Citrus Sinensis ID: 021805

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
Protein Sequence
MSQLFYTLPKRLTVSPSPPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASKEELLPSRT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccEEEEEcccccHHHHHHHcccHHHHHHHHHccccccccccccccEEEEEEEEEEEEcEEEEEEEEEEEEEEcccccEEEEEEEEEccEEEEEEEEccccccEEEEEEEEccccccEEEEEEccccccccccHHHHHHHHHHHHHccccccccccHHccccccccccccccccccccccEEEEEEEccccHHHHHHHHccccccccccccEEEEEEcHHHHHHHcHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHEEcccccccccccccHHccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHHccHHHHHHHHHHHHcccccccccEEEEEEEEEEEHcccccEEEEEEEEEEEEcccccccccEEEEcccEEEEEEEEcccccEEEEEEEEcccccccEEEEEcccccccccccHHHHHHHHHHHHHccEEcHHHHHHHHHHHcccccccccccccccccEEEEEEEEccccHHHHHHHccccccccccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
msqlfytlpkrltvspsppllhfnyrssrtrlvcskmptesspsplthsitipsqlsqpvhvvaapglsesdfrCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIfcketgqkvpgivfaRGPAVAVLILLDSEGETYAILTEQVRvptgrvilelpagmldddkgdfVGTAVREVEEETGIQLKLEDMIDLtaflypstgckffpsaggcdeEISLFLYRGRVDKEIIMQLQgketglrdhgelikvrvvpyrelwrttpdAKVLTAIALYEMAskeellpsrt
Flexible Loop (DISEMBL)
msqlfytlpkrltvspsppllhfnyrssRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILteqvrvptGRVILELpagmldddkgDFVGTAVREVEeetgiqlklEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLqgketglrdhgelikvrvvpyrelwrttpdakVLTAIALYemaskeellpsrt
Low Complexity Region (SEG)
MSQLFYTLPKRLTVSPSPPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASKEELLPSRT
Disordered region (IsUnstruct)
*****YT************LLHFNY**********************************VHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEM***********
Disordered Region (DISOPRED)
***LFYTLPKRLTVSPSPPLLH**Y*****************************QLSQPVHVVAAPGLSESDFRCAVESTLFKQWLK***************LKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEII*********LRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMAS*********
Disordered Region (DISEMBL)
MSQLFYTLPKRLTVSPSPPLLHFNYRSSRTRLV**************HSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASK********
Disordered Region (DISPRO)
*SQLFYTLPKRLTVSPSPPLLHFNYRSSRTRLVC*********SPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASKE*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSQLFYTLPKRLTVSPSPPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASKEELLPSRT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	307	2.2.26 [Sep-21-2011]
Q9SZ63	309	Nudix hydrolase 14, chlor	yes	no	0.967	0.961	0.711	1e-118
O61902	223	Putative nudix hydrolase	yes	no	0.319	0.439	0.287	7e-06
P44684	217	ADP-ribose pyrophosphatas	yes	no	0.550	0.778	0.334	3e-05
P54570	185	ADP-ribose pyrophosphatas	yes	no	0.260	0.432	0.412	0.0003
Q9P791	205	Uncharacterized Nudix hyd	yes	no	0.254	0.380	0.329	0.0005

>sp|Q9SZ63|NUD14_ARATH Nudix hydrolase 14, chloroplastic OS=Arabidopsis thaliana GN=NUDT14 PE=1 SV=2

 Score =  424 bits (1089), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/305 (71%), Positives = 254/305 (83%), Gaps = 8/305 (2%)

Query: 5   FYTLPKRLTVSPS---PPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVH 61
           F  LP RL   PS   P  LH ++  ++  L C KM + SS   LT SIT+PSQ ++PV 
Sbjct: 4   FTLLPSRLLAFPSRALPRRLHHHH--AKLILRC-KMSSSSSS--LTQSITLPSQPNEPVL 58

Query: 62  VVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFL 121
           V A  G+S SDFR A++S+LF+ WL+NL+SE+GILA+G M LKQVLIQGVDMFGKRIGFL
Sbjct: 59  VSATAGISSSDFRDAIDSSLFRNWLRNLESESGILADGSMTLKQVLIQGVDMFGKRIGFL 118

Query: 122 KFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAG 181
           KFKADIF KETGQKVPGIVFARGPAVAVLILL+S+GETYA+LTEQVRVPTG+++LELPAG
Sbjct: 119 KFKADIFDKETGQKVPGIVFARGPAVAVLILLESDGETYAVLTEQVRVPTGKIVLELPAG 178

Query: 182 MLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFL 241
           MLDDDKGDFVGTAVREVEEE GI+LK EDM+DLTAFL PSTG + FPS GGCDEE+S+FL
Sbjct: 179 MLDDDKGDFVGTAVREVEEEIGIKLKKEDMVDLTAFLDPSTGYRIFPSPGGCDEEMSVFL 238

Query: 242 YRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASKEE 301
           YRG+V+KE I QLQGKETGLR+HGE IKVR++PYRELWR T DAKVL +I LYEMA +E 
Sbjct: 239 YRGQVEKETIRQLQGKETGLREHGEFIKVRLIPYRELWRKTADAKVLMSIGLYEMAQREG 298

Query: 302 LLPSR 306
           L+ S+
Sbjct: 299 LVSSQ 303

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use ADP-glucose, ADP-mannose and ADP-ribose as substrates. Regulates the intracellular ADP-glucose levels linked to starch biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 2EC: 1

>sp|O61902|NDX2_CAEEL Putative nudix hydrolase 2 OS=Caenorhabditis elegans GN=ndx-2 PE=3 SV=1

 Score = 51.6 bits (122), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 57/101 (56%), Gaps = 3/101 (2%)

Query: 104 KQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAIL 163
           ++V+  G  +  +++GF      +   ++  +    V A    V+++  +  +G+ Y +L
Sbjct: 34  QEVVWNGKWIQTRQVGFKTHTGQVGVWQSVHRNTKPVEASADGVSIIARVRKQGKLYIVL 93

Query: 164 TEQVRVPTGRVILELPAGMLDDDKGDFV-GTAVREVEEETG 203
            +Q R+P G++ LELPAG++  D G+     A+RE++EETG
Sbjct: 94  VKQYRIPCGKLCLELPAGLI--DAGETAQQAAIRELKEETG 132

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|P44684|ADPP_HAEIN ADP-ribose pyrophosphatase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=nudF PE=1 SV=1

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 94/203 (46%), Gaps = 34/203 (16%)

Query: 100 DMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGET 159
           ++L +Q L +G     KRI   +FK  +F       V   +  +G A AV I  D + E 
Sbjct: 20  EILGEQTLYEGFFTL-KRI---QFKHKLFAGGQSGVVTRELLIKGAASAV-IAYDPK-ED 73

Query: 160 YAILTEQVRVPTGR--------VILELPAGMLDDDKGDF-VGTAVREVEEETGIQLKLED 210
             IL EQVR+             +LEL AGM++  KG+     A+RE EEE GIQ+K   
Sbjct: 74  SVILVEQVRIGAAYHPESHRSPWLLELIAGMVE--KGEKPEDVALRESEEEAGIQVK--- 128

Query: 211 MIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKV 270
             +LT  L        + S GG  E I LF   G VD     Q +G   GL +  E IKV
Sbjct: 129 --NLTHCL------SVWDSPGGIVERIHLFA--GEVDS---AQAKGIH-GLAEENEDIKV 174

Query: 271 RVVPYRELWRTTPDAKVLTAIAL 293
            VV   + ++   + K+   IA+
Sbjct: 175 HVVKREQAYQWMCEGKIDNGIAV 197

Acts on ADP-mannose and ADP-glucose as well as ADP-ribose. Prevents glycogen biosynthesis. The reaction catalyzed by this enzyme is a limiting step of the gluconeogenic process.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P54570|ADPP_BACSU ADP-ribose pyrophosphatase OS=Bacillus subtilis (strain 168) GN=nudF PE=1 SV=1

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 17/97 (17%)

Query: 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDF-VGTAVREVEEETGI 204
           AVAVL + D EG+   I+ +Q R P  R I+E+PAG L+  KG+    TA+RE+EEETG 
Sbjct: 45  AVAVLAVTD-EGKI--IMVKQFRKPLERTIVEIPAGKLE--KGEEPEYTALRELEEETGY 99

Query: 205 QLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFL 241
             K   +  +TA         F+ S G  DE + +FL
Sbjct: 100 TAK--KLTKITA---------FYTSPGFADEIVHVFL 125

Acts on ADP-mannose and ADP-glucose as well as ADP-ribose. Prevents glycogen biosynthesis. The reaction catalyzed by this enzyme is a limiting step of the gluconeogenic process.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q9P791|YN8C_SCHPO Uncharacterized Nudix hydrolase P35G2.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP35G2.12 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 142 ARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEE 201
           A   AVA+L ++  +G  + +  +Q R P G+  +E+PAG++ D K      A+RE+ EE
Sbjct: 51  ANVDAVAILAIVPIDGSPHVLCQKQFRPPIGKFCIEIPAGLV-DSKESCEDAAIRELREE 109

Query: 202 TGIQLKLEDMIDLTAFLYPSTG 223
           TG    +  ++D T  +Y   G
Sbjct: 110 TGY---VGTVMDSTTVMYNDPG 128

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
255537175	305	ADP-ribose pyrophosphatase, putative [Ri	0.973	0.980	0.721	1e-121
356513721	304	PREDICTED: nudix hydrolase 14, chloropla	0.928	0.937	0.738	1e-120
297813707	303	hypothetical protein ARALYDRAFT_490017 [	0.970	0.983	0.721	1e-119
224071638	270	predicted protein [Populus trichocarpa]	0.879	1.0	0.782	1e-119
356514188	270	PREDICTED: nudix hydrolase 14, chloropla	0.869	0.988	0.784	1e-119
18413722	309	nudix hydrolase 14 [Arabidopsis thaliana	0.967	0.961	0.711	1e-116
110622992	307	ADP-sugar diphosphatase [Solanum tuberos	0.954	0.954	0.719	1e-116
225426698	306	PREDICTED: nudix hydrolase 14, chloropla	0.938	0.941	0.711	1e-114
297742638	269	unnamed protein product [Vitis vinifera]	0.843	0.962	0.760	1e-112
4586103	310	putative protein [Arabidopsis thaliana]	0.967	0.958	0.699	1e-111

>gi|255537175|ref|XP_002509654.1| ADP-ribose pyrophosphatase, putative [Ricinus communis] gi|223549553|gb|EEF51041.1| ADP-ribose pyrophosphatase, putative [Ricinus communis]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/305 (72%), Positives = 253/305 (82%), Gaps = 6/305 (1%)

Query: 5   FYTLPKRLTVSPSPPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVA 64
             T PKR+ ++P   +LH   ++ R+R   S   +  SP PLT S+T+P+Q +QPV ++A
Sbjct: 3   LLTAPKRIVLAPFQYMLH---QTRRSRTPFSVKMSADSPQPLTQSLTLPTQPNQPVQIIA 59

Query: 65  APGLSESDFR---CAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFL 121
           APG+S SD R    A++S+LFKQWLKNLQSETGILA     LK+VL+QGVDMFGKRIGFL
Sbjct: 60  APGVSGSDLRPCRSAIDSSLFKQWLKNLQSETGILATPSFSLKRVLVQGVDMFGKRIGFL 119

Query: 122 KFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAG 181
           KFKADI  +ETGQKVPGIVFARGPAV VLILLD+EGETYA+LTEQVRVPTGR++LELPAG
Sbjct: 120 KFKADIIDQETGQKVPGIVFARGPAVTVLILLDAEGETYAVLTEQVRVPTGRLVLELPAG 179

Query: 182 MLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFL 241
           MLDDDKGDFVGTAVREVEEETGI+L LEDM+DLT+FL PSTGC+  PS GGCDEEIS+FL
Sbjct: 180 MLDDDKGDFVGTAVREVEEETGIRLNLEDMVDLTSFLDPSTGCRIIPSPGGCDEEISVFL 239

Query: 242 YRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASKEE 301
           YRG VDKEII QLQGKETGL DHGELIK+ VVPYR+LWR T DAK L AIALYEMA KE 
Sbjct: 240 YRGCVDKEIITQLQGKETGLHDHGELIKLHVVPYRKLWRMTADAKALMAIALYEMAKKEG 299

Query: 302 LLPSR 306
           LLPS+
Sbjct: 300 LLPSK 304

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513721|ref|XP_003525559.1| PREDICTED: nudix hydrolase 14, chloroplastic-like [Glycine max]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/287 (73%), Positives = 245/287 (85%), Gaps = 2/287 (0%)

Query: 19  PLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVE 78
           PL   N+ S + +    KM TES+   LTH+IT+P++ ++PVHVVAAPG+S SDF  AVE
Sbjct: 17  PLHSSNWVSKKNKGFSCKMSTESTS--LTHTITLPNKHNEPVHVVAAPGVSPSDFWSAVE 74

Query: 79  STLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVPG 138
            +LFKQWL NLQ+E G+LA+G + L+QVLIQGVDMFGKRIGFLKFKADIF KETG+ VPG
Sbjct: 75  CSLFKQWLHNLQTENGVLADGTLALRQVLIQGVDMFGKRIGFLKFKADIFDKETGKMVPG 134

Query: 139 IVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREV 198
           IVFARGPAVAVL+LL+SEGETYA+LTEQ RVP GR+ILELPAGMLDDDKGDFVGTAVREV
Sbjct: 135 IVFARGPAVAVLMLLESEGETYAVLTEQARVPVGRIILELPAGMLDDDKGDFVGTAVREV 194

Query: 199 EEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKE 258
           EEE G++L + DM+DLTAFL  +TGCK FPS GGCDEEIS+FLYRGRVDKEII QLQGKE
Sbjct: 195 EEEIGMKLNVGDMVDLTAFLDSATGCKVFPSGGGCDEEISIFLYRGRVDKEIISQLQGKE 254

Query: 259 TGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASKEELLPS 305
           TGLR+HGELIKVRVVPY++LW TT D KVL A+AL EMA KE LLP+
Sbjct: 255 TGLREHGELIKVRVVPYKKLWHTTADCKVLVAVALLEMAMKEGLLPA 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813707|ref|XP_002874737.1| hypothetical protein ARALYDRAFT_490017 [Arabidopsis lyrata subsp. lyrata] gi|297320574|gb|EFH50996.1| hypothetical protein ARALYDRAFT_490017 [Arabidopsis lyrata subsp. lyrata]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/302 (72%), Positives = 249/302 (82%), Gaps = 4/302 (1%)

Query: 5   FYTLPKRLTVSPSPPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVA 64
           F  LP RL    S    H  +  +   L C KM   SS SPLTHSIT+PSQ ++PV V A
Sbjct: 6   FTLLPSRLLACYSRAFPHRLHHHAELILRC-KM---SSSSPLTHSITLPSQPNEPVLVSA 61

Query: 65  APGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFK 124
             G+S SDFR A++S+LF+ WL+NL+SETGILA+G M LKQVLIQGVDMFGKRIGFLKFK
Sbjct: 62  TSGISSSDFRDAIDSSLFRNWLRNLESETGILADGSMTLKQVLIQGVDMFGKRIGFLKFK 121

Query: 125 ADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLD 184
           ADIF KETGQKVPGIVFARGPAVAVLILL+S GETYA+LTEQVRVPTG+++LELPAGMLD
Sbjct: 122 ADIFDKETGQKVPGIVFARGPAVAVLILLESNGETYAVLTEQVRVPTGKIVLELPAGMLD 181

Query: 185 DDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRG 244
           DDKGDFVGTAVREVEEE GI+LK EDM+DLTAFL PSTG + FPS GGCDEE+S+FLYRG
Sbjct: 182 DDKGDFVGTAVREVEEEIGIKLKKEDMVDLTAFLDPSTGYRIFPSPGGCDEEMSVFLYRG 241

Query: 245 RVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASKEELLP 304
           +V+KE I QLQGKETGLR+HGE IKVR++PYRELWR T DAKVL +I LYEMA +E L+ 
Sbjct: 242 QVEKETIRQLQGKETGLREHGEFIKVRLIPYRELWRKTADAKVLMSIGLYEMAQREGLVS 301

Query: 305 SR 306
           S 
Sbjct: 302 SH 303

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071638|ref|XP_002303547.1| predicted protein [Populus trichocarpa] gi|222840979|gb|EEE78526.1| predicted protein [Populus trichocarpa]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/271 (78%), Positives = 237/271 (87%), Gaps = 1/271 (0%)

Query: 37  MPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGIL 96
           M +ESS  PLTHS+T+P+QL QP+ ++AAPG+S+S FR A+ES+LFKQWLKNL+SE GIL
Sbjct: 1   MSSESS-QPLTHSLTLPTQLGQPIKIIAAPGVSDSQFRTAIESSLFKQWLKNLESENGIL 59

Query: 97  ANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSE 156
           A G  LLKQVL+QGVDMFG+RIGFLKFKADIF KETGQK+PGIVFARGPAV VLILL SE
Sbjct: 60  ATGSFLLKQVLVQGVDMFGQRIGFLKFKADIFEKETGQKIPGIVFARGPAVTVLILLSSE 119

Query: 157 GETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTA 216
           GETYA+LTEQVRVPTGR++LELPAGMLD DKGDFVGTAVREVEEETGI LKL DM+DLTA
Sbjct: 120 GETYAVLTEQVRVPTGRLVLELPAGMLDADKGDFVGTAVREVEEETGIHLKLGDMVDLTA 179

Query: 217 FLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYR 276
           FL PSTG + FPS GGCDEEIS+FLYRG V KEII +LQGKETGLR+HGELIKV VVPY+
Sbjct: 180 FLDPSTGGRVFPSPGGCDEEISVFLYRGCVGKEIITKLQGKETGLREHGELIKVHVVPYK 239

Query: 277 ELWRTTPDAKVLTAIALYEMASKEELLPSRT 307
           ELWR T DAKVL AIALYEMA    LLP + 
Sbjct: 240 ELWRMTADAKVLMAIALYEMAKGGGLLPLKN 270

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514188|ref|XP_003525788.1| PREDICTED: nudix hydrolase 14, chloroplastic-like [Glycine max]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/269 (78%), Positives = 239/269 (88%), Gaps = 2/269 (0%)

Query: 37  MPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGIL 96
           M TES PS LTH+IT+P++ ++PVH+VAAPG+S SDF CAVES+LFKQWL NLQ+E GIL
Sbjct: 1   MSTES-PS-LTHTITLPNKHNEPVHIVAAPGVSNSDFWCAVESSLFKQWLHNLQTENGIL 58

Query: 97  ANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSE 156
           A+G M L+QV IQGVDMFGKRIGFLKFKADIF KETG+ +PGIVFARGPAVAVLILL+SE
Sbjct: 59  ADGTMTLRQVRIQGVDMFGKRIGFLKFKADIFDKETGKMIPGIVFARGPAVAVLILLESE 118

Query: 157 GETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTA 216
           GETYA+LTEQ RVP GR ILELPAGMLDDDKGDFVGTAVREVEEETG++L +EDM+DLTA
Sbjct: 119 GETYAVLTEQARVPVGRNILELPAGMLDDDKGDFVGTAVREVEEETGLKLNVEDMVDLTA 178

Query: 217 FLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYR 276
           FL  +TGC+ FPS GGCDEEIS+FLYRG VDKEII QLQGKETGLR+HGELIKVRVVPY+
Sbjct: 179 FLDSTTGCRVFPSGGGCDEEISIFLYRGCVDKEIITQLQGKETGLREHGELIKVRVVPYK 238

Query: 277 ELWRTTPDAKVLTAIALYEMASKEELLPS 305
           +LWRTT D  VL A+AL EMA KE LLP+
Sbjct: 239 KLWRTTADCMVLVAVALLEMAMKEGLLPT 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18413722|ref|NP_567384.1| nudix hydrolase 14 [Arabidopsis thaliana] gi|68565950|sp|Q9SZ63.2|NUD14_ARATH RecName: Full=Nudix hydrolase 14, chloroplastic; Short=AtNUDT14; AltName: Full=ADP-sugar diphosphatase; Short=AtASPP; Flags: Precursor gi|15450341|gb|AAK96464.1| AT4g11980/F16J13_50 [Arabidopsis thaliana] gi|24797050|gb|AAN64537.1| At4g11980/F16J13_50 [Arabidopsis thaliana] gi|67966275|emb|CAG38620.1| ADP-sugar diphosphatase [Arabidopsis thaliana] gi|332657679|gb|AEE83079.1| nudix hydrolase 14 [Arabidopsis thaliana]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/305 (71%), Positives = 254/305 (83%), Gaps = 8/305 (2%)

Query: 5   FYTLPKRLTVSPS---PPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVH 61
           F  LP RL   PS   P  LH ++  ++  L C KM + SS   LT SIT+PSQ ++PV 
Sbjct: 4   FTLLPSRLLAFPSRALPRRLHHHH--AKLILRC-KMSSSSSS--LTQSITLPSQPNEPVL 58

Query: 62  VVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFL 121
           V A  G+S SDFR A++S+LF+ WL+NL+SE+GILA+G M LKQVLIQGVDMFGKRIGFL
Sbjct: 59  VSATAGISSSDFRDAIDSSLFRNWLRNLESESGILADGSMTLKQVLIQGVDMFGKRIGFL 118

Query: 122 KFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAG 181
           KFKADIF KETGQKVPGIVFARGPAVAVLILL+S+GETYA+LTEQVRVPTG+++LELPAG
Sbjct: 119 KFKADIFDKETGQKVPGIVFARGPAVAVLILLESDGETYAVLTEQVRVPTGKIVLELPAG 178

Query: 182 MLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFL 241
           MLDDDKGDFVGTAVREVEEE GI+LK EDM+DLTAFL PSTG + FPS GGCDEE+S+FL
Sbjct: 179 MLDDDKGDFVGTAVREVEEEIGIKLKKEDMVDLTAFLDPSTGYRIFPSPGGCDEEMSVFL 238

Query: 242 YRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASKEE 301
           YRG+V+KE I QLQGKETGLR+HGE IKVR++PYRELWR T DAKVL +I LYEMA +E 
Sbjct: 239 YRGQVEKETIRQLQGKETGLREHGEFIKVRLIPYRELWRKTADAKVLMSIGLYEMAQREG 298

Query: 302 LLPSR 306
           L+ S+
Sbjct: 299 LVSSQ 303

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110622992|emb|CAJ55406.1| ADP-sugar diphosphatase [Solanum tuberosum]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/307 (71%), Positives = 247/307 (80%), Gaps = 14/307 (4%)

Query: 11  RLTVSPS-----PPLLHFNYRSSRTRLV---CS-----KMPTESSPSPLTHSITIPSQLS 57
           RLTVS        PL  F + SS + L    CS     KM T + PS +TH I +P+QL 
Sbjct: 2   RLTVSRCGLPFVKPLFEFPFSSSSSTLWPRNCSGSFSVKMST-TPPSRITHIINLPTQLD 60

Query: 58  QPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKR 117
           QPV VVAAPG+S++ FR A+ES+LFKQWLKN+Q+ETG+LANG M LKQVLIQGVDMFG+R
Sbjct: 61  QPVSVVAAPGVSDTHFRNAIESSLFKQWLKNIQTETGLLANGAMSLKQVLIQGVDMFGER 120

Query: 118 IGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILE 177
           +GFLKFKADI  KETGQKVPGIVF+RGPAVAVLILLDSEGETYA+LTEQVRVP GR+ILE
Sbjct: 121 LGFLKFKADIIDKETGQKVPGIVFSRGPAVAVLILLDSEGETYAVLTEQVRVPVGRLILE 180

Query: 178 LPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEI 237
           LPAGMLDDD+GDF GTAVREVEEETGI L   DM+DLTAFL  STG + FPS GGCDEE+
Sbjct: 181 LPAGMLDDDQGDFAGTAVREVEEETGIHLNAHDMVDLTAFLDASTGGRVFPSPGGCDEEM 240

Query: 238 SLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMA 297
           SLFLYRG V KE I QLQGKETGLRDHGELIKV VVPY +LWR T DAK LTAI LYEMA
Sbjct: 241 SLFLYRGNVSKEKIQQLQGKETGLRDHGELIKVHVVPYDKLWRATADAKALTAICLYEMA 300

Query: 298 SKEELLP 304
            ++ LLP
Sbjct: 301 KRDGLLP 307

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426698|ref|XP_002281806.1| PREDICTED: nudix hydrolase 14, chloroplastic [Vitis vinifera] gi|147766435|emb|CAN76052.1| hypothetical protein VITISV_016365 [Vitis vinifera]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/295 (71%), Positives = 245/295 (83%), Gaps = 7/295 (2%)

Query: 10  KRLTVSPSPPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAPGLS 69
           ++  +S SP LL  N+R    R  C KM ++SS   LT+SIT+P+QL+ PV V AAPG+S
Sbjct: 16  RKYALSSSPILLQ-NHR----RTFCPKMSSDSSS--LTYSITLPNQLADPVTVDAAPGIS 68

Query: 70  ESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFC 129
            S+FR A++S+LFKQWLKN+QSE G+L+NG M L++VLIQGVDMFG RIGFLKFKADI  
Sbjct: 69  ASEFRKAIDSSLFKQWLKNMQSEAGVLSNGAMSLERVLIQGVDMFGNRIGFLKFKADILD 128

Query: 130 KETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGD 189
           KETG+KVPGIVFARGPAVAVLILLDSEGE Y +LTEQVRVP G+ ILELPAGML++D+GD
Sbjct: 129 KETGKKVPGIVFARGPAVAVLILLDSEGEIYTVLTEQVRVPVGKRILELPAGMLENDRGD 188

Query: 190 FVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKE 249
           F+GTA REVEEETGI L L+DM+DLTAFL PSTGC+ FPS GGCDEEISLFLY+G V KE
Sbjct: 189 FIGTAAREVEEETGIHLNLQDMVDLTAFLDPSTGCRLFPSPGGCDEEISLFLYKGSVSKE 248

Query: 250 IIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASKEELLP 304
            I QLQGK+TGLR+ GELIKV VVPY +LWR T DAK L+AIALYEMA KE LLP
Sbjct: 249 TITQLQGKKTGLRERGELIKVHVVPYEKLWRVTADAKTLSAIALYEMAKKEGLLP 303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742638|emb|CBI34787.3| unnamed protein product [Vitis vinifera]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/259 (76%), Positives = 226/259 (87%)

Query: 46  LTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQ 105
           LT+SIT+P+QL+ PV V AAPG+S S+FR A++S+LFKQWLKN+QSE G+L+NG M L++
Sbjct: 8   LTYSITLPNQLADPVTVDAAPGISASEFRKAIDSSLFKQWLKNMQSEAGVLSNGAMSLER 67

Query: 106 VLIQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTE 165
           VLIQGVDMFG RIGFLKFKADI  KETG+KVPGIVFARGPAVAVLILLDSEGE Y +LTE
Sbjct: 68  VLIQGVDMFGNRIGFLKFKADILDKETGKKVPGIVFARGPAVAVLILLDSEGEIYTVLTE 127

Query: 166 QVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 225
           QVRVP G+ ILELPAGML++D+GDF+GTA REVEEETGI L L+DM+DLTAFL PSTGC+
Sbjct: 128 QVRVPVGKRILELPAGMLENDRGDFIGTAAREVEEETGIHLNLQDMVDLTAFLDPSTGCR 187

Query: 226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDA 285
            FPS GGCDEEISLFLY+G V KE I QLQGK+TGLR+ GELIKV VVPY +LWR T DA
Sbjct: 188 LFPSPGGCDEEISLFLYKGSVSKETITQLQGKKTGLRERGELIKVHVVPYEKLWRVTADA 247

Query: 286 KVLTAIALYEMASKEELLP 304
           K L+AIALYEMA KE LLP
Sbjct: 248 KTLSAIALYEMAKKEGLLP 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4586103|emb|CAB40939.1| putative protein [Arabidopsis thaliana] gi|7267899|emb|CAB78241.1| putative protein [Arabidopsis thaliana]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/306 (69%), Positives = 249/306 (81%), Gaps = 9/306 (2%)

Query: 5   FYTLPKRLTVSPS---PPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVH 61
           F  LP RL   PS   P  LH ++  ++  L C KM + SS   LT SIT+PSQ ++PV 
Sbjct: 4   FTLLPSRLLAFPSRALPRRLHHHH--AKLILRC-KMSSSSSS--LTQSITLPSQPNEPVL 58

Query: 62  VVAAPGLSESDFRCAVESTLFK-QWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGF 120
           V A  G+S SDFR  ++   F   WL+NL+SE+GILA+G M LKQVLIQGVDMFGKRIGF
Sbjct: 59  VSATAGISSSDFRRVLDIRGFPLNWLRNLESESGILADGSMTLKQVLIQGVDMFGKRIGF 118

Query: 121 LKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPA 180
           LKFKADIF KETGQKVPGIVFARGPAVAVLILL+S+GETYA+LTEQVRVPTG+++LELPA
Sbjct: 119 LKFKADIFDKETGQKVPGIVFARGPAVAVLILLESDGETYAVLTEQVRVPTGKIVLELPA 178

Query: 181 GMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLF 240
           GMLDDDKGDFVGTAVREVEEE GI+LK EDM+DLTAFL PSTG + FPS GGCDEE+S+F
Sbjct: 179 GMLDDDKGDFVGTAVREVEEEIGIKLKKEDMVDLTAFLDPSTGYRIFPSPGGCDEEMSVF 238

Query: 241 LYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASKE 300
           LYRG+V+KE I QLQGKETGLR+HGE IKVR++PYRELWR T DAKVL +I LYEMA +E
Sbjct: 239 LYRGQVEKETIRQLQGKETGLREHGEFIKVRLIPYRELWRKTADAKVLMSIGLYEMAQRE 298

Query: 301 ELLPSR 306
            L+ S+
Sbjct: 299 GLVSSQ 304

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
TAIR|locus:2118061	309	NUDX14 "nudix hydrolase homolo	0.967	0.961	0.714	5.5e-109
DICTYBASE|DDB_G0271376	253	DDB_G0271376 [Dictyostelium di	0.742	0.901	0.415	1.2e-44
DICTYBASE|DDB_G0282603	199	DDB_G0282603 "NUDIX hydrolase	0.234	0.361	0.378	1.1e-07
WB|WBGene00003579	223	ndx-2 [Caenorhabditis elegans	0.319	0.439	0.287	1.6e-05
UNIPROTKB|Q48P28	215	PSPPH_0539 "Uncharacterized pr	0.524	0.748	0.301	2.4e-05
UNIPROTKB|Q9KPD5	208	VC_2435 "MutT/nudix family pro	0.530	0.783	0.290	4.9e-05
TIGR_CMR|VC_2435	208	VC_2435 "MutT/nudix family pro	0.530	0.783	0.290	4.9e-05
POMBASE|SPBP35G2.12	205	SPBP35G2.12 "ADP-ribose diphos	0.241	0.360	0.333	7.9e-05
TIGR_CMR|BA_4316	179	BA_4316 "mutT/nudix family pro	0.231	0.396	0.435	9e-05
TIGR_CMR|CPS_4180	214	CPS_4180 "ADP-ribose pyrophosp	0.491	0.705	0.273	0.00038

TAIR|locus:2118061 NUDX14 "nudix hydrolase homolog 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 1077 (384.2 bits), Expect = 5.5e-109, P = 5.5e-109
 Identities = 218/305 (71%), Positives = 254/305 (83%)

Query:     5 FYTLPKRLTVSPS---PPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVH 61
             F  LP RL   PS   P  LH ++  ++  L C KM   SS S LT SIT+PSQ ++PV 
Sbjct:     4 FTLLPSRLLAFPSRALPRRLHHHH--AKLILRC-KM--SSSSSSLTQSITLPSQPNEPVL 58

Query:    62 VVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFL 121
             V A  G+S SDFR A++S+LF+ WL+NL+SE+GILA+G M LKQVLIQGVDMFGKRIGFL
Sbjct:    59 VSATAGISSSDFRDAIDSSLFRNWLRNLESESGILADGSMTLKQVLIQGVDMFGKRIGFL 118

Query:   122 KFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAG 181
             KFKADIF KETGQKVPGIVFARGPAVAVLILL+S+GETYA+LTEQVRVPTG+++LELPAG
Sbjct:   119 KFKADIFDKETGQKVPGIVFARGPAVAVLILLESDGETYAVLTEQVRVPTGKIVLELPAG 178

Query:   182 MLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFL 241
             MLDDDKGDFVGTAVREVEEE GI+LK EDM+DLTAFL PSTG + FPS GGCDEE+S+FL
Sbjct:   179 MLDDDKGDFVGTAVREVEEEIGIKLKKEDMVDLTAFLDPSTGYRIFPSPGGCDEEMSVFL 238

Query:   242 YRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASKEE 301
             YRG+V+KE I QLQGKETGLR+HGE IKVR++PYRELWR T DAKVL +I LYEMA +E 
Sbjct:   239 YRGQVEKETIRQLQGKETGLREHGEFIKVRLIPYRELWRKTADAKVLMSIGLYEMAQREG 298

Query:   302 LLPSR 306
             L+ S+
Sbjct:   299 LVSSQ 303

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0019144 "ADP-sugar diphosphatase activity" evidence=IDA

GO:0080041 "ADP-ribose pyrophosphohydrolase activity" evidence=IDA

GO:0080042 "ADP-glucose pyrophosphohydrolase activity" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

DICTYBASE|DDB_G0271376 DDB_G0271376 [Dictyostelium discoideum (taxid:44689)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 99/238 (41%), Positives = 145/238 (60%)

Query:    69 SESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIF 128
             +E      + +  F +W+K ++ E  +  N       + +Q VDMFGK +GFLKFKAD+ 
Sbjct:    23 NEISLETVMSAPNFNKWIKKMELEKELKVNS------ISVQSVDMFGKNVGFLKFKADVV 76

Query:   129 CKETGQKVPGIVFARGPAVAVLILLDSE--GETYAILTEQVRVPTGRV-ILELPAGMLDD 185
               + G+ VPGI+F RG +VA+L++L S+  G+ Y++LT Q RVP       E+PAGMLD 
Sbjct:    77 TVKEGRVVPGIIFCRGGSVAILVILKSKETGKEYSVLTVQTRVPVASFQYSEIPAGMLDG 136

Query:   186 DKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGR 245
               G FVG A +E++EETG+++  + +IDLT   Y +     +PS GGCDE I LFL+R  
Sbjct:   137 S-GHFVGVAAKELKEETGLEVSEDKLIDLTKLAYGTEVDGVYPSPGGCDEFIRLFLFRET 195

Query:   246 VDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASKEELL 303
             +D+  I +LQ K TG  D  E I + +VP  +LW+ + D K L+A+ LYE   K+  L
Sbjct:   196 LDQSKIDELQHKLTGCLDENESITLNIVPLEDLWKKSHDGKTLSALYLYEKLLKDNKL 253

GO:0016787 "hydrolase activity" evidence=IEA

DICTYBASE|DDB_G0282603 DDB_G0282603 "NUDIX hydrolase family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 137 (53.3 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 28/74 (37%), Positives = 49/74 (66%)

Query:   147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQL 206
             V +L  +  +G+ Y I+  Q RVP   +++E PAG++D+D+ +FV +A+RE++EETG + 
Sbjct:    52 VDILATVKKDGKKYLIVVVQYRVPVDNLVIEFPAGLVDNDE-NFVNSAIRELKEETGYRT 110

Query:   207 KLEDMIDLTAFLYP 220
                D + LT+ + P
Sbjct:   111 T-PDKVLLTSPILP 123

GO:0016787 "hydrolase activity" evidence=IEA

WB|WBGene00003579 ndx-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 123 (48.4 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 29/101 (28%), Positives = 57/101 (56%)

Query:   104 KQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAIL 163
             ++V+  G  +  +++GF      +   ++  +    V A    V+++  +  +G+ Y +L
Sbjct:    34 QEVVWNGKWIQTRQVGFKTHTGQVGVWQSVHRNTKPVEASADGVSIIARVRKQGKLYIVL 93

Query:   164 TEQVRVPTGRVILELPAGMLDDDKGDFVG-TAVREVEEETG 203
              +Q R+P G++ LELPAG++D   G+     A+RE++EETG
Sbjct:    94 VKQYRIPCGKLCLELPAGLID--AGETAQQAAIRELKEETG 132

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|Q48P28 PSPPH_0539 "Uncharacterized protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 121 (47.7 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 57/189 (30%), Positives = 88/189 (46%)

Query:   117 RIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRV----PTG 172
             R+  L  + ++F     +++   +F R  AV VL   D++ +   +L EQ RV     T 
Sbjct:    36 RLDKLHVRHELFAGGMSKEISRELFVRHDAVCVLPY-DAKRDE-VVLIEQFRVGAMEKTS 93

Query:   173 RV-ILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAG 231
                ++EL AG++D D+      A RE EEE G+  +          L+P T  K+FPS G
Sbjct:    94 NPWLIELVAGLIDKDEQP-EEVAHREAEEEAGLVFRS---------LWPIT--KYFPSPG 141

Query:   232 GCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTA- 290
             G +E + L+L  G+   E      G   GL   GE I+V V  + +  +   D  +  A 
Sbjct:   142 GSNEFVHLYL--GQCSSEGA----GGIHGLESEGEDIRVTVWSFDDAMQAMKDGTIKNAS 195

Query:   291 --IALYEMA 297
               IAL  +A
Sbjct:   196 TIIALQWLA 204

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9KPD5 VC_2435 "MutT/nudix family protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 118 (46.6 bits), Expect = 4.9e-05, P = 4.9e-05
 Identities = 56/193 (29%), Positives = 92/193 (47%)

Query:   100 DMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGET 159
             ++L K+ L +G   F + + + +FK   F     + V   +F RG A A+L   D   + 
Sbjct:    17 EILNKETLFKG---FFRMVKY-RFKHKRFAGGWSEPVEREMFERGHAAAMLPY-DPIRDQ 71

Query:   160 YAILTEQVRVPTGRVI----LELPAGMLDDDKGDFVGTAVREVEEETGIQL-KLEDMIDL 214
               I+ EQ+RV          LE+ AG++D D+        RE  EE G+ + ++E    +
Sbjct:    72 VVII-EQIRVGALEHAQPWQLEIVAGVIDTDESA-EQVVRREAVEEAGLTVGRIEK---I 126

Query:   215 TAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVP 274
             T++         +PS+GGC E++ +F+  G VD     Q  G   GL   GE IKV V+ 
Sbjct:   127 TSY---------YPSSGGCSEKLDVFI--GEVD---CSQAGGIH-GLDCEGEDIKVHVMS 171

Query:   275 YRELWRTTPDAKV 287
               E ++   D ++
Sbjct:   172 RTEAYQLVKDGRI 184

GO:0003824 "catalytic activity" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

TIGR_CMR|VC_2435 VC_2435 "MutT/nudix family protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 118 (46.6 bits), Expect = 4.9e-05, P = 4.9e-05
 Identities = 56/193 (29%), Positives = 92/193 (47%)

Query:   100 DMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGET 159
             ++L K+ L +G   F + + + +FK   F     + V   +F RG A A+L   D   + 
Sbjct:    17 EILNKETLFKG---FFRMVKY-RFKHKRFAGGWSEPVEREMFERGHAAAMLPY-DPIRDQ 71

Query:   160 YAILTEQVRVPTGRVI----LELPAGMLDDDKGDFVGTAVREVEEETGIQL-KLEDMIDL 214
               I+ EQ+RV          LE+ AG++D D+        RE  EE G+ + ++E    +
Sbjct:    72 VVII-EQIRVGALEHAQPWQLEIVAGVIDTDESA-EQVVRREAVEEAGLTVGRIEK---I 126

Query:   215 TAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVP 274
             T++         +PS+GGC E++ +F+  G VD     Q  G   GL   GE IKV V+ 
Sbjct:   127 TSY---------YPSSGGCSEKLDVFI--GEVD---CSQAGGIH-GLDCEGEDIKVHVMS 171

Query:   275 YRELWRTTPDAKV 287
               E ++   D ++
Sbjct:   172 RTEAYQLVKDGRI 184

GO:0003824 "catalytic activity" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

POMBASE|SPBP35G2.12 SPBP35G2.12 "ADP-ribose diphosphatase, NudF subfamily (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 116 (45.9 bits), Expect = 7.9e-05, P = 7.9e-05
 Identities = 26/78 (33%), Positives = 44/78 (56%)

Query:   146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQ 205
             AVA+L ++  +G  + +  +Q R P G+  +E+PAG++D  K      A+RE+ EETG  
Sbjct:    55 AVAILAIVPIDGSPHVLCQKQFRPPIGKFCIEIPAGLVDS-KESCEDAAIRELREETGY- 112

Query:   206 LKLEDMIDLTAFLYPSTG 223
               +  ++D T  +Y   G
Sbjct:   113 --VGTVMDSTTVMYNDPG 128

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009191 "ribonucleoside diphosphate catabolic process" evidence=IC

GO:0047631 "ADP-ribose diphosphatase activity" evidence=ISO

TIGR_CMR|BA_4316 BA_4316 "mutT/nudix family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 113 (44.8 bits), Expect = 9.0e-05, P = 9.0e-05
 Identities = 34/78 (43%), Positives = 48/78 (61%)

Query:   146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQ 205
             AVA++ + D EG+   +L EQ R    + I+E+PAG L+  +   V TAVRE+EEETG  
Sbjct:    45 AVAIIAITD-EGKI--VLVEQYRKALEKAIIEIPAGKLEPGEKPEV-TAVRELEEETGYV 100

Query:   206 LKLEDMIDLTAFLYPSTG 223
                E+M  +T+F Y S G
Sbjct:   101 C--ENMELITSF-YTSPG 115

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

TIGR_CMR|CPS_4180 CPS_4180 "ADP-ribose pyrophosphatase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 111 (44.1 bits), Expect = 0.00038, P = 0.00038
 Identities = 47/172 (27%), Positives = 76/172 (44%)

Query:   127 IFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRV-----ILELPAG 181
             +F  E  Q     VF RG AV V+   D++ +   +L EQ R    R      +LE  AG
Sbjct:    43 LFSGEQSQLFTREVFERGDAVVVMPY-DAKQDK-VLLIEQFRPGALRGDDSPWLLEFIAG 100

Query:   182 MLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFL 241
             M D+++   +  A+RE +EET + L   D++ +  +L          S GG  E I L+L
Sbjct:   101 MFDENETP-IEVAIREAKEETNLTLCPNDLVPMMQYL---------SSPGGMSERIHLYL 150

Query:   242 YRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIAL 293
                  + +++    G   GL +  E I + +V   +      D K+  A  +
Sbjct:   151 --AHFNSDLVTD--GAIHGLPEENEDILLHIVSRTQALALLTDGKITNAATI 198


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      307       307    0.0010  115 3  11 22  0.39    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  198 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.08u 0.17s 24.25t   Elapsed:  00:00:01
  Total cpu time:  24.08u 0.17s 24.25t   Elapsed:  00:00:01
  Start:  Fri May 10 13:10:29 2013   End:  Fri May 10 13:10:30 2013

GO:0047631 "ADP-ribose diphosphatase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SZ63	NUD14_ARATH	3, ., 6, ., 1, ., 2, 1	0.7114	0.9674	0.9611	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.976
3rd Layer	3.6.1.21	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	307
PLN03143	291	PLN03143, PLN03143, nudix hydrolase; Provisional	0.0
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	2e-28
pfam00293	133	pfam00293, NUDIX, NUDIX domain	6e-13
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	4e-10
TIGR00052	185	TIGR00052, TIGR00052, nudix-type nucleoside diphos	2e-06
PRK10729	202	PRK10729, nudF, ADP-ribose pyrophosphatase NudF; P	4e-06
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	6e-06
cd03426	157	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse)	4e-05
cd04676	129	cd04676, Nudix_Hydrolase_17, Members of the Nudix	4e-04
cd04692	144	cd04692, Nudix_Hydrolase_33, Members of the Nudix	7e-04
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	0.002

>gnl|CDD|215602 PLN03143, PLN03143, nudix hydrolase; Provisional

 Score =  511 bits (1318), Expect = 0.0
 Identities = 231/301 (76%), Positives = 246/301 (81%), Gaps = 13/301 (4%)

Query: 5   FYTLPKRLTVSPSPPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVA 64
           F  LP R    PS                 S     SS SPLTHSIT+P Q  QPV VVA
Sbjct: 2   FTLLPSRPLALPSR----------MAHKEASSS---SSSSPLTHSITLPGQPGQPVLVVA 48

Query: 65  APGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFK 124
           APG+S SDFR A++S+LF+QWLKNLQSE+GILA G M LKQVLIQGVDMFGKRIGFLKFK
Sbjct: 49  APGISSSDFRKAIDSSLFRQWLKNLQSESGILAYGSMSLKQVLIQGVDMFGKRIGFLKFK 108

Query: 125 ADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLD 184
           ADI  KETGQKVPGIVFARGPAVAVLILL+SEGETYA+LTEQVRVP G+ +LELPAGMLD
Sbjct: 109 ADIIDKETGQKVPGIVFARGPAVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLD 168

Query: 185 DDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRG 244
           DDKGDFVGTAVREVEEETGI+LKLEDM+DLTAFL PSTGC+ FPS GGCDEEISLFLYRG
Sbjct: 169 DDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGCDEEISLFLYRG 228

Query: 245 RVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASKEELLP 304
            VDKE I QLQGKETGLRDHGELIKV VVPYRELWR T DAKVL AIALYEMA +E LLP
Sbjct: 229 HVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTADAKVLMAIALYEMAKREGLLP 288

Query: 305 S 305
           S
Sbjct: 289 S 289

Length = 291

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score =  106 bits (266), Expect = 2e-28
 Identities = 55/159 (34%), Positives = 68/159 (42%), Gaps = 29/159 (18%)

Query: 143 RGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEET 202
              AVAVL   D       +L  Q R P G  +LELPAG++D  + D    A RE+EEET
Sbjct: 1   HPDAVAVLPYDDDG---KVVLVRQYRPPVGGWLLELPAGLIDPGE-DPEEAARRELEEET 56

Query: 203 GIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLR 262
           G   +  D+  L           F+PS G  DE I LFL            L   E GL 
Sbjct: 57  G--YEAGDLEKLG---------SFYPSPGFSDERIHLFLAED---------LSPGEEGLL 96

Query: 263 DHGELIKVRVVPYRELWR-----TTPDAKVLTAIALYEM 296
           D GE I+V +VP  E           D   L A+ L+  
Sbjct: 97  DEGEDIEVVLVPLDEALELLADGEIIDDATLIALLLWLA 135

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 64.4 bits (157), Expect = 6e-13
 Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 22/155 (14%)

Query: 143 RGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEET 202
           R  AV V +LL+ +GE   +L  + R P    + ELP G ++  +      AVRE+EEET
Sbjct: 1   RRRAVGV-VLLNEDGE--VLLVRRSRPPVFPGLWELPGGKVEPGE-SPEEAAVRELEEET 56

Query: 203 GIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLR 262
           G+++ L  ++ +  +  P             D    + ++   +         G+     
Sbjct: 57  GLRVLLLLLLGVLEYPAPGR-----------DGGEHVHVFLAELLG-------GEPEPQP 98

Query: 263 DHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMA 297
           +  E+ +VR VP  EL       ++   IAL    
Sbjct: 99  NEDEVSEVRWVPLEELLELLLAGEIREVIALLLAL 133

Length = 133

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 57.6 bits (138), Expect = 4e-10
 Identities = 39/136 (28%), Positives = 53/136 (38%), Gaps = 14/136 (10%)

Query: 143 RGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEET 202
           R  AVAVL+  D  GE   +L  Q R   G    ELP G ++  +      A RE+EEET
Sbjct: 10  RDVAVAVLVGRDGPGE---VLLAQRRDDGGL--WELPGGKVEPGEELPEEAAARELEEET 64

Query: 203 GIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLR 262
           G+++K E +  L  F              G  E    F+        + +     E    
Sbjct: 65  GLRVKDERLELLGEFPPSPGDGSSV----GGREHRVFFVAEVDDSLAVAI-----EGLSA 115

Query: 263 DHGELIKVRVVPYREL 278
              EL  +  VP  EL
Sbjct: 116 PSEELEDLEWVPLDEL 131

Length = 161

>gnl|CDD|129162 TIGR00052, TIGR00052, nudix-type nucleoside diphosphatase, YffH/AdpP family

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 45/139 (32%), Positives = 62/139 (44%), Gaps = 25/139 (17%)

Query: 140 VFARGPAVAVLILLDSEGETYAILTEQVRV-----PTGRVILELPAGMLDDDKGDFVGTA 194
           ++ RG A AVL L D + +T  +L EQ R+          +LEL AGM++  +      A
Sbjct: 40  IYDRGNAAAVL-LYDPKKDTV-VLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPED-VA 96

Query: 195 VREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQL 254
            RE  EE G Q+K     +L   L       F+ S GG  E I LF+    VD     Q 
Sbjct: 97  RREAIEEAGYQVK-----NLRKLL------SFYMSPGGVTELIHLFI--AEVDDN---QA 140

Query: 255 QGKETGLRDHGELIKVRVV 273
            G   G  D  E+  + +V
Sbjct: 141 AGIG-GGADEEEIEVLHLV 158

Members of this family include proteins of about 200 amino acids, including the recently characterized nudix hydrolase YffH, shows to be highly active as a GDP-mannose pyrophosphatase. It also includes the C-terminal half of a 361-amino acid protein, TrgB from Rhodobacter sphaeroides, shown experimentally to help confer tellurite resistance. This model also hits a region near the C-terminus of a 1092-amino acid protein of C. elegans [Unknown function, Enzymes of unknown specificity]. Length = 185

>gnl|CDD|182682 PRK10729, nudF, ADP-ribose pyrophosphatase NudF; Provisional

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 46/162 (28%), Positives = 69/162 (42%), Gaps = 35/162 (21%)

Query: 122 KFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRV-----IL 176
           +F+  +F  E   +V   +F RG A AVL+  D   +   +L EQ+R+          +L
Sbjct: 27  RFRHRLFNGEMSGEVRREIFERGHA-AVLLPFDPVRDE-VVLIEQIRIAAYDTSETPWLL 84

Query: 177 ELPAGMLDDDKGDFV-GTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK----FFPSAG 231
           E+ AGM+++  G+ V   A RE  EE G+ +                  K    +  S G
Sbjct: 85  EMVAGMIEE--GESVEDVARREAIEEAGLIVGR---------------TKPVLSYLASPG 127

Query: 232 GCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVV 273
           G  E  S+ +  G VD      +     GL D  E I+V VV
Sbjct: 128 GTSERSSIMV--GEVDATTASGIH----GLADENEDIRVHVV 163

Length = 202

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 44.4 bits (105), Expect = 6e-06
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 16/113 (14%)

Query: 147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQL 206
               ++LD +G    +L  +   P G    ELP G ++         A+REV EETG+ +
Sbjct: 2   AVGAVILDEDGRV--LLVRRADSPGGL--WELPGGGVEPG-ETLEEAAIREVREETGLDV 56

Query: 207 KLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKET 259
            +  ++ +     P  G               +F++  R+       L   E 
Sbjct: 57  DVLRLLGVYEVESPDEGEHAV-----------VFVFLARLVGGEPTLLPPDEI 98

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|239518 cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 148 AVLILL-DSEGETYAILTE---QVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETG 203
           AVL+LL + EGE   +LT+    +R   G+V    P G +D    D V TA+RE EEE G
Sbjct: 4   AVLVLLVEREGELRVLLTKRASHLRSHPGQV--AFPGGKVDPGDEDPVATALREAEEEIG 61

Query: 204 I 204
           +
Sbjct: 62  L 62

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules. Length = 157

>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 10/55 (18%)

Query: 167 VRVPTGRVIL---------ELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMI 212
           VR   GRV+L          LP G ++  +     TAVREV EETG+ +++  ++
Sbjct: 9   VRDDEGRVLLIRRSDNGLWALPGGAVEPGE-SPADTAVREVREETGLDVEVTGLV 62

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240048 cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 21/106 (19%)

Query: 178 LPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEI 237
           + AG         +   +RE+EEE G+ +  +D+I L  F       ++       D E 
Sbjct: 43  ILAGE------TPLEDGIRELEEELGLDVSADDLIPLGTFKI-----EYDHIGKLIDREF 91

Query: 238 S-LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT 282
             ++LY  +V  E    LQ KE       E+  V ++P  E     
Sbjct: 92  HHVYLYELKVPLE-EFTLQ-KE-------EVAGVVLIPLDEFAELL 128

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 144

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 24/104 (23%)

Query: 178 LPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEI 237
           LP G L+         AVREVEEETGI+ ++ D +    + + S+G              
Sbjct: 31  LPKGKLEP-GETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSG-------------- 75

Query: 238 SLFLYRGRVDKEI---IMQLQGKETGLRDHGELIKVRVVPYREL 278
                  RV K +   +M+  G E   +   E+ +VR +P  E 
Sbjct: 76  ------KRVHKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEA 113

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	307
PLN03143	291	nudix hydrolase; Provisional	100.0
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.97
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.96
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	99.95
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.95
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.95
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.81
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.73
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.72
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.72
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.71
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.69
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.68
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.68
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.68
PRK10707	190	putative NUDIX hydrolase; Provisional	99.66
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.66
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.66
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.66
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.65
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.65
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.64
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.64
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.63
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.63
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.62
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.62
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.62
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.61
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.6
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.6
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.59
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.59
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.59
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.59
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.59
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.58
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.58
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.58
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.58
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.58
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.58
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.58
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.57
PLN02325	144	nudix hydrolase	99.57
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.57
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.55
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.55
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.54
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.54
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.54
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.53
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.53
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.52
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.52
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.51
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.51
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.51
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.5
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.5
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.49
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.47
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.46
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.45
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.45
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.44
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.43
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.41
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.41
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.39
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.39
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.39
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.39
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.38
PLN02709	222	nudix hydrolase	99.34
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.34
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.31
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	99.2
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.19
PRK08999	312	hypothetical protein; Provisional	99.18
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	99.16
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.13
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.07
PLN02791	770	Nudix hydrolase homolog	98.98
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	98.97
PLN02552	247	isopentenyl-diphosphate delta-isomerase	98.84
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	98.76
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.66
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	98.57
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	98.24
PLN02839	372	nudix hydrolase	98.1
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	97.95
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	97.58
KOG4195	275	consensus Transient receptor potential-related cha	96.06
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	95.95
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	94.32
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	94.01
COG4112	203	Predicted phosphoesterase (MutT family) [General f	93.96
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	92.08
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	84.08
KOG4313	306	consensus Thiamine pyrophosphokinase [Nucleotide t	83.27

>PLN03143 nudix hydrolase; Provisional

Probab=100.00  E-value=9.8e-62  Score=452.37  Aligned_cols=289  Identities=79%  Similarity=1.185  Sum_probs=253.2

Q ss_pred             ccccccceeecCCCCccccccccccceeeeeecCCCCCCCCceeeEEeCCCCCCCeEEEeCCCCCHHHHHhhhcChhHHH
Q 021805            5 FYTLPKRLTVSPSPPLLHFNYRSSRTRLVCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQ   84 (307)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~   84 (307)
                      ||.||+|..+.|++           ...++++|+++++  ++++|||||++++++|+|+++||+|++|+.++++|++|++
T Consensus         2 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (291)
T PLN03143          2 FTLLPSRPLALPSR-----------MAHKEASSSSSSS--PLTHSITLPGQPGQPVLVVAAPGISSSDFRKAIDSSLFRQ   68 (291)
T ss_pred             CccCCCcccccCCC-----------cceehhccCCCCC--CceeEEEccCCCCCceeEecCCCCCHHHHHhHhcChHHHH
Confidence            45566665554443           1334445555555  7999999999989999999999999999999999999999


Q ss_pred             HHHHhhhhcccccCCCeeeEEEEEeeEeeecccccEEEEEEEEEEcCCCcEEeEEEEEeCCEEEEEEEEecCCceEEEEE
Q 021805           85 WLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILT  164 (307)
Q Consensus        85 w~~~~~~~~~~~~~~~~~L~~v~i~~~~~fg~r~~~i~~~~d~~~~~~G~~~~~~v~~r~~aVaVl~il~~~g~~~VLLv  164 (307)
                      |+++++++++++++++|.||+|+||++|+||+|.||+++++|.++.+||+.++++|+.|+++|+|++++.+++++++||+
T Consensus        69 w~~~~~~~~~~~~~~~~~~~~~~~~~vd~fg~~~gflkv~~d~~~l~~G~~~~~~v~~rg~aVaVL~~l~~~ge~~VlLV  148 (291)
T PLN03143         69 WLKNLQSESGILAYGSMSLKQVLIQGVDMFGKRIGFLKFKADIIDKETGQKVPGIVFARGPAVAVLILLESEGETYAVLT  148 (291)
T ss_pred             HHHHhhhccccccCCCceeEEEEEEEEecccCceeEEEEEEEEEECCCCCEeeEEEEEcCCeEEEEEEEeCCCCEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999998766666789999


Q ss_pred             EeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEE
Q 021805          165 EQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRG  244 (307)
Q Consensus       165 rQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~  244 (307)
                      +|+|+|.+.+.||||||++|+++|++.+||+||++|||||.+...++..++.+.++.+...+|++||++++.+++|++..
T Consensus       149 rQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~dE~i~Lfla~~  228 (291)
T PLN03143        149 EQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGCDEEISLFLYRG  228 (291)
T ss_pred             EeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCccCCeEEEEEEcc
Confidence            99999999999999999999744899999999999999999876778888655444444579999999999999999988


Q ss_pred             echhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhHHHHHHHHHHHHhcCCCCCC
Q 021805          245 RVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASKEELLPSR  306 (307)
Q Consensus       245 ~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ktl~al~L~~~~~~~g~lp~~  306 (307)
                      ..+...+..+++..++..+++|.|+++|++++|+|++++|+|+++|+++|+.++++|++|++
T Consensus       229 ~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD~ktl~al~l~~~~k~~g~~~~~  290 (291)
T PLN03143        229 HVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTADAKVLMAIALYEMAKREGLLPSS  290 (291)
T ss_pred             ccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCC
Confidence            77666555555655667789999999999999999999999999999999999999999986

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.97  E-value=4.8e-29  Score=221.00  Aligned_cols=167  Identities=21%  Similarity=0.328  Sum_probs=134.4

Q ss_pred             EEEEeeEeeecccccEEEEEEEEE--EcCCCcE--EeEEEEEeCCEEEEEEEEecCCceEEEEEEeeecCC------CCe
Q 021805          105 QVLIQGVDMFGKRIGFLKFKADIF--CKETGQK--VPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPT------GRV  174 (307)
Q Consensus       105 ~v~i~~~~~fg~r~~~i~~~~d~~--~~~~G~~--~~~~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~------g~~  174 (307)
                      +|+|.+...+.  .+|+++..+.+  ..+||..  ..+.++.++++|+|+++.  ++.+++||++|||+|.      +++
T Consensus         4 ~~~~~~~~~~~--~~~~~v~~~~~~~~~pdG~~~~~~r~vv~~~~~v~Vl~~~--~~~~~vvLvrQyR~~v~~~~~~~~~   79 (191)
T PRK15009          4 QITLIKDKILS--DNYFTLHNITYDLTRKDGEVIRHKREVYDRGNGATILLYN--AKKKTVVLIRQFRVATWVNGNESGQ   79 (191)
T ss_pred             ceEEEEEEEEe--CCeEEEEEEEEEEECCCCCccceEEEEEEECCEEEEEEEE--CCCCEEEEEEcccccccccCCCCce
Confidence            46667777775  68999998774  5699984  567899999999999873  3334799999999998      889


Q ss_pred             EEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHh
Q 021805          175 ILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQL  254 (307)
Q Consensus       175 ~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~  254 (307)
                      .||+|||.+|+  +++++||+||++||||+.+  .++..++.         +|++||.+++.+|+|+++......     
T Consensus        80 ~lElPAG~vd~--~~p~~aA~REL~EETGy~a--~~~~~l~~---------~~~spG~s~e~~~lf~a~~~~~~~-----  141 (191)
T PRK15009         80 LIETCAGLLDN--DEPEVCIRKEAIEETGYEV--GEVRKLFE---------LYMSPGGVTELIHFFIAEYSDSQR-----  141 (191)
T ss_pred             EEEEeccccCC--CCHHHHHHHHHHHhhCCcc--ceEEEeeE---------EEcCCcccCcEEEEEEEEECchhc-----
Confidence            99999999996  4699999999999999998  47888875         899999999999999998632111     


Q ss_pred             ccCCCccCCCCceEEEEEEchhhHhhccC-----ChhHHHHHHHHH
Q 021805          255 QGKETGLRDHGELIKVRVVPYRELWRTTP-----DAKVLTAIALYE  295 (307)
Q Consensus       255 ~g~~~g~~~~~E~i~v~wvpleel~~~i~-----D~ktl~al~L~~  295 (307)
                      .+  .+..+++|.|++.|+|++|+.+++.     |+++++|+++++
T Consensus       142 ~~--~~~~de~E~iev~~~~~~e~~~~i~~G~i~da~ti~al~~~~  185 (191)
T PRK15009        142 AN--AGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLLLNYLQ  185 (191)
T ss_pred             cc--CCCCCCCceEEEEEEcHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            01  1123688999999999999999874     889998874433

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.96  E-value=5.7e-28  Score=215.88  Aligned_cols=165  Identities=25%  Similarity=0.366  Sum_probs=130.1

Q ss_pred             EeeEeeecccccEEEEEEEEEE--cCCCc---EEeEEEEEeCCEEEEEEEEecCCceEEEEEEeeecCCC-----CeEEE
Q 021805          108 IQGVDMFGKRIGFLKFKADIFC--KETGQ---KVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTG-----RVILE  177 (307)
Q Consensus       108 i~~~~~fg~r~~~i~~~~d~~~--~~~G~---~~~~~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g-----~~~wE  177 (307)
                      +++..+|.   +|+++..+.+.  .++|.   ...+.++.++++|+|+++..  ..++|||++|||+|.+     ++.||
T Consensus        11 ~~~~~v~~---~~~~v~~~~~~~~~~~G~~~~~~~~~vv~~~~~V~il~~~~--~~~~vlLvrQyR~~~~~~~~~~~~lE   85 (202)
T PRK10729         11 IARETLYR---GFFSLDLYRFRHRLFNGEMSGEVRREIFERGHAAVLLPFDP--VRDEVVLIEQIRIAAYDTSETPWLLE   85 (202)
T ss_pred             EEEEEEEc---CeEEEEEEEEEEEecCCccccEEeEEEEEcCCeEEEEEEEC--CCCEEEEEEeeecccccCCCCCeEEE
Confidence            45556665   47767654443  46887   56788999999999998842  2237999999999985     48999


Q ss_pred             ccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccC
Q 021805          178 LPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGK  257 (307)
Q Consensus       178 lPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~  257 (307)
                      +|||++|+| |++.+||+|||.||||+.+  .++..++.         +|++||.+++.+++|+++......      ..
T Consensus        86 ~PAG~vd~g-E~p~~aA~REL~EETGy~a--~~~~~l~~---------~~~spg~~~e~~~~fla~~~~~~~------~~  147 (202)
T PRK10729         86 MVAGMIEEG-ESVEDVARREAIEEAGLIV--GRTKPVLS---------YLASPGGTSERSSIMVGEVDATTA------SG  147 (202)
T ss_pred             ccceEcCCC-CCHHHHHHHHHHHHhCcee--eEEEEEEE---------EEcCCCcCceEEEEEEEEEcchhc------cc
Confidence            999999998 9999999999999999998  46777764         899999999999999998533211      11


Q ss_pred             CCccCCCCceEEEEEEchhhHhhccC-----ChhHHHHHHHHH
Q 021805          258 ETGLRDHGELIKVRVVPYRELWRTTP-----DAKVLTAIALYE  295 (307)
Q Consensus       258 ~~g~~~~~E~i~v~wvpleel~~~i~-----D~ktl~al~L~~  295 (307)
                      ..+..+++|.|++.|+|++++.+++.     |+++++|++++.
T Consensus       148 ~~~~~de~E~i~v~~~~~~e~~~~~~~G~i~d~~ti~al~~~~  190 (202)
T PRK10729        148 IHGLADENEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWLQ  190 (202)
T ss_pred             CCCCCCCCCceEEEEEcHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            12345889999999999999998875     889999875544

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=99.95  E-value=1.6e-27  Score=206.96  Aligned_cols=190  Identities=37%  Similarity=0.537  Sum_probs=140.4

Q ss_pred             eEEeCCCCCCCeEEEeCCCCCHHHHHhhhcChhHHHHHHHhhhhcccccCCCeeeEEEEEeeEeeecccccEEEEEEEEE
Q 021805           49 SITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKADIF  128 (307)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~w~~~~~~~~~~~~~~~~~L~~v~i~~~~~fg~r~~~i~~~~d~~  128 (307)
                      ++++|++.+.|+-++.....  .++.   +-..       +.     +.-.|..|++|.++  |.+|+...|        
T Consensus         8 ~i~l~sq~ne~~~ss~~~kp--~~i~---~~~~-------ie-----~~~kWi~Lkkv~~q--D~~GKir~w--------   60 (225)
T KOG3041|consen    8 SITLPSQPNEPTMSSATGKP--SKII---EVED-------IE-----SDGKWIRLKKVLYQ--DPTGKIRDW--------   60 (225)
T ss_pred             eeeccCCCCCceeecccCCc--hhee---eeec-------cc-----CCccEEEEEEEEEE--cCCCceeee--------
Confidence            99999987767666655433  1221   1111       10     34569999999998  888863333        


Q ss_pred             EcCCCcEEeEEEEEeCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccc
Q 021805          129 CKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKL  208 (307)
Q Consensus       129 ~~~~G~~~~~~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~  208 (307)
                        ..++..++ ++.++++|+||+++..+|+.++||++|+|+|.|+.++|+|||++|.| |++.+||+|||+|||||..+ 
T Consensus        61 --es~~Rttr-~ea~~dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~g-e~~~~aAiREl~EEtGy~gk-  135 (225)
T KOG3041|consen   61 --ESVQRTTR-VEARADGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDG-EDFEGAAIRELEEETGYKGK-  135 (225)
T ss_pred             --ehheeccc-ccccCCeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCC-CchHHHHHHHHHHHhCccce-
Confidence              23444555 78899999999999989999999999999999999999999999998 99999999999999999954 


Q ss_pred             cceeeccccccCCCCceeecCCCccceEEEEEE--EEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChh
Q 021805          209 EDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFL--YRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAK  286 (307)
Q Consensus       209 ~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~--~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~k  286 (307)
                        +....        ..+|.+||.++...++.+  +.+..+ ++.    .+.++ .+++|.|+++.+++.++|+.+.+.+
T Consensus       136 --v~~~s--------~~~f~DPGltn~~~~iv~v~idg~~p-Enq----rp~q~-ledgEfIev~~i~~~~L~~~~~~l~  199 (225)
T KOG3041|consen  136 --VDMVS--------PTVFLDPGLTNCNLCIVVVDIDGDVP-ENQ----RPVQQ-LEDGEFIEVFLIPLSELWRELADLD  199 (225)
T ss_pred             --eeecc--------ccEEcCCCCCCCceEEEEEEecCCCc-ccc----Ccccc-CCCCceEEEEEeeHHHHHHHHHhhh
Confidence              22222        248888988655555544  444333 323    33343 4789999999999999999887444

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.95  E-value=1.1e-25  Score=198.09  Aligned_cols=162  Identities=17%  Similarity=0.151  Sum_probs=128.8

Q ss_pred             eeEeeecccccEEEEEEEEEEcCCCcEEeEEEEE--eCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCC
Q 021805          109 QGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFA--RGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDD  186 (307)
Q Consensus       109 ~~~~~fg~r~~~i~~~~d~~~~~~G~~~~~~v~~--r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g  186 (307)
                      .+..+|.  ++|+++..+.+..++|+.....++.  ++++|+|+++. ++  ++|||++|+|.+.+.+.||||||.+|+|
T Consensus        12 ~~~~v~~--~~~~~v~~~~~~~~~G~~~~~~~v~~~~~~~v~v~~~~-~~--~~vlLvrq~r~~~~~~~~elPaG~ve~g   86 (185)
T PRK11762         12 NRETVAK--SRLFRVESVDLEFSNGVERVYERMRPSGRGAVMIVPIL-DD--DTLLLIREYAAGTERYELGFPKGLIDPG   86 (185)
T ss_pred             eEEEEEe--CCEEEEEEEEEEcCCCCEEEEEEEecCCCCEEEEEEEe-CC--CEEEEEEeecCCCCCcEEEccceeCCCC
Confidence            3344444  5899999988888999876655554  44678888764 33  3699999999999999999999999998


Q ss_pred             CCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCc
Q 021805          187 KGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGE  266 (307)
Q Consensus       187 ~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E  266 (307)
                       |++.+||+||++||||+++  ..+..++.         ++++||.+++.+++|++......          ....++.|
T Consensus        87 -E~~~~aA~REl~EEtG~~~--~~l~~l~~---------~~~~~~~~~~~~~~f~a~~~~~~----------~~~~~e~E  144 (185)
T PRK11762         87 -ETPLEAANRELKEEVGFGA--RQLTFLKE---------LSLAPSYFSSKMNIVLAEDLYPE----------RLEGDEPE  144 (185)
T ss_pred             -CCHHHHHHHHHHHHHCCCC--cceEEEEE---------EecCCCccCcEEEEEEEEccccc----------cCCCCCCc
Confidence             9999999999999999998  46777764         78899999999999998753221          11236788


Q ss_pred             eEEEEEEchhhHhhccC-----ChhHHHHHHHHHHH
Q 021805          267 LIKVRVVPYRELWRTTP-----DAKVLTAIALYEMA  297 (307)
Q Consensus       267 ~i~v~wvpleel~~~i~-----D~ktl~al~L~~~~  297 (307)
                      .+++.|+|++++.+++.     |+++++|+.++..+
T Consensus       145 ~i~~~~~~~~e~~~~~~~g~i~d~~ti~al~~~~~~  180 (185)
T PRK11762        145 PLEVVRWPLADLDELLARPDFSEARSVAALFLAREW  180 (185)
T ss_pred             eeEEEEEcHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence            99999999999988864     88899888655533

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.95  E-value=3.9e-26  Score=201.48  Aligned_cols=165  Identities=26%  Similarity=0.346  Sum_probs=127.8

Q ss_pred             EeeEeeecccccEEEEEEEE--EEcCCC--cEEeEEEEEeCCEEEEEEEEecCCceEEEEEEeeecCC-----CCeEEEc
Q 021805          108 IQGVDMFGKRIGFLKFKADI--FCKETG--QKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPT-----GRVILEL  178 (307)
Q Consensus       108 i~~~~~fg~r~~~i~~~~d~--~~~~~G--~~~~~~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~-----g~~~wEl  178 (307)
                      +.+...|.  +.|+.++.+.  ...++|  ....+.++.++++|+|+++.  ++.++|||++|+|+|.     +.+.||+
T Consensus         6 l~~~~v~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~v~vl~~~--~~~~~vlLvrq~R~~~~~~~~~~~~lel   81 (185)
T TIGR00052         6 IIKDTLYS--GFFSLLHNIFYHRLFKGGESIRVTREIYDRGNAAAVLLYD--PKKDTVVLIEQFRIAAYVNGEEPWLLEL   81 (185)
T ss_pred             EEEEEEec--CCcEEEEEEEEEEeeCCCCCceEEEEEEEcCCeEEEEEEE--CCCCEEEEEECceeeeeecCCcceEEEE
Confidence            34455554  5677776533  334455  56788999999999999874  3334799999999988     6789999


Q ss_pred             cceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCC
Q 021805          179 PAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKE  258 (307)
Q Consensus       179 PaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~  258 (307)
                      |||++|+| |++++||+||++||||+.+.  .+..++.         +|++||.+++.+++|+++......     .+. 
T Consensus        82 PaG~ve~g-E~~~~aA~REl~EEtG~~~~--~~~~~~~---------~~~~~g~~~~~~~~f~a~~~~~~~-----~~~-  143 (185)
T TIGR00052        82 SAGMVEKG-ESPEDVARREAIEEAGYQVK--NLRKLLS---------FYSSPGGVTELIHLFIAEVDDNQA-----AGI-  143 (185)
T ss_pred             CcEecCCC-CCHHHHHHHHccccccceec--ceEEEEE---------EEcCCCCCcEEEEEEEEEEchhhc-----CCC-
Confidence            99999998 99999999999999999984  6777764         899999999999999987532211     111 


Q ss_pred             CccCCCCceEEEEEEchhhHhhccC-----ChhHHHHHHHHH
Q 021805          259 TGLRDHGELIKVRVVPYRELWRTTP-----DAKVLTAIALYE  295 (307)
Q Consensus       259 ~g~~~~~E~i~v~wvpleel~~~i~-----D~ktl~al~L~~  295 (307)
                      .+ .+++|.+++.|++++++.+++.     |+++++|+++|+
T Consensus       144 ~~-~~~~E~ie~~~~~~~e~~~~~~~G~i~d~~t~~al~~~~  184 (185)
T TIGR00052       144 GG-GADEEEIEVLHLVFSQALQWIKEGKIDNGKTVILLQWLQ  184 (185)
T ss_pred             CC-CCCccceEEEEeCHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence            12 2567789999999999998874     889999886664

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.81  E-value=5.7e-19  Score=146.82  Aligned_cols=120  Identities=42%  Similarity=0.548  Sum_probs=90.5

Q ss_pred             eCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCC
Q 021805          143 RGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPST  222 (307)
Q Consensus       143 r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~  222 (307)
                      |.++|+++++.  +. +++||++|+|.+.++..|++|||++|.| |++.+||+||++||||+++.  .+..++.      
T Consensus         1 ~~~~v~v~~~~--~~-~~iLl~~~~~~~~~~~~w~~PgG~ve~g-Es~~~aa~RE~~EE~Gl~~~--~~~~~~~------   68 (137)
T cd03424           1 HPDAVAVLPYD--DD-GKVVLVRQYRPPVGGWLLELPAGLIDPG-EDPEEAARRELEEETGYEAG--DLEKLGS------   68 (137)
T ss_pred             CCCEEEEEEEc--CC-CeEEEEEeeecCCCCEEEEeCCccCCCC-CCHHHHHHHHHHHHHCCCcc--ceEEEee------
Confidence            45677777762  22 4799999999887777999999999998 99999999999999999984  5666654      


Q ss_pred             CceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChh
Q 021805          223 GCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAK  286 (307)
Q Consensus       223 ~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~k  286 (307)
                         ++..++.....+++|++........         ...++.|..+++|++++|+.+++.+++
T Consensus        69 ---~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~E~~~~~w~~~~el~~~~~~~~  120 (137)
T cd03424          69 ---FYPSPGFSDERIHLFLAEDLSPGEE---------GLLDEGEDIEVVLVPLDEALELLADGE  120 (137)
T ss_pred             ---EecCCcccCccEEEEEEEccccccc---------CCCCCCCeeEEEEecHHHHHHHHHcCC
Confidence               4444666666777887755321100         123567899999999999999887544

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=2.7e-17  Score=133.54  Aligned_cols=114  Identities=26%  Similarity=0.295  Sum_probs=77.3

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      +|.++++  +++  +|||++|.+.+..+..|++|||++|+| |++.+||+||++||||+.+....+..++.         
T Consensus         2 ~v~~vi~--~~~--~vLL~~r~~~~~~~~~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~v~~~~~~~~~~---------   67 (120)
T cd04683           2 AVYVLLR--RDD--EVLLQRRANTGYMDGQWALPAGHLEKG-EDAVTAAVREAREEIGVTLDPEDLRLAHT---------   67 (120)
T ss_pred             cEEEEEE--ECC--EEEEEEccCCCCCCCeEeCCccccCCC-CCHHHHHHHHHHHHHCCccChhheEEEEE---------
Confidence            3444433  444  599998877655567899999999998 99999999999999999986545555543         


Q ss_pred             eecCCCccceEEEE-EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          226 FFPSAGGCDEEISL-FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       226 ~~~spg~~~e~i~l-f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      ++..++.....+.+ |.+... ..        ... ..+++|..+++|++++++...+.
T Consensus        68 ~~~~~~~~~~~~~~~f~~~~~-~~--------~~~-~~~~~e~~~~~W~~~~~l~~~~~  116 (120)
T cd04683          68 MHRRTEDIESRIGLFFTVRRW-SG--------EPR-NCEPDKCAELRWFPLDALPDDTV  116 (120)
T ss_pred             EEecCCCCceEEEEEEEEEee-cC--------ccc-cCCCCcEeeEEEEchHHCcchhc
Confidence            23333332344444 444332 11        111 22557888999999999987664

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.72  E-value=7e-17  Score=136.47  Aligned_cols=128  Identities=21%  Similarity=0.164  Sum_probs=83.2

Q ss_pred             eCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCC
Q 021805          143 RGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPST  222 (307)
Q Consensus       143 r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~  222 (307)
                      ++.+|+++++. .++  ++||++|.+.   ...|++|||++|.| |++.+||+||++||||+++....+..+....  ..
T Consensus         6 ~~~~v~~vi~~-~~~--~vLl~~r~~~---~~~W~lPgG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~--~~   76 (148)
T PRK09438          6 RPVSVLVVIYT-PDL--GVLMLQRADD---PDFWQSVTGSLEEG-ETPAQTAIREVKEETGIDVLAEQLTLIDCQR--SI   76 (148)
T ss_pred             CceEEEEEEEe-CCC--eEEEEEecCC---CCcEeCCcccCCCC-CCHHHHHHHHHHHHhCcCccccceeeccccc--cc
Confidence            45677777652 333  5888877543   24799999999998 9999999999999999998433333221000  00


Q ss_pred             Cceee------cCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhHHHHH
Q 021805          223 GCKFF------PSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAI  291 (307)
Q Consensus       223 ~~~~~------~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ktl~al  291 (307)
                      ...++      ..++..+...++|+++....         .   ..+.+|..++.|++++++.++........++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~---------~---~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~l  139 (148)
T PRK09438         77 EYEIFPHWRHRYAPGVTRNTEHWFCLALPHE---------R---PVVLTEHLAYQWLDAREAAALTKSWSNAEAI  139 (148)
T ss_pred             ccccchhhhhccccccCCceeEEEEEecCCC---------C---ccccCcccceeeCCHHHHHHHhcChhHHHHH
Confidence            00011      14566677888888764211         0   1234589999999999999987644433333

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.72  E-value=9.4e-17  Score=135.42  Aligned_cols=119  Identities=16%  Similarity=0.186  Sum_probs=80.1

Q ss_pred             CEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCc
Q 021805          145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGC  224 (307)
Q Consensus       145 ~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~  224 (307)
                      .+|+++++. .++  ++||+++ +.+.++..|++|||++|+| |++.+||+||++||||+++..  +..++..       
T Consensus        14 ~av~~vv~~-~~~--~vLL~~r-~~~~~~~~w~lPgG~ve~g-Et~~~aa~REl~EEtGl~~~~--~~~~~~~-------   79 (142)
T cd04700          14 RAAGAVILN-ERN--DVLLVQE-KGGPKKGLWHIPSGAVEDG-EFPQDAAVREACEETGLRVRP--VKFLGTY-------   79 (142)
T ss_pred             eeEEEEEEe-CCC--cEEEEEE-cCCCCCCeEECCceecCCC-CCHHHHHHHHHHHhhCceeec--cEEEEEE-------
Confidence            456666552 233  5888876 4444567899999999998 999999999999999999853  3444321       


Q ss_pred             eeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhHH
Q 021805          225 KFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVL  288 (307)
Q Consensus       225 ~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ktl  288 (307)
                       .+..++......++|++......          ......+|..+++|++++++.+++.++++.
T Consensus        80 -~~~~~~~~~~~~~~f~~~~~~~~----------~~~~~~~E~~~~~w~~~~el~~~~~~g~i~  132 (142)
T cd04700          80 -LGRFDDGVLVLRHVWLAEPEGQT----------LAPKFTDEIAEASFFSREDVAQLYAQGQLR  132 (142)
T ss_pred             -EEEcCCCcEEEEEEEEEEecCCc----------cccCCCCCEEEEEEECHHHhhhcccccccc
Confidence             22233333344567777643110          001234688999999999999998865543

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.71  E-value=1.2e-16  Score=135.62  Aligned_cols=112  Identities=20%  Similarity=0.258  Sum_probs=76.1

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      .++++++. ++ .++|||++|++.+    .|+||||++|.| |++.+||+||++||||+++..  +...          .
T Consensus         3 ~~gaii~~-~~-~~~vLLvr~~~~~----~W~lPGG~ve~g-Es~~~AA~REl~EETGl~v~~--~~~~----------~   63 (145)
T cd03672           3 VYGAIILN-ED-LDKVLLVKGWKSK----SWSFPKGKINKD-EDDHDCAIREVYEETGFDISK--YIDK----------D   63 (145)
T ss_pred             eeEEEEEe-CC-CCEEEEEEecCCC----CEECCCccCCCC-cCHHHHHHHHHHHhhCcccee--cccc----------c
Confidence            44555442 22 2379999887653    699999999998 999999999999999999852  2211          1


Q ss_pred             eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCC
Q 021805          226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPD  284 (307)
Q Consensus       226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D  284 (307)
                      .|...+..+..+++|++.......        .....+++|..+++|++++++.+++.+
T Consensus        64 ~~~~~~~~~~~~~~f~~~~~~~~~--------~~~~~~~~E~~~~~Wv~~~el~~~~~~  114 (145)
T cd03672          64 DYIELIIRGQNVKLYIVPGVPEDT--------PFEPKTRKEISKIEWFDIKDLPTKKNK  114 (145)
T ss_pred             eeeecccCCcEEEEEEEecCCCCc--------ccCcCChhhhheEEEeeHHHhhhhhhh
Confidence            344444455667777765321100        000123578999999999999988764

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=2.7e-16  Score=128.14  Aligned_cols=102  Identities=14%  Similarity=0.180  Sum_probs=75.0

Q ss_pred             EEEEEEeeecCC-CCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEE
Q 021805          160 YAILTEQVRVPT-GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEIS  238 (307)
Q Consensus       160 ~VLLvrQ~R~p~-g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~  238 (307)
                      +|||++|.+.+. ....|++|||++|+| |++.+||+||++||||+++.  .+..+..         ++...+ ....++
T Consensus        12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~~~--~~~~l~~---------~~~~~~-~~~~~~   78 (117)
T cd04691          12 KVLLERRSLTKNADPGKLNIPGGHIEAG-ESQEEALLREVQEELGVDPL--SYTYLCS---------LYHPTS-ELQLLH   78 (117)
T ss_pred             EEEEEEeCCCCCCCCCeEECcceeecCC-CCHHHHHHHHHHHHHCCCcc--cceEEEE---------EeccCC-CeEEEE
Confidence            699999876553 556899999999998 99999999999999999963  4555543         333232 455667


Q ss_pred             EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhH
Q 021805          239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKV  287 (307)
Q Consensus       239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~kt  287 (307)
                      +|.+....         +    ....+|..+++|++++++..+..+.++
T Consensus        79 ~~~~~~~~---------~----~~~~~E~~~~~W~~~~~l~~~~~~~~~  114 (117)
T cd04691          79 YYVVTFWQ---------G----EIPAQEAAEVHWMTANDIVLASEADRL  114 (117)
T ss_pred             EEEEEEec---------C----CCCcccccccEEcCHHHcchhhhhHHh
Confidence            77765421         1    124478889999999999987766553

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.68  E-value=5.7e-16  Score=126.81  Aligned_cols=113  Identities=27%  Similarity=0.258  Sum_probs=78.0

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      +++++++..++++.+|||+++.+.    ..|++|||++|+| |++.+||.||++||||+++..  +..++.+        
T Consensus         3 ~a~~ii~~~~~~~~~vLl~~~~~~----~~w~~PgG~v~~g-Es~~~aa~REl~EEtGl~~~~--~~~~~~~--------   67 (131)
T cd03673           3 AAGGVVFRGSDGGIEVLLIHRPRG----DDWSLPKGKLEPG-ETPPEAAVREVEEETGIRAEV--GDPLGTI--------   67 (131)
T ss_pred             eEEEEEEEccCCCeEEEEEEcCCC----CcccCCCCccCCC-CCHHHHHHHHHhhhhCCceEe--cceEEEE--------
Confidence            455555543444468999987654    4699999999998 999999999999999998853  3334321        


Q ss_pred             eecC---CCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          226 FFPS---AGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       226 ~~~s---pg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      .|+.   ++.....+++|.+..... .        .. ..+++|..+++|++++++.+++.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~-~~~~~E~~~~~W~~~~el~~~~~  118 (131)
T cd03673          68 RYWFSSSGKRVHKTVHWWLMRALGG-E--------FT-PQPDEEVDEVRWLPPDEARDRLS  118 (131)
T ss_pred             EEeccCCCCCcceEEEEEEEEEcCC-C--------cc-cCCCCcEEEEEEcCHHHHHHHcC
Confidence            2222   234556777777654321 1        00 11567889999999999998876

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.68  E-value=6.9e-16  Score=125.84  Aligned_cols=112  Identities=19%  Similarity=0.139  Sum_probs=77.0

Q ss_pred             eEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCc---cce
Q 021805          159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGG---CDE  235 (307)
Q Consensus       159 ~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~---~~e  235 (307)
                      ++|||+++.+.+ ++..|++|||++|.| |++.+||+||++||||+++..  +..++..      ...+.+++.   .+.
T Consensus        11 ~~vLl~~~~~~~-~~~~w~lPgG~ve~g-E~~~~aa~RE~~EEtGl~~~~--~~~~~~~------~~~~~~~~~~~~~~~   80 (128)
T cd04684          11 GKLLLIQKNGGP-YEGRWDLPGGGIEPG-ESPEEALHREVLEETGLTVEI--GRRLGSA------SRYFYSPDGDYDAHH   80 (128)
T ss_pred             CEEEEEEccCCC-CCCeEECCCcccCCC-CCHHHHHHHHHHHHhCcEeec--ceeeeEE------EEEEECCCCCeeccE
Confidence            369999888766 556899999999998 999999999999999999854  3333321      123444443   244


Q ss_pred             EEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhHHH
Q 021805          236 EISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLT  289 (307)
Q Consensus       236 ~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ktl~  289 (307)
                      ..++|.+.......         ......+|..++.|++++++.+.........
T Consensus        81 ~~~~f~~~~~~~~~---------~~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~  125 (128)
T cd04684          81 LCVFYDARVVGGAL---------PVQEPGEDSHGAAWLPLDEAIERLLSPLVLW  125 (128)
T ss_pred             EEEEEEEEEecCcc---------ccCCCCCCceeeEEECHHHhhccCCCHHHHH
Confidence            55667765532110         0123566788999999999987766444433

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=7.4e-16  Score=126.24  Aligned_cols=115  Identities=18%  Similarity=0.271  Sum_probs=75.3

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      +|+++++ +.++  +|||++|.+.+ +...|++|||++|+| |++.+||+||++||||+++...++.....        .
T Consensus         4 ~~~~~i~-~~~~--~vLL~~r~~~~-~~~~w~lPgG~ve~g-Et~~eaa~RE~~EEtGl~~~~~~~~~~~~--------~   70 (125)
T cd04679           4 GCGAAIL-RDDG--KLLLVKRLRAP-EAGHWGIPGGKVDWM-EAVEDAVVREIEEETGLSIHSTRLLCVVD--------H   70 (125)
T ss_pred             EEEEEEE-CCCC--EEEEEEecCCC-CCCeEeCCeeeccCC-CCHHHHHHHHHHHHHCCCcccceEEEEEe--------e
Confidence            4555544 2233  69999887654 345899999999998 99999999999999999986433322211        1


Q ss_pred             eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCC
Q 021805          226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPD  284 (307)
Q Consensus       226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D  284 (307)
                      .+..+ .......+|++.....         . ....+++|..+++|++++++.+.+.+
T Consensus        71 ~~~~~-~~~~~~~~f~~~~~~~---------~-~~~~~~~E~~~~~W~~~~~l~~~l~~  118 (125)
T cd04679          71 IIEEP-PQHWVAPVYLAENFSG---------E-PRLMEPDKLLELGWFALDALPQPLTR  118 (125)
T ss_pred             cccCC-CCeEEEEEEEEeecCC---------c-cccCCCccccEEEEeCHHHCCchhHH
Confidence            22222 2233445566654211         1 11235678889999999999876653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.66  E-value=5.6e-16  Score=137.37  Aligned_cols=120  Identities=17%  Similarity=0.210  Sum_probs=80.2

Q ss_pred             EEEEeCCEEEEEEEEecCCceEEEEEE---eeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeecc
Q 021805          139 IVFARGPAVAVLILLDSEGETYAILTE---QVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLT  215 (307)
Q Consensus       139 ~v~~r~~aVaVl~il~~~g~~~VLLvr---Q~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~  215 (307)
                      +...++++|+|+++..+ ++..+||++   |+|...  +.|+||||++|+++|++.+||+||++||||+..  +.+..++
T Consensus        25 ~~~~~~~aavvl~l~~~-~~~~vLl~~R~~~~r~~~--G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~--~~~~~lg   99 (190)
T PRK10707         25 ETLNQRQAAVLIPIVRR-PQPTLLLTQRSIHLRKHA--GQVAFPGGAVDPTDASLIATALREAQEEVAIPP--SAVEVIG   99 (190)
T ss_pred             ccccCCCeEEEEEEEEC-CCCEEEEEEeCCcccCCC--CcEEcCCcccCCCcccHHHHHHHHHHHHHCCCc--cceEEEE
Confidence            34456778888877643 334677776   344433  368999999998657899999999999999987  4677777


Q ss_pred             ccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805          216 AFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT  282 (307)
Q Consensus       216 ~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i  282 (307)
                      .         +++.++..+..++.|++......          .-..+++|.+++.|+|++++.++.
T Consensus       100 ~---------l~~~~~~~~~~~~~~v~~~~~~~----------~~~~d~~Ev~~v~~vpl~e~~~~~  147 (190)
T PRK10707        100 V---------LPPVDSSTGYQVTPVVGIIPPDL----------PYRANEDEVAAVFEMPLAEALHLG  147 (190)
T ss_pred             E---------eeeeeccCCcEEEEEEEEECCCC----------CCCCChhhhheEEEEeHHHHhCcc
Confidence            5         33322223333444443322111          112477899999999999998774

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.66  E-value=1.7e-15  Score=128.18  Aligned_cols=125  Identities=25%  Similarity=0.281  Sum_probs=81.5

Q ss_pred             CCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCC
Q 021805          144 GPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG  223 (307)
Q Consensus       144 ~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~  223 (307)
                      +.+|+++++. .+  ++|||++|.+.+   ..|++|||++|+| |++.+||+||++||||+++....  .++.+-.    
T Consensus         3 ~~~v~~ii~~-~~--~~vLL~~r~~~~---~~W~~PgG~~e~g-E~~~~aA~REv~EEtGl~~~~~~--~l~~~~~----   69 (147)
T cd03671           3 RPNVGVVLFN-ED--GKVFVGRRIDTP---GAWQFPQGGIDEG-EDPEQAALRELEEETGLDPDSVE--IIAEIPD----   69 (147)
T ss_pred             CceEEEEEEe-CC--CEEEEEEEcCCC---CCEECCcCCCCCC-cCHHHHHHHHHHHHHCCCcCceE--EEEEcCC----
Confidence            3567777652 33  369999988765   5799999999998 99999999999999999985333  3322100    


Q ss_pred             ceeecCC---------C-ccceEEEEEEEEEechhHHHHHhccCCCccC-CCCceEEEEEEchhhHhhccCChhHH
Q 021805          224 CKFFPSA---------G-GCDEEISLFLYRGRVDKEIIMQLQGKETGLR-DHGELIKVRVVPYRELWRTTPDAKVL  288 (307)
Q Consensus       224 ~~~~~sp---------g-~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~-~~~E~i~v~wvpleel~~~i~D~ktl  288 (307)
                      ...|..+         | ..+...++|++........+       .-.. +++|..+++|++++++.+++...+..
T Consensus        70 ~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~l~~~~~~E~~~~~W~~~~el~~~~~~~~~~  138 (147)
T cd03671          70 WLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEI-------DLNAPEHPEFDEWRWVPLEELPDLIVPFKRP  138 (147)
T ss_pred             eeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCccc-------cCCCCCCCCEeeEEeCCHHHHHHhchhhhHH
Confidence            0112222         1 23556677776553211111       0011 35789999999999999998744433

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.66  E-value=2.5e-15  Score=124.43  Aligned_cols=101  Identities=17%  Similarity=0.220  Sum_probs=69.7

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCC-ccceEEE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAG-GCDEEIS  238 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg-~~~e~i~  238 (307)
                      ++||++|.+.  ++..|++|||++|+| |++.+||.||++||||+++....+....          .+..+. ......+
T Consensus        12 ~vLlv~r~~~--~~~~w~~PgG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~~~~~----------~~~~~~~~~~~~~~   78 (134)
T cd03675          12 RFLLVEEETD--GGLVFNQPAGHLEPG-ESLIEAAVRETLEETGWHVEPTALLGIY----------QWTAPDSDTTYLRF   78 (134)
T ss_pred             EEEEEEEccC--CCceEECCCccCCCC-CCHHHHHHHHHHHHHCcccccceEEEEE----------EeecCCCCeeEEEE
Confidence            5999988775  456899999999998 9999999999999999998654443332          222232 1222334


Q ss_pred             EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      +|++......          .....++|..++.|++++++.++..
T Consensus        79 ~f~~~~~~~~----------~~~~~~~e~~~~~w~~~~el~~~~~  113 (134)
T cd03675          79 AFAAELLEHL----------PDQPLDSGIVRAHWLTLEEILALAA  113 (134)
T ss_pred             EEEEEECCCC----------CCCCCCCCceeeEEEeHHHHHhhhh
Confidence            5655442110          0012456788999999999998873

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=1.2e-15  Score=123.46  Aligned_cols=109  Identities=25%  Similarity=0.323  Sum_probs=74.2

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      +|.++++  ++ ++++||++|...+    .|++|||+++.| |++.+||+||++||||+.+. ..+..++.         
T Consensus         2 ~~~~~i~--~~-~~~vLL~~r~~~~----~w~~PgG~ve~g-Et~~~aa~REl~EEtG~~~~-~~~~~~~~---------   63 (120)
T cd04680           2 GARAVVT--DA-DGRVLLVRHTYGP----GWYLPGGGLERG-ETFAEAARRELLEELGIRLA-VVAELLGV---------   63 (120)
T ss_pred             ceEEEEE--CC-CCeEEEEEECCCC----cEeCCCCcCCCC-CCHHHHHHHHHHHHHCCccc-cccceEEE---------
Confidence            3445544  32 2368888765432    799999999998 99999999999999999985 12333332         


Q ss_pred             eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      ++.........+++|.+.....         ..  ..+++|..+++|++++++.+++.
T Consensus        64 ~~~~~~~~~~~~~~f~~~~~~~---------~~--~~~~~E~~~~~w~~~~~l~~~~~  110 (120)
T cd04680          64 YYHSASGSWDHVIVFRARADTQ---------PV--IRPSHEISEARFFPPDALPEPTT  110 (120)
T ss_pred             EecCCCCCceEEEEEEecccCC---------Cc--cCCcccEEEEEEECHHHCcccCC
Confidence            2222333455677777654321         10  23667889999999999998765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.65  E-value=9.4e-16  Score=125.27  Aligned_cols=120  Identities=27%  Similarity=0.390  Sum_probs=83.4

Q ss_pred             CEEEEEEEEecCCceEEEEEEeeecCC-CCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCC
Q 021805          145 PAVAVLILLDSEGETYAILTEQVRVPT-GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG  223 (307)
Q Consensus       145 ~aVaVl~il~~~g~~~VLLvrQ~R~p~-g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~  223 (307)
                      .+|+++++. .++  ++||+++.+.+. ....|.+|||++|+| |++.+||+||++||||+++....+....        
T Consensus         3 ~~v~~ii~~-~~~--~vLl~~r~~~~~~~~~~~~~pgG~i~~~-E~~~~aa~REl~EE~g~~~~~~~~~~~~--------   70 (134)
T PF00293_consen    3 RAVGVIIFN-EDG--KVLLIKRSRSPITFPGYWELPGGGIEPG-ESPEEAARRELKEETGLDVSPLELLGLF--------   70 (134)
T ss_dssp             EEEEEEEEE-TTT--EEEEEEESTTSSSSTTEEESSEEEECTT-SHHHHHHHHHHHHHHSEEEEEEEEEEEE--------
T ss_pred             CEEEEEEEe-CCc--EEEEEEecCCCCCCCCeEecceeeEEcC-CchhhhHHhhhhhcccceecccccceee--------
Confidence            456666552 333  799999988763 446899999999997 9999999999999999998544444433        


Q ss_pred             ceeecCCCc--cceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhH
Q 021805          224 CKFFPSAGG--CDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKV  287 (307)
Q Consensus       224 ~~~~~spg~--~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~kt  287 (307)
                        .+..+..  .....++|++.........         ..+.+|..+++|++++|+.++...++.
T Consensus        71 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~e~~~~~W~~~~el~~~~~~~~~  125 (134)
T PF00293_consen   71 --SYPSPSGDPEGEIVIFFIAELPSEQSEI---------QPQDEEISEVKWVPPDELLELLLNGRI  125 (134)
T ss_dssp             --EEEETTTESSEEEEEEEEEEEEEEESEC---------HTTTTTEEEEEEEEHHHHHHHHHTTHH
T ss_pred             --eecccCCCcccEEEEEEEEEEeCCcccc---------CCCCccEEEEEEEEHHHhhhchhCcch
Confidence              2333322  2456666666554332111         124449999999999999998875553

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=1.3e-15  Score=123.35  Aligned_cols=102  Identities=22%  Similarity=0.295  Sum_probs=69.1

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCc---cceE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGG---CDEE  236 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~---~~e~  236 (307)
                      ++||++|.+.+ ++..|++|||++|+| |++.+||+||++||||+++..........        ..+..++.   ....
T Consensus        12 ~vLl~~r~~~~-~~~~w~~PgG~ie~g-E~~~~aa~RE~~EEtGl~~~~~~~~~~~~--------~~~~~~~~~~~~~~~   81 (122)
T cd04673          12 RVLLVRRANPP-DAGLWSFPGGKVELG-ETLEQAALRELLEETGLEAEVGRLLTVVD--------VIERDAAGRVEFHYV   81 (122)
T ss_pred             EEEEEEEcCCC-CCCeEECCCcccCCC-CCHHHHHHHHHHHhhCcEeeeceeEEEEE--------EeeccCCCccceEEE
Confidence            59999887654 345899999999998 99999999999999999985433322221        13333322   2234


Q ss_pred             EEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          237 ISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       237 i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      ++.|.+....         +.   ....+|..++.|++++++.++..
T Consensus        82 ~~~~~~~~~~---------~~---~~~~~E~~~~~w~~~~el~~~~~  116 (122)
T cd04673          82 LIDFLCRYLG---------GE---PVAGDDALDARWVPLDELAALSL  116 (122)
T ss_pred             EEEEEEEeCC---------Cc---ccCCcccceeEEECHHHHhhCcC
Confidence            4455554321         11   12456888999999999987653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.64  E-value=1.8e-15  Score=129.71  Aligned_cols=115  Identities=25%  Similarity=0.240  Sum_probs=77.2

Q ss_pred             CEEEEEEEEecCCceEEEEEEeeecCC-CCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCC
Q 021805          145 PAVAVLILLDSEGETYAILTEQVRVPT-GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG  223 (307)
Q Consensus       145 ~aVaVl~il~~~g~~~VLLvrQ~R~p~-g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~  223 (307)
                      .||.|++. +.++..+|||++|.+... ....|++|||++|+|||++.+||+||++||||+++.  .+..++.       
T Consensus         3 ~av~v~l~-~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~--~~~~l~~-------   72 (157)
T cd03426           3 AAVLVLLV-EREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPD--SVEVLGR-------   72 (157)
T ss_pred             eEEEEEEE-eCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCcc--ceEEEEE-------
Confidence            34544443 334446899988766432 345899999999995499999999999999999985  4555543       


Q ss_pred             ceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhc
Q 021805          224 CKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT  281 (307)
Q Consensus       224 ~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~  281 (307)
                        +..........+++|++..... .         ....+++|..++.|++++++.+.
T Consensus        73 --~~~~~~~~~~~v~~~~~~~~~~-~---------~~~~~~~E~~~~~W~~~~el~~~  118 (157)
T cd03426          73 --LPPYYTRSGFVVTPVVGLVPPP-L---------PLVLNPDEVAEVFEVPLSFLLDP  118 (157)
T ss_pred             --CCCccccCCCEEEEEEEEECCC-C---------CCCCCHHHhheeEEEcHHHHhCc
Confidence              1111222245567777654321 0         11245678999999999999875

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.64  E-value=7.3e-15  Score=126.29  Aligned_cols=111  Identities=19%  Similarity=0.200  Sum_probs=87.2

Q ss_pred             EEeCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccC
Q 021805          141 FARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYP  220 (307)
Q Consensus       141 ~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~  220 (307)
                      ..++++|+|+++.  ++  ++||++|++.     .|++|||++|+| |++.+||+||++||||+.+  ..+..++.    
T Consensus        21 ~~~~~~V~ii~~~--~~--~~LL~~~~~~-----~~elPgG~vE~g-Et~~eaA~REl~EETG~~~--~~~~~lg~----   84 (156)
T TIGR02705        21 SPNPNHVLVIPRY--KD--QWLLTEHKRR-----GLEFPGGKVEPG-ETSKEAAIREVMEETGAIV--KELHYIGQ----   84 (156)
T ss_pred             cCCCCEEEEEEEE--CC--EEEEEEEcCC-----cEECCceecCCC-CCHHHHHHHHHHHHhCcEe--eeeEEEEE----
Confidence            3457788887763  33  5889988752     499999999998 9999999999999999988  46777774    


Q ss_pred             CCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEE-EEchhhHhhccCChh
Q 021805          221 STGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVR-VVPYRELWRTTPDAK  286 (307)
Q Consensus       221 ~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~-wvpleel~~~i~D~k  286 (307)
                           ++.+++.++...++|+|.....              ...+|.+++. +++++++.+++..++
T Consensus        85 -----~~~~~~~~~~~~~vf~A~~~~~--------------~~~~e~~E~~~~~~~~~~~~~~~~g~  132 (156)
T TIGR02705        85 -----YEVEGESTDFVKDVYFAEVSAL--------------ESKDDYLETKGPVLLQEIPDIIKADP  132 (156)
T ss_pred             -----EEecCCCcEEEEEEEEEEEecc--------------ccCCCceeeEeEEEHHHHHHHHhcCC
Confidence                 7778888889999999876411              1336777877 799999988876444

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=5.3e-15  Score=121.90  Aligned_cols=112  Identities=18%  Similarity=0.116  Sum_probs=75.6

Q ss_pred             EEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCcee
Q 021805          147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKF  226 (307)
Q Consensus       147 VaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~  226 (307)
                      +++|++..+++..++||+++.+.    ..|.+|||++|.| |++.+||+||++||||+++... +..++.+        .
T Consensus         3 ~g~v~~~~~~~~~~vLLv~~~~~----~~w~~PgG~ve~~-E~~~~aa~RE~~EEtG~~~~~~-~~~l~~~--------~   68 (122)
T cd04666           3 AGAIPYRETGGEVEVLLVTSRRT----GRWIVPKGGPEKD-ESPAEAAAREAWEEAGVRGKIG-KRPLGRF--------E   68 (122)
T ss_pred             EEEEEEEEcCCceEEEEEEecCC----CeEECCCCCcCCC-CCHHHHHHHHHHHHhCCccccc-ceEEEEE--------E
Confidence            45565554444568999988654    4699999999998 9999999999999999987532 1445431        2


Q ss_pred             ecCCC---ccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          227 FPSAG---GCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       227 ~~spg---~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      +..++   .....+++|.+..... .         . ..++.|..+++|++++++.+++.
T Consensus        69 ~~~~~~~~~~~~~~~~f~~~~~~~-~---------~-~~~~~e~~~~~W~~~~ea~~~~~  117 (122)
T cd04666          69 YRKRSKNRPPRCEVAVFPLEVTEE-L---------D-EWPEMHQRKRKWFSPEEAALLVE  117 (122)
T ss_pred             eeecCCCCCceEEEEEEEEEEecc-c---------c-CCcccCceEEEEecHHHHHHhcC
Confidence            22222   1244556666554211 0         0 12345678899999999998875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=4.4e-15  Score=123.07  Aligned_cols=106  Identities=21%  Similarity=0.184  Sum_probs=71.5

Q ss_pred             CCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccce
Q 021805          156 EGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDE  235 (307)
Q Consensus       156 ~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e  235 (307)
                      ++++++||++|.+.  ....|.+|||++|+| |++.+||+||++||||+++..  +.....      ...+|..++....
T Consensus        11 ~~~~~vLl~~r~~~--~~g~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~~~--~~~~~~------~~~~~~~~~~~~~   79 (131)
T cd04695          11 DKETKVLLLKRVKT--LGGFWCHVAGGVEAG-ETAWQAALRELKEETGISLPE--LYNADY------LEQFYEANDNRIL   79 (131)
T ss_pred             CCCCEEEEEEecCC--CCCcEECCcccccCC-CCHHHHHHHHHHHHhCCCccc--cccccc------eeeEeecCCceEE
Confidence            34457999887654  234689999999998 999999999999999999852  222111      0124554443334


Q ss_pred             EEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          236 EISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       236 ~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      .+.+|++..... .        .  ...++|..+++|++++++.++..
T Consensus        80 ~~~~f~~~~~~~-~--------~--~~~~~E~~~~~W~~~~e~~~~~~  116 (131)
T cd04695          80 MAPVFVGFVPPH-Q--------E--VVLNHEHTEYRWCSFAEALELAP  116 (131)
T ss_pred             EEEEEEEEecCC-C--------c--cccCchhcccEecCHHHHHHhcC
Confidence            455666554211 0        0  11346888999999999998876

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=3.7e-15  Score=121.81  Aligned_cols=101  Identities=18%  Similarity=0.175  Sum_probs=72.1

Q ss_pred             EEEEEEeeecCC--CCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEE
Q 021805          160 YAILTEQVRVPT--GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEI  237 (307)
Q Consensus       160 ~VLLvrQ~R~p~--g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i  237 (307)
                      ++||++|.+.|.  ....|++|||++|.| |++.+||+||++||||+++....+....          .|..+ ..+...
T Consensus        13 ~vLl~~r~~~~~~~~~g~w~~PgG~ve~g-E~~~~aa~RE~~EE~Gl~~~~~~~~~~~----------~~~~~-~~~~~~   80 (122)
T cd04682          13 RLLLQLRDDKPGIPYPGHWDLPGGHREGG-ETPLECVLRELLEEIGLTLPESRIPWFR----------VYPSA-SPPGTE   80 (122)
T ss_pred             EEEEEEccCCCCCCCCCcEeCCCccccCC-CCHHHHHHHHHHHHhCCcccccccceeE----------ecccC-CCCceE
Confidence            699988876532  345899999999998 9999999999999999998543332222          33333 345677


Q ss_pred             EEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805          238 SLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT  282 (307)
Q Consensus       238 ~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i  282 (307)
                      ++|.+......          .-..+.+|..+++|++++|+.+..
T Consensus        81 ~~f~~~~~~~~----------~~~~~~~E~~~~~W~~~~el~~~~  115 (122)
T cd04682          81 HVFVVPLTARE----------DAILFGDEGQALRLMTVEEFLAHE  115 (122)
T ss_pred             EEEEEEEecCC----------CccccCchhheeecccHHHHhhcc
Confidence            88877654221          012367788899999999996543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=4.9e-15  Score=121.86  Aligned_cols=110  Identities=26%  Similarity=0.487  Sum_probs=72.1

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      +|+++++ +.++  ++||++|.+.+ .+..|++|||++|.| |++.+||.||++||||+++.  .+..++.+      ..
T Consensus         3 av~~~i~-~~~~--~vLL~~r~~~~-~~~~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~~--~~~~~~~~------~~   69 (130)
T cd04681           3 AVGVLIL-NEDG--ELLVVRRAREP-GKGTLDLPGGFVDPG-ESAEEALIREIREETGLKVT--ELSYLFSL------PN   69 (130)
T ss_pred             eEEEEEE-cCCC--cEEEEEecCCC-CCCcEeCCceeecCC-CCHHHHHHHHHHHHhCCccc--ceeEEEee------cc
Confidence            4555544 2233  69998876655 345899999999998 99999999999999999885  34444431      11


Q ss_pred             eecCCCccceEEEE-EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHh
Q 021805          226 FFPSAGGCDEEISL-FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELW  279 (307)
Q Consensus       226 ~~~spg~~~e~i~l-f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~  279 (307)
                      .++..+.....+++ |++... ...         . ..+.+|...++|++++++.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~-~~~---------~-~~~~~e~~~~~W~~~~el~  113 (130)
T cd04681          70 TYPYGGMEYDTLDLFFVCQVD-DKP---------I-VKAPDDVAELKWVVPQDIE  113 (130)
T ss_pred             eeeeCCceeEEEEEEEEEEeC-CCC---------C-cCChHHhheeEEecHHHCC
Confidence            24444444444444 444431 110         0 2245688899999999984

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.62  E-value=7.7e-15  Score=120.57  Aligned_cols=117  Identities=22%  Similarity=0.250  Sum_probs=75.9

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      +++++++..++++.++||+++..     ..|++|||++|+| |++.+||+||++||||+++..  +..+..+..    ..
T Consensus         4 ~~g~vi~~~~~~~~~vLl~~~~~-----~~w~~PgG~ve~g-Es~~~aa~REl~EEtGl~~~~--~~~~~~~~~----~~   71 (130)
T cd03428           4 SAGAIIYRRLNNEIEYLLLQASY-----GHWDFPKGHVEPG-EDDLEAALRETEEETGITAEQ--LFIVLGFKE----TL   71 (130)
T ss_pred             EEEEEEEEecCCCceEEEEEccC-----CcCcCCcCCCCCC-CCHHHHHHHHHHHHHCCChhh--hhhhcccee----EE
Confidence            45555555444445688886653     4699999999998 999999999999999999863  222211100    00


Q ss_pred             eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChh
Q 021805          226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAK  286 (307)
Q Consensus       226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~k  286 (307)
                      .+. .......+++|++..... ..        . ..+ +|..++.|++++++.+++....
T Consensus        72 ~~~-~~~~~~~~~~f~~~~~~~-~~--------~-~~~-~E~~~~~W~~~~e~~~~~~~~~  120 (130)
T cd03428          72 NYQ-VRGKLKTVTYFLAELRPD-VE--------V-KLS-EEHQDYRWLPYEEALKLLTYED  120 (130)
T ss_pred             Ecc-ccCcceEEEEEEEEeCCC-Cc--------c-ccc-cceeeEEeecHHHHHHHcCchh
Confidence            111 123455667777765311 10        0 113 6888999999999999886444

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.61  E-value=4.4e-15  Score=125.11  Aligned_cols=120  Identities=23%  Similarity=0.318  Sum_probs=78.3

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCC---CCeEEEc-cceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCC
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPT---GRVILEL-PAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPS  221 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~---g~~~wEl-PaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~  221 (307)
                      +|.|+++..++++.++||.+  |.+.   ..+.|++ |||++|+| |++.+||+||++||||+.+....+..++.+.   
T Consensus         4 ~v~~~v~~~~~~~~~vLl~~--R~~~~~~~pg~W~~~~gG~ve~g-Et~~~aa~REl~EEtGl~~~~~~l~~~~~~~---   77 (144)
T cd04692           4 TFHCWIITKDEGKGYVLLQK--RSANKKTYPGLWDISSAGHILAG-ETPLEDGIRELEEELGLDVSADDLIPLGTFK---   77 (144)
T ss_pred             EEEEEEEEccCCCCEEEEEe--cCCCCCCCCCccccccCcccCCC-CCHHHHHHHHHHHHhCCCCChHHeEEeeEEE---
Confidence            45555553333335677654  4432   2348999 59999998 9999999999999999988655666665421   


Q ss_pred             CCceeec-CCC-ccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          222 TGCKFFP-SAG-GCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       222 ~~~~~~~-spg-~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                         ..+. ..+ ...+..++|++........+         ..+++|..+++|++++++.+++.
T Consensus        78 ---~~~~~~~~~~~~~~~~~f~~~~~~~~~~~---------~~~~~E~~~~~W~~~~el~~~~~  129 (144)
T cd04692          78 ---IEYDHIGKLIDREFHHVYLYELKVPLEEF---------TLQKEEVAGVVLIPLDEFAELLE  129 (144)
T ss_pred             ---EeccccCCCccceEEEEEEEeccCChhhc---------CCChhHhheEEEECHHHHHHHHH
Confidence               1111 112 23455677877654221110         23567899999999999998875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.60  E-value=9.6e-15  Score=121.19  Aligned_cols=99  Identities=20%  Similarity=0.187  Sum_probs=68.4

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCC-ccceEEE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAG-GCDEEIS  238 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg-~~~e~i~  238 (307)
                      ++||+++.+.+ ....|++|||++|.| |++.+||+||++||||+.+....+  ++.        ..+..++ .....++
T Consensus        13 ~vLL~~r~~~~-~~~~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~~~~~~--~~~--------~~~~~~~~~~~~~~~   80 (137)
T cd03427          13 KVLLLNRKKGP-GWGGWNGPGGKVEPG-ETPEECAIRELKEETGLTIDNLKL--VGI--------IKFPFPGEEERYGVF   80 (137)
T ss_pred             EEEEEEecCCC-CCCeEeCCceeCCCC-CCHHHHHHHHHHHhhCeEeecceE--EEE--------EEEEcCCCCcEEEEE
Confidence            59998877655 456899999999998 999999999999999999864333  332        1233333 2344556


Q ss_pred             EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805          239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT  282 (307)
Q Consensus       239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i  282 (307)
                      +|.+....         +.   ...+.|..+++|++++++.++.
T Consensus        81 ~f~~~~~~---------~~---~~~~~e~~~~~W~~~~el~~~~  112 (137)
T cd03427          81 VFLATEFE---------GE---PLKESEEGILDWFDIDDLPLLP  112 (137)
T ss_pred             EEEECCcc---------cc---cCCCCccccceEEcHhhccccc
Confidence            66654321         11   1235566789999999998654

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.60  E-value=2.6e-14  Score=117.62  Aligned_cols=120  Identities=18%  Similarity=0.218  Sum_probs=73.0

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      +|+++++  +++  +|||+++.+.  ++..|++|||++|.| |++.+||+||++||||+++...++..+..+....   .
T Consensus         3 ~a~~iv~--~~~--~vLl~~r~~~--~~~~~~lPGG~ve~g-Et~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~---~   72 (128)
T cd04687           3 SAKAVII--KND--KILLIKHHDD--GGVWYILPGGGQEPG-ETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHN---P   72 (128)
T ss_pred             EEEEEEE--ECC--EEEEEEEEcC--CCCeEECCCcccCCC-CCHHHHHHHHHHHHHCCccccCcEEEEEEEeccC---c
Confidence            3444443  344  6999987654  235799999999998 9999999999999999999765655554310000   0


Q ss_pred             eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805          226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT  282 (307)
Q Consensus       226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i  282 (307)
                      ........+...++|++..... ...     . .....+.|..+++|++++++.++.
T Consensus        73 ~~~~~~~~~~i~~~f~~~~~~~-~~~-----~-~~~~~~~~~~~~~W~~~~~l~~~~  122 (128)
T cd04687          73 TSELPGHFHQVELMFECKIKSG-TPA-----K-TPSKPDPNQIGVEWLKLKELGDIP  122 (128)
T ss_pred             cccCCCceeEEEEEEEEEECCC-Ccc-----c-ccCCCCCCEEeeEEEcHHHhCccc
Confidence            0001112233445566654321 100     0 001133456789999999997654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.59  E-value=1.3e-14  Score=119.05  Aligned_cols=98  Identities=18%  Similarity=0.202  Sum_probs=64.4

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCc---cceE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGG---CDEE  236 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~---~~e~  236 (307)
                      ++||+++.+   .+..|++|||++|.| |++.+||+||++||||+++....+..+..        ..+ .++.   ....
T Consensus        15 ~iLL~r~~~---~~~~w~lPGG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~~~~~~--------~~~-~~~~~~~~~~~   81 (125)
T cd04696          15 RILLVRTTK---WRGLWGVPGGKVEWG-ETLEEALKREFREETGLKLRDIKFAMVQE--------AIF-SEEFHKPAHFV   81 (125)
T ss_pred             CEEEEEccC---CCCcEeCCceeccCC-CCHHHHHHHHHHHHhCCcccccceEEEEE--------Eec-cCCCCCccEEE
Confidence            688887543   235799999999998 99999999999999999986544433321        112 1222   1222


Q ss_pred             EEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805          237 ISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT  282 (307)
Q Consensus       237 i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i  282 (307)
                      +..|.+...  ..       .   ....+|..+++|++++++.++-
T Consensus        82 ~~~~~~~~~--~~-------~---~~~~~e~~~~~W~~~~el~~~~  115 (125)
T cd04696          82 LFDFFARTD--GT-------E---VTPNEEIVEWEWVTPEEALDYP  115 (125)
T ss_pred             EEEEEEEec--CC-------c---ccCCcccceeEEECHHHHhcCC
Confidence            333544432  11       1   1244688999999999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.59  E-value=1.4e-14  Score=118.95  Aligned_cols=102  Identities=22%  Similarity=0.236  Sum_probs=64.4

Q ss_pred             eEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEE
Q 021805          159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEIS  238 (307)
Q Consensus       159 ~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~  238 (307)
                      ++|||++++..  .+..|++|||++|.| |++.+||+||++||||+.+....  .+..         .+..+........
T Consensus        14 ~~vLl~~r~~~--~~~~w~~PGG~ve~g-Et~~~aa~RE~~EE~Gl~~~~~~--~~~~---------~~~~~~~~~~~~~   79 (127)
T cd04670          14 NEVLVVQERNK--TPNGWKLPGGLVDPG-EDIFDGAVREVLEETGIDTEFVS--VVGF---------RHAHPGAFGKSDL   79 (127)
T ss_pred             CeEEEEEccCC--CCCcEECCCccCCCC-CCHHHHHHHHHHHHHCCCcceeE--EEEE---------EecCCCCcCceeE
Confidence            36888876443  456899999999998 99999999999999999885322  2221         1111222222223


Q ss_pred             EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      +|++... ...      ...  ..+++|..+++|++++++.+...
T Consensus        80 ~~~~~~~-~~~------~~~--~~~~~E~~~~~w~~~~el~~~~~  115 (127)
T cd04670          80 YFICRLK-PLS------FDI--NFDTSEIAAAKWMPLEEYISQPI  115 (127)
T ss_pred             EEEEEEc-cCc------CcC--CCChhhhheeEEEcHHHHhcchh
Confidence            3443321 110      110  23567888999999999976544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.59  E-value=1.1e-14  Score=119.23  Aligned_cols=103  Identities=17%  Similarity=0.218  Sum_probs=66.3

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL  239 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l  239 (307)
                      +|||+++.+.  +...|++|||++|.| |++.+||+||++||||+++....+..            .+..+   +...++
T Consensus        13 ~vLL~~r~~~--~~~~w~lPGG~ve~g-Es~~~a~~REl~EEtGl~~~~~~~~~------------~~~~~---~~~~~~   74 (121)
T cd04669          13 EILLIRRIKP--GKTYYVFPGGGIEEG-ETPEEAAKREALEELGLDVRVEEIFL------------IVNQN---GRTEHY   74 (121)
T ss_pred             EEEEEEEecC--CCCcEECCceeccCC-CCHHHHHHHHHHHhhCeeEeeeeEEE------------EEeeC---CcEEEE
Confidence            6999887653  345899999999998 99999999999999999985433222            22222   234567


Q ss_pred             EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805          240 FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT  282 (307)
Q Consensus       240 f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i  282 (307)
                      |.|..... . +....+......++++.+++.||+++++..+-
T Consensus        75 f~~~~~~g-~-~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~  115 (121)
T cd04669          75 FLARVISG-K-LGLGVGEEFERQSDDNQYHPVWVDLDQLETIP  115 (121)
T ss_pred             EEEEEECC-e-ecCCCchhhcccCCCCceEEEEEEHHHcccCC
Confidence            77754321 1 00000000001124567889999999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.59  E-value=1.3e-14  Score=119.39  Aligned_cols=119  Identities=20%  Similarity=0.059  Sum_probs=76.1

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      +|+|+++. ..+.+++||++|.+.  ....|++|||++|.| |++.+||+||++||||+.+..  +..+.....  ....
T Consensus         3 ~~~v~~~~-~~~~~~vLL~~r~~~--~~~~w~~PgG~ve~~-Es~~~aa~RE~~EE~Gl~~~~--~~~~~~~~~--~~~~   74 (129)
T cd04664           3 SVLVVPYR-LTGEGRVLLLRRSDK--YAGFWQSVTGGIEDG-ESPAEAARREVAEETGLDPER--LTLLDRGAS--IAFV   74 (129)
T ss_pred             EEEEEEEE-eCCCCEEEEEEeCCC--CCCcccccCcccCCC-CCHHHHHHHHHHHHHCCChhh--eEEEeeccc--cccc
Confidence            56666553 212347999887664  455899999999998 999999999999999999742  333321100  0000


Q ss_pred             eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCC
Q 021805          226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPD  284 (307)
Q Consensus       226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D  284 (307)
                      .+..++ ....+++|++......           ....++|..+++|++++++.+++..
T Consensus        75 ~~~~~~-~~~~~~~f~~~~~~~~-----------~~~~~~E~~~~~W~~~~e~~~~~~~  121 (129)
T cd04664          75 EFTDNG-RVWTEHPFAFHLPSDA-----------VVTLDWEHDAFEWVPPEEAAALLLW  121 (129)
T ss_pred             ccCCCc-eEEEEeEEEEEcCCCC-----------cccCCccccccEecCHHHHHHHHcC
Confidence            112222 3445667776543210           0124567889999999999988763

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.59  E-value=1.9e-14  Score=118.65  Aligned_cols=101  Identities=18%  Similarity=0.142  Sum_probs=68.0

Q ss_pred             eEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEE
Q 021805          159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEIS  238 (307)
Q Consensus       159 ~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~  238 (307)
                      ++|||+++.+.+. +..|++|||++|.| |++.+||+||++||||+++...++..+            +..+  .....+
T Consensus        12 ~~vLl~~r~~~~~-~~~w~lPgG~ve~g-Et~~~aa~REl~EEtG~~~~~~~~~~~------------~~~~--~~~~~~   75 (123)
T cd04671          12 GEVLLIQEAKRSC-RGKWYLPAGRMEPG-ETIEEAVKREVKEETGLDCEPTTLLSV------------EEQG--GSWFRF   75 (123)
T ss_pred             CEEEEEEecCCCC-CCeEECceeecCCC-CCHHHHHHHHHHHHHCCeeecceEEEE------------EccC--CeEEEE
Confidence            3699999887653 45899999999998 999999999999999999964333221            2122  223455


Q ss_pred             EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      +|.+.....  .+.      ....+++|..+++|++++++...+.
T Consensus        76 ~f~a~~~~g--~~~------~~~~~~~e~~~~~W~~~~el~~~~~  112 (123)
T cd04671          76 VFTGNITGG--DLK------TEKEADSESLQARWYSNKDLPLPLR  112 (123)
T ss_pred             EEEEEEeCC--eEc------cCCCCCcceEEEEEECHHHCCCccc
Confidence            666654211  110      0011456788999999999954444

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.58  E-value=6.3e-15  Score=121.14  Aligned_cols=115  Identities=24%  Similarity=0.282  Sum_probs=73.8

Q ss_pred             EEEEEEEecCCceEEEEEEeeecC-CCCeEEEcc-ceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCc
Q 021805          147 VAVLILLDSEGETYAILTEQVRVP-TGRVILELP-AGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGC  224 (307)
Q Consensus       147 VaVl~il~~~g~~~VLLvrQ~R~p-~g~~~wElP-aG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~  224 (307)
                      |.++++ ++++  +|||++|.+.. .....|++| ||++|.| |++ +||+||++||||+++....+..+..        
T Consensus         3 v~v~~~-~~~g--~vLl~~R~~~~~~~pg~w~~p~GG~ve~g-E~~-~aa~REl~EEtGl~~~~~~~~~~~~--------   69 (127)
T cd04693           3 VHVCIF-NSKG--ELLLQKRSPNKDGWPGMWDLSVGGHVQAG-ETS-TAAEREVKEELGLELDFSELRPLFR--------   69 (127)
T ss_pred             EEEEEE-eCCC--eEEEEEccCCCCCCCCcccccCCCcCCCC-CCH-HHHHHHHHHHhCCCcChhhcEEEEE--------
Confidence            444443 2333  68887665432 233579998 8999998 999 9999999999999986555555543        


Q ss_pred             eeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhH
Q 021805          225 KFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKV  287 (307)
Q Consensus       225 ~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~kt  287 (307)
                      ..+..++..  .+.+|.+... .        +.  -..+++|..+++|++++|+.+++.+++.
T Consensus        70 ~~~~~~~~~--~~~~~~~~~~-~--------~~--~~~~~~E~~~~~w~~~~el~~~~~~~~~  119 (127)
T cd04693          70 YFFEAEGFD--DYYLFYADVE-I--------GK--LILQKEEVDEVKFVSKDEIDGLIGHGEF  119 (127)
T ss_pred             EEeecCCeE--EEEEEEecCc-c--------cc--cccCHHHhhhEEEeCHHHHHHHHhcCCc
Confidence            123333322  2333433211 1        10  0235678889999999999999886653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.58  E-value=2.7e-14  Score=120.87  Aligned_cols=116  Identities=13%  Similarity=0.222  Sum_probs=72.8

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      +|+++++ +.++  +|||+++.+.|. +..|++|||++|.| |++.+||+||++||||+++...++..++.+      ..
T Consensus        14 ~v~~vI~-~~~g--~vLl~~R~~~p~-~g~w~lPGG~ve~g-Es~~~aa~RE~~EE~Gl~v~~~~~~~l~~~------~~   82 (144)
T cd03430          14 SIDLIVE-NEDG--QYLLGKRTNRPA-QGYWFVPGGRIRKN-ETLTEAFERIAKDELGLEFLISDAELLGVF------EH   82 (144)
T ss_pred             EEEEEEE-eCCC--eEEEEEccCCCC-CCcEECCCceecCC-CCHHHHHHHHHHHHHCCCcccccceEEEEE------EE
Confidence            4445544 2234  698887765443 45799999999998 999999999999999999865522223211      01


Q ss_pred             eec----CCCccceE-EEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          226 FFP----SAGGCDEE-ISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       226 ~~~----spg~~~e~-i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      .+.    .++..... ..+|.+... .        +..  ...++|..+++|++++++.++..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~--~~~~~e~~~~~W~~~~el~~~~~  134 (144)
T cd03430          83 FYDDNFFGDDFSTHYVVLGYVLKLS-S--------NEL--LLPDEQHSEYQWLTSDELLADDD  134 (144)
T ss_pred             EeccccccCCCccEEEEEEEEEEEc-C--------Ccc--cCCchhccEeEEecHHHHhcCCC
Confidence            222    12222223 333544432 1        111  23567888999999999987544

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.58  E-value=1.9e-14  Score=119.72  Aligned_cols=96  Identities=23%  Similarity=0.284  Sum_probs=69.1

Q ss_pred             eEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEE
Q 021805          159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEIS  238 (307)
Q Consensus       159 ~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~  238 (307)
                      +++||++|.+.|  ...|.+|||+++.| |++.+||+||++||||+++.  .+..++..        .+..+   +..+.
T Consensus        12 ~~vLL~~r~~~~--~~~w~lPgG~ie~g-Et~~~aA~REl~EEtGl~~~--~~~~l~~~--------~~~~~---~~~~~   75 (131)
T cd03429          12 DRILLARQPRFP--PGMYSLLAGFVEPG-ESLEEAVRREVKEEVGIRVK--NIRYVGSQ--------PWPFP---SSLML   75 (131)
T ss_pred             CEEEEEEecCCC--CCcCcCCcccccCC-CCHHHHHhhhhhhccCceee--eeEEEeec--------CCCCC---ceEEE
Confidence            479999887765  34689999999998 99999999999999999984  45555421        12222   34556


Q ss_pred             EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhc
Q 021805          239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT  281 (307)
Q Consensus       239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~  281 (307)
                      +|++....  .       ..  ..+++|..++.|++++++.++
T Consensus        76 ~f~~~~~~--~-------~~--~~~~~E~~~~~w~~~~el~~~  107 (131)
T cd03429          76 GFTAEADS--G-------EI--VVDDDELEDARWFSRDEVRAA  107 (131)
T ss_pred             EEEEEEcC--C-------cc--cCCchhhhccEeecHHHHhhc
Confidence            67665421  1       10  235678888999999999875

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.58  E-value=1e-14  Score=120.26  Aligned_cols=111  Identities=17%  Similarity=0.204  Sum_probs=74.0

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCC-CCeEEEc-cceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCC
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPT-GRVILEL-PAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG  223 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~-g~~~wEl-PaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~  223 (307)
                      ++.|+++ +.++  +|||+++...+. ..+.|++ |||++++| |++.+||+||++||||+++.  .+..++.       
T Consensus         2 ~~~v~i~-~~~~--~iLl~~R~~~~~~~~g~w~~~~GG~ve~g-E~~~~aa~REl~EEtGl~~~--~l~~~~~-------   68 (126)
T cd04697           2 ATYIFVF-NSEG--KLCVHKRTLTKDWCPGYWDIAFGGVVQAG-ESYLQNAQRELEEELGIDGV--QLTPLGL-------   68 (126)
T ss_pred             eEEEEEE-cCCC--eEEEEECCCCCCCCCCcccCcCCcccCCC-CCHHHHHHHHHHHHHCCCcc--ccEEeeE-------
Confidence            3445544 2333  688854432221 2347999 68999998 99999999999999999884  5666654       


Q ss_pred             ceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          224 CKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       224 ~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                        ++.+.+......++|.+....+          .  ..+++|..+++|++++++.+++.
T Consensus        69 --~~~~~~~~~~~~~~f~~~~~~~----------~--~~~~~E~~~~~w~~~~el~~~~~  114 (126)
T cd04697          69 --FYYDTDGNRVWGKVFSCVYDGP----------L--KLQEEEVEEITWLSINEILQFKE  114 (126)
T ss_pred             --EEecCCCceEEEEEEEEEECCC----------C--CCCHhHhhheEEcCHHHHHHHhh
Confidence              2333333445556776643211          1  23567888999999999999876

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.58  E-value=4.6e-14  Score=121.10  Aligned_cols=120  Identities=20%  Similarity=0.190  Sum_probs=78.7

Q ss_pred             CEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCc
Q 021805          145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGC  224 (307)
Q Consensus       145 ~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~  224 (307)
                      .+|+++++. .++  +|||++|.+.   +..|++|||++++| |++.+||.||++||||+++.  .+..++.+..    .
T Consensus         9 ~~v~~~i~~-~~g--~vLL~~r~~~---~~~w~~P~G~~~~g-E~~~~aa~REl~EEtG~~~~--~~~~~~~~~~----~   75 (156)
T PRK00714          9 PNVGIILLN-RQG--QVFWGRRIGQ---GHSWQFPQGGIDPG-ETPEQAMYRELYEEVGLRPE--DVEILAETRD----W   75 (156)
T ss_pred             CeEEEEEEe-cCC--EEEEEEEcCC---CCeEECCcccCCCC-cCHHHHHHHHHHHHhCCCcc--ceEEEEEcCC----e
Confidence            466666552 344  6999888653   25799999999998 99999999999999999874  3333432100    0


Q ss_pred             eee---------cCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          225 KFF---------PSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       225 ~~~---------~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      ..|         ..++..++..++|++........+     .. ...+++|..+++|++++|+.+++.
T Consensus        76 ~~y~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~-----~l-~~~~~~E~~~~~W~~~del~~~~~  137 (156)
T PRK00714         76 LRYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEI-----NL-NTTSHPEFDAWRWVSYWYPLDQVV  137 (156)
T ss_pred             EEecCcHHHhhccCCcccCcEEEEEEEEecCCCccc-----cC-CCCCCCCeeeeEeCCHHHHHHhch
Confidence            011         234445556777887653211111     00 012457999999999999999875

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.58  E-value=6.4e-14  Score=122.55  Aligned_cols=121  Identities=21%  Similarity=0.178  Sum_probs=79.4

Q ss_pred             EEEEEEEEecCC-ceEEEEEEeeecCC---CCeEE-EccceecCCCCCCHHHHHHHHHHHHhCCcccccc-eeecccccc
Q 021805          146 AVAVLILLDSEG-ETYAILTEQVRVPT---GRVIL-ELPAGMLDDDKGDFVGTAVREVEEETGIQLKLED-MIDLTAFLY  219 (307)
Q Consensus       146 aVaVl~il~~~g-~~~VLLvrQ~R~p~---g~~~w-ElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~-L~~L~~l~~  219 (307)
                      +|.|.+++.+.+ ..++++.+  |...   .+.+| ++|||++++| |++.+||+||++||||+++...+ +..++.+  
T Consensus        34 ~v~~~~~~~~~~~~~~l~lqr--Rs~~K~~~Pg~wd~~~~G~v~~g-E~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~--  108 (180)
T cd03676          34 GVHLNGYVRDEDGGLRIWIPR--RSPTKATWPGMLDNLVAGGLGHG-EGPEETLVKECDEEAGLPEDLVRQLKPVGVV--  108 (180)
T ss_pred             EEEEEEEEEcCCCCeEEEEEe--ccCCCCCCCCceeeecccCCCCC-CCHHHHHHHHHHHHhCCCHHHHhhceeccEE--
Confidence            555554443332 34676644  3333   24578 6999999998 99999999999999999885322 4444321  


Q ss_pred             CCCCceee--cCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCCh
Q 021805          220 PSTGCKFF--PSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDA  285 (307)
Q Consensus       220 ~~~~~~~~--~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~  285 (307)
                          ...+  ...+..++.+++|.+....+..          -..+++|.+++.|++++|+.+++.++
T Consensus       109 ----~~~~~~~~~~~~~e~~~~f~~~~~~~~~----------~~~~~~Ev~~~~~~~~~el~~~l~~g  162 (180)
T cd03676         109 ----SYLREGEAGGLQPEVEYVYDLELPPDFI----------PAPQDGEVESFRLLTIDEVLRALKEG  162 (180)
T ss_pred             ----EEEEEcCCCcEeeeEEEEEEEEcCCCCe----------eCCCCCcEeEEEEECHHHHHHHHHcC
Confidence                1133  2344567778888765321110          02367899999999999999988643

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.58  E-value=2e-14  Score=119.03  Aligned_cols=93  Identities=18%  Similarity=0.206  Sum_probs=67.5

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL  239 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l  239 (307)
                      ++||++|.+.+ +...|++|||++|.| |++.+||+||++||||+++...  ..++          .+..++. ...+++
T Consensus        25 ~vLL~kr~~~~-~~g~w~lPgG~ve~g-E~~~~a~~REl~EEtGl~~~~~--~~~~----------~~~~~~~-~~~~~~   89 (130)
T cd04511          25 KVLLCRRAIEP-RHGFWTLPAGFMENG-ETTEQGALRETWEEAGARVEID--GLYA----------VYSVPHI-SQVYMF   89 (130)
T ss_pred             EEEEEEecCCC-CCCeEECCcccccCC-CCHHHHHHHHHHHHhCCEEEee--eEEE----------EEecCCc-eEEEEE
Confidence            69999987655 445899999999998 9999999999999999998432  2222          4444543 345666


Q ss_pred             EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHh
Q 021805          240 FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELW  279 (307)
Q Consensus       240 f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~  279 (307)
                      |+++....         .   .....|..+++|++++++.
T Consensus        90 f~~~~~~~---------~---~~~~~e~~~~~~~~~~~l~  117 (130)
T cd04511          90 YRARLLDL---------D---FAPGPESLEVRLFTEEEIP  117 (130)
T ss_pred             EEEEEcCC---------c---ccCCcchhceEEECHHHCC
Confidence            77765321         0   1234577889999999996

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.57  E-value=3e-14  Score=116.61  Aligned_cols=100  Identities=19%  Similarity=0.197  Sum_probs=64.9

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCcc-ceEEE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGC-DEEIS  238 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~-~e~i~  238 (307)
                      ++||++|.+    ...|++|||++|+| |++.+||+||++||||+.+...++..+...       ..+..++.. +....
T Consensus        14 ~vLL~~~~~----~~~w~~PGG~ve~g-Es~~~aa~REl~EEtG~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~   81 (123)
T cd04672          14 KILLVREKS----DGLWSLPGGWADVG-LSPAENVVKEVKEETGLDVKVRKLAAVDDR-------NKHHPPPQPYQVYKL   81 (123)
T ss_pred             EEEEEEEcC----CCcEeCCccccCCC-CCHHHHHHHHHHHHhCCeeeEeEEEEEecc-------ccccCCCCceEEEEE
Confidence            699988865    24699999999998 999999999999999998854333333210       011111111 22223


Q ss_pred             EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      +|++... .        +.   ....+|..+++|++++++.++..
T Consensus        82 ~f~~~~~-~--------~~---~~~~~E~~~~~W~~~~el~~l~~  114 (123)
T cd04672          82 FFLCEIL-G--------GE---FKPNIETSEVGFFALDDLPPLSE  114 (123)
T ss_pred             EEEEEec-C--------Cc---ccCCCceeeeEEECHHHCccccc
Confidence            4544432 1        11   12346888999999999988764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02325 nudix hydrolase

Probab=99.57  E-value=3.2e-14  Score=120.52  Aligned_cols=106  Identities=18%  Similarity=0.186  Sum_probs=67.8

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL  239 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l  239 (307)
                      +|||+++.+.+ +...|.+|||++|.| |++.+||+||++||||+++...++..+..        ..+..++...+.+.+
T Consensus        21 ~vLL~rr~~~~-~~g~W~lPGG~ve~g-Es~~~aa~REv~EEtGl~v~~~~~l~~~~--------~~~~~~~~~~~~i~~   90 (144)
T PLN02325         21 SVLLGRRRSSI-GDSTFALPGGHLEFG-ESFEECAAREVKEETGLEIEKIELLTVTN--------NVFLEEPKPSHYVTV   90 (144)
T ss_pred             EEEEEEecCCC-CCCeEECCceeCCCC-CCHHHHHHHHHHHHHCCCCcceEEEEEec--------ceeecCCCCcEEEEE
Confidence            68887765443 445799999999998 99999999999999999986544433321        123333333344444


Q ss_pred             -EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          240 -FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       240 -f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                       |.+... +..      .. ....+.+|..++.|++++++...+.
T Consensus        91 ~f~~~~~-~~~------~~-~~~~e~~e~~~~~W~~~d~Lp~~~~  127 (144)
T PLN02325         91 FMRAVLA-DPS------QV-PQNLEPEKCYGWDWYEWDNLPEPLF  127 (144)
T ss_pred             EEEEEEC-CCC------CC-CCcCCchhcCceEEEChHHCChhhh
Confidence             434321 111      00 0012445667899999999987554

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.57  E-value=5.5e-14  Score=117.83  Aligned_cols=110  Identities=18%  Similarity=0.154  Sum_probs=65.0

Q ss_pred             EEEEEEeeecC-CCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEE
Q 021805          160 YAILTEQVRVP-TGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEIS  238 (307)
Q Consensus       160 ~VLLvrQ~R~p-~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~  238 (307)
                      +|||+++.... ..+..|++|||++|+| |++.+||+||++||||+++....+.... + ........|+. |..++..+
T Consensus        16 ~vLl~~R~~~~~~~~g~W~lPgG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~~~~~-~-~~~~~~~~~~~-~~~~~~~~   91 (141)
T PRK15472         16 AYLLCKMADDRGVFPGQWALSGGGVEPG-ERIEEALRREIREELGEQLLLTEITPWT-F-RDDIRTKTYAD-GRKEEIYM   91 (141)
T ss_pred             EEEEEEecccCCCCCCceeCCcccCCCC-CCHHHHHHHHHHHHHCCceeeeeecccc-c-cccceeEEecC-CCceeEEE
Confidence            58887654321 2345899999999998 9999999999999999987433222110 0 00000012221 22233333


Q ss_pred             EEEE-EEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          239 LFLY-RGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       239 lf~~-~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      +|++ ......       +.   ....+|..++.|++++|+.++..
T Consensus        92 ~~~~~~~~~~~-------~~---~~~~~E~~~~~w~~~~el~~l~~  127 (141)
T PRK15472         92 IYLIFDCVSAN-------RD---VKINEEFQDYAWVKPEDLVHYDL  127 (141)
T ss_pred             EEEEEEeecCC-------Cc---ccCChhhheEEEccHHHhccccc
Confidence            3332 221111       11   12446888999999999998764

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.55  E-value=5.5e-14  Score=117.71  Aligned_cols=114  Identities=23%  Similarity=0.239  Sum_probs=68.5

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      +|+++++  ++.+++|||++|.+.    ..|.+|||++|+| |++.+||+||++||||+++.......+..  +    ..
T Consensus         4 ~~~~~v~--~~~~~~vLLv~r~~~----~~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~~~~~~~~~~~~--~----~~   70 (138)
T cd03674           4 TASAFVV--NPDRGKVLLTHHRKL----GSWLQPGGHIDPD-ESLLEAALRELREETGIELLGLRPLSVLV--D----LD   70 (138)
T ss_pred             EEEEEEE--eCCCCeEEEEEEcCC----CcEECCceecCCC-CCHHHHHHHHHHHHHCCCcccceeccccc--c----ce
Confidence            4555554  332247999987652    3589999999998 99999999999999999875322211100  0    01


Q ss_pred             eecCCCcc------ce-EEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805          226 FFPSAGGC------DE-EISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT  282 (307)
Q Consensus       226 ~~~spg~~------~e-~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i  282 (307)
                      .+..++..      .. ...+|++.....         ... ..+++|..++.|++++++.++.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~---------~~~-~~~~~E~~~~~W~~~~el~~~~  124 (138)
T cd03674          71 VHPIDGHPKRGVPGHLHLDLRFLAVAPAD---------DVA-PPKSDESDAVRWFPLDELASLE  124 (138)
T ss_pred             eEeecCCCCCCCCCcEEEEEEEEEEccCc---------ccc-CCCCCcccccEEEcHHHhhhcc
Confidence            22222221      11 223465543211         110 1256788899999999996553

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.55  E-value=6.2e-14  Score=121.00  Aligned_cols=113  Identities=14%  Similarity=0.170  Sum_probs=70.4

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccc--cceeeccccccCCCC
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKL--EDMIDLTAFLYPSTG  223 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~--~~L~~L~~l~~~~~~  223 (307)
                      +|++++.  ++ .++|||+++...+ ....|++|||++|.| |++.+||+||++||||+.+..  ..+..+..       
T Consensus        19 ~v~~vI~--~~-~g~VLL~kR~~~~-~~g~W~lPGG~VE~G-Et~~~Aa~REl~EEtGl~v~~~~~~~~~~~~-------   86 (159)
T PRK15434         19 SLDFIVE--NS-RGEFLLGKRTNRP-AQGYWFVPGGRVQKD-ETLEAAFERLTMAELGLRLPITAGQFYGVWQ-------   86 (159)
T ss_pred             EEEEEEE--CC-CCEEEEEEccCCC-CCCcEECCceecCCC-CCHHHHHHHHHHHHHCCccccccceEEEEEE-------
Confidence            4444443  32 2469888765333 345899999999998 999999999999999999742  23322211       


Q ss_pred             ceeecC-CCc---c-ceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805          224 CKFFPS-AGG---C-DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT  282 (307)
Q Consensus       224 ~~~~~s-pg~---~-~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i  282 (307)
                       ..|.. +..   . +..+.+|.+....         +..  ..+++|..+++|++++++.+..
T Consensus        87 -~~~~~~~~~~~~~~~~i~~~f~~~~~~---------g~~--~~~~~E~~~~~W~~~~el~~~~  138 (159)
T PRK15434         87 -HFYDDNFSGTDFTTHYVVLGFRLRVAE---------EDL--LLPDEQHDDYRWLTPDALLASD  138 (159)
T ss_pred             -eecccccCCCccceEEEEEEEEEEecC---------Ccc--cCChHHeeEEEEEeHHHhhhcc
Confidence             12221 111   1 2233445554321         111  2245689999999999998753

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.54  E-value=7.8e-14  Score=114.34  Aligned_cols=105  Identities=20%  Similarity=0.226  Sum_probs=67.9

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCc-cceEEE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGG-CDEEIS  238 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~-~~e~i~  238 (307)
                      +|||+++.+    ...|++|||++|.| |++.+||.||++||||+++....  .++..      ...+...+. .+..++
T Consensus        13 ~vLl~~~~~----~~~w~lPgG~ve~g-Es~~~aa~RE~~EEtGl~~~~~~--~~~~~------~~~~~~~~~~~~~~~~   79 (126)
T cd04688          13 KLLVQKNPD----ETFYRPPGGGIEFG-ESSEEALIREFKEELGLKIEITR--LLGVV------ENIFTYNGKPGHEIEF   79 (126)
T ss_pred             EEEEEEeCC----CCeEECCCccccCC-CCHHHHHHHHHHHHhCCceecce--eeEEE------EEeeccCCcccEEEEE
Confidence            588876543    34799999999998 99999999999999999885433  33221      113333333 455566


Q ss_pred             EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhc
Q 021805          239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT  281 (307)
Q Consensus       239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~  281 (307)
                      +|.+....... .   ........+++|..++.|++++++..+
T Consensus        80 ~f~~~~~~~~~-~---~~~~~~~~~~~e~~~~~W~~~~~l~~~  118 (126)
T cd04688          80 YYLVTLLDESL-Y---QQDIEILEEEGEKIVFRWIPIDELKEI  118 (126)
T ss_pred             EEEEEeCCCcc-c---ccccceeccCCCEEEEEEeeHHHcccC
Confidence            77776532110 0   000000125678999999999999755

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.54  E-value=8.9e-14  Score=113.85  Aligned_cols=99  Identities=17%  Similarity=0.146  Sum_probs=65.4

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccc-eEEE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCD-EEIS  238 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~-e~i~  238 (307)
                      ++||+++..    ...|++|||++|+| |++.+||+||++||||+++..  ...++.+      ...+..++... ...+
T Consensus        13 ~vLlv~~~~----~~~~~lPGG~ve~g-Et~~~aa~REl~EEtGl~~~~--~~~l~~~------~~~~~~~~~~~~~~~~   79 (125)
T cd04689          13 KVLLARVIG----QPHYFLPGGHVEPG-ETAENALRRELQEELGVAVSD--GRFLGAI------ENQWHEKGVRTHEINH   79 (125)
T ss_pred             EEEEEEecC----CCCEECCCCcCCCC-CCHHHHHHHHHHHHhCceeec--cEEEEEE------eeeeccCCceEEEEEE
Confidence            599987632    24699999999998 999999999999999999853  3333321      12344444433 3445


Q ss_pred             EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHh
Q 021805          239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELW  279 (307)
Q Consensus       239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~  279 (307)
                      +|.+.......      .  .....++|..+++|++++++.
T Consensus        80 ~f~~~~~~~~~------~--~~~~~~~e~~~~~W~~~~el~  112 (125)
T cd04689          80 IFAVESSWLAS------D--GPPQADEDHLSFSWVPVSDLS  112 (125)
T ss_pred             EEEEEcccccc------c--CCccCccceEEEEEccHHHcc
Confidence            66665432110      0  112345678899999999964

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.54  E-value=8e-14  Score=128.99  Aligned_cols=100  Identities=22%  Similarity=0.252  Sum_probs=74.1

Q ss_pred             eEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEE
Q 021805          159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEIS  238 (307)
Q Consensus       159 ~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~  238 (307)
                      +++||++|.|.+.  ..|.+|||++|+| |++++||+||++||||+++.  ++..++.        ..++.   .+..++
T Consensus       143 ~~iLL~rr~~~~~--g~wslPgG~vE~G-Es~eeAa~REv~EEtGl~v~--~~~~~~s--------~~~~~---p~~lm~  206 (256)
T PRK00241        143 DEILLARHPRHRN--GVYTVLAGFVEVG-ETLEQCVAREVMEESGIKVK--NLRYVGS--------QPWPF---PHSLML  206 (256)
T ss_pred             CEEEEEEccCCCC--CcEeCcccCCCCC-CCHHHHhhhhhhhccCceee--eeEEEEe--------EeecC---CCeEEE
Confidence            3799999988763  4699999999998 99999999999999999984  5555543        12332   245667


Q ss_pred             EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCCh
Q 021805          239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDA  285 (307)
Q Consensus       239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~  285 (307)
                      .|.+..... + +         ..+++|..+++|++++|+..+..+.
T Consensus       207 ~f~a~~~~~-~-~---------~~~~~Ei~~a~W~~~del~~lp~~~  242 (256)
T PRK00241        207 GFHADYDSG-E-I---------VFDPKEIADAQWFRYDELPLLPPSG  242 (256)
T ss_pred             EEEEEecCC-c-c---------cCCcccEEEEEEECHHHCcccCCch
Confidence            777764311 1 1         2356788999999999998776544

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.53  E-value=1.4e-13  Score=114.32  Aligned_cols=116  Identities=19%  Similarity=0.208  Sum_probs=72.0

Q ss_pred             EEEEEEEEecCCceEEEEEEeeec---CCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCC
Q 021805          146 AVAVLILLDSEGETYAILTEQVRV---PTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPST  222 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~---p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~  222 (307)
                      +++++++..++++.+|||++|.+.   ......|++|||++|.| |++.+||+||++||||+++. ..+..+..      
T Consensus         2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~-E~~~~aA~REl~EEtGl~~~-~~~~~l~~------   73 (126)
T cd04662           2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEG-EDPLLAAKREFSEETGFCVD-GPFIDLGS------   73 (126)
T ss_pred             eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCC-cCHHHHHHHHHHHHhCCcce-eeEEeEEE------
Confidence            455665544555567999987321   02345899999999998 99999999999999999986 34444432      


Q ss_pred             CceeecCCCccceEEEEEEEEEechhHHHHHh------ccCCCccCCCCceEEEEEEch
Q 021805          223 GCKFFPSAGGCDEEISLFLYRGRVDKEIIMQL------QGKETGLRDHGELIKVRVVPY  275 (307)
Q Consensus       223 ~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~------~g~~~g~~~~~E~i~v~wvpl  275 (307)
                         ++...+   ..+++|+++...+...+...      ..........+|..++.|+|+
T Consensus        74 ---~~~~~~---~~v~~fl~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~  126 (126)
T cd04662          74 ---LKQSGG---KVVHAWAVEADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFDI  126 (126)
T ss_pred             ---EECCCC---eEEEEEEEEecCChhHeEEEEEEEEccCCCCccccCCccceeEeecC
Confidence               222222   25666666655444322110      010111222578888999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.53  E-value=7.8e-14  Score=112.67  Aligned_cols=97  Identities=19%  Similarity=0.251  Sum_probs=65.5

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL  239 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l  239 (307)
                      ++||++|..    ...|++|||++++| |++.+||+||++||||+.+....+..++.+..     ..+..++ ....+++
T Consensus        13 ~vLl~~r~~----~~~w~~PgG~ve~~-Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~   81 (118)
T cd04690          13 RVLLVRKRG----TDVFYLPGGKIEAG-ETPLQALIRELSEELGLDLDPDSLEYLGTFRA-----PAANEPG-VDVRATV   81 (118)
T ss_pred             eEEEEEECC----CCcEECCCCccCCC-CCHHHHHHHHHHHHHCCccChhheEEEEEEec-----ccccCCC-cEEEEEE
Confidence            688887642    24699999999998 99999999999999999986434666653210     0011122 3445666


Q ss_pred             EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhh
Q 021805          240 FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWR  280 (307)
Q Consensus       240 f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~  280 (307)
                      |++....   .          ....+|..+++|++++++..
T Consensus        82 f~~~~~~---~----------~~~~~e~~~~~W~~~~e~~~  109 (118)
T cd04690          82 YVAELTG---E----------PVPAAEIEEIRWVDYDDPAD  109 (118)
T ss_pred             EEEcccC---C----------cCCCchhhccEEecHHHccc
Confidence            7664321   0          12456888899999999743

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.52  E-value=1.3e-13  Score=113.40  Aligned_cols=115  Identities=22%  Similarity=0.305  Sum_probs=70.6

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      +|+++++ ++++  ++||+++..  .  ..|++|||++++| |++.+||+||++||||+++...  ..++.+..    ..
T Consensus         9 ~~~~~v~-~~~~--~vLL~~r~~--~--~~w~~PgG~v~~g-Et~~~aa~REl~EE~Gi~~~~~--~~~~~~~~----~~   74 (132)
T cd04677           9 GAGVILL-NEQG--EVLLQKRSD--T--GDWGLPGGAMELG-ESLEETARRELKEETGLEVEEL--ELLGVYSG----KE   74 (132)
T ss_pred             ceEEEEE-eCCC--CEEEEEecC--C--CcEECCeeecCCC-CCHHHHHHHHHHHHhCCeeeee--EEEEEecC----Cc
Confidence            4444443 2334  588865432  2  4699999999998 9999999999999999998643  33321100    01


Q ss_pred             eec--CCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCC
Q 021805          226 FFP--SAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPD  284 (307)
Q Consensus       226 ~~~--spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D  284 (307)
                      .|.  ..+.....+.+|++.....        +..  ..+.+|..+++|++++++.+++.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~--~~~~~e~~~~~W~~~~e~~~~~~~  125 (132)
T cd04677          75 FYVKPNGDDEQYIVTLYYVTKVFG--------GKL--VPDGDETLELKFFSLDELPELINP  125 (132)
T ss_pred             eeecCCCCcEEEEEEEEEEEeccC--------Ccc--cCCCCceeeEEEEChhHCccchhH
Confidence            222  2333334444444433211        110  235678889999999999887764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.52  E-value=1.1e-13  Score=112.84  Aligned_cols=102  Identities=18%  Similarity=0.156  Sum_probs=65.0

Q ss_pred             EEEEEEeeecCC-CCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEE
Q 021805          160 YAILTEQVRVPT-GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEIS  238 (307)
Q Consensus       160 ~VLLvrQ~R~p~-g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~  238 (307)
                      ++||+++.+.+. .+..|++|||.+|+| |++.+||+||++||||+++....+.  ..       ...+...+.......
T Consensus        14 ~iLl~kr~~~~~~~~g~w~~PgG~ve~g-Es~~~aa~RE~~EE~Gl~~~~~~~~--~~-------~~~~~~~~~~~~~~~   83 (129)
T cd04699          14 RILILKRSKDERTAPGKWELPGGKVEEG-ETFEEALKREVYEETGLTVTPFLRY--PS-------TVTHEDSGVYNVIYL   83 (129)
T ss_pred             cEEEEEecCCCCCCCCcCcCCccCccCC-CCHHHHHHHHHHHhhCcEEEeeeee--eE-------EEEEcCCCEEEEEEE
Confidence            588887765542 356899999999998 9999999999999999988533221  11       012322221222223


Q ss_pred             EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      +|.+..... .           ....+|...+.|++++++..+..
T Consensus        84 ~~~~~~~~~-~-----------~~~~~e~~~~~w~~~~el~~~~~  116 (129)
T cd04699          84 VFVCEALSG-A-----------VKLSDEHEEYAWVTLEELAILKA  116 (129)
T ss_pred             EEEeeecCC-c-----------ccCChhheEEEEecHHHhhhhhc
Confidence            344332211 0           12456778899999999855443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.51  E-value=2e-13  Score=119.95  Aligned_cols=100  Identities=16%  Similarity=0.166  Sum_probs=66.0

Q ss_pred             eEEEEEEeeecCC--CCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceE
Q 021805          159 TYAILTEQVRVPT--GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEE  236 (307)
Q Consensus       159 ~~VLLvrQ~R~p~--g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~  236 (307)
                      ++|||.++.....  .++.|.+|||++++| |++.+||+|||+||||+.+.  .+..++.         ++.+.......
T Consensus        49 g~iLL~~R~~~~~~~pg~~~~~pGG~ve~G-Es~~eAA~REL~EEtGl~~~--~~~~~~~---------~~~~~~~~~~~  116 (180)
T PRK15393         49 GKILVQRRTETKDFLPGMLDATAGGVVQAG-EQLLESARREAEEELGIAGV--PFAEHGQ---------FYFEDENCRVW  116 (180)
T ss_pred             CeEEEEEeCCCCCCCCCcccccCCCcCCCC-CCHHHHHHHHHHHHHCCCCc--cceecee---------EEecCCCceEE
Confidence            3688754432211  122346899999998 99999999999999999863  3444432         34444444444


Q ss_pred             EEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805          237 ISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT  282 (307)
Q Consensus       237 i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i  282 (307)
                      .++|.+..  ..        ..  ..+++|..+++|++++++.+++
T Consensus       117 ~~~f~~~~--~~--------~~--~~~~~E~~~~~W~~~~el~~~~  150 (180)
T PRK15393        117 GALFSCVS--HG--------PF--ALQEEEVSEVCWMTPEEITARC  150 (180)
T ss_pred             EEEEEEEe--CC--------CC--CCChHHeeEEEECCHHHHhhhh
Confidence            45565432  11        11  2367799999999999999885

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.51  E-value=1.5e-13  Score=113.01  Aligned_cols=114  Identities=21%  Similarity=0.184  Sum_probs=69.4

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      +|+++++  ++. +++||+++... ..+..|.+|||++++| |++.+||.||++||||+++..  +..++..      ..
T Consensus         4 ~v~~ii~--~~~-~~iLl~~r~~~-~~~~~w~~PGG~ve~g-Et~~~Aa~REl~EE~Gl~~~~--~~~~~~~------~~   70 (129)
T cd04678           4 GVGVFVL--NPK-GKVLLGKRKGS-HGAGTWALPGGHLEFG-ESFEECAAREVLEETGLHIEN--VQFLTVT------ND   70 (129)
T ss_pred             EEEEEEE--CCC-CeEEEEeccCC-CCCCeEECCcccccCC-CCHHHHHHHHHHHHhCCcccc--eEEEEEE------eE
Confidence            3444543  332 36888876543 2445899999999998 999999999999999999853  3333211      01


Q ss_pred             eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhc
Q 021805          226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT  281 (307)
Q Consensus       226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~  281 (307)
                      .+...+ ......+|.+........        ....+.+|...++|++++++.++
T Consensus        71 ~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~~~e~~~~~W~~~~~l~~~  117 (129)
T cd04678          71 VFEEEG-KHYVTIFVKAEVDDGEAE--------PNKMEPEKCEGWEWFDWEELPSV  117 (129)
T ss_pred             EeCCCC-cEEEEEEEEEEeCCCCcc--------cCCCCCceeCceEEeCHHHCCCc
Confidence            222222 222333444443211100        00114567778999999999876

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.51  E-value=1.5e-13  Score=110.71  Aligned_cols=92  Identities=20%  Similarity=0.238  Sum_probs=66.1

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL  239 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l  239 (307)
                      ++||+++.+     ..|++|||++++| |++.+||.||++||||+++.  .+..+..          +..   .+...++
T Consensus        12 ~vLlv~r~~-----~~w~~PgG~ve~g-E~~~~aa~REl~EEtGl~~~--~~~~~~~----------~~~---~~~~~~~   70 (112)
T cd04667          12 RVLLVRKSG-----SRWALPGGKIEPG-ETPLQAARRELQEETGLQGL--DLLYLFH----------VDG---GSTRHHV   70 (112)
T ss_pred             EEEEEEcCC-----CcEeCCCCcCCCC-CCHHHHHHHHHHHHhCCccc--ceEEEEE----------EeC---CCEEEEE
Confidence            688887643     4699999999998 99999999999999999874  4555442          211   1344566


Q ss_pred             EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          240 FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       240 f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      |++.....         ..  ...++|..++.|++++++.++..
T Consensus        71 f~~~~~~~---------~~--~~~~~e~~~~~W~~~~el~~~~~  103 (112)
T cd04667          71 FVASVPPS---------AQ--PKPSNEIADCRWLSLDALGDLNA  103 (112)
T ss_pred             EEEEcCCc---------CC--CCCchheeEEEEecHHHhhhccc
Confidence            76643211         00  12457889999999999988765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.50  E-value=2.6e-13  Score=110.23  Aligned_cols=116  Identities=21%  Similarity=0.212  Sum_probs=69.0

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      +|+++++  ++ ++++||++|...    ..|++|||++|.| |++.+||+||++||||+++....+......  ... ..
T Consensus         4 ~v~~ii~--~~-~~~vLl~~r~~~----~~w~lPgG~v~~~-E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~--~~~-~~   72 (129)
T cd04676           4 GVTAVVR--DD-EGRVLLIRRSDN----GLWALPGGAVEPG-ESPADTAVREVREETGLDVEVTGLVGIYTG--PVH-VV   72 (129)
T ss_pred             eEEEEEE--CC-CCeEEEEEecCC----CcEECCeeccCCC-CCHHHHHHHHHHHHhCceeEeeEEEEEeec--ccc-ee
Confidence            4445543  33 236888776542    4699999999998 999999999999999998854332111100  000 00


Q ss_pred             eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      .++..........+|++... ...        .  ....+|..+++|++++++.++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~-~~~--------~--~~~~~e~~~~~w~~~~el~~~~~  119 (129)
T cd04676          73 TYPNGDVRQYLDITFRCRVV-GGE--------L--RVGDDESLDVAWFDPDGLPPLLM  119 (129)
T ss_pred             ecCCCCcEEEEEEEEEEEee-CCe--------e--cCCCCceeEEEEEChhhCccccC
Confidence            11211112333344544332 110        0  12566788999999999987654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.50  E-value=1.5e-13  Score=114.24  Aligned_cols=52  Identities=29%  Similarity=0.392  Sum_probs=42.6

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcc
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQL  206 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i  206 (307)
                      +|.++++  +++  +|||+++++.    ..|+||||.+|+| |++.+||+||++||||+++
T Consensus         2 ~~~~ii~--~~~--~vLLv~~~~~----~~w~lPgG~ve~g-Et~~~aa~REl~EEtGl~~   53 (131)
T cd04686           2 AVRAIIL--QGD--KILLLYTKRY----GDYKFPGGGVEKG-EDHIEGLIRELQEETGATN   53 (131)
T ss_pred             cEEEEEE--ECC--EEEEEEEcCC----CcEECccccCCCC-CCHHHHHHHHHHHHHCCcc
Confidence            4555544  344  5999988763    2599999999998 9999999999999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.49  E-value=1.6e-13  Score=118.43  Aligned_cols=119  Identities=20%  Similarity=0.164  Sum_probs=73.6

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecC-CCCeEEEcc-ceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCC
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVP-TGRVILELP-AGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG  223 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p-~g~~~wElP-aG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~  223 (307)
                      +|+|+++ +++  ++|||.+|.... ..+..|++| ||++|+| |++++||+||++||||+++....+. +..+..    
T Consensus        32 ~v~v~i~-~~~--~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~G-Et~~eaa~REl~EEtGl~~~~~~~~-~~~~~~----  102 (165)
T cd02885          32 AFSVFLF-NSK--GRLLLQRRALSKYTFPGLWTNTCCSHPLPG-EGVKDAAQRRLREELGITGDLLELV-LPRFRY----  102 (165)
T ss_pred             EEEEEEE-cCC--CcEEEEeccCCCccCCCcccccccCCCCCC-CCHHHHHHHHHHHHhCCCccchhhc-cceEEE----
Confidence            4555544 233  368887654322 123478886 8999998 9999999999999999998643332 122100    


Q ss_pred             ceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCCh
Q 021805          224 CKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDA  285 (307)
Q Consensus       224 ~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~  285 (307)
                      ...+.......+..++|.+....  .        .  ..+.+|..+++|++++++.+++.++
T Consensus       103 ~~~~~~~~~~~~i~~~f~~~~~~--~--------~--~~~~~Ev~~~~w~~~~el~~~~~~~  152 (165)
T cd02885         103 RAPDDGGLVEHEIDHVFFARADV--T--------L--IPNPDEVSEYRWVSLEDLKELVAAA  152 (165)
T ss_pred             EEEcCCCceeeEEEEEEEEEeCC--C--------C--CCCccceeEEEEECHHHHHHHHHhC
Confidence            00111112233445666655321  1        1  2356788899999999999988754

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.47  E-value=5.6e-13  Score=113.01  Aligned_cols=124  Identities=19%  Similarity=0.194  Sum_probs=74.4

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecC-CCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccc--eeeccccccCCC
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVP-TGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLED--MIDLTAFLYPST  222 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p-~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~--L~~L~~l~~~~~  222 (307)
                      +|+|+++ +.+  .++||++|.+.+ ..+..|++|||++++| |++.+||+||++||||+.+....  +..++..     
T Consensus         3 ~v~viv~-~~~--~~vLl~rr~~~~~~~~g~w~~PgG~v~~~-E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~-----   73 (143)
T cd04694           3 GVAVLLQ-SSD--QKLLLTRRASSLRIFPNVWVPPGGHVELG-ENLLEAGLRELNEETGLTLDPIDKSWQVLGLW-----   73 (143)
T ss_pred             EEEEEEE-cCC--CEEEEEEECCCCCCCCCeEECcccccCCC-CCHHHHHHHHHHHHHCCCccccccceeEEeee-----
Confidence            3445544 223  369998887653 2455899999999998 99999999999999999885321  2222210     


Q ss_pred             CceeecC---CCcc-ceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          223 GCKFFPS---AGGC-DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       223 ~~~~~~s---pg~~-~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                       ...|+.   .+.. .+.+.+|++.........    ....-..+.+|..+++|++++++.+++.
T Consensus        74 -~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~----~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~  133 (143)
T cd04694          74 -ESVYPPLLSRGLPKRHHIVVYILVKSSETHQQ----LQARLQPDPNEVSAAAWLDKSLAKAVVS  133 (143)
T ss_pred             -ccccccccCCCcccceeEEEEEEEEecccccc----ccccccCChhhccceEeeCHHHHHHHHH
Confidence             001221   1221 334444444322211000    0000123567899999999999998875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.46  E-value=1.5e-12  Score=107.76  Aligned_cols=99  Identities=14%  Similarity=0.133  Sum_probs=65.1

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL  239 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l  239 (307)
                      +|||+++.+.......|+||||.+|+| |++.+||.||++||||+++....+  ++.        ..+...+ ....+++
T Consensus        16 ~vLL~~R~~~~~~~g~w~~PgG~ve~g-E~~~~a~~RE~~EE~Gl~~~~~~~--~~~--------~~~~~~~-~~~~~~~   83 (135)
T PRK10546         16 KILLAQRPAHSDQAGLWEFAGGKVEPG-ESQPQALIRELREELGIEATVGEY--VAS--------HQREVSG-RRIHLHA   83 (135)
T ss_pred             EEEEEEccCCCCCCCcEECCcccCCCC-CCHHHHHHHHHHHHHCCcccccee--EEE--------EEEecCC-cEEEEEE
Confidence            588887655444456899999999998 999999999999999999864332  221        1122111 2233455


Q ss_pred             EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          240 FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       240 f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      |.+... .        +    .....|...+.|++++++.++..
T Consensus        84 ~~~~~~-~--------~----~~~~~e~~~~~W~~~~el~~~~~  114 (135)
T PRK10546         84 WHVPDF-H--------G----ELQAHEHQALVWCTPEEALRYPL  114 (135)
T ss_pred             EEEEEe-c--------C----cccccccceeEEcCHHHcccCCC
Confidence            544331 1        1    11234566889999999988754

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.45  E-value=7.9e-13  Score=112.40  Aligned_cols=109  Identities=26%  Similarity=0.357  Sum_probs=70.5

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      +|++++.  .++  +|||+++...|.. ..|.+|||++|.| |++++||+||++||||+++..  +..++          
T Consensus        12 ~v~~~i~--~~~--~iLLvrR~~~p~~-g~WalPGG~ve~G-Et~eeaa~REl~EETgL~~~~--~~~~~----------   73 (145)
T COG1051          12 AVGALIV--RNG--RILLVRRANEPGA-GYWALPGGFVEIG-ETLEEAARRELKEETGLRVRV--LELLA----------   73 (145)
T ss_pred             eeeEEEE--eCC--EEEEEEecCCCCC-CcEeCCCccCCCC-CCHHHHHHHHHHHHhCCcccc--eeEEE----------
Confidence            3444443  344  6999988776654 4699999999998 999999999999999999753  33332          


Q ss_pred             eecCCCcc---ceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805          226 FFPSAGGC---DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT  282 (307)
Q Consensus       226 ~~~spg~~---~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i  282 (307)
                      +|..++-.   .....+|++....         +... ..+.++.-.+.|++++++..+.
T Consensus        74 v~~~~~rd~r~~~v~~~~~~~~~~---------g~~~-~~~~~d~~~~~~~~~~~l~~~~  123 (145)
T COG1051          74 VFDDPGRDPRGHHVSFLFFAAEPE---------GELL-AGDGDDAAEVGWFPLDELPELP  123 (145)
T ss_pred             EecCCCCCCceeEEEEEEEEEecC---------CCcc-cCChhhHhhcceecHhHccccc
Confidence            45555432   2222333333221         1110 1123366688999999998754

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.45  E-value=1.8e-12  Score=104.21  Aligned_cols=100  Identities=20%  Similarity=0.146  Sum_probs=68.3

Q ss_pred             eEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEE
Q 021805          159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEIS  238 (307)
Q Consensus       159 ~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~  238 (307)
                      +++||+++.+.+.....|++|||.++.+ |++.++|.||++||||+++..  ...++.+        .+..+ .....++
T Consensus        13 ~~~Ll~~r~~~~~~~g~w~~p~G~~~~~-e~~~~~a~Re~~EE~g~~~~~--~~~~~~~--------~~~~~-~~~~~~~   80 (124)
T cd03425          13 GRILIAQRPAGKHLGGLWEFPGGKVEPG-ETPEQALVRELREELGIEVEV--GELLATV--------EHDYP-DKRVTLH   80 (124)
T ss_pred             CEEEEEEeCCCCCCCCeEeCCCcccCCC-CCHHHHHHHHHHHhhCcEEec--cceEEEE--------EeeCC-CCeEEEE
Confidence            3688888776665566899999999997 999999999999999998753  3333321        22222 2234455


Q ss_pred             EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      +|.+....         +    .....|...+.|++++++.++..
T Consensus        81 ~~~~~~~~---------~----~~~~~e~~~~~W~~~~el~~~~~  112 (124)
T cd03425          81 VFLVELWS---------G----EPQLLEHQELRWVPPEELDDLDF  112 (124)
T ss_pred             EEEEeeeC---------C----CcccccCceEEEeeHHHcccCCC
Confidence            56554321         0    11245667889999999988654

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>TIGR00586 mutt mutator mutT protein

Probab=99.44  E-value=2.5e-12  Score=105.05  Aligned_cols=99  Identities=19%  Similarity=0.058  Sum_probs=64.2

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL  239 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l  239 (307)
                      ++||.++.+.+..+..|+||||.+|+| |++.+||+||++||||+++.....  +..         +....+.....+++
T Consensus        17 ~vLl~~R~~~~~~~g~w~~Pgg~ve~g-e~~~~~~~RE~~EE~g~~~~~~~~--~~~---------~~h~~~~~~~~~~~   84 (128)
T TIGR00586        17 EIIITRRADGHMFAKLLEFPGGKEEGG-ETPEQAVVRELEEEIGIPQHFSEF--EKL---------EYEFYPRHITLWFW   84 (128)
T ss_pred             EEEEEEEeCCCCCCCeEECCCcccCCC-CCHHHHHHHHHHHHHCCcceeeeE--EEE---------EEEECCCcEEEEEE
Confidence            588877766655566999999999998 999999999999999998753322  221         11111122233444


Q ss_pred             EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          240 FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       240 f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      |.+...  .       +    .....+..++.|++++++.+...
T Consensus        85 ~~~~~~--~-------~----~~~~~~~~~~~W~~~~~l~~~~~  115 (128)
T TIGR00586        85 LLERWE--G-------G----PPGKEGQPEEWWVLVGLLADDFF  115 (128)
T ss_pred             EEEEEc--C-------C----CcCcccccccEEeCHHHCCccCC
Confidence            444321  1       1    11223455789999999987654

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.43  E-value=1.1e-12  Score=115.53  Aligned_cols=119  Identities=17%  Similarity=0.195  Sum_probs=73.9

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecC-CCCeEEEcc-ceecCCCCCCHHHHHHHHHHHHhCCcccccceeec-cccccCCC
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVP-TGRVILELP-AGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDL-TAFLYPST  222 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p-~g~~~wElP-aG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L-~~l~~~~~  222 (307)
                      +|+|+++ +++  ++|||+++.... .....|.+| ||++|+| |++++||+||++||||+++.  .+..+ +.+..   
T Consensus        36 av~v~i~-~~~--g~vLL~rR~~~~~~~PG~w~~~~gG~ve~G-Et~~~aa~REl~EEtGl~~~--~~~~~~~~~~~---  106 (184)
T PRK03759         36 AFSCYLF-DAD--GRLLVTRRALSKKTWPGVWTNSCCGHPQPG-ESLEDAVIRRCREELGVEIT--DLELVLPDFRY---  106 (184)
T ss_pred             EEEEEEE-cCC--CeEEEEEccCCCCCCCCcccccccCCCCCC-CCHHHHHHHHHHHHhCCCcc--ccccccceEEE---
Confidence            5555544 223  368888753211 112357776 8999998 99999999999999999884  22221 11000   


Q ss_pred             CceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChh
Q 021805          223 GCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAK  286 (307)
Q Consensus       223 ~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~k  286 (307)
                       ...+++....++.+++|++....          ..  ..+++|..++.|++++++.+++.++.
T Consensus       107 -~~~~~~~~~~~~~~~vf~~~~~~----------~~--~~~~~Ev~~~~W~~~~el~~~i~~~~  157 (184)
T PRK03759        107 -RATDPNGIVENEVCPVFAARVTS----------AL--QPNPDEVMDYQWVDPADLLRAVDATP  157 (184)
T ss_pred             -EEecCCCceeeEEEEEEEEEECC----------CC--CCChhHeeeEEEECHHHHHHHHHhCC
Confidence             00112222234566778775431          11  23667899999999999999987553

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.41  E-value=4.6e-12  Score=103.13  Aligned_cols=99  Identities=16%  Similarity=0.116  Sum_probs=63.3

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL  239 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l  239 (307)
                      ++||.++...+.....|+||||.+|+| |++.+||.||++||||+++..  ...++.+        .+..+. ....+++
T Consensus        17 ~vll~rR~~~~~~~g~w~~PgG~~~~g-E~~~~a~~Re~~EE~gl~~~~--~~~~~~~--------~~~~~~-~~~~~~~   84 (129)
T PRK10776         17 EIFITRRAADAHMAGKWEFPGGKIEAG-ETPEQALIRELQEEVGITVQH--ATLFEKL--------EYEFPD-RHITLWF   84 (129)
T ss_pred             EEEEEEecCCCCCCCeEECCceecCCC-CCHHHHHHHHHHHHHCCceec--ceEEEEE--------EeeCCC-cEEEEEE
Confidence            688877655544456899999999998 999999999999999998743  2223221        122221 1223444


Q ss_pred             EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          240 FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       240 f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      |.+... .        +.    ....|..++.|++++++.....
T Consensus        85 ~~~~~~-~--------~~----~~~~e~~~~~W~~~~~l~~~~~  115 (129)
T PRK10776         85 WLVESW-E--------GE----PWGKEGQPGRWVSQVALNADEF  115 (129)
T ss_pred             EEEEEE-C--------Cc----cCCccCCccEEecHHHCccCCC
Confidence            544321 1        11    1234566789999999987543

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.41  E-value=4.1e-12  Score=122.12  Aligned_cols=108  Identities=25%  Similarity=0.397  Sum_probs=70.7

Q ss_pred             cCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCcc-
Q 021805          155 SEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGC-  233 (307)
Q Consensus       155 ~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~-  233 (307)
                      +++  +|||+++...| +...|.+|||++|+| |++.+||+||++||||+++....+.....      ....|..|+.. 
T Consensus       212 ~~g--~VLLvrR~~~p-~~g~W~lPGG~ve~g-Et~~~Aa~REl~EETGl~v~~~~l~~~~~------~~~~f~~p~r~~  281 (340)
T PRK05379        212 QSG--HVLLVRRRAEP-GKGLWALPGGFLEQD-ETLLDACLRELREETGLKLPEPVLRGSIR------DQQVFDHPGRSL  281 (340)
T ss_pred             ECC--EEEEEEecCCC-CCCeEECCcccCCCC-CCHHHHHHHHHHHHHCCcccccccceeee------eeEEEcCCCCCC
Confidence            445  69998876544 456899999999998 99999999999999999986433322110      01244445432 


Q ss_pred             --ceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhc
Q 021805          234 --DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT  281 (307)
Q Consensus       234 --~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~  281 (307)
                        ....++|++..... +        .......+|..++.|++++++.++
T Consensus       282 ~~~~i~~~f~~~~~~~-~--------~~~~~~~de~~~~~W~~~~el~~~  322 (340)
T PRK05379        282 RGRTITHAFLFEFPAG-E--------LPRVKGGDDADKARWVPLAELLAM  322 (340)
T ss_pred             CCcEEEEEEEEEecCC-c--------cCccCCCCceeeEEEEEHHHhhhh
Confidence              23445566543211 0        011224567889999999999864

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.39  E-value=3e-12  Score=106.65  Aligned_cols=104  Identities=18%  Similarity=0.185  Sum_probs=65.8

Q ss_pred             eEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCc------
Q 021805          159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGG------  232 (307)
Q Consensus       159 ~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~------  232 (307)
                      ..+||+++.. + +...|+||+|++|+| |++.+||.||++||||+.+... +......     ....|..+..      
T Consensus        13 ~~~Llvk~~~-~-~~g~W~fPgG~ve~g-Et~~eaa~REl~EEtGl~v~~~-~i~~~~~-----~~~~~~~~~~~~~~~~   83 (132)
T cd04661          13 TLVLLVQQKV-G-SQNHWILPQGKREEG-ETLRQTAERTLKELCGNNLKAK-FYGNAPV-----GFYKYKYPKAVRNEGI   83 (132)
T ss_pred             cEEEEEEeec-C-CCCeeECCcccccCC-CCHHHHHHHHHHHhhCCCceEE-EEEecCc-----EEEEEecCcccccccC
Confidence            3577777643 2 235799999999998 9999999999999999987531 1111000     0012222211      


Q ss_pred             cceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          233 CDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       233 ~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      ....+++|.+... .        |..   ....|..++.|++++|+.+++.
T Consensus        84 ~~~~~~~f~~~~~-~--------g~~---~~~~e~~~~~W~~~~el~~~l~  122 (132)
T cd04661          84 VGAKVFFFKARYM-S--------GQF---ELSQNQVDFKWLAKEELQKYLN  122 (132)
T ss_pred             cccEEEEEEEEEe-c--------Ccc---ccCCCcceeEecCHHHHHhhcC
Confidence            1234566666542 1        111   1236788999999999998764

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.39  E-value=2.3e-12  Score=110.72  Aligned_cols=117  Identities=21%  Similarity=0.160  Sum_probs=73.4

Q ss_pred             EEEEEEEEecCCceEEEEEEeeec-CCCCeEEEcc-ceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCC
Q 021805          146 AVAVLILLDSEGETYAILTEQVRV-PTGRVILELP-AGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG  223 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~-p~g~~~wElP-aG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~  223 (307)
                      +|+++++ ++++  +|||.++... ......|++| ||+++.| |  .+||+||++||||+++...++..++.+.     
T Consensus        29 ~v~v~v~-~~~g--~vLl~kR~~~k~~~PG~W~~~~gG~v~~G-E--~eaa~REl~EE~Gl~~~~~~l~~~~~~~-----   97 (158)
T TIGR02150        29 AFSVFLF-NEEG--QLLLQRRALSKITWPGVWTNSCCSHPLPG-E--LEAAIRRLREELGIPADDVPLTVLPRFS-----   97 (158)
T ss_pred             EEEEEEE-cCCC--eEEEEeccCCCcCCCCCccccccCCCCcc-c--HHHHHHHHHHHHCCCccccceEEcceEE-----
Confidence            5555544 3333  5888654321 0123589997 7999998 8  4999999999999998654443443210     


Q ss_pred             ceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChh
Q 021805          224 CKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAK  286 (307)
Q Consensus       224 ~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~k  286 (307)
                       ..+..+.+..+..++|.+....  .          ...+++|..++.|++++|+.++++..+
T Consensus        98 -~~~~~~~g~~~~~~~f~~~~~~--~----------~~~~~~Ev~~~~W~~~~el~~~~~~~~  147 (158)
T TIGR02150        98 -YRARDAWGEHELCPVFFARAPV--P----------LNPNPEEVAEYRWVSLEELKEILKAPW  147 (158)
T ss_pred             -EEEecCCCcEEEEEEEEEecCC--c----------ccCChhHeeeEEEeCHHHHHHHHhcCc
Confidence             0111221234555667665421  1          123567999999999999999988544

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.39  E-value=4.6e-12  Score=100.77  Aligned_cols=99  Identities=26%  Similarity=0.311  Sum_probs=67.1

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCC-CccceEEE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSA-GGCDEEIS  238 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~sp-g~~~e~i~  238 (307)
                      +++|+++.+.  ....|++|||++|.+ |++.++|+||++||+|+.+.......+.          .+..+ ......+.
T Consensus        13 ~ill~kr~~~--~~~~~~~p~G~~~~~-e~~~~~a~RE~~EE~Gl~~~~~~~~~~~----------~~~~~~~~~~~~~~   79 (123)
T cd02883          13 RVLLVRRADS--PGGLWELPGGGVEPG-ETLEEAAIREVREETGLDVDVLRLLGVY----------EVESPDEGEHAVVF   79 (123)
T ss_pred             CEEEEEEcCC--CCCeEeCCcccccCC-CCHHHHHHHHHHHhhCccceeeeEEEEE----------EeeccCCCceEEEE
Confidence            5888877665  345899999999998 9999999999999999987422222222          12111 34456666


Q ss_pred             EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhc
Q 021805          239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT  281 (307)
Q Consensus       239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~  281 (307)
                      +|.+.......         . ...+.|....+|++++++.+.
T Consensus        80 ~~~~~~~~~~~---------~-~~~~~e~~~~~w~~~~~l~~~  112 (123)
T cd02883          80 VFLARLVGGEP---------T-LLPPDEISEVRWVTLDELPAL  112 (123)
T ss_pred             EEEEEeCCCCc---------C-CCCCCccceEEEEcHHHCccc
Confidence            67665432110         0 124567778899999999864

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.39  E-value=3.9e-12  Score=104.56  Aligned_cols=101  Identities=18%  Similarity=0.082  Sum_probs=70.5

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      +|.|+++  .++  ++||+++.+     ..|++|||++|+| |++.+||+||+.||||+.+  ..+..++.         
T Consensus         2 ~v~vi~~--~~~--~vLl~~~~~-----~~w~lPgG~ve~g-E~~~~aa~REl~EE~G~~~--~~~~~l~~---------   60 (118)
T cd04665           2 SVLVICF--YDD--GLLLVRHKD-----RGWEFPGGHVEPG-ETIEEAARREVWEETGAEL--GSLTLVGY---------   60 (118)
T ss_pred             EEEEEEE--ECC--EEEEEEeCC-----CEEECCccccCCC-CCHHHHHHHHHHHHHCCcc--CceEEEEE---------
Confidence            4556654  333  599988742     3699999999998 9999999999999999998  46667763         


Q ss_pred             eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhH
Q 021805          226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYREL  278 (307)
Q Consensus       226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel  278 (307)
                      +...++.......+|++.......           .....|.....|++....
T Consensus        61 ~~~~~~~~~~~~~~y~a~~~~~~~-----------~~~~~E~~~~~~~~~~~~  102 (118)
T cd04665          61 YQVDLFESGFETLVYPAVSAQLEE-----------KASYLETDGPVLFKNEPE  102 (118)
T ss_pred             EEecCCCCcEEEEEEEEEEEeccc-----------ccccccccCcEEeccCCc
Confidence            333333345566677776542211           124578888999987654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.38  E-value=3e-12  Score=107.17  Aligned_cols=119  Identities=23%  Similarity=0.152  Sum_probs=69.5

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecC-CCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcc-cccceeeccccccCCCC
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVP-TGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQL-KLEDMIDLTAFLYPSTG  223 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p-~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i-~~~~L~~L~~l~~~~~~  223 (307)
                      ++.++++. .++  +|||+++.+.. .+...|++|||.++.| |++.+||.||++||||+++ ....+.....       
T Consensus         2 ~~~~~i~~-~~g--~vLl~r~~~~~~~~~~~w~~PgG~ve~g-E~~~~a~~Re~~EE~G~~~~~~~~~~~~~~-------   70 (133)
T cd04685           2 AARVVLLD-PDD--RVLLLRGDDPDSPGPDWWFTPGGGVEPG-ESPEQAARRELREETGITVADLGPPVWRRD-------   70 (133)
T ss_pred             eEEEEEEc-CCC--eEEEEEEeCCCCCCCCEEECCcCCCCCC-CCHHHHHHHHHHHHHCCccccccceEEEEE-------
Confidence            45566552 333  68888765431 1345899999999998 9999999999999999998 3222222111       


Q ss_pred             ceeecCCCc-cceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhc
Q 021805          224 CKFFPSAGG-CDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT  281 (307)
Q Consensus       224 ~~~~~spg~-~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~  281 (307)
                       ..|...+. .....++|+++....  .+.  ..... ..+.++..+++|++++++.+.
T Consensus        71 -~~f~~~~~~~~~~~~~f~~~~~~~--~~~--~~~~~-~~E~~~~~~~~W~~~~el~~~  123 (133)
T cd04685          71 -AAFTFLGVDGRQEERFFLARTPRT--EPS--PAGWT-ALERRSILGWRWWTRAELAAT  123 (133)
T ss_pred             -EEEEecCccceeeEEEEEEEcCCc--ccc--CCCCC-hhhhhhcccccCCCHHHHhhC
Confidence             12222221 223445666654311  100  00000 011233457999999999764

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02709 nudix hydrolase

Probab=99.34  E-value=1e-11  Score=112.28  Aligned_cols=120  Identities=21%  Similarity=0.240  Sum_probs=77.0

Q ss_pred             eCCEEEEEEEEec---CCceEEEEEEeeecC-CCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccc
Q 021805          143 RGPAVAVLILLDS---EGETYAILTEQVRVP-TGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFL  218 (307)
Q Consensus       143 r~~aVaVl~il~~---~g~~~VLLvrQ~R~p-~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~  218 (307)
                      |..||.|+++..+   +++.+|||+++.+.. ...+.|.||||++|++|+++.+||+||++||+|+...  ...-++.+.
T Consensus        32 r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~--~v~vlg~L~  109 (222)
T PLN02709         32 KSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPS--LVTIISVLE  109 (222)
T ss_pred             CccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCch--heEEeeecC
Confidence            3455555544321   244589999887653 2455899999999997578999999999999999874  344444431


Q ss_pred             cCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhc
Q 021805          219 YPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT  281 (307)
Q Consensus       219 ~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~  281 (307)
                            .++..   ....++-|++.......        ..-..+++|..++.|||++++.+.
T Consensus       110 ------~~~t~---sg~~V~P~V~~~~~~~~--------~~~~~np~EV~~vf~vPL~~ll~~  155 (222)
T PLN02709        110 ------PFVNK---KGMSVAPVIGFLHDKKA--------FKPLPNPAEVEEIFDVPLEMFLKD  155 (222)
T ss_pred             ------CeECC---CCCEEEEEEEEecCCCC--------ccccCChhhhheeEEecHHHHhCC
Confidence                  23322   23345666654321100        000247789999999999998643

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.34  E-value=2e-11  Score=100.45  Aligned_cols=52  Identities=27%  Similarity=0.437  Sum_probs=41.6

Q ss_pred             EEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeec
Q 021805          161 AILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDL  214 (307)
Q Consensus       161 VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L  214 (307)
                      +||++|.+.+ +...|+||||++|+| |++.+||.||++||||+++....+..+
T Consensus        17 ~lL~~r~~~~-~~~~w~lPgG~ve~~-E~~~~aa~REl~EE~g~~~~~~~l~~~   68 (118)
T cd04674          17 LLVIRRGIEP-GRGKLALPGGFIELG-ETWQDAVARELLEETGVAVDPADIRLF   68 (118)
T ss_pred             EEEEEeecCC-CCCeEECCceecCCC-CCHHHHHHHHHHHHHCCcccccEEEEE
Confidence            6677665544 456899999999998 999999999999999999864444443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.31  E-value=3.3e-11  Score=100.17  Aligned_cols=90  Identities=18%  Similarity=0.067  Sum_probs=57.7

Q ss_pred             EEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCc--cceEEEEEEEEEechhHHHH
Q 021805          175 ILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGG--CDEEISLFLYRGRVDKEIIM  252 (307)
Q Consensus       175 ~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~--~~e~i~lf~~~~~~~~~~i~  252 (307)
                      .|++|||.+|+| |++.+||+||++||||+++..... .+           ....++.  .+...+++++....+..  .
T Consensus        25 ~~~lPgG~ve~~-E~~~~aa~Rel~EEtGl~~~~~~~-~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~~--~   89 (126)
T cd04663          25 GFQIVKGTVEPG-ETPEAAALRELQEESGLPSFLSDY-IL-----------HVWERRFYQKRHFWHLTLCEVDQDLP--D   89 (126)
T ss_pred             cEECCCccCCCC-CCHHHHHHHHHHHHHCCeeeeeee-cc-----------eeeeCCEeeccEEEEEEEEEecCCCc--c
Confidence            389999999998 999999999999999999721110 11           1112232  45556666665432111  1


Q ss_pred             HhccCCCccCCCCceEEEEEEchhhHhhc
Q 021805          253 QLQGKETGLRDHGELIKVRVVPYRELWRT  281 (307)
Q Consensus       253 ~~~g~~~g~~~~~E~i~v~wvpleel~~~  281 (307)
                      .+.+...  .++++.+++.|++++++...
T Consensus        90 ~~~~~~~--~~E~~~i~~~Wv~l~~~~~~  116 (126)
T cd04663          90 SWVHFVQ--DDGGHEFRFFWVDLASCLDE  116 (126)
T ss_pred             cccCccc--CCCCceEEEEEEcccccccc
Confidence            2223222  24777888999999998554

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=99.20  E-value=3e-12  Score=119.17  Aligned_cols=120  Identities=25%  Similarity=0.333  Sum_probs=82.1

Q ss_pred             EEEEEeCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeecccc
Q 021805          138 GIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAF  217 (307)
Q Consensus       138 ~~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l  217 (307)
                      +.+|.|.+-|+|.++++.++ ++.||.||.|++.|  +|..+||.+|+| |++++||+||+.||||++++  .+..... 
T Consensus       180 n~~yPr~dPvVIm~li~~d~-~~~LL~R~~r~~~g--l~t~lAGFlEpG-ES~eeav~REtwEEtGi~V~--~I~~~as-  252 (345)
T KOG3084|consen  180 NVIYPRTDPVVIMLLIDHDG-KHALLGRQKRYPPG--LWTCLAGFLEPG-ESIEEAVRRETWEETGIEVE--VISYVAS-  252 (345)
T ss_pred             CeeccCCCCeEEEEEEcCCC-CEeeeecccCCCCc--hhhhhhccCCcc-ccHHHHHHHHHHHHhCceee--eEeeeec-
Confidence            56778888888888877666 48999999998765  799999999998 99999999999999999994  4444332 


Q ss_pred             ccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCC-ceEEEEEEchhhHhhccC
Q 021805          218 LYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHG-ELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       218 ~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~-E~i~v~wvpleel~~~i~  283 (307)
                               -|.|-.....+..+++        +....++.  ..+.+ |..+..|++.+|+.+.+.
T Consensus       253 ---------QPWP~~p~SLMIgc~a--------la~~~~~I--~vd~dlEleDaqwF~r~ev~~aL~  300 (345)
T KOG3084|consen  253 ---------QPWPLMPQSLMIGCLA--------LAKLNGKI--SVDKDLELEDAQWFDREEVKSALT  300 (345)
T ss_pred             ---------CCCCCCchHHHHHHHH--------HHhhCCcc--ccCcchhhhhcccccHHHHHHHHH
Confidence                     2333111111111111        11111222  23555 888899999999876553

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.19  E-value=2e-11  Score=112.98  Aligned_cols=115  Identities=22%  Similarity=0.256  Sum_probs=83.4

Q ss_pred             EEEEeCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccc
Q 021805          139 IVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFL  218 (307)
Q Consensus       139 ~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~  218 (307)
                      ..|.|-+-++|+++.+ .+  ++||.++.|..  ..++.+-||.||+| ||+++|++||+.||+|++++  ++.++++  
T Consensus       138 ~~fPR~dP~vIv~v~~-~~--~ilLa~~~~h~--~g~yS~LAGFVE~G-ETlE~AV~REv~EE~Gi~V~--~vrY~~S--  207 (279)
T COG2816         138 EHFPRIDPCVIVAVIR-GD--EILLARHPRHF--PGMYSLLAGFVEPG-ETLEQAVAREVFEEVGIKVK--NVRYVGS--  207 (279)
T ss_pred             ccCCCCCCeEEEEEec-CC--ceeecCCCCCC--CcceeeeeecccCC-ccHHHHHHHHHHHhhCeEEe--eeeEEec--
Confidence            3567777666666642 22  38898888887  35788999999998 99999999999999999994  7887764  


Q ss_pred             cCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          219 YPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       219 ~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                            ..+|-|.   -.|.-|.++....  +|         .++++|..++.|++.+|+..++.
T Consensus       208 ------QPWPfP~---SLMigf~aey~sg--eI---------~~d~~Eleda~WFs~~evl~~L~  252 (279)
T COG2816         208 ------QPWPFPH---SLMLGFMAEYDSG--EI---------TPDEGELEDARWFSRDEVLPALP  252 (279)
T ss_pred             ------cCCCCch---hhhhhheeeeccc--cc---------cCCcchhhhccccCHhHHhhhcC
Confidence                  2455443   2344466655422  12         25778999999999999655553

>PRK08999 hypothetical protein; Provisional

Probab=99.18  E-value=2.1e-10  Score=108.44  Aligned_cols=98  Identities=16%  Similarity=0.104  Sum_probs=65.8

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL  239 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l  239 (307)
                      ++||+++.+.......|+||||.+|+| |++.+||.||++||||+.+..  ...+...        .+..++ .+..+++
T Consensus        18 ~vLL~kR~~~~~~~g~w~~PgG~ve~g-E~~~~aa~RE~~EE~Gl~~~~--~~~l~~~--------~h~~~~-~~~~i~~   85 (312)
T PRK08999         18 RILLARRPEGKHQGGLWEFPGGKVEPG-ETVEQALARELQEELGIEVTA--ARPLITV--------RHDYPD-KRVRLDV   85 (312)
T ss_pred             eEEEEEecCCCCCCCeEECCccCCCCC-CCHHHHHHHHHHHHhCCceec--ceeEEEE--------EEEcCC-CeEEEEE
Confidence            688887765544556899999999998 999999999999999998753  2223221        122222 2345666


Q ss_pred             EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805          240 FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT  282 (307)
Q Consensus       240 f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i  282 (307)
                      |.+....         +    .....|..+++|++++++.++.
T Consensus        86 y~~~~~~---------~----~~~~~e~~~~~Wv~~~el~~~~  115 (312)
T PRK08999         86 RRVTAWQ---------G----EPHGREGQPLAWVAPDELAVYP  115 (312)
T ss_pred             EEEEEec---------C----cccCccCCccEEecHHHcccCC
Confidence            6554321         1    1123456678999999998754

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=99.16  E-value=1.9e-10  Score=106.32  Aligned_cols=137  Identities=20%  Similarity=0.194  Sum_probs=108.6

Q ss_pred             CCcEEeEEEEEeCCEEEEEEEEecCCceEEEEEEeeecCCC---------------------------CeEEEccceecC
Q 021805          132 TGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTG---------------------------RVILELPAGMLD  184 (307)
Q Consensus       132 ~G~~~~~~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g---------------------------~~~wElPaG~vD  184 (307)
                      ||-+........+++|+++++  +..+++++|++|+|++.-                           +.++||++|.||
T Consensus       217 NGi~knWDl~k~hdSvt~iL~--n~srk~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~Vd  294 (405)
T KOG4432|consen  217 NGITKNWDLAKCHDSVTCILV--NMSRKELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGRVD  294 (405)
T ss_pred             cCcccccchhhCCCceEEEEE--eccchheehhhhcCcceeecceeecccCCCCcccccccccCCccceeeeeeecccCC
Confidence            666655556667899999977  455668999999998861                           347899999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCC
Q 021805          185 DDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDH  264 (307)
Q Consensus       185 ~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~  264 (307)
                      .. -+-.+.|+||.-||+|+++.++++..+..         +.+-.|.+.....+|+++.....     ..++++|..++
T Consensus       295 ~p-~s~~e~a~~e~veecGYdlp~~~~k~va~---------y~sGVG~SG~~QTmfy~eVTdA~-----rsgpGgg~~ee  359 (405)
T KOG4432|consen  295 DP-FSDPEKAARESVEECGYDLPEDSFKLVAK---------YISGVGQSGDTQTMFYVEVTDAR-----RSGPGGGEKEE  359 (405)
T ss_pred             CC-cccHHHHHHHHHHHhCCCCCHHHHhhhhe---------eecccCCcCCeeEEEEEEeehhh-----ccCCCCCcccc
Confidence            86 77889999999999999999888777753         66666777777788887654321     24677788899


Q ss_pred             CceEEEEEEchhhHhhccCCh
Q 021805          265 GELIKVRVVPYRELWRTTPDA  285 (307)
Q Consensus       265 ~E~i~v~wvpleel~~~i~D~  285 (307)
                      +|.|++.-++++++..+..++
T Consensus       360 ~E~IEvv~lsle~a~~~~~q~  380 (405)
T KOG4432|consen  360 DEDIEVVRLSLEDAPSLYRQH  380 (405)
T ss_pred             cceeeEEEechhhhhHHHhcc
Confidence            999999999999999998744

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.13  E-value=7.4e-10  Score=97.91  Aligned_cols=123  Identities=15%  Similarity=0.130  Sum_probs=69.0

Q ss_pred             CceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCccccccee--eccccccC--CCCceee----c
Q 021805          157 GETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMI--DLTAFLYP--STGCKFF----P  228 (307)
Q Consensus       157 g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~--~L~~l~~~--~~~~~~~----~  228 (307)
                      +..++|++++..    ...|.||||++|++ |++.+||.||++||||+.+....+.  .++.+..-  .....+|    .
T Consensus        47 ~~l~vLl~~r~~----~g~walPGG~v~~~-E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~~~vy~~~~~  121 (186)
T cd03670          47 PILQFVAIKRPD----SGEWAIPGGMVDPG-EKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVEVYKGYVD  121 (186)
T ss_pred             CeeEEEEEEeCC----CCcCcCCeeeccCC-CCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccccEEEecccc
Confidence            345677777632    24699999999998 9999999999999997754211110  00000000  0001133    3


Q ss_pred             CCCccc----eEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhHHHHH
Q 021805          229 SAGGCD----EEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAI  291 (307)
Q Consensus       229 spg~~~----e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ktl~al  291 (307)
                      .|..++    +.+.+++. .. ..+..    +. ......++..+++|++++++..+.+|.+.|..-
T Consensus       122 dpr~td~~w~~Tva~~f~-~~-~~~~~----~~-~~~~a~dda~~a~W~~v~~l~~L~~dH~~Il~~  181 (186)
T cd03670         122 DPRNTDNAWMETVAVNFH-DE-DGNDV----EN-LPLEAGDDAGSVRWQDIDSKLPLYANHSQFLKK  181 (186)
T ss_pred             CCCCCCcceEEEEEEEEE-ec-Ccccc----cc-cccCCCCchheeEEEEcccccccccCHHHHHHH
Confidence            343322    23332222 11 00000    00 001234577889999999999988899877644

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.07  E-value=2e-09  Score=87.19  Aligned_cols=44  Identities=32%  Similarity=0.540  Sum_probs=35.3

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHH-HHHHHHHHHhCCccc
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVG-TAVREVEEETGIQLK  207 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~-AA~REl~EETGl~i~  207 (307)
                      ++++.++.. +.  ..|++|||++|.+ |++.+ ||+||++||||+++.
T Consensus        25 ~vl~~~~~~-~~--~~~~~PgG~ve~~-e~~~~~aa~RE~~EEtGl~~~   69 (161)
T COG0494          25 EVLLAQRRD-DG--GLWELPGGKVEPG-EELPEEAAARELEEETGLRVK   69 (161)
T ss_pred             EEeEEEccc-cC--CceecCCcccCCC-CchHHHHHHHHHHHHhCCeee
Confidence            566654433 22  4799999999998 87788 999999999999986

>PLN02791 Nudix hydrolase homolog

Probab=98.98  E-value=1.5e-09  Score=113.27  Aligned_cols=121  Identities=22%  Similarity=0.185  Sum_probs=77.2

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCC---CCeEEEc-cceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCC
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPT---GRVILEL-PAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPS  221 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~---g~~~wEl-PaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~  221 (307)
                      +|.|.++  +..++++||.+|  ...   .++.|++ |||+++.| |+..+||+||++||+|+.+....+..++.+..  
T Consensus        34 AvhVwIf--n~~~gelLLQkR--S~~K~~~PG~WDiS~gGHv~aG-Es~~eAA~REL~EELGI~l~~~~l~~l~~~~~--  106 (770)
T PLN02791         34 AVHVWIY--SESTQELLLQRR--ADCKDSWPGQWDISSAGHISAG-DTSLLSAQRELEEELGIILPKDAFELLFVFLQ--  106 (770)
T ss_pred             EEEEEEE--ECCCCeEEEEEe--cCCCCCCCCcccCcCCCCCCCC-CCHHHHHHHHHHHHhCCCCChhheeeeeeEEE--
Confidence            5555554  322236777444  332   2448888 79999998 99999999999999999976555555543100  


Q ss_pred             CCceeecCCC--ccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          222 TGCKFFPSAG--GCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       222 ~~~~~~~spg--~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                         ......|  ..++..++|++....+.+ +.    ..  ..+++|+.+++|++++|+.+++.
T Consensus       107 ---~~~~~~g~~~e~E~~~VYlv~~~~~~p-~~----~~--~lq~eEV~~v~wvsl~El~~~l~  160 (770)
T PLN02791        107 ---ECVINDGKFINNEYNDVYLVTTLDPIP-LE----AF--TLQESEVSAVKYMSIEEYKSALA  160 (770)
T ss_pred             ---EeeccCCCcceeeEEEEEEEEECCCCC-cc----cC--CCChhhhheeEEEcHHHHHHHHh
Confidence               0111222  245777888875321110 00    01  24678999999999999998875

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=98.97  E-value=3.2e-09  Score=95.59  Aligned_cols=118  Identities=25%  Similarity=0.234  Sum_probs=74.8

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCC-CCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCc
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPT-GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGC  224 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~-g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~  224 (307)
                      +|.|.++...+++..|||+++.|.-- .++...||||+.|+.|++...||.||.+||.|+...  .+..++.+      .
T Consensus        45 aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~--~~~~~g~l------~  116 (246)
T KOG3069|consen   45 AVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPE--LVDVLGAL------P  116 (246)
T ss_pred             cEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHH--Hhhhhhhc------c
Confidence            44444443234667899988876532 344788999999998788999999999999999873  44444432      2


Q ss_pred             eeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhc
Q 021805          225 KFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT  281 (307)
Q Consensus       225 ~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~  281 (307)
                      .++...+..-..+..|+....+-          .......+|...+.|||++++..-
T Consensus       117 ~~~~r~~~~v~p~v~~l~~~~~l----------~~~~ln~gEv~~~F~VPL~~ll~~  163 (246)
T KOG3069|consen  117 PFVLRSGWSVFPVVGFLSDKKIL----------PSLRLNSGEVESAFWVPLTDLLLP  163 (246)
T ss_pred             ceeeccCcccceeEEEEeccccc----------ccccCCchheeeeeeeeHHHHhhh
Confidence            23333333222222233221110          012457899999999999998643

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=98.84  E-value=1.8e-08  Score=92.91  Aligned_cols=123  Identities=21%  Similarity=0.181  Sum_probs=66.5

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCC---CeEEEcc-ceecCCC-------------CCC---HHHHHHHHHHHHhCCc
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTG---RVILELP-AGMLDDD-------------KGD---FVGTAVREVEEETGIQ  205 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g---~~~wElP-aG~vD~g-------------~Et---~~~AA~REl~EETGl~  205 (307)
                      ++.|+++ +++|  ++||  |.|.+.+   +..|+.. +|++-.|             +|+   ..+||+||++|||||.
T Consensus        58 a~~v~i~-n~~g--~lLL--QkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~  132 (247)
T PLN02552         58 AFSVFLF-NSKY--ELLL--QQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIP  132 (247)
T ss_pred             EEEEEEE-cCCC--eEEE--EEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCC
Confidence            5666655 2334  5777  4454443   3478555 3443332             011   6789999999999999


Q ss_pred             ccc---cceeeccccccCC-CCceeecCCCcc-ceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhh
Q 021805          206 LKL---EDMIDLTAFLYPS-TGCKFFPSAGGC-DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWR  280 (307)
Q Consensus       206 i~~---~~L~~L~~l~~~~-~~~~~~~spg~~-~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~  280 (307)
                      +..   .++..++.+.... .....|++.+.. ++..++|+. ......       ..  .++++|..+++|++++|+.+
T Consensus       133 ~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~-~~~~~~-------~l--~lq~eEV~~~~wvs~~el~~  202 (247)
T PLN02552        133 AEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFI-RPVRDV-------KV--NPNPDEVADVKYVNREELKE  202 (247)
T ss_pred             ccccccccceeeeEEEEecccccccccCCCccceEEEEEEEE-EecCCC-------cc--cCCHHHhheEEEEeHHHHHH
Confidence            642   2344454321100 000112222222 344455443 222111       11  24678999999999999998


Q ss_pred             ccC
Q 021805          281 TTP  283 (307)
Q Consensus       281 ~i~  283 (307)
                      ++.
T Consensus       203 ~~~  205 (247)
T PLN02552        203 MMR  205 (247)
T ss_pred             HHh
Confidence            864

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=98.76  E-value=3.4e-08  Score=82.94  Aligned_cols=123  Identities=16%  Similarity=0.160  Sum_probs=72.1

Q ss_pred             EEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCcee
Q 021805          147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKF  226 (307)
Q Consensus       147 VaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~  226 (307)
                      +++|++..+....+|||+.-.+.+.   .|-+|+|.+|++ |+..+||.||..||.|+......  .++.+.       -
T Consensus        12 agCi~~r~~~~~ieVLlvsSs~~~~---~wi~PKGGwE~d-E~~~eAA~REt~EEAGv~G~l~~--~~~g~~-------~   78 (145)
T KOG2839|consen   12 AGCICYRSDKEKIEVLLVSSSKKPH---RWIVPKGGWEPD-ESVEEAALRETWEEAGVKGKLGR--LLGGFE-------D   78 (145)
T ss_pred             EEeeeeeecCcceEEEEEecCCCCC---CccCCCCCCCCC-CCHHHHHHHHHHHHhCceeeeec--cccchh-------h
Confidence            3445544333335788887655432   477999999997 99999999999999999874322  132211       1


Q ss_pred             ecCCCccce-EEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhHHHHH
Q 021805          227 FPSAGGCDE-EISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAI  291 (307)
Q Consensus       227 ~~spg~~~e-~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ktl~al  291 (307)
                      +.+....+. .-.+|...   ..+++..+      ...+.|.-+.+|+.++|+...+.+....+|+
T Consensus        79 ~~~~~~~~~~k~~~~~l~---v~e~le~w------p~~~~~~r~r~W~~ledA~~~~~~~~m~~al  135 (145)
T KOG2839|consen   79 FLSKKHRTKPKGVMYVLA---VTEELEDW------PESEHEFREREWLKLEDAIELCQHKWMKAAL  135 (145)
T ss_pred             ccChhhcccccceeehhh---hhhhcccC------hhhhcccceeEEeeHHHHHHHHhhHHHHHHH
Confidence            111111111 11223211   11222111      1234567889999999999998855554443

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=98.66  E-value=1.3e-07  Score=77.89  Aligned_cols=123  Identities=21%  Similarity=0.241  Sum_probs=81.5

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCC----CCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCC
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPT----GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPS  221 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~----g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~  221 (307)
                      +++|+++....|.-.|||+ .+--|.    +...|.+|.|..+.| |++..||+||.-||+||.++ +.+..+++     
T Consensus         5 SAGvLlYR~~aG~v~VLLv-HPGGPFWa~kD~GAWSIPKGey~~g-Edp~~AArREf~EE~Gi~vd-GP~~~lG~-----   76 (161)
T COG4119           5 SAGVLLYRARAGVVDVLLV-HPGGPFWAGKDDGAWSIPKGEYTGG-EDPWLAARREFSEEIGICVD-GPRIDLGS-----   76 (161)
T ss_pred             cceeEEEEecCCCEEEEEe-cCCCCccccCCCCcccccccccCCC-cCHHHHHHHHhhhhhceeec-Cchhhhhh-----
Confidence            5566666655565455554 222222    234799999999998 99999999999999999995 56667764     


Q ss_pred             CCceeecCCCccceEEEEEEEEEechhHHHHH------hccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          222 TGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQ------LQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       222 ~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~------~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                           +.-+|+  ..+..|.++...+...++.      |....+..+.--|...+-|+++.++...+.
T Consensus        77 -----~kQ~GG--KvVta~~veae~Dva~~rSntFe~eWPprSG~M~~FPEVDRagWF~l~eAr~Kil  137 (161)
T COG4119          77 -----LKQSGG--KVVTAFGVEAELDVADARSNTFELEWPPRSGKMRKFPEVDRAGWFPLAEARTKIL  137 (161)
T ss_pred             -----hccCCC--cEEEEEeeeeeeehhhhhcceeeeecCCCCCccccCcccccccceecHHHHhHHh
Confidence                 334444  2455666666555544432      222222234556888899999999976664

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=98.57  E-value=1.4e-07  Score=87.67  Aligned_cols=123  Identities=20%  Similarity=0.191  Sum_probs=85.9

Q ss_pred             EeCCEEEEEEEEecCCceEEEEEEeeecCC-------------------------CCeEEEccceecCCCCCCHHHHHHH
Q 021805          142 ARGPAVAVLILLDSEGETYAILTEQVRVPT-------------------------GRVILELPAGMLDDDKGDFVGTAVR  196 (307)
Q Consensus       142 ~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~-------------------------g~~~wElPaG~vD~g~Et~~~AA~R  196 (307)
                      .+-++|.|+++.  ....++||+||+|.++                         -++++|++||.||.+ -++.+-|..
T Consensus        24 q~~~~v~ill~~--r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke-~s~~eia~e  100 (405)
T KOG4432|consen   24 QKMSSVSILLFH--RDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKE-LSPREIASE  100 (405)
T ss_pred             hhccceEEEEEc--cchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccc-cCHHHHhHH
Confidence            345678888663  3445799999999875                         145899999999996 899999999


Q ss_pred             HHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchh
Q 021805          197 EVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYR  276 (307)
Q Consensus       197 El~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvple  276 (307)
                      |+.||+|+++++++|+.+..         +-...+.+...+++|+|+..... .+    ..++|  --.+.+.+.-+.++
T Consensus       101 ev~eecgy~v~~d~l~hv~~---------~~~g~~~s~sa~~l~y~ei~es~-ki----s~ggg--v~~~~~~~~~~a~e  164 (405)
T KOG4432|consen  101 EVAEECGYRVDPDDLIHVIT---------FVVGAHQSGSAQHLYYAEIDESM-KI----SEGGG--VITKVYYPVNVARE  164 (405)
T ss_pred             HHHHHhCCcCChhHceEEEE---------EEeccccCccchheeeeecchhh-cc----ccCCc--eeeEEEEeehhhHH
Confidence            99999999999999988864         33334445567889998764321 11    11122  12345555566667


Q ss_pred             hHhhccC
Q 021805          277 ELWRTTP  283 (307)
Q Consensus       277 el~~~i~  283 (307)
                      +....+.
T Consensus       165 ~ar~~i~  171 (405)
T KOG4432|consen  165 IARPAIG  171 (405)
T ss_pred             HHHHhhc
Confidence            7666654

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=98.24  E-value=8.8e-07  Score=82.83  Aligned_cols=109  Identities=18%  Similarity=0.227  Sum_probs=65.0

Q ss_pred             cCCceEEEEEEe-eecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCcc
Q 021805          155 SEGETYAILTEQ-VRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGC  233 (307)
Q Consensus       155 ~~g~~~VLLvrQ-~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~  233 (307)
                      +.. ++|++++. .........|-+|+|.|+++ |++.++|+||++||||++..-.++..+.         ..+.+... 
T Consensus       124 n~~-~eVlVv~e~d~~~~~~~~wK~ptG~v~~~-e~i~~gavrEvkeetgid~ef~eVla~r---------~~H~~~~~-  191 (295)
T KOG0648|consen  124 NKK-KEVLVVQEKDGAVKIRGGWKLPTGRVEEG-EDIWHGAVREVKEETGIDTEFVEVLAFR---------RAHNATFG-  191 (295)
T ss_pred             cCC-ceeEEEEecccceeecccccccceEeccc-ccchhhhhhhhHHHhCcchhhhhHHHHH---------hhhcchhh-
Confidence            443 46777643 33334566899999999998 9999999999999999965432322222         13333322 


Q ss_pred             ceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          234 DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       234 ~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      -...++|+.+...+.. +   +  .  .....|+....|+|++|......
T Consensus       192 ~~ksd~f~~c~L~p~s-~---~--i--~~~~~ei~~~~Wmp~~e~v~qp~  233 (295)
T KOG0648|consen  192 LIKSDMFFTCELRPRS-L---D--I--TKCKREIEAAAWMPIEEYVSQPL  233 (295)
T ss_pred             cccccceeEEEeeccc-c---c--c--chhHHHHHHHhcccHHHhhcccc
Confidence            1122333333332221 1   0  1  23455666679999998866554

>PLN02839 nudix hydrolase

Probab=98.10  E-value=2.7e-05  Score=75.22  Aligned_cols=140  Identities=17%  Similarity=0.226  Sum_probs=87.3

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCC---CeEE-EccceecCCCCCCHHHHHHHHHHHHhCCccc-ccceeeccccccC
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTG---RVIL-ELPAGMLDDDKGDFVGTAVREVEEETGIQLK-LEDMIDLTAFLYP  220 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g---~~~w-ElPaG~vD~g~Et~~~AA~REl~EETGl~i~-~~~L~~L~~l~~~  220 (307)
                      +|-+-.++..+++.++.+  +.|....   .++| .+.||.+..| |++.++++||..||.|+... ...++..+.+.  
T Consensus       205 GVHlNGyv~~~g~~~lWV--~RRS~tK~t~PGmLDn~VAGGi~aG-esp~etliREa~EEAgLp~~l~~~~~~~G~Vs--  279 (372)
T PLN02839        205 GVHMNGYVERDGQKFLWI--GKRSLSKSTYPGMLDHLVAGGLPHG-ISCGENLVKECEEEAGISKAIADRAIAVGAVS--  279 (372)
T ss_pred             EEEEEEEEecCCCeEEEe--eccCCCCCCCCChhhhccccCccCC-CCHHHHHHHHHHHHcCCCHHHHhcceEeEEEE--
Confidence            344444444445444444  3344432   3344 4679999998 99999999999999999753 12455555431  


Q ss_pred             CCCceeecCCC-ccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCCh---hHHHHHHHHHH
Q 021805          221 STGCKFFPSAG-GCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDA---KVLTAIALYEM  296 (307)
Q Consensus       221 ~~~~~~~~spg-~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~---ktl~al~L~~~  296 (307)
                          .++..+. ...+.  +|++....+.+-+       . ...++|..+..+++++|+.+.+.++   |.=+|+.+...
T Consensus       280 ----Y~~~~~~g~~~ev--ly~YDLeLP~df~-------P-~~qDGEVe~F~Lm~v~EV~~~l~~~~~fKpn~aLViiDF  345 (372)
T PLN02839        280 ----YMDIDQYCFKRDV--LFCYDLELPQDFV-------P-KNQDGEVESFKLIPVAQVANVIRKTSFFKANCSLVIIDF  345 (372)
T ss_pred             ----EEEEcCCccccCE--EEEeeeecCCccc-------c-CCCccceeEEEEecHHHHHHHHHcCCCCCcccHHHHHHH
Confidence                1222332 22333  3444444333211       1 2478999999999999999888643   45567778889


Q ss_pred             HHhcCCCC
Q 021805          297 ASKEELLP  304 (307)
Q Consensus       297 ~~~~g~lp  304 (307)
                      +-++|.+-
T Consensus       346 LiRhG~It  353 (372)
T PLN02839        346 LFRHGFIR  353 (372)
T ss_pred             HHHcCCCC
Confidence            99999874

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=97.95  E-value=0.0001  Score=58.60  Aligned_cols=44  Identities=9%  Similarity=0.115  Sum_probs=34.5

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCC
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGI  204 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl  204 (307)
                      +++|.+|...+.-+++||||+|.++.+ ++.+++..||+.||.++
T Consensus        15 ~~ll~kR~~~gl~~glwefP~~~~~~~-~~~~~~~~~~~~~~~~~   58 (118)
T cd03431          15 RVLLEKRPEKGLLAGLWEFPSVEWEEE-ADGEEALLSALKKALRL   58 (118)
T ss_pred             eEEEEECCCCCCCCcceeCCCccccCC-cCHHHHHHHHHHHHhCc
Confidence            587766544444456999999999987 88899999999999764

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=97.58  E-value=0.00018  Score=62.60  Aligned_cols=121  Identities=17%  Similarity=0.079  Sum_probs=72.2

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecC-CCCeEE-EccceecCCCCCCHHHHHHHHHHHHhCCcccccceee-ccccccCCC
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVP-TGRVIL-ELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMID-LTAFLYPST  222 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p-~g~~~w-ElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~-L~~l~~~~~  222 (307)
                      |-++.++ +.+|  ++||+|+.-.- .-...| .-..|+=-+| |+..+||+|-+.+|+|+++...+... +..+-    
T Consensus        35 AFS~~lF-ne~g--~LLltrRA~~K~twP~vWTNSvCsHP~~~-es~~~A~~rRl~~ELGie~~~~d~~~il~rf~----  106 (185)
T COG1443          35 AFSSFLF-NERG--QLLLTRRALSKKTWPGVWTNSVCSHPLPG-ESNEDAARRRLAYELGIEPDQYDKLEILPRFR----  106 (185)
T ss_pred             hhheeEE-CCCC--ceeeehhhhhcccCcccccccccCCCcCC-CchHHHHHHHHHHHhCCCCcccCccccccceE----
Confidence            4456655 2344  47765542110 011123 2334555577 99999999999999999986312222 21110    


Q ss_pred             CceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChh
Q 021805          223 GCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAK  286 (307)
Q Consensus       223 ~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~k  286 (307)
                      -.+.+++...-+|.+.++.+......            .++++|..+.+|++++++.++..+..
T Consensus       107 YrA~~~~~~~E~Eic~V~~~~~~~~~------------~~npdEV~~~~wv~~e~l~~~~~~~~  158 (185)
T COG1443         107 YRAADPDGIVENEICPVLAARLDSAL------------DPNPDEVMDYRWVSPEDLKEMVDATP  158 (185)
T ss_pred             EeccCCCCcceeeeeeEEEEeecCCC------------CCChHHhhheeccCHHHHHHhhcCCc
Confidence            01123344445677777777654311            24778999999999999999987443

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=96.06  E-value=0.0053  Score=55.35  Aligned_cols=28  Identities=32%  Similarity=0.421  Sum_probs=26.0

Q ss_pred             eEEEccceecCCCCCCHHHHHHHHHHHHh
Q 021805          174 VILELPAGMLDDDKGDFVGTAVREVEEET  202 (307)
Q Consensus       174 ~~wElPaG~vD~g~Et~~~AA~REl~EET  202 (307)
                      ..|.+||||+|+| |..-.+.+||+.||.
T Consensus       150 ~~WAiPGGmvdpG-E~vs~tLkRef~eEa  177 (275)
T KOG4195|consen  150 GEWAIPGGMVDPG-EKVSATLKREFGEEA  177 (275)
T ss_pred             CcccCCCCcCCch-hhhhHHHHHHHHHHH
Confidence            3699999999998 999999999999995

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=95.95  E-value=0.014  Score=46.77  Aligned_cols=51  Identities=20%  Similarity=0.220  Sum_probs=26.8

Q ss_pred             EecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCccc
Q 021805          153 LDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK  207 (307)
Q Consensus       153 l~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~  207 (307)
                      ++++|  +++|.+|...+.-+++||||.--++.  ++..+.+.+.+.+..|+.+.
T Consensus         5 ~~~~~--~~Ll~kRp~~gll~GLwefP~~e~~~--~~~~~~l~~~~~~~~~~~~~   55 (114)
T PF14815_consen    5 IRSQG--RVLLEKRPEKGLLAGLWEFPLIESDE--EDDEEELEEWLEEQLGLSIR   55 (114)
T ss_dssp             EETTS--EEEEEE--SSSTTTT-EE--EEE-SS--S-CHHHHHHHTCCSSS-EEE
T ss_pred             EEeCC--EEEEEECCCCChhhcCcccCEeCccC--CCCHHHHHHHHHHHcCCChh
Confidence            33444  58886665544545699999977774  33355555666677787653

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=94.32  E-value=0.0086  Score=56.95  Aligned_cols=100  Identities=22%  Similarity=0.261  Sum_probs=61.8

Q ss_pred             cCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccc
Q 021805          155 SEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCD  234 (307)
Q Consensus       155 ~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~  234 (307)
                      ++...++||+.+...    .-|.+|-|++..+ |+-.+||.||+.||||.+... .+.+           ..+..-...+
T Consensus        91 d~~~sr~llv~g~qa----~sw~fprgK~~kd-esd~~caiReV~eetgfD~sk-ql~~-----------~e~Ie~nI~d  153 (348)
T KOG2937|consen   91 DEKRSRCLLVKGWQA----SSWSFPRGKISKD-ESDSDCAIREVTEETGFDYSK-QLQD-----------NEGIETNIRD  153 (348)
T ss_pred             hhhhhhhheeeceec----ccccccCcccccc-chhhhcchhcccchhhcCHHH-Hhcc-----------ccCcccchhh
Confidence            344456888877653    2499999999996 999999999999999999852 2211           1122223445


Q ss_pred             eEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHh
Q 021805          235 EEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELW  279 (307)
Q Consensus       235 e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~  279 (307)
                      +...+|+..+....-.   ..+     +---|....+|..++++.
T Consensus       154 q~~~~fIi~gvs~d~~---f~~-----~v~~eis~ihW~~l~~l~  190 (348)
T KOG2937|consen  154 QLVRLFIINGVSEDTN---FNP-----RVRKEISKIHWHYLDHLV  190 (348)
T ss_pred             ceeeeeeeccceeeee---cch-----hhhccccceeeeehhhhc
Confidence            5666666532211000   000     123355567899999883

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=94.01  E-value=0.97  Score=40.16  Aligned_cols=84  Identities=20%  Similarity=0.259  Sum_probs=45.8

Q ss_pred             cCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCccccc-cee---eccccccCCCCceeecC-
Q 021805          155 SEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLE-DMI---DLTAFLYPSTGCKFFPS-  229 (307)
Q Consensus       155 ~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~-~L~---~L~~l~~~~~~~~~~~s-  229 (307)
                      ..+..+|||.+. .    ...+-||||.+.+| |+.+++..|.|.+-.|..-... ++.   .++...-+.+...+||. 
T Consensus        54 ~h~~PHvLLLq~-~----~~~fkLPGg~l~~g-E~e~~gLkrkL~~~l~~~~~~~~~w~vge~l~~WwRp~Fe~~~YPYl  127 (188)
T PF13869_consen   54 EHGHPHVLLLQI-G----NTFFKLPGGRLRPG-EDEIEGLKRKLTEKLSPEDGVDPDWEVGECLGTWWRPNFEPFMYPYL  127 (188)
T ss_dssp             ETTEEEEEEEEE-T----TTEEE-SEEE--TT---HHHHHHHHHHHHHB-SSSS----EEEEEEEEEEESSSSS--BSS-
T ss_pred             cCCCcEEEEEec-c----CccccCCccEeCCC-CChhHHHHHHHHHHcCCCcCCCCCcEecCEEEEEeCCCCCCCCCCCC
Confidence            456678888763 2    12789999999998 9999999999999998864221 111   23332223444445552 


Q ss_pred             ---CCccceEEEEEEEEE
Q 021805          230 ---AGGCDEEISLFLYRG  244 (307)
Q Consensus       230 ---pg~~~e~i~lf~~~~  244 (307)
                         .....|.+.+|++.-
T Consensus       128 P~HitkPKE~~klylV~L  145 (188)
T PF13869_consen  128 PPHITKPKECIKLYLVQL  145 (188)
T ss_dssp             -TT-SS-SEEEEEEEEE-
T ss_pred             CcccCChhheeEEEEEec
Confidence               123467778887653

...

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=93.96  E-value=0.24  Score=42.91  Aligned_cols=91  Identities=16%  Similarity=0.194  Sum_probs=49.5

Q ss_pred             ceecCCCC--CCHHH----HHHHHHHHHhCCcccc-cceeeccccccCCCCceeecCCCccceEEEE---EEEEEechhH
Q 021805          180 AGMLDDDK--GDFVG----TAVREVEEETGIQLKL-EDMIDLTAFLYPSTGCKFFPSAGGCDEEISL---FLYRGRVDKE  249 (307)
Q Consensus       180 aG~vD~g~--Et~~~----AA~REl~EETGl~i~~-~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l---f~~~~~~~~~  249 (307)
                      ||++..++  ++..+    .+.||+.||.++.-.. .++..|+-         +..+. ..--.+|+   |..+...  .
T Consensus        97 GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGl---------INdd~-neVgkVHiG~lf~~~~k~--n  164 (203)
T COG4112          97 GGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGL---------INDDT-NEVGKVHIGALFLGRGKF--N  164 (203)
T ss_pred             ccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeee---------ecCCC-cccceEEEEEEEEeeccc--c
Confidence            67766542  23333    3789999999987431 34555542         11111 11112333   4433321  1


Q ss_pred             HHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhHHHHH
Q 021805          250 IIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAI  291 (307)
Q Consensus       250 ~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ktl~al  291 (307)
                      +.         ...+.+.++.+|+.++++.+.-.+-.+.+++
T Consensus       165 dv---------evKEkd~~~~kwik~~ele~~y~~~EtWS~~  197 (203)
T COG4112         165 DV---------EVKEKDLFEWKWIKLEELEKFYGVMETWSKI  197 (203)
T ss_pred             ce---------eeeecceeeeeeeeHHHHHHHhhhhHHHHHH
Confidence            11         1246678899999999998855455555444

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.08  E-value=0.16  Score=45.42  Aligned_cols=75  Identities=23%  Similarity=0.204  Sum_probs=52.0

Q ss_pred             CHHHHHHHHHHHHhCCccc---ccceeeccccccCCCCceeecCC--Cc--cceEEEEEEEEEechhHHHHHhccCCCcc
Q 021805          189 DFVGTAVREVEEETGIQLK---LEDMIDLTAFLYPSTGCKFFPSA--GG--CDEEISLFLYRGRVDKEIIMQLQGKETGL  261 (307)
Q Consensus       189 t~~~AA~REl~EETGl~i~---~~~L~~L~~l~~~~~~~~~~~sp--g~--~~e~i~lf~~~~~~~~~~i~~~~g~~~g~  261 (307)
                      ....||.|-|+=|+||...   ++++..++.        ..|..+  |.  -+|.-++.+....++            -.
T Consensus       104 GVr~AAqRkL~~ELGIp~e~v~pee~~~ltr--------ihYkA~sdg~wGEhEiDYiL~~~~~~~------------~n  163 (225)
T KOG0142|consen  104 GVRRAAQRKLKAELGIPLEEVPPEEFNFLTR--------IHYKAPSDGIWGEHEIDYILFLVKDVT------------LN  163 (225)
T ss_pred             HHHHHHHHHHHHhhCCCccccCHHHccccee--------eeeecCCCCCcccceeeEEEEEeccCC------------CC
Confidence            5788999999999999864   346667764        345433  32  344444444444322            24


Q ss_pred             CCCCceEEEEEEchhhHhhccC
Q 021805          262 RDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       262 ~~~~E~i~v~wvpleel~~~i~  283 (307)
                      ++++|..+++||+.+|++.+++
T Consensus       164 PnpnEv~e~ryvs~eelkel~~  185 (225)
T KOG0142|consen  164 PNPNEVSEIRYVSREELKELVA  185 (225)
T ss_pred             CChhhhhHhheecHHHHHHHHh
Confidence            5779999999999999999987

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=84.08  E-value=3.8  Score=35.87  Aligned_cols=49  Identities=27%  Similarity=0.354  Sum_probs=36.6

Q ss_pred             EEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhC
Q 021805          148 AVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETG  203 (307)
Q Consensus       148 aVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETG  203 (307)
                      +|+++- ...-..|||. |.+    .-++.+|||.+++| |+-.+...|=+-|-+|
T Consensus        74 gvlivh-eH~lPHvLLL-Qig----~tf~KLPGG~L~pG-E~e~~Gl~r~l~~~Lg  122 (221)
T KOG1689|consen   74 GVLIVH-EHNLPHVLLL-QIG----NTFFKLPGGRLRPG-EDEADGLKRLLTESLG  122 (221)
T ss_pred             eeEEEe-ecCCCeEEEE-eeC----CEEEecCCCccCCC-cchhHHHHHHHHHHhc
Confidence            344442 3333467765 543    35789999999998 9999999999999999

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]

Probab=83.27  E-value=1.6  Score=40.40  Aligned_cols=127  Identities=18%  Similarity=0.206  Sum_probs=74.0

Q ss_pred             EEEEEeeecCCCC-e--EE-EccceecCCCCCCHHHHHHHHHHHHhCCccc-ccceeeccccccCCCCceeecCCCccce
Q 021805          161 AILTEQVRVPTGR-V--IL-ELPAGMLDDDKGDFVGTAVREVEEETGIQLK-LEDMIDLTAFLYPSTGCKFFPSAGGCDE  235 (307)
Q Consensus       161 VLLvrQ~R~p~g~-~--~w-ElPaG~vD~g~Et~~~AA~REl~EETGl~i~-~~~L~~L~~l~~~~~~~~~~~spg~~~e  235 (307)
                      +-+=.+.|.+... |  .| .+.||.+--| -...++|++|..||.++... ..+++..+.+..    -.+-...|...+
T Consensus       148 l~iWvprRS~TKqTWP~~lDN~vaGGl~~g-~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy----~~~esr~~~~pe  222 (306)
T KOG4313|consen  148 LCIWVPRRSNTKQTWPGKLDNMVAGGLSVG-FGIKETAIKEAAEEANLPSDLVKNLVSAGCVSY----YKFESRQGLFPE  222 (306)
T ss_pred             eEEEecccCCccccCcchhhhhhccccccC-chHHHHHHHHHHHhcCCchhhHhcceecceeEE----EeeehhhccCcc
Confidence            3333355555432 1  23 4568888776 78999999999999999873 346666655311    001122333344


Q ss_pred             EEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC--ChhHHHHHHHHHHHHhcCC
Q 021805          236 EISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP--DAKVLTAIALYEMASKEEL  302 (307)
Q Consensus       236 ~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~--D~ktl~al~L~~~~~~~g~  302 (307)
                      .-++|  ....+.+-+       + ...++|......+++.|..+.++  |-|.-.|+-+...+.++|.
T Consensus       223 ~qYVf--DL~l~~d~i-------P-~~nDGEV~~F~Lltl~~~v~~l~~k~FKpncAlV~iDflirHg~  281 (306)
T KOG4313|consen  223 TQYVF--DLELPLDFI-------P-QNNDGEVQAFELLTLKDCVERLFTKDFKPNCALVVIDFLIRHGT  281 (306)
T ss_pred             ceEEE--eccCchhhc-------C-CCCCCceeeEeeecHHHHHHHHHhhccCCCcceEEEEEeeccee
Confidence            44445  333343322       1 23688999999999999877765  5555445444444444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	307
2yvm_A	182	Crystal Structure Of Ndx2 In Complex With Mg2+ From		2e-05

>pdb|2YVM|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ From Thermus Thermophilus Hb8 Length = 182

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 15/117 (12%)
Query: 101 MLLKQVLIQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETY 160
           +LL+++L + V +  +R+             TG+++   V+  GP  A  +L  +E  T 
Sbjct: 7   ILLEEILSEPVRLVKERV----------RTHTGREL-TYVYRPGPVAASFVLPVTERGT- 54
Query: 161 AILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAF 217
           A+L  Q R PTG+ +LE+PAG +D+ +      A RE+ EE G +   E +I L +F
Sbjct: 55  ALLVRQYRHPTGKFLLEVPAGKVDEGETP-EAAARRELREEVGAE--AETLIPLPSF 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	307
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	2e-23
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	7e-23
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	2e-20
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	3e-19
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	4e-19
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	8e-19
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	2e-18
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	6e-18
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	2e-17
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	2e-06
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	4e-06
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	7e-06
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	4e-05
3grn_A	153	MUTT related protein; structural genomics, hydrola	6e-05
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	1e-04
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	1e-04
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	3e-04
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	5e-04
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	6e-04

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A Length = 209

 Score = 94.7 bits (236), Expect = 2e-23
 Identities = 42/165 (25%), Positives = 65/165 (39%), Gaps = 32/165 (19%)

Query: 140 VFARGPAVAVLILLDSEGETYAILTEQVRVPTGRV-----ILELPAGMLDDDKGDFVGTA 194
           +F RG A  +L       E   +L EQ+R+          +LE+ AGM+++ +      A
Sbjct: 53  IFERGHAAVLLPFDPVRDE--VVLIEQIRIAAYDTSETPWLLEMVAGMIEEGE-SVEDVA 109

Query: 195 VREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQL 254
            RE  EE G  L ++    +           F  S GG  E  S+ +  G VD      +
Sbjct: 110 RREAIEEAG--LIVKRTKPV---------LSFLASPGGTSERSSIMV--GEVDATTASGI 156

Query: 255 QGKETGLRDHGELIKVRVVPYRELWR-----TTPDAKVLTAIALY 294
            G      D  E I+V VV   + ++        +A   + IAL 
Sbjct: 157 HGLA----DENEDIRVHVVSREQAYQWVEEGKIDNAA--SVIALQ 195

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} PDB: 3o52_A* 1viu_A 3o69_A 3o61_A Length = 191

 Score = 92.7 bits (231), Expect = 7e-23
 Identities = 36/166 (21%), Positives = 58/166 (34%), Gaps = 35/166 (21%)

Query: 140 VFARGPAVAVLILLDSEGETYAILTEQVRVPT------GRVILELPAGMLDDDKGDFVGT 193
           V+ RG    +L+    +     +L  Q RV T         ++E  AG+LD    +    
Sbjct: 41  VYDRGNGATILLYNTKKKT--VVLIRQFRVATWVNGNESGQLIESCAGLLD--NDEPEVC 96

Query: 194 AVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQ 253
             +E  EETG   ++ ++  L          + + S GG  E I  F+            
Sbjct: 97  IRKEAIEETG--YEVGEVRKL---------FELYMSPGGVTELIHFFI--AEYSDN---- 139

Query: 254 LQGKETGLRDHGELIKVRVVPYRELWR-----TTPDAKVLTAIALY 294
            Q    G     E I+V  +P+ +           D K  T + L 
Sbjct: 140 -QRANAGGGVEDEAIEVLELPFSQALEMIKTGEIRDGK--TVLLLN 182

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145

 Score = 84.5 bits (210), Expect = 2e-20
 Identities = 36/160 (22%), Positives = 55/160 (34%), Gaps = 31/160 (19%)

Query: 143 RGP-AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEE 201
           RGP AV +L +   +GE   +L  Q R P    I E+ AG ++  + D    A RE+ EE
Sbjct: 3   RGPRAVFILPVTA-QGEA--VLIRQFRYPLRATITEIVAGGVEKGE-DLGAAAARELLEE 58

Query: 202 TGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGL 261
            G      + + L           F+P            L  G         +      L
Sbjct: 59  VG--GAASEWVPLP---------GFYPQPSISGVVFYPLLALG---------VTLGAAQL 98

Query: 262 RDHGELIKVRVVPYRELWR-----TTPDAKVLTAIALYEM 296
            +  E I+  V+P  E++R        D      +     
Sbjct: 99  -EDTETIERVVLPLAEVYRMLEAGEIQDGPSSLTLWQARG 137

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens} Length = 218

 Score = 83.5 bits (206), Expect = 3e-19
 Identities = 36/192 (18%), Positives = 55/192 (28%), Gaps = 47/192 (24%)

Query: 120 FLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPT-------- 171
            L  +   F    G +          +V VL+   S      +L +Q R           
Sbjct: 12  DLGTENLYFQSMNGAQKSWDFMKTHDSVTVLLFNSSRRS--LVLVKQFRPAVYAGEVERR 69

Query: 172 -----------------------GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKL 208
                                    V +EL AG++D         A +E  EE G  L  
Sbjct: 70  FPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEEVACKEAWEECGYHLAP 129

Query: 209 EDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELI 268
            D+  +           ++   G      ++F     V      Q  G   GL + GELI
Sbjct: 130 SDLRRVA---------TYWSGVGLTGSRQTMFY--TEVTDA---QRSGPGGGLVEEGELI 175

Query: 269 KVRVVPYRELWR 280
           +V  +P      
Sbjct: 176 EVVHLPLEGAQA 187

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* Length = 207

 Score = 82.7 bits (205), Expect = 4e-19
 Identities = 37/173 (21%), Positives = 58/173 (33%), Gaps = 30/173 (17%)

Query: 138 GIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVRE 197
            +V   G AVA++ + D  G     +  Q R   GR + ELPAG+LD        TA RE
Sbjct: 38  EVVEHFG-AVAIVAMDD-NGNI--PMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARE 93

Query: 198 VEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQL-QG 256
           + EE G  L+      L              + G  DE + ++L  G         L + 
Sbjct: 94  LREEVG--LQASTWQVLV---------DLDTAPGFSDESVRVYLATG---------LREV 133

Query: 257 KETGLRDHGELIKVRVVPYRELWR-----TTPDAKVLTAIALYEMASKEELLP 304
                      + +   P  E  R        ++  +  +      +     P
Sbjct: 134 GRPEAHHEEADMTMGWYPIAEAARRVLRGEIVNSIAIAGVLAVHAVTTGFAQP 186

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* Length = 182

 Score = 81.1 bits (201), Expect = 8e-19
 Identities = 39/164 (23%), Positives = 60/164 (36%), Gaps = 29/164 (17%)

Query: 139 IVFARGPAVAVLIL-LDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVRE 197
            V+  GP  A  +L +   G    +L  Q R PTG+ +LE+PAG +D+ +      A RE
Sbjct: 34  YVYRPGPVAASFVLPVTERGTA--LLVRQYRHPTGKFLLEVPAGKVDEGE-TPEAAARRE 90

Query: 198 VEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGK 257
           + EE G   + E +I L           F P           FL             +  
Sbjct: 91  LREEVG--AEAETLIPLP---------SFHPQPSFTAVVFHPFLALK---------ARVV 130

Query: 258 ETGLRDHGELIKVRVVPYRELWR-----TTPDAKVLTAIALYEM 296
                + GEL++   +P  E++         DA     +   E 
Sbjct: 131 TPPTLEEGELLESLELPLTEVYALLAKGEIQDASTALTLFYAEP 174

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* Length = 212

 Score = 81.0 bits (200), Expect = 2e-18
 Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 22/155 (14%)

Query: 146 AVAVL-ILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGI 204
            VAV+ +L  +      +L +Q R P G   +E PAG++DD +      A+RE+EEETG 
Sbjct: 63  GVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGE-TPEAAALRELEEETG- 120

Query: 205 QLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDH 264
             K +                     G  +  I +       D     + + K       
Sbjct: 121 -YKGDIAECSP---------AVCMDPGLSNCTIHIVTVTINGDDAENARPKPKP----GD 166

Query: 265 GELIKVRVVPYRELWR-----TTPDAKVLTAIALY 294
           GE ++V  +P  +L +        +   + A    
Sbjct: 167 GEFVEVISLPKNDLLQRLDALVAEEHLTVDARVYS 201

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Length = 198

 Score = 79.2 bits (196), Expect = 6e-18
 Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 31/163 (19%)

Query: 139 IVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREV 198
           +      AV ++ ++D       IL  +  V T    L    G++D  +      A RE+
Sbjct: 44  MRPTNREAVMIVPIVDDH----LILIREYAVGTESYELGFSKGLIDPGE-SVYEAANREL 98

Query: 199 EEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKE 258
           +EE G      D+  L          K   +      ++++ + +          L  + 
Sbjct: 99  KEEVG--FGANDLTFLK---------KLSMAPSYFSSKMNIVVAQD---------LYPES 138

Query: 259 TGLRDHGELIKVRVVPYRELWR-----TTPDAKVLTAIALYEM 296
               D  E +     P   +          +A+ ++A+ L   
Sbjct: 139 LEG-DEPEPLPQVRWPLAHMMDLLEDPDFNEARNVSALFLVRE 180

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170

 Score = 77.3 bits (191), Expect = 2e-17
 Identities = 39/158 (24%), Positives = 60/158 (37%), Gaps = 32/158 (20%)

Query: 145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGI 204
           PAVAV+ L +       +   Q+R   G   LE+PAG+++  + D +  A RE+ E+TG+
Sbjct: 35  PAVAVIALREGR----MLFVRQMRPAVGLAPLEIPAGLIEPGE-DPLEAARRELAEQTGL 89

Query: 205 QLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDH 264
              L  +              +F S G  DE+  +FL            L+  E    D 
Sbjct: 90  SGDLTYLFS------------YFVSPGFTDEKTHVFLAEN---------LKEVEAHP-DE 127

Query: 265 GELIKVRVVPYRELWR-----TTPDAKVLTAIALYEMA 297
            E I+V  +   E            +       LY  A
Sbjct: 128 DEAIEVVWMRPEEALERHQRGEVEFSATGLVGVLYYHA 165

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 23/134 (17%)

Query: 145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGI 204
           P V V  +++ + +    L  +       + L  PAG L+  +   +    REV EETG 
Sbjct: 7   PNVTVAAVIEQDDK---YLLVEEIPRGTAIKLNQPAGHLEPGE-SIIQACSREVLEETGH 62

Query: 205 QLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDH 264
               E +  +  +   S G  +             F + G+V           +   +  
Sbjct: 63  SFLPEVLTGIYHWTCASNGTTYL-----------RFTFSGQV--------VSFDPDRKLD 103

Query: 265 GELIKVRVVPYREL 278
             +++       E+
Sbjct: 104 TGIVRAAWFSIDEI 117

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 27/152 (17%)

Query: 145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGI 204
           P V V  ++ +EG+    L  +     G+ +   PAG L+ D+   V  A RE+ EETGI
Sbjct: 4   PHVTVACVVHAEGK---FLVVE-ETINGKALWNQPAGHLEADE-TLVEAAARELWEETGI 58

Query: 205 QLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDH 264
             + +  I +  ++ P                   FL+   +++    Q           
Sbjct: 59  SAQPQHFIRMHQWIAPDKTPFLR------------FLFAIELEQICPTQPHDS------- 99

Query: 265 GELIKVRVVPYRELWRTTPDAK--VLTAIALY 294
            ++   R V   E+ + +      V  +I  Y
Sbjct: 100 -DIDCCRWVSAEEILQASNLRSPLVAESIRCY 130

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 46.0 bits (108), Expect = 7e-06
 Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 4/106 (3%)

Query: 178 LPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEI 237
            P G L+ ++      AVRE+ EETG  +KL   +    +     G K   S     +  
Sbjct: 53  WPKGKLEQNE-THRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADTK 111

Query: 238 SLFLYRGRVDKEIIMQLQGKETG---LRDHGELIKVRVVPYRELWR 280
               +  +       +      G     D GE+  +  V  RE  +
Sbjct: 112 HTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARK 157

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 19/138 (13%), Positives = 40/138 (28%), Gaps = 22/138 (15%)

Query: 130 KETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGD 189
              G++   + +    A  +++          ++   V+ P G     LP G ++  +  
Sbjct: 4   PTFGKREETLTYQTRYAAYIIVSKPENNT---MV--LVQAPNGA--YFLPGGEIEGTE-T 55

Query: 190 FVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKE 249
                 REV EE GI +++   +             F+ +          + Y       
Sbjct: 56  KEEAIHREVLEELGISVEIGCYLGEADEY-------FYSNHRQTAYYNPGYFYVANT--- 105

Query: 250 IIMQLQGKETGLRDHGEL 267
                +     L     L
Sbjct: 106 ----WRQLSEPLERTNTL 119

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 21/125 (16%), Positives = 39/125 (31%), Gaps = 30/125 (24%)

Query: 147 VAVLILLDSEGETYAILTEQVRVPTGRVIL---ELPAGMLDDDKG-DFVGTAVREVEEET 202
               ++ + +GE    L  + R    R      +LP G ++            REV EET
Sbjct: 10  SVYALIRNEKGE---FLLLR-RSENSRTNAGKWDLPGGKVN--PDESLKEGVAREVWEET 63

Query: 203 GIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLR 262
           GI +   D+     F                ++++   ++ G         +        
Sbjct: 64  GITMVPGDIAGQVNFELT-------------EKKVIAIVFDGGY-------VVADVKLSY 103

Query: 263 DHGEL 267
           +H E 
Sbjct: 104 EHIEY 108

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKG-DFVGTAVREVEEETGIQ 205
           V + + L  + E   +L  Q      R    LPAG ++   G   V    REV+EE G+ 
Sbjct: 22  VVLAVFLSEQDE---VLLIQEAKRECRGSWYLPAGRME--PGETIVEALQREVKEEAGLH 76

Query: 206 LKLEDMIDL 214
            + E ++ +
Sbjct: 77  CEPETLLSV 85

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGI 204
           P V     +  +G    IL  + +         LP G +D  +        RE+EEE GI
Sbjct: 28  PRVGCGAAIVRDGR---ILLIKRKRAPEAGCWGLPGGKVDWLE-PVERAVCREIEEELGI 83

Query: 205 QLKLEDMIDLTAFLYPSTG 223
            L+   ++ +   +  + G
Sbjct: 84  ALERATLLCVVDHIDAANG 102

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 49/352 (13%), Positives = 87/352 (24%), Gaps = 141/352 (40%)

Query: 13  TVSPSPPLLHFNYRSSRTRLVCSKMPTESSPSPLT-HSITIPSQLSQPVHVVAAPGLSES 71
           T    P ++   Y   R RL        +       ++++      QP   +        
Sbjct: 100 TEQRQPSMMTRMYIEQRDRL-------YNDNQVFAKYNVSRL----QPYLKL-------- 140

Query: 72  DFRCAVESTLFKQWLKNLQSETGILANGDML--LKQVLIQGV-------DMFGKRIGFLK 122
                      +Q L  L+    +L +G +L   K  +   V            +I +L 
Sbjct: 141 -----------RQALLELRPAKNVLIDG-VLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 123 FKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILEL---- 178
            K    C       P  V        +L  +D    + +  +  +++    +  EL    
Sbjct: 189 LKN---CNS-----PETVLE--MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 179 -----PAGM--LDD---------------------DKG--DFVGTAVREV---------- 198
                   +  L +                      K   DF+  A              
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 199 -EEET-GIQLKLEDMI--DLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQL 254
             +E   + LK  D    DL     P       P        +S+               
Sbjct: 299 TPDEVKSLLLKYLDCRPQDL-----PREVLTTNPRR------LSII-------------- 333

Query: 255 QGKETGLRDHGELIKVRVVPYR-ELWRTTPDAKVLTAIALYEMASKEELLPS 305
                      E I+        + W+     K+ T I     +S   L P+
Sbjct: 334 ----------AESIRDG--LATWDNWKHVNCDKLTTIIE----SSLNVLEPA 369

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 22/68 (32%)

Query: 148 AVLILLDSEGETYAILTE----------QVRVPTGRVILELPAGMLDDDKGD-FVGTAVR 196
           AVL+ L  E +   +LT           Q+  P G +           D G+     A+R
Sbjct: 37  AVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSL-----------DAGETPTQAALR 85

Query: 197 EVEEETGI 204
           E +EE  +
Sbjct: 86  EAQEEVAL 93

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 177 ELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 225
             P G  +  +      AVREV EETG++ ++   +  T ++ P    +
Sbjct: 27  VFPKGHPEPGE-SLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVER 74

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQ 205
            VA  +  +S  +   IL  Q R    + + + P G+ + ++ D   TAVREV EETGI+
Sbjct: 28  GVAGAVFDESTRK---ILVVQDRNK-LKNMWKFPGGLSEPEE-DIGDTAVREVFEETGIK 82

Query: 206 LKLEDMIDLT 215
            +   ++ + 
Sbjct: 83  SEFRSVLSIR 92

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	307
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.95
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.93
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.93
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.93
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.92
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.91
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.9
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.88
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.86
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.72
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.71
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.71
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.7
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.69
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.69
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.69
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.69
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.69
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.68
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.68
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.67
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.67
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.66
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.65
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.64
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.64
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.64
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.63
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.62
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.62
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.62
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.61
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.61
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.61
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.61
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.61
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.6
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.6
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.6
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.6
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.6
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.6
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.6
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.6
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.59
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.59
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.59
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.59
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.58
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.58
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.58
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.56
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.56
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.55
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.54
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.53
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.53
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.52
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.51
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.5
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.5
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.47
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.47
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.47
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.47
3f13_A	163	Putative nudix hydrolase family member; structural	99.46
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.44
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.35
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.33
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.25
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.2
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.18
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.13
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.08
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	98.83
3bho_A	208	Cleavage and polyadenylation specificity factor su	98.67
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	98.61

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.95  E-value=1.6e-26  Score=205.34  Aligned_cols=166  Identities=27%  Similarity=0.396  Sum_probs=126.5

Q ss_pred             EeeEeeecccccEEEEEEEEEE--cCCC---cEEeEEEEEeCCEEEEEEEEecCCceEEEEEEeeecCCC-----CeEEE
Q 021805          108 IQGVDMFGKRIGFLKFKADIFC--KETG---QKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTG-----RVILE  177 (307)
Q Consensus       108 i~~~~~fg~r~~~i~~~~d~~~--~~~G---~~~~~~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g-----~~~wE  177 (307)
                      +++..+|.   ||+++..+.+.  .++|   +...+.++.++++|+|+++.  +++++|||++|+|.+.+     .+.|+
T Consensus        19 ~~~~~v~~---g~~~v~~~~~~~~~~~g~~~~~~~r~~~~~~~av~vl~~~--~~~~~vLLvrq~R~~~~~~~~~~~~we   93 (209)
T 1g0s_A           19 IARETLYR---GFFSLDLYRFRHRLFNGQMSHEVRREIFERGHAAVLLPFD--PVRDEVVLIEQIRIAAYDTSETPWLLE   93 (209)
T ss_dssp             EEEEEEEE---SSSEEEEEEEEEBCTTSCBCCCEEEEEEECCCEEEEEEEE--TTTTEEEEEEEECGGGGGGSSCSEEEE
T ss_pred             EEEEEEEe---eeEEEEEEEEEEEcCCCCcceEEEEEEEeCCCEEEEEEEE--CCCCEEEEEEeecccCCCCCCCCeEEE
Confidence            34455554   38888888765  5777   46788899999999999873  22247999999999875     57999


Q ss_pred             ccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccC
Q 021805          178 LPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGK  257 (307)
Q Consensus       178 lPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~  257 (307)
                      +|||++|+| |++.+||+||++||||+++.  .+..++.         +|++||.+++.+++|++.......     .+ 
T Consensus        94 lPgG~ve~g-E~~~~aA~REl~EEtGl~~~--~~~~l~~---------~~~~~g~~~~~~~~f~a~~~~~~~-----~~-  155 (209)
T 1g0s_A           94 MVAGMIEEG-ESVEDVARREAIEEAGLIVK--RTKPVLS---------FLASPGGTSERSSIMVGEVDATTA-----SG-  155 (209)
T ss_dssp             CEEEECCTT-CCHHHHHHHHHHHHHCCCCC--CEEEEEE---------EESCTTTBCCEEEEEEEECCGGGC-----C--
T ss_pred             eCcccCCCC-cCHHHHHHHHHHHHcCcccC--cEEEeEE---------EecCCCccCcEEEEEEEEEccccc-----cC-
Confidence            999999998 99999999999999999984  6777764         789999999999999887532210     01 


Q ss_pred             CCccCCCCceEEEEEEchhhHhhccC-----ChhHHHHHHHHHH
Q 021805          258 ETGLRDHGELIKVRVVPYRELWRTTP-----DAKVLTAIALYEM  296 (307)
Q Consensus       258 ~~g~~~~~E~i~v~wvpleel~~~i~-----D~ktl~al~L~~~  296 (307)
                      ..+..+++|.+++.|+|++++.+++.     |+++++|++++..
T Consensus       156 ~~~~~~e~E~~~~~w~~~~el~~~i~~g~i~d~~t~~al~~~~~  199 (209)
T 1g0s_A          156 IHGLADENEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWLQL  199 (209)
T ss_dssp             -------CCSCEEEEEEHHHHHHHHHTTSSCBHHHHHHHHHHHH
T ss_pred             CCCCCCCCcEEEEEEEEHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            01234788999999999999998764     8889988866653

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.93  E-value=5.2e-25  Score=194.01  Aligned_cols=166  Identities=14%  Similarity=0.132  Sum_probs=130.8

Q ss_pred             EeeEeeecccccEEEEEEEEEEcCCCcEEeEEEEE--eCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCC
Q 021805          108 IQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFA--RGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDD  185 (307)
Q Consensus       108 i~~~~~fg~r~~~i~~~~d~~~~~~G~~~~~~v~~--r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~  185 (307)
                      +++..+|.  ++|+++..+.+..++|....+.+..  ++++|+|+++.  ++  +|||++|+|.+.+.+.|+||||++|+
T Consensus        13 ~~~~~~~~--~~~~~v~~~~~~~~~G~~~~~~~~~~~~~~av~vl~~~--~~--~vLLvrq~r~~~~~~~welPgG~ve~   86 (198)
T 1vhz_A           13 LNVETVAR--SRLFTVESVDLEFSNGVRRVYERMRPTNREAVMIVPIV--DD--HLILIREYAVGTESYELGFSKGLIDP   86 (198)
T ss_dssp             EEEEEEEE--CSSCEEEEEEEECTTSCEEEEEEECCCCCCEEEEEEEE--TT--EEEEEEEEETTTTEEEEECEEEECCT
T ss_pred             eeEEEEEE--CCEEEEEEEEEEcCCCCEEEEEEEEeCCCCEEEEEEEE--CC--EEEEEEcccCCCCCcEEEeCcccCCC
Confidence            44455554  6899999999999999987666654  67888888763  33  79999999998777899999999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCC
Q 021805          186 DKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHG  265 (307)
Q Consensus       186 g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~  265 (307)
                      | |++.+||+||++||||+++.  .+..++.         ++.+++.+++.+++|++......        .  ...+++
T Consensus        87 g-Es~~~aA~REl~EEtGl~~~--~~~~l~~---------~~~~~~~~~~~~~~f~a~~~~~~--------~--~~~~~~  144 (198)
T 1vhz_A           87 G-ESVYEAANRELKEEVGFGAN--DLTFLKK---------LSMAPSYFSSKMNIVVAQDLYPE--------S--LEGDEP  144 (198)
T ss_dssp             T-CCHHHHHHHHHHHHHSEEEE--EEEEEEE---------EECCTTTCCCEEEEEEEEEEEEC--------C--CCCCCS
T ss_pred             C-cCHHHHHHHHHHHHHCCCcC--ceEEEEE---------EeCCCCccCcEEEEEEEEeCCcc--------c--CCCCCC
Confidence            8 99999999999999999984  5666654         67788888889999988754321        1  123678


Q ss_pred             ceEEEEEEchhhHhhccC-----ChhHHHHHHHHH-HHHhcC
Q 021805          266 ELIKVRVVPYRELWRTTP-----DAKVLTAIALYE-MASKEE  301 (307)
Q Consensus       266 E~i~v~wvpleel~~~i~-----D~ktl~al~L~~-~~~~~g  301 (307)
                      |.+++.|++++++.+++.     |+++++|+.++. .++.++
T Consensus       145 E~~~~~w~~~~el~~~~~~~~i~~~~~~~al~~~~~~~~~~~  186 (198)
T 1vhz_A          145 EPLPQVRWPLAHMMDLLEDPDFNEARNVSALFLVREWLKGQG  186 (198)
T ss_dssp             SCCCEEEEEGGGGGGGGGCTTTCBHHHHHHHHHHHHHHHHTT
T ss_pred             ceEEEEEEEHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcccc
Confidence            899999999999999875     788999887665 334444

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.93  E-value=2.6e-25  Score=194.54  Aligned_cols=165  Identities=21%  Similarity=0.318  Sum_probs=124.1

Q ss_pred             EEeeEeeecccccEEEEEEEEEE--cCCCcE--EeEEEEEeCCEEEEEEEEecCCceEEEEEEeeecCC------CCeEE
Q 021805          107 LIQGVDMFGKRIGFLKFKADIFC--KETGQK--VPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPT------GRVIL  176 (307)
Q Consensus       107 ~i~~~~~fg~r~~~i~~~~d~~~--~~~G~~--~~~~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~------g~~~w  176 (307)
                      +|.+.....  .+|+++..+.+.  .+||..  ..+.++.++++|+|+++..  +++++||++|+|.|.      +.+.|
T Consensus         6 ~i~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~r~~~~~~~av~v~~~~~--~~~~vlLv~~~r~~~~~~~~~~~~~w   81 (191)
T 3o6z_A            6 TLIKDKILS--DNYFTLHNITYDLTRKDGEVIRHKREVYDRGNGATILLYNT--KKKTVVLIRQFRVATWVNGNESGQLI   81 (191)
T ss_dssp             EEEEEEEEE--CSSSEEEEEEEEEECTTSCEEEEEEEEEECCCEEEEEEEET--TTTEEEEEEEECHHHHTTTCTTCEEE
T ss_pred             EEeEeEEEe--cCcEEEEEEEEEEECCCCCEEEEEEEEEecCCEEEEEEEEC--CCCEEEEEEcCCccccccCCCCCeEE
Confidence            344444443  378888888774  489975  4678899999999998742  234799999999876      77899


Q ss_pred             EccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhcc
Q 021805          177 ELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQG  256 (307)
Q Consensus       177 ElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g  256 (307)
                      ++|||++| | |++.+||+||++||||+++.  .+..++.         +|++++.+++.+++|++....... .    +
T Consensus        82 ~lPgG~ve-g-E~~~~aa~REl~EEtG~~~~--~~~~l~~---------~~~~~~~~~~~~~~f~~~~~~~~~-~----~  143 (191)
T 3o6z_A           82 ESCAGLLD-N-DEPEVCIRKEAIEETGYEVG--EVRKLFE---------LYMSPGGVTELIHFFIAEYSDNQR-A----N  143 (191)
T ss_dssp             ECEEEECC-S-SCHHHHHHHHHHHHC-CCCS--CEEEEEE---------EESCTTTBCCEEEEEEEECCTTCC-------
T ss_pred             EecceEeC-C-CCHHHHHHHHHHHHhCCccC--cEEEEEE---------EEeCCCccCcEEEEEEEEEccccc-c----c
Confidence            99999999 8 99999999999999999984  5777764         788999999999999987542210 0    0


Q ss_pred             CCCccCCCCceEEEEEEchhhHhhccC-----ChhHHHHHHHHH
Q 021805          257 KETGLRDHGELIKVRVVPYRELWRTTP-----DAKVLTAIALYE  295 (307)
Q Consensus       257 ~~~g~~~~~E~i~v~wvpleel~~~i~-----D~ktl~al~L~~  295 (307)
                      . .+. .++|.+++.|+|++++.+++.     |+++++|++++.
T Consensus       144 ~-~~~-~~~E~~~~~w~~~~el~~~~~~g~i~d~~t~~al~~~~  185 (191)
T 3o6z_A          144 A-GGG-VEDEAIEVLELPFSQALEMIKTGEIRDGKTVLLLNYLQ  185 (191)
T ss_dssp             --------CCSSEEEEEEHHHHHHHHHHSSCCBHHHHHHHHHHH
T ss_pred             C-CCC-CCCcEEEEEEEEHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            0 011 267899999999999998764     899998875443

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.93  E-value=3.7e-24  Score=189.97  Aligned_cols=158  Identities=23%  Similarity=0.262  Sum_probs=122.6

Q ss_pred             EeeEeeecccccEEEEEEEEEEcCCCcEEeEEEEEe-------CCEEEEEEEEecC-CceEEEEEEeeecCCCCeEEEcc
Q 021805          108 IQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFAR-------GPAVAVLILLDSE-GETYAILTEQVRVPTGRVILELP  179 (307)
Q Consensus       108 i~~~~~fg~r~~~i~~~~d~~~~~~G~~~~~~v~~r-------~~aVaVl~il~~~-g~~~VLLvrQ~R~p~g~~~wElP  179 (307)
                      +++..+|.  ++|+++..+.+..++|....+.+..|       +++|+|++++.++ ++++|||++|+|.+.+.+.|+||
T Consensus        20 ~~~~~~~~--~~~~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~av~v~~v~~~~~~~~~vlLv~q~R~~~~~~~welP   97 (212)
T 2dsc_A           20 ISEELISE--GKWVKLEKTTYMDPTGKTRTWESVKRTTRKEQTADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFP   97 (212)
T ss_dssp             EEEEEEEE--CSSEEEEEEEEECTTSCEEEEEEEEETTCCTTSCSEEEEEEEEECTTSCCEEEEEEEEEGGGTEEEEECC
T ss_pred             eeEEEEee--CCEEEEEEEEEECCCCCEEEEEEEEeeccCCCCCCEEEEEEEEeCCCCCcEEEEEEeecCCCCCcEEECC
Confidence            33445554  68999999999999998877777665       7899999887543 23579999999998877799999


Q ss_pred             ceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCC
Q 021805          180 AGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKET  259 (307)
Q Consensus       180 aG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~  259 (307)
                      ||++|+| |++.+||+||++||||+.+.  .+..++         .++.+||.+++.+++|++........  ...  ..
T Consensus        98 gG~ve~g-Es~~~aA~REl~EEtGl~~~--~~~~l~---------~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~--~~  161 (212)
T 2dsc_A           98 AGLIDDG-ETPEAAALRELEEETGYKGD--IAECSP---------AVCMDPGLSNCTIHIVTVTINGDDAE--NAR--PK  161 (212)
T ss_dssp             EEECCTT-CCHHHHHHHHHHHHHCCCCE--EEEECC---------CEESCTTTBCCEEEEEEEEEETTSGG--GSS--CC
T ss_pred             ccccCCC-CCHHHHHHHHHHHHhCCCcc--ceEEec---------cEEcCCCccCceEEEEEEEEeCcccc--ccC--CC
Confidence            9999998 99999999999999999974  344443         26888999999999998875432110  000  01


Q ss_pred             ccCCCCceEEEEEEchhhHhhccC
Q 021805          260 GLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       260 g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      ...+++|.+++.|++++++.+++.
T Consensus       162 ~~~~~~E~~~~~w~~~~el~~~~~  185 (212)
T 2dsc_A          162 PKPGDGEFVEVISLPKNDLLQRLD  185 (212)
T ss_dssp             CCCCTTCCCEEEEEEGGGHHHHHH
T ss_pred             CCCCCCceEEEEEEEHHHHHHHHH
Confidence            234788999999999999998876

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.92  E-value=2.5e-24  Score=190.41  Aligned_cols=171  Identities=21%  Similarity=0.206  Sum_probs=123.2

Q ss_pred             EeeEeeecccccEEEEEEEEEEcCCCcEEeEEEEEeCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecC-CC
Q 021805          108 IQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLD-DD  186 (307)
Q Consensus       108 i~~~~~fg~r~~~i~~~~d~~~~~~G~~~~~~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD-~g  186 (307)
                      +++..+|.  +.|+++..+.+..++|+...+.++.++++|+|+++. ++  ++|||++|+|.+.+...|+||||++| +|
T Consensus         9 ~~~~~~~~--~~~~~~~~~~~~~p~G~~~~~~~~~~~~av~v~i~~-~~--~~vLLvrr~r~~~~~~~w~lPgG~ve~~g   83 (207)
T 1mk1_A            9 ISSETLHT--GAIFALRRDQVRMPGGGIVTREVVEHFGAVAIVAMD-DN--GNIPMVYQYRHTYGRRLWELPAGLLDVAG   83 (207)
T ss_dssp             EEEEEEEE--CSSEEEEEEEEC-----CEEEEEEEECCEEEEEECC-TT--SEEEEEEEEETTTTEEEEECCEEECCSTT
T ss_pred             EeEEEEEe--CCEEEEEEEEEECCCCCEEEEEEEeCCCEEEEEEEc-CC--CEEEEEEeecCCCCCcEEEeCCccccCCC
Confidence            34445554  679999999998899998888889999999988762 23  47999999999887789999999999 98


Q ss_pred             CCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCc
Q 021805          187 KGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGE  266 (307)
Q Consensus       187 ~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E  266 (307)
                       |++.+||+||++||||+++.  .+..++.         +|..++..++.+++|++.......        .....+++|
T Consensus        84 -Es~~~aa~REl~EEtGl~~~--~~~~l~~---------~~~~~~~~~~~~~~f~~~~~~~~~--------~~~~~~~~E  143 (207)
T 1mk1_A           84 -EPPHLTAARELREEVGLQAS--TWQVLVD---------LDTAPGFSDESVRVYLATGLREVG--------RPEAHHEEA  143 (207)
T ss_dssp             -CCHHHHHHHHHHHHHCEEEE--EEEEEEE---------ECSCTTTBCCCEEEEEEEEEEECC--------C--------
T ss_pred             -CCHHHHHHHHHHHHHCCccc--ccEEEEE---------EEcCCCccccEEEEEEEEccccCC--------CCCCCCCCc
Confidence             99999999999999999985  4555553         677888888888899886532111        000135778


Q ss_pred             eEEEEEEchhhHhhccC-----ChhHHHHHHHHHHHHhcCCC
Q 021805          267 LIKVRVVPYRELWRTTP-----DAKVLTAIALYEMASKEELL  303 (307)
Q Consensus       267 ~i~v~wvpleel~~~i~-----D~ktl~al~L~~~~~~~g~l  303 (307)
                      .+++.|++++++.+++.     |+++++++.++...++.+..
T Consensus       144 ~~~~~Wv~~~el~~~~~~~~i~~~~~~~al~~~~~~~~~~~~  185 (207)
T 1mk1_A          144 DMTMGWYPIAEAARRVLRGEIVNSIAIAGVLAVHAVTTGFAQ  185 (207)
T ss_dssp             --CEEEEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHHTTSCC
T ss_pred             eEEEEEEEHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccccC
Confidence            99999999999988764     78899988777666554443

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.91  E-value=1.4e-24  Score=194.89  Aligned_cols=142  Identities=23%  Similarity=0.306  Sum_probs=95.5

Q ss_pred             EEcCCCcEEeEEEEEeCCEEEEEEEEecCCceEEEEEEeeecCCC-------------------------------CeEE
Q 021805          128 FCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTG-------------------------------RVIL  176 (307)
Q Consensus       128 ~~~~~G~~~~~~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g-------------------------------~~~w  176 (307)
                      +..+||+...++++.++++|+|+++..  .++++||++|+|.+..                               ++.|
T Consensus        20 ~~~~~G~~~~~e~v~~~~aV~vl~~~~--~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w   97 (218)
T 3q91_A           20 FQSMNGAQKSWDFMKTHDSVTVLLFNS--SRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTV   97 (218)
T ss_dssp             ---------------CCCEEEEEEEEG--GGTEEEEEEEECHHHHHHHTC-------------------------CCEEE
T ss_pred             EECCCCCEEEEEEEEcCCeEEEEEEEC--CCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEE
Confidence            457899999999999999999998742  2347999999998754                               6799


Q ss_pred             EccceecCC-CCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhc
Q 021805          177 ELPAGMLDD-DKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQ  255 (307)
Q Consensus       177 ElPaG~vD~-g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~  255 (307)
                      +||||++|+ | |++.+||+||++||||+++....+..++.         +++++|.+++.+++|++....... +    
T Consensus        98 elPgG~ve~~g-Es~~eaA~REl~EEtGl~~~~~~l~~l~~---------~~~~~g~~~~~~~~f~a~~~~~~~-~----  162 (218)
T 3q91_A           98 ELCAGLVDQPG-LSLEEVACKEAWEECGYHLAPSDLRRVAT---------YWSGVGLTGSRQTMFYTEVTDAQR-S----  162 (218)
T ss_dssp             ECEEEECCSSS-CCHHHHHHHHHHHHHCBCCCGGGCEEEEE---------EEEC---CCEEEEEEEEEECGGGB-C----
T ss_pred             ECCcceeCCCC-CCHHHHHHHHHHHHhCCccccCceEEEEE---------EecCCCccceEEEEEEEEECCccc-c----
Confidence            999999999 8 99999999999999999986567778764         788899999999999987542210 0    


Q ss_pred             cCCCccCCCCceEEEEEEchhhHhhccCChh
Q 021805          256 GKETGLRDHGELIKVRVVPYRELWRTTPDAK  286 (307)
Q Consensus       256 g~~~g~~~~~E~i~v~wvpleel~~~i~D~k  286 (307)
                      ....+..+++|.+++.|++++++.+++.+++
T Consensus       163 ~~~~~~~d~~E~~ev~wv~l~el~~~i~~g~  193 (218)
T 3q91_A          163 GPGGGLVEEGELIEVVHLPLEGAQAFADDPD  193 (218)
T ss_dssp             C---------CCEEEEEEEGGGHHHHHHCTT
T ss_pred             cCCCCCCCCCcEEEEEEEEHHHHHHHHHcCC
Confidence            0112345788999999999999999987553

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.90  E-value=4.5e-23  Score=177.66  Aligned_cols=164  Identities=24%  Similarity=0.286  Sum_probs=124.4

Q ss_pred             EeeEeeecccccEEEEEEEEEEcCCCcE-EeEEEEEeCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCC
Q 021805          108 IQGVDMFGKRIGFLKFKADIFCKETGQK-VPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDD  186 (307)
Q Consensus       108 i~~~~~fg~r~~~i~~~~d~~~~~~G~~-~~~~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g  186 (307)
                      +++..+|.  +. +++..+.+..++|.. ..+.++.++++|+++++ +.++  ++||++|++.+.+.+.|++|||++|+|
T Consensus         7 ~~~~~~~~--~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~v~v~i~-~~~~--~vLL~~r~~~~~~~~~w~~PgG~ve~g   80 (182)
T 2yvp_A            7 ILLEEILS--EP-VRLVKERVRTHTGRELTYVYRPGPVAASFVLPV-TERG--TALLVRQYRHPTGKFLLEVPAGKVDEG   80 (182)
T ss_dssp             EEEEEEEC--SS-SCEEEEEEECTTSCEEEEEEBCSSCEEEEEEEB-CTTS--EEEEEEEEEGGGTEEEEECCEEECCTT
T ss_pred             eeeEEEEe--Cc-EEEEEEEEECCCCCEeeEEEEEecCCEEEEEEE-cCCC--EEEEEEeccCCCCCcEEEeccccCCCC
Confidence            34555565  34 678888888999998 67777778878877765 2333  699999998876677999999999998


Q ss_pred             CCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCc
Q 021805          187 KGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGE  266 (307)
Q Consensus       187 ~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E  266 (307)
                       |++.+||+||++||||+++.  .+..++.         ++..++..+..+++|++......       +.  ...+++|
T Consensus        81 -Es~~~aa~REl~EEtGl~~~--~~~~l~~---------~~~~~~~~~~~~~~f~~~~~~~~-------~~--~~~~~~E  139 (182)
T 2yvp_A           81 -ETPEAAARRELREEVGAEAE--TLIPLPS---------FHPQPSFTAVVFHPFLALKARVV-------TP--PTLEEGE  139 (182)
T ss_dssp             -CCHHHHHHHHHHHHHCEECS--CEEECCC---------BCSCTTTBCCEEEEEEECSCEEC-------SC--CCCCTTC
T ss_pred             -cCHHHHHHHHHHHHhCCCcc--cEEEEEE---------EeCCCCccccEEEEEEEeccccC-------CC--CCCCCCc
Confidence             99999999999999999985  4555653         56677777788888887532110       11  1236788


Q ss_pred             eEEEEEEchhhHhhccC-----ChhHHHHHHHHHHHH
Q 021805          267 LIKVRVVPYRELWRTTP-----DAKVLTAIALYEMAS  298 (307)
Q Consensus       267 ~i~v~wvpleel~~~i~-----D~ktl~al~L~~~~~  298 (307)
                      ..++.|++++++.+++.     |+++++|+.++..+.
T Consensus       140 ~~~~~W~~~~el~~~~~~~~~~~~~~~~al~~~~~~~  176 (182)
T 2yvp_A          140 LLESLELPLTEVYALLAKGEIQDASTALTLFYAEPHL  176 (182)
T ss_dssp             CEEEEEEEHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             eEEEEEEEHHHHHHHHHcCCcCChHHHHHHHHHHHHH
Confidence            99999999999988764     888988887766443

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.88  E-value=1.6e-22  Score=168.40  Aligned_cols=130  Identities=25%  Similarity=0.282  Sum_probs=97.7

Q ss_pred             EeCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCC
Q 021805          142 ARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPS  221 (307)
Q Consensus       142 ~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~  221 (307)
                      .++++|+|+++. .++  ++||++|+|.+.+.+.|++|||++|+| |++.+||+||++||||+++.  .+..++.     
T Consensus         3 ~~~~~v~vi~~~-~~~--~vLLv~~~r~~~~~~~w~~PgG~ve~g-Et~~~aa~REl~EEtGl~~~--~~~~l~~-----   71 (145)
T 2w4e_A            3 RGPRAVFILPVT-AQG--EAVLIRQFRYPLRATITEIVAGGVEKG-EDLGAAAARELLEEVGGAAS--EWVPLPG-----   71 (145)
T ss_dssp             CCCEEEEEEEEE-TTS--EEEEEEEEETTTTEEEEECEEEECCTT-CCHHHHHHHHHHHHHCEECS--EEEECCC-----
T ss_pred             eeCCEEEEEEEc-CCC--EEEEEEEEecCCCCCEEEeCCccCCCC-CCHHHHHHHHHHHhhCCccC--eEEEEec-----
Confidence            467788888763 344  599999999887777999999999998 99999999999999999984  4556653     


Q ss_pred             CCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC-----ChhHHHHHHHHHH
Q 021805          222 TGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP-----DAKVLTAIALYEM  296 (307)
Q Consensus       222 ~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~-----D~ktl~al~L~~~  296 (307)
                          ++++++..++.+++|++.......          ...+++|..+++|++++++.+++.     |+++++|+.++..
T Consensus        72 ----~~~~~~~~~~~~~~f~~~~~~~~~----------~~~~~~E~~~~~w~~~~el~~~~~~~~~~~~~~~~a~~~~~~  137 (145)
T 2w4e_A           72 ----FYPQPSISGVVFYPLLALGVTLGA----------AQLEDTETIERVVLPLAEVYRMLEAGEIQDGPSSLTLWQARG  137 (145)
T ss_dssp             ----BBSCTTTCCCEEEEEEEEEEEEC------------------CEEEEEEEHHHHHHHHHHTCCCBHHHHHHHHHHHH
T ss_pred             ----CcCCCCccCceEEEEEEEecccCC----------CCCCCCCeEEEEEEeHHHHHHHHHcCCcCcHHHHHHHHHHHH
Confidence                677788778888888876432111          123678899999999999988764     8889988876653

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.86  E-value=4.3e-21  Score=163.67  Aligned_cols=152  Identities=27%  Similarity=0.361  Sum_probs=109.3

Q ss_pred             eeEeeecccccEEEEEEEEEEcCCCcEEeEEEEEeCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCC
Q 021805          109 QGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKG  188 (307)
Q Consensus       109 ~~~~~fg~r~~~i~~~~d~~~~~~G~~~~~~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~E  188 (307)
                      ++..+|.  ++|+++..+         ..+.+..++++|+++++  +++  ++||++|+|.+.+...|++|||++|+| |
T Consensus        10 ~~~~~~~--~~~~~v~~~---------~~~~~~~~~~~v~vii~--~~~--~vLL~~~~r~~~~~~~w~lPgG~ve~g-E   73 (170)
T 1v8y_A           10 ERTYLYR--GRILNLALE---------GRYEIVEHKPAVAVIAL--REG--RMLFVRQMRPAVGLAPLEIPAGLIEPG-E   73 (170)
T ss_dssp             -CEEEEE--CSSEEEEEE---------TTEEEEEECCEEEEEEE--ETT--EEEEEECCBTTTTBCCBBCSEEECCTT-C
T ss_pred             eEEEEEE--CCeEEEEEE---------eeEEEEecCCeEEEEEE--ECC--EEEEEEEEeCCCCCCEEECCccccCCC-C
Confidence            4445554  578777655         23456667788888876  344  699999999876667899999999998 9


Q ss_pred             CHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceE
Q 021805          189 DFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELI  268 (307)
Q Consensus       189 t~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i  268 (307)
                      ++.+||+||++||||+ +  ..+..++.         ++..++..+..+++|++......          ....+++|..
T Consensus        74 s~~~aa~REl~EEtGl-~--~~~~~l~~---------~~~~~~~~~~~~~~f~~~~~~~~----------~~~~~~~E~~  131 (170)
T 1v8y_A           74 DPLEAARRELAEQTGL-S--GDLTYLFS---------YFVSPGFTDEKTHVFLAENLKEV----------EAHPDEDEAI  131 (170)
T ss_dssp             CHHHHHHHHHHHHHSE-E--EEEEEEEE---------EESCTTTBCCEEEEEEEEEEEEC----------C--------C
T ss_pred             CHHHHHHHHHHHHHCC-C--cCceeeEE---------EecCCCccccEEEEEEEEecccc----------CCCCCCCceE
Confidence            9999999999999999 6  35666654         56777777788888888653211          0123567889


Q ss_pred             EEEEEchhhHhhcc-----C-ChhHHHHHHHHHHHH
Q 021805          269 KVRVVPYRELWRTT-----P-DAKVLTAIALYEMAS  298 (307)
Q Consensus       269 ~v~wvpleel~~~i-----~-D~ktl~al~L~~~~~  298 (307)
                      ++.|++++++.+++     . |+++++|+.+|...+
T Consensus       132 ~~~W~~~~el~~~~~~~~~~~~~~~~~al~~~~~~~  167 (170)
T 1v8y_A          132 EVVWMRPEEALERHQRGEVEFSATGLVGVLYYHAFL  167 (170)
T ss_dssp             EEEEECHHHHHHHHHTTSCCBCHHHHHHHHHHHHHC
T ss_pred             EEEEEEHHHHHHHHHCCCEecCHHHHHHHHHHHHHh
Confidence            99999999998875     4 788999887776544

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.72  E-value=2.2e-16  Score=130.88  Aligned_cols=123  Identities=16%  Similarity=0.068  Sum_probs=81.4

Q ss_pred             eCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCC
Q 021805          143 RGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPST  222 (307)
Q Consensus       143 r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~  222 (307)
                      ++.+|.|+++...+++.+|||+++.+.    ..|++|||++|+| |++.+||+||++||||+++... ...+..+..  .
T Consensus         4 ~~~~v~vvi~~~~~~~~~vLl~~r~~~----g~w~~PgG~ve~g-E~~~~aa~REl~EEtGl~~~~~-~~~~~~~~~--~   75 (149)
T 3son_A            4 QPFQVLVIPFIKTEANYQFGVLHRTDA----DVWQFVAGGGEDE-EAISETAKRESIEELNLDVDVK-MYSLDSHAS--I   75 (149)
T ss_dssp             CCCEEEEEEEEECSSSEEEEEEEESSS----SCEECEEEECCTT-CCHHHHHHHHHHHHHTCCSCCC-EEEEEEEEE--E
T ss_pred             CceEEEEEEEEecCCCeEEEEEEEcCC----CCEeCCccccCCC-CCHHHHHHHHHHHHhCCCcccc-eEEEEeeec--c
Confidence            456777776654455568999877653    4699999999998 9999999999999999998642 111211000  0


Q ss_pred             CceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          223 GCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       223 ~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      ....|..++......++|.+.......       ..   ...+|..+++|++++++.+++.
T Consensus        76 ~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~---~~~~E~~~~~W~~~~el~~~~~  126 (149)
T 3son_A           76 PNFHFSFNKPYVVPEYCFAIDLTSCSY-------QV---TLSLEHSELRWVSYESAIQLLE  126 (149)
T ss_dssp             EGGGTCSSSCSEEEEEEEEEECTTTGG-------GC---CCCTTEEEEEEECHHHHHHHCC
T ss_pred             cceeeccCCceEeEEEEEEEEcCCCCC-------cc---cCCCceeeEEEeCHHHHHHHhc
Confidence            001233344455566777775431111       11   1247899999999999999876

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.71  E-value=2.1e-16  Score=131.32  Aligned_cols=109  Identities=24%  Similarity=0.279  Sum_probs=76.9

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      .+++.+++.+++  +|||++|.+  .+...|++|||++|+| |++.+||+||++||||+++....+....          
T Consensus         5 ~~~v~~ii~~~~--~vLl~~r~~--~~~~~w~~PgG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~~~~~----------   69 (153)
T 3shd_A            5 HVTVACVVHAEG--KFLVVEETI--NGKALWNQPAGHLEAD-ETLVEAAARELWEETGISAQPQHFIRMH----------   69 (153)
T ss_dssp             EEEEEEEEEETT--EEEEEEEEE--TTEEEEECSEEECCTT-CCHHHHHHHHHHHHHCCCCCCCEEEEEE----------
T ss_pred             ceEEEEEEEeCC--EEEEEEecC--CCCCCEECCeEEeCCC-CCHHHHHHHHHHHHHCcccccCcEEEEE----------
Confidence            344444444444  699988763  3456899999999998 9999999999999999998654333322          


Q ss_pred             eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHh
Q 021805          226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELW  279 (307)
Q Consensus       226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~  279 (307)
                      .+..++......++|.+.....          .....+++|..+++|++++++.
T Consensus        70 ~~~~~~~~~~~~~~f~~~~~~~----------~~~~~~~~E~~~~~W~~~~el~  113 (153)
T 3shd_A           70 QWIAPDKTPFLRFLFAIELEQI----------CPTQPHDSDIDCCRWVSAEEIL  113 (153)
T ss_dssp             EECCTTSCCEEEEEEEEECSSC----------CCCCCCSTTCCEEEEECHHHHH
T ss_pred             EEecCCCceEEEEEEEEEcccc----------CcCCCCcccceeeEEecHHHhh
Confidence            3556666666667777764321          0113467789999999999993

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.71  E-value=2e-16  Score=137.43  Aligned_cols=121  Identities=17%  Similarity=0.182  Sum_probs=80.9

Q ss_pred             cCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccc
Q 021805          155 SEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCD  234 (307)
Q Consensus       155 ~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~  234 (307)
                      +++  +|||++|.+.+. ...|+||||++|+| |++.+||+||++||||+++....+..            ++..++. +
T Consensus        49 ~~~--~vLL~~r~~~~~-~g~w~lPgG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~~~------------~~~~~~~-~  111 (189)
T 3cng_A           49 WEN--KVLLCKRAIAPY-RGKWTLPAGFMENN-ETLVQGAARETLEEANARVEIRELYA------------VYSLPHI-S  111 (189)
T ss_dssp             ETT--EEEEEEESSSSS-TTCEECSEEECCTT-CCHHHHHHHHHHHHHCCCEEEEEEEE------------EEEEGGG-T
T ss_pred             eCC--EEEEEEccCCCC-CCeEECceeeccCC-CCHHHHHHHHHHHHHCCccccceeEE------------EEecCCC-c
Confidence            444  699999887654 44799999999998 99999999999999999985333222            3333333 5


Q ss_pred             eEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHh-hccCChhHHHHHHHHHHHHhcCCCC
Q 021805          235 EEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELW-RTTPDAKVLTAIALYEMASKEELLP  304 (307)
Q Consensus       235 e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~-~~i~D~ktl~al~L~~~~~~~g~lp  304 (307)
                      ..+++|++....         +.   ...++|..++.|++++++. ..+.......++..|...++.|.+|
T Consensus       112 ~~~~~f~~~~~~---------~~---~~~~~E~~~~~W~~~~el~~~~l~~~~~~~~l~~~l~~~~~~~~~  170 (189)
T 3cng_A          112 QVYMLFRAKLLD---------LD---FFPGIESLEVRLFGEQEIPWNDIAFRVIHDPLKRYMEERHHGQPA  170 (189)
T ss_dssp             EEEEEEEEEECC---------SC---CCCCTTEEEEEEECTTTCCGGGBSCHHHHHHHHHHHHHHHHSSCC
T ss_pred             EEEEEEEEEeCC---------Cc---cCCCccceeEEEECHHHcCcccccChHHHHHHHHHHHhccCCCcc
Confidence            667778776531         11   1246788999999999997 3333333333444444444445444

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.70  E-value=1.5e-16  Score=131.83  Aligned_cols=112  Identities=20%  Similarity=0.184  Sum_probs=75.6

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      .+++.+++.+++  +|||++|.+.+. ...|++|||++|+| |++.+||+||++||||+++....  .++.        .
T Consensus         8 ~~~v~~ii~~~~--~vLl~~r~~~~~-~~~w~lPgG~ve~g-E~~~~aa~RE~~EEtGl~~~~~~--~~~~--------~   73 (153)
T 2b0v_A            8 NVTVAAVIEQDD--KYLLVEEIPRGT-AIKLNQPAGHLEPG-ESIIQACSREVLEETGHSFLPEV--LTGI--------Y   73 (153)
T ss_dssp             EEEEEEECEETT--EEEEEEECSSSS-CCEEECSEEECCTT-SCHHHHHHHHHHHHHSEEEEEEE--EEEE--------E
T ss_pred             CEEEEEEEeeCC--EEEEEEEcCCCC-CCeEECCCcCcCCC-CCHHHHHHHHHHHhhCcEeccce--EEEE--------E
Confidence            333443343444  699998887654 56899999999998 99999999999999999986433  3332        1


Q ss_pred             eecCCC-ccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhc
Q 021805          226 FFPSAG-GCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT  281 (307)
Q Consensus       226 ~~~spg-~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~  281 (307)
                      .|..++ .....+++|.+......         . ....++|..++.|++++++.++
T Consensus        74 ~~~~~~~~~~~~~~~f~~~~~~~~---------~-~~~~~~e~~~~~W~~~~el~~~  120 (153)
T 2b0v_A           74 HWTCASNGTTYLRFTFSGQVVSFD---------P-DRKLDTGIVRAAWFSIDEIRAK  120 (153)
T ss_dssp             EEEETTTTEEEEEEEEEEEEEEEC---------T-TSCCCTTEEEEEEEEHHHHHHT
T ss_pred             EEeCCCCCcEEEEEEEEEEeCCCC---------C-CCCCCCCeeeEEEecHHHHhhh
Confidence            233443 22334455666543210         0 0235678899999999999986

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.69  E-value=1.7e-16  Score=132.50  Aligned_cols=109  Identities=20%  Similarity=0.171  Sum_probs=76.9

Q ss_pred             eEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEE
Q 021805          159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEIS  238 (307)
Q Consensus       159 ~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~  238 (307)
                      ++|||+++.+.+ ....|++|||++|.| |++.+||+||++||||+++..  +..++.         +...+   ....+
T Consensus        32 ~~vLl~~r~~~~-~~~~w~~PgG~ve~g-E~~~~aa~REl~EEtGl~~~~--~~~~~~---------~~~~~---~~~~~   95 (156)
T 3gg6_A           32 DEVLLIQEAKRE-CRGSWYLPAGRMEPG-ETIVEALQREVKEEAGLHCEP--ETLLSV---------EERGP---SWVRF   95 (156)
T ss_dssp             SEEEEEECCCTT-STTCEECSEEECCTT-CCHHHHHHHHHHHHHCEEEEE--EEEEEE---------EESST---TEEEE
T ss_pred             CEEEEEEecCCC-CCCEEECCeeeccCC-CCHHHHHHHHHHHhhCceeEe--eeEEEE---------EcCCC---CEEEE
Confidence            479999988765 445799999999998 999999999999999999853  333332         22222   33556


Q ss_pred             EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhHHHHH
Q 021805          239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAI  291 (307)
Q Consensus       239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ktl~al  291 (307)
                      +|++.......        .....+++|..++.|++++++.+++.++....++
T Consensus        96 ~f~~~~~~~~~--------~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l  140 (156)
T 3gg6_A           96 VFLARPTGGIL--------KTSKEADAESLQAAWYPRTSLPTPLRAHDILHLV  140 (156)
T ss_dssp             EEEEEEEEECC--------CCGGGCSSSCSEEEEEETTSCCSSBSCTHHHHHH
T ss_pred             EEEEEeeCCee--------ccCCCCCcceeeeEEEcHHHCcccccchhHHHHH
Confidence            67765432110        0111256788999999999999999877754333

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.69  E-value=3.7e-16  Score=130.27  Aligned_cols=103  Identities=19%  Similarity=0.232  Sum_probs=72.3

Q ss_pred             EEEEEEeee---cCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceE
Q 021805          160 YAILTEQVR---VPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEE  236 (307)
Q Consensus       160 ~VLLvrQ~R---~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~  236 (307)
                      ++||++|.+   .+.....|++|||++|.| |++.+||+||++||||+.+..  +..++.+        .+..+.+....
T Consensus        26 ~vLl~~r~~~~~~~~~~~~w~~PgG~ve~g-E~~~~aa~RE~~EEtGl~~~~--~~~l~~~--------~~~~~~~~~~~   94 (159)
T 1sjy_A           26 DILLVQEKGIPGHPEKAGLWHIPSGAVEDG-ENPQDAAVREACEETGLRVRP--VKFLGAY--------LGRFPDGVLIL   94 (159)
T ss_dssp             CEEEEEESCC----CCCCCEECSEEECCTT-SCHHHHHHHHHHHHHSCCEEE--EEEEEEE--------EEECTTSCEEE
T ss_pred             CEEEEEecccCcCCCCCCeEECCccccCCC-CCHHHHHHHHHHHHHCcccee--eEEEEEE--------ecccCCCceEE
Confidence            599998887   333456899999999998 999999999999999999853  3444321        11122224566


Q ss_pred             EEEEEEEEechhHHHHHhccCCCccC-CCCceEEEEEEchhhHhhccC
Q 021805          237 ISLFLYRGRVDKEIIMQLQGKETGLR-DHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       237 i~lf~~~~~~~~~~i~~~~g~~~g~~-~~~E~i~v~wvpleel~~~i~  283 (307)
                      +++|.+....         +... .. +++|..++.|++++++.+++.
T Consensus        95 ~~~f~~~~~~---------~~~~-~~~~~~E~~~~~W~~~~el~~~~~  132 (159)
T 1sjy_A           95 RHVWLAEPEP---------GQTL-APAFTDEIAEASFVSREDFAQLYA  132 (159)
T ss_dssp             EEEEEEEECS---------SCCC-CCCCCSSEEEEEEECHHHHHHHHH
T ss_pred             EEEEEEEccC---------CCcc-ccCCCCceeEEEEecHHHHHHhhh
Confidence            7777776421         1100 12 567889999999999988865

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.69  E-value=6.2e-16  Score=126.68  Aligned_cols=100  Identities=23%  Similarity=0.373  Sum_probs=71.6

Q ss_pred             EEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCc---cceEE
Q 021805          161 AILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGG---CDEEI  237 (307)
Q Consensus       161 VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~---~~e~i  237 (307)
                      +||++|.+.+.+   |++|||++|+| |++.+||+||++||||+.+....  .++          .+..+..   ....+
T Consensus        27 vLl~~r~~~~~~---w~~PgG~ve~g-E~~~~aa~RE~~EEtGl~~~~~~--~~~----------~~~~~~~~~~~~~~~   90 (139)
T 2yyh_A           27 IVLIERKYPPVG---LALPGGFVEVG-ERVEEAAAREMREETGLEVRLHK--LMG----------VYSDPERDPRAHVVS   90 (139)
T ss_dssp             EEEEEECSSSCS---EECCEEECCTT-CCHHHHHHHHHHHHHCCCCEEEE--EEE----------EECCTTSCTTSCEEE
T ss_pred             EEEEEecCCCCc---EECccccCCCC-CCHHHHHHHHHHHHHCCCcccce--EEE----------EECCCCcCCCceEEE
Confidence            999888775432   99999999998 99999999999999999985332  232          2333221   34455


Q ss_pred             EEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHh--hccCChhHHH
Q 021805          238 SLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELW--RTTPDAKVLT  289 (307)
Q Consensus       238 ~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~--~~i~D~ktl~  289 (307)
                      ++|.+..  .        +.   ....+|..++.|++++++.  ++..+.+.+.
T Consensus        91 ~~f~~~~--~--------~~---~~~~~e~~~~~W~~~~el~~~~l~~~~~~~l  131 (139)
T 2yyh_A           91 VVWIGDA--Q--------GE---PKAGSDAKKVKVYRLEEIPLDKLVFDHKKII  131 (139)
T ss_dssp             EEEEEEE--E--------SC---CCCCTTEEEEEEECTTSCCGGGBCTTHHHHH
T ss_pred             EEEEEec--C--------Cc---cCCCCCcceEEEEEHHHCCHhhcCCCHHHHH
Confidence            6677654  1        11   1246788999999999999  7777765543

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.69  E-value=2.9e-16  Score=137.42  Aligned_cols=124  Identities=19%  Similarity=0.243  Sum_probs=75.7

Q ss_pred             EEeCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccC
Q 021805          141 FARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYP  220 (307)
Q Consensus       141 ~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~  220 (307)
                      ..+.-+|+++++. ++ .++|||+++ +.+. ...|++|||++|+| |++.+||+||++||||+++...++..+.     
T Consensus        23 ~~~~v~v~~~v~~-~~-~~~vLL~~r-~~~~-~g~w~lPGG~ve~g-Es~~~aA~REl~EEtGl~~~~~~l~~~~-----   92 (199)
T 3h95_A           23 MSHQVGVAGAVFD-ES-TRKILVVQD-RNKL-KNMWKFPGGLSEPE-EDIGDTAVREVFEETGIKSEFRSVLSIR-----   92 (199)
T ss_dssp             ---CCEEEEEEEE-TT-TTEEEEEEE-SSSS-TTSBBCCEEECCTT-CCHHHHHHHHHHHHHCCCEEEEEEEEEE-----
T ss_pred             CcccceEEEEEEe-CC-CCEEEEEEE-cCCC-CCCEECCccccCCC-CCHHHHHHHHHHHHhCCccccceEEEEE-----
Confidence            3444566666553 22 236877755 4443 34799999999998 9999999999999999998644443332     


Q ss_pred             CCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhH
Q 021805          221 STGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKV  287 (307)
Q Consensus       221 ~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~kt  287 (307)
                          ..+..++.......+|++.....         ......+++|..++.|++++++.++...+..
T Consensus        93 ----~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~  146 (199)
T 3h95_A           93 ----QQHTNPGAFGKSDMYIICRLKPY---------SFTINFCQEECLRCEWMDLNDLAKTENTTPI  146 (199)
T ss_dssp             ----ECC---------CEEEEEEEEES---------CCCCCCCTTTEEEEEEEEHHHHHHCSSBCHH
T ss_pred             ----eeecCCCCceeEEEEEEEEEcCC---------CcccCCCccceeeeEEEeHHHHhhhhhcChH
Confidence                13556665444444455443211         1112346789999999999999988764443

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.69  E-value=2.1e-16  Score=130.26  Aligned_cols=108  Identities=19%  Similarity=0.308  Sum_probs=71.7

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      +++++++  +++  +|||+++.     ...|+||||++|+| |++.+||+||++||||+++..  +..++..      ..
T Consensus         6 aag~vv~--~~~--~vLL~~r~-----~g~W~~PgG~ve~g-Et~~~aa~RE~~EEtGl~~~~--~~~l~~~------~~   67 (134)
T 3i7u_A            6 SAGGVLF--KDG--EVLLIKTP-----SNVWSFPKGNIEPG-EKPEETAVREVWEETGVKGEI--LDYIGEI------HY   67 (134)
T ss_dssp             EEEEEEE--ETT--EEEEEECT-----TSCEECCEEECCTT-CCHHHHHHHHHHHHHSEEEEE--EEEEEEE------EE
T ss_pred             EEEEEEE--ECC--EEEEEEeC-----CCcEECCeeEecCC-CCHHHHHHHHHHHhcCceEEE--eeeeeee------eE
Confidence            4444544  455  59888652     23699999999998 999999999999999999854  3333321      11


Q ss_pred             eecCCCcc-ceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          226 FFPSAGGC-DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       226 ~~~spg~~-~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      .|+..+.. ...+++|++....         +.   ....+|..+++|++++|+.+++.
T Consensus        68 ~~~~~~~~~~~~~~~f~~~~~~---------~~---~~~~~E~~~~~W~~~~e~~~~l~  114 (134)
T 3i7u_A           68 WYTLKGERIFKTVKYYLMKYKE---------GE---PRPSWEVKDAKFFPIKEAKKLLK  114 (134)
T ss_dssp             EEEETTEEEEEEEEEEEEEEEE---------EC---CCCCTTSSEEEEEEHHHHHHHBC
T ss_pred             EecCCCceEEEEEEEEEEEEcC---------Cc---CcCChhheEEEEEEHHHHhhhcC
Confidence            33333332 2334556665421         11   12346788999999999999876

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.68  E-value=3.9e-16  Score=131.30  Aligned_cols=114  Identities=18%  Similarity=0.193  Sum_probs=76.3

Q ss_pred             EEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCcee
Q 021805          147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKF  226 (307)
Q Consensus       147 VaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~  226 (307)
                      +++.+++.+++  +|||+++.+.+ ....|+||||++|+| |++.+||+||++||||+++....+.....        ..
T Consensus        30 ~~v~~vi~~~~--~vLL~~r~~~~-~~~~w~lPgG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~~~~~~--------~~   97 (157)
T 4dyw_A           30 VGCGAAIVRDG--RILLIKRKRAP-EAGCWGLPGGKVDWL-EPVERAVCREIEEELGIALERATLLCVVD--------HI   97 (157)
T ss_dssp             EEEEEEEEETT--EEEEEEECSSS-STTCEECCEEECCTT-CCHHHHHHHHHHHHHSCEEESCEEEEEEE--------EE
T ss_pred             eEEEEEEEECC--EEEEEEecCCC-CCCEEECCcccCCCC-CCHHHHHHHHHHHHHCcccccCcEEEEEE--------ee
Confidence            33333333444  69999988766 556899999999998 99999999999999999986443333221        12


Q ss_pred             ecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          227 FPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       227 ~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      +.. ......+.+|++.....         ... ..+++|..+++|++++++.+.+.
T Consensus        98 ~~~-~~~~~~~~~f~~~~~~~---------~~~-~~~~~E~~~~~W~~~~el~~~l~  143 (157)
T 4dyw_A           98 DAA-NGEHWVAPVYLAHAFSG---------EPR-VVEPDRHEALGWFALDDLPQPLT  143 (157)
T ss_dssp             ETT-TTEEEEEEEEEESEEES---------CCC-CSCTTTEEEEEEEETTSCCSSBC
T ss_pred             ccC-CCcEEEEEEEEEEEcCC---------Ccc-cCCCCcEeEEEEECHHHcccccC
Confidence            222 22334455666543211         111 23567899999999999998654

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.68  E-value=1.4e-15  Score=123.90  Aligned_cols=114  Identities=16%  Similarity=0.159  Sum_probs=76.5

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCccccccee--eccccccCCCC
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMI--DLTAFLYPSTG  223 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~--~L~~l~~~~~~  223 (307)
                      +|+++++..++++.+|||+++. .  +...|++|||++|+| |++.+||+||++||||+.+....+.  .++.       
T Consensus         5 ~~~~vi~~~~~~~~~vLl~~r~-~--~~~~w~~PgG~ve~g-E~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~-------   73 (138)
T 1ktg_A            5 AAGLVIYRKLAGKIEFLLLQAS-Y--PPHHWTPPKGHVDPG-EDEWQAAIRETKEEANITKEQLTIHEDCHET-------   73 (138)
T ss_dssp             EEEEEEEEEETTEEEEEEEEES-S--TTCCEESSEEECCTT-CCHHHHHHHHHHHHHCCCGGGEEEEEEEEEE-------
T ss_pred             EEEEEEEEecCCCcEEEEEEcc-C--CCCcEeCCccccCCC-CCHHHHHHHHHHHHHCCCccceEEeccccce-------
Confidence            4556655433444578887753 2  345799999999998 9999999999999999976432222  1111       


Q ss_pred             ceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          224 CKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       224 ~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                       ..|..++ ....+++|++.....           ....+++|..++.|++++++.++..
T Consensus        74 -~~~~~~~-~~~~~~~f~~~~~~~-----------~~~~~~~e~~~~~W~~~~el~~~~~  120 (138)
T 1ktg_A           74 -LFYEAKG-KPKSVKYWLAKLNNP-----------DDVQLSHEHQNWKWCELEDAIKIAD  120 (138)
T ss_dssp             -EEEEETT-EEEEEEEEEEEECSC-----------CCCCCCTTEEEEEEECHHHHHHHHC
T ss_pred             -EEEEeCC-CceEEEEEEEEecCC-----------cccCCCchhcEeEeccHHHHHHhhc
Confidence             1233332 345666777654321           0123577899999999999999876

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.67  E-value=1.3e-15  Score=127.74  Aligned_cols=107  Identities=19%  Similarity=0.135  Sum_probs=69.5

Q ss_pred             CCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccce
Q 021805          156 EGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDE  235 (307)
Q Consensus       156 ~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e  235 (307)
                      +++.++||+++.+   +...|++|||++|+| |++.+||+||++||||+++....+......      ...|. +.....
T Consensus        21 n~~~e~LL~~r~~---~~~~W~lPgG~ve~g-Et~~~aa~REl~EEtGl~~~~~~~~~~~~~------~~~~~-~~~~~~   89 (155)
T 3u53_A           21 NNAIEFLLLQASD---GIHHWTPPKGHVEPG-EDDLETALRETQEEAGIEAGQLTIIEGFKR------ELNYV-ARNKPK   89 (155)
T ss_dssp             SCSEEEEEEEESS---SSCCEECSEEECCSS-CCHHHHHHHHHHHHHCCCGGGEEEEEEEEE------EEEEE-ETTEEE
T ss_pred             CCCcEEEEEEecC---CCCCEECCeeeccCC-CCHHHHHHHHHHHHHCCccccceeeeeEee------eeecC-CCccee
Confidence            4556788886543   234699999999998 999999999999999999864332221110      01122 222233


Q ss_pred             EEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          236 EISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       236 ~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      ...+|++......       +.   ....+|..+++|++++|+.+++.
T Consensus        90 ~~~~~~~~~~~~~-------~~---~~~~~E~~~~~W~~~~ea~~~~~  127 (155)
T 3u53_A           90 TVIYWLAEVKDYD-------VE---IRLSHEHQAYRWLGLEEACQLAQ  127 (155)
T ss_dssp             EEEEEEEEESCTT-------CC---CCCCTTEEEEEEECHHHHHHHHC
T ss_pred             EEEEEEEEEeccC-------Cc---cCCCcceeEEEEeEHHHHHHHcC
Confidence            4445555443211       11   23456889999999999998876

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.67  E-value=2.4e-16  Score=145.38  Aligned_cols=116  Identities=21%  Similarity=0.227  Sum_probs=77.6

Q ss_pred             CCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCC
Q 021805          144 GPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG  223 (307)
Q Consensus       144 ~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~  223 (307)
                      .++|+++++  ++..++|||++|++.+   ..|++|||++|+| |++.+||+||++||||+++..  +..+.        
T Consensus       101 v~~v~avv~--~~~~~~vLLv~r~~~~---g~W~lPgG~ve~g-Es~~eAA~REl~EEtGl~~~~--l~~~~--------  164 (271)
T 2a6t_A          101 IPVRGAIML--DMSMQQCVLVKGWKAS---SGWGFPKGKIDKD-ESDVDCAIREVYEETGFDCSS--RINPN--------  164 (271)
T ss_dssp             CCEEEEEEB--CSSSSEEEEEEESSTT---CCCBCSEEECCTT-CCHHHHHHHHHHHHHCCCCTT--TCCTT--------
T ss_pred             CCeEEEEEE--ECCCCEEEEEEEeCCC---CeEECCcccCCCC-cCHHHHHHHHHHHHhCCCcee--eeeee--------
Confidence            345666654  3323479999987743   4699999999998 999999999999999999853  43332        


Q ss_pred             ceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCCh
Q 021805          224 CKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDA  285 (307)
Q Consensus       224 ~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~  285 (307)
                        .|.+++..++.+++|++......       +. ....+++|..+++|++++++.++..++
T Consensus       165 --~~~~~~~~~~~~~~f~~~~~~~~-------~~-~~~~~~~E~~~~~W~~~~el~~~~~~~  216 (271)
T 2a6t_A          165 --EFIDMTIRGQNVRLYIIPGISLD-------TR-FESRTRKEISKIEWHNLMDLPTFKKNK  216 (271)
T ss_dssp             --CEEEEEETTEEEEEEEECCCCTT-------CC-CC------EEEEEEEEGGGSTTCC---
T ss_pred             --eeccCCcCCceEEEEEEEEecCc-------cc-CCCCCccceeEEEEEEHHHHHHHHhcC
Confidence              45555666677888877643211       10 012356789999999999999887654

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.66  E-value=1.8e-15  Score=124.17  Aligned_cols=99  Identities=14%  Similarity=0.097  Sum_probs=68.6

Q ss_pred             EEEEEEeeecCC--CCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEE
Q 021805          160 YAILTEQVRVPT--GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEI  237 (307)
Q Consensus       160 ~VLLvrQ~R~p~--g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i  237 (307)
                      +|||+++.+.+.  ....|+||||.+|+| |++.+||+||++||||+++..  +..++.+        .+..+ .....+
T Consensus        18 ~vLL~~r~~~~~~~~~g~w~lPgG~ve~g-E~~~~aa~REl~EE~Gl~~~~--~~~~~~~--------~~~~~-~~~~~~   85 (140)
T 3gwy_A           18 KYLCVQRGQTKFSYTSFRYEFPGGKVEEG-ESLQEALQREIMEEMDYVIEV--GEKLLTV--------HHTYP-DFEITM   85 (140)
T ss_dssp             EEEEEEC---------CCEECSEEECCTT-CCHHHHHHHHHHHHHCCCEEE--EEEEEEE--------ECCCS-SCCEEE
T ss_pred             EEEEEEecCCCCCCCCCeEECCCccCCCC-CCHHHHHHHHHHHhhCcEEEe--ceEEEEE--------EEEeC-CceEEE
Confidence            699998887664  556899999999998 999999999999999999853  3334321        22222 345566


Q ss_pred             EEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          238 SLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       238 ~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      ++|.+....         +    ....+|..++.|++++++.++..
T Consensus        86 ~~f~~~~~~---------~----~~~~~E~~~~~W~~~~el~~~~~  118 (140)
T 3gwy_A           86 HAFLCHPVG---------Q----RYVLKEHIAAQWLSTREMAILDW  118 (140)
T ss_dssp             EEEEEEECC---------S----CCCCCSSCEEEEECHHHHTTSCB
T ss_pred             EEEEEEecC---------C----cccccccceeEeccHHHHhhCCC
Confidence            777775431         1    23456888999999999998765

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.65  E-value=7.8e-16  Score=133.17  Aligned_cols=118  Identities=16%  Similarity=0.115  Sum_probs=74.8

Q ss_pred             ceEEEEEEeeec------CCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCC
Q 021805          158 ETYAILTEQVRV------PTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAG  231 (307)
Q Consensus       158 ~~~VLLvrQ~R~------p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg  231 (307)
                      +++|||+++.+.      +.....|++|||++|+| |++.+||+||++||||+++.  .+..++          .+..+.
T Consensus        45 ~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~g-Es~~~aa~REl~EEtGl~~~--~~~~l~----------~~~~~~  111 (187)
T 3i9x_A           45 TLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDEN-ESAEQAAERELEEETSLTDI--PLIPFG----------VFDKPG  111 (187)
T ss_dssp             EEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTT-SCHHHHHHHHHHHHHCCCSC--CCEEEE----------EECCTT
T ss_pred             CCEEEEEEEccccccccCCCCCCEEECCceeCCCC-CCHHHHHHHHHHHHHCCCCc--ceEEEE----------EEcCCc
Confidence            468999988642      33455899999999998 99999999999999999885  344443          233332


Q ss_pred             cc---ceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhc--cCChhHHHHHHHHHHH
Q 021805          232 GC---DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT--TPDAKVLTAIALYEMA  297 (307)
Q Consensus       232 ~~---~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~--i~D~ktl~al~L~~~~  297 (307)
                      ..   .....+|++.........         ....+|..++.|++++++.++  ..+.+.+...++-.+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~E~~~~~W~~~~el~~~~l~~~~~~il~~a~~~l~  173 (187)
T 3i9x_A          112 RDPRGWIISRAFYAIVPPEALEK---------RAAGDDAAEIGLFPMTEALELPLAFDHLDMLKKAFSAIT  173 (187)
T ss_dssp             SSTTSSEEEEEEEEECCHHHHHH---------HHHSTTTTTEEEEEHHHHTTSCBSTTHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEEEEEEEcCcccCC---------cCCCCceeEEEEEeHHHcccCCCCccHHHHHHHHHHHHH
Confidence            21   223344544332221110         013456667999999999864  4466665554444433

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.64  E-value=2.1e-15  Score=123.70  Aligned_cols=101  Identities=18%  Similarity=0.143  Sum_probs=71.8

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL  239 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l  239 (307)
                      +|||+++.+.+...+.|+||||.+|.| |++.+||+||++||||+.+...++..+...        .+.. +.....+++
T Consensus        21 ~vLl~~r~~~~~~~g~w~lPgG~ve~g-E~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~--------~~~~-~~~~~~~~~   90 (144)
T 3r03_A           21 RVLLAQRPPGKSLAGLWEFPGGKLEPG-ETPEAALVRELAEELGVDTRASCLAPLAFA--------SHSY-DTFHLLMPL   90 (144)
T ss_dssp             CEEEEECCTTSSSTTCEECSEEECCTT-CCHHHHHHHHHHHHHCCBCCGGGCEEEEEE--------EEEC-SSSEEEEEE
T ss_pred             EEEEEEeCCCCCCCCcEECCCcEecCC-CCHHHHHHHHHHHHhCceeeccceEEEEee--------eccC-CCeEEEEEE
Confidence            588888765544456899999999998 999999999999999999976555555321        2222 223445566


Q ss_pred             EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          240 FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       240 f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      |.+....         +    .....|..++.|++++++.++..
T Consensus        91 ~~~~~~~---------~----~~~~~e~~~~~W~~~~el~~~~~  121 (144)
T 3r03_A           91 YACRSWR---------G----RATAREGQTLAWVRAERLREYPM  121 (144)
T ss_dssp             EEECCCB---------S----CCCCCSSCEEEEECGGGGGGSCC
T ss_pred             EEEEecC---------C----ccCCCCcceEEEEeHHHhccCCC
Confidence            6554321         1    23456778999999999998765

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.64  E-value=3.2e-15  Score=124.93  Aligned_cols=128  Identities=19%  Similarity=0.230  Sum_probs=76.2

Q ss_pred             CEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccc-cCCCC
Q 021805          145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFL-YPSTG  223 (307)
Q Consensus       145 ~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~-~~~~~  223 (307)
                      .+|+++++ ++++  +|||++|.+.+   ..|++|||++|+| |++.+||+||++||||+++.  .+....... ...+.
T Consensus        15 ~~v~~~i~-~~~~--~vLl~~r~~~~---g~w~~PgG~ve~g-E~~~~aa~RE~~EEtGl~~~--~~~~~~~~~~~~~~~   85 (165)
T 1f3y_A           15 RNVGICLM-NNDK--KIFAASRLDIP---DAWQMPQGGIDEG-EDPRNAAIRELREETGVTSA--EVIAEVPYWLTYDFP   85 (165)
T ss_dssp             CEEEEEEE-CTTS--CEEEEEETTEE---EEEECCEEECCTT-CCHHHHHHHHHHHHHCCCSE--EEEEECSSCCBCCCC
T ss_pred             eeEEEEEE-CCCC--cEEEEecCCCC---CcEECCeeccCCC-CCHHHHHHHHHHHhhCCChh--hhhcccccceeeecC
Confidence            45556554 3334  59998876433   5899999999998 99999999999999999873  333221100 00000


Q ss_pred             ce------eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCCh
Q 021805          224 CK------FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDA  285 (307)
Q Consensus       224 ~~------~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~  285 (307)
                      ..      .+.........+++|++........+. .++   ...+++|..+++|++++++.+++.+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~~---~~~~~~E~~~~~W~~~~el~~~~~~~  149 (165)
T 1f3y_A           86 PKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEIN-LLG---DGSEKPEFGEWSWVTPEQLIDLTVEF  149 (165)
T ss_dssp             HHHHHHHGGGSCSSCCSCBEEEEEEEECSCGGGCC-CCC---CSSSCCSEEEEEEECHHHHHHHBCGG
T ss_pred             ccccccccccccccccCceEEEEEEEecCCccccc-ccC---CCCCCChhheeEEecHHHHHHHhhhh
Confidence            00      000111122356677776532211110 000   01246789999999999999988653

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.63  E-value=1.1e-14  Score=121.31  Aligned_cols=99  Identities=21%  Similarity=0.159  Sum_probs=69.9

Q ss_pred             EEEEEEeeec-CCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEE
Q 021805          160 YAILTEQVRV-PTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEIS  238 (307)
Q Consensus       160 ~VLLvrQ~R~-p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~  238 (307)
                      +|||+++.+. +.....|+||||.+|+| |++.+||+||++||||+.+....+....          .+..++ ....+.
T Consensus        21 ~vLL~~r~~~~~~~~g~w~~PgG~ve~g-E~~~~aa~REl~EE~Gl~~~~~~~~~~~----------~~~~~~-~~~~~~   88 (153)
T 3grn_A           21 EFLLLRRSENSRTNAGKWDLPGGKVNPD-ESLKEGVAREVWEETGITMVPGDIAGQV----------NFELTE-KKVIAI   88 (153)
T ss_dssp             CEEEEEECTTCSSSTTCEECSEEECCTT-CCHHHHHHHHHHHHHCCCCCCCSEEEEE----------EEECSS-CEEEEE
T ss_pred             cEEEEEEcCCCCCCCCeEECceeecCCC-CCHHHHHHhhhhhhhCcEeecceEEEEE----------EEecCC-ceEEEE
Confidence            5988887764 33456899999999998 9999999999999999998644332221          122222 344555


Q ss_pred             EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805          239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT  282 (307)
Q Consensus       239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i  282 (307)
                      +|.+....         +.   ....+|..++.|++++++.++.
T Consensus        89 ~~~~~~~~---------~~---~~~~~e~~~~~W~~~~el~~~~  120 (153)
T 3grn_A           89 VFDGGYVV---------AD---VKLSYEHIEYSWVSLEKILGME  120 (153)
T ss_dssp             EEEEEECC---------CC---CCCCTTEEEEEEECHHHHTTCS
T ss_pred             EEEEEecC---------Cc---EecCCCcceEEEEEHHHhhhcc
Confidence            66654421         11   1234788899999999999886

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.62  E-value=3.2e-15  Score=125.16  Aligned_cols=102  Identities=17%  Similarity=0.216  Sum_probs=72.3

Q ss_pred             eEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEE
Q 021805          159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEIS  238 (307)
Q Consensus       159 ~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~  238 (307)
                      ++|||+++.+.+.....|+||||.+|+| |++.+||+||++||||+.+....+..++.+        .+..++ ....++
T Consensus        41 ~~vLL~~r~~~~~~~g~w~~PgG~ve~g-E~~~~aa~RE~~EEtGl~~~~~~~~~~~~~--------~~~~~~-~~~~~~  110 (158)
T 3hhj_A           41 NRVLLTQRPEGKSLAGLWEFPGGKVEQG-ETPEASLIRELEEELGVHVQADNLFPLTFA--------SHGYET-FHLLMP  110 (158)
T ss_dssp             SEEEEEECCCTTSCCCCCBCCEEECCTT-CCHHHHHHHHHHHHHCCBCCGGGCEEEEEE--------EEECSS-CEEEEE
T ss_pred             CEEEEEEeCCCCCCCCEEECCceeecCC-CCHHHHHHHHHHHHhCcEeecceEEEEEEE--------eeccCC-cEEEEE
Confidence            3699988765554556899999999998 999999999999999999976555445421        122222 244455


Q ss_pred             EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      +|.+....             +.....|..++.|++++++.++..
T Consensus       111 ~~~~~~~~-------------~~~~~~e~~~~~W~~~~el~~~~~  142 (158)
T 3hhj_A          111 LYFCSHYK-------------GVAQGREGQNLKWIFINDLDKYPM  142 (158)
T ss_dssp             EEEESCCB-------------SCCCCTTSCEEEEEEGGGGGGSCC
T ss_pred             EEEEEECC-------------CccCCccccceEEEcHHHHhhCCC
Confidence            56553211             123567788999999999988765

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.62  E-value=1.6e-15  Score=136.13  Aligned_cols=130  Identities=19%  Similarity=0.087  Sum_probs=84.3

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      +|+++++..++++.+|||+++.+.|. ...|++|||++|+| |++.+||+||++||||+++.  .+..++.+.+      
T Consensus        15 ~v~~vi~~~~~~~~~vLLv~r~~~~~-~g~w~lPGG~ve~g-Es~~~Aa~REl~EEtGl~~~--~~~~l~~~~~------   84 (226)
T 2fb1_A           15 GIDCIIFGFNEGEISLLLLKRNFEPA-MGEWSLMGGFVQKD-ESVDDAAKRVLAELTGLENV--YMEQVGAFGA------   84 (226)
T ss_dssp             EEEEEEEEEETTEEEEEEEECSSSSS-TTCEECEEEECCTT-SCHHHHHHHHHHHHHCCCSC--EEEEEEEECC------
T ss_pred             EEEEEEEEEeCCCCEEEEEECcCCCC-CCCEECCeeccCCC-CCHHHHHHHHHHHHHCCCCC--ceEEEEEeCC------
Confidence            34444443235556899998877543 34799999999998 99999999999999999984  4455543100      


Q ss_pred             eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhHHHHHHHHHHH
Q 021805          226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMA  297 (307)
Q Consensus       226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ktl~al~L~~~~  297 (307)
                      .+..++. ......|++....  .       ..  ..+.+|..++.|++++++.++..|...+.+.++..+.
T Consensus        85 ~~r~~~~-~~v~~~y~a~~~~--~-------~~--~~~~~e~~~~~W~~~~el~~l~~dh~~il~~a~~rlr  144 (226)
T 2fb1_A           85 IDRDPGE-RVVSIAYYALINI--N-------EY--DRELVQKHNAYWVNINELPALIFDHPEMVDKAREMMK  144 (226)
T ss_dssp             TTSSSSS-CEEEEEEEEECCT--T-------SS--CHHHHHHTTEEEEETTSCCCBSTTHHHHHHHHHHHHH
T ss_pred             CCcCCCc-eEEEEEEEEEecC--c-------cc--ccCCccccceEEEEHHHhhhccCCHHHHHHHHHHHHH
Confidence            1112222 2222346554321  1       00  0133567789999999999998898877766655543

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.62  E-value=1.5e-15  Score=131.86  Aligned_cols=115  Identities=21%  Similarity=0.182  Sum_probs=75.6

Q ss_pred             EEEEEEEEecCCceEEEEEEeeec-CCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCc
Q 021805          146 AVAVLILLDSEGETYAILTEQVRV-PTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGC  224 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~-p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~  224 (307)
                      +++++++ +++++.+|||++|.+. ......|++|||++|+| |++.+||+||++||||+++.  .+..++.+       
T Consensus        36 ~~~~v~i-~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~g-Es~~~aa~REl~EEtGl~~~--~~~~l~~~-------  104 (194)
T 1nqz_A           36 AAVLVAL-TREADPRVLLTVRSSELPTHKGQIAFPGGSLDAG-ETPTQAALREAQEEVALDPA--AVTLLGEL-------  104 (194)
T ss_dssp             EEEEEEE-ESSSSCBBCEEEEC------CCCEECSEEECCTT-CCHHHHHHHHHHHHHCCCGG--GCEEEEEC-------
T ss_pred             EEEEEEE-ecCCCeEEEEEEecCCCCCCCCeEECCcccCCCC-CCHHHHHHHHHHHHHCCCcc--ceEEEEEc-------
Confidence            4444444 4455336888887643 22345799999999998 99999999999999999985  34445431       


Q ss_pred             eeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhH-hhcc
Q 021805          225 KFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYREL-WRTT  282 (307)
Q Consensus       225 ~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel-~~~i  282 (307)
                        ....+..+..+++|++......+ .        ...+++|..++.|++++++ .+..
T Consensus       105 --~~~~~~~~~~~~~f~~~~~~~~~-~--------~~~~~~E~~~~~W~~~~el~~~~~  152 (194)
T 1nqz_A          105 --DDVFTPVGFHVTPVLGRIAPEAL-D--------TLRVTPEVAQIITPTLAELRAVPL  152 (194)
T ss_dssp             --CCEEETTTEEEEEEEEEECGGGG-G--------GCCCCTTEEEEECCBHHHHHHSCC
T ss_pred             --cCccCCCCeEEEEEEEEecCCcc-c--------cCCCccceeEEEEEEHHHhccCCC
Confidence              11122345677888776532110 0        1246789999999999999 6543

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.61  E-value=5.5e-15  Score=127.00  Aligned_cols=110  Identities=15%  Similarity=0.137  Sum_probs=73.0

Q ss_pred             EEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCcee
Q 021805          147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKF  226 (307)
Q Consensus       147 VaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~  226 (307)
                      +++++++.+++  +|||+++.+.+ +...|++|||++|+| |++.+||+||++||||+++.  .+..++.+        .
T Consensus        26 ~~~~~vi~~~~--~vLL~~r~~~~-~~g~W~lPgG~ve~g-Es~~~aa~REl~EEtGl~~~--~~~~l~~~--------~   91 (176)
T 3q93_A           26 LYTLVLVLQPQ--RVLLGMKKRGF-GAGRWNGFGGKVQEG-ETIEDGARRELQEESGLTVD--ALHKVGQI--------V   91 (176)
T ss_dssp             EEEEEEEECSS--EEEEEEECSST-TTTSEECEEEECCTT-SCHHHHHHHHHHHHHSCEES--CCEEEEEE--------E
T ss_pred             EEEEEEEEeCC--EEEEEEEcCCC-CCCeEECceecCCCC-CCHHHHHHHHHHHHHCCcce--eeEEEEEE--------E
Confidence            33444444444  69998876544 455799999999998 99999999999999999985  34444431        2


Q ss_pred             ecCCCc-cceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          227 FPSAGG-CDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       227 ~~spg~-~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      +..++. ....+++|.+....         +    .....|..++.|++++++.++..
T Consensus        92 ~~~~~~~~~~~~~~f~~~~~~---------~----~~~~~e~~~~~W~~~~el~~~~~  136 (176)
T 3q93_A           92 FEFVGEPELMDVHVFCTDSIQ---------G----TPVESDEMRPCWFQLDQIPFKDM  136 (176)
T ss_dssp             EEETTCSCEEEEEEEEESCEE---------S----CCCCCSSEEEEEEETTCCCGGGB
T ss_pred             EEcCCCCcEEEEEEEEEECCC---------C----CcCCCcceeeEEeeHHHcccccc
Confidence            222222 22344556553221         1    22455677889999999987654

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.61  E-value=5.2e-15  Score=120.57  Aligned_cols=103  Identities=16%  Similarity=0.113  Sum_probs=71.3

Q ss_pred             cCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccc
Q 021805          155 SEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCD  234 (307)
Q Consensus       155 ~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~  234 (307)
                      +++  +|||+++.+.+.....|+||||.+|+| |++.+||+||++||||+.+..  +..++.+        .+..++ ..
T Consensus        18 ~~~--~vLl~~r~~~~~~~g~w~lPgG~ve~g-E~~~~aa~RE~~EE~Gl~~~~--~~~~~~~--------~~~~~~-~~   83 (140)
T 2rrk_A           18 RDG--KILLAQRPAQSDQAGLWEFAGGKVEPD-ESQRQALVRELREELGIEATV--GEYVASH--------QREVSG-RI   83 (140)
T ss_dssp             ETT--EEEEEECCSSCSCCCCEECCEEECCTT-SCHHHHHHHHHHHHSCEEEEC--CEEEEEE--------EEEETT-EE
T ss_pred             cCC--EEEEEEcCCCCCCCCEEECCceecCCC-CCHHHHHHHHHHHHHCCeeec--ccEEEEE--------EEecCC-cE
Confidence            444  598888766555556899999999998 999999999999999999853  3334321        122222 23


Q ss_pred             eEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCC
Q 021805          235 EEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPD  284 (307)
Q Consensus       235 e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D  284 (307)
                      ..+++|.+....         +    ....+|..++.|++++++.++...
T Consensus        84 ~~~~~~~~~~~~---------~----~~~~~e~~~~~W~~~~el~~~~~~  120 (140)
T 2rrk_A           84 IHLHAWHVPDFH---------G----TLQAHEHQALVWCSPEEALQYPLA  120 (140)
T ss_dssp             EEEEEEEESEEE---------E----CCCCSSCSCEEEECHHHHTTSCCC
T ss_pred             EEEEEEEEEeeC---------C----CcCCCccceeEEeCHHHHhhCCCC
Confidence            455666654321         1    123456678999999999987663

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.61  E-value=6.4e-15  Score=125.87  Aligned_cols=120  Identities=23%  Similarity=0.307  Sum_probs=79.4

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCC---CeEEEc-cceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCC
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTG---RVILEL-PAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPS  221 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g---~~~wEl-PaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~  221 (307)
                      +++++++ +.++  +|||.+  |.+.+   .+.|+| |||++|+| |++.+||+||++||||+.+.  .+..++.     
T Consensus        39 ~~~v~i~-~~~~--~vLl~~--R~~~~~~~~g~w~l~pGG~ve~g-E~~~~aa~REl~EEtGl~~~--~~~~l~~-----  105 (180)
T 2fkb_A           39 ATYIVVH-DGMG--KILVQR--RTETKDFLPGMLDATAGGVVQAD-EQLLESARREAEEELGIAGV--PFAEHGQ-----  105 (180)
T ss_dssp             EEEEEEE-CSSS--CEEEEE--ECSSCSSSTTCEESSBCCBCBTT-CCHHHHHHHHHHHHHCCBSC--CCEEEEE-----
T ss_pred             EEEEEEE-CCCC--EEEEEE--CCCCCccCCCcEEeecCCCCCCC-CCHHHHHHHHHHHHHCCCcc--ceEEEEE-----
Confidence            4555543 3334  477754  33322   347999 99999998 99999999999999999874  3455543     


Q ss_pred             CCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC--ChhHHHHHHHH
Q 021805          222 TGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP--DAKVLTAIALY  294 (307)
Q Consensus       222 ~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~--D~ktl~al~L~  294 (307)
                          ++..++..+..+++|++..  .        +..  ..+++|..++.|++++++.+++.  ......++..|
T Consensus       106 ----~~~~~~~~~~~~~~f~~~~--~--------~~~--~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~  164 (180)
T 2fkb_A          106 ----FYFEDKNCRVWGALFSCVS--H--------GPF--ALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALW  164 (180)
T ss_dssp             ----EEEEETTEEEEEEEEEEEC--C--------CCC--CCCTTTEEEEEEECHHHHHTTGGGBCHHHHHHHHHH
T ss_pred             ----EEecCCCceEEEEEEEEec--C--------CCc--CCChhHhheEEEecHHHHHHHHHHhCCcHHHHHHHH
Confidence                3333344556677777652  1        111  23678899999999999999853  44444444433

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.61  E-value=7.2e-15  Score=123.84  Aligned_cols=111  Identities=16%  Similarity=0.081  Sum_probs=64.8

Q ss_pred             EEEEEEeeec-CCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEE
Q 021805          160 YAILTEQVRV-PTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEIS  238 (307)
Q Consensus       160 ~VLLvrQ~R~-p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~  238 (307)
                      +|||+++... +.....|++|||++|+| |++.+||+||++||||+++....+..+.-  ........|+........+.
T Consensus        40 ~vLL~~r~~~~~~~~g~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  116 (165)
T 3oga_A           40 CYLLCKMADNRGVFPGQWALSGGGVEPG-ERIEEALRREIREELGEQLILSDITPWTF--RDDIRIKTYADGRQEEIYMI  116 (165)
T ss_dssp             EEEEEEECC------CCEECCCEECCTT-CCHHHHHHHHHHHHHCSSCCEEEEEEEEE--EEEEEEEEC--CCEEEEEEE
T ss_pred             EEEEEEecCCCCCCCCeEECCccccCCC-CCHHHHHHHHHHHHhCCCccccceeeeee--ecceeeEecCCCCceeEEEE
Confidence            5888866432 22345799999999998 99999999999999999986544433210  00000012332222222222


Q ss_pred             EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      ++++......       +.   ....+|..++.|++++++.++..
T Consensus       117 ~~~~~~~~~~-------~~---~~~~~E~~~~~W~~~~el~~~~~  151 (165)
T 3oga_A          117 YLIFDCVSAN-------RD---ICINDEFQDYAWVKPEELALYDL  151 (165)
T ss_dssp             EEEEEEEESC-------CC---CCCCTTEEEEEEECGGGGGGSCB
T ss_pred             EEEEEeeccC-------CC---ccCCchheeeEEccHHHHhhCCC
Confidence            2222222111       11   12347889999999999998765

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.61  E-value=4.5e-15  Score=124.52  Aligned_cols=118  Identities=15%  Similarity=0.133  Sum_probs=72.2

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeecccccc-CCCCc
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLY-PSTGC  224 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~-~~~~~  224 (307)
                      +|+++++  +++  +|||+++.+    ...|++|||++|+| |++.+||+||++||||+++....+..+..-.. .....
T Consensus         8 ~v~~vi~--~~~--~vLL~~r~~----~g~w~lPgG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   78 (159)
T 3f6a_A            8 TVSVFIV--CKD--KVLLHLHKK----AKKMLPLGGHIEVN-ELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGE   78 (159)
T ss_dssp             EEEEEEE--ETT--EEEEEECSS----SCCEECEEEECCTT-CCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHTTC
T ss_pred             EEEEEEE--ECC--EEEEEEcCC----CCeEECCccCccCC-CCHHHHHHHHHHHHhCCCceeccccccccccccccccc
Confidence            4444443  344  699988764    24699999999998 99999999999999999986433322110000 00000


Q ss_pred             eeecCCC---------ccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          225 KFFPSAG---------GCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       225 ~~~~spg---------~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      ..++.|.         .......+|++....         +..  ..+++|..+++|++++++.++..
T Consensus        79 ~~~~~p~~~~~~~~~~~~~~~~~~f~~~~~~---------~~~--~~~~~E~~~~~W~~~~el~~~~~  135 (159)
T 3f6a_A           79 KLLINPIHTILGDVSPNHSHIDFVYYATTTS---------FET--SPEIGESKILKWYSKEDLKNAHN  135 (159)
T ss_dssp             EEECCCSEEEEECSSSSSCEEEEEEEEECSC---------SCC--CCCTTSCCCEEEECSSSSTTCSS
T ss_pred             ccccCccccccccCCCCceEEEEEEEEEeCC---------CCc--CCCCCcccceEEeeHHHHhhCcC
Confidence            1222222         112333556665421         111  22567888999999999998874

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.60  E-value=1.2e-15  Score=135.55  Aligned_cols=143  Identities=13%  Similarity=0.108  Sum_probs=88.7

Q ss_pred             ccEEEEEEEEEEcCCCcEEeEEEEEeCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCC-CHHHHHHH
Q 021805          118 IGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKG-DFVGTAVR  196 (307)
Q Consensus       118 ~~~i~~~~d~~~~~~G~~~~~~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~E-t~~~AA~R  196 (307)
                      +.|+.+ .+.+..++|...-+.++.+++++.++++++++  +++||+++  .   ...|+||||++|+| | ++.+||+|
T Consensus        18 ~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~vv~~i~~~~--~~vLl~~r--~---~g~w~~PGG~ve~g-E~t~~~aa~R   88 (212)
T 1u20_A           18 PRNISR-EESLQLEGYKHACHALLHAPSQAKLFDRVPIR--RVLLMMMR--F---DGRLGFPGGFVDTR-DISLEEGLKR   88 (212)
T ss_dssp             SEECCH-HHHHSCSSCEEEEEEEEEEECCCEETTTEECC--EEEEEEEE--T---TSCEECSEEEECTT-TSCHHHHHHH
T ss_pred             cccCCH-HHHhhcCCCcccceEEEeCCCceEEEEEEecC--CEEEEEEe--C---CCeEECCCcccCCC-CCCHHHHHHH
Confidence            456555 35555678877655555555544444443322  36777654  2   34799999999998 9 99999999


Q ss_pred             HHHHHhCCccccccee---eccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccC-CCccCCCCceEEEEE
Q 021805          197 EVEEETGIQLKLEDMI---DLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGK-ETGLRDHGELIKVRV  272 (307)
Q Consensus       197 El~EETGl~i~~~~L~---~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~-~~g~~~~~E~i~v~w  272 (307)
                      |++||||+.+....+.   .++.        ..+..+  ....+++|++....  ..+....+. .....+++|..++.|
T Consensus        89 El~EEtGl~~~~~~l~~~~~~~~--------~~~~~~--~~~~~~~f~~~~~~--~~~~~~e~~~~~~~~~~~Ev~~~~w  156 (212)
T 1u20_A           89 ELEEELGPALATVEVTEDDYRSS--------QVREHP--QKCVTHFYIKELKL--EEIERIEAEAVNAKDHGLEVMGLIR  156 (212)
T ss_dssp             HHHHHHCGGGGGCCCCGGGEEEE--------EEECTT--SCEEEEEEEEECCH--HHHHHHHHHHTTSTTBTTTEEEEEE
T ss_pred             HHHHHHCCCccccceeeeeEEEe--------ccccCC--CcEEEEEEEEEecC--CCcccccccccccccCCcceEEEEE
Confidence            9999999998643321   2322        122222  46677888876432  222111000 001124678899999


Q ss_pred             EchhhHhhc
Q 021805          273 VPYRELWRT  281 (307)
Q Consensus       273 vpleel~~~  281 (307)
                      +|++++.+.
T Consensus       157 vpl~el~~~  165 (212)
T 1u20_A          157 VPLYTLRDR  165 (212)
T ss_dssp             CCCSBCTTS
T ss_pred             EEHHHhhhh
Confidence            999999764

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.60  E-value=8.7e-15  Score=122.04  Aligned_cols=105  Identities=16%  Similarity=0.157  Sum_probs=70.8

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCC--C---ccc
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSA--G---GCD  234 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~sp--g---~~~  234 (307)
                      +|||+++.+.+ ....|++|||++|+| |++.+||+||++||||+.+....+..++.+      ...|+..  |   ...
T Consensus        31 ~vLl~~r~~~~-~~g~w~~PgG~ve~g-E~~~~aa~REl~EEtGl~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  102 (160)
T 1rya_A           31 EFLLGKRTNRP-AQGYWFVPGGRVQKD-ETLEAAFERLTMAELGLRLPITAGQFYGVW------QHFYDDNFSGTDFTTH  102 (160)
T ss_dssp             CEEEEEECSSS-STTSEECCEEECCTT-CCHHHHHHHHHHHHHSSCCCGGGSEEEEEE------EEEESSBTTBSSSCEE
T ss_pred             EEEEEeccCCC-CCCEEECCccccCCC-CCHHHHHHHHHHHHHCCCCCcccceEEEEE------eEEEcccccCCCcCcE
Confidence            59998887654 345799999999998 999999999999999999743344444331      1133322  1   113


Q ss_pred             eEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          235 EEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       235 e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      ..+++|.+....  ..       .  ..+++|..++.|++++++.++..
T Consensus       103 ~~~~~f~~~~~~--~~-------~--~~~~~e~~~~~W~~~~el~~~~~  140 (160)
T 1rya_A          103 YVVLGFRFRVSE--EE-------L--LLPDEQHDDYRWLTSDALLASDN  140 (160)
T ss_dssp             EEEEEEEEECCG--GG-------C--CCCSSSEEEEEEECHHHHHHCTT
T ss_pred             EEEEEEEEEcCc--cc-------c--ccCCCccceEEEecHHHHhhccc
Confidence            455566665321  11       1  13567889999999999988643

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.60  E-value=1.2e-14  Score=116.52  Aligned_cols=108  Identities=17%  Similarity=0.167  Sum_probs=73.8

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      +|+++++ ++++  ++||+++.+     ..|++|||++|+| |++.+||+||++||||+.+..  +..++.+        
T Consensus         4 ~~~~vi~-~~~~--~vLl~~r~~-----g~w~~PgG~ve~g-E~~~~aa~RE~~EE~Gl~~~~--~~~~~~~--------   64 (126)
T 1vcd_A            4 GAGGVVF-NAKR--EVLLLRDRM-----GFWVFPKGHPEPG-ESLEEAAVREVWEETGVRAEV--LLPLYPT--------   64 (126)
T ss_dssp             EEEEEEE-CTTS--CEEEEECTT-----SCEECCEECCCTT-CCHHHHHHHHHHHHHCCEEEE--EEEEEEE--------
T ss_pred             EEEEEEE-cCCC--EEEEEEECC-----CCccCCcCcCCCC-CCHHHHHHHHHHHhhCcEeee--ccEEeEE--------
Confidence            3444443 2334  588887643     3599999999998 999999999999999999853  3334321        


Q ss_pred             eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCCh
Q 021805          226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDA  285 (307)
Q Consensus       226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~  285 (307)
                      .|..++. ...+++|++....         +.   ...++|..++.|++++++.+++...
T Consensus        65 ~~~~~~~-~~~~~~~~~~~~~---------~~---~~~~~e~~~~~w~~~~el~~~~~~~  111 (126)
T 1vcd_A           65 RYVNPKG-VEREVHWFLMRGE---------GA---PRLEEGMTGAGWFSPEEARALLAFP  111 (126)
T ss_dssp             EEECTTS-CEEEEEEEEEEEE---------SC---CCCCTTCCEEEEECHHHHHHHBCSH
T ss_pred             EEecCCc-eEEEEEEEEEEcC---------CC---CCCCcceeeeEEcCHHHHHHhhcCh
Confidence            2343433 4556677665421         11   1245788899999999999887643

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.60  E-value=3.5e-15  Score=122.55  Aligned_cols=124  Identities=14%  Similarity=0.053  Sum_probs=75.9

Q ss_pred             CCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCC--
Q 021805          144 GPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPS--  221 (307)
Q Consensus       144 ~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~--  221 (307)
                      +-+|+++++. .+ .+++||+++.+.   ...|++|||++|+| |++.+||+||++||||+.+....+..++......  
T Consensus         9 ~~~v~~~i~~-~~-~~~vLl~~r~~~---~g~w~~PgG~ve~g-E~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   82 (150)
T 2o1c_A            9 PVSILVVIYA-QD-TKRVLMLQRRDD---PDFWQSVTGSVEEG-ETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFE   82 (150)
T ss_dssp             SEEEEEEEEE-TT-TCEEEEEECSSS---TTCEESEEEECCTT-CCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEEE
T ss_pred             ceEEEEEEEe-CC-CCEEEEEEecCC---CCceECCccccCCC-CCHHHHHHHHHHHHhCCCccccceeEEeeeceeeee
Confidence            3355555542 22 236888876543   24799999999998 9999999999999999998643332222100000  


Q ss_pred             -CCceeecCC-CccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCCh
Q 021805          222 -TGCKFFPSA-GGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDA  285 (307)
Q Consensus       222 -~~~~~~~sp-g~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~  285 (307)
                       .....+..+ +.....+++|.+.....         .   ....+|..++.|++++++.++....
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~---------~---~~~~~E~~~~~W~~~~el~~~~~~~  136 (150)
T 2o1c_A           83 IFSHLRHRYAPGVTRNTESWFCLALPHE---------R---QIVFTEHLAYKWLDAPAAAALTKSW  136 (150)
T ss_dssp             CCGGGGGGBCTTCCEEEEEEEEEEESSC---------C---CCCCSSSSCEEEEEHHHHHHHCSCH
T ss_pred             eecccccccCCCCcceEEEEEEEEcCCC---------C---CcChhHhhccEeecHHHHHhhhcCH
Confidence             000001122 33456667777654211         1   1133678899999999999987643

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.60  E-value=6.7e-15  Score=124.75  Aligned_cols=120  Identities=13%  Similarity=0.176  Sum_probs=79.9

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecC-CCCeEEE-ccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCC
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVP-TGRVILE-LPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG  223 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p-~g~~~wE-lPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~  223 (307)
                      +|+++++ +.++  ++||+++...+ .....|+ +|||++|+| |++.+||+||++||||+.+....+..++.+      
T Consensus        36 ~v~v~i~-~~~~--~vLl~~r~~~~~~~~g~w~~~PgG~ve~g-Es~~~aa~REl~EEtGl~~~~~~l~~~~~~------  105 (171)
T 1q27_A           36 VVNAFLR-NSQG--QLWIPRRSPSKSLFPNALDVSVGGAVQSG-ETYEEAFRREAREELNVEIDALSWRPLASF------  105 (171)
T ss_dssp             EEEEEEE-ETTT--EEEECCSCCSSSCCCCSCCCSEEEECSSS-SCHHHHHHHHHHHHHSCTTSSSCEEEEEEE------
T ss_pred             EEEEEEE-CCCC--eEEEEEecCCCCCCCCccccccCccccCC-CCHHHHHHHHHHHHHCCcccccceEEEEEE------
Confidence            3455543 3344  68887643222 1245798 999999998 999999999999999999976556666542      


Q ss_pred             cee-ecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC-----ChhHHHHH
Q 021805          224 CKF-FPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP-----DAKVLTAI  291 (307)
Q Consensus       224 ~~~-~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~-----D~ktl~al  291 (307)
                        . |..++  ...+++|.+..  .        +..  ..+++|..+++|++++++.+++.     +.+++.++
T Consensus       106 --~~~~~~~--~~~~~~f~~~~--~--------~~~--~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~l  163 (171)
T 1q27_A          106 --SPFQTTL--SSFMCVYELRS--D--------ATP--IFNPNDISGGEWLTPEHLLARIAAGEAAKGDLAELV  163 (171)
T ss_dssp             --CSSSSCC--SSEEEEEEEEC--C--------CCC--CSCTTTCSCCEEECHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             --eccCCCC--ccEEEEEEEEE--C--------Ccc--ccCchhhheEEEecHHHHHHHHhcCCCCchhHHHHH
Confidence              2 33333  23667777654  1        111  13567888899999999987643     66666544

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.60  E-value=1.8e-15  Score=124.79  Aligned_cols=112  Identities=21%  Similarity=0.325  Sum_probs=73.3

Q ss_pred             CEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCc
Q 021805          145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGC  224 (307)
Q Consensus       145 ~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~  224 (307)
                      .+++++++  +++.++|||+++.+    ...|++|||++|+| |++.+||+||++||||+++.  .+..+..        
T Consensus         5 ~~~~~~i~--~~~~~~vLl~~r~~----~g~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~~--~~~~~~~--------   67 (146)
T 2jvb_A            5 PVRGAAIF--NENLSKILLVQGTE----SDSWSFPRGKISKD-ENDIDCCIREVKEEIGFDLT--DYIDDNQ--------   67 (146)
T ss_dssp             CCEEEEEB--CTTSSEEEEECCSS----SSCCBCCEECCCSS-SCHHHHHHHHHHHHTSCCCS--SSSCSSC--------
T ss_pred             EEEEEEEE--eCCCCEEEEEEEcC----CCcEECCcccCCCC-CCHHHHHHHHHHHHHCCCch--Hhccccc--------
Confidence            34555544  33224798887543    24799999999998 99999999999999999985  3333332        


Q ss_pred             eeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          225 KFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       225 ~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                       ++.. +..+...++|++.......       . ....+++|..++.|++++++.+++.
T Consensus        68 -~~~~-~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~E~~~~~W~~~~el~~~~~  116 (146)
T 2jvb_A           68 -FIER-NIQGKNYKIFLISGVSEVF-------N-FKPQVRNEIDKIEWFDFKKISKTMY  116 (146)
T ss_dssp             -EEEE-EETTEEEEEEEECCCCSSS-------C-CCCCCSSSCCCEEEEEHHHHHTGGG
T ss_pred             -cccc-ccCCceEEEEEEEeccccc-------c-CCcCCcchhheeEEeEHHHHHhhhc
Confidence             2222 2334456666654322110       0 1112467889999999999999876

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.60  E-value=2.1e-14  Score=132.25  Aligned_cols=119  Identities=17%  Similarity=0.151  Sum_probs=84.6

Q ss_pred             ceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCcc---c
Q 021805          158 ETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGC---D  234 (307)
Q Consensus       158 ~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~---~  234 (307)
                      +.+|||+++.+.|.. ..|++|||++|+| |++.+||+||++||||+++....+..++.          |..++..   .
T Consensus        55 ~~~VLLv~R~~~p~~-g~W~lPGG~ve~g-Es~~~AA~REl~EEtGl~v~~~~l~~l~~----------~~~~~r~~~~~  122 (273)
T 2fml_A           55 QLKVLLIQRKGHPFR-NSWALPGGFVNRN-ESTEDSVLRETKEETGVVISQENIEQLHS----------FSRPDRDPRGW  122 (273)
T ss_dssp             EEEEEEEEECSSSST-TCEECCEEECCTT-SCHHHHHHHHHHHHHCCCCCGGGEEEEEE----------ECCTTSSTTSS
T ss_pred             CcEEEEEEccCCCCC-CcEECCccCCCCC-cCHHHHHHHHHHHHHCCCCCcCcEEEEEE----------EcCCCCCCCce
Confidence            568999998776543 4799999999998 99999999999999999876666776653          3333321   2


Q ss_pred             eEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHh-------------------------hccCChhHHH
Q 021805          235 EEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELW-------------------------RTTPDAKVLT  289 (307)
Q Consensus       235 e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~-------------------------~~i~D~ktl~  289 (307)
                      ...++|++....         +.   ....+|..++.|++++++.                         .+.+|+..|.
T Consensus       123 ~~~~~y~a~~~~---------~~---~~~~~E~~~~~W~~~~e~~~~~~~~~e~~~l~~~~~~~~~~~~~~LafdH~~Il  190 (273)
T 2fml_A          123 VVTVSYLAFIGE---------EP---LIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLAFDHSEII  190 (273)
T ss_dssp             EEEEEEEEECCC---------CC---CCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSSSCCSTTHHHHH
T ss_pred             EEEEEEEEEeCC---------CC---CCCCcceeeEEEEEhhHhhhhhccccchhhhccccccccccCCCcccccHHHHH
Confidence            344556654321         11   2356788999999999753                         3445888888


Q ss_pred             HHHHHHHHHhc
Q 021805          290 AIALYEMASKE  300 (307)
Q Consensus       290 al~L~~~~~~~  300 (307)
                      +-++.++..+.
T Consensus       191 ~~al~rlr~kl  201 (273)
T 2fml_A          191 IKAFNRVVDKM  201 (273)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            87776665543

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.60  E-value=3.4e-15  Score=125.96  Aligned_cols=106  Identities=18%  Similarity=0.152  Sum_probs=68.4

Q ss_pred             EecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCC-C
Q 021805          153 LDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSA-G  231 (307)
Q Consensus       153 l~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~sp-g  231 (307)
                      +.+++.++|||+++.+.+.. ..|++|||++|+| |++.+||+||++||||+.+...+  .++.+        .+..+ .
T Consensus        17 i~~~~~~~vLL~~r~~~~~~-g~w~lPgG~ve~g-Es~~~aa~REl~EEtGl~~~~~~--~~~~~--------~~~~~~~   84 (161)
T 3exq_A           17 VTDPETQRVLVEDKVNVPWK-AGHSFPGGHVEVG-EPCATAAIREVFEETGLRLSGVT--FCGTC--------EWFDDDR   84 (161)
T ss_dssp             EBCTTTCCEEEECCCCCTTT-CSBBCCCCBCCTT-SCHHHHHHHHHHHHHCCEESCCE--EEEEE--------EEECSSC
T ss_pred             EEeCCCCEEEEEEccCCCCC-CCEEccceecCCC-CCHHHHHHHHHHHhhCcEecCCc--EEEEE--------ecccCCC
Confidence            33444246999887644333 3589999999998 99999999999999999986433  33321        22221 2


Q ss_pred             ccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          232 GCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       232 ~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      .....+.+|.+....         +    .....|..++.|++++++.++..
T Consensus        85 ~~~~~~~~~~~~~~~---------~----~~~~~e~~~~~W~~~~el~~~~~  123 (161)
T 3exq_A           85 QHRKLGLLYRASNFT---------G----TLKASAEGQLSWLPITALTRENS  123 (161)
T ss_dssp             SSEEEEEEEEECCEE---------S----CCCGGGTTTEEEECGGGCCTTTB
T ss_pred             CeEEEEEEEEEeccC---------C----ccCCCccceEEEeeHHHhhhCcc
Confidence            233344455443221         1    12345566799999999988754

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.59  E-value=5.3e-15  Score=130.31  Aligned_cols=102  Identities=16%  Similarity=0.068  Sum_probs=67.5

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceE-EE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEE-IS  238 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~-i~  238 (307)
                      +|||+++..    ...|++|||++|+| |++.+||+||++||||+++....+.....       ...+..++..... ..
T Consensus        80 ~vLLv~r~~----~g~w~lPgG~ve~g-Es~~~aa~REl~EEtGl~v~~~~~l~~~~-------~~~~~~~~~~~~~~~~  147 (205)
T 3q1p_A           80 KLLFVKEKS----DGKWALPGGWADVG-YTPTEVAAKEVFEETGYEVDHFKLLAIFD-------KEKHQPSPSATHVYKI  147 (205)
T ss_dssp             EEEEEEC-------CCEECSEEECCTT-CCHHHHHHHHHHHHHSEEEEEEEEEEEEE-------HHHHSCCCCSSCEEEE
T ss_pred             EEEEEEEcC----CCcEECCcCccCCC-CCHHHHHHHHHHHHHCCccccceEEEEEe-------ccccCCCCCCceEEEE
Confidence            699988653    24799999999998 99999999999999999986433333221       0112223443333 44


Q ss_pred             EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCCh
Q 021805          239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDA  285 (307)
Q Consensus       239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~  285 (307)
                      +|.+... .        +.   .....|..++.|++++++.++..+.
T Consensus       148 ~~~~~~~-~--------~~---~~~~~E~~~~~w~~~~el~~l~~~~  182 (205)
T 3q1p_A          148 FIGCEII-G--------GE---KKTSIETEEVEFFGENELPNLSIAR  182 (205)
T ss_dssp             EEEEEEE-E--------EC---CCCCTTSCCEEEECTTSCCCBCTTT
T ss_pred             EEEEEec-C--------Cc---cCCCCcceEEEEEeHHHhhhcCCCc
Confidence            4555432 1        11   1234788899999999999887633

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.59  E-value=6e-15  Score=125.06  Aligned_cols=105  Identities=22%  Similarity=0.313  Sum_probs=67.0

Q ss_pred             cCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccc
Q 021805          155 SEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCD  234 (307)
Q Consensus       155 ~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~  234 (307)
                      +++  +|||++|.+.   ...|++|||++|+| |++.+||+||++||||+++....+..            .+..++...
T Consensus        32 ~~~--~vLL~~r~~~---~~~w~~PgG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~~~------------~~~~~~~~~   93 (171)
T 3id9_A           32 EDE--KVLLVKQKVA---NRDWSLPGGRVENG-ETLEEAMIREMREETGLEVKIKKLLY------------VCDKPDASP   93 (171)
T ss_dssp             ETT--EEEEEECSST---TCCEECCEEECCTT-CCHHHHHHHHHHHHHCCCEEEEEEEE------------EEEETTSSS
T ss_pred             ECC--EEEEEEEECC---CCeEECCCccCCCC-CCHHHHHHHHHHHHHCCccccceEEE------------EEcccCCCC
Confidence            444  6999988763   45799999999998 99999999999999999985333222            233333333


Q ss_pred             eEE-EEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          235 EEI-SLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       235 e~i-~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      ... .+|.+... ..+ +.   . .....+++|..++.|++++++.++..
T Consensus        94 ~~~~~~~~~~~~-~~~-~~---~-~~~~~~~~E~~~~~w~~~~el~~~~~  137 (171)
T 3id9_A           94 SLLHITFLLERI-EGE-IT---L-PSNEFDHNPIHDVQMVPINELSYYGF  137 (171)
T ss_dssp             CEEEEEEEEEEC-------------------CCCCCEEEEETGGGGGGTC
T ss_pred             cEEEEEEEEEEc-CCc-cc---C-CccCCCcCeeeeEEEEeHHHHhhCCC
Confidence            333 34544432 211 10   0 01123567888999999999998765

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.59  E-value=1.1e-14  Score=120.25  Aligned_cols=100  Identities=13%  Similarity=0.086  Sum_probs=70.2

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL  239 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l  239 (307)
                      +|||+++.+.+...+.|+||||++|+| |++.+||+||++||||+.+....+....          .+..++ ....+++
T Consensus        34 ~vLl~~r~~~~~~~g~w~~PgG~ve~g-E~~~~aa~RE~~EE~Gl~~~~~~~~~~~----------~~~~~~-~~~~~~~  101 (153)
T 3ees_A           34 KILVGQRPENNSLAGQWEFPGGKIENG-ETPEEALARELNEELGIEAEVGELKLAC----------THSYGD-VGILILF  101 (153)
T ss_dssp             EEEEEECCTTSTTTTCEECSEEECCTT-CCHHHHHHHHHHHHHSCEEECCCEEEEE----------EEEETT-EEEEEEE
T ss_pred             EEEEEEeCCCCCCCCeEECCceeeCCC-CCHHHHHHHHHHHHHCCccccCceEEEE----------EEecCC-CeEEEEE
Confidence            699988776545556899999999998 9999999999999999998643332221          122222 2334555


Q ss_pred             EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCC
Q 021805          240 FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPD  284 (307)
Q Consensus       240 f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D  284 (307)
                      |.+....         +    ..+.+|..++.|++++++.++...
T Consensus       102 ~~~~~~~---------~----~~~~~e~~~~~W~~~~el~~~~~~  133 (153)
T 3ees_A          102 YEILYWK---------G----EPRAKHHMMLEWIHPEELKHRNIP  133 (153)
T ss_dssp             EEECEEE---------S----CCCCSSSSEEEEECGGGGGGSCCC
T ss_pred             EEEEECC---------C----CcCCCccceEEEecHHHhhhCCCC
Confidence            6554321         1    235667789999999999987653

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.58  E-value=8.4e-15  Score=129.14  Aligned_cols=102  Identities=18%  Similarity=0.234  Sum_probs=66.4

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceE-EE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEE-IS  238 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~-i~  238 (307)
                      +|||+++.     ...|+||||++|+| |++.+||+||++||||+++....+.....       ...+..++..... ..
T Consensus        82 ~vLLvrr~-----~g~w~lPgG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~  148 (206)
T 3o8s_A           82 KILLVQEN-----DGLWSLPGGWCDVD-QSVKDNVVKEVKEEAGLDVEAQRVVAILD-------KHKNNPAKSAHRVTKV  148 (206)
T ss_dssp             EEEEEECT-----TSCEECSEEECCTT-SCHHHHHHHHHHHHHCEEEEEEEEEEEEE-------HHHHCC-----CEEEE
T ss_pred             EEEEEEec-----CCeEECCeeccCCC-CCHHHHHHHHHHHHHCCcceeeeEEEEEe-------ccccCCCCCCceEEEE
Confidence            69998765     34799999999998 99999999999999999985433322211       0112334333333 34


Q ss_pred             EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChh
Q 021805          239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAK  286 (307)
Q Consensus       239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~k  286 (307)
                      +|.+... .        +.   .....|..++.|++++++.++..+..
T Consensus       149 ~~~~~~~-~--------~~---~~~~~E~~~~~w~~~~el~~l~~~~~  184 (206)
T 3o8s_A          149 FILCRLL-G--------GE---FQPNSETVASGFFSLDDLPPLYLGKN  184 (206)
T ss_dssp             EEEEEEE-E--------EC---CCCCSSCSEEEEECTTSCCCBCTTTC
T ss_pred             EEEEEec-C--------Ce---ecCCCCceEEEEEeHHHhhhccCCCc
Confidence            4555432 1        11   12337888999999999998876443

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.58  E-value=1.7e-14  Score=130.60  Aligned_cols=131  Identities=15%  Similarity=0.147  Sum_probs=84.9

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCC--CCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCC
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDD--DKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG  223 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~--g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~  223 (307)
                      +|+++++..++++.+|||+++.+.|. ...|++|||++|+  | |++.+||+||++||||+++.  .+..++.+.     
T Consensus        24 ~v~~vi~~~~~~~~~vLLv~R~~~~~-~g~W~lPGG~ve~~~g-Es~~~AA~REl~EEtGl~~~--~~~~l~~~~-----   94 (240)
T 3gz5_A           24 TVDAVLFTYHDQQLKVLLVQRSNHPF-LGLWGLPGGFIDETCD-ESLEQTVLRKLAEKTAVVPP--YIEQLCTVG-----   94 (240)
T ss_dssp             EEEEEEEEEETTEEEEEEEECCSSSS-TTCEECSEEECCTTTC-SBHHHHHHHHHHHHHSSCCS--EEEEEEEEE-----
T ss_pred             EEEEEEEEEeCCCcEEEEEECcCCCC-CCCEECCccccCCCCC-cCHHHHHHHHHHHHHCCCCC--ceeeEEEeC-----
Confidence            34444443345667899998876553 3469999999999  8 99999999999999999984  455554321     


Q ss_pred             ceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHh--hccCChhHHHHHHHHHHHH
Q 021805          224 CKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELW--RTTPDAKVLTAIALYEMAS  298 (307)
Q Consensus       224 ~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~--~~i~D~ktl~al~L~~~~~  298 (307)
                       .....++. ......|++...  .....         ...+|..++.|++++++.  .+..|.+.+.+.++..+..
T Consensus        95 -~~~r~~~~-~~~~~~y~a~~~--~~~~~---------~~~~e~~~~~W~~~~el~~~~l~~dh~~il~~a~~rlr~  158 (240)
T 3gz5_A           95 -NNSRDARG-WSVTVCYTALMS--YQACQ---------IQIASVSDVKWWPLADVLQMPLAFDHLQLIEQARERLTQ  158 (240)
T ss_dssp             -ESSSSTTS-CEEEEEEEEECC--HHHHH---------HHHTTCTTEEEEEHHHHTTSCCSTTHHHHHHHHHHHHHH
T ss_pred             -CCccCCCc-eEEEEEEEEEec--ccccC---------CCCCcccceEEecHHHcccCCcchhHHHHHHHHHHHHHH
Confidence             11223333 233344555432  22111         023456678999999997  4667888887776655444

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.58  E-value=5.3e-15  Score=121.61  Aligned_cols=116  Identities=15%  Similarity=0.067  Sum_probs=73.7

Q ss_pred             CEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCc
Q 021805          145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGC  224 (307)
Q Consensus       145 ~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~  224 (307)
                      .+|+++++  ++++++|||+++  .+   ..|++|||.+|+| |++.+||+||++||||+.+..  +..++.+.     .
T Consensus        19 ~~~~~vi~--~~~~~~vLl~~r--~~---g~w~~PgG~ve~g-E~~~~aa~RE~~EEtGl~~~~--~~~~~~~~-----~   83 (148)
T 2azw_A           19 YAAYIIVS--KPENNTMVLVQA--PN---GAYFLPGGEIEGT-ETKEEAIHREVLEELGISVEI--GCYLGEAD-----E   83 (148)
T ss_dssp             CEEEEECE--EGGGTEEEEEEC--TT---SCEECSEEECCTT-CCHHHHHHHHHHHHHSEEEEE--EEEEEEEE-----E
T ss_pred             eEEEEEEE--CCCCCeEEEEEc--CC---CCEeCCCcccCCC-CCHHHHHHHHHHHHhCCeeEe--eeEEEEEE-----E
Confidence            34545544  232246888764  22   4699999999998 999999999999999999853  33333210     0


Q ss_pred             eeecCCCc--cceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhH
Q 021805          225 KFFPSAGG--CDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKV  287 (307)
Q Consensus       225 ~~~~spg~--~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~kt  287 (307)
                      ..++..+.  .+..+++|.+.....         .   ....+|..++.|++++++.+++..+..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~e~~~~~W~~~~el~~~~~~~~~  136 (148)
T 2azw_A           84 YFYSNHRQTAYYNPGYFYVANTWRQ---------L---SEPLERTNTLHWVAPEEAVRLLKRGSH  136 (148)
T ss_dssp             EEEETTTTEEEEEEEEEEEEEEEEE---------C---SSCC-CCSEEEEECHHHHHHHBSCHHH
T ss_pred             EEcCCCCCcceEEEEEEEEEEcCcC---------C---cCCCCceeeEEEeeHHHHHhhhcchhH
Confidence            13443433  234466676654321         1   113456679999999999998875443

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.56  E-value=4.2e-15  Score=130.30  Aligned_cols=117  Identities=21%  Similarity=0.114  Sum_probs=75.2

Q ss_pred             EEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCcee
Q 021805          147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKF  226 (307)
Q Consensus       147 VaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~  226 (307)
                      |+++++. .+++++|||++|++.|   ..|++|||++|+| |++++||+||++||||+++..  +..++.         +
T Consensus        43 ~~~vi~~-~~~~~~vLLv~r~~~~---g~W~lPgG~ve~g-Et~~eaa~REl~EEtGl~~~~--~~~l~~---------~  106 (194)
T 2fvv_A           43 AACLCFR-SESEEEVLLVSSSRHP---DRWIVPGGGMEPE-EEPSVAAVREVCEEAGVKGTL--GRLVGI---------F  106 (194)
T ss_dssp             EEEEEES-STTCCEEEEEECSSCT---TSEECSEEECCTT-CCHHHHHHHHHHHHHCEEEEE--EEEEEE---------E
T ss_pred             EEEEEEE-ECCCCEEEEEEEeCCC---CcEECCCCcCCCC-cCHHHHHHHHHHHHhCCcccc--ceEEEE---------E
Confidence            3444332 2334579999987754   3699999999998 999999999999999999853  334442         2


Q ss_pred             ecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhHHHH
Q 021805          227 FPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTA  290 (307)
Q Consensus       227 ~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ktl~a  290 (307)
                      +. + .....+++|++.......       ..  .....+..+++|++++++.+++.+++.+.+
T Consensus       107 ~~-~-~~~~~~~~f~~~~~~~~~-------~~--~~~~e~~~~~~W~~~~el~~~l~~~~~~~~  159 (194)
T 2fvv_A          107 EN-Q-ERKHRTYVYVLIVTEVLE-------DW--EDSVNIGRKREWFKIEDAIKVLQYHKPVQA  159 (194)
T ss_dssp             EE-T-TTTEEEEEEEEEEEEECS-------SC--HHHHHHCCCEEEEEHHHHHHHHTTTCHHHH
T ss_pred             Ec-C-CCceEEEEEEEEEccccC-------CC--CCcccccceEEEEEHHHHHHHHhcCcHHHH
Confidence            21 2 124456777765321100       00  001123457899999999998876554433

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.56  E-value=4.1e-14  Score=123.40  Aligned_cols=104  Identities=17%  Similarity=0.220  Sum_probs=63.5

Q ss_pred             eEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCc-ccc--cceeeccccccCCCCceeecCCCcc--
Q 021805          159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQ-LKL--EDMIDLTAFLYPSTGCKFFPSAGGC--  233 (307)
Q Consensus       159 ~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~-i~~--~~L~~L~~l~~~~~~~~~~~spg~~--  233 (307)
                      ++|||+++.+.    ..|++|||++|+| |++.+||+||++||||++ +..  ..+..+          .++..++..  
T Consensus        58 ~~vLL~~r~~~----g~w~lPgG~ve~g-Es~~eaa~REl~EEtGl~~~~~~~~~~~~~----------~~~~~~~~~~~  122 (197)
T 3fcm_A           58 NKFLMIHHNIY----NSWAWTGGHSDNE-KDQLKVAIKELKEETGVKNPTPLLDKAFAL----------DVLTVNGHIKR  122 (197)
T ss_dssp             CEEEEEEETTT----TEEECEEEECTTC-CBHHHHHHHHHHHHHCCSSCEESCSSCSEE----------EEEEECCEEET
T ss_pred             CEEEEEEecCC----CCEECCccccCCC-CCHHHHHHHHHHHHHCCCcccccCCCceEE----------EEeeecCcccc
Confidence            47999886532    3799999999998 999999999999999998 421  011111          122222211  


Q ss_pred             -------ceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhH
Q 021805          234 -------DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKV  287 (307)
Q Consensus       234 -------~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~kt  287 (307)
                             ......|++.....        .  .-..+++|..+++|++++++.+++.+...
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~--------~--~~~~~~~E~~~~~W~~~~el~~~~~~~~~  173 (197)
T 3fcm_A          123 GKYVSSHLHLNLTYLIECSED--------E--TLMLKEDENSGVMWIPFNEISKYCSEPHM  173 (197)
T ss_dssp             TEEECCEEEEEEEEEEECCTT--------S--CCCCCC----CEEEEEGGGHHHHCCCGGG
T ss_pred             CcccCCceeEEEEEEEEeCCC--------c--ccCCCcccccceEEccHHHHHhhcCCHHH
Confidence                   11113455543211        1  11235688899999999999999885443

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.55  E-value=6.5e-14  Score=116.45  Aligned_cols=97  Identities=16%  Similarity=0.203  Sum_probs=62.8

Q ss_pred             EEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEE
Q 021805          161 AILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLF  240 (307)
Q Consensus       161 VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf  240 (307)
                      +||+++...+ ... |++|||++|+| |++.+||+||++||||+++....+....          .+..+......+++|
T Consensus        25 vLl~~r~~~~-~~g-w~lPgG~ve~g-E~~~~aa~RE~~EEtGl~~~~~~~~~~~----------~~~~~~~~~~~~~~~   91 (155)
T 2b06_A           25 MQYRAPENNR-WSG-YAFPGGHVEND-EAFAESVIREIYEETGLTIQNPQLVGIK----------NWPLDTGGRYIVICY   91 (155)
T ss_dssp             EEEEC------CCE-EECCCCBCCTT-SCHHHHHHHHHHHHHSEEEESCEEEEEE----------EEECTTSCEEEEEEE
T ss_pred             EEEEECCCCC-CCC-EeccceecCCC-CCHHHHHHHHHHHHhCccccCCcEEEEE----------eeccCCCceEEEEEE
Confidence            5554443332 233 89999999998 9999999999999999998643333222          122222344556666


Q ss_pred             EEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          241 LYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       241 ~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      .+....         +    .....|..+++|++++++.++..
T Consensus        92 ~~~~~~---------~----~~~~~e~~~~~W~~~~el~~~~~  121 (155)
T 2b06_A           92 KATEFS---------G----TLQSSEEGEVSWVQKDQIPNLNL  121 (155)
T ss_dssp             EECEEE---------E----CCCCBTTBEEEEEEGGGGGGSCB
T ss_pred             EEEecC---------C----CCCCCcceeeEEeeHHHhhhCCC
Confidence            654321         1    12346778999999999998765

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.54  E-value=4.6e-15  Score=119.00  Aligned_cols=99  Identities=16%  Similarity=0.071  Sum_probs=68.0

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL  239 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l  239 (307)
                      ++||+++.+.+.....|++|||.+|+| |++.+||+||++||||+.+..  +..++.+        .+..+ .....+++
T Consensus        17 ~vLl~~r~~~~~~~g~w~~PgG~~e~g-E~~~~aa~RE~~EE~G~~~~~--~~~~~~~--------~~~~~-~~~~~~~~   84 (129)
T 1mut_A           17 EIFITRRAADAHMANKLEFPGGKIEMG-ETPEQAVVRELQEEVGITPQH--FSLFEKL--------EYEFP-DRHITLWF   84 (129)
T ss_dssp             EEEEEECSSCCSSSCCEECCCCCSSSC-SSTTHHHHHHHHTTTCCSSCE--ECCCCCC--------BCCCS-SCEEECCC
T ss_pred             EEEEEEeCCCCCCCCeEECCccCcCCC-CCHHHHHHHHHHHHhCCcccc--ceEEEEE--------EEecC-CceEEEEE
Confidence            698888766544456899999999998 999999999999999999853  3333321        12112 12233455


Q ss_pred             EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          240 FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       240 f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      |.+....         +    ....+|..++.|++++++.++..
T Consensus        85 ~~~~~~~---------~----~~~~~e~~~~~W~~~~el~~~~~  115 (129)
T 1mut_A           85 WLVERWE---------G----EPWGKEGQPGEWMSLVGLNADDF  115 (129)
T ss_dssp             EEEEECS---------S----CCCCCSSCCCEEEESSSCCTTTS
T ss_pred             EEEEccC---------C----ccCCcccceeEEeCHHHcccccC
Confidence            6655321         1    12456777899999999988754

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.53  E-value=4.7e-14  Score=117.32  Aligned_cols=100  Identities=14%  Similarity=0.119  Sum_probs=66.8

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCcc-ceEEE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGC-DEEIS  238 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~-~e~i~  238 (307)
                      +|||+++      ...|++|||++|+| |++.+||+||++||||+++...++.....        ..++..+.. ....+
T Consensus        31 ~vLl~~r------~~~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~~~~~~~~~~~~--------~~~~~~~~~~~~~~~   95 (154)
T 2pqv_A           31 KLLVTKD------KGKYYTIGGAIQVN-ESTEDAVVREVKEELGVKAQAGQLAFVVE--------NRFEVDGVSYHNIEF   95 (154)
T ss_dssp             EEEEEEE------TTEEECEEEECBTT-CCHHHHHHHHHHHHHCCCEEEEEEEEEEE--------EEEEETTEEEEEEEE
T ss_pred             EEEEEec------CCeEECcccCcCCC-CCHHHHHHHHHHHHhCCeeeeceEEEEEe--------eeecCCCCcceEEEE
Confidence            5888876      24799999999998 99999999999999999986444333321        133333332 22344


Q ss_pred             EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      +|.+.....         ......+++|..++.|++++++.++..
T Consensus        96 ~f~~~~~~~---------~~~~~~~~~e~~~~~W~~~~el~~~~~  131 (154)
T 2pqv_A           96 HYLVDLLED---------APLTMQEDEKRQPCEWIDLDKLQNIQL  131 (154)
T ss_dssp             EEEEEESSC---------CCSEEEETTEEEEEEEEEGGGGGGSCE
T ss_pred             EEEEEecCC---------CCcccCCCCceeeEEEeEHHHHhhcCc
Confidence            566654211         100012456788999999999988653

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.53  E-value=6.8e-14  Score=128.97  Aligned_cols=115  Identities=19%  Similarity=0.302  Sum_probs=79.6

Q ss_pred             EEeCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccC
Q 021805          141 FARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYP  220 (307)
Q Consensus       141 ~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~  220 (307)
                      |.+...++++++ .+++  +|||++|.+.+.  ..|++|||.+|+| |++++||+||++||||+++.  .+..++..   
T Consensus       136 yp~~~~~viv~v-~~~~--~vLL~rr~~~~~--g~w~lPgG~vE~G-Et~eeAa~REv~EEtGl~v~--~~~~~~~~---  204 (269)
T 1vk6_A          136 YPQIAPCIIVAI-RRDD--SILLAQHTRHRN--GVHTVLAGFVEVG-ETLEQAVAREVMEESGIKVK--NLRYVTSQ---  204 (269)
T ss_dssp             CCCCEEEEEEEE-EETT--EEEEEEETTTCS--SCCBCEEEECCTT-CCHHHHHHHHHHHHHCCEEE--EEEEEEEE---
T ss_pred             cCCCCcEEEEEE-EeCC--EEEEEEecCCCC--CcEECCcCcCCCC-CCHHHHHHHHHHHHhCceee--eEEEEEEE---
Confidence            334333333333 3444  699999877653  4699999999998 99999999999999999985  45555431   


Q ss_pred             CCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCCh
Q 021805          221 STGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDA  285 (307)
Q Consensus       221 ~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~  285 (307)
                           .++.+   +..+.+|++....         +..  ..+++|..++.|++++|+..+..+.
T Consensus       205 -----~~~~~---~~~~~~f~a~~~~---------~~~--~~~~~E~~~~~W~~~~el~~l~~~~  250 (269)
T 1vk6_A          205 -----PWPFP---QSLMTAFMAEYDS---------GDI--VIDPKELLEANWYRYDDLPLLPPPG  250 (269)
T ss_dssp             -----EEETT---EEEEEEEEEEEEE---------CCC--CCCTTTEEEEEEEETTSCCSCCCTT
T ss_pred             -----ecCCC---CEEEEEEEEEECC---------CCc--CCCCcceEEEEEEEHHHhhhcccCc
Confidence                 23322   3466677775432         111  2356789999999999998877654

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.52  E-value=6.1e-14  Score=125.29  Aligned_cols=121  Identities=17%  Similarity=0.136  Sum_probs=73.5

Q ss_pred             eEEEccceecCCCCC-CHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCcc-ceEEEEEEEEEechhHHH
Q 021805          174 VILELPAGMLDDDKG-DFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGC-DEEISLFLYRGRVDKEII  251 (307)
Q Consensus       174 ~~wElPaG~vD~g~E-t~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~-~e~i~lf~~~~~~~~~~i  251 (307)
                      ..|+||||++|+| | ++.+||+||++||||+++....+..+..         ++..++.. ....++|++...  ....
T Consensus        75 g~w~lPGG~ve~g-E~t~~eaa~REl~EEtGl~~~~~~l~~l~~---------~~~~~~~~~~~~~~~f~~~l~--~~~~  142 (217)
T 2xsq_A           75 GRLGFPGGFVDTQ-DRSLEDGLNRELREELGEAAAAFRVERTDY---------RSSHVGSGPRVVAHFYAKRLT--LEEL  142 (217)
T ss_dssp             SCEECSEEECCTT-CSSHHHHHHHHHHHHHCGGGGGCCCCGGGE---------EEEEECSSSSEEEEEEEEECC--HHHH
T ss_pred             CeEECCceecCCC-CCCHHHHHHHHHHHHHCCCCccceeEEEEE---------EeecCCCCCeEEEEEEEEEec--cccc
Confidence            4799999999998 9 9999999999999999986434444432         33334433 334445555432  2222


Q ss_pred             HHhccCC-CccCCCCceEEEEEEchhhHhhccC-------ChhH-HHHHHHHHHHHhcCCCCCC
Q 021805          252 MQLQGKE-TGLRDHGELIKVRVVPYRELWRTTP-------DAKV-LTAIALYEMASKEELLPSR  306 (307)
Q Consensus       252 ~~~~g~~-~g~~~~~E~i~v~wvpleel~~~i~-------D~kt-l~al~L~~~~~~~g~lp~~  306 (307)
                      ....... ....++.|.+++.|+|++++.+...       +... -+..++.+.++..|++|+.
T Consensus       143 ~~~e~~~~~~~~~~~E~~~v~~vPl~~l~d~~~~~P~~L~~~~l~~~~~~i~~~l~~~~~~~~~  206 (217)
T 2xsq_A          143 LAVEAGATRAKDHGLEVLGLVRVPLYTLRDGVGGLPTFLENSFIGSAREQLLEALQDLGLLQSG  206 (217)
T ss_dssp             HHHHHHGGGSTTBTTTEEEEEECCCSBCTTSSTBHHHHTTSCBCTTHHHHHHHHHHHTTTTC--
T ss_pred             eecccccccccccCCceeeEEEEEHHHhhhccccCcHHHHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence            1111100 0122467899999999999873321       1000 1224567788889998863

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.51  E-value=3.4e-14  Score=122.94  Aligned_cols=114  Identities=11%  Similarity=0.105  Sum_probs=74.2

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecC-CCCeEEEc-cceecCCCCCCHHHHHHHHHHHHhCCcccccce-eeccccccCCC
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVP-TGRVILEL-PAGMLDDDKGDFVGTAVREVEEETGIQLKLEDM-IDLTAFLYPST  222 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p-~g~~~wEl-PaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L-~~L~~l~~~~~  222 (307)
                      +|+++++ ++++  ++||+++.... .....|++ |||++|+| |++.+||+||++||||+++..  + ..++.+.    
T Consensus        34 ~v~~~i~-~~~g--~vLl~~R~~~~~~~~g~w~~~PgG~ve~g-Et~~~aa~REl~EEtGl~~~~--~~~~~~~~~----  103 (190)
T 1hzt_A           34 AFSSWLF-NAKG--QLLVTRRALSKKAWPGVWTNSVCGHPQLG-ESNEDAVIRRCRYELGVEITP--PESIYPDFR----  103 (190)
T ss_dssp             CEEEEEE-CTTC--CEEEEEECTTCSSSTTCEEESEEECCCTT-CCHHHHHHHHHHHHHCCCBSC--CEEEETTCE----
T ss_pred             EEEEEEE-cCCC--EEEEEEeCCCCCCCCCcccCcccccCCCC-CCHHHHHHHHHHHHHCCCchh--hheeeeeEE----
Confidence            4555544 2344  58887654321 12357999 99999998 999999999999999999853  4 3443320    


Q ss_pred             CceeecCCCc--cceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          223 GCKFFPSAGG--CDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       223 ~~~~~~spg~--~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                        ..+..+++  ....+++|++..  +        +..  ..+++|..+++|++++++.+++.
T Consensus       104 --~~~~~~~~~~~~~~~~~f~~~~--~--------~~~--~~~~~E~~~~~W~~~~el~~~~~  152 (190)
T 1hzt_A          104 --YRATDPSGIVENEVCPVFAART--T--------SAL--QINDDEVMDYQWCDLADVLHGID  152 (190)
T ss_dssp             --EEEECTTSCEEEEECCEEEEEB--C--------SCC--CCCTTTEEEEEEECHHHHHHHHH
T ss_pred             --EEeeCCCCCcceEEEEEEEEec--C--------CCC--cCCccceeeEEEecHHHHHHHHH
Confidence              11122222  244556676653  2        111  23577999999999999998865

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.50  E-value=4.7e-13  Score=113.56  Aligned_cols=118  Identities=17%  Similarity=0.132  Sum_probs=73.8

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      +|+++++ +.++  +|||+++.+    ...|++|||++|+| |++.+||+||++||||+++..  +..++.+..    ..
T Consensus        10 ~v~~~i~-~~~~--~vLl~~r~~----~~~w~~p~G~~e~g-E~~~~aa~RE~~EE~G~~~~~--~~~~~~~~~----~~   75 (164)
T 2kdv_A           10 NVGIVIC-NRQG--QVMWARRFG----QHSWQFPQGGINPG-ESAEQAMYRELFEEVGLSRKD--VRILASTRN----WL   75 (164)
T ss_dssp             EEEEEEE-CTTS--EEEEEEETT----CCCEECCEEECCTT-CCHHHHHHHHHHHHHCCCGGG--EEEEEECSS----CE
T ss_pred             EEEEEEE-ccCC--EEEEEEEcC----CCeEECCeeecCCC-CCHHHHHHHHHHHHHCCCccc--eEEEEEecc----ee
Confidence            4555544 2333  688887643    34799999999998 999999999999999999853  444443100    00


Q ss_pred             eecCC----------CccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          226 FFPSA----------GGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       226 ~~~sp----------g~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      .|..+          .......++|++........+   .  .. ...+.|..+++|++++++.+.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~---~--l~-~~~~~E~~~~~W~~~~e~~~~l~  137 (164)
T 2kdv_A           76 RYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSGDAEI---N--MQ-TSSTPEFDGWRWVSYWYPVRQVV  137 (164)
T ss_dssp             EEECCTTTCCTTSSSCCCEEEEEEEEEEESSCGGGC---C--SC-SSSSCSEEEEEEEETTTGGGGSC
T ss_pred             EEecCcceeeeccCcccccceeEEEEEEecCCcccc---c--cC-CCCCchhceEEEecHHHhhhhhh
Confidence            12222          223345677877643221111   0  00 01346888999999999877654

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.50  E-value=2.3e-13  Score=129.72  Aligned_cols=113  Identities=18%  Similarity=0.167  Sum_probs=71.2

Q ss_pred             CCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCC----
Q 021805          156 EGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAG----  231 (307)
Q Consensus       156 ~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg----  231 (307)
                      +++.+|||+++.+.    ..|+||||++|+| |++.+||+||++||||+++....+.....        ..++.+|    
T Consensus        35 ~~~~~vLLv~r~~~----g~W~lPgG~ve~g-Es~~~AA~REl~EEtGl~~~~~~~l~~~~--------~~~~~~g~~~~  101 (364)
T 3fjy_A           35 LDSIEVCIVHRPKY----DDWSWPKGKLEQN-ETHRHAAVREIGEETGSPVKLGPYLCEVE--------YPLSEEGKKTR  101 (364)
T ss_dssp             HTTEEEEEEEETTT----TEEECCEEECCTT-CCHHHHHHHHHHHHHSCCEEEEEEEEEEC-------------------
T ss_pred             CCceEEEEEEcCCC----CCEECCcCCCCCC-CCHHHHHHHHHHHHhCCeeeeccccceEE--------EeccCCCcccc
Confidence            34458999877332    4799999999998 99999999999999999986433322211        1222222    


Q ss_pred             ------ccceEEEEEEEEEechhHHHH---HhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          232 ------GCDEEISLFLYRGRVDKEIIM---QLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       232 ------~~~e~i~lf~~~~~~~~~~i~---~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                            .....+++|++........+.   .+...  ...+++|..+++|++++++.+++.
T Consensus       102 ~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~--~~~~~~E~~~~~W~~~~e~~~~~~  160 (364)
T 3fjy_A          102 HSHDCTADTKHTLYWMAQPISADDAEHLLDAFGPV--HRADVGEINDIVWVSVREARKILS  160 (364)
T ss_dssp             ----------CEEEEEEEECCHHHHHTTHHHHCCC--CCCCTTTCCEEEEEEHHHHHHHCS
T ss_pred             cccccccCceEEEEEEEEecCCccccccccccCcc--ccCCccceeeeecCcHHHHHHHhc
Confidence                  124566777776543211100   01111  123668999999999999999887

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.47  E-value=2.5e-13  Score=118.00  Aligned_cols=99  Identities=19%  Similarity=0.170  Sum_probs=64.2

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccc--eEE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCD--EEI  237 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~--e~i  237 (307)
                      +|||+++.+    ...|++|||++|+| |++.+||+||++||||+++...++..+..        ..+...+...  ..+
T Consensus        16 ~vLL~~r~~----~g~W~lPGG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~~~~~~--------~~~~~~~~~~~~~~~   82 (188)
T 3fk9_A           16 QVLLLQKPR----RGWWVAPGGKMEAG-ESILETVKREYWEETGITVKNPELKGIFS--------MVIFDEGKIVSEWML   82 (188)
T ss_dssp             EEEEEECTT----TCCEECCEEECCTT-CCHHHHHHHHHHHHHSCEESSCEEEEEEE--------EEEEETTEEEEEEEE
T ss_pred             EEEEEEeCC----CCeEECCeecccCC-CCHHHHHHHHHHHHHCCCCCCceEEEEEE--------EEecCCCcceEEEEE
Confidence            688887532    34799999999998 99999999999999999986544433322        1222222111  144


Q ss_pred             EEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          238 SLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       238 ~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      ++|.+....         +.   .....|..++.|++++++.++..
T Consensus        83 ~~f~a~~~~---------~~---~~~~~e~~~~~W~~~~el~~~~l  116 (188)
T 3fk9_A           83 FTFKATEHE---------GE---MLKQSPEGKLEWKKKDEVLELPM  116 (188)
T ss_dssp             EEEEESCEE---------SC---CCSEETTEEEEEEEGGGGGGSCC
T ss_pred             EEEEEECCC---------CC---CcCCCCCEeEEEEEHHHhhhCCC
Confidence            555553221         11   11233446899999999987654

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.47  E-value=2.4e-13  Score=127.30  Aligned_cols=105  Identities=16%  Similarity=0.321  Sum_probs=66.2

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCcc---ceE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGC---DEE  236 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~---~e~  236 (307)
                      +|||+++.+.+ +...|++|||++|+| |++.+||+||++||||+++....+.  +.+..    ...|..|+..   ...
T Consensus       215 ~vLL~~r~~~~-~~g~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~  286 (341)
T 2qjo_A          215 HVLMVRRQAKP-GLGLIALPGGFIKQN-ETLVEGMLRELKEETRLKVPLPVLR--GSIVD----SHVFDAPGRSLRGRTI  286 (341)
T ss_dssp             EEEEEECCSSS-STTCEECSEEECCTT-SCHHHHHHHHHHHHHCCSSCHHHHH--HTEEE----EEEECCTTSCTTSCEE
T ss_pred             EEEEEEecCCC-CCCeEECCCCcCCCC-CCHHHHHHHHHhhhhCCcccccccc--ccccc----eEEEeCCCCCCCCcEE
Confidence            69998887654 345799999999998 9999999999999999998643221  10000    0245555442   234


Q ss_pred             EEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhc
Q 021805          237 ISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT  281 (307)
Q Consensus       237 i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~  281 (307)
                      +++|++....         +......+++|..++.|++++++.++
T Consensus       287 ~~~f~~~~~~---------~~~~~~~~~~e~~~~~W~~~~el~~~  322 (341)
T 2qjo_A          287 THAYFIQLPG---------GELPAVKGGDDAQKAWWMSLADLYAQ  322 (341)
T ss_dssp             EEEEEEECCS---------SSCCCCC------CEEEEEHHHHHHT
T ss_pred             EEEEEEEecC---------CCcCccCCCCceeeEEEeeHHHHhhh
Confidence            5667765421         11111235678889999999999885

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.47  E-value=1.6e-13  Score=114.96  Aligned_cols=44  Identities=27%  Similarity=0.409  Sum_probs=37.9

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccc
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKL  208 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~  208 (307)
                      +|||+++.+    ...|++|||++|+| |++.+||+||++||||+++..
T Consensus        13 ~vLL~~r~~----~g~W~lPgG~ve~g-Es~~~aa~REl~EEtGl~~~~   56 (156)
T 1k2e_A           13 KVLLVKHKR----LGVYIYPGGHVEHN-ETPIEAVKREFEEETGIVVEP   56 (156)
T ss_dssp             EEEEEECTT----TCSEECSEEECCTT-CCHHHHHHHHHHHHHSEEEEE
T ss_pred             EEEEEEEcC----CCcEECCeeecCCC-CCHHHHHHHHHHHHHCCccee
Confidence            588887643    23699999999998 999999999999999999864

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.47  E-value=5.2e-13  Score=125.83  Aligned_cols=104  Identities=18%  Similarity=0.214  Sum_probs=71.2

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceee-ccccccCCCCceeecCCCccc---e
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMID-LTAFLYPSTGCKFFPSAGGCD---E  235 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~-L~~l~~~~~~~~~~~spg~~~---e  235 (307)
                      +|||+++.+.+ +...|++|||++|+| |++++||+||++||||+++....+.. +..       ...|..|+...   .
T Consensus       220 ~vLL~~r~~~~-~~g~w~lPgG~ve~g-Et~~~aa~REl~EEtGl~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~  290 (352)
T 2qjt_B          220 HILMVQRKAHP-GKDLWALPGGFLECD-ETIAQAIIRELFEETNINLTHEQLAIAKRC-------EKVFDYPDRSVRGRT  290 (352)
T ss_dssp             EEEEEEESSSS-STTCEECSEEECCTT-SCHHHHHHHHHHHHHCCSCCHHHHHHHEEE-------EEEECCTTSCTTSEE
T ss_pred             EEEEEEEcCCC-CCCeEECCCCcCCCC-CCHHHHHHHHHHHhhCCCcccchhcceeee-------eEEecCCCCCCCccE
Confidence            69999887655 345799999999998 99999999999999999986432210 000       12455555422   3


Q ss_pred             EEEEEEEEEechhHHHHHhccC-CCccCCCCceEEEEEEch-hhHhhc
Q 021805          236 EISLFLYRGRVDKEIIMQLQGK-ETGLRDHGELIKVRVVPY-RELWRT  281 (307)
Q Consensus       236 ~i~lf~~~~~~~~~~i~~~~g~-~~g~~~~~E~i~v~wvpl-eel~~~  281 (307)
                      .+++|++....         +. .....+++|..+++|+++ +++.++
T Consensus       291 ~~~~f~~~~~~---------~~~~~~~~~~~E~~~~~W~~~~~el~~~  329 (352)
T 2qjt_B          291 ISHVGLFVFDQ---------WPSLPEINAADDAKDVKWISLGSNIKNI  329 (352)
T ss_dssp             EEEEEEEEECS---------CSSCCCCCCCTTEEEEEEEESSHHHHHT
T ss_pred             EEEEEEEEEeC---------CCCCCccCCCccceEEEEecHHHHHHhh
Confidence            45667665421         11 011235688999999999 999885

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.46  E-value=6.1e-13  Score=113.28  Aligned_cols=88  Identities=18%  Similarity=0.263  Sum_probs=59.5

Q ss_pred             cCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccc
Q 021805          155 SEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCD  234 (307)
Q Consensus       155 ~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~  234 (307)
                      +++  ++||+++.     ...|++|||++|+| |++.+||+||++||||+++.  .+..++          .|..+.   
T Consensus        25 ~~~--~vLL~~r~-----~g~w~lPgG~ve~g-Es~~~aa~REl~EEtGl~~~--~~~~l~----------~~~~~~---   81 (163)
T 3f13_A           25 MPD--GVLVTASR-----GGRYNLPGGKANRG-ELRSQALIREIREETGLRIN--SMLYLF----------DHITPF---   81 (163)
T ss_dssp             ETT--EEEEEECC--------BBCSEEECCTT-CCHHHHHHHHHHHHHCCCCC--EEEEEE----------EEECSS---
T ss_pred             eCC--EEEEEEEC-----CCeEECCceeCCCC-CCHHHHHHHHHHHHHCcccc--eeEEEE----------EEecCC---
Confidence            444  58888663     24799999999998 99999999999999999985  344443          344443   


Q ss_pred             eEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhH
Q 021805          235 EEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYREL  278 (307)
Q Consensus       235 e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel  278 (307)
                      ...++|++..  +        +..   ...+|..++.|++.+++
T Consensus        82 ~~~~~f~~~~--~--------~~~---~~~~E~~~~~W~~~~~~  112 (163)
T 3f13_A           82 NAHKVYLCIA--Q--------GQP---KPQNEIERIALVSSPDT  112 (163)
T ss_dssp             EEEEEEEEEC-----------CCC---CCCTTCCEEEEESSTTC
T ss_pred             eEEEEEEEEE--C--------CcC---ccCCCceEEEEECcccc
Confidence            5566677642  2        211   12348889999995444

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.44  E-value=1e-12  Score=109.55  Aligned_cols=100  Identities=8%  Similarity=0.023  Sum_probs=65.7

Q ss_pred             eEEEEEEeeecCCCCeEEEccceecCCCCCCHH-HHHHHHHHHHhC-CcccccceeeccccccCCCCceeecCCCccceE
Q 021805          159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFV-GTAVREVEEETG-IQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEE  236 (307)
Q Consensus       159 ~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~-~AA~REl~EETG-l~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~  236 (307)
                      ++|||+++.........|+||||.+|.| |++. +||+||++|||| +.+.  .+..++.+        .+.... ....
T Consensus        34 ~~vLl~~R~~~~~~~g~w~~PgG~~e~g-E~~~~~a~~REl~EE~g~l~~~--~~~~l~~~--------~~~~~~-~~~~  101 (155)
T 1x51_A           34 AQILLVQRPNSGLLAGLWEFPSVTWEPS-EQLQRKALLQELQRWAGPLPAT--HLRHLGEV--------VHTFSH-IKLT  101 (155)
T ss_dssp             EEEEEEECCCCSTTCSCEECCEEECCSS-HHHHHHHHHHHHHHHSCCCCST--TCEECCCB--------CCBCSS-CEEE
T ss_pred             CEEEEEECCCCCCCCceecCCccccCCC-CCHHHHHHHHHHHHHhCCccee--eeeecceE--------EEecCC-ccEE
Confidence            4788887655434445899999999998 9996 999999999999 8764  33344321        111111 1234


Q ss_pred             EEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          237 ISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       237 i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      +++|.+....         +    .....|..++.|++++++.++..
T Consensus       102 ~~~~~~~~~~---------~----~~~~~e~~~~~W~~~~el~~~~~  135 (155)
T 1x51_A          102 YQVYGLALEG---------Q----TPVTTVPPGARWLTQEEFHTAAV  135 (155)
T ss_dssp             EEEEEEECSS---------C----CCCCCCCTTEEEEEHHHHHHSCC
T ss_pred             EEEEEEEEcC---------C----CCCCCCCCccEEccHHHhhhcCC
Confidence            5566654311         1    11234555789999999988765

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.35  E-value=7.2e-13  Score=118.07  Aligned_cols=103  Identities=17%  Similarity=0.160  Sum_probs=63.4

Q ss_pred             cCCceEEEEEEeeecCC---CCeEEEc-cceecCCCCCC--H----HHHHHHHHHHHhCCcccccceeeccccccCCCCc
Q 021805          155 SEGETYAILTEQVRVPT---GRVILEL-PAGMLDDDKGD--F----VGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGC  224 (307)
Q Consensus       155 ~~g~~~VLLvrQ~R~p~---g~~~wEl-PaG~vD~g~Et--~----~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~  224 (307)
                      +++  ++||+++...+.   -...|++ |||++|+| |+  +    ++||+||++||||+++.  .+..++..       
T Consensus        77 ~~g--rvLl~~R~~~~~e~~~~g~w~~gPGGhVE~G-Es~~p~EtleeAa~REl~EEtGl~v~--~~~~ig~~-------  144 (211)
T 3e57_A           77 DGD--RVLITKRTTKQSEKRLHNLYSLGIGGHVREG-DGATPREAFLKGLEREVNEEVDVSLR--ELEFLGLI-------  144 (211)
T ss_dssp             ETT--EEEEEEC------------CBSSEECCCBGG-GCSSHHHHHHHHHHHHHHHHEEEEEE--EEEEEEEE-------
T ss_pred             ECC--EEEEEEECCCCCcccccCCcccccceEEeCC-CCCCchhhHHHHHHHHHHHHhCCeee--ccEEEEEE-------
Confidence            445  588877654431   1136888 99999998 98  4    99999999999999885  34444321       


Q ss_pred             eeecC-CCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          225 KFFPS-AGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       225 ~~~~s-pg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                       .+.. +.+......+|.|... .        +    .+.+.|..++.|++++++.++..
T Consensus       145 -~~~~~~~~~~~l~~~f~~~~~-~--------g----~~~~~E~~~~~W~~~~eL~~~~~  190 (211)
T 3e57_A          145 -NSSTTEVSRVHLGALFLGRGK-F--------F----SVKEKDLFEWELIKLEELEKFSG  190 (211)
T ss_dssp             -ECCSSHHHHTEEEEEEEEEEE-E--------E----EESCTTTCEEEEEEHHHHHHHGG
T ss_pred             -eccCCCCCeEEEEEEEEEEeC-C--------c----eeCCCCeEEEEEEEHHHHHHhHh
Confidence             1211 1122223345766543 1        1    22456677899999999998753

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.33  E-value=7.8e-12  Score=116.88  Aligned_cols=141  Identities=16%  Similarity=0.167  Sum_probs=91.6

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCC---CCeEE-EccceecCCCCCCHHHHHHHHHHHHhCCcccc-cceeeccccccC
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPT---GRVIL-ELPAGMLDDDKGDFVGTAVREVEEETGIQLKL-EDMIDLTAFLYP  220 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~---g~~~w-ElPaG~vD~g~Et~~~AA~REl~EETGl~i~~-~~L~~L~~l~~~  220 (307)
                      +|-|.++..+++..++++.+  |...   ..++| .+|||++++| |++.+||+||++||+|+.+.. ..+..++.+.  
T Consensus       120 ~vh~~~~~~~~~~~~lll~r--Rs~~K~~~PG~wd~svaG~i~~G-Es~~eaA~REl~EElGI~~~~~~~l~~~g~i~--  194 (300)
T 3dup_A          120 GVHLNGYVGAGADLHLWIGR--RSPDKSVAPGKLDNMVAGGQPAD-LSLRQNLIKECAEEADLPEALARQAIPVGAIT--  194 (300)
T ss_dssp             EEEEEEEESCGGGCEEEEEE--ECTTCSSSTTCEEESEEEECCTT-SCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEE--
T ss_pred             EEEEEEEEecCCeeEEEEEe--CCCcccCCCCccccccccCCCCC-CCHHHHHHHHHHHHhCCChhhhhhccccceEE--
Confidence            55666665433333677754  4333   24478 6999999998 999999999999999998742 1233333321  


Q ss_pred             CCCceeecC-CCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCC-hh--HHHHHHHHHH
Q 021805          221 STGCKFFPS-AGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPD-AK--VLTAIALYEM  296 (307)
Q Consensus       221 ~~~~~~~~s-pg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D-~k--tl~al~L~~~  296 (307)
                          ..+.+ +|...+.+++|.+..  +.+        ..-..+++|..+++|++++|+.+++.+ ++  .-.++.+...
T Consensus       195 ----y~~~~~~G~~~E~~~vy~~~l--~~~--------~~p~~~~~EV~~~~~v~~~El~~~l~~pg~F~p~~~lV~ldf  260 (300)
T 3dup_A          195 ----YCMESPAGIKPDTLFLYDLAL--PED--------FRPHNTDGEMADFMLWPAAKVVEAVRTTEAFKFNVNLTVIDF  260 (300)
T ss_dssp             ----EEEEETTEEEEEEEEEEEEEC--CTT--------CCCCCTTSSEEEEEEEEHHHHHHHHHHCCCBCTTHHHHHHHH
T ss_pred             ----EEEecCCCeEEEEEEEEEEEe--cCC--------CcCCCCchHhheEEEECHHHHHHHHhcCCCcCccHHHHHHHH
Confidence                12333 344666667775543  211        111347899999999999999988764 32  2244456688


Q ss_pred             HHhcCCCCC
Q 021805          297 ASKEELLPS  305 (307)
Q Consensus       297 ~~~~g~lp~  305 (307)
                      +.++|++-+
T Consensus       261 l~RhG~i~~  269 (300)
T 3dup_A          261 AIRHGLIDP  269 (300)
T ss_dssp             HHHTTSSCT
T ss_pred             HHHhCCcCC
Confidence            888898754

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.25  E-value=3.6e-11  Score=111.83  Aligned_cols=123  Identities=16%  Similarity=0.137  Sum_probs=72.1

Q ss_pred             eEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCccccc---------ceeeccccccCCC-Cceeec
Q 021805          159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLE---------DMIDLTAFLYPST-GCKFFP  228 (307)
Q Consensus       159 ~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~---------~L~~L~~l~~~~~-~~~~~~  228 (307)
                      .+|||+++...    ..|+||||++|+| |++.+||+||++||||+.+...         .+..+.... +.. ....+.
T Consensus       139 l~vLl~~r~~~----g~W~lPGG~Ve~G-Es~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~-g~~vy~~~~~  212 (292)
T 1q33_A          139 LQFVAIKRKDC----GEWAIPGGMVDPG-EKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQD-HLVIYKGYVD  212 (292)
T ss_dssp             EEEEEEECTTT----CSEECCCEECCTT-CCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTS-EEEEEEEECC
T ss_pred             eEEEEEEecCC----CcEeCCCcccCCC-CCHHHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcc-cceeeccccc
Confidence            36888765432    3699999999998 9999999999999999984211         222232100 000 001233


Q ss_pred             CCCccce---EEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhHHHHHHH
Q 021805          229 SAGGCDE---EISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIAL  293 (307)
Q Consensus       229 spg~~~e---~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ktl~al~L  293 (307)
                      .|+..+.   ...+|.+.... .+.+    +... ....+|..+++|++++++.++..+.+.+...++
T Consensus       213 dpr~~d~~~~~~~~f~~~~~~-g~~~----~~~~-~~~~~E~~~~~W~~~del~~L~~~h~~il~~~~  274 (292)
T 1q33_A          213 DPRNTDNAWMETEAVNYHDET-GEIM----DNLM-LEAGDDAGKVKWVDINDKLKLYASHSQFIKLVA  274 (292)
T ss_dssp             CTTCCSSEEEEEEEEEEEESS-STTT----TTCC-CCCCTTCSEEEEEECCTTCCCSTTHHHHHHHHH
T ss_pred             CCCCCcccEEEEEEEEEEeCC-Cccc----cccc-cCCCCccceEEEEEcccCcccCHhHHHHHHHHH
Confidence            4433222   22334443211 1000    0001 235678899999999999988888877665443

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.20  E-value=5.3e-11  Score=107.39  Aligned_cols=114  Identities=21%  Similarity=0.172  Sum_probs=73.5

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCC---CCeEEEccc-eecCCCC-----CC---HHHHHHHHHHHHhCCcccc---cc
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPT---GRVILELPA-GMLDDDK-----GD---FVGTAVREVEEETGIQLKL---ED  210 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~---g~~~wElPa-G~vD~g~-----Et---~~~AA~REl~EETGl~i~~---~~  210 (307)
                      +|+|+++ +.++  ++||.+  |...   ....|++|+ |++++|.     |+   +.+||+||++||||+.+..   .+
T Consensus        61 av~v~v~-~~~g--~lLLq~--R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~  135 (235)
T 2dho_A           61 AFSVFLF-NTEN--KLLLQQ--RSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEE  135 (235)
T ss_dssp             EEEEEEE-CTTC--CEEEEE--ECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGG
T ss_pred             EEEEEEE-cCCC--EEEEEE--ecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhh
Confidence            4555544 3344  577754  4332   234799994 9999851     56   4999999999999998641   24


Q ss_pred             eeeccccccCCCCceeecC--CCc--cceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCC
Q 021805          211 MIDLTAFLYPSTGCKFFPS--AGG--CDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPD  284 (307)
Q Consensus       211 L~~L~~l~~~~~~~~~~~s--pg~--~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D  284 (307)
                      +..++.+        .|..  .+.  .++.+++|++...          +..  .++++|..+++|++++++.+++.+
T Consensus       136 l~~l~~~--------~y~~~~~~~~~~~e~~~vf~~~~~----------~~~--~~~~~Ev~~~~wv~~~el~~~l~~  193 (235)
T 2dho_A          136 INYLTRI--------HYKAQSDGIWGEHEIDYILLVRMN----------VTL--NPDPNEIKSYCYVSKEELKELLKK  193 (235)
T ss_dssp             SEEEEEE--------EEEEECSSSBEEEEEEEEEEEECC----------CCC--CCCTTTEEEEEEECHHHHHHHHHH
T ss_pred             cEEEEEE--------EEeccCCCccceeEEEEEEEEEEC----------CCC--cCChHHEEEEEEEcHHHHHHHHhh
Confidence            5566542        2322  222  3456677876532          111  246789999999999999887653

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.18  E-value=4.9e-11  Score=108.43  Aligned_cols=114  Identities=19%  Similarity=0.186  Sum_probs=73.4

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCC---CCeEEEccc-eecCCC-----CCCH---HHHHHHHHHHHhCCcccc---cc
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPT---GRVILELPA-GMLDDD-----KGDF---VGTAVREVEEETGIQLKL---ED  210 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~---g~~~wElPa-G~vD~g-----~Et~---~~AA~REl~EETGl~i~~---~~  210 (307)
                      +|+|+++ +.++  ++||.+  |...   ....|++|+ |++++|     +|++   .+||+||++||||+.+..   .+
T Consensus        72 av~v~v~-~~~g--~lLLqr--Rs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~  146 (246)
T 2pny_A           72 AFSVVLF-NTKN--RILIQQ--RSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPED  146 (246)
T ss_dssp             EEEEEEE-CTTC--CEEEEE--ECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGG
T ss_pred             EEEEEEE-eCCC--EEEEEE--ecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCccc
Confidence            4555544 3344  577754  4332   234799995 999974     1676   899999999999998641   24


Q ss_pred             eeeccccccCCCCceeecC--CCc--cceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCC
Q 021805          211 MIDLTAFLYPSTGCKFFPS--AGG--CDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPD  284 (307)
Q Consensus       211 L~~L~~l~~~~~~~~~~~s--pg~--~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D  284 (307)
                      +..++.+        .|..  .+.  .++.+++|++...          +..  .++++|..+++|++++++.+++.+
T Consensus       147 l~~l~~~--------~y~~~~~~~~~~~e~~~vf~~~~~----------~~~--~~~~~Ev~~~~wv~~eel~~~l~~  204 (246)
T 2pny_A          147 IVFMTIY--------HHKAKSDRIWGEHEICYLLLVRKN----------VTL--NPDPSETKSILYLSQEELWELLER  204 (246)
T ss_dssp             SEEEEEE--------EEEEESSSSBEEEEEEEEEEEECC----------CCC--CCCTTTEEEEEEECHHHHHHHHHH
T ss_pred             cEEEEEE--------EEEecCCCceeeeEEEEEEEEEEC----------CCC--CCChHHeeEEEEEeHHHHHHHHHh
Confidence            5566542        2322  222  3456677776532          111  246789999999999999887653

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.13  E-value=1.4e-10  Score=104.64  Aligned_cols=61  Identities=21%  Similarity=0.335  Sum_probs=43.0

Q ss_pred             EEEEEEEEecCCc-eEEEEEEeeecCC-CCeEEEccceecCCCCCC--------------------HHHHHHHHHHHHhC
Q 021805          146 AVAVLILLDSEGE-TYAILTEQVRVPT-GRVILELPAGMLDDDKGD--------------------FVGTAVREVEEETG  203 (307)
Q Consensus       146 aVaVl~il~~~g~-~~VLLvrQ~R~p~-g~~~wElPaG~vD~g~Et--------------------~~~AA~REl~EETG  203 (307)
                      ++++|++.+.++. .+|||+++..... ..+.|.||||.+|++ |+                    +..||+||++||||
T Consensus        10 aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~-d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~G   88 (232)
T 3qsj_A           10 AATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPS-DAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEIG   88 (232)
T ss_dssp             EEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHH-HHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHHS
T ss_pred             eEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecC-CCCchhhhcccccccccchhhHHHHHHHHHHHHHhC
Confidence            4444444322222 4798887654432 245799999999997 65                    58999999999999


Q ss_pred             Cccc
Q 021805          204 IQLK  207 (307)
Q Consensus       204 l~i~  207 (307)
                      +.+.
T Consensus        89 l~l~   92 (232)
T 3qsj_A           89 WLLA   92 (232)
T ss_dssp             CCCS
T ss_pred             ceec
Confidence            9875

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.08  E-value=3.4e-10  Score=108.40  Aligned_cols=96  Identities=17%  Similarity=0.095  Sum_probs=62.8

Q ss_pred             eEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEE
Q 021805          159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEIS  238 (307)
Q Consensus       159 ~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~  238 (307)
                      ++|||+++.......+.|+||||.+|+|  ++.+|++||++||||+++....  .++.+        .+..+. ....++
T Consensus       252 g~vLL~rR~~~g~~~GlWefPGG~ve~g--t~~~al~REl~EE~Gl~v~~~~--~l~~~--------~h~~~h-~~~~~~  318 (369)
T 3fsp_A          252 GRVLIRKRDSTGLLANLWEFPSCETDGA--DGKEKLEQMVGEQYGLQVELTE--PIVSF--------EHAFSH-LVWQLT  318 (369)
T ss_dssp             SEEEEEECCSSSTTTTCEECCEEECSSS--CTHHHHHHHHTTSSSCCEEECC--CCCEE--------EEECSS-EEEEEE
T ss_pred             CEEEEEECCCCCCcCCcccCCCcccCCC--CcHHHHHHHHHHHhCCceeeec--ccccE--------EEEcce-EEEEEE
Confidence            3688877654433445899999999985  8999999999999999985432  23221        122221 123445


Q ss_pred             EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          239 LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       239 lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      +|.+...          +      ...|..++.|++++++.++..
T Consensus       319 ~~~~~~~----------~------~~~e~~~~~Wv~~~el~~~~l  347 (369)
T 3fsp_A          319 VFPGRLV----------H------GGPVEEPYRLAPEDELKAYAF  347 (369)
T ss_dssp             EEEEEEC----------C------SSCCCTTEEEEEGGGGGGSCC
T ss_pred             EEEEEEc----------C------CCCCccccEEeeHHHhhhCCC
Confidence            5554431          1      123555688999999988654

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=98.83  E-value=1.5e-08  Score=95.55  Aligned_cols=113  Identities=14%  Similarity=0.180  Sum_probs=71.7

Q ss_pred             EEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHh-CCcccccceeeccccccCCCCceee
Q 021805          149 VLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEET-GIQLKLEDMIDLTAFLYPSTGCKFF  227 (307)
Q Consensus       149 Vl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EET-Gl~i~~~~L~~L~~l~~~~~~~~~~  227 (307)
                      |-+++.++|  +|||+     + ... |.||||+++.+ ++  ++|+||++||| |++++.   ..|..         +|
T Consensus       186 vgaii~~~g--~vLL~-----~-~~G-W~LPG~~~~~~-~~--~~a~RE~~EEttGl~v~~---~~L~~---------v~  241 (321)
T 3rh7_A          186 LGAVLEQQG--AVFLA-----G-NET-LSLPNCTVEGG-DP--ARTLAAYLEQLTGLNVTI---GFLYS---------VY  241 (321)
T ss_dssp             EEEEEESSS--CEEEB-----C-SSE-EBCCEEEESSS-CH--HHHHHHHHHHHHSSCEEE---EEEEE---------EE
T ss_pred             EEEEEEECC--EEEEe-----e-CCC-ccCCcccCCCC-hh--HHHHHHHHHHhcCCEEee---ceEEE---------EE
Confidence            333344555  48887     2 235 99999987654 43  59999999997 999964   34432         55


Q ss_pred             cCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhc-cCChhHHHHHHHHHHHHhcCCCC
Q 021805          228 PSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT-TPDAKVLTAIALYEMASKEELLP  304 (307)
Q Consensus       228 ~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~-i~D~ktl~al~L~~~~~~~g~lp  304 (307)
                      ..+.. .....+|.|+.. .                 ++..++.|++++|++.. +.+..+-..+..|..-++.|.++
T Consensus       242 ~~~~~-~~~~i~f~~~~~-~-----------------g~~~e~~~f~~~elp~~~~~~~~~~~~L~~y~~e~~~g~f~  300 (321)
T 3rh7_A          242 EDKSD-GRQNIVYHALAS-D-----------------GAPRQGRFLRPAELAAAKFSSSATADIINRFVLESSIGNFG  300 (321)
T ss_dssp             ECTTT-CCEEEEEEEEEC-S-----------------SCCSSSEEECHHHHTTCEESSHHHHHHHHHHHHTTSCSSCC
T ss_pred             EcCCC-ceEEEEEEEEeC-C-----------------CCeeeeEEECHHHCCCcccCCHHHHHHHHHHHHHhhcCCCC
Confidence            55543 223335655431 1                 12356899999999865 34666656666777666767654

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=98.67  E-value=1.6e-07  Score=82.66  Aligned_cols=83  Identities=19%  Similarity=0.189  Sum_probs=53.3

Q ss_pred             ecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCC------cccccceeeccccccCCCCceee
Q 021805          154 DSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGI------QLKLEDMIDLTAFLYPSTGCKFF  227 (307)
Q Consensus       154 ~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl------~i~~~~L~~L~~l~~~~~~~~~~  227 (307)
                      ++.+..+|||++.. .    ..|+||||.+|+| |+.++|.+||+.||+|.      ++..+  ..++.+.-+.+...+|
T Consensus        68 ~~~~~phVLLlq~~-~----~~f~LPGGkle~g-E~~~eaL~REL~EELg~~~~~~~~~eIg--e~lg~wwRp~fet~~Y  139 (208)
T 3bho_A           68 HEHRLPHVLLLQLG-T----TFFKLPGGELNPG-EDEVEGLKRLMTEILGRQDGVLQDWVID--DCIGNWWRPNFEPPQY  139 (208)
T ss_dssp             EETTEEEEEEEEEE-T----TEEECSEEECCTT-CCHHHHHHHHHHHHHCCCC-----CEEE--EEEEEEEECSSSSCCB
T ss_pred             cCCCCcEEEEEEcC-C----CcEECCCcccCCC-CCHHHHHHHHHHHHhCCCcCCCccEEEh--heEEEEecCCCCCcCC
Confidence            34555679888752 1    2799999999998 99999999999999994      33222  2333333333333344


Q ss_pred             cC----CCccceEEEEEEEEE
Q 021805          228 PS----AGGCDEEISLFLYRG  244 (307)
Q Consensus       228 ~s----pg~~~e~i~lf~~~~  244 (307)
                      |.    ..-..|.+.+|++.-
T Consensus       140 PYlP~Hit~pKE~~kly~V~L  160 (208)
T 3bho_A          140 PYIPAHITKPKEHKKLFLVQL  160 (208)
T ss_dssp             SSCCTTCCSCSEEEEEEEEEC
T ss_pred             CCCCcccCchhhheeeeeEec
Confidence            32    122467788887753

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=98.61  E-value=7e-08  Score=84.41  Aligned_cols=118  Identities=18%  Similarity=0.182  Sum_probs=68.4

Q ss_pred             eeecCCCCeEEEccceecCCCCC-CHHHHHHHHHHHHhCC-cccccceeeccccccCCCCceeecCCCccceEEEEEEEE
Q 021805          166 QVRVPTGRVILELPAGMLDDDKG-DFVGTAVREVEEETGI-QLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYR  243 (307)
Q Consensus       166 Q~R~p~g~~~wElPaG~vD~g~E-t~~~AA~REl~EETGl-~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~  243 (307)
                      |.|.+   ..||||||+||+| | ++++|..||+.||+|+ .+...+  .+..        ..+..|  ..-..++|.|+
T Consensus        49 Q~R~~---G~weFPGGkVe~g-E~t~e~aL~REl~EElg~~~V~~~~--y~~s--------~~~~yp--~~V~LHfY~cr  112 (214)
T 3kvh_A           49 QMRFD---GLLGFPGGFVDRR-FWSLEDGLNRVLGLGLGCLRLTEAD--YLSS--------HLTEGP--HRVVAHLYARQ  112 (214)
T ss_dssp             EEETT---SCEECSEEEECTT-TCCHHHHHHHSCCSCC---CCCGGG--EEEE--------EEC------CEEEEEEEEE
T ss_pred             eeeeC---CEEeCCCccCCCC-CCCHHHHHHHHHHHhhCCeeeeeee--eEEE--------EeccCC--CEEEEEEEEEE
Confidence            55653   4799999999998 8 9999999999999997 454333  2222        123333  24456777776


Q ss_pred             EechhHHHHHhccCCCccCC-CCceEEEEEEchhhHhhccC------------ChhHHHHHHHHHHHHhcCCCCC
Q 021805          244 GRVDKEIIMQLQGKETGLRD-HGELIKVRVVPYRELWRTTP------------DAKVLTAIALYEMASKEELLPS  305 (307)
Q Consensus       244 ~~~~~~~i~~~~g~~~g~~~-~~E~i~v~wvpleel~~~i~------------D~ktl~al~L~~~~~~~g~lp~  305 (307)
                      .....-...+++..  ...| ..|..-+.-||+=.+.+-..            +++    -+|...++..+++++
T Consensus       113 l~~Ge~~~lE~~A~--~A~d~G~EvlGlvRVPlytl~D~~gGlP~FL~nsFig~ar----~qLl~aL~~l~ll~~  181 (214)
T 3kvh_A          113 LTLEQLHAVEISAV--HSRDHGLEVLGLVRVPLYTQKDRVGGFPNFLSNAFVSTAK----CQLLFALKVLNMMPE  181 (214)
T ss_dssp             CCHHHHHHHHHHHH--TSTTBTTTEEEEEEECCCBCTTSSTBHHHHHTSCBCTTHH----HHHHHHHHHTTSSCH
T ss_pred             eeCCccchhhhccc--CCcccCceecceEEeeeEEeccCCCchhHHHHhhhHHHHH----HHHHHHHHHcCCCCH
Confidence            54332222222221  1223 34777788888765543311            322    356667777777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	307
d1mqea_	202	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobac	4e-12
d1g0sa_	209	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escheri	3e-11
d1v8ya_	158	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus	4e-10
d1vhza_	186	d.113.1.1 (A:) ADP compounds hydrolase NudE {Esche	3e-08
d1viua_	189	d.113.1.1 (A:) ADP-ribose pyrophosphatase homologu	8e-08
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	1e-06
d2fkba1	161	d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc	2e-04
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	4e-04
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	6e-04

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 62.1 bits (150), Expect = 4e-12
 Identities = 36/190 (18%), Positives = 59/190 (31%), Gaps = 27/190 (14%)

Query: 120 FLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELP 179
               + D      G  V   V     AVA++ + D        +  Q R   GR + ELP
Sbjct: 14  IFALRRDQVRMPGGGIVTREVVEHFGAVAIVAMDD---NGNIPMVYQYRHTYGRRLWELP 70

Query: 180 AGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL 239
           AG+LD        TA RE+ EE G+Q     ++                + G  DE + +
Sbjct: 71  AGLLDVAGEPPHLTAARELREEVGLQASTWQVL-----------VDLDTAPGFSDESVRV 119

Query: 240 FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWR-----TTPDAKVLTAIALY 294
           +L  G  +                    + +   P  E  R        ++  +  +   
Sbjct: 120 YLATGLREVG--------RPEAHHEEADMTMGWYPIAEAARRVLRGEIVNSIAIAGVLAV 171

Query: 295 EMASKEELLP 304
              +     P
Sbjct: 172 HAVTTGFAQP 181

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 209

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 59.7 bits (144), Expect = 3e-11
 Identities = 43/192 (22%), Positives = 73/192 (38%), Gaps = 31/192 (16%)

Query: 121 LKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRV-----I 175
            +F+  +F  +   +V   +F RG A  +L       E   I  EQ+R+          +
Sbjct: 34  YRFRHRLFNGQMSHEVRREIFERGHAAVLLPFDPVRDEVVLI--EQIRIAAYDTSETPWL 91

Query: 176 LELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDE 235
           LE+ AGM+++ +      A RE  EE G+ +K    +             F  S GG  E
Sbjct: 92  LEMVAGMIEEGE-SVEDVARREAIEEAGLIVKRTKPV-----------LSFLASPGGTSE 139

Query: 236 EISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWR-----TTPDAKVLTA 290
             S+ +       E+         GL D  E I+V VV   + ++        +A  + A
Sbjct: 140 RSSIMVG------EVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDNAASVIA 193

Query: 291 IALYEMASKEEL 302
           +  +     + L
Sbjct: 194 L-QWLQLHHQAL 204

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

 Score = 55.5 bits (133), Expect = 4e-10
 Identities = 38/162 (23%), Positives = 60/162 (37%), Gaps = 33/162 (20%)

Query: 140 VFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVE 199
           +    PAVAV+ L +       +   Q+R   G   LE+PAG+++  + D +  A RE+ 
Sbjct: 20  IVEHKPAVAVIALREGR----MLFVRQMRPAVGLAPLEIPAGLIEPGE-DPLEAARRELA 74

Query: 200 EETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKET 259
           E+TG+   L  +              +F S G  DE+  +FL     + E          
Sbjct: 75  EQTGLSGDLTYL------------FSYFVSPGFTDEKTHVFLAENLKEVE---------- 112

Query: 260 GLRDHGELIKVRVVPYRELW------RTTPDAKVLTAIALYE 295
              D  E I+V  +   E             A  L  +  Y 
Sbjct: 113 AHPDEDEAIEVVWMRPEEALERHQRGEVEFSATGLVGVLYYH 154

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]} Length = 186

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

 Score = 50.5 bits (120), Expect = 3e-08
 Identities = 25/187 (13%), Positives = 56/187 (29%), Gaps = 29/187 (15%)

Query: 120 FLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELP 179
               ++       G +            AV+I+   +   + IL  +  V T    L   
Sbjct: 22  LFTVESVDLEFSNGVRRVYERMRPTNREAVMIVPIVDD--HLILIREYAVGTESYELGFS 79

Query: 180 AGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL 239
            G++D  +      A RE++EE G        +            K   +      ++++
Sbjct: 80  KGLIDPGE-SVYEAANRELKEEVGFGANDLTFL-----------KKLSMAPSYFSSKMNI 127

Query: 240 FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWR-----TTPDAKVLTAIALY 294
            + +    + +            D  E +     P   +          +A+ ++A+ L 
Sbjct: 128 VVAQDLYPESLE----------GDEPEPLPQVRWPLAHMMDLLEDPDFNEARNVSALFLV 177

Query: 295 EMASKEE 301
               K +
Sbjct: 178 REWLKGQ 184

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]} Length = 189

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

 Score = 49.3 bits (117), Expect = 8e-08
 Identities = 34/165 (20%), Positives = 52/165 (31%), Gaps = 33/165 (20%)

Query: 140 VFARGPAVAVLILLDSEGETYAILTEQVRVPT-----GRVILELPAGMLDDDKGDFVGTA 194
           V+ RG    +L+    +     +L  Q RV T         L      L D+    V   
Sbjct: 39  VYDRGNGATILLYNTKKKT--VVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEV-CI 95

Query: 195 VREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQL 254
            +E  EETG ++     +            + + S GG  E I  F+             
Sbjct: 96  RKEAIEETGYEVGEVRKL-----------FELYMSPGGVTELIHFFIAE-------YSDN 137

Query: 255 QGKETGLRDHGELIKVRVVPYRELWR-----TTPDAKVLTAIALY 294
           Q    G     E I+V  +P+ +           D K  T + L 
Sbjct: 138 QRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDGK--TVLLLN 180

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 26/164 (15%), Positives = 58/164 (35%), Gaps = 27/164 (16%)

Query: 147 VAVLILLDSEGETYAILTEQVRVPTGRVIL---ELPAGMLDDDKGDFVGTAVREVEEETG 203
            A ++LL+  G+   +L ++  +P          +P+G ++D + +    AVRE  EETG
Sbjct: 14  AAGVVLLNERGDI--LLVQEKGIPGHPEKAGLWHIPSGAVEDGE-NPQDAAVREACEETG 70

Query: 204 IQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRD 263
           ++++    +      +P           G      ++L      + +             
Sbjct: 71  LRVRPVKFLGAYLGRFPD----------GVLILRHVWLAEPEPGQTLAPA---------F 111

Query: 264 HGELIKVRVVPYREL--WRTTPDAKVLTAIALYEMASKEELLPS 305
             E+ +   V   +          ++      Y  A +E+  P+
Sbjct: 112 TDEIAEASFVSREDFAQLYAAGQIRMYQTKLFYADALREKGFPA 155

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 30/159 (18%), Positives = 52/159 (32%), Gaps = 37/159 (23%)

Query: 143 RGPAVAVLILLDSEGETYAILTEQVRVPTGRVIL---ELPAGMLDDDKGDFVGTAVREVE 199
           R  A  +++  D  G+       Q R  T   +    +  AG +       + +A RE E
Sbjct: 29  RHRATYIVVH-DGMGKILV----QRRTETKDFLPGMLDATAGGVVQADEQLLESARREAE 83

Query: 200 EETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKET 259
           EE GI        +   F +    C+ +             L+         +       
Sbjct: 84  EELGI--AGVPFAEHGQFYFEDKNCRVW-----------GALFSCVSHGPFAL------- 123

Query: 260 GLRDHGELIKVRVVPYRELWRT----TPDAKVLTAIALY 294
                 E+ +V  +   E+       TPD+  L A+AL+
Sbjct: 124 ---QEDEVSEVCWLTPEEITARCDEFTPDS--LKALALW 157

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 4e-04
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQL 206
            A  +   SE E   +L    R P  R    +P G ++ ++ +    AVREV EE G++ 
Sbjct: 13  RAACLCFRSESEEEVLLVSSSRHP-DR--WIVPGGGMEPEE-EPSVAAVREVCEEAGVKG 68

Query: 207 KLEDMIDLTAFLYPSTGCKFFP 228
            L  ++ +            + 
Sbjct: 69  TLGRLVGIFENQERKHRTYVYV 90

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 6e-04
 Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 4/91 (4%)

Query: 145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGI 204
             +  L+L+        +L    +   G        G + + +      A RE++EE+G+
Sbjct: 4   SRLYTLVLVLQPQR---VLLGMKKRGFGAGRWNGFGGKVQEGE-TIEDGARRELQEESGL 59

Query: 205 QLKLEDMIDLTAFLYPSTGCKFFPSAGGCDE 235
            +     +    F +              D 
Sbjct: 60  TVDALHKVGQIVFEFVGEPELMDVHVFCTDS 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	307
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.97
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.97
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.96
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.96
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.93
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.74
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.74
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.72
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.7
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.68
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.67
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.67
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.67
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.66
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.64
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.62
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.62
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.62
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.61
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.6
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.57
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.57
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.57
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.56
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.56
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.49
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.22
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.13
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.05
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	98.77

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=5.5e-30  Score=225.47  Aligned_cols=173  Identities=21%  Similarity=0.216  Sum_probs=132.5

Q ss_pred             EEeeEeeecccccEEEEEEEEEEcCCCcEEeEEEEEeCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecC-C
Q 021805          107 LIQGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLD-D  185 (307)
Q Consensus       107 ~i~~~~~fg~r~~~i~~~~d~~~~~~G~~~~~~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD-~  185 (307)
                      ++++..+|.  +.|+++..+.+..+||....+.++.++++|+|+++. ++  +++||++|+|+|.+.+.|+||||++| +
T Consensus         3 ~l~s~~v~~--~~~~~v~~d~v~~pdG~~~~~~~v~~~~~V~vl~~~-~~--~~ilLvrq~R~~~~~~~welPaG~ie~~   77 (202)
T d1mqea_           3 TISSETLHT--GAIFALRRDQVRMPGGGIVTREVVEHFGAVAIVAMD-DN--GNIPMVYQYRHTYGRRLWELPAGLLDVA   77 (202)
T ss_dssp             EEEEEEEEE--CSSEEEEEEEEC-----CEEEEEEEECCEEEEEECC-TT--SEEEEEEEEETTTTEEEEECCEEECCST
T ss_pred             EccEEEEEE--CCEEEEEEEEEECCCCCEEEEEEEEcCCeEEEEEEC-CC--CEEEEEEecccccCceEEeccccccccC
Confidence            456666776  679999999999999999999999999999999873 23  47999999999999999999999999 7


Q ss_pred             CCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCC
Q 021805          186 DKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHG  265 (307)
Q Consensus       186 g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~  265 (307)
                      | |++++||+||++||||+.+  ..+..++.         +++++|.+++.+++|++.......       . ....+++
T Consensus        78 g-E~~~~aA~REl~EETG~~~--~~~~~l~~---------~~~~~g~~~~~~~~fla~~~~~~~-------~-~~~~~ee  137 (202)
T d1mqea_          78 G-EPPHLTAARELREEVGLQA--STWQVLVD---------LDTAPGFSDESVRVYLATGLREVG-------R-PEAHHEE  137 (202)
T ss_dssp             T-CCHHHHHHHHHHHHHCEEE--EEEEEEEE---------ECSCTTTBCCCEEEEEEEEEEECC-------C--------
T ss_pred             C-CCHHHHHHHHHhhcccccc--ccceEeee---------eeccCccCCcEEEEEEEEeccccC-------C-CCCCCcc
Confidence            7 9999999999999999988  46777764         899999999999999987543321       1 1123456


Q ss_pred             ceEEEEEEchhhHhhccC-----ChhHHHHHHHHHHHHhcCCCCC
Q 021805          266 ELIKVRVVPYRELWRTTP-----DAKVLTAIALYEMASKEELLPS  305 (307)
Q Consensus       266 E~i~v~wvpleel~~~i~-----D~ktl~al~L~~~~~~~g~lp~  305 (307)
                      |.++++|+|++|+.+++.     |+++++|+.+++. +..|.+++
T Consensus       138 e~i~v~w~~~~e~~~~i~~G~I~d~~ti~al~~~~~-~~~~~~~~  181 (202)
T d1mqea_         138 ADMTMGWYPIAEAARRVLRGEIVNSIAIAGVLAVHA-VTTGFAQP  181 (202)
T ss_dssp             ---CEEEEEHHHHHHHHTTTSCCCHHHHHHHHHHHH-HHTTSCCC
T ss_pred             ceEEEEEEEHHHHHHHHHcCCCCcHHHHHHHHHHHH-HhcCCCCC
Confidence            678999999999999875     8999999866654 56677664

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=5.6e-30  Score=226.53  Aligned_cols=148  Identities=26%  Similarity=0.360  Sum_probs=117.6

Q ss_pred             EEcCCCcE---EeEEEEEeCCEEEEEEEEecCCceEEEEEEeeecCC-----CCeEEEccceecCCCCCCHHHHHHHHHH
Q 021805          128 FCKETGQK---VPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPT-----GRVILELPAGMLDDDKGDFVGTAVREVE  199 (307)
Q Consensus       128 ~~~~~G~~---~~~~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~-----g~~~wElPaG~vD~g~Et~~~AA~REl~  199 (307)
                      +..+||..   +.++++.++++|+|+++.  +.+++++|++|+|+|.     +.++||+|||++|+| |++++||+|||+
T Consensus        38 ~~~~dG~~s~~~~rev~~~~~~v~vl~~~--~~~~~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~g-E~p~~aA~REL~  114 (209)
T d1g0sa_          38 HRLFNGQMSHEVRREIFERGHAAVLLPFD--PVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEG-ESVEDVARREAI  114 (209)
T ss_dssp             EBCTTSCBCCCEEEEEEECCCEEEEEEEE--TTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTT-CCHHHHHHHHHH
T ss_pred             EECCCCCcccEEEEEEEecCCEEEEEEEE--ecCCeEEEEEEEeccccccCCCceEEeeceeecCCC-cCHHHHHHHHHH
Confidence            35678854   678899999999999884  3345799999999987     567999999999998 999999999999


Q ss_pred             HHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHh
Q 021805          200 EETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELW  279 (307)
Q Consensus       200 EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~  279 (307)
                      ||||+++  ..+..++.         +|++||.+++.+++|+++......      ....+..+++|.|+++|+|++|+.
T Consensus       115 EEtG~~~--~~l~~l~~---------~~~spg~~~e~~~~f~a~~~~~~~------~~~~~~~de~E~iev~~v~~~e~~  177 (209)
T d1g0sa_         115 EEAGLIV--KRTKPVLS---------FLASPGGTSERSSIMVGEVDATTA------SGIHGLADENEDIRVHVVSREQAY  177 (209)
T ss_dssp             HHHCCCC--CCEEEEEE---------EESCTTTBCCEEEEEEEECCGGGC------C--------CCSCEEEEEEHHHHH
T ss_pred             hhhcccc--cceeeccc---------cccCCcccCCceEEEEEEEecccc------cCCCCCCCCCceeEEEEEeHHHHH
Confidence            9999998  47888875         899999999999999987543221      122345588899999999999999


Q ss_pred             hccC-----ChhHHHHHHHHH
Q 021805          280 RTTP-----DAKVLTAIALYE  295 (307)
Q Consensus       280 ~~i~-----D~ktl~al~L~~  295 (307)
                      +++.     |++|++|+.+++
T Consensus       178 ~~i~~g~I~da~ti~al~~~~  198 (209)
T d1g0sa_         178 QWVEEGKIDNAASVIALQWLQ  198 (209)
T ss_dssp             HHHHTTSSCBHHHHHHHHHHH
T ss_pred             HHHHcCCCCcHHHHHHHHHHH
Confidence            8875     788998875443

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=4e-29  Score=217.72  Aligned_cols=142  Identities=24%  Similarity=0.352  Sum_probs=111.1

Q ss_pred             EcCCCcE--EeEEEEEeCCEEEEEEEEecCCceEEEEEEeeecCC------CCeEEEccceecCCCCCCHHHHHHHHHHH
Q 021805          129 CKETGQK--VPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPT------GRVILELPAGMLDDDKGDFVGTAVREVEE  200 (307)
Q Consensus       129 ~~~~G~~--~~~~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~------g~~~wElPaG~vD~g~Et~~~AA~REl~E  200 (307)
                      .++||..  ..+.++.|+++|+|+++.  ..++++||++|||+|.      ..+.||+|||++|+  |++++||+||++|
T Consensus        26 ~~~dG~~~~~~rev~~~~~aV~Vl~~~--~~~~~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d~--e~p~~aA~REL~E  101 (189)
T d1viua_          26 TRKDGEVIRHKREVYDRGNGATILLYN--TKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDN--DEPEVCIRKEAIE  101 (189)
T ss_dssp             CCSSSCCEEEEEEEEECCCEEEEEEEE--TTTTEEEEEEEECHHHHTTTCSSCEEEECEEEECTT--SCHHHHHHHHHHH
T ss_pred             ECCCCCEEEEEEEEEecCCEEEEEEEE--cCCCEEEEEEeeccceeeccCCCcceecCcEEecCC--CCHHHHHHHHHHH
Confidence            5678875  457899999999999873  3345799999999986      56799999999984  6789999999999


Q ss_pred             HhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhh
Q 021805          201 ETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWR  280 (307)
Q Consensus       201 ETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~  280 (307)
                      |||+.+  .++..++.         +|++||.+++.+++|+++......       ...+..+++|.|++.|+|++|+.+
T Consensus       102 EtG~~~--~~~~~lg~---------~~~spG~~~e~~~~f~a~~~~~~~-------~~~~~~~e~E~i~v~~~~~~e~~~  163 (189)
T d1viua_         102 ETGYEV--GEVRKLFE---------LYMSPGGVTELIHFFIAEYSDNQR-------ANAGGGVEDEDIEVLELPFSQALE  163 (189)
T ss_dssp             HHSCCC--CCCEEEEE---------EESCTTTBCCEEEEEEEECCTTCC----------------CCEEEEEEEHHHHHH
T ss_pred             hhCCcc--eEEEEcce---------eecCccccCceEEEEEEEECCccc-------ccCCCCCCCccEEEEEEEHHHHHH
Confidence            999998  47888875         899999999999999987542211       112234678999999999999999


Q ss_pred             ccC-----ChhHHHHHH
Q 021805          281 TTP-----DAKVLTAIA  292 (307)
Q Consensus       281 ~i~-----D~ktl~al~  292 (307)
                      ++.     |++|++|++
T Consensus       164 ~i~~g~i~da~ti~al~  180 (189)
T d1viua_         164 MIKTGEIRDGKTVLLLN  180 (189)
T ss_dssp             HHHHTSCCBHHHHHHHH
T ss_pred             HHHcCCCCcHHHHHHHH
Confidence            864     888888763

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=3.6e-28  Score=211.02  Aligned_cols=165  Identities=15%  Similarity=0.121  Sum_probs=131.1

Q ss_pred             eeEeeecccccEEEEEEEEEEcCCCcEEeEEEEEeCC--EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCC
Q 021805          109 QGVDMFGKRIGFLKFKADIFCKETGQKVPGIVFARGP--AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDD  186 (307)
Q Consensus       109 ~~~~~fg~r~~~i~~~~d~~~~~~G~~~~~~v~~r~~--aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g  186 (307)
                      .+..+|.  +.|+++..+.+..+||....+.++.+++  +|+|++.  .++  ++||++|||+|.+.+.|+||||++|+|
T Consensus        13 ~~~~v~~--~~~f~v~~~~v~~p~G~~~~~~~~~~~~~~~v~vi~~--~~~--~vlLvrq~R~~~~~~~~elP~G~ie~g   86 (186)
T d1vhza_          13 NVETVAR--SRLFTVESVDLEFSNGVRRVYERMRPTNREAVMIVPI--VDD--HLILIREYAVGTESYELGFSKGLIDPG   86 (186)
T ss_dssp             EEEEEEE--CSSCEEEEEEEECTTSCEEEEEEECCCCCCEEEEEEE--ETT--EEEEEEEEETTTTEEEEECEEEECCTT
T ss_pred             eeEEEEe--CCEEEEEEEEEEcCCCCEEEEEEEEeCCCcEEEEEEc--cCC--EEEEEEeeecCCCceEeecccccCCCC
Confidence            3444454  4688899999999999987777766544  4444443  344  599999999999999999999999998


Q ss_pred             CCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCc
Q 021805          187 KGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGE  266 (307)
Q Consensus       187 ~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E  266 (307)
                       |++++||+||++||||+++.  ++..++.         +|++||.+++.+++|++......          ....+++|
T Consensus        87 -E~p~~aA~REl~EEtG~~~~--~~~~l~~---------~~~~~g~~~~~~~~~~a~~~~~~----------~~~~de~E  144 (186)
T d1vhza_          87 -ESVYEAANRELKEEVGFGAN--DLTFLKK---------LSMAPSYFSSKMNIVVAQDLYPE----------SLEGDEPE  144 (186)
T ss_dssp             -CCHHHHHHHHHHHHHSEEEE--EEEEEEE---------EECCTTTCCCEEEEEEEEEEEEC----------CCCCCCSS
T ss_pred             -cCHHHHHHHHHHHHhccccc--cceecce---------eeccccccceEEEEEEEEecccc----------cCCCCCCc
Confidence             99999999999999999884  6777764         89999999999999998754321          11347889


Q ss_pred             eEEEEEEchhhHhhccC-----ChhHHHHHHHHH-HHHhcC
Q 021805          267 LIKVRVVPYRELWRTTP-----DAKVLTAIALYE-MASKEE  301 (307)
Q Consensus       267 ~i~v~wvpleel~~~i~-----D~ktl~al~L~~-~~~~~g  301 (307)
                      .+++.|+|++|+.+++.     |+++++|+.+++ .++..|
T Consensus       145 ~~~~~~~~~~e~~~~i~~g~i~da~ti~al~~~~~~L~~~~  185 (186)
T d1vhza_         145 PLPQVRWPLAHMMDLLEDPDFNEARNVSALFLVREWLKGQG  185 (186)
T ss_dssp             CCCEEEEEGGGGGGGGGCTTTCBHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEEEEeHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHcC
Confidence            99999999999999875     788998887665 566655

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=9e-26  Score=190.89  Aligned_cols=131  Identities=30%  Similarity=0.410  Sum_probs=101.2

Q ss_pred             EEEEEeCCEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeecccc
Q 021805          138 GIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAF  217 (307)
Q Consensus       138 ~~v~~r~~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l  217 (307)
                      +.++.++++|+|+++  +++  ++||++|+|+|.+.+.||||||.+|+| |++.+||+||++||||+.+   ++..++. 
T Consensus        18 ~~~v~~~~aV~vl~~--~~~--~vlLv~q~R~~~~~~~~elP~G~ve~g-E~~~~aA~REl~EEtG~~~---~~~~l~~-   88 (158)
T d1v8ya_          18 YEIVEHKPAVAVIAL--REG--RMLFVRQMRPAVGLAPLEIPAGLIEPG-EDPLEAARRELAEQTGLSG---DLTYLFS-   88 (158)
T ss_dssp             EEEEEECCEEEEEEE--ETT--EEEEEECCBTTTTBCCBBCSEEECCTT-CCHHHHHHHHHHHHHSEEE---EEEEEEE-
T ss_pred             EEEEecCCEEEEEEE--ECC--EEEEEEeeecCCCCceEecchhhcccc-CCHHHHHHHHHHhhcCCcc---eeeeecc-
Confidence            467788999999986  345  599999999999999999999999998 9999999999999999976   4666664 


Q ss_pred             ccCCCCceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC-----ChhH-HHHH
Q 021805          218 LYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP-----DAKV-LTAI  291 (307)
Q Consensus       218 ~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~-----D~kt-l~al  291 (307)
                              +|++||.+++.+++|++......          ....+++|.+++.|++++|+.+++.     |+++ ++++
T Consensus        89 --------~~~~~g~~~~~~~~f~a~~~~~~----------~~~~d~~E~~ev~w~~~~e~~~~i~~g~i~~~~t~~~~l  150 (158)
T d1v8ya_          89 --------YFVSPGFTDEKTHVFLAENLKEV----------EAHPDEDEAIEVVWMRPEEALERHQRGEVEFSATGLVGV  150 (158)
T ss_dssp             --------EESCTTTBCCEEEEEEEEEEEEC----------C--------CEEEEECHHHHHHHHHTTSCCBCHHHHHHH
T ss_pred             --------eecCCCcceEEEEEEEEcccccc----------ccCCCCCeeEEEEEEEHHHHHHHHHCCCCcccHHHHHHH
Confidence                    89999999999999998754321          1235778999999999999999864     4555 4555


Q ss_pred             HHHH
Q 021805          292 ALYE  295 (307)
Q Consensus       292 ~L~~  295 (307)
                      .+|.
T Consensus       151 l~~~  154 (158)
T d1v8ya_         151 LYYH  154 (158)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.74  E-value=1.2e-17  Score=138.53  Aligned_cols=134  Identities=18%  Similarity=0.224  Sum_probs=87.1

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCC---CCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCC
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPT---GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPST  222 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~---g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~  222 (307)
                      +|+++++ ++++  +|||++|.+.+.   ..+.|++|||++|+| |++.+||+||++||||+++..  +..++.      
T Consensus        14 a~~~vi~-~~~g--~iLl~~r~~~~~~~~~~g~W~~PgG~ve~g-E~~~~aa~RE~~EEtGl~~~~--~~~i~~------   81 (158)
T d1sjya_          14 AAGVVLL-NERG--DILLVQEKGIPGHPEKAGLWHIPSGAVEDG-ENPQDAAVREACEETGLRVRP--VKFLGA------   81 (158)
T ss_dssp             EEEEEEB-CTTC--CEEEEEESCC----CCCCCEECSEEECCTT-SCHHHHHHHHHHHHHSCCEEE--EEEEEE------
T ss_pred             EEEEEEE-eCCC--EEEEEEEecCCCCCCCCCcEECCceecCCC-CCHHHHHHHHHHHHhCcccee--eEEEEE------
Confidence            4555543 3334  599998876543   235799999999998 999999999999999999853  334432      


Q ss_pred             CceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChh---HHHHHHHHHHHHh
Q 021805          223 GCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAK---VLTAIALYEMASK  299 (307)
Q Consensus       223 ~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~k---tl~al~L~~~~~~  299 (307)
                        ..+..+.......++|++......         ..-...++|..+++|++++|+.+++..++   ....+.+...+++
T Consensus        82 --~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~E~~~~~w~~~~el~~l~~~~~~~~~~~~~~~~d~~~~  150 (158)
T d1sjya_          82 --YLGRFPDGVLILRHVWLAEPEPGQ---------TLAPAFTDEIAEASFVSREDFAQLYAAGQIRMYQTKLFYADALRE  150 (158)
T ss_dssp             --EEEECTTSCEEEEEEEEEEECSSC---------CCCCCCCSSEEEEEEECHHHHHHHHHTTCBSCTHHHHHHHHHHHH
T ss_pred             --EEEECCCCCEEEEEEEEEEEcCCc---------ccCCCCCcceEEEEEEEHHHHhhhhhCCcchhHhHHHHHHHHHHh
Confidence              134445555566677777654321         11122457899999999999988764221   2233445556666


Q ss_pred             cCC
Q 021805          300 EEL  302 (307)
Q Consensus       300 ~g~  302 (307)
                      .|.
T Consensus       151 ~g~  153 (158)
T d1sjya_         151 KGF  153 (158)
T ss_dssp             HTC
T ss_pred             CCC
Confidence            664

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.74  E-value=7.3e-18  Score=137.94  Aligned_cols=108  Identities=19%  Similarity=0.175  Sum_probs=74.2

Q ss_pred             EecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCc
Q 021805          153 LDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGG  232 (307)
Q Consensus       153 l~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~  232 (307)
                      +.+++  ++||+++.+.+. ...|++|||++|.| |++.+||+||++||||+++....+..+..        ..++.. .
T Consensus        10 i~~~~--k~Llv~r~~~~~-~~~w~~PgG~ve~g-Et~~~aa~RE~~EEtGl~~~~~~~~~~~~--------~~~~~~-~   76 (146)
T d2b0va1          10 IEQDD--KYLLVEEIPRGT-AIKLNQPAGHLEPG-ESIIQACSREVLEETGHSFLPEVLTGIYH--------WTCASN-G   76 (146)
T ss_dssp             CEETT--EEEEEEECSSSS-CCEEECSEEECCTT-SCHHHHHHHHHHHHHSEEEEEEEEEEEEE--------EEETTT-T
T ss_pred             EEeCC--EEEEEEEecCCC-CCEEECCeeeECCC-CCHHHHHHHHHHHhheeecccceEEEEEE--------EecCCC-C
Confidence            33455  599998887763 45899999999998 99999999999999999986544433321        122222 3


Q ss_pred             cceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          233 CDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       233 ~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      .....++|.+......          .....++|..+++|++++|+.+...
T Consensus        77 ~~~~~~~~~~~~~~~~----------~~~~~~~E~~~~~W~~~~el~~~~~  117 (146)
T d2b0va1          77 TTYLRFTFSGQVVSFD----------PDRKLDTGIVRAAWFSIDEIRAKQA  117 (146)
T ss_dssp             EEEEEEEEEEEEEEEC----------TTSCCCTTEEEEEEEEHHHHHHTGG
T ss_pred             eEEEEEEEEEEeecCC----------CCCCCCcceeEEEEeeHHHHhhCcc
Confidence            3334444555443221          1123567899999999999987654

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.72  E-value=1.1e-17  Score=138.83  Aligned_cols=132  Identities=20%  Similarity=0.102  Sum_probs=85.7

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      +|.++++..++++.+|||+++.+.|. .+.|.+|||++|.| |++.+||+||++||||+++.  .+..++.+.      .
T Consensus        12 ~Vd~Vi~~~~~~~~~vLLv~R~~~p~-~g~W~lPGG~ie~~-Es~~~aa~REl~EEtGl~~~--~~~~~~~~~------~   81 (147)
T d2fb1a2          12 GIDCIIFGFNEGEISLLLLKRNFEPA-MGEWSLMGGFVQKD-ESVDDAAKRVLAELTGLENV--YMEQVGAFG------A   81 (147)
T ss_dssp             EEEEEEEEEETTEEEEEEEECSSSSS-TTCEECEEEECCTT-SCHHHHHHHHHHHHHCCCSC--EEEEEEEEC------C
T ss_pred             EEEEEEEEEeCCcCEEEEEEccCCCC-CCcEeCcEeeecCC-CCHHHHHHHHHHHHhCCccc--ceeeeeEec------C
Confidence            44455544456667899998766553 34799999999998 99999999999999999874  444554210      1


Q ss_pred             eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhHHHHHHHHHHHHh
Q 021805          226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAIALYEMASK  299 (307)
Q Consensus       226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ktl~al~L~~~~~~  299 (307)
                      .+.+++. ......|++.......           ....+|..+++|++++++.++.+|.+.+...++-++.++
T Consensus        82 ~~~~~~~-~~v~~~~~~~~~~~~~-----------~~~~~e~~~~~W~~~~~lp~lafDH~~ii~~a~~~lr~k  143 (147)
T d2fb1a2          82 IDRDPGE-RVVSIAYYALININEY-----------DRELVQKHNAYWVNINELPALIFDHPEMVDKAREMMKQK  143 (147)
T ss_dssp             TTSSSSS-CEEEEEEEEECCTTSS-----------CHHHHHHTTEEEEETTSCCCBSTTHHHHHHHHHHHHHHH
T ss_pred             CcccCCC-ceEEEEEEEEecCCcc-----------cCCCcchhheEEecHHhchhcccCHHHHHHHHHHHHHHH
Confidence            1222322 2222335544322110           112334556899999999999999887776666655544

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=7.9e-17  Score=129.56  Aligned_cols=106  Identities=20%  Similarity=0.272  Sum_probs=72.9

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      +|+++++ ++++  ++||+++.     ...|++|||++|.| |++.+||+||++||||+++..  +..++.        .
T Consensus         4 ~agavv~-~~~~--~vLl~~~~-----~g~w~~PgG~ve~g-Et~~~aa~RE~~EEtGi~~~~--~~~~~~--------~   64 (126)
T d1vcda1           4 GAGGVVF-NAKR--EVLLLRDR-----MGFWVFPKGHPEPG-ESLEEAAVREVWEETGVRAEV--LLPLYP--------T   64 (126)
T ss_dssp             EEEEEEE-CTTS--CEEEEECT-----TSCEECCEECCCTT-CCHHHHHHHHHHHHHCCEEEE--EEEEEE--------E
T ss_pred             EEEEEEE-ECCC--EEEEEEcC-----CCCEECCccccCCC-CCHHHHHHHHHHHHcCCeeEE--EEEEee--------e
Confidence            3455544 2333  58776542     13699999999998 999999999999999999853  334432        2


Q ss_pred             eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      .|..+......+++|++.....             ....+|..+++|++++++.+++.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~e~~~~~W~~~~e~~~~~~  109 (126)
T d1vcda1          65 RYVNPKGVEREVHWFLMRGEGA-------------PRLEEGMTGAGWFSPEEARALLA  109 (126)
T ss_dssp             EEECTTSCEEEEEEEEEEEESC-------------CCCCTTCCEEEEECHHHHHHHBC
T ss_pred             eeccCCCeEEEEEEEEEEEcCC-------------CCCCccceEEEEEEHHHHhhccC
Confidence            4555555555666676654211             12345777899999999999876

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.68  E-value=2e-16  Score=131.46  Aligned_cols=105  Identities=15%  Similarity=0.207  Sum_probs=68.9

Q ss_pred             ceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEE
Q 021805          158 ETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEI  237 (307)
Q Consensus       158 ~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i  237 (307)
                      +.++||++|.........|++|||++|+| |++.+||+||++||||+++...++..+.          .++........+
T Consensus        20 ~~~lLl~~R~~~~~~~~~w~~PGG~ve~g-Es~~~aa~RE~~EEtGl~v~~~~~~~~~----------~~~~~~~~~~~~   88 (155)
T d2b06a1          20 TQRVVMQYRAPENNRWSGYAFPGGHVEND-EAFAESVIREIYEETGLTIQNPQLVGIK----------NWPLDTGGRYIV   88 (155)
T ss_dssp             TTEEEEEEEC-----CCEEECCCCBCCTT-SCHHHHHHHHHHHHHSEEEESCEEEEEE----------EEECTTSCEEEE
T ss_pred             CCEEEEEEECCCCCCCCcEECceeEEcCC-CCHHHHHHHHHHHhcCeeEeeeEEEEEE----------EeecCCCCeEEE
Confidence            34788876654333324799999999998 9999999999999999999654444433          233333334444


Q ss_pred             EEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChh
Q 021805          238 SLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAK  286 (307)
Q Consensus       238 ~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~k  286 (307)
                      .+|.+...         .+    .....|..+++|++++++.++.....
T Consensus        89 ~~~~~~~~---------~~----~~~~~e~~~~~W~~~~el~~l~~~~~  124 (155)
T d2b06a1          89 ICYKATEF---------SG----TLQSSEEGEVSWVQKDQIPNLNLAYD  124 (155)
T ss_dssp             EEEEECEE---------EE----CCCCBTTBEEEEEEGGGGGGSCBCTT
T ss_pred             EEEEEEec---------CC----ccCCCchheEEEEEHHHhccCCCCch
Confidence            55655321         12    22455667899999999988765333

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.67  E-value=3.8e-16  Score=125.87  Aligned_cols=116  Identities=17%  Similarity=0.168  Sum_probs=74.0

Q ss_pred             EEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 021805          146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK  225 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~  225 (307)
                      +++++++...+++.++||+++.+.+   ..|.+|||++|+| |++.+||+||++||||+++..........       ..
T Consensus         4 aag~vv~~~~~~~~~~Ll~~r~~~~---g~W~~PgG~ie~g-E~~~~aa~RE~~EEtGl~~~~~~~~~~~~-------~~   72 (137)
T d1ktga_           4 AAGLVIYRKLAGKIEFLLLQASYPP---HHWTPPKGHVDPG-EDEWQAAIRETKEEANITKEQLTIHEDCH-------ET   72 (137)
T ss_dssp             EEEEEEEEEETTEEEEEEEEESSTT---CCEESSEEECCTT-CCHHHHHHHHHHHHHCCCGGGEEEEEEEE-------EE
T ss_pred             EEEEEEEEEcCCCEEEEEEEEcCCC---CcEeCcccccccC-CCHHHHHHHHHHHHhCCcceeeeeeeeee-------ee
Confidence            4556655545666678887654332   4699999999998 99999999999999999985322222111       01


Q ss_pred             eecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          226 FFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       226 ~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      .+.........+.+|++.....        .   ......|..++.|++++++.+++.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~E~~~~~W~~~~e~~~~~~  119 (137)
T d1ktga_          73 LFYEAKGKPKSVKYWLAKLNNP--------D---DVQLSHEHQNWKWCELEDAIKIAD  119 (137)
T ss_dssp             EEEEETTEEEEEEEEEEEECSC--------C---CCCCCTTEEEEEEECHHHHHHHHC
T ss_pred             eecCCCcceEEEEEEEEEecCC--------C---CcCCCcceEEEEEEEHHHHHHhcC
Confidence            1222222333444454443211        1   122456889999999999998875

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1e-16  Score=130.09  Aligned_cols=99  Identities=22%  Similarity=0.283  Sum_probs=71.3

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEE
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISL  239 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~l  239 (307)
                      ++||++|.+.+.  ..|++|||++|+| |++++||+||++||||+++.  ....++.          +..+ ..+...++
T Consensus        15 ~vLL~~~~~~~~--g~w~lpGG~ve~G-Et~~~aa~REl~EEtG~~~~--~~~~~~~----------~~~~-~~~~~~~~   78 (131)
T d1vk6a2          15 SILLAQHTRHRN--GVHTVLAGFVEVG-ETLEQAVAREVMEESGIKVK--NLRYVTS----------QPWP-FPQSLMTA   78 (131)
T ss_dssp             EEEEEEETTTCS--SCCBCEEEECCTT-CCHHHHHHHHHHHHHCCEEE--EEEEEEE----------EEEE-TTEEEEEE
T ss_pred             EEEEEEeccCCC--CCEecccCCCcCC-CcHHHHHHHHHHHHhCCccc--ceeEEEE----------eccC-cCceEEEE
Confidence            699998876653  3699999999998 99999999999999999985  3333331          2211 22445566


Q ss_pred             EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCCh
Q 021805          240 FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDA  285 (307)
Q Consensus       240 f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~  285 (307)
                      |++....         +..  ..++.|..+++|++++|+..+...+
T Consensus        79 f~~~~~~---------~~~--~~~~~E~~~~~W~~~~el~~l~~~~  113 (131)
T d1vk6a2          79 FMAEYDS---------GDI--VIDPKELLEANWYRYDDLPLLPPPG  113 (131)
T ss_dssp             EEEEEEE---------CCC--CCCTTTEEEEEEEETTSCCSCCCTT
T ss_pred             EEEEEcC---------Ccc--cCCCccEEEEEEEcHHHHhhCCCCh
Confidence            6665432         211  2467899999999999998876643

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.9e-17  Score=130.92  Aligned_cols=115  Identities=19%  Similarity=0.179  Sum_probs=73.3

Q ss_pred             EEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCcee
Q 021805          147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKF  226 (307)
Q Consensus       147 VaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~  226 (307)
                      |+++++. .++++.+||+++.+.+   ..|++|||++|+| |++.+||+||++||||+.+...++...           +
T Consensus        14 a~~vv~~-~~~~~~~lL~~~~~~~---~~W~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~~~~~~~~~-----------~   77 (135)
T d2fvva1          14 AACLCFR-SESEEEVLLVSSSRHP---DRWIVPGGGMEPE-EEPSVAAVREVCEEAGVKGTLGRLVGI-----------F   77 (135)
T ss_dssp             EEEEEES-STTCCEEEEEECSSCT---TSEECSEEECCTT-CCHHHHHHHHHHHHHCEEEEEEEEEEE-----------E
T ss_pred             EEEEEEE-ecCCCEEEEEEEeCCC---CcEECCccccCCC-CCHHHHHHHHHHHHhCCcceeeEEEEE-----------E
Confidence            4444443 3444567777766643   3699999999998 999999999999999999854333222           2


Q ss_pred             ecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhHH
Q 021805          227 FPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVL  288 (307)
Q Consensus       227 ~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ktl  288 (307)
                      ..........++.|.+.......           ....+|..+++|++++|+.+++...+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~e~~~~~W~~~~e~~~~l~~~~p~  128 (135)
T d2fvva1          78 ENQERKHRTYVYVLIVTEVLEDW-----------EDSVNIGRKREWFKIEDAIKVLQYHKPV  128 (135)
T ss_dssp             EETTTTEEEEEEEEEEEEECSSC-----------HHHHHHCCCEEEEEHHHHHHHHTTTCHH
T ss_pred             eeccCCccEEEEEEEEEeecCCC-----------CCCCCceeEEEEEEHHHHHHHHhcCCHH
Confidence            22222333344444433322110           1133466688999999999998865543

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.66  E-value=6.6e-17  Score=133.86  Aligned_cols=114  Identities=21%  Similarity=0.262  Sum_probs=68.9

Q ss_pred             CEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCc
Q 021805          145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGC  224 (307)
Q Consensus       145 ~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~  224 (307)
                      +.++++++  +.+.++|||+++++.   ...|.||||++|.| |++.+||+||++||||+++..  +.....        
T Consensus         3 ~v~Gaii~--~~~~~kvLLvk~~~~---~~~W~lPgG~ie~g-Es~~~aa~RE~~EEtGi~~~~--~~~~~~--------   66 (151)
T d2a6ta2           3 PVRGAIML--DMSMQQCVLVKGWKA---SSGWGFPKGKIDKD-ESDVDCAIREVYEETGFDCSS--RINPNE--------   66 (151)
T ss_dssp             CEEEEEEB--CSSSSEEEEEEESST---TCCCBCSEEECCTT-CCHHHHHHHHHHHHHCCCCTT--TCCTTC--------
T ss_pred             cEEEEEEE--ECCCCEEEEEEEeCC---CCCEECCcccccCC-CCHHHHHHHHHHHHhCCCcee--eeecce--------
Confidence            44455554  333357999987542   24699999999998 999999999999999998853  222211        


Q ss_pred             eeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCC
Q 021805          225 KFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPD  284 (307)
Q Consensus       225 ~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D  284 (307)
                       ++. ....+..+++|++.......       ... ..+.+|..+++|++++|+..+..+
T Consensus        67 -~~~-~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~Ei~~~~W~~~~el~~~~~~  116 (151)
T d2a6ta2          67 -FID-MTIRGQNVRLYIIPGISLDT-------RFE-SRTRKEISKIEWHNLMDLPTFKKN  116 (151)
T ss_dssp             -EEE-EEETTEEEEEEEECCCCTTC-------CCC-------EEEEEEEEGGGSTTCC--
T ss_pred             -EEe-ecccCceEEEEEEEEeccCC-------ccc-ccCCCccceEEEEEHHHhhhhhhc
Confidence             111 11223445555553322111       111 124578889999999999887653

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=9.6e-16  Score=128.34  Aligned_cols=123  Identities=21%  Similarity=0.264  Sum_probs=81.7

Q ss_pred             EEEEEEEEecCCceEEEEEEeeec-CCCCeEEEcc-ceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCC
Q 021805          146 AVAVLILLDSEGETYAILTEQVRV-PTGRVILELP-AGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG  223 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~-p~g~~~wElP-aG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~  223 (307)
                      +|+|+++ +.+|  ++||.++... ....+.|++| ||++|+| |++.+||+||++||||+++.  .+..++.       
T Consensus        32 ~v~v~v~-~~~g--~vLl~rR~~~~~~~pg~w~~~~GG~ie~g-Es~~~aa~REl~EE~Gi~~~--~~~~~~~-------   98 (161)
T d2fkba1          32 ATYIVVH-DGMG--KILVQRRTETKDFLPGMLDATAGGVVQAD-EQLLESARREAEEELGIAGV--PFAEHGQ-------   98 (161)
T ss_dssp             EEEEEEE-CSSS--CEEEEEECSSCSSSTTCEESSBCCBCBTT-CCHHHHHHHHHHHHHCCBSC--CCEEEEE-------
T ss_pred             EEEEEEE-eCCC--CEEEEEecCcccccccccccccccccccc-CcHHHHHHHHHHHHhCCccc--eeEEEEE-------
Confidence            5666544 3334  5877554221 1123479887 8999998 99999999999999999874  4556653       


Q ss_pred             ceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC--ChhHHHHHHHHH
Q 021805          224 CKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP--DAKVLTAIALYE  295 (307)
Q Consensus       224 ~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~--D~ktl~al~L~~  295 (307)
                        ++...+......++|.+...          ++.  ..+++|..+++|++++|+.+++.  ....+.|+.+|.
T Consensus        99 --~~~~~~~~~~~~~~~~~~~~----------~~~--~~~~~Ev~~~~w~~~~el~~~~~~~~P~~~~al~~~~  158 (161)
T d2fkba1          99 --FYFEDKNCRVWGALFSCVSH----------GPF--ALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWM  158 (161)
T ss_dssp             --EEEEETTEEEEEEEEEEECC----------CCC--CCCTTTEEEEEEECHHHHHTTGGGBCHHHHHHHHHHH
T ss_pred             --EEeecCCcEEEEEEEEEEEC----------CCC--cCChhHeeEEEEEeHHHHhhhhhccCCcHHHHHHHHH
Confidence              22233344555566655331          111  24678999999999999988765  345667776665

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.62  E-value=3.5e-15  Score=129.88  Aligned_cols=122  Identities=17%  Similarity=0.201  Sum_probs=81.8

Q ss_pred             CceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceE
Q 021805          157 GETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEE  236 (307)
Q Consensus       157 g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~  236 (307)
                      ++.+|||+++.+.|.. +.|.||||++|.| |++.+||+||++||||+++....+..+..+..      ...+|.+  ..
T Consensus        52 ~~l~VLLv~R~~~p~~-g~W~lPGG~ve~g-Es~~eaa~REl~EEtGl~~~~~~l~~~~~~~~------~~r~~~~--~~  121 (202)
T d2fmla2          52 DQLKVLLIQRKGHPFR-NSWALPGGFVNRN-ESTEDSVLRETKEETGVVISQENIEQLHSFSR------PDRDPRG--WV  121 (202)
T ss_dssp             TEEEEEEEEECSSSST-TCEECCEEECCTT-SCHHHHHHHHHHHHHCCCCCGGGEEEEEEECC------TTSSTTS--SE
T ss_pred             CeeEEEEEEecCCCCC-CcEECCEEeecCC-CCHHHHhhhhhHhhcCeeeecceeeeeeeccc------CCccccc--eE
Confidence            4458999988766543 4699999999998 99999999999999999987667776653100      1112222  23


Q ss_pred             EEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhh-------------------------ccCChhHHHHH
Q 021805          237 ISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWR-------------------------TTPDAKVLTAI  291 (307)
Q Consensus       237 i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~-------------------------~i~D~ktl~al  291 (307)
                      +.++++. ....+       .   ....+|..++.|++++++..                         +.+|+.-|.+.
T Consensus       122 i~~~~~~-~~~~~-------~---~~~~~e~~~~~Wf~ld~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LaFDH~~Ii~~  190 (202)
T d2fmla2         122 VTVSYLA-FIGEE-------P---LIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLAFDHSEIIIK  190 (202)
T ss_dssp             EEEEEEE-ECCCC-------C---CCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSSSCCSTTHHHHHHH
T ss_pred             EEEEEEE-EeCCC-------C---cCCCcceeeEEEEeHHHCcchhcccchhhhhhhhhhhhccccCCCcccCHHHHHHH
Confidence            4443322 22211       1   23456888999999999864                         33477777777


Q ss_pred             HHHHHHHh
Q 021805          292 ALYEMASK  299 (307)
Q Consensus       292 ~L~~~~~~  299 (307)
                      ++.++..+
T Consensus       191 Al~Rlr~k  198 (202)
T d2fmla2         191 AFNRVVDK  198 (202)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77665544

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=8.1e-16  Score=128.04  Aligned_cols=106  Identities=15%  Similarity=0.152  Sum_probs=67.8

Q ss_pred             EEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecC
Q 021805          150 LILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPS  229 (307)
Q Consensus       150 l~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~s  229 (307)
                      ++++.+++  +|||+++.+.+ +.+.|.+|||++|+| |++.+||+||++||||+++.........          .+..
T Consensus         9 ~v~i~~~~--~vLL~~r~~~~-~~g~W~lPGG~ve~g-Et~~~aa~RE~~EEtGl~~~~~~~~~~~----------~~~~   74 (156)
T d1irya_           9 LVLVLQPQ--RVLLGMKKRGF-GAGRWNGFGGKVQEG-ETIEDGARRELQEESGLTVDALHKVGQI----------VFEF   74 (156)
T ss_dssp             EECEECSS--EEEEEEESSSS-SBTCEECBCCBCCTT-CCHHHHHHHHHHHHHSCCBSCCCEEEEE----------EEEE
T ss_pred             EEEEEECC--EEEEEEecCCC-CCCEEECcEeEecCC-CCHHHHHHHHHHHHHCCcccceEEEEEE----------EEEc
Confidence            33333455  69999887644 445799999999998 9999999999999999998643333221          2222


Q ss_pred             CCccc-eEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805          230 AGGCD-EEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT  282 (307)
Q Consensus       230 pg~~~-e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i  282 (307)
                      ++... ..+++|.+..  .           .|...+.|..+..|++++++...-
T Consensus        75 ~~~~~~~~~~~~~~~~--~-----------~~~~~~~ee~~~~W~~~~~l~~~~  115 (156)
T d1irya_          75 VGEPELMDVHVFCTDS--I-----------QGTPVESDEMRPCWFQLDQIPFKD  115 (156)
T ss_dssp             TTCSCEEEEEEECCCC--B-----------CSCCCCCSSEEEEEEETTCCCSTT
T ss_pred             CCCCEEEEEEEEEEEe--e-----------cCcccCCchhheEEeEHHHCCcCC
Confidence            33222 2233332211  1           122344555788999999997653

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1.5e-16  Score=127.82  Aligned_cols=109  Identities=17%  Similarity=0.104  Sum_probs=70.2

Q ss_pred             EEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCcee
Q 021805          147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKF  226 (307)
Q Consensus       147 VaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~  226 (307)
                      |++.+++++++  ++||+++...+..++.|+||||++|.| |++.+||.||++||||+++....  .+..        ..
T Consensus         6 vav~ii~~~~~--~vLl~~R~~~~~~~g~W~~PgG~ve~g-Es~~~a~~RE~~EE~gl~~~~~~--~~~~--------~~   72 (129)
T d1puna_           6 IAVGIIRNENN--EIFITRRAADAHMANKLEFPGGKIEMG-ETPEQAVVRELQEEVGITPQHFS--LFEK--------LE   72 (129)
T ss_dssp             EEEEECBCTTS--CEEEBCCCSSCSCTTCCBCSCCSCTTT-SCTTHHHHHHHHHTTCSCCCCCC--CSEE--------EE
T ss_pred             EEEEEEEECCC--EEEEEEecCCCCCCCcEECCcceecCC-CchhHHHHHHHHHHhCCccccce--eeeE--------Ee
Confidence            33433343344  588877655444456899999999998 99999999999999999986433  3322        12


Q ss_pred             ecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhcc
Q 021805          227 FPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTT  282 (307)
Q Consensus       227 ~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i  282 (307)
                      |..++ .+..+++|.+...         ++    .....|..+++|++++++.+.-
T Consensus        73 ~~~~~-~~~~~~~~~~~~~---------~~----~~~~~E~~~~~W~~~~el~~~~  114 (129)
T d1puna_          73 YEFPD-RHITLWFWLVERW---------EG----EPWGKEGQPGEWMSLVGLNADD  114 (129)
T ss_dssp             EECSS-EEEEEEEEECCCC---------SS----CCCTTSSSCCEEECGGGCCTTT
T ss_pred             ecccc-cceeEEEEEEeec---------cC----cCCCCccceEEEEEHHHcccCC
Confidence            33332 2344455554321         12    2234566678999999997653

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=3.2e-15  Score=124.13  Aligned_cols=106  Identities=17%  Similarity=0.183  Sum_probs=69.4

Q ss_pred             eEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCC----Cccc
Q 021805          159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSA----GGCD  234 (307)
Q Consensus       159 ~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~sp----g~~~  234 (307)
                      ++|||+++.+.|. ...|.+|||+++.| |++.+||+||++||||+++....+..+...      ...++..    ....
T Consensus        30 ~~vLL~kR~~~~~-~g~W~lPGG~ve~g-Et~~~aa~REl~EEtGl~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  101 (160)
T d1ryaa_          30 GEFLLGKRTNRPA-QGYWFVPGGRVQKD-ETLEAAFERLTMAELGLRLPITAGQFYGVW------QHFYDDNFSGTDFTT  101 (160)
T ss_dssp             SCEEEEEECSSSS-TTSEECCEEECCTT-CCHHHHHHHHHHHHHSSCCCGGGSEEEEEE------EEEESSBTTBSSSCE
T ss_pred             CeEEEEEeCCCCC-CCcEecccccccCC-CcHHHHHHHHHHHHhCceEeeeeeeEEEEE------EEeccccccCCCcce
Confidence            3599988876553 34699999999998 999999999999999999876555554421      1122221    1112


Q ss_pred             eEEEE-EEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          235 EEISL-FLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       235 e~i~l-f~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      ..+.+ |.+.  .....         ....++|..+++|++++|+..+..
T Consensus       102 ~~~~~~~~~~--~~~~~---------~~~~~~E~~e~~W~~~~el~~~~~  140 (160)
T d1ryaa_         102 HYVVLGFRFR--VSEEE---------LLLPDEQHDDYRWLTSDALLASDN  140 (160)
T ss_dssp             EEEEEEEEEE--CCGGG---------CCCCSSSEEEEEEECHHHHHHCTT
T ss_pred             EEEEEEEEEE--ecCCC---------ccCCCcceEEEEEEEHHHhhcCcc
Confidence            22222 3332  22211         123567888999999999987654

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.60  E-value=2.3e-15  Score=123.06  Aligned_cols=90  Identities=16%  Similarity=0.097  Sum_probs=58.0

Q ss_pred             EEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccce--EEEEEEEEEechhHHHH
Q 021805          175 ILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDE--EISLFLYRGRVDKEIIM  252 (307)
Q Consensus       175 ~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e--~i~lf~~~~~~~~~~i~  252 (307)
                      .|+||||++|+| |++.+||+||++||||+++....+.....       ...+...+....  ..++|.+.....     
T Consensus        41 ~w~lPgG~ie~g-Es~~~aa~RE~~EEtGl~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-----  107 (147)
T d2azwa1          41 AYFLPGGEIEGT-ETKEEAIHREVLEELGISVEIGCYLGEAD-------EYFYSNHRQTAYYNPGYFYVANTWRQ-----  107 (147)
T ss_dssp             CEECSEEECCTT-CCHHHHHHHHHHHHHSEEEEEEEEEEEEE-------EEEEETTTTEEEEEEEEEEEEEEEEE-----
T ss_pred             eEECcEeEeCCC-CCHHHHHHHHHHhhhceeeeeeeEEEEEE-------EEeeeccCCceEEEEEEEEEEEeccc-----
Confidence            699999999998 99999999999999999985433332221       112333333222  233344432211     


Q ss_pred             HhccCCCccCCCCceEEEEEEchhhHhhccCC
Q 021805          253 QLQGKETGLRDHGELIKVRVVPYRELWRTTPD  284 (307)
Q Consensus       253 ~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D  284 (307)
                          .   ....+|..+++|++++++.+++..
T Consensus       108 ----~---~~~~~e~~~~~W~~~~e~~~~l~~  132 (147)
T d2azwa1         108 ----L---SEPLERTNTLHWVAPEEAVRLLKR  132 (147)
T ss_dssp             ----C---SSCC-CCSEEEEECHHHHHHHBSC
T ss_pred             ----c---CCCCccceEEEEEEHHHHHHHcCC
Confidence                1   123456778999999999888763

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.57  E-value=3.8e-15  Score=124.97  Aligned_cols=131  Identities=18%  Similarity=0.181  Sum_probs=75.2

Q ss_pred             CEEEEEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCC--
Q 021805          145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPST--  222 (307)
Q Consensus       145 ~aVaVl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~--  222 (307)
                      .+|+++++ ++++  +|||+++...+   ..|++|||+||.| |++.+||+||++||||+++.............-..  
T Consensus        15 ~~Vg~vI~-n~~~--~vLL~kR~~~~---g~W~~PgG~ve~g-Et~~~Aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~   87 (165)
T d1jkna_          15 RNVGICLM-NNDK--KIFAASRLDIP---DAWQMPQGGIDEG-EDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPK   87 (165)
T ss_dssp             EEEEEEEE-CTTS--CEEEEEESSST---TCEECCEECCCTT-CCHHHHHHHHHHHHTCCCSEEEEEECSSCEEEECCHH
T ss_pred             ccEEEEEE-eCCC--EEEEEEEcCCC---CcccCccceEcCC-CChhHHHHHHHHHhhccccccccccccccccccccce
Confidence            36777654 3334  59998765432   3699999999998 99999999999999999985322211111000000  


Q ss_pred             ---CceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChh
Q 021805          223 ---GCKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAK  286 (307)
Q Consensus       223 ---~~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~k  286 (307)
                         .....-.++......++|++........+. +...   ..+..|..+++|++++++.+++.+-|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~---~~~~~E~~~~~W~~~~el~~~i~~fk  150 (165)
T d1jkna_          88 VREKLNIQWGSDWKGQAQKWFLFKFTGQDQEIN-LLGD---GSEKPEFGEWSWVTPEQLIDLTVEFK  150 (165)
T ss_dssp             HHHHHHHHTCCCCSEEEECCEEEEECSCTTTCC-SSCS---SSSCCCEEEEEEECTTHHHHHSCGGG
T ss_pred             eeceeeeeecCCccceeeEEEEEEEeCCCceee-cCCC---CCCCCeeEEeEECCHHHHHHhcchhh
Confidence               000001233334444555554322211110 0000   11345889999999999999876543

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.6e-14  Score=119.01  Aligned_cols=107  Identities=17%  Similarity=0.149  Sum_probs=70.1

Q ss_pred             CCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccce
Q 021805          156 EGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDE  235 (307)
Q Consensus       156 ~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e  235 (307)
                      ++..++||+++.+   +...|.+|||++|+| |++.+||+||++||||+.+..  +..+....    ....+.. .....
T Consensus        26 ~~~~~~LL~~~~~---~~~~W~lPgG~ie~g-Et~~~aa~REl~EEtG~~~~~--~~~~~~~~----~~~~~~~-~~~~~   94 (153)
T d1xsba_          26 NNAIEFLLLQASD---GIHHWTPPKGHVEPG-EDDLETALRATQEEAGIEAGQ--LTIIEGFK----RELNYVA-RNKPK   94 (153)
T ss_dssp             STTEEEEEEEESS---TTCCEECCEEECCSS-SCHHHHHHHHHHHTTSCCTTT--EEECSSCC----EEEEEES-SSCEE
T ss_pred             CCCCEEEEEEecC---CCCcEECCeeecCCC-CCHHHHHHHHHHHHhCCccce--eeeeccce----eeecccc-cCcee
Confidence            4556888886533   234699999999998 999999999999999999853  33332110    0011222 22333


Q ss_pred             EEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          236 EISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       236 ~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      ...+|++......       +.   ....+|..+++|++++|+.+++.
T Consensus        95 ~~~~~~~~~~~~~-------~~---~~~~~E~~~~~W~~~~e~~~~~~  132 (153)
T d1xsba_          95 TVIYWLAEVKDYD-------VE---IRLSHEHQAYRWLGLEEACQLAQ  132 (153)
T ss_dssp             EEEEEEEEESCTT-------CC---CCCCTTEEEEEEECHHHHHHHTC
T ss_pred             EEEEEEEEEeecc-------cc---cCCCcceeEEEEEEHHHHHHhcC
Confidence            4445555443221       11   23457899999999999999886

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.57  E-value=5.8e-15  Score=127.05  Aligned_cols=106  Identities=22%  Similarity=0.229  Sum_probs=71.6

Q ss_pred             cCCceEEEEEEeeecC-CCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCcc
Q 021805          155 SEGETYAILTEQVRVP-TGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGC  233 (307)
Q Consensus       155 ~~g~~~VLLvrQ~R~p-~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~  233 (307)
                      ++++.+|||+++.... ..++.|.||||++|+| |++.+||+||++||||+...  .+..++.+.      .++. +  .
T Consensus        41 ~~~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~-E~~~~aAlRE~~EE~Gl~~~--~~~~lg~l~------~~~~-~--~  108 (187)
T d1nqza_          41 READPRVLLTVRSSELPTHKGQIAFPGGSLDAG-ETPTQAALREAQEEVALDPA--AVTLLGELD------DVFT-P--V  108 (187)
T ss_dssp             SSSSCBBCEEEEC------CCCEECSEEECCTT-CCHHHHHHHHHHHHHCCCGG--GCEEEEECC------CEEE-T--T
T ss_pred             ECCCCEEEEEEcCCCCCCCCCeEeCCccccccC-CchhHHHHHHHHHhhccccc--eeEEeeccc------ceee-c--c
Confidence            4556689998876542 2456899999999998 99999999999999999884  555565431      1333 2  2


Q ss_pred             ceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhc
Q 021805          234 DEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRT  281 (307)
Q Consensus       234 ~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~  281 (307)
                      ...++.|++....  ...       ......+|..++.|+|++++.+.
T Consensus       109 ~~~V~p~v~~l~~--~~~-------~~~~~~~EV~~v~~vpl~~L~~~  147 (187)
T d1nqza_         109 GFHVTPVLGRIAP--EAL-------DTLRVTPEVAQIITPTLAELRAV  147 (187)
T ss_dssp             TEEEEEEEEEECG--GGG-------GGCCCCTTEEEEECCBHHHHHHS
T ss_pred             ccEEEEEEEEECC--ccc-------cccccCCcceEEEeccHHHHhcC
Confidence            3456666654321  111       11346779999999999999764

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.56  E-value=2.6e-15  Score=125.70  Aligned_cols=113  Identities=12%  Similarity=0.168  Sum_probs=74.3

Q ss_pred             EEEEEEEEecCCceEEEEEEeee-cCCCCeEEEcc-ceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCC
Q 021805          146 AVAVLILLDSEGETYAILTEQVR-VPTGRVILELP-AGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG  223 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R-~p~g~~~wElP-aG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~  223 (307)
                      +|+++++ +.+|  ++||.++.. .+.....|++| ||++++| |++.+||+||++||||+++....+..+..       
T Consensus        30 ~v~~~v~-~~~g--~~Ll~rR~~~k~~~pg~w~~~~GG~ve~g-Es~~eaa~REl~EE~Gl~~~~~~~~~~~~-------   98 (162)
T d2o5fa1          30 VVNAFLR-NSQG--QLWIPRRSPSKSLFPNALDVSVGGAVQSG-ETYEEAFRREAREELNVEIDALSWRPLAS-------   98 (162)
T ss_dssp             EEEEEEE-CTTS--CEEEEEC-------CCSBCCSEEEECBTT-CCHHHHHHHHHHHHHCCCGGGSEEEEEEE-------
T ss_pred             EEEEEEE-cCCC--CEEEEEeccCccccccccccccCCcccCC-CChhhhhhhhhhheeCcceeeEEEEEEEE-------
Confidence            5665543 3344  477644321 12233578777 9999998 99999999999999999987555554432       


Q ss_pred             ceeecCCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          224 CKFFPSAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       224 ~~~~~spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                        +.+........+.+|.+...          +..  ..+++|..++.|++++|+.+++.
T Consensus        99 --~~~~~~~~~~~~~~~~~~~~----------~~~--~~~~~Ev~~~~W~~~eel~~~~~  144 (162)
T d2o5fa1          99 --FSPFQTTLSSFMCVYELRSD----------ATP--IFNPNDISGGEWLTPEHLLARIA  144 (162)
T ss_dssp             --ECTTTSSCSSEEEEEEEECS----------SCC--CCCTTTCSEEEEECHHHHHHHHH
T ss_pred             --eccccccceEEEEEEEEecC----------CCc--cCChhHeeEEEEeeHHHHHHHHH
Confidence              33334444556666665432          111  24678889999999999998876

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=5.5e-15  Score=123.04  Aligned_cols=115  Identities=11%  Similarity=0.098  Sum_probs=70.5

Q ss_pred             EEEEEEEEecCCceEEEEEEeeec-CCCCeEEEc-cceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCC
Q 021805          146 AVAVLILLDSEGETYAILTEQVRV-PTGRVILEL-PAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG  223 (307)
Q Consensus       146 aVaVl~il~~~g~~~VLLvrQ~R~-p~g~~~wEl-PaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~  223 (307)
                      +|+|+++ +++|  ++||.++... ...++.|.+ |||++|+| |++.+||+||++||||+++...+..... +      
T Consensus         4 a~~v~i~-n~~g--~vLl~kRs~~k~~~pg~w~~~pgG~ve~g-Et~~eaa~RE~~EE~Gi~~~~~~~~~~~-~------   72 (153)
T d1hzta_           4 AFSSWLF-NAKG--QLLVTRRALSKKAWPGVWTNSVCGHPQLG-ESNEDAVIRRCRYELGVEITPPESIYPD-F------   72 (153)
T ss_dssp             CEEEEEE-CTTC--CEEEEEECTTCSSSTTCEEESEEECCCTT-CCHHHHHHHHHHHHHCCCBSCCEEEETT-C------
T ss_pred             EEEEEEE-ECCC--EEEEEEeCCCCCCCCCceecccCceeecC-CcHHHHHHHHHHHHcCceeecccceecc-c------
Confidence            5666655 3344  5777654321 112345765 99999998 9999999999999999998643322111 0      


Q ss_pred             ceeecCCC--ccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          224 CKFFPSAG--GCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       224 ~~~~~spg--~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      ......++  .....+++|.+..  +        +..  .++++|..+++|++++|+.+++.
T Consensus        73 ~y~~~~~~~~~~~~~~~~~~~~~--~--------~~~--~~~~~Ev~~~~W~~~~el~~~i~  122 (153)
T d1hzta_          73 RYRATDPSGIVENEVCPVFAART--T--------SAL--QINDDEVMDYQWCDLADVLHGID  122 (153)
T ss_dssp             EEEEECTTSCEEEEECCEEEEEB--C--------SCC--CCCTTTEEEEEEECHHHHHHHHH
T ss_pred             cccccccccccceeEEEEEEEee--C--------CCc--cCChhheeEEEEeeHHHHHHHHH
Confidence            00112222  2233334454432  1        111  24678999999999999988865

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.49  E-value=5.4e-15  Score=120.64  Aligned_cols=44  Identities=27%  Similarity=0.409  Sum_probs=37.5

Q ss_pred             EEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccc
Q 021805          160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKL  208 (307)
Q Consensus       160 ~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~  208 (307)
                      +|||+++.+    ...|.+|||++|+| |++.+||+||++||||+++..
T Consensus        13 kvLl~~r~~----~~~w~lPgG~ie~g-E~~~~aa~RE~~EEtGl~~~~   56 (152)
T d1k2ea_          13 KVLLVKHKR----LGVYIYPGGHVEHN-ETPIEAVKREFEEETGIVVEP   56 (152)
T ss_dssp             EEEEEECTT----TCSEECSEEECCTT-CCHHHHHHHHHHHHHSEEEEE
T ss_pred             EEEEEEEcC----CCeEECCeeEEeCC-ccHHHHHHHHHHHHHCCceee
Confidence            598887532    23599999999998 999999999999999999853

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.22  E-value=9.7e-11  Score=101.05  Aligned_cols=122  Identities=16%  Similarity=0.092  Sum_probs=70.6

Q ss_pred             eEEEccceecCCCCCC-HHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceEEEEEEEEEechhHHHH
Q 021805          174 VILELPAGMLDDDKGD-FVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEEISLFLYRGRVDKEIIM  252 (307)
Q Consensus       174 ~~wElPaG~vD~g~Et-~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~i~lf~~~~~~~~~~i~  252 (307)
                      +.|+||||++|+| |+ .++||.||++||||+.+....+.....+       ..+...+......++|++..  ..+++.
T Consensus        53 g~~~~pgg~~~~~-e~~~~~~~~re~~ee~g~~~~~~~l~~~~~~-------~~~~~~~~~~~v~~fy~~~~--~~~~l~  122 (196)
T d1u20a1          53 GRLGFPGGFVDTR-DISLEEGLKRELEEELGPALATVEVTEDDYR-------SSQVREHPQKCVTHFYIKEL--KLEEIE  122 (196)
T ss_dssp             SCEECSEEEECTT-TSCHHHHHHHHHHHHHCGGGGGCCCCGGGEE-------EEEEECTTSCEEEEEEEEEC--CHHHHH
T ss_pred             CcEECCccccCCC-CCcHHHHHHHHHHHHhCccceeEEEEeeEEE-------EeccCCCCCEEEEEEEEEEc--chHHhh
Confidence            4699999999998 86 6789999999999999865444333210       01112222223334444432  333332


Q ss_pred             HhccC-CCccCCCCceEEEEEEchhhHhhccC-----Ch-hH--HHHHHHHHHHHhcCCCCC
Q 021805          253 QLQGK-ETGLRDHGELIKVRVVPYRELWRTTP-----DA-KV--LTAIALYEMASKEELLPS  305 (307)
Q Consensus       253 ~~~g~-~~g~~~~~E~i~v~wvpleel~~~i~-----D~-kt--l~al~L~~~~~~~g~lp~  305 (307)
                      ..... ........|...+.|||+.++.+...     +. +.  .+...++..++..+++|+
T Consensus       123 ~~e~~~~~a~~~~~E~~~~~wVPl~~L~d~~~~lP~Fl~~~fi~~a~~qll~aL~~~~lL~~  184 (196)
T d1u20a1         123 RIEAEAVNAKDHGLEVMGLIRVPLYTLRDRVGGLPAFLCNNFIGNSKSQLLYALRSLKLLRE  184 (196)
T ss_dssp             HHHHHHTTSTTBTTTEEEEEECCCSBCTTSSTBHHHHTTSCBCTTHHHHHHHHHHHTTSSCH
T ss_pred             hhhhcccccCcCCccccceeEEeHHHhcccccCcchhHHhhHHHHHHHHHHHHHHHhcCCCH
Confidence            22111 11123456889999999998865331     11 11  133456677777777774

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.13  E-value=6.4e-11  Score=94.64  Aligned_cols=104  Identities=21%  Similarity=0.210  Sum_probs=58.1

Q ss_pred             EEEEEecCCceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeec
Q 021805          149 VLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFP  228 (307)
Q Consensus       149 Vl~il~~~g~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~  228 (307)
                      +.++.+++|  ++||.++......+++|+||+|.+|++ ++ .+++.||++||+|+++...+  .++.+      ...|+
T Consensus         8 ~~vi~~~~g--~iLl~kR~~~~~~~GlWefP~g~~e~~-~~-~e~l~rel~ee~gi~v~~~~--~l~~~------~H~fs   75 (127)
T d1rrqa2           8 VAVLADDEG--RVLIRKRDSTGLLANLWEFPSCETDGA-DG-KEKLEQMVGEQYGLQVELTE--PIVSF------EHAFS   75 (127)
T ss_dssp             EEEEEESSS--EEEEEECCSSSTTTTCEECCEEECTTT-CC-HHHHHHTTC----CEEEECS--CCEEE------EEECS
T ss_pred             EEEEEECCC--EEEEEECCCCCCCCCceecccccccCC-CC-HHHHHHHhhhhcceEEEecc--ccccc------eEecC
Confidence            333343444  587765543333346899999999975 66 78999999999999985422  23221      01222


Q ss_pred             CCCccceEEEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          229 SAGGCDEEISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       229 spg~~~e~i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                      .   ..-.+++|.+....         +    ..   +..+++|++++|+.++..
T Consensus        76 h---~~~~~~~~~~~~~~---------~----~~---~~~~~~Wv~~~el~~~~~  111 (127)
T d1rrqa2          76 H---LVWQLTVFPGRLVH---------G----GP---VEEPYRLAPEDELKAYAF  111 (127)
T ss_dssp             S---EEEEEEEEEEEEEC---------C----SC---CCTTEEEEEGGGGGGSCC
T ss_pred             C---eEEEEEEEEEEECC---------C----Cc---cccceEEeeHHHHhHCCC
Confidence            1   12334455554321         1    11   223478999999988765

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.5e-10  Score=102.36  Aligned_cols=122  Identities=16%  Similarity=0.132  Sum_probs=70.2

Q ss_pred             eEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceee------ccccccCC---CCceeecC
Q 021805          159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMID------LTAFLYPS---TGCKFFPS  229 (307)
Q Consensus       159 ~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~------L~~l~~~~---~~~~~~~s  229 (307)
                      -+|||+++..    ...|.||||+||+| |++.+||+||+.||||+.+....+..      +..++...   ....++..
T Consensus       139 LqvLlIkR~d----~g~WaLPGG~Vd~G-Es~~~Aa~REl~EETGl~~~~~~~~~~~~~~~l~~l~~~~~~~~y~gyvdd  213 (292)
T d1q33a_         139 LQFVAIKRKD----CGEWAIPGGMVDPG-EKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDD  213 (292)
T ss_dssp             EEEEEEECTT----TCSEECCCEECCTT-CCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCC
T ss_pred             eEEEEEEecC----CCcEeCCcccCCCC-CCHHHHHHHHHHHHhCcccccccccccccccceeeeccccccccccccccc
Confidence            3577876532    23699999999998 99999999999999999875322110      00000000   00112333


Q ss_pred             CCccce--EEE-EEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccCChhHHHHH
Q 021805          230 AGGCDE--EIS-LFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTPDAKVLTAI  291 (307)
Q Consensus       230 pg~~~e--~i~-lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~D~ktl~al  291 (307)
                      +..++.  .+. .|.+... .....    +.. .....+|..+++|++++++.++.++.+.+...
T Consensus       214 prntd~aw~etva~~~h~~-~~~~~----~~~-~l~~~dEa~~v~W~~vde~~~L~~~H~~il~~  272 (292)
T d1q33a_         214 PRNTDNAWMETEAVNYHDE-TGEIM----DNL-MLEAGDDAGKVKWVDINDKLKLYASHSQFIKL  272 (292)
T ss_dssp             TTCCSSEEEEEEEEEEEES-SSTTT----TTC-CCCCCTTCSEEEEEECCTTCCCSTTHHHHHHH
T ss_pred             cCCCCCCEEEEEEEEEEEc-ccccc----ccc-ccCCCCchheEEEEEhhccccchhhHHHHHHH
Confidence            333322  112 2322221 11100    111 12345688899999999999998888765533

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=7.5e-08  Score=77.23  Aligned_cols=101  Identities=8%  Similarity=-0.036  Sum_probs=63.8

Q ss_pred             ceEEEEEEeeecCCCCeEEEccceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCCccceE-
Q 021805          158 ETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAGGCDEE-  236 (307)
Q Consensus       158 ~~~VLLvrQ~R~p~g~~~wElPaG~vD~g~Et~~~AA~REl~EETGl~i~~~~L~~L~~l~~~~~~~~~~~spg~~~e~-  236 (307)
                      .++|||.+|...+.-+++||||+|.+|.+ |+..++|.||..+|.+..+....+..++.+           ...+++.. 
T Consensus        26 ~~~iLl~kR~~~g~l~GlWefP~~~~~~~-e~~~~~~~~~~~~e~~~~~~~~~~~~~~~v-----------~H~fsH~~~   93 (142)
T d1x51a1          26 GAQILLVQRPNSGLLAGLWEFPSVTWEPS-EQLQRKALLQELQRWAGPLPATHLRHLGEV-----------VHTFSHIKL   93 (142)
T ss_dssp             SEEEEEEECCCCSTTCSCEECCEEECCSS-HHHHHHHHHHHHHHHSCCCCSTTCEECCCB-----------CCBCSSCEE
T ss_pred             CCEEEEEECCCCCCCCcceeeeEeeccCC-cchhHHHHHHHHHHhccCcceeeeeeeccc-----------eeccCCcce
Confidence            35788877644444456999999999997 999888887777776665554444444431           22334444 


Q ss_pred             -EEEEEEEEechhHHHHHhccCCCccCCCCceEEEEEEchhhHhhccC
Q 021805          237 -ISLFLYRGRVDKEIIMQLQGKETGLRDHGELIKVRVVPYRELWRTTP  283 (307)
Q Consensus       237 -i~lf~~~~~~~~~~i~~~~g~~~g~~~~~E~i~v~wvpleel~~~i~  283 (307)
                       +++|.+..  ..       +    .....|..+.+|++.+|+.++..
T Consensus        94 ~~~v~~~~~--~~-------~----~~~~~~~~~~~W~~~~el~~~~l  128 (142)
T d1x51a1          94 TYQVYGLAL--EG-------Q----TPVTTVPPGARWLTQEEFHTAAV  128 (142)
T ss_dssp             EEEEEEEEC--SS-------C----CCCCCCCTTEEEEEHHHHHHSCC
T ss_pred             EEEEEEEEE--eC-------C----CcccccCccCEEeeHHHccccCC
Confidence             45555443  21       1    11233445689999999988764