCC
Q 021783          144 ELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  219 (307)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (307)
                      .+...........+...+..+...++    .+....+.+.++.+.+.+.++..               ++...  . ...
T Consensus       253 ~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------g~~~~--~-p~g  314 (382)
T d1u08a_         253 EIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNES---------------RLEIL--P-CEG  314 (382)
T ss_dssp             HHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSS---------------SCEEC--C-CCB
T ss_pred             HHHhhhcccccccccccccccccccccchHHHHHHHHHHHhhhhhhhhhhccC---------------CcEEe--c-CCc
Confidence            44444444444444444444433332    22222233333333444333221               11110  1 123


Q ss_pred             CceEEEEeCC--HHHHHHHHhcC-CcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc
Q 021783          220 GSVLSFLTGS--LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  288 (307)
Q Consensus       220 ~~~~~~~~~~--~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~  288 (307)
                      +.++|++++.  ..+..++.++| +++||.+.+|..|..                   .+.+++++|||++.
T Consensus       315 g~~~~~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~-------------------~~~~~~~~Ris~~~  367 (382)
T d1u08a_         315 TYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCA-------------------DPFPHKLIRLCFAK  367 (382)
T ss_dssp             SSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCS-------------------SCCCSCEEEEECCS
T ss_pred             eEEEEEecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCC-------------------CCCCCCEEEEEEeC
Confidence            5667777753  12355555554 567999999887542                   12246789999975

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=2.1e-23  Score=179.57  Aligned_cols=267  Identities=16%  Similarity=0.120  Sum_probs=168.6

Q ss_pred             hcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHH
Q 021783           10 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE   84 (307)
Q Consensus        10 ~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~   84 (307)
                      ..++|+.|+++...|++....+ ..++..|++++.+|.+     |+++++++++++|++|++++++|+||...|++++.+
T Consensus        85 ~~~~g~~v~~~~~~~~~~~~~~-~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~i~~  163 (376)
T d1eg5a_          85 FEKRKRTIITTPIEHKAVLETM-KYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTR  163 (376)
T ss_dssp             TTTTCCEEEECTTSCHHHHHHH-HHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHH
T ss_pred             ccccCcccccccccchhhHHHH-HHHHhcCCEEEEEcCCCCCeECHHHHHHhcCCCceEEEEECCccccceeeeehhhhh
Confidence            4678888888888886666555 4567789999999864     789999999999999999999999999999999999


Q ss_pred             HHHHc--CCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH---HHhcCCCCCh
Q 021783           85 MAHAH--GALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL---QNAEGSGLAP  158 (307)
Q Consensus        85 ~~~~~--~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~---~~~~~~~~~~  158 (307)
                      +++.+  ++.+++|++|+.|..+ +..++++|++++|+|||+ ||+|  .|+++.+++...+.....   ..........
T Consensus       164 ~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~-gp~G--~~~l~~~~~~~~~p~~~g~~~~~~~~~~~~~  240 (376)
T d1eg5a_         164 IVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFH-GPKG--VGITYIRKGVPIRPLIHGGGQERGLRSGTQN  240 (376)
T ss_dssp             HHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGT-SCTT--CEEEEECTTSCCCCSBCSSCTTTTTBCSCCC
T ss_pred             hhhhcccCceeEEEeeeccccccccccccCccceecccceee-cCCC--ceeEEeccCcccCCcccCCCCcccccCCccc
Confidence            98666  8999999999999987 788889999999999997 7888  788888755321110000   0000001111


Q ss_pred             hhHHHH-hhcc----ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHH
Q 021783          159 FDCWIC-LRGV----KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALS  233 (307)
Q Consensus       159 ~~~~~~-~~~l----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (307)
                      ...... ....    ...............++.+.+.....   ......            ......++.+.+.+.+ .
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~------------~~~~~~~~~~~~~~~~-~  304 (376)
T d1eg5a_         241 VPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGA---HIITPL------------EISLPNTLSVSFPNIR-G  304 (376)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTC---EECSCT------------TSBCTTEEEEECTTCC-H
T ss_pred             chhhhhHHHHhhccccchhhhhhhhhhhhhhhccccccccc---cccccc------------cccccceeeeccCCCC-H
Confidence            111111 1111    11111222223334445555544331   111110            0113456777777665 6


Q ss_pred             HHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCC----CCeEEEEeccCChHHHHHHHHHHHhc
Q 021783          234 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRISVGIEDVNDLISDLDKALRT  304 (307)
Q Consensus       234 ~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~iRis~~~~~~~~~i~~l~~~l~~  304 (307)
                      ..+...|..+||.++.|.++.   .+     ....+..+.+.|..    +++||+|++..++++.++.|.++|++
T Consensus       305 ~~~~~~L~~~gI~vr~G~~c~---~~-----~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~  371 (376)
T d1eg5a_         305 STLQNLLSGYGIYVSTSSACT---SK-----DERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEE  371 (376)
T ss_dssp             HHHHHHHHHTTEECBC--------------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCeEEeCcchhc---CC-----ccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence            777777888999999988632   11     11223344555654    36899999975555555555555543

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.90  E-value=3.1e-22  Score=171.20  Aligned_cols=255  Identities=16%  Similarity=0.116  Sum_probs=178.3

Q ss_pred             cHHHHHHHh--cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcC----CCceEEEEeCCCCCccc
Q 021783            2 AALAAVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         2 aal~~~~~~--~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~----~~~~~v~~~~~~n~tG~   75 (307)
                      |+++++.++  .+++|.|+.+...|.+..    ..++..+++++.++++|.+++++.+.    .+.++|++++..+++|.
T Consensus       117 An~~~i~~l~~~~~~d~i~~D~~~Hasi~----~g~~ls~a~~~~f~Hnd~~~l~~l~~~~~~~~~~~iv~egvySmdGd  192 (396)
T d2bwna1         117 ANDATLSTLRVLFPGLIIYSDSLNHASMI----EGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGD  192 (396)
T ss_dssp             HHHHHHHHHHHHSTTCEEEEETTCCHHHH----HHHHHSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCC
T ss_pred             HHHHHHHHHhcccCCCceeehhhhhhccc----hhhhccccCceEeecchHHHhhhHHhhhcccCceeEEEEeeccCccc
Confidence            344555554  578999999999997777    66778899999999999998877764    45678888899999999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCccCCCCcC-Ccc--------CCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH
Q 021783           76 ICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPL--------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  146 (307)
Q Consensus        76 ~~~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~--------~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~  146 (307)
                      +.|+++|.+++++||+++++|++|+.|.+. ...        ....|++++|++|.+++.    +|++.++++ ..+.+.
T Consensus       193 ~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~----Gg~v~~~~~-~i~~l~  267 (396)
T d2bwna1         193 FGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVF----GGYIAASAR-MVDAVR  267 (396)
T ss_dssp             BCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSC----CEEEEECHH-HHHHHH
T ss_pred             ccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeeccccccccc----ccccchhHH-HHHHHH
Confidence            999999999999999999999999988764 211        224799999999999543    789888755 545454


Q ss_pred             HHHHh--cCCCCChhhHHHHhhccccH-----HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCC
Q 021783          147 FLQNA--EGSGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  219 (307)
Q Consensus       147 ~~~~~--~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (307)
                      ...+.  ....+++........+++-+     +.+.+.+..+.+.+.+.+....      ++..             ...
T Consensus       268 ~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~g------~~~~-------------~~~  328 (396)
T d2bwna1         268 SYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALG------MPII-------------DHG  328 (396)
T ss_dssp             HHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHT------CCBC-------------CCS
T ss_pred             hhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhcC------CCcC-------------CCC
Confidence            43322  22344444444444443321     2223444556666666665431      1110             124


Q ss_pred             CceEEEEeCCHHHHHHHHhc-CCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHH
Q 021783          220 GSVLSFLTGSLALSKHVVET-TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL  298 (307)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~-l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l  298 (307)
                      ++++.+.+++.+.+..+.+. |+++||.+..      ..+|.+..              +...+||+++..++++.|+.|
T Consensus       329 spIvpv~ig~~~~~~~~a~~lL~e~Gi~v~~------i~~PtVp~--------------g~~rlRi~lsa~ht~edId~l  388 (396)
T d2bwna1         329 SHIVPVVIGDPVHTKAVSDMLLSDYGVYVQP------INFPTVPR--------------GTERLRFTPSPVHDLKQIDGL  388 (396)
T ss_dssp             SSCEEEECCCHHHHHHHHHHHHHHHCEECCE------ECTTTSCT--------------TCCEEEECCCTTSCHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHhCCEEEEE------ECCCcCCC--------------CCeeEEEEeCccCCHHHHHHH
Confidence            67888889887777888777 4567998765      33343221              245699999998888888888


Q ss_pred             HHHHhc
Q 021783          299 DKALRT  304 (307)
Q Consensus       299 ~~~l~~  304 (307)
                      .++|++
T Consensus       389 ~~~L~~  394 (396)
T d2bwna1         389 VHAMDL  394 (396)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888875

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=2.1e-22  Score=172.93  Aligned_cols=256  Identities=13%  Similarity=0.143  Sum_probs=184.0

Q ss_pred             cHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcC---CCceEEEEeCCCCCcccccc
Q 021783            2 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         2 aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~   78 (307)
                      |+.+++.++.+++|.|++....|.+..    ...+..+++++.++++|++++++.+.   ++.++|+++++.+++|.+.|
T Consensus       110 an~~~i~al~~~~d~v~~d~~~h~si~----~g~~~~~~~~~~~~hnd~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~p  185 (383)
T d1bs0a_         110 ANQAVIAAMMAKEDRIAADRLSHASLL----EAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP  185 (383)
T ss_dssp             HHHHHHHHHCCTTCEEEEETTCCHHHH----HHHHTSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC
T ss_pred             hhHHHHHhhcCCCceEEeeccccHHHh----hccccCCCcceEecchHHHHHHHHhcccCCCceEEEecCCCCCCCcccc
Confidence            455777889999999999999998877    55677899999999999999988875   56778889999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcC-Ccc------CCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH-HH
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLS-RPL------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-QN  150 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~------~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~-~~  150 (307)
                      +++|.++|++||+++++|++|+.|.+. ...      ....++++.+++|.+++ .   +|++.++.+ ..+.+... ..
T Consensus       186 l~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~-~---Gg~v~~~~~-~~~~l~~~~~~  260 (383)
T d1bs0a_         186 LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGV-S---GAAVLCSST-VADYLLQFARH  260 (383)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSS-C---CEEEEECHH-HHHHHHHHCHH
T ss_pred             hhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCccccccccccccccc-c---ccccccchh-HHHHHHhhchh
Confidence            999999999999999999999988764 211      12467899999999954 3   688888755 44445433 22


Q ss_pred             hcC-CCCChhhHHHHhhccccH-----HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEE
Q 021783          151 AEG-SGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  224 (307)
Q Consensus       151 ~~~-~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  224 (307)
                      ... ...++.....+..+++.+     ..+.++..++...+.+.+++...    ...               ++.++++.
T Consensus       261 ~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~----~~~---------------~~~s~Ii~  321 (383)
T d1bs0a_         261 LIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPF----TLA---------------DSCSAIQP  321 (383)
T ss_dssp             HHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSC----EEC---------------SCCSSBCC
T ss_pred             hhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCC----ccC---------------CCCCCEEE
Confidence            222 334444444444443322     23444555666666666654421    000               12356777


Q ss_pred             EEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHHHhc
Q 021783          225 FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  304 (307)
Q Consensus       225 ~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~l~~  304 (307)
                      +.+.+.+.+..+.+.|.++||.++..      .+|.+.              .++..+|++++..++++.|+.+.++|+.
T Consensus       322 v~~g~~~~a~~~~~~L~~~Gi~v~~~------~~PtVp--------------~g~~~lRi~~~a~ht~edid~l~~~L~~  381 (383)
T d1bs0a_         322 LIVGDNSRALQLAEKLRQQGCWVTAI------RPPTVP--------------AGTARLRLTLTAAHEMQDIDRLLEVLHG  381 (383)
T ss_dssp             EEEESHHHHHHHHHHHHHTTEECCEE------CTTSSC--------------TTCEEECCBCCTTCCHHHHHHHHHHHHH
T ss_pred             EEECCHHHHHHHHHHHHHCCceEEEE------cCCCCC--------------CCCceEEEEeCCCCCHHHHHHHHHHHHh
Confidence            77777777889999999999988752      233222              1245699999999999999999988876


Q ss_pred             C
Q 021783          305 G  305 (307)
Q Consensus       305 ~  305 (307)
                      .
T Consensus       382 ~  382 (383)
T d1bs0a_         382 N  382 (383)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=6.1e-22  Score=170.97  Aligned_cols=259  Identities=14%  Similarity=0.142  Sum_probs=182.0

Q ss_pred             cHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcC------CCceEEEEeCCCCCccc
Q 021783            2 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG------PWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         2 aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~------~~~~~v~~~~~~n~tG~   75 (307)
                      |+.+++.++.+++|.|++....|.+..    ..+...++++..++.+|.+++++.+.      .++.+|+++++.++.|.
T Consensus       117 An~~~i~~l~~~~d~i~~d~~~h~s~~----~G~~~~~a~~~~~~~~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~  192 (401)
T d1fc4a_         117 ANGGLFETLLGAEDAIISDALNHASII----DGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGV  192 (401)
T ss_dssp             HHHTTHHHHCCTTCEEEEETTCCHHHH----HHHHTSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTE
T ss_pred             hhHHHHHHhcCCCcEEEeCCcchHHHH----ccccccCceEEEEcCCChHHHHHHHHHhhhcccCceEEEEcCCCCCCCc
Confidence            445677788999999999999998887    55677888999999998888877664      35578888899999999


Q ss_pred             cccHHHHHHHHHHcCCEEEEeCccCCCCcCC---------ccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH
Q 021783           76 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  146 (307)
Q Consensus        76 ~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~---------~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~  146 (307)
                      +.|++++.++|++||+++++|++|+.|.+..         ......|++++|++|.++|+.   +|++.++++ +.+.+.
T Consensus       193 ~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~---Gg~v~g~~~-~~~~l~  268 (401)
T d1fc4a_         193 IANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGAS---GGYTAARKE-VVEWLR  268 (401)
T ss_dssp             ECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSS---CEEEEECHH-HHHHHH
T ss_pred             hhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCC---cccccCCHH-HHHHHH
Confidence            9999999999999999999999998766531         111247999999999996554   688888755 444444


Q ss_pred             HH-HH-hcCCCCChhhHHHHhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCc
Q 021783          147 FL-QN-AEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS  221 (307)
Q Consensus       147 ~~-~~-~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (307)
                      .. .. ..+..+++.....+...++.   .+.+.+++.++...+.+.+.....         ...          ...++
T Consensus       269 ~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~g~---------~~~----------~~~~p  329 (401)
T d1fc4a_         269 QRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGF---------TLA----------GADHA  329 (401)
T ss_dssp             HHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTC---------CBC----------CSSSS
T ss_pred             cCChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhcccCC---------ccC----------CCCCC
Confidence            32 22 23344555444444444432   234456667777777777665421         000          12357


Q ss_pred             eEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHH
Q 021783          222 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISD  297 (307)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~  297 (307)
                      ++.+.+.+...+..+.+.|.++||.++.      ..+|.+..              +...+|++++.    +|+|++++.
T Consensus       330 Iv~v~~~~~~~a~~~~~~L~~~Gi~v~~------i~~PtVp~--------------g~~~lRi~~~a~hT~edId~~v~a  389 (401)
T d1fc4a_         330 IIPVMLGDAVVAQKFARELQKEGIYVTG------FFYPVVPK--------------GQARIRTQMSAAHTPEQITRAVEA  389 (401)
T ss_dssp             EEEEEEECHHHHHHHHHHHHHTTEECCE------ECTTSSCT--------------TCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCceEEe------ECCCCCCC--------------CCceEEEEECCCCCHHHHHHHHHH
Confidence            8888888777788899999999998764      23332221              24459999976    666677777


Q ss_pred             HHHHHhcCCC
Q 021783          298 LDKALRTGPL  307 (307)
Q Consensus       298 l~~~l~~~~~  307 (307)
                      |+++.+++++
T Consensus       390 l~ev~~~lg~  399 (401)
T d1fc4a_         390 FTRIGKQLGV  399 (401)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHhCC
Confidence            7777666653

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.89  E-value=1.1e-21  Score=170.05  Aligned_cols=133  Identities=11%  Similarity=0.098  Sum_probs=108.4

Q ss_pred             HHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcC---CCceEEEEeCCCCCccc
Q 021783            6 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG---PWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         6 ~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~---~~~~~v~~~~~~n~tG~   75 (307)
                      ++.++++|||+|++++|.|+.+.    ..++..|++++.+|..       +++.+.+.+.   ++++++++++|+||||.
T Consensus       115 ~~~~l~~pGd~Vlv~~P~y~~y~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~  190 (401)
T d7aata_         115 FLQRFFKFSRDVYLPKPSWGNHT----PIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGV  190 (401)
T ss_dssp             HHHHHCTTCCEEEEEESCCTTHH----HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCC
T ss_pred             hhHhhcCCCceEEEecCCCcchh----hHHHHcCCeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCCCCCccc
Confidence            34567999999999999999998    6778899999999872       6677766664   68899999999999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCccCCCCcCC-----------ccCCCccEEEeccccccccCCCceeEEEEEcChhH
Q 021783           76 ICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        76 ~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~-----------~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~  141 (307)
                      +++   +++|+++|++|++++|+|++|..-.+..           .......+++.|+||.+ +.+|.|+|+++++....
T Consensus       191 ~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~-~~~G~RiG~~~~~~~~~  269 (401)
T d7aata_         191 DPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNM-GLYGERAGAFTVICRDA  269 (401)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS-CCGGGCEEEEEEECSSH
T ss_pred             cCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccc-eeeccccceeecchHHH
Confidence            996   8899999999999999999997543321           11223468888999998 67899999999987654


Q ss_pred             HH
Q 021783          142 AK  143 (307)
Q Consensus       142 ~~  143 (307)
                      ..
T Consensus       270 ~~  271 (401)
T d7aata_         270 EE  271 (401)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.7e-23  Score=178.81  Aligned_cols=261  Identities=17%  Similarity=0.193  Sum_probs=169.8

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcC-CCceEEEEeCCCCCcccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG-PWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~   78 (307)
                      +++..++++||++++....+.+....  ..+...+..+..++.+     |.+++++.+. ++++++++++.+|.||.+.|
T Consensus        85 ~~i~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~p  162 (388)
T d1h0ca_          85 AALVNVLEPGDSFLVGANGIWGQRAV--DIGERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQP  162 (388)
T ss_dssp             HHHHHHCCSSCCEEECBSSHHHHHHH--HHHHHHC--CBCCBCCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred             HHHHHhhccCCceeeecccceeeeec--cccccccccccccccCCccccchHHHHHHhccCCcceEEEeeeeeccccccC
Confidence            56667899999999999888766544  3345555555555542     6677766654 68899999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHH-----------
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY-----------  146 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~-----------  146 (307)
                      +++|.++|+++|+++++|++|+.|..+ +...+++|++++|.+|+++||+|  +|+++.++..+.....           
T Consensus       163 i~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~gp~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (388)
T d1h0ca_         163 LDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPG--TSLISFSDKAKKKMYSRKTKPFSFYLD  240 (388)
T ss_dssp             CTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCTT--CEEEEECHHHHHHHTTCSSCCSCSTTC
T ss_pred             HHHHHHHhhcccccceeccccccccccccccccccceecccccccccCCCc--eEEEeecHHHHHhhhhccccccccccc
Confidence            999999999999999999999999987 88899999999999999999998  8898888654433211           


Q ss_pred             --HHHHh---------cCCCCChhhHHHHhhcccc-----HHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchH
Q 021783          147 --FLQNA---------EGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE  210 (307)
Q Consensus       147 --~~~~~---------~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~  210 (307)
                        .....         ...++..........+++.     +....++..+..+.+.+.++.....     . +       
T Consensus       241 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~-----~-~-------  307 (388)
T d1h0ca_         241 IKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQ-----L-F-------  307 (388)
T ss_dssp             HHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-----B-S-------
T ss_pred             cchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCcc-----c-c-------
Confidence              01100         0011111111111112211     1222333344444455555433210     0 0       


Q ss_pred             HHhhhccCCCceEEEEeCCHHHHHHHHhcCCc-ceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEE-ecc
Q 021783          211 LHYSQAKGAGSVLSFLTGSLALSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS-VGI  288 (307)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis-~~~  288 (307)
                       ...+......+++|.++...+..++...|.. +||.++.|....                       ..+.+||| ++.
T Consensus       308 -~~~~~~rs~~i~~~~~p~~~~~~~~~~~L~~~~gI~v~~G~~~~-----------------------~~~~iRis~~g~  363 (388)
T d1h0ca_         308 -VKDPALRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPS-----------------------TGKVLRIGLLGC  363 (388)
T ss_dssp             -SCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGG-----------------------TTTEEEEECCGG
T ss_pred             -cCCHHHcCCeEEEEECCCCCCHHHHHHHHHhcCCEEEeCCchhh-----------------------cCCEEEEeCCCC
Confidence             0011112346778888543346777777644 589888775311                       24569999 764


Q ss_pred             ----CChHHHHHHHHHHHhcCC
Q 021783          289 ----EDVNDLISDLDKALRTGP  306 (307)
Q Consensus       289 ----~~~~~~i~~l~~~l~~~~  306 (307)
                          +|+|++++.|+++|++++
T Consensus       364 ~~t~edid~li~aL~~~L~~l~  385 (388)
T d1h0ca_         364 NATRENVDRVTEALRAALQHCP  385 (388)
T ss_dssp             GCSHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHHHHHHHhc
Confidence                678888889998888764

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.86  E-value=1.8e-20  Score=162.98  Aligned_cols=128  Identities=15%  Similarity=0.074  Sum_probs=100.1

Q ss_pred             hcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC--------CChHHHHhh---cCCCceEEEEeCCCCCcccccc
Q 021783           10 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASA---IGPWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus        10 ~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~--------~d~~~l~~~---l~~~~~~v~~~~~~n~tG~~~~   78 (307)
                      +++|||+|++++|.|+.+.    ..++..|++++.++.        .|.+.+++.   ..++++++++++||||||.+++
T Consensus       126 ~~~pGd~Vlv~~P~y~~y~----~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s  201 (412)
T d1ajsa_         126 TNNKDTPVYVSSPTWENHN----GVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPT  201 (412)
T ss_dssp             SSCCCSCEEEEESCCTHHH----HHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCC
T ss_pred             cCCCCCEEEEeCCcchhhH----HHHHHcCCeEEEeecccccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCC
Confidence            4799999999999999888    566777877554432        155555554   3578899999999999999996


Q ss_pred             ---HHHHHHHHHHcCCEEEEeCccCCCCcCC-----------ccCCCccEEEeccccccccCCCceeEEEEEcChhHH
Q 021783           79 ---IRKIAEMAHAHGALLLVDNSIMSPVLSR-----------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  142 (307)
Q Consensus        79 ---~~~l~~~~~~~~~~li~D~a~~~~~~~~-----------~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~  142 (307)
                         +++|+++|++||+++|.|++|..-....           .......+++.|+||.+ +.+|.|.|++++......
T Consensus       202 ~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~-~~~G~R~G~~~~~~~~~~  278 (412)
T d1ajsa_         202 PEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNF-GLYNERVGNLTVVAKEPD  278 (412)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTS-CCGGGCEEEEEEECSSHH
T ss_pred             HHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccc-cCCCCCccccccchhHHH
Confidence               8999999999999999999997433221           11224678899999999 678999999999876443

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.86  E-value=4.8e-20  Score=160.13  Aligned_cols=128  Identities=13%  Similarity=0.068  Sum_probs=104.0

Q ss_pred             HHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcC---CCceEEEEeCCCCCccccc
Q 021783            8 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG---PWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         8 ~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~   77 (307)
                      ...+.|||+|++++|.|+.+.    ..++..|++++.++..       +.+.+.+.+.   ++++++++++||||||.++
T Consensus       118 ~~~~~~gd~Vlip~P~~~~y~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~  193 (412)
T d1yaaa_         118 FSKFFPDKLVYLSKPTWANHM----AIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDP  193 (412)
T ss_dssp             HHHHCTTCCEEEEESCCTTHH----HHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCC
T ss_pred             HhccCCCCEEecccccCchhH----HHHHHcCCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCccccC
Confidence            345789999999999999888    6678889999999862       5566655553   6778899999999999999


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCccCCCCcCC--------------ccCCCccEEEeccccccccCCCceeEEEEEcChh
Q 021783           78 D---IRKIAEMAHAHGALLLVDNSIMSPVLSR--------------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  140 (307)
Q Consensus        78 ~---~~~l~~~~~~~~~~li~D~a~~~~~~~~--------------~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~  140 (307)
                      +   +++|+++|+++++++|+|++|..-....              ....+..+++.|+||.+ +.+|.|+||++++.+.
T Consensus       194 s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RiG~~~~~~~~  272 (412)
T d1yaaa_         194 TSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNA-GMYGERVGCFHLALTK  272 (412)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTS-CCGGGCEEEEEEECCS
T ss_pred             CHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCcc-ccCcCceEEEEEchhh
Confidence            6   8899999999999999999997443321              12234679999999999 7789999999998653

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=7.3e-20  Score=157.57  Aligned_cols=261  Identities=11%  Similarity=0.095  Sum_probs=169.2

Q ss_pred             HH-HHHHHhc---CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC------CChHHHHhhcC-CCceEEEEeCCCC
Q 021783            3 AL-AAVTHLL---GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT------CDLDEVASAIG-PWTKLVWVESPTN   71 (307)
Q Consensus         3 al-~~~~~~~---~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~------~d~~~l~~~l~-~~~~~v~~~~~~n   71 (307)
                      ++ +++..++   +|||+|++....+++....  ..++..|..+..+..      .+.+.+++.+. ++++++++++.+|
T Consensus        69 a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  146 (382)
T d2bkwa1          69 GWDIFASNFILSKAPNKNVLVVSTGTFSDRFA--DCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDT  146 (382)
T ss_dssp             HHHHHHHHHSCTTCSCCEEEEECSSHHHHHHH--HHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEET
T ss_pred             HHHHHHHHHHHhcCCCCceEEEEechhhhhhh--hhccccccccccccccCCCCccchhHHHHHhhhccchheeeeeccc
Confidence            44 3444454   6899999998887666544  445666776665543      25677776664 6889999999999


Q ss_pred             CccccccHHHHHHHHHHc--CCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH
Q 021783           72 PRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  148 (307)
Q Consensus        72 ~tG~~~~~~~l~~~~~~~--~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~  148 (307)
                      .||...|++++.+.|+++  ++++++|++++.|..+ ++.++++|++++|.||+++||+|  .|+++.+++.+.......
T Consensus       147 ~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~s~~K~l~gP~G--~g~l~vs~~~~~~~~~~~  224 (382)
T d2bkwa1         147 STAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAG--LSISLCSSRFMDYALNDS  224 (382)
T ss_dssp             TTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSC--EEEEEECHHHHHHHTCHH
T ss_pred             cccccccchhhhhhccccccceeeeeecccccccccccccccCeeEEeecccccCcCCCc--hhhhhccHHHHhhhhhcc
Confidence            999999999999999887  4999999999999988 89999999999999999999999  999999977554321111


Q ss_pred             H-------------------H---h---cCCCCChhhHHHHhhcccc-----HHHHHHHHHHHHHHHHHHHhcCCCccEE
Q 021783          149 Q-------------------N---A---EGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKV  198 (307)
Q Consensus       149 ~-------------------~---~---~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~  198 (307)
                      .                   .   .   ...+++....+....+++.     ...+.++..+..+.+.+.+......  .
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~--~  302 (382)
T d2bkwa1         225 KNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQL--T  302 (382)
T ss_dssp             HHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCC--E
T ss_pred             cCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccc--c
Confidence            0                   0   0   1112222233333333432     2333344445555566665544322  1


Q ss_pred             ecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCC
Q 021783          199 NYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT  278 (307)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~  278 (307)
                      ........          .....++.|..++.+   ++.+.|+.+||.++.|....                      ..
T Consensus       303 ~~~~~~~~----------~~s~~v~~~~~~~~~---~~~~~L~~~gi~i~~G~~~~----------------------~~  347 (382)
T d2bkwa1         303 SVSRYPSN----------MSAHGLTAVYVADPP---DVIAFLKSHGVVIAGGIHKD----------------------IG  347 (382)
T ss_dssp             ESSCSSST----------TBCSSCEEEECSCHH---HHHHHHHHTTEECBCCCCTT----------------------TG
T ss_pred             ccccCchh----------ccCCcEEEEcCCCHH---HHHHHHHHCCeEEECCCChh----------------------hc
Confidence            11111100          112356677776443   45556677899888775411                      12


Q ss_pred             CCeEEEE-ecc----CChHHHHHHHHHHHhc
Q 021783          279 EDLVRIS-VGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       279 ~~~iRis-~~~----~~~~~~i~~l~~~l~~  304 (307)
                      ++.+||| +|.    +|++++++.|....+.
T Consensus       348 ~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~  378 (382)
T d2bkwa1         348 PKYIRIGHMGVTACNKNLPYMKNCFDLIKLA  378 (382)
T ss_dssp             GGEEEECCCGGGTSSTTCTHHHHHHHHHHHH
T ss_pred             CCEEEEeCCcCCCCHHHHHHHHHHHHHHHHH
Confidence            4569999 764    5677777777655443

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.85  E-value=1.3e-21  Score=171.40  Aligned_cols=266  Identities=13%  Similarity=0.077  Sum_probs=171.1

Q ss_pred             HHHHHh--cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC--------CChHHHHhhcC-----CCceEEEEeCC
Q 021783            5 AAVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIG-----PWTKLVWVESP   69 (307)
Q Consensus         5 ~~~~~~--~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~--------~d~~~l~~~l~-----~~~~~v~~~~~   69 (307)
                      +++++.  ..++++|+++...|++..    ..+...|+.++.++.        .|+++|++.++     .++.+|+++++
T Consensus       145 ~~l~a~r~~~~~~~vi~s~~~H~s~~----k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~  220 (434)
T d2z67a1         145 LCLSAARKKYGSNVVIYPYASHKSPI----KAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLT  220 (434)
T ss_dssp             HHHHHHHHHHCCCEEEEECCCCHHHH----HHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred             HHHHHHHHhhcCceEEEeccCCHHHH----HHHHHhCCcceEEEeecCCCccCCCHHHHHHHHHhhhhcCCceEEEeccC
Confidence            344443  347999999999999888    566778998888874        38999999986     46888899999


Q ss_pred             CCCccccccHHHHHHHHHHcCCEEEEeCccCCCCc-----C-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHH
Q 021783           70 TNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-----S-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        70 ~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~-----~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~  143 (307)
                      ++++|.+.|+++|+++|++||+++++|+||+.+..     + .+...++|++++|+||++++|.|  +|++..+++...+
T Consensus       221 ~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~~~~s~hK~l~~~~g--~~~~~~~~~~~~~  298 (434)
T d2z67a1         221 FFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIG--GGLVYSTDAEFIK  298 (434)
T ss_dssp             CCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCCSS--CEEEEESCHHHHH
T ss_pred             cCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCcceEEEcCccccccCCC--ccccccCcHHHHH
Confidence            99999999999999999999999999999986542     1 34567899999999999988888  8888888776655


Q ss_pred             HHHHHHHhcCCCCChhhHHHHh--hccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCc
Q 021783          144 ELYFLQNAEGSGLAPFDCWICL--RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS  221 (307)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (307)
                      ..................|...  .+.+.+....++..++++.+.+.+++......  ...+. .           ....
T Consensus       299 ~~~~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l~~~~g--~~ll~-~-----------~~~~  364 (434)
T d2z67a1         299 EISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTG--GKFLD-V-----------ESPI  364 (434)
T ss_dssp             HHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--CCBCC-C-----------CCSS
T ss_pred             HHHhhcccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhhhcC--ceecC-C-----------CCCc
Confidence            5443322222222222233322  22344445555666666666666654321000  01111 0           0122


Q ss_pred             eEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeeccccc-CCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHH
Q 021783          222 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM-SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK  300 (307)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~  300 (307)
                      .+.+..+ . +..++...|...||....+..      |... .+..       ..-...+++|++.+..++++.|+.|.+
T Consensus       365 ~~~~~~~-~-~~~~l~~~L~~~gI~g~~v~~------~l~~~g~~~-------~~~~~~~~l~~~~s~~~T~edID~~i~  429 (434)
T d2z67a1         365 ASCISVN-S-DPVEIAAKLYNLRVTGPRGIK------KTDHFGNCY-------LGTYTHDYIVMNAAIGVRTEDIVNSVS  429 (434)
T ss_dssp             EEEEECS-S-CHHHHHHHHHHTTEESCEEEC------TTCHHHHTC-------SSCCSCCEEEEECCTTCCHHHHHHHHH
T ss_pred             eeeeecC-C-CHHHHHHHHHHcCCeeeehhh------hccccCeee-------ecccCCCeEEEecCCCCCHHHHHHHHH
Confidence            2333332 1 245566667667774322111      1000 0000       011235789999999888888888888


Q ss_pred             HHhcC
Q 021783          301 ALRTG  305 (307)
Q Consensus       301 ~l~~~  305 (307)
                      .|+++
T Consensus       430 ~L~kI  434 (434)
T d2z67a1         430 KLEKI  434 (434)
T ss_dssp             HHHTC
T ss_pred             HHhcC
Confidence            88764

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.85  E-value=3.8e-20  Score=159.02  Aligned_cols=227  Identities=16%  Similarity=0.137  Sum_probs=160.9

Q ss_pred             cHH-HHHHHh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCc
Q 021783            2 AAL-AAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPR   73 (307)
Q Consensus         2 aal-~~~~~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~t   73 (307)
                      +|+ .++.++ +++||+|++++++|.++.    ..+...|+++++++.+      |+++++++++++|++|+++|   ..
T Consensus        57 ~Al~~al~al~~~~gdeVi~~~~~~~~~~----~ai~~~g~~pv~~d~~~~~~~~d~~~l~~~i~~~tkaIi~~h---~~  129 (376)
T d1mdoa_          57 AGMHIALMALGIGEGDEVITPSMTWVSTL----NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVH---YA  129 (376)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESSSCHHHH----HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBC---GG
T ss_pred             HHHHHHHHHhCCCCCCEEEEecccccccc----cchhccccceeeecccccccCCCHHHHHHhcCCCCeEEEEeC---CC
Confidence            355 566666 899999999999999999    5566789999999874      89999999999999999754   67


Q ss_pred             cccccHHHHHHHHHHcCCEEEEeCccCCCCcC---CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHH
Q 021783           74 QQICDIRKIAEMAHAHGALLLVDNSIMSPVLS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  150 (307)
Q Consensus        74 G~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~---~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~  150 (307)
                      |...|+++|.++|+++|+++|+|+||+.|...   .....|..++.+..+|.+.+ .+  +|+++++++.+.+.......
T Consensus       130 G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~-g~--GG~i~t~~~~l~~~~~~~~~  206 (376)
T d1mdoa_         130 GAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITC-AE--GGIVVTDNPQFADKLRSLKF  206 (376)
T ss_dssp             GCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCS-SS--CEEEEESCHHHHHHHHHHTB
T ss_pred             CCccchhHHHHHHHhcCceEEeccchhccCeeCCeecccccCccccCCCcCCCCC-CC--CCEEEEechhHHHHHHhhcc
Confidence            99999999999999999999999999988653   22334544444555798854 44  89999999988777665532


Q ss_pred             hc------------------------CCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCC
Q 021783          151 AE------------------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH  206 (307)
Q Consensus       151 ~~------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~  206 (307)
                      ..                        ...++...+......++.+....++..++++.+.+.++..+.+   ........
T Consensus       207 ~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~~~~~~~r~~~~~~~~~~L~~~~~~---~~~~~~~~  283 (376)
T d1mdoa_         207 HGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQ---PLSLPSWE  283 (376)
T ss_dssp             TTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSSCE---ECCCCSSC
T ss_pred             cCCcccccccccccccccccchhcccccccchhhhhhhhhhhhhhhHHHHHHhhhhhhhhhhccccccc---cccccccc
Confidence            21                        1234456677777777777777788888888888888866422   11111100


Q ss_pred             CchHHHhhhccCCCceEEEEeCCHH---HHHHHHhcCCcceeecCCC
Q 021783          207 PGHELHYSQAKGAGSVLSFLTGSLA---LSKHVVETTKYFSITVSFG  250 (307)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~v~~g  250 (307)
                               .......+.+.+....   ..+++++.|+.+||.++..
T Consensus       284 ---------~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~gI~~~~~  321 (376)
T d1mdoa_         284 ---------HIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLH  321 (376)
T ss_dssp             ---------EECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCC
T ss_pred             ---------ccccccccccccccccchhhHHHHHHHHHHCCCCeeeE
Confidence                     0001122233333221   2467888999999988754

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.6e-21  Score=168.85  Aligned_cols=131  Identities=11%  Similarity=0.041  Sum_probs=105.5

Q ss_pred             HHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhhcC---CCceEEEEeCCCCCccc
Q 021783            6 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIG---PWTKLVWVESPTNPRQQ   75 (307)
Q Consensus         6 ~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~l~---~~~~~v~~~~~~n~tG~   75 (307)
                      ++.+++.|||+|++++|+|+.+.    ..++..|++++.+|..       |.+++.+.+.   ++++++++++|+||||.
T Consensus       113 ~~~~~~~pgd~Vlv~~P~y~~y~----~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~  188 (397)
T d3tata_         113 DFLKRYFPESGVWVSDPTWENHV----AIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGA  188 (397)
T ss_dssp             HHHHHHCSSCCCEECSSCCTTHH----HHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCC
T ss_pred             HHhhhcCCCCcceecccCccccH----HHHHHcCCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCCCCCe
Confidence            33456899999999999999998    6677889999999973       5566555543   67888999999999999


Q ss_pred             ccc---HHHHHHHHHHcCCEEEEeCccCCCCcC----------CccCCCccEEEeccccccccCCCceeEEEEEcChhH
Q 021783           76 ICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        76 ~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~----------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~  141 (307)
                      +++   +++|.++|++|++++|+|++|..-.+.          ........+++.|+||.+ +.+|.|+||++++....
T Consensus       189 ~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RiG~~~~~~~~~  266 (397)
T d3tata_         189 DLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIF-SLYGERVGGLSVMCEDA  266 (397)
T ss_dssp             CCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHH-TBTTTCCBCCEEECSST
T ss_pred             eCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccc-cccCccccccccchhHH
Confidence            996   889999999999999999999743321          011223579999999999 67899999999986544

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=7.5e-21  Score=167.11  Aligned_cols=176  Identities=11%  Similarity=0.034  Sum_probs=127.2

Q ss_pred             hcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC--------CChHHHHhhcC----CCceEEEEeCCCCCccccc
Q 021783           10 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIG----PWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus        10 ~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~--------~d~~~l~~~l~----~~~~~v~~~~~~n~tG~~~   77 (307)
                      ...++++|+++...|++..    ..+...|++++.|+.        .|+++|++++.    +++.+|+++++++++|.+.
T Consensus       136 ~~~~~~~vi~~~~~H~s~~----~a~~~~g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~  211 (445)
T d3bc8a1         136 KRPKAKYIIWPRIDQKSCF----KSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPD  211 (445)
T ss_dssp             HCTTCCEEEEECCCCHHHH----HHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCC
T ss_pred             hCCCCCEEEEcCcccHHHH----HHHHHcCCeeEEEEeeccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeeh
Confidence            3567899999999999888    667788999888864        28999998885    4688999999999999999


Q ss_pred             cHHHHHHHHHHcCCEEEEeCccCCCCcC------CccCC-CccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHH
Q 021783           78 DIRKIAEMAHAHGALLLVDNSIMSPVLS------RPLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  150 (307)
Q Consensus        78 ~~~~l~~~~~~~~~~li~D~a~~~~~~~------~~~~~-~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~  150 (307)
                      |+++|+++|++||+++|+|+||+.+...      ..... ++|++++|+||++++|.|  +|+++.++....+.......
T Consensus       212 ~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~vd~~~~s~hK~~~~p~g--~~~l~~~~~~~~~~~~~~~~  289 (445)
T d3bc8a1         212 RLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVG--GAIIAGFNEPFIQDISKMYP  289 (445)
T ss_dssp             CHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSS--CEEEEESCHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCcCCcceEEecCccccccCCC--CceeeeCChHHHHHHHHHHh
Confidence            9999999999999999999999876432      11122 589999999999988888  88999988766655443333


Q ss_pred             hcCCCCChhhHHHHhhc--cccHHHHHHHHHHHHHHHHHHHhc
Q 021783          151 AEGSGLAPFDCWICLRG--VKTMALRVEKQQDNAQKIAEFLAS  191 (307)
Q Consensus       151 ~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~l~~~l~~  191 (307)
                      ..+........|.....  .+.+....+...++++.+.+.+++
T Consensus       290 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~  332 (445)
T d3bc8a1         290 GRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKK  332 (445)
T ss_dssp             SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCcchHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH
Confidence            33333222333433222  233344444555555555555543

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=8.6e-20  Score=157.84  Aligned_cols=130  Identities=14%  Similarity=0.079  Sum_probs=103.4

Q ss_pred             HHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHhh---cCCCceEEEEeCCCCCccccc
Q 021783            8 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASA---IGPWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         8 ~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~---l~~~~~~v~~~~~~n~tG~~~   77 (307)
                      +..+++||+|++++|.|+.+.    ..++..|++++.++..       +...+.+.   ..++++++++++|+||||.++
T Consensus       114 l~~~~~gd~Vlvp~P~y~~y~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~  189 (396)
T d2q7wa1         114 LAKNTSVKRVWVSNPSWPNHK----SVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDP  189 (396)
T ss_dssp             HHHHSCCCEEEEEESCCTHHH----HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCC
T ss_pred             HhhcccceEEEEecCCCccch----HHHHHcCCeeEecccccccccccccchHHHHHHHhccCcEEEEecCCcCCcCeec
Confidence            345789999999999999888    6678899999998873       34444443   346788999999999999999


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCccCCCCcC----------CccCCCccEEEeccccccccCCCceeEEEEEcChhHH
Q 021783           78 D---IRKIAEMAHAHGALLLVDNSIMSPVLS----------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  142 (307)
Q Consensus        78 ~---~~~l~~~~~~~~~~li~D~a~~~~~~~----------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~  142 (307)
                      +   +++|+++|++|++++|+|++|..-...          ........+++.|++|.+ +.+|.|.||++++.....
T Consensus       190 s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~-~~~G~R~G~~~~~~~~~~  266 (396)
T d2q7wa1         190 TLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNF-GLYNERVGACTLVAADSE  266 (396)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTT-TCGGGCCEEEEEECSSHH
T ss_pred             CHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccc-cccCCCccccccchhHHH
Confidence            6   789999999999999999999743321          011234678889999999 678999999999876443

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.83  E-value=1.6e-19  Score=154.24  Aligned_cols=134  Identities=13%  Similarity=0.107  Sum_probs=101.3

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      .++..+..+++.+++....+.................++..+..     +.+.......++++++.+++.+|.||...|+
T Consensus        67 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i  146 (361)
T d1m32a_          67 AVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPI  146 (361)
T ss_dssp             HHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCH
T ss_pred             HHHHHhhhhccccceeeehhhhhhHHHHhhhhhcccccccccccCCccchhhHHHHHhccCccceEEEeeecccccchhh
Confidence            44556777877777666655444333222222223333332222     2344455566899999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChh
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  140 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~  140 (307)
                      ++|.++|+++|+++++|++|+.|..+ +..++++|++++|.|||++||+|  .|+++.+++.
T Consensus       147 ~~i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~gp~G--~g~l~~~~~~  206 (361)
T d1m32a_         147 DEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPG--FAFVIAREQK  206 (361)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSS--EEEEEEEHHH
T ss_pred             hhhhhhhcccceeeEeecccccCcccccccccccceEEeeecccccCCCC--ceEEEechhh
Confidence            99999999999999999999999988 88999999999999999999999  9999998653

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.83  E-value=2.4e-19  Score=154.14  Aligned_cols=228  Identities=15%  Similarity=0.173  Sum_probs=166.8

Q ss_pred             cHH-HHHHHh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCc
Q 021783            2 AAL-AAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPR   73 (307)
Q Consensus         2 aal-~~~~~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~t   73 (307)
                      +|+ .+++++ +++||+|++++.+|.++.    ..+...|+++++++.+      |++++++.+.++|++|++   .+..
T Consensus        60 ~Al~lal~~l~~~~gdeVi~p~~t~~a~~----~ai~~~g~~p~~~d~~~~~~~~d~~~~~~~i~~~tk~i~~---~~~~  132 (384)
T d1b9ha_          60 HALELALQVMGVGPGTEVIVPAFTFISSS----QAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIMP---VHMA  132 (384)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESSSCTHHH----HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECC---BCGG
T ss_pred             HHHHHHHHHcCCCCCCEEEEecccccccc----ccccccccccccccccccccccchhhhccccccccccccc---cccc
Confidence            455 556665 799999999999999998    5677889999999864      899999999999999874   5667


Q ss_pred             cccccHHHHHHHHHHcCCEEEEeCccCCCCcCCccCC--CccEEEecc--ccccccCCCceeEEEEEcChhHHHHHHHHH
Q 021783           74 QQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLEL--GADIVMHSA--TKFIAGHSDVMAGVLAVKGERLAKELYFLQ  149 (307)
Q Consensus        74 G~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~d~~~~s~--~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~  149 (307)
                      |...|++++.++|+++++++|+|++|+.|...+....  ..|+.++||  +|.+.+ .+  +|+++++++.+.+......
T Consensus       133 g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf~~~K~i~~-g~--GG~i~t~~~~~~~~~~~~~  209 (384)
T d1b9ha_         133 GLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTA-GE--GGAVVFPDGETEKYETAFL  209 (384)
T ss_dssp             GCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCS-SS--CEEEEECTTCHHHHHHHHH
T ss_pred             ccccccccchhhhhhhhhhhhhhhceecccccCCEecCcccccceecccccccccc-cc--cchhhhhhHHHHHHHHHHH
Confidence            8899999999999999999999999998775432222  235555555  788743 33  8999999888877776655


Q ss_pred             Hhc-----------------CCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHH
Q 021783          150 NAE-----------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  212 (307)
Q Consensus       150 ~~~-----------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~  212 (307)
                      ...                 ...++.+.+.+....|+.+....++..++++.+.+.|+..+.+.-   .......     
T Consensus       210 ~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~ld~~~~~R~~~~~~y~~~L~~~~~i~~---~~~~~~~-----  281 (384)
T d1b9ha_         210 RHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWTLLSRLLGAIDGVVP---QGGDVRA-----  281 (384)
T ss_dssp             HTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTCEE---CCCCTTC-----
T ss_pred             hcCCCCccccccccccccccccccccchhhhhhhhhhhcccchhhhhhhhhhhhhhhhccccccc---ccccccc-----
Confidence            431                 123566788888888999988888888899999998987764421   1111100     


Q ss_pred             hhhccCCCceEEEEeC--CHHHHHHHHhcCCcceeecCCC
Q 021783          213 YSQAKGAGSVLSFLTG--SLALSKHVVETTKYFSITVSFG  250 (307)
Q Consensus       213 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~gi~v~~g  250 (307)
                         .......+.|.+.  ..+..+.+++.|..+||.++..
T Consensus       282 ---~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~GI~~~~~  318 (384)
T d1b9ha_         282 ---DRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAA  318 (384)
T ss_dssp             ---CBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEEC
T ss_pred             ---cccccccccceecccccccHHHHHHHHHHCCCCeeee
Confidence               0111234445543  3445678999999999987654

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.83  E-value=1.3e-20  Score=163.48  Aligned_cols=129  Identities=15%  Similarity=0.131  Sum_probs=102.9

Q ss_pred             cCCCCeEEEcCCCCcchHHHHhhh-cccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHc
Q 021783           11 LGTGEEIVAGDDLYGGTDRLLSRV-TPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH   89 (307)
Q Consensus        11 ~~~gd~Vlv~~~~~~~~~~~~~~~-~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~~   89 (307)
                      .++|++|++++..|++....+... ++.....+..-...++++++++++++|++|.+++++|.||.+.|+++|.++|+++
T Consensus       114 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~  193 (404)
T d1qz9a_         114 RSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHEC  193 (404)
T ss_dssp             HSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESSGGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHH
T ss_pred             cCCCcEEEEeccccchHHHHHHhhhheeeeeceeccccccchhHHHhcCCCceEEEEecccccccceecHHHHhcccccc
Confidence            478999999988887776554332 2222222222223488999999999999999999999999999999999999999


Q ss_pred             CCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChh
Q 021783           90 GALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER  140 (307)
Q Consensus        90 ~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~  140 (307)
                      |+.+++|++|+.|..+ +...+++|++++|+|||+++++| -+|+++.++..
T Consensus       194 ~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g-~~g~~~~~~~~  244 (404)
T d1qz9a_         194 GALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPG-SQAFVWVSPQL  244 (404)
T ss_dssp             TCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTT-CCCEEEECTTT
T ss_pred             ccceeEEeeccccccccccccccceEEEEechhhcccCCc-eEEEEEechhh
Confidence            9999999999999987 77788999999999999866554 15777777553

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=3.5e-20  Score=156.91  Aligned_cols=259  Identities=14%  Similarity=0.070  Sum_probs=168.7

Q ss_pred             HH-HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC--ChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            3 AL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--DLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         3 al-~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      |+ +++..++++||+|++...++++..  +...++..|.++..++..  +....+....++++.++++|..+.||...|+
T Consensus        62 a~e~~~~nl~~~g~~vlv~~~G~f~~~--~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~h~eTstG~~~~i  139 (348)
T d1iuga_          62 AMEALVKNLFAPGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDTPRPEDVAKEGYAGLLLVHSETSTGALADL  139 (348)
T ss_dssp             HHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCTTTSCCSSCSEEEEESEETTTTEECCH
T ss_pred             HHHHHHHhcccccccceeecchHHHHH--HHHHHHhcCcccccccccCCCccccccccccCCCeeEEEecchhhhhhccH
Confidence            45 456678999999998887765554  446778888888777753  2222233345788999999999999999999


Q ss_pred             HHHHHHHHHcC--CEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHH--------HH-H
Q 021783           80 RKIAEMAHAHG--ALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE--------LY-F  147 (307)
Q Consensus        80 ~~l~~~~~~~~--~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~--------~~-~  147 (307)
                      ++|.++|++++  .++++|++++.|..+ +++.+++|++++|.+|+++||+|  .|+++.+++.+.+.        +. .
T Consensus       140 ~~i~~~~~~~~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gppG--~~~v~~s~~~le~~~~~~~~~dl~~~  217 (348)
T d1iuga_         140 PALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPG--LGFVALSPRALERLKPRGYYLDLARE  217 (348)
T ss_dssp             HHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSC--EEEEEECHHHHHTCCCCSSTTCHHHH
T ss_pred             HHHHHHHHhhhccceeechhhhcccccccccccccCCEEEeccccceecCCc--eeeeeechHHHhhhcccccccchhhh
Confidence            99999999984  889999999999877 88889999999999999999999  99999997754421        01 1


Q ss_pred             HHH----hcCCCCChhhHHHHhhccccH----HHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCC
Q 021783          148 LQN----AEGSGLAPFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  219 (307)
Q Consensus       148 ~~~----~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (307)
                      ...    ....+++....+....+++.+    ....+........+.+..+.. ++        ...+.        ...
T Consensus       218 ~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gl--------~~~~~--------~~s  280 (348)
T d1iuga_         218 LKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG-GL--------RPVPK--------RFS  280 (348)
T ss_dssp             HHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT-TC--------EESCS--------SBC
T ss_pred             hhhhccCcccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhh-hh--------ccChh--------hcC
Confidence            111    111233333333333334322    222221111222222222221 11        10110        112


Q ss_pred             CceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEe-c---cCChHHHH
Q 021783          220 GSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV-G---IEDVNDLI  295 (307)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~-~---~~~~~~~i  295 (307)
                      ..+.+|.+++..+..++.+.|+++|+.+..|.. .                      .....+||+. |   .+|++..+
T Consensus       281 ~~v~~~~~P~g~~~~~~~~~l~~~gi~i~~G~~-~----------------------l~~~~~RIg~mG~~~~~d~~~~~  337 (348)
T d1iuga_         281 PAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQG-P----------------------LKGKVFRLSLMGAYDRYEALGVA  337 (348)
T ss_dssp             TTCEEEECCTTCCHHHHHHHHHTTTEECEECCG-G----------------------GTTTEEEECCCSSCCHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHCCeEEEcCcc-c----------------------cCCCEEEEeCCCCCCHHHHHHHH
Confidence            346788885433477888889889998876642 0                      1234699985 2   37788888


Q ss_pred             HHHHHHHhcC
Q 021783          296 SDLDKALRTG  305 (307)
Q Consensus       296 ~~l~~~l~~~  305 (307)
                      +.|+++|+++
T Consensus       338 ~~l~~~l~~~  347 (348)
T d1iuga_         338 GMFREVLEEI  347 (348)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8888888764

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.81  E-value=1e-19  Score=156.99  Aligned_cols=135  Identities=16%  Similarity=0.233  Sum_probs=109.8

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcC-CCceEEEEeCCCCCcccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG-PWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~   78 (307)
                      +++..++.+|++|++....+.+....  ..+...+...+.++..     +.++.++... .+++++++++.+|.||...|
T Consensus        83 a~~~~l~~~~~~vl~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~  160 (388)
T d2ch1a1          83 AMLSNLLEEGDRVLIAVNGIWAERAV--EMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP  160 (388)
T ss_dssp             HHHHHHCCTTCEEEEEESSHHHHHHH--HHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred             HHHHHhccccccccccccccccccch--hhhhhhcccccccccccccccchhhhhhhhccCCcceeeeeecccccccccc
Confidence            56667889999999888877665433  4455667666666553     4555555543 67899999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHH
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~  143 (307)
                      ++++.++|+++|+++++|++++.|..+ +..++++|++++|.+|+++||+|  +|+++.++..+..
T Consensus       161 ~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp~G--~g~~~~~~~~~~~  224 (388)
T d2ch1a1         161 LEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPG--ITPISISPKALDV  224 (388)
T ss_dssp             CTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSS--CEEEEECHHHHHH
T ss_pred             hhhhcchhccccceeeeeeeecccccccchhccCceEEEEccccccCCCCe--EEEEeccHHHHHh
Confidence            999999999999999999999999887 88999999999999999999999  9999998665543

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.79  E-value=5.9e-18  Score=145.06  Aligned_cols=181  Identities=15%  Similarity=0.079  Sum_probs=137.8

Q ss_pred             cHH-HHHHHh-cCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------Ch--HHHHhhcCCCceEEEEeCCCC
Q 021783            2 AAL-AAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DL--DEVASAIGPWTKLVWVESPTN   71 (307)
Q Consensus         2 aal-~~~~~~-~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~--~~l~~~l~~~~~~v~~~~~~n   71 (307)
                      +|+ .++.++ +++||+|++|+.+|+++.    ..+...|++++++|.+      +.  ++....+.++++++++++   
T Consensus        47 ~Al~lal~~l~~~~gdeVi~p~~t~~a~~----~~~~~~g~~pv~~Di~~~~~~~~~~~~~~~~~~~~~~~aii~~~---  119 (374)
T d1o69a_          47 AALHLALRVAGVKQDDIVLASSFTFIASV----APICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH---  119 (374)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESSSCGGGT----HHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC---
T ss_pred             HHHHHHHHHcCCCCcCEEEeCCcchHhhH----HHHhhccceeEecccccccccccccccccchhcccccccccccc---
Confidence            355 555665 889999999999999998    5567789999999975      12  234455668899999754   


Q ss_pred             CccccccHHHHHHHHHHcCCEEEEeCccCCCCcCCccCC--CccEEEeccc--cccccCCCceeEEEEEcChhHHHHHHH
Q 021783           72 PRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLEL--GADIVMHSAT--KFIAGHSDVMAGVLAVKGERLAKELYF  147 (307)
Q Consensus        72 ~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~d~~~~s~~--K~~~g~~g~~~G~~~~~~~~~~~~~~~  147 (307)
                      ..|..++++++.++|+++|++||+|+||+.|........  -.|+.++||+  |.+.. .|  +|+++++++.+.+....
T Consensus       120 ~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~~gd~~~fSf~~~K~l~t-ge--GG~i~tnn~~~~~~~~~  196 (374)
T d1o69a_         120 LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITT-SG--GGMLIGKNKEKIEKARF  196 (374)
T ss_dssp             GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCC-SS--CEEEEESCHHHHHHHHH
T ss_pred             cccchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecCCCCceEEEeccCcccccc-cc--ceeehhhhHHHHHhhcc
Confidence            468999999999999999999999999998875432222  2488888885  77743 44  89999998888777665


Q ss_pred             HHHhc--------------CCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 021783          148 LQNAE--------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       148 ~~~~~--------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~  192 (307)
                      .....              ...++...+.+....++.+....++..++++.+.+.|...
T Consensus       197 ~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~~~i~~r~~i~~~y~~~L~~~  255 (374)
T d1o69a_         197 YSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEY  255 (374)
T ss_dssp             HTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ccccccccccccccccCCccccccchhhhhhHHHHhhhhhhcchhHHHHHHHHhhcccc
Confidence            54321              1346677888888888888887777788888888887654

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.79  E-value=9.5e-19  Score=150.15  Aligned_cols=134  Identities=15%  Similarity=0.214  Sum_probs=107.4

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHh-hcCCCceEEEEeCCCCCcccccc
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVAS-AIGPWTKLVWVESPTNPRQQICD   78 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~-~l~~~~~~v~~~~~~n~tG~~~~   78 (307)
                      +++..++.+|+++++....|.+....  ..+...+.....+...     +.+..+. ..+++++++.+++.+|.||...|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~  161 (377)
T d1vjoa_          84 ATIANAVEPGDVVLIGVAGYFGNRLV--DMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQP  161 (377)
T ss_dssp             HHHHHHCCTTCEEEEEESSHHHHHHH--HHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred             HHHHhccccccccceeeechhhhhhh--hhhhhhcccccccccCCCCcccchhhhhhhhcCcceeeeeeeeeccceeeec
Confidence            56667889999999988888655433  4455566665555542     3333333 33468899999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHH
Q 021783           79 IRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA  142 (307)
Q Consensus        79 ~~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~  142 (307)
                      ++++.++||++|+++++|++++.|..+ +...+++|++++|.+|+++||+|  +|+++.++..+.
T Consensus       162 i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~gp~g--~~~~~~~~~~~~  224 (377)
T d1vjoa_         162 LEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPG--ASPFTMSSRAIE  224 (377)
T ss_dssp             CTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSS--CEEEEECHHHHH
T ss_pred             hhhhhhhhhhccceEEEecchhhhhhhhcccccccceeeecccccccCCCE--EEEecchhhHHh
Confidence            999999999999999999999999887 88899999999999999999998  888888865444

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=1.9e-19  Score=155.53  Aligned_cols=131  Identities=15%  Similarity=0.117  Sum_probs=101.8

Q ss_pred             HHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------ChHHHHh---hcCCCceEEEEeCCCCCccccc
Q 021783            8 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVAS---AIGPWTKLVWVESPTNPRQQIC   77 (307)
Q Consensus         8 ~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~---~l~~~~~~v~~~~~~n~tG~~~   77 (307)
                      ..+.++||+|++++|.|+.+.    ..++..|++++.++..       +.+++++   ...++++++++++||||||.++
T Consensus       111 ~~~~~~gd~V~~p~p~~~~y~----~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~  186 (394)
T d2ay1a_         111 ARMANPDLRVFVSDPTWPNHV----SIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANL  186 (394)
T ss_dssp             HHHHCTTCCEEEEESCCHHHH----HHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCC
T ss_pred             hhhcCCceEEEEecccccchH----HHHHHcCCEEEEecccchhcccccchhHHHHHhhcccCcEEEEeCCCCCCCCCCC
Confidence            346799999999999999888    6677889999988862       3333333   3446788888899999999999


Q ss_pred             c---HHHHHHHHHHcCCEEEEeCccCCCCcCC----------ccCCCccEEEeccccccccCCCceeEEEEEcChhHHH
Q 021783           78 D---IRKIAEMAHAHGALLLVDNSIMSPVLSR----------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK  143 (307)
Q Consensus        78 ~---~~~l~~~~~~~~~~li~D~a~~~~~~~~----------~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~  143 (307)
                      +   +++|+++|++|++++|+|++|..-....          .......+++.|+||.+ +.+|.|+|++.+.......
T Consensus       187 s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~-~~~G~R~G~~~~~~~~~~~  264 (394)
T d2ay1a_         187 TLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNF-GIYRERTGCLLALCADAAT  264 (394)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTT-TCGGGCEEEEEEECSSHHH
T ss_pred             CHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccc-cCCcccccchhhchhHHHH
Confidence            6   8899999999999999999997443220          11223467888999998 5689999999998765443

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.78  E-value=8.5e-18  Score=143.84  Aligned_cols=276  Identities=13%  Similarity=0.129  Sum_probs=183.0

Q ss_pred             cHH-HHHHHh-cCCC--CeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCC
Q 021783            2 AAL-AAVTHL-LGTG--EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNP   72 (307)
Q Consensus         2 aal-~~~~~~-~~~g--d~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~   72 (307)
                      +|+ .++.++ +++|  |+|++++.+|+++.    ..+...|++++++|.+     +.+++++.++++|++|+++|   .
T Consensus        57 ~Al~~al~al~~~~~~~~eVi~p~~t~~a~~----~ai~~~G~~pv~vDi~~~~~~~~~~~~~~~~~~t~avi~vh---~  129 (371)
T d2fnua1          57 SALLTLYRNFSEFSADRNEIITTPISFVATA----NMLLESGYTPVFAGIKNDGNIDELALEKLINERTKAIVSVD---Y  129 (371)
T ss_dssp             HHHHHHHHHSSCCCTTSCEEEECSSSCTHHH----HHHHHTTCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEEC---G
T ss_pred             HHHHHHHHHhcccCCCCCeeecccccccccc----eeeeccCcccccccccccccccchhhhhhccchhhcccccc---c
Confidence            345 444443 4444  58999999999888    5567799999999975     56778888889999999764   5


Q ss_pred             ccccccHHHHHHHHHHcCCEEEEeCccCCCCcCCccCC--CccEEEecc--ccccccCCCceeEEEEEcChhHHHHHHHH
Q 021783           73 RQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLEL--GADIVMHSA--TKFIAGHSDVMAGVLAVKGERLAKELYFL  148 (307)
Q Consensus        73 tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~d~~~~s~--~K~~~g~~g~~~G~~~~~~~~~~~~~~~~  148 (307)
                      .|...+++++.++|+++|+++|+|+||+.|........  .-|+.++||  .|.+.+ .+  +|+++++++.+.+.+...
T Consensus       130 ~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~K~l~~-g~--GG~i~t~~~~~~~~~~~~  206 (371)
T d2fnua1         130 AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITT-AE--GGAVVTNDSELHEKMKLF  206 (371)
T ss_dssp             GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCC-SS--CEEEEESCHHHHHHHHHH
T ss_pred             cccccccccccccccccchhhccchhhccCceeccccCCcccccccccccccccccc-cc--ceEEEeechhhhhhcccc
Confidence            79999999999999999999999999998875433222  246666666  788844 44  899999998888877765


Q ss_pred             HHhc----------------CCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHH
Q 021783          149 QNAE----------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  212 (307)
Q Consensus       149 ~~~~----------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~  212 (307)
                      ....                ...++...+.+....++.+....++..+++..+.+.|...+.+.. ..+....       
T Consensus       207 ~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l~~~~~~R~~~~~~y~~~l~~~~~~~~-~~~~~~~-------  278 (371)
T d2fnua1         207 RSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTP-LHPLLKD-------  278 (371)
T ss_dssp             TBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEE-SGGGCSS-------
T ss_pred             cccccccccccccccccccccccccchhhhhhhhhhhhccchhhhhhhhhhhhcccccccccccc-ccccccc-------
Confidence            4321                234667788888888888888888878888888888876543211 1110000       


Q ss_pred             hhhccCCCceEEEEeCCH--HHHHHHHhcCCcceeecCCCCccceeeccccc---CCCCCcHHHHHhcCCCCCeEEEEec
Q 021783          213 YSQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISMPCFM---SHASIPVEVRQARGLTEDLVRISVG  287 (307)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~iRis~~  287 (307)
                          ......+.+.+...  ...+.+.+.|..+||.++.... .+...|...   ....++.....    .+..+.|.++
T Consensus       279 ----~~~~~~~~i~~~~~~~~~r~~~~~~L~~~gI~~~~~y~-pl~~~~~~~~~~~~~~~pnae~~----~~~~l~LP~~  349 (371)
T d2fnua1         279 ----KSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYK-PIYQYQLYQQLFNTAPLKSAEDF----YHAEISLPCH  349 (371)
T ss_dssp             ----CCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCC-CGGGSHHHHHHHCCCCCHHHHHH----HHHEEEECCC
T ss_pred             ----ccccccccccccccchhHHHHHHHHHHHCCCCcceeCc-ccccCHHHHhccccCCCHHHHHH----HhCeEECcCC
Confidence                11223445555432  3357888999999998876432 122222111   11222222111    1234555443


Q ss_pred             c----CChHHHHHHHHHHHhc
Q 021783          288 I----EDVNDLISDLDKALRT  304 (307)
Q Consensus       288 ~----~~~~~~i~~l~~~l~~  304 (307)
                      .    +|++++++.+.+.+++
T Consensus       350 ~~lt~~di~~I~~~i~~~~~~  370 (371)
T d2fnua1         350 ANLNLESVQNIAHSVLKTFES  370 (371)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHc
Confidence            2    6777788888887764

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.76  E-value=1.3e-17  Score=146.92  Aligned_cols=188  Identities=12%  Similarity=-0.083  Sum_probs=116.1

Q ss_pred             HHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-------------Ch---------HHHHhhcCCCc
Q 021783            4 LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------------DL---------DEVASAIGPWT   61 (307)
Q Consensus         4 l~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------------d~---------~~l~~~l~~~~   61 (307)
                      ++++.++++|||+|+++..+|.+....+.. +...+..+...+.+             +.         .+++++...++
T Consensus        96 ~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~-l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (462)
T d1c4ka2          96 NTVTSALVSNGDLVLFDRNNHKSVYNSALA-MAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRP  174 (462)
T ss_dssp             HHHHHHHCCTTCEEEEETTCCHHHHHHHTT-TTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCC
T ss_pred             HHHHHHhcCCCCeEEecccchHHHHHHHHH-HhcCCceeeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCC
Confidence            366778899999999999999888754322 22233333333221             11         22344455667


Q ss_pred             eEEEEeCCCCCccccccHHHHHHHHHHcCCEEEEeCccCCCCcCCc--------------cCCCccEEEeccccccccCC
Q 021783           62 KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP--------------LELGADIVMHSATKFIAGHS  127 (307)
Q Consensus        62 ~~v~~~~~~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~--------------~~~~~d~~~~s~~K~~~g~~  127 (307)
                      +.+++.+.+|..|.+.|+++|.++|+++|+++++|+||+.+.....              ...++|++++|+||+++++.
T Consensus       175 ~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~  254 (462)
T d1c4ka2         175 FRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS  254 (462)
T ss_dssp             BSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT
T ss_pred             ceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCccccccc
Confidence            7777777778899999999999999999999999999986543211              12346999999999997666


Q ss_pred             CceeEEEEEcChhHH--------HHHHHHHHhcC-CCCChhhHHHHhh-----ccccHHHHHHHHHHHHHHHHHHHhcCC
Q 021783          128 DVMAGVLAVKGERLA--------KELYFLQNAEG-SGLAPFDCWICLR-----GVKTMALRVEKQQDNAQKIAEFLASHP  193 (307)
Q Consensus       128 g~~~G~~~~~~~~~~--------~~~~~~~~~~~-~~~~~~~~~~~~~-----~l~~~~~~~~~~~~~~~~l~~~l~~~~  193 (307)
                      +  ++++..++..+.        +.......... .+++.........     ........+++..++++.+++.+++..
T Consensus       255 ~--g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~  332 (462)
T d1c4ka2         255 Q--TSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAG  332 (462)
T ss_dssp             T--CEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             c--eEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5  666666654431        12222222221 2222111111111     111223345666777888888887765


Q ss_pred             C
Q 021783          194 R  194 (307)
Q Consensus       194 ~  194 (307)
                      .
T Consensus       333 ~  333 (462)
T d1c4ka2         333 S  333 (462)
T ss_dssp             C
T ss_pred             h
Confidence            3

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=5e-18  Score=148.10  Aligned_cols=251  Identities=10%  Similarity=-0.036  Sum_probs=166.6

Q ss_pred             CeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC------ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHH--
Q 021783           15 EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA--   86 (307)
Q Consensus        15 d~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~--   86 (307)
                      ..++++...|.+..    .+++.+|++++.++.+      |+++++++++++|.+|+++..+|.||.+.|+++|.+++  
T Consensus       152 ~~~~~~~~~H~s~~----Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~~i~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~  227 (450)
T d1pmma_         152 KPNLVCGPVQICWH----KFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDK  227 (450)
T ss_dssp             CCEEEESSCCHHHH----HHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHH
T ss_pred             CceEEecccHHHHH----HHHHHcCCCceEeeecCCCCcCcHHHHHHHhhhCceEEEeeeeeccCCCccccchhhHHHHH
Confidence            35778777776655    8899999999999874      89999999999999999999999999999988777775  


Q ss_pred             ----HHcCCEEEEeCccCCCCcC--------CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH-H----
Q 021783           87 ----HAHGALLLVDNSIMSPVLS--------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-Q----  149 (307)
Q Consensus        87 ----~~~~~~li~D~a~~~~~~~--------~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~-~----  149 (307)
                          +++|+++++|+|++.+..+        +..-.++|.+..|+|||+.+|.|  +|+++.+++......... .    
T Consensus       228 ~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~yl~  305 (450)
T d1pmma_         228 FQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLG--CGWVIWRDEEALPQELVFNVDYLG  305 (450)
T ss_dssp             HHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSS--CEEEEESSGGGSCGGGCEEEEETT
T ss_pred             HHHHhccCcEEEeehhhccceeeeechhhhhhhcccceeEeecChhhccCCCCC--eeEEEecChhhhhhhcccccCcCC
Confidence                6679999999999765432        11123699999999999988988  999999976542211100 0    


Q ss_pred             -Hh-----cCCCCCh--hhHHHHh--hccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCC
Q 021783          150 -NA-----EGSGLAP--FDCWICL--RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA  219 (307)
Q Consensus       150 -~~-----~~~~~~~--~~~~~~~--~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (307)
                       ..     .++....  ...|..+  .+.+.+....++..++++.+.+.+++.+.+. +..++            .+...
T Consensus       306 ~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~e-l~~~~------------~p~~~  372 (450)
T d1pmma_         306 GQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYE-FICTG------------RPDEG  372 (450)
T ss_dssp             EEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEE-EEEEC------------CTTTB
T ss_pred             CCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeE-EEeCC------------CCCCc
Confidence             00     1111111  2233322  3345667777788888888999998877542 22221            01113


Q ss_pred             CceEEEEeCCH----HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CCh
Q 021783          220 GSVLSFLTGSL----ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDV  291 (307)
Q Consensus       220 ~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~  291 (307)
                      -++++|++.+.    -+..++.+.|..+|..+..      ...|..              ..+...+|+.+..    +.+
T Consensus       373 l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~------~~~p~~--------------~~~~~~lRvvv~~~~t~e~~  432 (450)
T d1pmma_         373 IPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPA------FTLGGE--------------ATDIVVMRIMCRRGFEMDFA  432 (450)
T ss_dssp             SSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCE------EECCTT--------------CTTCEEEEEECCTTCCHHHH
T ss_pred             eEEEEEecCCcccCCCCHHHHHHHHHHcCCeeec------cCcCCC--------------cCCcEEEEEEccCCCCHHHH
Confidence            46789988432    1355677777777754432      111110              1123459999964    456


Q ss_pred             HHHHHHHHHHHhc
Q 021783          292 NDLISDLDKALRT  304 (307)
Q Consensus       292 ~~~i~~l~~~l~~  304 (307)
                      |++++.|+++++.
T Consensus       433 d~lv~dl~~~v~~  445 (450)
T d1pmma_         433 ELLLEDYKASLKY  445 (450)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6677777776654

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.72  E-value=3.3e-16  Score=130.99  Aligned_cols=262  Identities=18%  Similarity=0.193  Sum_probs=164.0

Q ss_pred             cHHHHHHHhcCCCCeEEEcCCCCcchHHHHh-hhcccCCcEEEEecCC------ChHHHHhhcC-CCceEEEEeCCCCCc
Q 021783            2 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLS-RVTPKTGVVVKRVNTC------DLDEVASAIG-PWTKLVWVESPTNPR   73 (307)
Q Consensus         2 aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~------d~~~l~~~l~-~~~~~v~~~~~~n~t   73 (307)
                      |+++++.++++|||+|+..+..+++...--. .-......+.+..+.+      |.+++++.+. .++++|++....+| 
T Consensus        97 An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~-  175 (405)
T d1kl1a_          97 ANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYP-  175 (405)
T ss_dssp             HHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC-
T ss_pred             HHHHHHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHhhCcceEEecccccc-
Confidence            5668889999999999988876555441100 0001112455554442      8889988886 68899998755554 


Q ss_pred             cccccHHHHHHHHHHcCCEEEEeCccC-----CCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHHHHHH
Q 021783           74 QQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  148 (307)
Q Consensus        74 G~~~~~~~l~~~~~~~~~~li~D~a~~-----~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~  148 (307)
                       ...|.+++.++|++.|+++++|.+|-     .+..+++.. .+|++++|+||++.||+   +|+++++++ ..+.+...
T Consensus       176 -r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~-~aDvvt~tThKtlrGPr---gg~I~~~~~-~~~~i~~a  249 (405)
T d1kl1a_         176 -RIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVP-YAHFVTTTTHKTLRGPR---GGMILCQEQ-FAKQIDKA  249 (405)
T ss_dssp             -SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTT-TCSEEEEESSSTTCCCS---CEEEEECHH-HHHHHHHH
T ss_pred             -cccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhh-hhhheeccccccccCCC---CceEEecch-hHHHHHhh
Confidence             67899999999999999999999995     566778886 48999999999998887   699999854 44444333


Q ss_pred             H-HhcCCCCC-hhhHH----HHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCce
Q 021783          149 Q-NAEGSGLA-PFDCW----ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV  222 (307)
Q Consensus       149 ~-~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  222 (307)
                      . +..-+.+. ...+.    +..+.-..+....++..+|++.|.+.|.++.-  .+ ..+              .....+
T Consensus       250 vfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~--~v-v~g--------------gTd~H~  312 (405)
T d1kl1a_         250 IFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGF--TL-VSG--------------GTDNHL  312 (405)
T ss_dssp             HTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC--EE-GGG--------------SCSSSE
T ss_pred             hCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCc--ee-ecC--------------CCccce
Confidence            2 22111111 11111    22222345677788889999999999987631  11 111              112456


Q ss_pred             EEEEeCCHH-HHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec------c--CChHH
Q 021783          223 LSFLTGSLA-LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG------I--EDVND  293 (307)
Q Consensus       223 ~~~~~~~~~-~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~------~--~~~~~  293 (307)
                      +++.+.+.. .....-+.|...||.+.--      ..|+-. .          .....+-|||...      +  +|+.+
T Consensus       313 vlvdl~~~~~~g~~ae~~Le~agI~~Nkn------~iP~d~-~----------~~~~~SGiRiGT~a~TtrG~~e~dm~~  375 (405)
T d1kl1a_         313 LLVDLRPQQLTGKTAEKVLDEVGITVNKN------TIPYDP-E----------SPFVTSGIRIGTAAVTTRGFGLEEMDE  375 (405)
T ss_dssp             EEEECGGGTCCHHHHHHHHHHHTEECEEC------CCTTCS-S----------CTTTCSEEEEECHHHHHTTCCHHHHHH
T ss_pred             eeccccccCCcHHHHHHHHHHcCeEEcCC------cCCCCC-C----------CCCCCCceeecCHHHHhCCCCHHHHHH
Confidence            666663211 2334444455556655421      111100 0          0112355999984      2  78888


Q ss_pred             HHHHHHHHHhc
Q 021783          294 LISDLDKALRT  304 (307)
Q Consensus       294 ~i~~l~~~l~~  304 (307)
                      +.+.+.++|+.
T Consensus       376 ia~~I~~~l~~  386 (405)
T d1kl1a_         376 IAAIIGLVLKN  386 (405)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhc
Confidence            88888888754

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=7.8e-16  Score=129.31  Aligned_cols=262  Identities=19%  Similarity=0.189  Sum_probs=165.0

Q ss_pred             cHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCC--cEEEEecC-----CChHHHHhhcC-CCceEEEEeCCCCCc
Q 021783            2 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG--VVVKRVNT-----CDLDEVASAIG-PWTKLVWVESPTNPR   73 (307)
Q Consensus         2 aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g--~~~~~v~~-----~d~~~l~~~l~-~~~~~v~~~~~~n~t   73 (307)
                      |++++++++++|||+|+..+..+++....- ......|  .+.+..+.     .|.+++++... .++++|++....+  
T Consensus       100 AN~av~~All~pGD~Il~l~l~~GGHlshg-~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~kPklIi~G~S~y--  176 (416)
T d1dfoa_         100 ANFAVYTALLEPGDTVLGMNLAHGGHLTHG-SPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAY--  176 (416)
T ss_dssp             HHHHHHHHHCCTTCEEEEECTTTTCCGGGT-CTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHHCCSEEEEECSSC--
T ss_pred             HHHHHHHHhcCCCCeeeecccccccccccc-ccccccCceEEEEecccCCccCccHHHHHHHHHHhccceEEeccccc--
Confidence            566888999999999999998887765210 0011111  23344433     28888888876 6889999875444  


Q ss_pred             cccccHHHHHHHHHHcCCEEEEeCccC-----CCCcCCccCCCccEEEeccccccccCCCceeEEEEEcC--hhHHHHHH
Q 021783           74 QQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG--ERLAKELY  146 (307)
Q Consensus        74 G~~~~~~~l~~~~~~~~~~li~D~a~~-----~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~--~~~~~~~~  146 (307)
                      ....|.+++.++|++.|+++++|.+|-     .+..+++..+ +|++++|+||+|.||+   +|++++++  +.+.+.+.
T Consensus       177 ~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~-aDvvt~tThKtlrGPr---ggiI~~~~~~~~~~~~i~  252 (416)
T d1dfoa_         177 SGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH-AHVVTTTTHKTLAGPR---GGLILAKGGSEELYKKLN  252 (416)
T ss_dssp             CSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT-SSEEEEESSSTTCCCS---CEEEEESSCCHHHHHHHH
T ss_pred             ccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccc-cceeeeehhhcccCCC---ceEEEeccchHhHHHHHH
Confidence            478899999999999999999999996     4566788776 6999999999998886   79999974  34444443


Q ss_pred             HHHHhc--CCCCCh-hh---HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCC
Q 021783          147 FLQNAE--GSGLAP-FD---CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG  220 (307)
Q Consensus       147 ~~~~~~--~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  220 (307)
                      ......  ++.... .+   ..+..+.-..+....++..+|++.|.+.|.++.-  .+. .+              ....
T Consensus       253 ~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~--~iv-~g--------------gTdn  315 (416)
T d1dfoa_         253 SAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGY--KVV-SG--------------GTDN  315 (416)
T ss_dssp             HHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTC--EEG-GG--------------SCSS
T ss_pred             hhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCCc--ccc-cC--------------CCCC
Confidence            332111  111111 11   1111112235577788899999999999987631  111 11              1134


Q ss_pred             ceEEEEeCCHH-HHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEec------c--CCh
Q 021783          221 SVLSFLTGSLA-LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG------I--EDV  291 (307)
Q Consensus       221 ~~~~~~~~~~~-~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~------~--~~~  291 (307)
                      .++.+.+.+.. .....-+.|...||.+.--.      .|.-. .          ....++-|||...      +  +|+
T Consensus       316 Hlvlvdl~~~~~~G~~a~~~Le~~gI~~Nkn~------iP~d~-~----------~~~~~SGiRiGT~a~TtrG~~e~d~  378 (416)
T d1dfoa_         316 HLFLVDLVDKNLTGKEADAALGRANITVNKNS------VPNDP-K----------SPFVTSGIRVGTPAITRRGFKEAEA  378 (416)
T ss_dssp             SEEEEECGGGTCCHHHHHHHHHHTTEECEECC------CTTCS-S----------CTTTCSEEEEECHHHHHTTCCHHHH
T ss_pred             ceeEEEecccCCCHHHHHHHHHHcCeEEeCCc------CCCCC-C----------CCCCCCceEeCCHHHHhCCCCHHHH
Confidence            56677763221 24555555666677554211      11100 0          0112455999984      2  677


Q ss_pred             HHHHHHHHHHHhc
Q 021783          292 NDLISDLDKALRT  304 (307)
Q Consensus       292 ~~~i~~l~~~l~~  304 (307)
                      +++.+.+.++|+.
T Consensus       379 ~~iA~~I~~~l~~  391 (416)
T d1dfoa_         379 KELAGWMCDVLDS  391 (416)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc
Confidence            7887777777753

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.71  E-value=1e-16  Score=140.53  Aligned_cols=206  Identities=16%  Similarity=0.181  Sum_probs=142.5

Q ss_pred             eEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCC------CceEEEEeCCCCCccccccHHHHHH
Q 021783           16 EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGP------WTKLVWVESPTNPRQQICDIRKIAE   84 (307)
Q Consensus        16 ~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~------~~~~v~~~~~~n~tG~~~~~~~l~~   84 (307)
                      .|++++..|++..    .++...|..++.+|.+     |+++|++.+++      .+.+|+.+..++.+|.+-|+++|.+
T Consensus       184 vv~~s~~~H~Si~----ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~  259 (476)
T d1js3a_         184 VAYASDQAHSSVE----RAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGP  259 (476)
T ss_dssp             EEEEETTCCHHHH----HHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHH
T ss_pred             EEEecccccHHHH----HHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHH
Confidence            5789999998887    6677788888888875     89999999862      3457777889999999999999999


Q ss_pred             HHHHcCCEEEEeCccCCCCcCCc--cC-----CCccEEEeccccccccCCCceeEEEEEcChhHHHHH--------HHHH
Q 021783           85 MAHAHGALLLVDNSIMSPVLSRP--LE-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL--------YFLQ  149 (307)
Q Consensus        85 ~~~~~~~~li~D~a~~~~~~~~~--~~-----~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~--------~~~~  149 (307)
                      +|++||+|+++|+||+.......  ..     ..+|.++.++|||++.|.+  +|+++.++.......        ....
T Consensus       260 i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~--~g~~l~r~~~~~~~~~~~~~~~~~~~~  337 (476)
T d1js3a_         260 ICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFD--CSAMWVKRRTDLTGAFKLDPVYLKHSH  337 (476)
T ss_dssp             HHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSS--CEEEEESCHHHHHGGGC----------
T ss_pred             HHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCc--ceeecccchHHHHHHHhcChhhhcccc
Confidence            99999999999999975443311  11     1489999999999988888  999999876443211        0000


Q ss_pred             Hhc------------CC-CCChhhHHHHhh--ccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhh
Q 021783          150 NAE------------GS-GLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS  214 (307)
Q Consensus       150 ~~~------------~~-~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~  214 (307)
                      ...            ++ .......|+.+.  +.+.+....++..+.++.+.+.+++.+.+. +..+             
T Consensus       338 ~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fe-l~~~-------------  403 (476)
T d1js3a_         338 QGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFE-VCAE-------------  403 (476)
T ss_dssp             --CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEE-ECSC-------------
T ss_pred             ccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeE-EECC-------------
Confidence            000            01 111233344332  345667778888888999999998876542 2111             


Q ss_pred             hccCCCceEEEEeCCH-HHHHHHHhcCCcce
Q 021783          215 QAKGAGSVLSFLTGSL-ALSKHVVETTKYFS  244 (307)
Q Consensus       215 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g  244 (307)
                         ...++++|++.+. +.-+.+.+++...|
T Consensus       404 ---p~l~iV~Fr~~~~d~~n~~l~~~l~~~G  431 (476)
T d1js3a_         404 ---VTLGLVCFRLKGSDGLNEALLERINSAR  431 (476)
T ss_dssp             ---CCSSEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred             ---CceEEEEEEccCChHHHHHHHHHHHhcC
Confidence               1357889998543 33356666665443

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.65  E-value=8.9e-15  Score=124.72  Aligned_cols=185  Identities=17%  Similarity=0.132  Sum_probs=126.1

Q ss_pred             cHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcc--cC-----CcEEEEecCC------ChHHHHhhcC-CCceEEEEe
Q 021783            2 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP--KT-----GVVVKRVNTC------DLDEVASAIG-PWTKLVWVE   67 (307)
Q Consensus         2 aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~--~~-----g~~~~~v~~~------d~~~l~~~l~-~~~~~v~~~   67 (307)
                      |+++++.++++|||+|+..+..+++...-- ....  ..     ..+....+.+      |.+++++... .++++|++.
T Consensus       109 An~av~~all~pgD~im~~~l~~GGHlshg-~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~kPklIi~G  187 (470)
T d1rv3a_         109 ANFAVYTALVEPHGRIMGLDLPDGGHLTHG-FMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAG  187 (470)
T ss_dssp             HHHHHHHHHTCTTCEEEEECGGGTCCGGGC-CBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEEC
T ss_pred             HHHHHHHHhcCCCCeEeeeccccCCccccc-ccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHhhCcceEeec
Confidence            556888899999999998877655544110 0000  11     1344454432      7888888876 588999987


Q ss_pred             CCCCCccccccHHHHHHHHHHcCCEEEEeCccC-----CCCcCCccCCCccEEEeccccccccCCCceeEEEEEcCh---
Q 021783           68 SPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE---  139 (307)
Q Consensus        68 ~~~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~-----~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~---  139 (307)
                      ...+|  ...|.+++.++|++.|+++++|.+|-     .|.++++..+ +|++++|+||+|.||+   +|+++++++   
T Consensus       188 ~S~y~--r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~-aDvvt~tTHKtlrGPr---gGiI~~~~~~~~  261 (470)
T d1rv3a_         188 TSCYS--RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEH-CHVVTTTTHKTLRGCR---AGMIFYRRGVRS  261 (470)
T ss_dssp             CSSCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGT-CSEEEEESSGGGCCCS---CEEEEEECSBCC
T ss_pred             hhhcc--ccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhhe-eeeeeeehhhhccCCc---ceEEEEcccccc
Confidence            65554  67899999999999999999999995     4567788875 6999999999998887   699999864   


Q ss_pred             -----------hHHHHHHHHH-HhcCCCCC-hhhHH----HHhhccccHHHHHHHHHHHHHHHHHHHhcCC
Q 021783          140 -----------RLAKELYFLQ-NAEGSGLA-PFDCW----ICLRGVKTMALRVEKQQDNAQKIAEFLASHP  193 (307)
Q Consensus       140 -----------~~~~~~~~~~-~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~  193 (307)
                                 .+.+.+.... +..-+.+. ...+.    +..+.-..+....++..+|++.|.+.|.++.
T Consensus       262 ~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~G  332 (470)
T d1rv3a_         262 VDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELG  332 (470)
T ss_dssp             -------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence                       2444443332 11111111 11111    1112223567778889999999999998763

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.64  E-value=4.6e-15  Score=126.07  Aligned_cols=261  Identities=17%  Similarity=0.174  Sum_probs=152.5

Q ss_pred             cHHHHHHHhcCCCCeEEEcCCCCcchHHHHh----hhcccCCc--EEEEecC------CChHHHHhhcC-CCceEEEEeC
Q 021783            2 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLS----RVTPKTGV--VVKRVNT------CDLDEVASAIG-PWTKLVWVES   68 (307)
Q Consensus         2 aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~----~~~~~~g~--~~~~v~~------~d~~~l~~~l~-~~~~~v~~~~   68 (307)
                      |.++++.++++|||+|+..+..+.+...--.    ......|.  +....+.      .|.+++++... .++++|++..
T Consensus       105 An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~kPklIi~G~  184 (463)
T d2a7va1         105 ANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGT  184 (463)
T ss_dssp             HHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECC
T ss_pred             HHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhcCCceEEecc
Confidence            5568889999999999977776655541100    00111222  2222221      28888888876 5889999876


Q ss_pred             CCCCccccccHHHHHHHHHHcCCEEEEeCccC-----CCCcCCccCCCccEEEeccccccccCCCceeEEEEEcCh----
Q 021783           69 PTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE----  139 (307)
Q Consensus        69 ~~n~tG~~~~~~~l~~~~~~~~~~li~D~a~~-----~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~----  139 (307)
                      ..+|  ...|.+++.++|++.|+++++|.+|-     .|.++++... +|++++|+||+|.||.   +|+++++++    
T Consensus       185 S~y~--r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~-aDvvt~tTHKTlrGPr---gGiIl~~~~~~~~  258 (463)
T d2a7va1         185 SAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-ADIVTTTTHKTLRGAR---SGLIFYRKGVKAV  258 (463)
T ss_dssp             SSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGT-CSEEEEESSGGGCSCS---CEEEEEECSEEEE
T ss_pred             cccc--cccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhh-hhhhhchhhhhhcCCC---ceEEEEccccccc
Confidence            5554  67899999999999999999999995     5667788875 7999999999998887   799999863    


Q ss_pred             ----------hHHHHHHHHH-HhcCCCCCh-hhHHHH----hhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCC
Q 021783          140 ----------RLAKELYFLQ-NAEGSGLAP-FDCWIC----LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL  203 (307)
Q Consensus       140 ----------~~~~~~~~~~-~~~~~~~~~-~~~~~~----~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l  203 (307)
                                .+.+.+...- +..-+.+.. ..+..+    .+.-..+....++..+|++.|.+.|.++.-  .+ ..+ 
T Consensus       259 ~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~--~v-v~g-  334 (463)
T d2a7va1         259 DPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGY--SL-VSG-  334 (463)
T ss_dssp             ETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC--EE-GGG-
T ss_pred             ccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCC--ee-ecC-
Confidence                      3344443332 111111111 111111    111235677788899999999999987631  11 111 


Q ss_pred             CCCCchHHHhhhccCCCceEEEEeCCH-HHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeE
Q 021783          204 PEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLV  282 (307)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i  282 (307)
                                   .....++.+.+.+. ......-+.|...||.+.--      ..|.-.            ....++-|
T Consensus       335 -------------gTdnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn------~iP~D~------------~~~~~sGi  383 (463)
T d2a7va1         335 -------------GTDNHLVLVDLRPKGLDGARAERVLELVSITANKN------TCPGDR------------SAITPGGL  383 (463)
T ss_dssp             -------------SCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEE------CCTTCC------------CSSSCSEE
T ss_pred             -------------CCCCceeeeeccccCCCHHHHHHHHHhccCccCCc------cCCCCC------------CCCCCCce
Confidence                         11345667776321 12444455555556655421      111100            11124559


Q ss_pred             EEEec------c--CChHHHHHHHHHHHh
Q 021783          283 RISVG------I--EDVNDLISDLDKALR  303 (307)
Q Consensus       283 Ris~~------~--~~~~~~i~~l~~~l~  303 (307)
                      ||...      +  +|+.++.+.+.++|+
T Consensus       384 RiGT~a~TtrG~~e~dm~~iA~~I~~~l~  412 (463)
T d2a7va1         384 RLGAPALTSRQFREDDFRRVVDFIDEGVN  412 (463)
T ss_dssp             EEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             EeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99984      2  677777777777663

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=6.8e-15  Score=123.46  Aligned_cols=256  Identities=16%  Similarity=0.143  Sum_probs=145.5

Q ss_pred             cHHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC----CChHHHHhhcCC------CceEEEEe-CCC
Q 021783            2 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----CDLDEVASAIGP------WTKLVWVE-SPT   70 (307)
Q Consensus         2 aal~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~----~d~~~l~~~l~~------~~~~v~~~-~~~   70 (307)
                      |...++.++.++||.+++..+.|.++.... ......+..+..++.    .|++.+++.+..      ++..++++ .++
T Consensus        61 A~~~al~a~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  139 (343)
T d1m6sa_          61 GNQVSIMAHTQRGDEVILEADSHIFWYEVG-AMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHN  139 (343)
T ss_dssp             HHHHHHHHHCCTTCEEEEETTCHHHHSSTT-HHHHHTCCEEEEECEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBT
T ss_pred             HHHHHHHHHhccCCceeccccccceeeecc-cccccccceeeccccccCccCHHHHHHhhhhhhcccccccccccccccc
Confidence            344677788999999999999886554211 222334555555543    278888888872      44555555 567


Q ss_pred             CCcccccc---HHHHHHHHHHcCCEEEEeCccCCCCcC----C--ccCCCccEEEeccccccccCCCceeEEEEEcChhH
Q 021783           71 NPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----R--PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        71 n~tG~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~----~--~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~  141 (307)
                      ++.|.+.+   +++|.++|+++|+++++|+++..+...    .  ......+..+.+.+|..++..   +|++....+..
T Consensus       140 ~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~  216 (343)
T d1m6sa_         140 RSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPV---GSVVVGDRDFI  216 (343)
T ss_dssp             TTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSS---CEEEEECHHHH
T ss_pred             cCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccc---cccccccHHHH
Confidence            77777654   778888889999999999998633211    0  111234566666666664443   66666664544


Q ss_pred             HHHHHHHHHhcCCC-CChhhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCC
Q 021783          142 AKELYFLQNAEGSG-LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG  220 (307)
Q Consensus       142 ~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  220 (307)
                      .............. ..................+.+...++...+.+.+.+....   ...             . ....
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------~-~~~~  279 (343)
T d1m6sa_         217 ERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYS---VNP-------------E-DVKT  279 (343)
T ss_dssp             HHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCB---CCG-------------G-GCCS
T ss_pred             hhhHhhCcccccccchhHHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHHhccC---ccC-------------C-CCCc
Confidence            33333222222222 2221111111111111112233334444444444432211   000             0 1135


Q ss_pred             ceEEEEeCC-HHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHH
Q 021783          221 SVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLI  295 (307)
Q Consensus       221 ~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i  295 (307)
                      +++++.+++ .....++.+.|.++||.+++.                           +++++|++++.    +|+|+++
T Consensus       280 ~~v~~~~~~~~~~a~~l~~~L~~~Gi~v~~~---------------------------~~~~iRi~~~~~~t~edid~~v  332 (343)
T d1m6sa_         280 NMVILRTDNLKVNAHGFIEALRNSGVLANAV---------------------------SDTEIRLVTHKDVSRNDIEEAL  332 (343)
T ss_dssp             SEEEEECTTSSSCHHHHHHHHHHHTEECEEE---------------------------ETTEEEEECCTTSCHHHHHHHH
T ss_pred             eEEEEEeCCCcccHHHHHHHHHHCCCEEecC---------------------------CCCEEEEECCCCCCHHHHHHHH
Confidence            677787753 234788999999999976531                           13459999875    6778888


Q ss_pred             HHHHHHHhcC
Q 021783          296 SDLDKALRTG  305 (307)
Q Consensus       296 ~~l~~~l~~~  305 (307)
                      +.|+++++++
T Consensus       333 ~~l~~v~~~~  342 (343)
T d1m6sa_         333 NIFEKLFRKF  342 (343)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8888887764

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.53  E-value=2.9e-14  Score=124.26  Aligned_cols=182  Identities=16%  Similarity=0.094  Sum_probs=115.9

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC---------------CChHHHHhhcC----CCceE
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---------------CDLDEVASAIG----PWTKL   63 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------------~d~~~l~~~l~----~~~~~   63 (307)
                      ...++.++++|||+|+.....+ +..    ......|+..+.+..               .|++++++.++    .++.+
T Consensus       103 n~~a~~~l~~~Gd~Vi~~~~f~-~~~----~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~  177 (456)
T d1c7ga_         103 ENLLSQLAIKPGQYVAGNMYFT-TTR----FHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAY  177 (456)
T ss_dssp             HHHHHHHHCCTTEEEEESSCCH-HHH----HHHHHTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEE
T ss_pred             HHHHHHHhcCCCCeEecCcchH-HHH----HHHHHcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCcccee
Confidence            3367777899999999766533 333    223456777665532               28899999886    34568


Q ss_pred             EEEeCCCCCcccc-c---cHHHHHHHHHHcCCEEEEeCccCCCC----------cC--Ccc------CCCccEEEecccc
Q 021783           64 VWVESPTNPRQQI-C---DIRKIAEMAHAHGALLLVDNSIMSPV----------LS--RPL------ELGADIVMHSATK  121 (307)
Q Consensus        64 v~~~~~~n~tG~~-~---~~~~l~~~~~~~~~~li~D~a~~~~~----------~~--~~~------~~~~d~~~~s~~K  121 (307)
                      +++++++|+.|-. .   ++++|.++|++||+.+++|+++..+.          ..  ...      ...+|++++|++|
T Consensus       178 i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K  257 (456)
T d1c7ga_         178 ICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKK  257 (456)
T ss_dssp             EEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTT
T ss_pred             EEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccc
Confidence            8899998887633 3   58899999999999999999975321          00  110      0137999999999


Q ss_pred             ccccCCCceeEEEEEcChhHHHHHHHHHHhcCC-----CCChhhHHHHhhccccH--HHHHHHHHHHHHHHHHHHhcC
Q 021783          122 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS-----GLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASH  192 (307)
Q Consensus       122 ~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~  192 (307)
                      .++++.   +|+++++++.+.+..+......+.     ............++...  ....++..++++++.+.|++.
T Consensus       258 ~~~~~~---GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~L~~~  332 (456)
T d1c7ga_         258 DCLVNI---GGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREA  332 (456)
T ss_dssp             TTCCSS---CEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccc---eeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Confidence            996543   799999988877666544322221     12222222222222111  223445566777888888765

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.52  E-value=2.5e-14  Score=121.57  Aligned_cols=250  Identities=10%  Similarity=0.003  Sum_probs=145.4

Q ss_pred             HHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccH
Q 021783            5 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDI   79 (307)
Q Consensus         5 ~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~   79 (307)
                      +++..+.++|+++++...  ......|...++..|..++.++.+     +++++++.+...+ .+   +.+|.||.+.+.
T Consensus        82 a~~~~l~~~~~~~l~~~~--g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~v~~~tg~~~~~  155 (361)
T d2c0ra1          82 MIPMNFLKEGQTANYVMT--GSWASKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQDN-AA---YLHLTSNETIEG  155 (361)
T ss_dssp             HHHHHHCCTTCEEEEEEC--SHHHHHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGCCCCTT-EE---EEEEESEETTTT
T ss_pred             HHHhccccCCCceEEEee--chhhhhhhhhhhhcCceeeeeccccccccchhhhhhhcccCc-ce---EEEEecccceec
Confidence            344457788998886654  345555678888999998888763     6667777666443 22   345678999999


Q ss_pred             HHHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHH----------HHHH
Q 021783           80 RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE----------LYFL  148 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~----------~~~~  148 (307)
                      +++.++|+++|+++++|++++.|..+ +..++  |+.+.|++|.++++++  +++++..+. ..+.          ....
T Consensus       156 ~~i~~~~~~~~al~~vDavss~g~~~id~~~~--di~~~s~~k~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~  230 (361)
T d2c0ra1         156 AQFKAFPDTGSVPLIGDMSSDILSRPFDLNQF--GLVYAGAQKNLGPSGV--TVVIVREDL-VAESPKHLPTMLRYDTYV  230 (361)
T ss_dssp             EECSSCCCCTTSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTCCSSC--EEEEEEGGG-SSSCCTTSCGGGCHHHHH
T ss_pred             ceEEEeeccCCceEEEEeeccccccccccccc--eeEEEecccccccccC--cEEEEEhHH-hhhCcccccccccccccc
Confidence            99999999999999999999999987 66665  5566778999965554  444444332 2111          1111


Q ss_pred             HHhcC-CCCChhhHHHHhh------ccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCc
Q 021783          149 QNAEG-SGLAPFDCWICLR------GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS  221 (307)
Q Consensus       149 ~~~~~-~~~~~~~~~~~~~------~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (307)
                      ..... .............      ..........+.......+............. ..    .       +..+ ...
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~-------~~~r-S~~  297 (361)
T d2c0ra1         231 KNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRG-CV----D-------VDSR-SDM  297 (361)
T ss_dssp             HTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEE-SS----C-------GGGB-CSS
T ss_pred             ccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhccccccc-CC----C-------hhhc-cce
Confidence            11111 1111111111111      11122223333344444444444433221111 10    0       0111 135


Q ss_pred             eEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHHHHH
Q 021783          222 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA  301 (307)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l~~~  301 (307)
                      .++|.+++..+..++.+.|+++||.++.|..   .                  .    +.+|||+......+.++.|.++
T Consensus       298 ~~~~~~~~~~~~~~~~~~L~~~GI~~~~G~~---~------------------~----g~~RIs~~~~~~~edv~~Lv~~  352 (361)
T d2c0ra1         298 NITFRLASEELEKEFVKASEQEGFVGLKGHR---S------------------V----GGLRASIYNAVPYESCEALVQF  352 (361)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTEESCBCCT---T------------------T----CSEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcccHHHHHHHHHHCCCEEecCCC---c------------------C----CeEEEEecCCCCHHHHHHHHHH
Confidence            6788887666688999999999999888742   0                  1    1299999764444444444444


Q ss_pred             Hh
Q 021783          302 LR  303 (307)
Q Consensus       302 l~  303 (307)
                      |+
T Consensus       353 l~  354 (361)
T d2c0ra1         353 ME  354 (361)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=4.1e-14  Score=119.85  Aligned_cols=251  Identities=11%  Similarity=-0.080  Sum_probs=150.2

Q ss_pred             HHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            6 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         6 ~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      ++..+.++++.+++....+...  .+...++..|..++.....     +.+++++.+..+++++++++.+|.||...+.+
T Consensus        81 ~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~~~  158 (360)
T d1bjna_          81 VPLNILGDKTTADYVDAGYWAA--SAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAID  158 (360)
T ss_dssp             HHHHHCTTCCEEEEEESSHHHH--HHHHHHTTTSEEEEEECEEEETTEEEECCGGGCCCCSSCSCEEECSEETTTTEECC
T ss_pred             hhhcccccccccceecccchhh--hhHHHHhhcCccceeeccccCCCcchhhhhhhhccCCceeEEEecccccccCcccc
Confidence            3444678888888876655433  4556778888877666542     45666677778889999999999999998877


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCcCCccCCCccEEEeccccccccCCCceeEEEEEcChhHHHH---------HHHHHHh
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE---------LYFLQNA  151 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~---------~~~~~~~  151 (307)
                      ++.  ++.+++.+++|.+++.+..+ ...++.|+++.|++|++++|+|  +|+++.++......         .......
T Consensus       159 ~i~--~~~~~~~v~vDa~~~~~~~~-vd~~~~dv~~~ss~k~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (360)
T d1bjna_         159 ETP--DFGADVVVAADFSSTILSRP-IDVSRYGVIYAGAQKNIGPAGL--TIVIVREDLLGKANIACPSILDYSILNDNG  233 (360)
T ss_dssp             CCC--CCCTTCCEEEECTTTTTSSC-CCGGGCSEEEEETTTTTSSTTC--EEEEEEGGGCSCCCTTSCGGGCHHHHHHTT
T ss_pred             cee--cccccceeeeeeecccccee-eeeccceeEEEEcccccccCCC--ceeEeeehhhhhccccCCcchhhHHHHhhh
Confidence            664  46779999999999888766 3334689999999999988877  67766664422110         1111111


Q ss_pred             cCC-CCCh-hhHHHHhhc-----cccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEE
Q 021783          152 EGS-GLAP-FDCWICLRG-----VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  224 (307)
Q Consensus       152 ~~~-~~~~-~~~~~~~~~-----l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  224 (307)
                      ... .... .........     ........++....+....+.+......   ....   .        +......+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~--------~~~rs~~v~~  299 (360)
T d1bjna_         234 SMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFY---RNDV---A--------KRNRSRMNVP  299 (360)
T ss_dssp             TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSE---ECCB---C--------GGGBCSSEEE
T ss_pred             hhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccc---cccC---C--------cccccceEEE
Confidence            111 1111 111111111     1122233333444444444444433211   1110   0        1112346788


Q ss_pred             EEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccC----ChHHHHHHHHH
Q 021783          225 FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE----DVNDLISDLDK  300 (307)
Q Consensus       225 ~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~----~~~~~i~~l~~  300 (307)
                      |.+++....+.+.+.++++||.++.|..   .                      -+.+|||++..    |++++++.|++
T Consensus       300 f~~~~~~~~~~~~~~l~~~Gi~~~~G~~---~----------------------~g~~Ris~~~~~t~edV~~li~~l~e  354 (360)
T d1bjna_         300 FQLADSALDKLFLEESFAAGLHALKGHR---V----------------------VGGMRASIYNAMPLEGVKALTDFMVE  354 (360)
T ss_dssp             EEESSGGGHHHHHHHHHHTTEECCBCCT---T----------------------TCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEcCCcccHHHHHHHHHHCCCEeecCCC---c----------------------cCeEEEEecCCCCHHHHHHHHHHHHH
Confidence            9997666678899999999998887742   0                      12299999764    45555555555


Q ss_pred             HH
Q 021783          301 AL  302 (307)
Q Consensus       301 ~l  302 (307)
                      ..
T Consensus       355 ~~  356 (360)
T d1bjna_         355 FE  356 (360)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.49  E-value=3.8e-13  Score=115.12  Aligned_cols=249  Identities=17%  Similarity=0.126  Sum_probs=160.4

Q ss_pred             CCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCC
Q 021783           12 GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA   91 (307)
Q Consensus        12 ~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~~~~   91 (307)
                      ...++++++...|+++.......++..|.+++.+|.++.......+++++.++++++|++ .|.+.+++++.+++|+.|.
T Consensus       148 ~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~~~~~~~~~~~Aavmi~~Pnt-~G~~ed~~~i~~~~h~~G~  226 (437)
T d1wyua1         148 TGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTPLPEVGEEVGAVVVQNPNF-LGALEDLGPFAEAAHGAGA  226 (437)
T ss_dssp             HTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCCCCCCCTTEEEEEEESSCT-TSBCCCHHHHHHHHHHTTC
T ss_pred             hcccccccccccChHHhhhhhhhcccceeeEEeeecccccchhhhhccceeEEEEccccc-cccccchHHHHHHhhhccc
Confidence            457789999999999888888888999999999998654443344678999999999976 7999999999999999999


Q ss_pred             EEEEeCccC-CCCcCCccCCCccEEEecccc-----ccccCCCceeEEEEEcChhHHHHHH-------------------
Q 021783           92 LLLVDNSIM-SPVLSRPLELGADIVMHSATK-----FIAGHSDVMAGVLAVKGERLAKELY-------------------  146 (307)
Q Consensus        92 ~li~D~a~~-~~~~~~~~~~~~d~~~~s~~K-----~~~g~~g~~~G~~~~~~~~~~~~~~-------------------  146 (307)
                      +++.|..-. .+.+..+.++|+|+++++.++     .++||.   +|++.++++.......                   
T Consensus       227 l~~~~ad~~al~~l~~Pg~~GaDi~~g~~q~fg~p~g~GGP~---~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~l  303 (437)
T d1wyua1         227 LFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGLPMGFGGPH---FGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTL  303 (437)
T ss_dssp             EEEEECCTTGGGTBCCHHHHTCSEEEEECTTTTCCCGGGCSC---CEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECC
T ss_pred             eEEeeechhhhhccccccccccceEeeccceeccccCCCcCc---cccccccchhhccccccccccccccCCcccceeec
Confidence            888876643 345568889999999999433     344443   6999998764322110                   


Q ss_pred             -----HHHHhcC----CCCCh-----hhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHH
Q 021783          147 -----FLQNAEG----SGLAP-----FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH  212 (307)
Q Consensus       147 -----~~~~~~~----~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~  212 (307)
                           ...+.-+    ++...     ...|+...|-+.++..-+....++.++.+.|.+.+++. ...+.    +     
T Consensus       304 qtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~-~~~~~----~-----  373 (437)
T d1wyua1         304 QAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVR-PFTPK----P-----  373 (437)
T ss_dssp             GGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCE-ECSCS----S-----
T ss_pred             ccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCee-ccCCC----C-----
Confidence                 1111111    11111     12334444445566666677888888888887665432 11111    0     


Q ss_pred             hhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChH
Q 021783          213 YSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVN  292 (307)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~  292 (307)
                            ...-+.+.++  ..+.++.++|..+|+-..  .    ...|.                ..++.+.+++.-.+..
T Consensus       374 ------~f~ef~v~~~--~~~~~i~k~L~d~G~~~~--~----~~~~~----------------~~~~~lli~~TE~~tk  423 (437)
T d1wyua1         374 ------FFNEFALALP--KDPEAVRRALAERGFHGA--T----PVPRE----------------YGENLALFAATELHEE  423 (437)
T ss_dssp             ------BCSEEEEECS--SCHHHHHHHHHHTTCCCC--E----ECCTT----------------SCSSEEEEECCTTCCH
T ss_pred             ------eeeEEEEECC--CCHHHHHHHHHhCCCCCC--c----ccccC----------------CCCCeEEEecCCCCCH
Confidence                  1112233332  236677777777766211  1    10110                1256799999876667


Q ss_pred             HHHHHHHHHHhc
Q 021783          293 DLISDLDKALRT  304 (307)
Q Consensus       293 ~~i~~l~~~l~~  304 (307)
                      +.++.|.++|++
T Consensus       424 eeiD~~v~al~e  435 (437)
T d1wyua1         424 EDLLALREALKE  435 (437)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777777766654

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.43  E-value=7.4e-13  Score=113.72  Aligned_cols=215  Identities=12%  Similarity=0.143  Sum_probs=132.9

Q ss_pred             EEEecCCChHHHHhhcC-CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-C---CCcCCccCCC-
Q 021783           42 VKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-S---PVLSRPLELG-  111 (307)
Q Consensus        42 ~~~v~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~---~~~~~~~~~~-  111 (307)
                      +..+|.++.+.++..+. +++.+|+++..+...|...+    +++|.++|++||+++|+||++. .   |.......+| 
T Consensus       167 ~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv  246 (404)
T d1z7da1         167 FSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNV  246 (404)
T ss_dssp             EEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC
T ss_pred             ccccccchHHHHHHHhcCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCC
Confidence            44456678888888886 57899999988888888876    9999999999999999999995 2   2222233334 


Q ss_pred             -ccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHH----HH
Q 021783          112 -ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNA----QK  184 (307)
Q Consensus       112 -~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~----~~  184 (307)
                       .|++  +++|.+++ ....+|.++++++ +.+.+............+..+..+.+.++.+..  ..+...+..    +.
T Consensus       247 ~PDiv--t~gK~l~g-G~~p~~~v~~~~~-i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~  322 (404)
T d1z7da1         247 KPDVI--LLGKALSG-GHYPISAVLANDD-IMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLEN  322 (404)
T ss_dssp             CCSEE--EECGGGGT-TSSCCEEEEECHH-HHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             CCCEE--EEcccccC-CCCCcccccchHH-HHccCCCCCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHHH
Confidence             4666  68999954 2244888888855 333222211112223345666666665543322  111222222    22


Q ss_pred             HHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCH-HHHHHHHhcCCcceeecCCCCccceeecccccC
Q 021783          185 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMS  263 (307)
Q Consensus       185 l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~  263 (307)
                      +.+.+++++.+..                  .++.|.++.+.+.+. .....+...+.++|+.+....            
T Consensus       323 l~~~~~~~~~v~~------------------vrg~Gl~~~i~~~~~~~~~~~~~~~l~~~Gl~~~~~~------------  372 (404)
T d1z7da1         323 LKRELKDSKIVRD------------------VRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDVH------------  372 (404)
T ss_dssp             HHHHHTTCTTEEE------------------EEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEET------------
T ss_pred             HHHHHhcCCCeEE------------------EEeeCcEEEEEEcCCcccHHHHHHHHHhCCeEEecCC------------
Confidence            3333333332211                  144677888888543 335567777777888664311            


Q ss_pred             CCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhcC
Q 021783          264 HASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  305 (307)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~  305 (307)
                                     ++.||+++++    +++++.++.|.++|+++
T Consensus       373 ---------------~~~ir~~Ppl~it~~~id~~~~~l~~alk~~  403 (404)
T d1z7da1         373 ---------------DKTIRLTPPLCITKEQLDECTEIIVKTVKFF  403 (404)
T ss_dssp             ---------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------CCEEEEECCcCCCHHHHHHHHHHHHHHHHhh
Confidence                           3348888654    78888888888888754

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.4e-13  Score=116.63  Aligned_cols=216  Identities=14%  Similarity=0.163  Sum_probs=138.6

Q ss_pred             cEEEEecCCChHHHHhhcC-CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-CC---CcCCccCC
Q 021783           40 VVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SP---VLSRPLEL  110 (307)
Q Consensus        40 ~~~~~v~~~d~~~l~~~l~-~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~~---~~~~~~~~  110 (307)
                      -.+..+|.+|++++++.+. ++..+|+++......|...+    +++|.++|++||+++|+||++. .|   .......+
T Consensus       167 ~~~~~~p~~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~  246 (404)
T d2byla1         167 PGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYE  246 (404)
T ss_dssp             TTEEEECTTCHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGG
T ss_pred             CCeeEecccCHHHHHHhcCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhc
Confidence            3466778899999999997 57888999988888887765    9999999999999999999985 22   22233334


Q ss_pred             C--ccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHH----
Q 021783          111 G--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK----  184 (307)
Q Consensus       111 ~--~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----  184 (307)
                      |  .|++  +++|.+++ ....+|.++++++ +.+.+............+..+..+.+.++.++.  +.+.++.+.    
T Consensus       247 gv~PDi~--~~gK~l~g-G~~p~~av~~~~~-i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~--~~l~~~~~~~g~~  320 (404)
T d2byla1         247 NVRPDIV--LLGKALSG-GLYPVSAVLCDDD-IMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEE--ENLAENADKLGII  320 (404)
T ss_dssp             TCCCSEE--EECGGGGT-TSSCCEEEEECHH-HHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHH
T ss_pred             CCCCCEE--EECchhhC-CCccceeeeechh-hhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHh--cCchhhhhHhhHH
Confidence            4  4766  68999854 2245888888744 433332222222223445667776676665533  223334444    


Q ss_pred             HHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCC--HHHHHHHHhcCCcceeecCCCCccceeeccccc
Q 021783          185 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISMPCFM  262 (307)
Q Consensus       185 l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~  262 (307)
                      +.+.+++...      +.          ....++.|.+..+.+.+  .....++.+++.++|+.+...            
T Consensus       321 l~~~l~~l~~------~~----------i~~vRg~Gl~~~i~~~~~~~~~~~~~~~~l~~~Gvl~~~~------------  372 (404)
T d2byla1         321 LRNELMKLPS------DV----------VTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPT------------  372 (404)
T ss_dssp             HHHHHHTSCT------TT----------EEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECEEE------------
T ss_pred             HHHHHHhhcc------cc----------ceeeeecccEEEEEEecCCchhHHHHHHHHHhCCeEEecC------------
Confidence            4444443210      10          01124567788887732  234667888888888866431            


Q ss_pred             CCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          263 SHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                                     ..+.||+++.+    +++|+.++.|.++|++
T Consensus       373 ---------------~~~~i~l~PpL~it~~~id~~~~~l~~al~~  403 (404)
T d2byla1         373 ---------------HGDIIRFAPPLVIKEDELRESIEIINKTILS  403 (404)
T ss_dssp             ---------------ETTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             ---------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence                           12348888754    7888888888888764

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.41  E-value=8.8e-11  Score=97.74  Aligned_cols=251  Identities=14%  Similarity=0.051  Sum_probs=138.8

Q ss_pred             HHHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-----CChHHHHhhcCCC------ceEE-EEeCCC
Q 021783            3 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGPW------TKLV-WVESPT   70 (307)
Q Consensus         3 al~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~------~~~v-~~~~~~   70 (307)
                      .+.++...+++++.+++....|.+..... ......+..+..++.     .+++++++.+...      +..+ +...+.
T Consensus        67 n~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  145 (345)
T d1v72a1          67 NALCLSAMTPPWGNIYCHPASHINNDECG-APEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQA  145 (345)
T ss_dssp             HHHHHHTSCCTTEEEEECTTSHHHHSSTT-HHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESS
T ss_pred             HHHHHHHHHhcCCccccccccceeeechh-hHHHhcCcccccccccccccccHHHhhhhhcccccccccccceeeeeecc
Confidence            34566667888899888888776554221 122334555555543     3888998888632      2333 333455


Q ss_pred             CCccccc---cHHHHHHHHHHcCCEEEEeCccCCCCc-------C-CccCCCccEEEeccccccccCCCceeEEEEEcCh
Q 021783           71 NPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVL-------S-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE  139 (307)
Q Consensus        71 n~tG~~~---~~~~l~~~~~~~~~~li~D~a~~~~~~-------~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~  139 (307)
                      |+.|...   +++++.++|++||+++++|+++..+..       . .......+..+.+.+|...  ..  .+.......
T Consensus       146 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~  221 (345)
T d1v72a1         146 TEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGV--LA--AEAIVLFNT  221 (345)
T ss_dssp             CTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTC--SS--CEEEEESSG
T ss_pred             ccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCcccccc--cc--ccccccchh
Confidence            5555543   588899999999999999999863211       1 1222234566666666542  22  344444444


Q ss_pred             hHHHHHHHHHHhcCCC--CChhhHHHHhhcc--ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhh
Q 021783          140 RLAKELYFLQNAEGSG--LAPFDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ  215 (307)
Q Consensus       140 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  215 (307)
                      .............+..  .....+......+  ..............+.+.+.+.+.+.+ .+..+              
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~p--------------  286 (345)
T d1v72a1         222 SLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGV-EVLGG--------------  286 (345)
T ss_dssp             GGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTE-EEESC--------------
T ss_pred             hhhhhccccccccccccchhhHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCc-EeccC--------------
Confidence            4433333322222222  2222222222222  222333344445555666666665543 11111              


Q ss_pred             ccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHH
Q 021783          216 AKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLI  295 (307)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i  295 (307)
                        ..++++.+.+++.     ..+.|.++|+.+..+..                         +++.+|++++..++++.+
T Consensus       287 --~~~niv~~~~~~~-----~~~~L~~~gi~v~~~~~-------------------------~~~~lR~~~~~~~T~edi  334 (345)
T d1v72a1         287 --TEANILFCRLDSA-----MIDALLKAGFGFYHDRW-------------------------GPNVVRFVTSFATTAEDV  334 (345)
T ss_dssp             --CCSSEEEEEECHH-----HHHHHHHTTCBCBCSSS-------------------------STTEEEEECCTTCCHHHH
T ss_pred             --CCccEEEEEcCHH-----HHHHHHHcCCCccccCC-------------------------CCCEEEEECCCCCCHHHH
Confidence              1356777777632     33445556776643221                         356799999998888888


Q ss_pred             HHHHHHHhcC
Q 021783          296 SDLDKALRTG  305 (307)
Q Consensus       296 ~~l~~~l~~~  305 (307)
                      +.+.++|++.
T Consensus       335 d~~le~lr~a  344 (345)
T d1v72a1         335 DHLLNQVRLA  344 (345)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            8888888754

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.41  E-value=8.9e-14  Score=117.93  Aligned_cols=250  Identities=10%  Similarity=-0.081  Sum_probs=139.0

Q ss_pred             HHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHH
Q 021783            6 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIR   80 (307)
Q Consensus         6 ~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~   80 (307)
                      +...+.++++.|++....+.+..  +...++..+...+.....     ++++++...... .   +++.+|.||.+.|++
T Consensus        83 ~~~~~~~~~~~v~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~tg~~~~~~  156 (360)
T d1w23a_          83 LPMNLLTKGTIGNYVLTGSWSEK--ALKEAKLLGETHIAASTKANSYQSIPDFSEFQLNE-N---DAYLHITSNNTIYGT  156 (360)
T ss_dssp             HHHHHCCTTCEEEEEECSHHHHH--HHHHHHTTSEEEEEEECGGGTSCSCCCGGGCCCCT-T---EEEEEEESEETTTTE
T ss_pred             HHhhhcccCcccceeeccchhhh--hHHHHHHhhhcceeeccccccccchhhhhhccccc-c---cceeEecCCccccce
Confidence            34446778888887766554443  334566677666655542     233333333222 2   334567789999999


Q ss_pred             HHHHHHHHcCCEEEEeCccCCCCcC-CccCCCccEEEeccccccccCCCceeEEEEEcChhHHHH---------HHHHHH
Q 021783           81 KIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE---------LYFLQN  150 (307)
Q Consensus        81 ~l~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~---------~~~~~~  150 (307)
                      +|.++|+++|+++++|++++.|+.+ +..++++|+++++-+|++  +++  +|+++.++......         ......
T Consensus       157 ~i~~~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (360)
T d1w23a_         157 QYQNFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGP--SGV--TVVIVKKDLLNTKVEQVPTMLQYATHIKS  232 (360)
T ss_dssp             ECSSCCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSC--TTC--EEEEEEHHHHCSCCTTCCGGGCHHHHHHT
T ss_pred             eeeeccccceeeEEeeccccccccccccccccceEEeecccccc--CCc--ceeeEechhhhcccccCCcchhhhhhhhh
Confidence            9999999999999999999999988 888888888877766654  344  56665543221100         001111


Q ss_pred             -hcCCCCChhhHHHHhhcc------ccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceE
Q 021783          151 -AEGSGLAPFDCWICLRGV------KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  223 (307)
Q Consensus       151 -~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  223 (307)
                       ..................      .......+...................... ..    .        +......++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~--------~~~rS~~vv  299 (360)
T d1w23a_         233 DSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVG-HA----E--------KGSRSLMNV  299 (360)
T ss_dssp             TTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEE-SS----C--------GGGBCSSEE
T ss_pred             hhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhccccccc-CC----C--------hhhcceeEE
Confidence             111111111111111110      111111122222222333333322211111 00    0        111124578


Q ss_pred             EEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHH
Q 021783          224 SFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLD  299 (307)
Q Consensus       224 ~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~  299 (307)
                      +|.+++....+.+...+.++||.++.|...                     .    +.+|+|+..    +|++.+++.++
T Consensus       300 sf~i~~~~~~~~~~~~l~~~GI~~~~G~~~---------------------~----ggiRiS~~~~~t~e~V~~Li~~~~  354 (360)
T d1w23a_         300 TFNLRNEELNQQFLAKAKEQGFVGLNGHRS---------------------V----GGCRASIYNAVPIDACIALRELMI  354 (360)
T ss_dssp             EEECSSHHHHHHHHHHHHHTTEESCBCCTT---------------------T----CSEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEcCCCccHHHHHHHHHHCCCeeeeCCCc---------------------c----CcEEEEeeCCCCHHHHHHHHHHHH
Confidence            999987776889999999999998887531                     0    129999843    56666666666


Q ss_pred             HHHh
Q 021783          300 KALR  303 (307)
Q Consensus       300 ~~l~  303 (307)
                      +..+
T Consensus       355 ~~~~  358 (360)
T d1w23a_         355 QFKE  358 (360)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6554

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.38  E-value=8.8e-12  Score=106.14  Aligned_cols=241  Identities=17%  Similarity=0.158  Sum_probs=143.4

Q ss_pred             CCCeEEEcCCCCcchHHHHhh---------hcccCCcEEEEecCCChHHHHhhcCCCceEEEEeCCCCCcccccc----H
Q 021783           13 TGEEIVAGDDLYGGTDRLLSR---------VTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD----I   79 (307)
Q Consensus        13 ~gd~Vlv~~~~~~~~~~~~~~---------~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~----~   79 (307)
                      ...+|+.....|.+.......         .....-.++..+|.+|.+.+++.+++++.+|+++..+...|...+    +
T Consensus       121 ~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~d~~~l~~~~~~~iAavi~EPi~g~~G~~~~~~~~l  200 (387)
T d1vefa1         121 GRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFL  200 (387)
T ss_dssp             SCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHH
T ss_pred             ccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCCCHHHHHHhcCCCeEEEEEECCCCCCCCccCCHHHH
Confidence            356777777766554322111         111122456778889999999999999999999988777787765    9


Q ss_pred             HHHHHHHHHcCCEEEEeCccC-C---CCcCCccCCCc--cEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHhcC
Q 021783           80 RKIAEMAHAHGALLLVDNSIM-S---PVLSRPLELGA--DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  153 (307)
Q Consensus        80 ~~l~~~~~~~~~~li~D~a~~-~---~~~~~~~~~~~--d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~~~  153 (307)
                      ++|.++|++||+++|.||++. .   |.......+|.  |+++  ++|.+++  |...+.+..+++ ....+........
T Consensus       201 ~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~--~gK~l~g--G~~~~~~~~~~~-~~~~~~~~~~g~T  275 (387)
T d1vefa1         201 RAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILT--LAKALGG--GVPLGVAVMREE-VARSMPKGGHGTT  275 (387)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEE--ECGGGGT--TSSCEEEEEEHH-HHHTSCTTSSCCS
T ss_pred             HHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCceee--ecccCCC--Ccccccccccee-eeeccccCCcccc
Confidence            999999999999999999985 3   32222333344  6655  8898853  445677777644 3222211111122


Q ss_pred             CCCChhhHHHHhhccccHHHH--HHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHH
Q 021783          154 SGLAPFDCWICLRGVKTMALR--VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA  231 (307)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (307)
                      ....+..+..+.+.++.+...  .++..+..+.+.+.++....      +      .+    ...++.|.++.+.+++..
T Consensus       276 ~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~~L~~l~~------~------~v----~~vrg~Gl~~~ie~~~~~  339 (387)
T d1vefa1         276 FGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPS------P------KI----REVRGMGLMVGLELKEKA  339 (387)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCC------T------TE----EEEEEETTEEEEEESSCS
T ss_pred             CCCCcchhhhcccchhhcccccccchHhhhhHHHHHHHHhcCC------C------ce----EEEeecceEEEEEEeCCc
Confidence            233566677766666655331  33334444445555543311      1      10    122456788888886543


Q ss_pred             HHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHH
Q 021783          232 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKAL  302 (307)
Q Consensus       232 ~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l  302 (307)
                       ...+.+.+..+|+.+...                           ..+.+|+++++    +++++.++.|+++|
T Consensus       340 -~~~~~~~~~~~g~l~~~~---------------------------g~~~ir~~Ppl~it~~~ld~~~~~i~~aL  386 (387)
T d1vefa1         340 -APYIARLEKEHRVLALQA---------------------------GPTVIRFLPPLVIEKEDLERVVEAVRAVL  386 (387)
T ss_dssp             -HHHHHHHHHHHCEECEES---------------------------STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHCCCeEEec---------------------------CCCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence             445555555566543221                           12348888765    55666666666554

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=7.3e-13  Score=116.21  Aligned_cols=185  Identities=15%  Similarity=0.097  Sum_probs=113.3

Q ss_pred             cHHHHHHHhcCCCCe---------EEEcCCCCcchHHHHhhhcccCCcEEEEecCC---------------ChHHHHhhc
Q 021783            2 AALAAVTHLLGTGEE---------IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---------------DLDEVASAI   57 (307)
Q Consensus         2 aal~~~~~~~~~gd~---------Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---------------d~~~l~~~l   57 (307)
                      |...++.+++++||+         +..+...|....    ......|+.++.++.+               |++++++.+
T Consensus       101 A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i  176 (467)
T d2v1pa1         101 AEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQ----GHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGI  176 (467)
T ss_dssp             THHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHH----HHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHH
T ss_pred             HHHHHHHHHhhccceEecCCCCcEEEEecccccccH----HHHHHcCCeeeecccccccccccccccccCCCHHHHHHHH
Confidence            333555555555554         444444443443    4456778888877642               688898887


Q ss_pred             C----CCceEEEEeCCCCCcccc-c---cHHHHHHHHHHcCCEEEEeCccCCCCc-------CCcc-----------CCC
Q 021783           58 G----PWTKLVWVESPTNPRQQI-C---DIRKIAEMAHAHGALLLVDNSIMSPVL-------SRPL-----------ELG  111 (307)
Q Consensus        58 ~----~~~~~v~~~~~~n~tG~~-~---~~~~l~~~~~~~~~~li~D~a~~~~~~-------~~~~-----------~~~  111 (307)
                      .    +.+++++++..+|..|.. +   ++++|.++|++||+++|+|+++..+..       ....           ...
T Consensus       177 ~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  256 (467)
T d2v1pa1         177 EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKY  256 (467)
T ss_dssp             HHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGG
T ss_pred             hhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhccc
Confidence            6    356788888888766543 3   589999999999999999999853210       0000           113


Q ss_pred             ccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHHh----cCC----CCChhhHHHHhhc--cccHHHHHHHHHHH
Q 021783          112 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA----EGS----GLAPFDCWICLRG--VKTMALRVEKQQDN  181 (307)
Q Consensus       112 ~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~--l~~~~~~~~~~~~~  181 (307)
                      .|++++|.+|.++++.   +|++..+++.+..........    .+.    .............  ........++..++
T Consensus       257 ~d~~s~s~~K~~~~~~---gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  333 (467)
T d2v1pa1         257 ADMLAMSAKKDAMVPM---GGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQ  333 (467)
T ss_dssp             CSEEEEESSSTTCCSS---CEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCEEEecCCCCCCCCC---ceeEEecchhhhhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhhHHHHHHHHHH
Confidence            7999999999996654   788888877665544332221    111    1212111111111  11123455666778


Q ss_pred             HHHHHHHHhcCC
Q 021783          182 AQKIAEFLASHP  193 (307)
Q Consensus       182 ~~~l~~~l~~~~  193 (307)
                      ++.+.+.|++..
T Consensus       334 ~~~l~~~L~~~~  345 (467)
T d2v1pa1         334 VQYLVDGLEEIG  345 (467)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcC
Confidence            888888888764

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=3.6e-11  Score=103.77  Aligned_cols=200  Identities=15%  Similarity=0.202  Sum_probs=123.4

Q ss_pred             CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccCC-CC---cCCccCCC--ccEEEeccccccccCCC
Q 021783           59 PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PV---LSRPLELG--ADIVMHSATKFIAGHSD  128 (307)
Q Consensus        59 ~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~~-~~---~~~~~~~~--~d~~~~s~~K~~~g~~g  128 (307)
                      .++.+|+++..+...|...+    +++|.++|++||+++|.||++.. |.   ......+|  .|+++  ++|.+++  |
T Consensus       197 ~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~--~gK~l~g--G  272 (425)
T d1sffa_         197 EDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTT--FAKSIAG--G  272 (425)
T ss_dssp             GGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEE--ECGGGGT--S
T ss_pred             cceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCcccee--cccccCC--C
Confidence            46789999988877787653    99999999999999999999873 32   22223344  46555  8999964  4


Q ss_pred             ceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHH--HHHHHHHHHHHHHHH----HhcCCCccEEecCC
Q 021783          129 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEF----LASHPRVKKVNYAG  202 (307)
Q Consensus       129 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~----l~~~~~~~~~~~~~  202 (307)
                      ...|.++++++ +.+.+............+..+..+.+.|+.+.+  ..+......+++.+.    .++++.+..     
T Consensus       273 ~P~~av~~~~~-i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~-----  346 (425)
T d1sffa_         273 FPLAGVTGRAE-VMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGD-----  346 (425)
T ss_dssp             SCCEEEEEEHH-HHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEE-----
T ss_pred             cceEEEEEcHH-HHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHhhCCceEE-----
Confidence            55888888855 433332222222234445677777776665532  122222222233322    233332211     


Q ss_pred             CCCCCchHHHhhhccCCCceEEEEeC--------CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHh
Q 021783          203 LPEHPGHELHYSQAKGAGSVLSFLTG--------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA  274 (307)
Q Consensus       203 l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~  274 (307)
                                   .++.|.++.+.+.        +.+....+.+++.++|+.+..+..                      
T Consensus       347 -------------vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~----------------------  391 (425)
T d1sffa_         347 -------------VRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGP----------------------  391 (425)
T ss_dssp             -------------EEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEEST----------------------
T ss_pred             -------------EEccccEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccCC----------------------
Confidence                         1345777777762        234467788888888886654221                      


Q ss_pred             cCCCCCeEEEEecc----CChHHHHHHHHHHHhcCC
Q 021783          275 RGLTEDLVRISVGI----EDVNDLISDLDKALRTGP  306 (307)
Q Consensus       275 ~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~~~  306 (307)
                         ..+.+|+++++    +++++.++.|.++++++.
T Consensus       392 ---~~n~i~~~PpL~it~~eid~~l~~l~~al~eik  424 (425)
T d1sffa_         392 ---YYNVLRILVPLTIEDAQIRQGLEIISQCFDEAK  424 (425)
T ss_dssp             ---TSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             ---CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence               23458888765    678888888888887653

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=4.2e-11  Score=103.19  Aligned_cols=211  Identities=13%  Similarity=0.081  Sum_probs=127.8

Q ss_pred             ChHHHHhhcC---CCceEEEEeCCC-CCccccc-c---HHHHHHHHHHcCCEEEEeCccC-C---CCcCCccCCC--ccE
Q 021783           49 DLDEVASAIG---PWTKLVWVESPT-NPRQQIC-D---IRKIAEMAHAHGALLLVDNSIM-S---PVLSRPLELG--ADI  114 (307)
Q Consensus        49 d~~~l~~~l~---~~~~~v~~~~~~-n~tG~~~-~---~~~l~~~~~~~~~~li~D~a~~-~---~~~~~~~~~~--~d~  114 (307)
                      +++++++.+.   +++.+++++... +..|... |   +++|.++|++||+++|.||++. .   |.......++  .|+
T Consensus       190 ~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi  269 (429)
T d1s0aa_         190 DMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDI  269 (429)
T ss_dssp             GGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSE
T ss_pred             hhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccceecccc
Confidence            4555555443   678899998764 4445543 3   9999999999999999999986 2   2322333344  466


Q ss_pred             EEeccccccccCCCceeEEEEEcChhHHHHHHHHHH-----hcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHHHH
Q 021783          115 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-----AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFL  189 (307)
Q Consensus       115 ~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l  189 (307)
                      ++  ++|.+++ .+..+|.++++++ +.+.+.....     .......+..+..+.+.++.++.  +++.+++.++.+++
T Consensus       270 ~~--~gK~l~g-G~~p~~av~~~~~-i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~--~~~~~~~~~~g~~l  343 (429)
T d1s0aa_         270 LC--LGKALTG-GTMTLSATLTTRE-VAETISNGEAGCFMHGPTFMGNPLACAAANASLAILES--GDWQQQVADIEVQL  343 (429)
T ss_dssp             EE--ECGGGGT-SSSCCEEEEECHH-HHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHH
T ss_pred             cc--ccccccc-ccccccchhhHHH-HHhccCCCCCcceeecCCCCCCcccchhhhcccccccc--ccccchhhHHHHHH
Confidence            65  7898843 3345888888854 4443332111     11223445666666666655432  33445555555444


Q ss_pred             hcCCCccEEecCCCCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcH
Q 021783          190 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV  269 (307)
Q Consensus       190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~  269 (307)
                      ++.-       ..+.+.+.+    ...++.|.++.+.+........+.+.+..+|+.+.+..                  
T Consensus       344 ~~~L-------~~l~~~~~v----~~vrg~Gl~~~~e~~~~~~~~~~~~~~~~~Gl~~~~~g------------------  394 (429)
T d1s0aa_         344 REQL-------APARDAEMV----ADVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRPFG------------------  394 (429)
T ss_dssp             HHHH-------GGGGGCTTE----EEEEEETTEEEEEESSCBCHHHHHHHHHHTTEECCCBT------------------
T ss_pred             HHHH-------HHhccCCce----EEEeecccEEEEEecCcccHHHHHHHHHHCCcEEEecC------------------
Confidence            4321       001111111    12255688888988655557788888888888765422                  


Q ss_pred             HHHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          270 EVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       270 ~~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                                +.+|+++.+    +++|+.++.|.++|++
T Consensus       395 ----------~~i~~~Ppl~it~~eid~~~~~l~~al~e  423 (429)
T d1s0aa_         395 ----------KLIYLMPPYIILPQQLQRLTAAVNRAVQD  423 (429)
T ss_dssp             ----------TEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred             ----------CEEEEeCCcCCCHHHHHHHHHHHHHHHHh
Confidence                      248888654    7888888888888865

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.16  E-value=3.8e-11  Score=103.60  Aligned_cols=126  Identities=17%  Similarity=0.165  Sum_probs=83.2

Q ss_pred             EEEEecCCChHHHHhhcC---CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccCC---CCcCCccCC
Q 021783           41 VVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS---PVLSRPLEL  110 (307)
Q Consensus        41 ~~~~v~~~d~~~l~~~l~---~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~~---~~~~~~~~~  110 (307)
                      +...++.+|++++++.+.   .+..+|+++......|.+.+    +++|.++|++||+++|.||++..   |.......+
T Consensus       177 ~~~~~~~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~~~~~~~~  256 (427)
T d2gsaa_         177 NTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQEKF  256 (427)
T ss_dssp             TEEEECTTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTCHHHHT
T ss_pred             ceeccCcchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceecccchHHhc
Confidence            445567789999999987   47789999988887888876    99999999999999999999952   222112223


Q ss_pred             C--ccEEEeccccccccCCCceeEEEEEcChhHHHHHHHHHH---hcCCCCChhhHHHHhhccccH
Q 021783          111 G--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN---AEGSGLAPFDCWICLRGVKTM  171 (307)
Q Consensus       111 ~--~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~  171 (307)
                      |  .|+++  ++|.+++  |...|.++++++ +.+.+.....   .......+.....+.+.++.+
T Consensus       257 gi~PDi~~--~gK~lgg--G~p~~a~~~~~~-i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i  317 (427)
T d2gsaa_         257 GVTPDLTT--LGKIIGG--GLPVGAYGGKRE-IMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELL  317 (427)
T ss_dssp             TCCCSEEE--ECGGGGT--TSCCEEEEECHH-HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHh--hhhccCC--CcceeeeeehHH-HHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHh
Confidence            3  56766  7787753  455777888754 4333321111   112234456666666655443

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.08  E-value=2.9e-10  Score=99.26  Aligned_cols=118  Identities=16%  Similarity=0.188  Sum_probs=77.1

Q ss_pred             eEEEcCCCCcchHHHHhhhcccCCcEEEEecC---------------CChHHHHhhcC----CCceEEEEeCCCCCcccc
Q 021783           16 EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---------------CDLDEVASAIG----PWTKLVWVESPTNPRQQI   76 (307)
Q Consensus        16 ~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------------~d~~~l~~~l~----~~~~~v~~~~~~n~tG~~   76 (307)
                      .++.+.+-|.++.    ......|..++.++.               .|++++++++.    ..+.+++++.++|..|..
T Consensus       123 ~~i~~~~h~~t~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~  198 (465)
T d1ax4a_         123 PVFISNFHFDTTA----AHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQ  198 (465)
T ss_dssp             CEEEESSCCHHHH----HHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSB
T ss_pred             eEEeccchhhhhH----HHHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCcee
Confidence            3455544443333    334556777766532               27889998886    345667777777765543


Q ss_pred             -c---cHHHHHHHHHHcCCEEEEeCccCCCCcC-----CccC-------------CCccEEEeccccccccCCCceeEEE
Q 021783           77 -C---DIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLE-------------LGADIVMHSATKFIAGHSDVMAGVL  134 (307)
Q Consensus        77 -~---~~~~l~~~~~~~~~~li~D~a~~~~~~~-----~~~~-------------~~~d~~~~s~~K~~~g~~g~~~G~~  134 (307)
                       .   ++++|.++|++||+++|+|++|..+...     ....             ...|++++|.+|.++++.   +|++
T Consensus       199 ~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~---~g~l  275 (465)
T d1ax4a_         199 PVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNI---GGLV  275 (465)
T ss_dssp             CCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSS---CEEE
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCccccc---ceeE
Confidence             3   4889999999999999999998532110     0000             125899999999885543   7888


Q ss_pred             EEcChh
Q 021783          135 AVKGER  140 (307)
Q Consensus       135 ~~~~~~  140 (307)
                      +.++..
T Consensus       276 ~~~~~~  281 (465)
T d1ax4a_         276 AIRDNE  281 (465)
T ss_dssp             EESSCH
T ss_pred             eecchH
Confidence            887653

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.07  E-value=2.4e-09  Score=88.09  Aligned_cols=250  Identities=14%  Similarity=0.076  Sum_probs=129.4

Q ss_pred             HHHHHHhcCCCCeEEEcCCCCcchHHHHhhhcccCCcEEEEecC-C---ChHHHHhhc---C----CCceEEEEeCCCCC
Q 021783            4 LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-C---DLDEVASAI---G----PWTKLVWVESPTNP   72 (307)
Q Consensus         4 l~~~~~~~~~gd~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~---d~~~l~~~l---~----~~~~~v~~~~~~n~   72 (307)
                      ..++..++.+++++++..+.|.+..... . ....+........ .   +.+...+..   .    +++.+++++.++| 
T Consensus        66 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  142 (340)
T d1svva_          66 LIACSLALRPWEAVIATQLGHISTHETG-A-IEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTE-  142 (340)
T ss_dssp             HHHHHHHCCTTEEEEEETTSHHHHSSTT-H-HHHTTCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCT-
T ss_pred             HHHHHHHhhhccccccccccceeeeecc-c-ccccceeeeecccccccccchhHHHHhhhhhcccCCcceeeeeccccc-
Confidence            3566678899999998888776554221 1 1122222222222 1   222222221   1    2334444545555 


Q ss_pred             ccccc---cHHHHHHHHHHcCCEEEEeCccCCCCcC-Cc-------cCCCccEEEeccccccccCCCceeEEEEEcChhH
Q 021783           73 RQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS-RP-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL  141 (307)
Q Consensus        73 tG~~~---~~~~l~~~~~~~~~~li~D~a~~~~~~~-~~-------~~~~~d~~~~s~~K~~~g~~g~~~G~~~~~~~~~  141 (307)
                      .|...   ++..+.+.|+++|.++++|+++..+... ..       .....++...+..|...+. +  .++........
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~  219 (340)
T d1svva_         143 VGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMF-G--EALIILNDALK  219 (340)
T ss_dssp             TSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSS-C--EEEEECSGGGC
T ss_pred             ccccccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccc-c--ccccccchhhh
Confidence            45544   4778889999999999999998633222 11       1113456666666665332 2  44444433322


Q ss_pred             HHHHHHHHHhcCCCCCh-hhHHHHhhccc--cHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccC
Q 021783          142 AKELYFLQNAEGSGLAP-FDCWICLRGVK--TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  218 (307)
Q Consensus       142 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  218 (307)
                      ...........+..... .........++  ......+....+.+.+.+.++...         ..      +..   +.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g---------~~------~~~---p~  281 (340)
T d1svva_         220 PNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACG---------IR------LAW---PS  281 (340)
T ss_dssp             TTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTT---------CC------BSS---CC
T ss_pred             hhhhhhcccccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcCC---------Ce------eec---CC
Confidence            22222222222222222 22222222222  223334444555566666665432         10      000   11


Q ss_pred             CCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEeccCChHHHHHHH
Q 021783          219 AGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL  298 (307)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~~~~~i~~l  298 (307)
                      ..+++.+.+++. ....+.+.+...++.+...                           .++++|+|++...+++.|+.+
T Consensus       282 ~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~---------------------------~~~~vR~s~~~~~t~edid~~  333 (340)
T d1svva_         282 ASNQLFPILENT-MIAELNNDFDMYTVEPLKD---------------------------GTCIMRLCTSWATEEKECHRF  333 (340)
T ss_dssp             SSSEECBEEEHH-HHHHHTTTEECEEEEEETT---------------------------TEEEEEEECCTTCCHHHHHHH
T ss_pred             CceEEEEeCCHH-HHHHHHHhhhhhcccccCC---------------------------CCcEEEEECCCCCCHHHHHHH
Confidence            355666666543 3677776666655544332                           245699999998888999999


Q ss_pred             HHHHhcC
Q 021783          299 DKALRTG  305 (307)
Q Consensus       299 ~~~l~~~  305 (307)
                      .++|+++
T Consensus       334 l~~l~~l  340 (340)
T d1svva_         334 VEVLKRL  340 (340)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            8888764

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.06  E-value=4.9e-11  Score=103.82  Aligned_cols=194  Identities=15%  Similarity=0.162  Sum_probs=117.6

Q ss_pred             CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccC-C---CCcCCccCCC----ccEEEeccccccccC
Q 021783           59 PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-S---PVLSRPLELG----ADIVMHSATKFIAGH  126 (307)
Q Consensus        59 ~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~-~---~~~~~~~~~~----~d~~~~s~~K~~~g~  126 (307)
                      .++.+|+++..+...|...+    +++|.++|++||+++|.||++. .   |.+.....+|    .|++  +++|.++  
T Consensus       247 ~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv--~~gK~l~--  322 (461)
T d1ohwa_         247 KTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVM--TFSKKMM--  322 (461)
T ss_dssp             CCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEE--EECGGGS--
T ss_pred             CccceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhh--hhhhccc--
Confidence            57889999988887787754    9999999999999999999985 2   3333333333    4666  5789874  


Q ss_pred             CCceeEEEEEcChhHHHHHHHHHHhcCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHH----HHhcCCCccEEecCC
Q 021783          127 SDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE----FLASHPRVKKVNYAG  202 (307)
Q Consensus       127 ~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~----~l~~~~~~~~~~~~~  202 (307)
                          +|+...... +... ............+..+..+.+.++.+..  +++.++.+.+.+    .+++..   . .++.
T Consensus       323 ----~g~~~~~~~-~~~~-~~~~~~~T~~g~p~~~aaa~a~l~~i~~--~~l~~~~~~~g~~l~~~l~~l~---~-~~~~  390 (461)
T d1ohwa_         323 ----TGGFFHKEE-FRPN-APYRIFNTWLGDPSKNLLLAEVINIIKR--EDLLSNAAHAGKVLLTGLLDLQ---A-RYPQ  390 (461)
T ss_dssp             ----SEEEEECGG-GSCS-STTSSCCSCSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHH---H-HCTT
T ss_pred             ----ccccccccc-cccc-cccccccccccccccchhhcccchhhhh--hhHHHHHHHHHHHHHHHHHHHH---h-hCCC
Confidence                344444422 2110 0011112223445666666666655532  223333333333    333210   0 0000


Q ss_pred             CCCCCchHHHhhhccCCCceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeE
Q 021783          203 LPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLV  282 (307)
Q Consensus       203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i  282 (307)
                      +         ....++.|.++.+.+.+.+...++.+.+..+|+.+...+                           ++.|
T Consensus       391 ~---------i~~vrG~Gl~~~ie~~~~~~~~~i~~~~~~~Gll~~~~~---------------------------~~~i  434 (461)
T d1ohwa_         391 F---------ISRVRGRGTFCSFDTPDESIRNKLISIARNKGVMLGGCG---------------------------DKSI  434 (461)
T ss_dssp             T---------CEEEEEETTEEEEECSSHHHHHHHHHHHHHTTEECEEET---------------------------TTEE
T ss_pred             c---------eEEeeeeeEEEEEEcCCHHHHHHHHHHHHHCCeEEeeCC---------------------------CCEE
Confidence            0         001245688999999888888899999998999764411                           2347


Q ss_pred             EEEecc----CChHHHHHHHHHHHhc
Q 021783          283 RISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       283 Ris~~~----~~~~~~i~~l~~~l~~  304 (307)
                      |+.+.+    ++++..++.|.++|.+
T Consensus       435 r~~PpL~it~~eid~~~~~l~~~l~e  460 (461)
T d1ohwa_         435 RFRPTLVFRDHHAHLFLNIFSDILAD  460 (461)
T ss_dssp             ECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             EEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence            777654    7888888888888764

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=98.97  E-value=3.2e-09  Score=91.55  Aligned_cols=198  Identities=13%  Similarity=0.128  Sum_probs=113.4

Q ss_pred             CCceEEEEeCCCCCcccccc----HHHHHHHHHHcCCEEEEeCccCC-CCc---CCccCCC--ccEEEeccccccccCCC
Q 021783           59 PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVL---SRPLELG--ADIVMHSATKFIAGHSD  128 (307)
Q Consensus        59 ~~~~~v~~~~~~n~tG~~~~----~~~l~~~~~~~~~~li~D~a~~~-~~~---~~~~~~~--~d~~~~s~~K~~~g~~g  128 (307)
                      .+..+|+++..+...|...+    +++|.++|++||+++|.||++.. |..   .....+|  .|+++  ++|.+++  |
T Consensus       200 ~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~--~gK~l~g--G  275 (431)
T d1zoda1         200 GNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILT--LSKTLGA--G  275 (431)
T ss_dssp             SCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEE--ECHHHHT--T
T ss_pred             ccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCCcchhc--ccccccc--c
Confidence            57889999988776777764    99999999999999999999972 332   2233344  46555  8898853  3


Q ss_pred             ceeEEEEEcChhHHHHHHHHHHh--cCCCCChhhHHHHhhccccHHHHHHHHHHHHHHHHH--------HHhcCCCccEE
Q 021783          129 VMAGVLAVKGERLAKELYFLQNA--EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE--------FLASHPRVKKV  198 (307)
Q Consensus       129 ~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~--------~l~~~~~~~~~  198 (307)
                      ...+.++++++ ...........  ......+..+..+.+.++.+..  +...++...+.+        .+.+++.+.. 
T Consensus       276 ~p~~av~~~~~-~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~--~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~-  351 (431)
T d1zoda1         276 LPLAAIVTSAA-IEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR--DGLVARANVMGDRLRRGLLDLMERFDCIGD-  351 (431)
T ss_dssp             SSCEEEEECHH-HHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEE-
T ss_pred             cccceeeeeec-chhhhhcccccccCCCCCCcchHHHHHHHHHHhhh--hhhhHHHHHHHHHHhhhhhhhhhcCCCeEE-
Confidence            44677777644 33322221111  1223444555555555443221  222333333332        2233332211 


Q ss_pred             ecCCCCCCCchHHHhhhccCCCceEEEEeC--------CHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHH
Q 021783          199 NYAGLPEHPGHELHYSQAKGAGSVLSFLTG--------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE  270 (307)
Q Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~  270 (307)
                                       .++.|.++.+.+.        .......+.+.+..+|+....-.                   
T Consensus       352 -----------------vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~-------------------  395 (431)
T d1zoda1         352 -----------------VRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQ-------------------  395 (431)
T ss_dssp             -----------------EEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEEC-------------------
T ss_pred             -----------------EeecceEEEEEEecCCcccCccHHHHHHHHHHHHHhCcccCeee-------------------
Confidence                             2445777777651        11235666777776776432100                   


Q ss_pred             HHHhcCCCCCeEEEEecc----CChHHHHHHHHHHHhc
Q 021783          271 VRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  304 (307)
Q Consensus       271 ~~~~~~~~~~~iRis~~~----~~~~~~i~~l~~~l~~  304 (307)
                          .+...+.+|+++.+    +++|+.++.|.++|++
T Consensus       396 ----~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~  429 (431)
T d1zoda1         396 ----LPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER  429 (431)
T ss_dssp             ----CTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ----ecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                00124569999865    7888888888888875

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=98.59  E-value=2e-07  Score=80.23  Aligned_cols=245  Identities=16%  Similarity=0.167  Sum_probs=142.2

Q ss_pred             eEEEcCCCCcchHHHHhhhcccCCcEEEEecCC-----ChHHHHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcC
Q 021783           16 EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG   90 (307)
Q Consensus        16 ~Vlv~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~~~   90 (307)
                      .+++..+.+.....   ......+..++.++.+     +.+.+......++.++++++|++..+...+.+++.+++|+.+
T Consensus       156 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g  232 (471)
T d1wyub1         156 RVVLVPDSAHGSNP---ATASMAGYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEAG  232 (471)
T ss_dssp             CEEEEETTSCTHHH---HHHHHTTCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSSCTTSCCCTTHHHHHHHHHHHT
T ss_pred             ccccCCccccccee---eeeecccceeecccccccccccchhhhhhhhccccceeeccCCCcccccchhhhhHHHHHhcc
Confidence            34444544444442   3344566777777652     778888888888999999999886444446999999999999


Q ss_pred             CEEEEeCccC--CCCcCCccCCCccEEEeccccccccC-----CCceeEEEEEcChhHHHHHHHH---------------
Q 021783           91 ALLLVDNSIM--SPVLSRPLELGADIVMHSATKFIAGH-----SDVMAGVLAVKGERLAKELYFL---------------  148 (307)
Q Consensus        91 ~~li~D~a~~--~~~~~~~~~~~~d~~~~s~~K~~~g~-----~g~~~G~~~~~~~~~~~~~~~~---------------  148 (307)
                      ..+++|.+..  ...+..+...+.|+++...++.++.|     ++  .|++.++++......-..               
T Consensus       233 ~~~~~~~~~~~~~~~l~~p~~~g~div~vg~~q~~G~P~~~GGP~--~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~RE  310 (471)
T d1wyub1         233 VQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPG--SGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRP  310 (471)
T ss_dssp             CEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCC--CCCEEECGGGGGGCCSCEEEECSSCEEEECCCT
T ss_pred             ccccccccchhhhhhccccCccccccccccccccccccccccccc--ccceeehhhhhccCCCceecCCCccccccCCCc
Confidence            9889887753  22334566678888888888855222     34  789999876543321100               


Q ss_pred             ---HHhcCCCCCh-----hhHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCCccEEecCCCCCCCchHHHhhhccCCC
Q 021783          149 ---QNAEGSGLAP-----FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG  220 (307)
Q Consensus       149 ---~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  220 (307)
                         .+...++...     ...++...|-+.+++.-+...+++.++.+.|+. +++. +..++    |           ..
T Consensus       311 qhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~-~G~~-~~~~~----~-----------ff  373 (471)
T d1wyub1         311 KSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-KGYR-VPYDG----P-----------SM  373 (471)
T ss_dssp             TCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCB-CSSCS----S-----------CC
T ss_pred             ccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh-cCce-eccCc----c-----------ee
Confidence               0001111111     123344445556666666778888888888864 3221 11111    0           11


Q ss_pred             ceEEEEeCCHHHHHHHHhcCCcceeecCCCCccceeecccccCCCCCcHHHHHhcCCCCCeEEEEecc----CChHHHHH
Q 021783          221 SVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLIS  296 (307)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iRis~~~----~~~~~~i~  296 (307)
                      .-|.++++......++.+.|.++|+..  |.    ...|                ...++.+-+++.-    +|+|.+++
T Consensus       374 ~EFvv~~~~~~~~~~i~k~L~~~G~~~--~~----~~~p----------------~~~~~~llv~vTE~~tkedID~lv~  431 (471)
T d1wyub1         374 HEFVAQPPEGFRALDLAKGLLELGFHP--PT----VYFP----------------LIVKEALMVEPTETEAKETLEAFAE  431 (471)
T ss_dssp             SCEEEBCSTTCCHHHHHHHHHHTTCCC--CE----ESCS----------------TTSTTCEEECCCTTSCHHHHHHHHH
T ss_pred             eEEeecCCCCCCHHHHHHHHHHcCCCC--Cc----ccCc----------------CCCCCeEEEecCCCCCHHHHHHHHH
Confidence            122333332222556666666666622  11    1112                1134567888853    67777777


Q ss_pred             HHHHHHhc
Q 021783          297 DLDKALRT  304 (307)
Q Consensus       297 ~l~~~l~~  304 (307)
                      .|++++++
T Consensus       432 aL~~i~~e  439 (471)
T d1wyub1         432 AMGALLKK  439 (471)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHHHh
Confidence            77777764

>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Candida albicans [TaxId: 5476]}

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
domain: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
species: Candida albicans [TaxId: 5476]

Probab=81.25  E-value=1.4  Score=31.91  Aligned_cols=43  Identities=12%  Similarity=0.147  Sum_probs=35.0

Q ss_pred             HHhhcCCCceEEEEeCCCCCccccccHHHHHHHHHHcCCEEEE
Q 021783           53 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV   95 (307)
Q Consensus        53 l~~~l~~~~~~v~~~~~~n~tG~~~~~~~l~~~~~~~~~~li~   95 (307)
                      |.+...-.+.+++++-..++.|...+.+++.++|++|++.++.
T Consensus       150 L~~lAGl~P~avi~Eil~d~dG~~~~~~~~~~fA~~~~l~~is  192 (202)
T d1tksa_         150 LSTLAGLQPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKIIN  192 (202)
T ss_dssp             HHHHTTSCSBEEEEEBBCTTTCCBCBHHHHHHHHHHHTCCEEE
T ss_pred             HHHhcCCCccEEEEEEEECCCCCccCHHHHHHHHHHcCCCEEE
Confidence            4444445677888887778899999999999999999998873