Citrus Sinensis ID: 021806

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
Protein Sequence
MMPAKPDENRQLDRGAQSVSQSAIYSQRPWWSGTGTGASLAEAAAPKSSREQPNGSVVNGATYSQDGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYNTSSGSVEGNFLGQQRGSMQGNGAPRGALPVK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccEcccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHcccHHcccccHHHHHHHHHHHccccccccEcccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcEcccccccccccccc
Coil and Loop (DISEMBL)
mmpakpdenrqldrgaqsvsqsaiysqrpwwsgtgtgaslaeaaapkssreqpngsvvngatysqdgingqehahlkhipsstpltmgerleqnsqmELVGHSIvltsypytdpqhvgvitpyvpqamippqlygmhqarmplplemeeepvyvnAKQYRGILRRRQSRAKAELEKKVIKARkpylhesrHQHAMRRArgcggrflntkklndNAANSaekgmnsgadsskgstngtgsvdsSIVQQERAMEEnahmehtssnsnsnnRSLLSMYntssgsvegnflgqqrgsmqgngaprgalpvk
Flexible Loop (DISEMBL)
mmpakpdenrqldrgaQSVSqsaiysqrpwwsGTGTGASLAEAaapkssreqpngsVVNGATYSQDGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEkkvikarkpylhesrhqhamrrargcggrflnTKKLNDNAANSAEKgmnsgadsskgstngtgsvDSSIVQQERAMEENAhmehtssnsnsnnRSLLSMYNTSSGSVEGNFLGqqrgsmqgngaprgalpvk
Low Complexity Region (SEG)
MMPAKPDENRQLDRGAQSVSQSAIYSQRPWWSGTGTGASLAEAAAPKSSREQPNGSVVNGATYSQDGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARmplplemeeepVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVDSSIVQQERAMEENAHMEHTssnsnsnnrsllsMYNTSSGSVEGNFLGQQRGSMQGNGAPRGALPVK
Disordered region (IsUnstruct)
*****************************WW******************************************************************ELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPL****EPVYVNAKQYRGIL************************************************************************************************************************************************
Disordered Region (DISOPRED)
*******************************************************************************************************IVLTSYPYTDPQHVGVITPY************************EEEPVYVNAKQYRGILRRRQSR******************************************************************************************************************************************
Disordered Region (DISEMBL)
************************YSQRPWWSGTGTG******************SVVNGATYSQDGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGIL**********LEKKVIKARKPYL***********ARGCGGRFLNTKKLNDNAAN***************************VQQERAME**************NNRSLLSMYNTSSGSVEGNFLGQQRGS**************
Disordered Region (DISPRO)
****************************************************************************************ERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRA**C****L*****************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMPAKPDENRQLDRGAQSVSQSAIYSQRPWWSGTGTGASLAEAAAPKSSREQPNGSVVNGATYSQDGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYNTSSGSVEGNFLGQQRGSMQGNGAPRGALPVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	307	2.2.26 [Sep-21-2011]
Q9LXV5	272	Nuclear transcription fac	yes	no	0.745	0.841	0.401	1e-34
Q945M9	303	Nuclear transcription fac	no	no	0.436	0.442	0.570	2e-34
Q84JP1	190	Nuclear transcription fac	no	no	0.420	0.678	0.537	2e-31
Q93ZH2	340	Nuclear transcription fac	no	no	0.338	0.305	0.588	2e-29
Q8VY64	198	Nuclear transcription fac	no	no	0.407	0.631	0.519	3e-29
Q9LNP6	328	Nuclear transcription fac	no	no	0.325	0.304	0.590	7e-29
Q9SYH4	308	Nuclear transcription fac	no	no	0.348	0.347	0.527	1e-26
Q9LVJ7	308	Nuclear transcription fac	no	no	0.315	0.314	0.58	6e-26
Q9M9X4	295	Nuclear transcription fac	no	no	0.436	0.454	0.436	7e-25
Q8LFU0	269	Nuclear transcription fac	no	no	0.358	0.408	0.458	4e-21

>sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1

 Score =  146 bits (369), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 141/264 (53%), Gaps = 35/264 (13%)

Query: 2   MPAKPD-ENRQLDRGAQSVSQSAIYSQRPWWSGTGTG----ASLAEAAAPKSSREQPNGS 56
           M +KP  EN +      +V Q  +Y++ PWW     G    A  +   +  SS + PNGS
Sbjct: 1   MQSKPGRENEEEVNNHHAVQQPMMYAE-PWWKNNSFGVVPQARPSGIPSNSSSLDCPNGS 59

Query: 57  VVNGA-TYSQDG-INGQEHAHLKHIPSSTPLTMGER--LEQNSQM--------------- 97
             N   + S+DG +NG+     K   ++T     +   +E N                  
Sbjct: 60  ESNDVHSASEDGALNGENDGTWKDSQAATSSRSVDNHGMEGNDPALSIRNMHDQPLVQPP 119

Query: 98  ELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAK 157
           ELVGH I     PY DP + G++  Y  Q +      GM + R  LPL+M +EPVYVNAK
Sbjct: 120 ELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAK 179

Query: 158 QYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAAN 217
           QY GILRRR++RAKAELE+KVI+ RKPYLHESRH+HAMRRAR  GGRF    ++      
Sbjct: 180 QYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKKSEV------ 233

Query: 218 SAEKGMNSGA-DSSKGS-TNGTGS 239
             E G ++G  D  +GS TN +GS
Sbjct: 234 --EAGEDAGGRDRERGSATNSSGS 255

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q945M9|NFYA9_ARATH Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/142 (57%), Positives = 98/142 (69%), Gaps = 8/142 (5%)

Query: 98  ELVGHSI-VLTSYPYTDPQHVGVITPY--VPQAMIPPQLYGMHQARMPLPLEMEEEPVYV 154
           +LVGH++   +S PY DP + GV+  Y   P   +P    GM  +RMPLP EM +EPV+V
Sbjct: 113 QLVGHTVGWASSNPYQDPYYAGVMGAYGHHPLGFVP--YGGMPHSRMPLPPEMAQEPVFV 170

Query: 155 NAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDN 214
           NAKQY+ ILRRRQ+RAKAELEKK+IK+RKPYLHESRHQHAMRR RG GGRF   KK N  
Sbjct: 171 NAKQYQAILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRPRGTGGRF--AKKTNTE 228

Query: 215 AAN-SAEKGMNSGADSSKGSTN 235
           A+   AE+  N     S  S+N
Sbjct: 229 ASKRKAEEKSNGHVTQSPSSSN 250

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JP1|NFYA7_ARATH Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1

 Score =  136 bits (343), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/132 (53%), Positives = 91/132 (68%), Gaps = 3/132 (2%)

Query: 109 YPYTDPQHVGVITPYV-PQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQ 167
           YPY DP +  +  P   P   +  QL G+ Q  +PLP +  EEPV+VNAKQY GILRRRQ
Sbjct: 58  YPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYHGILRRRQ 117

Query: 168 SRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSA--EKGMNS 225
           SRA+ E + KVIK+RKPYLHESRH HA+RR RGCGGRFLN KK +++  +S+  EK   S
Sbjct: 118 SRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSHEEKSNLS 177

Query: 226 GADSSKGSTNGT 237
              S+  +++GT
Sbjct: 178 AGKSAMAASSGT 189

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2

 Score =  129 bits (324), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 79/107 (73%), Gaps = 3/107 (2%)

Query: 108 SYPYTDPQHVGVITP-YVPQA-MIPPQLYGMHQARMPLPLEMEE-EPVYVNAKQYRGILR 164
           S+ Y DP + G++   Y+PQA    PQ+  M   R+PLP E+ E +PV+VNAKQY  I+R
Sbjct: 134 SFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMR 193

Query: 165 RRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKL 211
           RRQ RAK E + K+I+ARKPYLHESRH HA++R RG GGRFLNTKKL
Sbjct: 194 RRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGRFLNTKKL 240

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY64|NFYA4_ARATH Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1

 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 86/131 (65%), Gaps = 6/131 (4%)

Query: 109 YPYTDPQHVGVIT--PYVPQAM--IPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILR 164
           YPY DP +  V     Y+P     +  QL GM Q  +PL  +  EEPV+VNAKQY GILR
Sbjct: 53  YPYPDPYYRSVFAQQAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILR 112

Query: 165 RRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMN 224
           RRQSRAK E   + IKA+KPY+HESRH HA+RR RGCGGRFLN KK  +N  +  E+   
Sbjct: 113 RRQSRAKLEARNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKK--ENGDHKEEEEAT 170

Query: 225 SGADSSKGSTN 235
           S  ++S+ S++
Sbjct: 171 SDENTSEASSS 181

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNP6|NFYA8_ARATH Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2

 Score =  128 bits (321), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 65/110 (59%), Positives = 80/110 (72%), Gaps = 10/110 (9%)

Query: 108 SYPYTDPQHVGVITP--YVPQAMI-PPQLYGMHQARMPLPLEM-EEEPVYVNAKQYRGIL 163
           S+ Y DP H G + P  Y+PQA I  PQ+      R+PLP ++ E EPV+VNAKQ+  I+
Sbjct: 132 SFHYADP-HFGGLMPAAYLPQATIWNPQM-----TRVPLPFDLIENEPVFVNAKQFHAIM 185

Query: 164 RRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLND 213
           RRRQ RAK E + K+IKARKPYLHESRH HA++R RG GGRFLNTKKL +
Sbjct: 186 RRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFLNTKKLQE 235

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYH4|NFYA5_ARATH Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/108 (52%), Positives = 78/108 (72%), Gaps = 1/108 (0%)

Query: 124 VPQAMIPPQLYGMHQARMPLPLEMEE-EPVYVNAKQYRGILRRRQSRAKAELEKKVIKAR 182
            P A+   ++ G+  +R+PLP  ++E EP++VNAKQY  ILRRR+ RAK E + K+IK R
Sbjct: 151 TPTALPHLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCR 210

Query: 183 KPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSS 230
           KPYLHESRH HA++RARG GGRFLNTKKL +++ +     M +G + S
Sbjct: 211 KPYLHESRHLHALKRARGSGGRFLNTKKLQESSNSLCSSQMANGQNFS 258

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVJ7|NFYA6_ARATH Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana GN=NFYA6 PE=2 SV=1

 Score =  118 bits (295), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 73/100 (73%), Gaps = 3/100 (3%)

Query: 114 PQHVGVIT-PYVPQAMIP-PQLYGMHQARMPLPLEM-EEEPVYVNAKQYRGILRRRQSRA 170
           P   G ++ PY  Q  +  PQ+ G+  +RMPLP  + E EP++VNAKQY+ ILRRR+ RA
Sbjct: 132 PHFNGFLSFPYASQHTVQHPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRA 191

Query: 171 KAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKK 210
           K E + K+IK RKPYLHESRH HA++R RG GGRFLNTKK
Sbjct: 192 KLEAQNKLIKVRKPYLHESRHLHALKRVRGSGGRFLNTKK 231

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9X4|NFYA2_ARATH Nuclear transcription factor Y subunit A-2 OS=Arabidopsis thaliana GN=NFYA2 PE=2 SV=1

 Score =  114 bits (286), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 92/149 (61%), Gaps = 15/149 (10%)

Query: 105 VLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILR 164
           + T YPY + Q+ GV++ Y  Q+ +           +PL +E E+  +YVN+KQY GI+R
Sbjct: 101 IYTKYPYGEQQYYGVVSAYGSQSRV----------MLPLNMETEDSTIYVNSKQYHGIIR 150

Query: 165 RRQSRAKAE--LEKKVI--KARKPYLHESRHQHAMRRARGCGGRFLNTKKLN-DNAANSA 219
           RRQSRAKA   L++K +  + RKPY+H SRH HA+RR RG GGRFLNTK  N +N+  +A
Sbjct: 151 RRQSRAKAAAVLDQKKLSSRCRKPYMHHSRHLHALRRPRGSGGRFLNTKSQNLENSGTNA 210

Query: 220 EKGMNSGADSSKGSTNGTGSVDSSIVQQE 248
           +KG  S    S+     + S +S +V  E
Sbjct: 211 KKGDGSMQIQSQPKPQQSNSQNSEVVHPE 239

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFU0|NFYAA_ARATH Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana GN=NFYA10 PE=2 SV=2

 Score =  102 bits (253), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/131 (45%), Positives = 83/131 (63%), Gaps = 21/131 (16%)

Query: 104 IVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEE---PVYVNAKQYR 160
           ++ T +P+ + Q+ GV++ Y  Q             R+ +PL+ME E    +YVN+KQY 
Sbjct: 95  MMYTKHPHVE-QYYGVVSAYGSQ---------RSSGRVMIPLKMETEEDGTIYVNSKQYH 144

Query: 161 GILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAE 220
           GI+RRRQSRAKAE   K+ + RKPY+H SRH HAMRR RG GGRFLNTK      A++A+
Sbjct: 145 GIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMRRPRGSGGRFLNTK-----TADAAK 196

Query: 221 KGMNSGADSSK 231
           +   S + SS+
Sbjct: 197 QSKPSNSQSSE 207

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
297736254	405	unnamed protein product [Vitis vinifera]	0.996	0.755	0.551	2e-86
225450115	346	PREDICTED: nuclear transcription factor	0.993	0.881	0.553	2e-86
224104075	376	predicted protein [Populus trichocarpa]	0.928	0.757	0.543	6e-81
255553570	336	Nuclear transcription factor Y subunit A	0.973	0.889	0.521	1e-80
343157308	377	CCAAT-binding transcription factor subun	0.912	0.742	0.536	4e-80
449436305	318	PREDICTED: nuclear transcription factor	0.986	0.952	0.537	4e-78
449488843	318	PREDICTED: nuclear transcription factor	0.986	0.952	0.534	3e-77
356544165	303	PREDICTED: nuclear transcription factor	0.921	0.933	0.531	4e-73
388523193	304	nuclear transcription factor Y subunit A	0.925	0.934	0.465	1e-60
363814344	304	uncharacterized protein LOC100789738 [Gl	0.918	0.927	0.509	8e-59

>gi|297736254|emb|CBI24892.3| unnamed protein product [Vitis vinifera]

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 192/348 (55%), Positives = 225/348 (64%), Gaps = 42/348 (12%)

Query: 1   MMPAKPD-ENRQLDRGAQSVSQSAIYSQRPWWSGTGTGA----SLAEAAAPKSSRE---- 51
           +MP KP  E+R+++ G +S   S +YSQ PWW G G  A    +L  + +  +S E    
Sbjct: 59  IMPTKPKIEDRRIEPGGKSNPSSTVYSQ-PWWHGVGNNAISPAALGGSPSKSTSVEHLNS 117

Query: 52  ---------QPNGSVVNGATYSQ----------DGINGQEHAHLKHIPSSTPLTMGERLE 92
                    Q NG + +G T+++          DG NGQEH HL    SST   M E LE
Sbjct: 118 HITSNGFQLQANGRLDDGTTFNKGTQPTVALQSDGRNGQEHQHLNPTASSTLPIMSEHLE 177

Query: 93  QNSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPV 152
            NSQMELVGHSIVLTSYPY DP +VG++T Y PQAM+ P L+GMHQ RMPLPLEMEEEPV
Sbjct: 178 PNSQMELVGHSIVLTSYPYQDPHNVGIMTSYGPQAMVHPHLFGMHQPRMPLPLEMEEEPV 237

Query: 153 YVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLN 212
           YVNAKQY GILRRRQSRAKAELEKK IK RKPYLHESRHQHAMRRARGCGGRFLNTKKL+
Sbjct: 238 YVNAKQYHGILRRRQSRAKAELEKKAIKVRKPYLHESRHQHAMRRARGCGGRFLNTKKLD 297

Query: 213 DNAAN-SAEKGMNSGADSSKGS----------TNGTGSVDSSIVQQERAMEENAHM--EH 259
           +N AN +AEKG  SGA  S  S          TN + ++DSS VQQE        M   H
Sbjct: 298 NNDANTTAEKGSVSGAALSTQSASSSGSEHLPTNSSRNLDSSSVQQEEKGRTIQDMLEAH 357

Query: 260 TSSNSNSNNRSLLSMYNTSSGSVEGNFLGQQRGSMQGNGAPRGALPVK 307
           T SN N N   L S Y++S+GS  G+  GQ R +MQ N AP  ALP+K
Sbjct: 358 TYSNGNRNGHGLSSAYHSSNGSEGGDCFGQPRENMQLNTAPHRALPIK 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450115|ref|XP_002278849.1| PREDICTED: nuclear transcription factor Y subunit A-1-like [Vitis vinifera]

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 192/347 (55%), Positives = 224/347 (64%), Gaps = 42/347 (12%)

Query: 2   MPAKPD-ENRQLDRGAQSVSQSAIYSQRPWWSGTGTGA----SLAEAAAPKSSRE----- 51
           MP KP  E+R+++ G +S   S +YSQ PWW G G  A    +L  + +  +S E     
Sbjct: 1   MPTKPKIEDRRIEPGGKSNPSSTVYSQ-PWWHGVGNNAISPAALGGSPSKSTSVEHLNSH 59

Query: 52  --------QPNGSVVNGATYSQ----------DGINGQEHAHLKHIPSSTPLTMGERLEQ 93
                   Q NG + +G T+++          DG NGQEH HL    SST   M E LE 
Sbjct: 60  ITSNGFQLQANGRLDDGTTFNKGTQPTVALQSDGRNGQEHQHLNPTASSTLPIMSEHLEP 119

Query: 94  NSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVY 153
           NSQMELVGHSIVLTSYPY DP +VG++T Y PQAM+ P L+GMHQ RMPLPLEMEEEPVY
Sbjct: 120 NSQMELVGHSIVLTSYPYQDPHNVGIMTSYGPQAMVHPHLFGMHQPRMPLPLEMEEEPVY 179

Query: 154 VNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLND 213
           VNAKQY GILRRRQSRAKAELEKK IK RKPYLHESRHQHAMRRARGCGGRFLNTKKL++
Sbjct: 180 VNAKQYHGILRRRQSRAKAELEKKAIKVRKPYLHESRHQHAMRRARGCGGRFLNTKKLDN 239

Query: 214 NAAN-SAEKGMNSGADSSKGS----------TNGTGSVDSSIVQQERAMEENAHM--EHT 260
           N AN +AEKG  SGA  S  S          TN + ++DSS VQQE        M   HT
Sbjct: 240 NDANTTAEKGSVSGAALSTQSASSSGSEHLPTNSSRNLDSSSVQQEEKGRTIQDMLEAHT 299

Query: 261 SSNSNSNNRSLLSMYNTSSGSVEGNFLGQQRGSMQGNGAPRGALPVK 307
            SN N N   L S Y++S+GS  G+  GQ R +MQ N AP  ALP+K
Sbjct: 300 YSNGNRNGHGLSSAYHSSNGSEGGDCFGQPRENMQLNTAPHRALPIK 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104075|ref|XP_002313307.1| predicted protein [Populus trichocarpa] gi|222849715|gb|EEE87262.1| predicted protein [Populus trichocarpa]

 Score =  306 bits (785), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 180/331 (54%), Positives = 216/331 (65%), Gaps = 46/331 (13%)

Query: 2   MPAKPD-ENRQLDRGAQSVSQSAIYSQRPWWSGTGTGASLAEAAAPKSSREQPNGSVVNG 60
           MPAK + E+R+LD    S  Q+ IYSQ PWW   G  +SL + A+  SS E  NGS+ N 
Sbjct: 1   MPAKSEKEDRRLDHSGPSPFQTNIYSQ-PWWRDVGNSSSLGDTASKLSSVEHLNGSLANA 59

Query: 61  ATYSQ-----------------------DGINGQEHAHLKHIPSSTPLTMGERLEQNSQM 97
           A  SQ                       D  N QEH HLKHIPS T +TMG  LE NSQM
Sbjct: 60  AIQSQVNTGLQKGAMVNKDMQTDVTSQSDESNEQEH-HLKHIPSPTTVTMGGHLEPNSQM 118

Query: 98  ELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAK 157
           ELVGHSIVLTS+PYTDPQ+ G+   Y  QAM+P QLYGM  ARMPLPLEMEEEPVYVNAK
Sbjct: 119 ELVGHSIVLTSHPYTDPQYGGMFASYGAQAMVP-QLYGMPHARMPLPLEMEEEPVYVNAK 177

Query: 158 QYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAAN 217
           Q+ GI+RRRQ+RAKAELEKK +K RKPYLHESRHQHA+RRARGCGGRFLNTKKL+++A N
Sbjct: 178 QFHGIMRRRQARAKAELEKKAVKVRKPYLHESRHQHALRRARGCGGRFLNTKKLDNSATN 237

Query: 218 -SAEKGMNSGADSSKGS----------TNGTGSVDSSIVQQERAMEENAHMEHTSSNSNS 266
            ++EKG+NS A+ SK S          T G+G ++SS         E       SSN + 
Sbjct: 238 PTSEKGINSVANISKQSYSFSVSECFPTEGSGDLNSS------GDLEEGKGSQASSNGHG 291

Query: 267 NNRSLLSMYNTSSGSVEGNFLGQQRGSMQGN 297
           N  +L S Y++SS   +G+FLGQQ+ +  GN
Sbjct: 292 NGHALSSRYHSSSH--DGSFLGQQKETTHGN 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553570|ref|XP_002517826.1| Nuclear transcription factor Y subunit A-1, putative [Ricinus communis] gi|223543098|gb|EEF44633.1| Nuclear transcription factor Y subunit A-1, putative [Ricinus communis]

 Score =  306 bits (783), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 178/341 (52%), Positives = 222/341 (65%), Gaps = 42/341 (12%)

Query: 2   MPAKPD-ENRQLDRGAQSVSQSAIYSQRPWWSGTGTGASLAEAAAPKSSREQPNGSVVNG 60
           MPAK +  +++LD+G   V QS+IYSQ PWW G G  ++  E+ +  SS +  NGS+ NG
Sbjct: 1   MPAKLETRDQRLDQG---VFQSSIYSQ-PWWRGVGNSSTFEESTSKSSSSDHLNGSLSNG 56

Query: 61  ATYSQ-----------------------DGINGQEHAHLKHIPSSTPLTMGERLEQNSQM 97
              SQ                       DGINGQ H HLK +PSS P+TM   +E NSQM
Sbjct: 57  PIRSQANLTLDNGANSNKDTQVAVSSQSDGINGQGH-HLKQVPSSAPVTMVGHVEPNSQM 115

Query: 98  ELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAK 157
           ELVGHSIVLTSYPY+D Q+ G++  Y PQAM+ PQLYGMH ARM LPLEMEEEPVYVNAK
Sbjct: 116 ELVGHSIVLTSYPYSDAQYGGMLPSYAPQAMVTPQLYGMHHARMALPLEMEEEPVYVNAK 175

Query: 158 QYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAAN 217
           Q+ GILRRRQ+RAKAE+EKK IKARKPYLHESRHQHAMRRARGCGGRFL++KK   N  N
Sbjct: 176 QFNGILRRRQARAKAEIEKKAIKARKPYLHESRHQHAMRRARGCGGRFLSSKKPESNTKN 235

Query: 218 SA-EKGMNSGADSSKGST----------NGTGSVDSSIVQQERAMEENAHMEHTSSNSNS 266
            A +  +NS  ++S  S           NGT ++DS+  + + + + +    H+SS+ N 
Sbjct: 236 PASDNDVNSCINASTRSAILTGSEWLQKNGTRNLDSANGEGKGSTDHDMQ-SHSSSHGNG 294

Query: 267 NNRSLLSMYNTSSGS-VEGNFLGQQRGSMQGNGAPRGALPV 306
           N   L S+Y+ SSG  ++  FL QQR S   NG   GALP+
Sbjct: 295 NGHGLSSIYHPSSGDGLDRGFLVQQRASTHWNGVTNGALPI 335

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343157308|gb|AEL95437.1| CCAAT-binding transcription factor subunit B [Populus euphratica]

 Score =  303 bits (777), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 177/330 (53%), Positives = 209/330 (63%), Gaps = 50/330 (15%)

Query: 2   MPAKPD-ENRQLDRGAQSVSQSAIYSQRPWWSGTGTGASLAEAAAPKSSREQPNGSVVNG 60
           MPAK + E+R+LD    S  Q+ IYSQ PWW   G   SL + A+  SS    NGS+ N 
Sbjct: 1   MPAKSEKEDRRLDHRGPSPFQTNIYSQ-PWWRDVGNSPSLGDTASKLSSVGNLNGSLANA 59

Query: 61  ATYSQ-----------------------DGINGQEHAHLKHIPSSTPLTMGERLEQNSQM 97
           A  SQ                       D  NGQEH HLKHIPS T +TMG  LE NSQM
Sbjct: 60  AIQSQVNTGLQKGAMVNKDMQTDVTSQSDESNGQEH-HLKHIPSPTTVTMGGHLEPNSQM 118

Query: 98  ELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAK 157
           ELVGHSIVLTS+PYTDPQH G+   Y  QAM+P QLYGM QARMPLPLEMEEEPVYVNAK
Sbjct: 119 ELVGHSIVLTSHPYTDPQHGGMFASYGAQAMVP-QLYGMPQARMPLPLEMEEEPVYVNAK 177

Query: 158 QYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAAN 217
           Q+ GI+RRRQ+RAKAELEKK +K RKPYLHESRHQHAMRRARGCGGRFLNTKKL++N  N
Sbjct: 178 QFHGIMRRRQARAKAELEKKAVKVRKPYLHESRHQHAMRRARGCGGRFLNTKKLDNNTTN 237

Query: 218 -SAEKGMNSGADSSKGSTNGTGSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYN 276
            ++EKG         G  N +G +            E      +SSN + N  +L S Y+
Sbjct: 238 PTSEKG--------SGDLNSSGDL------------EEGKGSRSSSNGHGNGHALSSRYH 277

Query: 277 TSSGSVEGNFLGQQRGSMQGNGAPRGALPV 306
           +SS   +G+FLGQQ+ +  GN    GA+ +
Sbjct: 278 SSSH--DGSFLGQQKETTHGNRVSNGAVSI 305

Source: Populus euphratica

Species: Populus euphratica

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436305|ref|XP_004135933.1| PREDICTED: nuclear transcription factor Y subunit A-9-like [Cucumis sativus]

 Score =  297 bits (761), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 173/322 (53%), Positives = 211/322 (65%), Gaps = 19/322 (5%)

Query: 1   MMPAKPDE-NRQLDRGAQSVSQSAIYSQRPWWSGTGTGASLAEAAAPKSSREQPNGSVVN 59
           MMP++P+  ++Q+  GA+ + QS  +S+ PWW G G      E AA  SS E  N +V +
Sbjct: 1   MMPSEPENVDQQVADGAKYLLQSTKFSE-PWWHGVGNNTIAGEDAAKTSSAEYLNVTVAS 59

Query: 60  GATYSQ--DGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHV 117
           GAT  Q  D   G+E  HLK+IP ST   +GE L+ NSQMELVGHSIVLTSYP++D Q+ 
Sbjct: 60  GATQPQANDENIGKEVQHLKYIPFSTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYC 119

Query: 118 GVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKK 177
            ++T Y PQA +P ++YG+H ARMPLPLEMEEEPVYVNAKQY GILRRRQSRAKAELEKK
Sbjct: 120 QMLTSYGPQATLP-RIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKK 178

Query: 178 VIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLN------------DNAANSAEKGMNS 225
           VIK+RKPYLHESRH HAMRRARG GGRFLNTKK N            D+ AN + K + S
Sbjct: 179 VIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVMSNTNREEDIDSVANHSTKPV-S 237

Query: 226 GADSSKGSTNGTGSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYNTSSGSVEGN 285
            A S    TN  G  ++   Q    M +N  + H   N  SN    LS Y++  G VEG 
Sbjct: 238 EAVSKYMVTNEKGIKNTLDEQSREFMTQNMQITHAFFNGKSNVHG-LSTYSSQLGDVEGG 296

Query: 286 FLGQQRGSMQGNGAPRGALPVK 307
            L Q   SMQ NGAP+ A+P+K
Sbjct: 297 HLDQPHESMQVNGAPQRAIPIK 318

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449488843|ref|XP_004158189.1| PREDICTED: nuclear transcription factor Y subunit A-9-like [Cucumis sativus]

 Score =  294 bits (753), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 172/322 (53%), Positives = 210/322 (65%), Gaps = 19/322 (5%)

Query: 1   MMPAKPDE-NRQLDRGAQSVSQSAIYSQRPWWSGTGTGASLAEAAAPKSSREQPNGSVVN 59
           MMP++P+  ++Q+   A+ + QS  +S+ PWW G G      E AA  SS E  N +V +
Sbjct: 1   MMPSEPENVDQQVADRAKYLLQSTKFSE-PWWHGVGNNTIAGEDAAKTSSAEYLNVTVAS 59

Query: 60  GATYSQ--DGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHV 117
           GAT  Q  D   G+E  HLK+IP ST   +GE L+ NSQMELVGHSIVLTSYP++D Q+ 
Sbjct: 60  GATQPQANDENIGKEVQHLKYIPFSTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYC 119

Query: 118 GVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKK 177
            ++T Y PQA +P ++YG+H ARMPLPLEMEEEPVYVNAKQY GILRRRQSRAKAELEKK
Sbjct: 120 QMLTSYGPQATLP-RIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKK 178

Query: 178 VIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLN------------DNAANSAEKGMNS 225
           VIK+RKPYLHESRH HAMRRARG GGRFLNTKK N            D+ AN + K + S
Sbjct: 179 VIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVMSNTNREEDIDSVANHSTKPV-S 237

Query: 226 GADSSKGSTNGTGSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYNTSSGSVEGN 285
            A S    TN  G  ++   Q    M +N  + H   N  SN    LS Y++  G VEG 
Sbjct: 238 EAVSKYMVTNEKGIKNTLDEQSREFMTQNMQITHAFFNGKSNVHG-LSTYSSQLGDVEGG 296

Query: 286 FLGQQRGSMQGNGAPRGALPVK 307
            L Q   SMQ NGAP+ A+P+K
Sbjct: 297 HLDQPHESMQVNGAPQRAIPIK 318

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544165|ref|XP_003540525.1| PREDICTED: nuclear transcription factor Y subunit A-9-like [Glycine max]

 Score =  280 bits (717), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 161/303 (53%), Positives = 205/303 (67%), Gaps = 20/303 (6%)

Query: 2   MPAKPD-ENRQLDRGAQSVSQSAIYSQ-RPWWSGTGTGASLAEAAAPKSSREQPNGSVVN 59
           MP KPD ++ +++RG Q   QS+IYS  +PWW G G      E A+  SS +Q NGS+VN
Sbjct: 1   MPGKPDTDDWRVERGEQIQFQSSIYSHHQPWWRGVG------ENASKSSSDDQLNGSIVN 54

Query: 60  GATYSQD-----GINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDP 114
           G T S+      G   +E+ ++KH   STP TM + L  N QMELVGHS+VLTS PY+D 
Sbjct: 55  GITRSETNDKSGGGVAKEYQNIKHAMLSTPFTMEKHLAPNPQMELVGHSVVLTS-PYSDA 113

Query: 115 QHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAEL 174
           Q+  ++T Y  Q MI PQLYGMH ARMPLPLEMEEEPVYVNAKQY GILRRRQSRAKAE+
Sbjct: 114 QYGQILTTYGQQVMINPQLYGMHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAEI 173

Query: 175 EKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANS-AEKGMNSGADSSKGS 233
           EKKVIK RKPYLHESRH HAMRRARG GGRFLNTKKL +N +NS ++KG N+ A++S  S
Sbjct: 174 EKKVIKNRKPYLHESRHLHAMRRARGNGGRFLNTKKLENNNSNSTSDKGNNTRANASTNS 233

Query: 234 TNG----TGSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYNT-SSGSVEGNFLG 288
            N     T +++       +A  ++ H E + +    N   L ++Y + ++G  EGN  G
Sbjct: 234 PNTQLLFTNNLNLGSSNVSQATVQHMHTEQSFTIGYHNGNGLTALYRSQANGKKEGNCFG 293

Query: 289 QQR 291
           ++R
Sbjct: 294 KER 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388523193|gb|AFK49649.1| nuclear transcription factor Y subunit A7 [Medicago truncatula]

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 150/322 (46%), Positives = 194/322 (60%), Gaps = 38/322 (11%)

Query: 2   MPAKPD-ENRQLDRGAQSVSQSAIYSQ-RPWWSGTGTGASLAEAAAPKSSREQPNGSVVN 59
           MP KP+ ++ +++   Q    S+IYS  +PWW          E  +  SS +Q NGS++N
Sbjct: 1   MPGKPETDDWRIEHSEQVQLPSSIYSHHQPWW---------LENGSKPSSADQLNGSIMN 51

Query: 60  GATYSQ-------------DGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVL 106
             T+S+              G   +EH ++KH  SST  +M + L  NSQ ELVGHSIVL
Sbjct: 52  DVTHSEPLVSPSLSLTDNSGGDVAKEHRNIKHTLSSTTASMDKHLYPNSQRELVGHSIVL 111

Query: 107 TSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRR 166
           TS PY++ Q   ++  Y  QAM+ PQLY MH ARM LPL+MEEEPVYVNAKQY GILRRR
Sbjct: 112 TS-PYSNAQFGQILNAYGQQAMMNPQLYQMHHARMLLPLKMEEEPVYVNAKQYHGILRRR 170

Query: 167 QSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSA-EKGMNS 225
           QSRAKAELEKKVIK RKPYLHESRHQHA+RRARG GGRFLNTKK   N +N+A EKG N+
Sbjct: 171 QSRAKAELEKKVIKVRKPYLHESRHQHALRRARGNGGRFLNTKKPEHNDSNAALEKGNNT 230

Query: 226 GADSSKGSTNGTGSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYNTSSGSVEGN 285
           G  S   + N   S  S  + + +      H        + N  + L  ++ ++G  EG+
Sbjct: 231 GTTSGTNNENQGSSNVSQHMHKMQGFNIGYH--------DGNGFTALC-HSQANGKQEGD 281

Query: 286 FLGQQRGSMQGNGAPRGALPVK 307
           F G++R S   NG   G   ++
Sbjct: 282 FFGKKRES---NGEDEGLCLIQ 300

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814344|ref|NP_001242813.1| uncharacterized protein LOC100789738 [Glycine max] gi|255644824|gb|ACU22913.1| unknown [Glycine max]

 Score =  233 bits (594), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 155/304 (50%), Positives = 199/304 (65%), Gaps = 22/304 (7%)

Query: 2   MPAKPD-ENRQLDRGAQSVSQSAIYSQ-RPWWSGTGTGASLAEAAAPKSSREQPNGSVVN 59
           MP K D ++ +++RG Q   QS+IYS  +PW  G G      E A+  SS +Q NGS+VN
Sbjct: 1   MPGKADTDDWRVERGEQIQFQSSIYSHHQPWRGGVG------ENASKSSSADQLNGSIVN 54

Query: 60  GATYSQ------DGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTD 113
           G T S+      +G+  +E+ ++KH   STP TM + L  N QMELVGHS+VLTS PY++
Sbjct: 55  GITRSETNDKSGEGV-AKEYQNIKHAVLSTPFTMDKHLAPNPQMELVGHSVVLTS-PYSN 112

Query: 114 PQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAE 173
            QH  ++T Y  Q MI PQLYGM+ ARMPLP EMEEEPVYVNAKQY GILRRRQSRAKAE
Sbjct: 113 AQHGQILTTYGQQVMINPQLYGMYHARMPLPPEMEEEPVYVNAKQYHGILRRRQSRAKAE 172

Query: 174 LEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKL-NDNAANSAEKGMNSGADSSKG 232
           LEKKVIK RKPYLHESRH HAMRRARG GGRFLN KKL N N+  +++ G N+GA+ S  
Sbjct: 173 LEKKVIKNRKPYLHESRHLHAMRRARGNGGRFLNKKKLENYNSDATSDIGQNTGANPSTN 232

Query: 233 STNG----TGSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYNT-SSGSVEGNFL 287
           S N     T + +       +A  ++ H   + +    N   L  +Y++ ++G  EGN  
Sbjct: 233 SPNTQHLFTNNENLGSSNASQATVQDMHRVESFNIGYHNGNGLAELYHSQANGKKEGNCF 292

Query: 288 GQQR 291
           G++R
Sbjct: 293 GKER 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
TAIR|locus:2182245	272	NF-YA1 ""nuclear factor Y, sub	0.436	0.492	0.520	3.1e-35
TAIR|locus:2088791	303	NF-YA9 ""nuclear factor Y, sub	0.736	0.745	0.375	2.6e-32
TAIR|locus:2028150	190	NF-YA7 ""nuclear factor Y, sub	0.442	0.715	0.474	4.5e-27
TAIR|locus:2061534	198	NF-YA4 ""nuclear factor Y, sub	0.524	0.813	0.423	2.5e-26
TAIR|locus:2078072	295	NF-YA2 ""nuclear factor Y, sub	0.726	0.755	0.338	6.8e-24
TAIR|locus:2014375	308	NF-YA5 ""nuclear factor Y, sub	0.742	0.740	0.319	2.9e-23
TAIR|locus:2032758	341	NF-YA3 ""nuclear factor Y, sub	0.371	0.334	0.491	6.1e-23
TAIR|locus:2007953	328	NF-YA8 ""nuclear factor Y, sub	0.332	0.310	0.527	2.1e-22
TAIR|locus:2088232	308	NF-YA6 ""nuclear factor Y, sub	0.315	0.314	0.51	2.7e-20
TAIR|locus:2144113	269	NF-YA10 ""nuclear factor Y, su	0.690	0.788	0.319	9.2e-20

TAIR|locus:2182245 NF-YA1 ""nuclear factor Y, subunit A1"" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
 Identities = 75/144 (52%), Positives = 87/144 (60%)

Query:    98 ELVGHSIVLTSYPYTDPQHVGVITPYVPQAM-IPPQLYGMHQARXXXXXXXXXXXVYVNA 156
             ELVGH I     PY DP + G++  Y  Q +   P L GM + R           VYVNA
Sbjct:   120 ELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYL-GMPRERTALPLDMAQEPVYVNA 178

Query:   157 KQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAA 216
             KQY GILRRR++RAKAELE+KVI+ RKPYLHESRH+HAMRRAR  GGRF   KK    A 
Sbjct:   179 KQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRF--AKKSEVEAG 236

Query:   217 NSAEKGMNSGADSSKGS-TNGTGS 239
               A      G D  +GS TN +GS
Sbjct:   237 EDA-----GGRDRERGSATNSSGS 255

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2088791 NF-YA9 ""nuclear factor Y, subunit A9"" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
 Identities = 95/253 (37%), Positives = 130/253 (51%)

Query:     2 MPAKPDEN-RQLDRGAQSVSQSAIYSQRPWW-SGTGTGASLAEAAAPKSSREQPNGSVVN 59
             M +K D    ++D        S+I S  PW  +     A+ +  A  KSS+        N
Sbjct:     6 MHSKSDSGGNKVDSEVHGTVSSSINSLNPWHRAAAACNANSSVEAGDKSSKSIALALESN 65

Query:    60 GATYSQDGINGQEHAHLKHIPSSTPLTMGERLEQNSQM------------ELVGHSIV-L 106
             G   S+   N     + +   +++P + G+  ++N +             +LVGH++   
Sbjct:    66 G---SKSPSNRDNTVNKESQVTTSPQSAGDYSDKNQESLHHGITQPPPHPQLVGHTVGWA 122

Query:   107 TSYPYTDPQHVGVITPYV--PQAMIPPQLYG-MHQARXXXXXXXXXXXVYVNAKQYRGIL 163
             +S PY DP + GV+  Y   P   +P   YG M  +R           V+VNAKQY+ IL
Sbjct:   123 SSNPYQDPYYAGVMGAYGHHPLGFVP---YGGMPHSRMPLPPEMAQEPVFVNAKQYQAIL 179

Query:   164 RRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAAN-SAEKG 222
             RRRQ+RAKAELEKK+IK+RKPYLHESRHQHAMRR RG GGRF   KK N  A+   AE+ 
Sbjct:   180 RRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRPRGTGGRF--AKKTNTEASKRKAEEK 237

Query:   223 MNSGADSSKGSTN 235
              N     S  S+N
Sbjct:   238 SNGHVTQSPSSSN 250

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2028150 NF-YA7 ""nuclear factor Y, subunit A7"" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 66/139 (47%), Positives = 86/139 (61%)

Query:   102 HSIVLTSYPYTDPQHVGVITPYV-PQAMIPPQLYGMHQARXXXXXXXXXXXVYVNAKQYR 160
             +S+    YPY DP +  +  P   P   +  QL G+ Q             V+VNAKQY 
Sbjct:    51 NSMAPGQYPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYH 110

Query:   161 GILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSA- 219
             GILRRRQSRA+ E + KVIK+RKPYLHESRH HA+RR RGCGGRFLN KK +++  +S+ 
Sbjct:   111 GILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSH 170

Query:   220 -EKGMNSGADSSKGSTNGT 237
              EK   S   S+  +++GT
Sbjct:   171 EEKSNLSAGKSAMAASSGT 189

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

TAIR|locus:2061534 NF-YA4 ""nuclear factor Y, subunit A4"" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 75/177 (42%), Positives = 98/177 (55%)

Query:    69 NGQEHAHLKHIPSST-P-LTMG---ERLEQNS-QMELVGHSIVLTSYPYTDPQHVGVITP 122
             N + HA  +   S T P +  G   E ++ NS   E + H +    YPY DP +  V   
Sbjct:    11 NNESHAKKERPDSQTRPQVPSGRSSESIDTNSVYSEPMAHGL----YPYPDPYYRSVFAQ 66

Query:   123 --YVPQAM--IPPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGILRRRQSRAKAELEKKV 178
               Y+P     +  QL GM Q             V+VNAKQY GILRRRQSRAK E   + 
Sbjct:    67 QAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEARNRA 126

Query:   179 IKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTN 235
             IKA+KPY+HESRH HA+RR RGCGGRFLN KK  +N  +  E+   S  ++S+ S++
Sbjct:   127 IKAKKPYMHESRHLHAIRRPRGCGGRFLNAKK--ENGDHKEEEEATSDENTSEASSS 181

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009411 "response to UV" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=RCA

GO:0009751 "response to salicylic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2078072 NF-YA2 ""nuclear factor Y, subunit A2"" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 84/248 (33%), Positives = 116/248 (46%)

Query:    16 AQSVSQSAIYS--QRPWWSGTGTGASLAEAAAPKSSREQ--PNGSVVNGATYSQDGINGQ 71
             A    +  ++S  Q  WW+  G+     E+ A  S        GSV           N  
Sbjct:     2 AMQTVREGLFSAPQTSWWTAFGSQPLAPESLAGDSDSFAGVKVGSVGETGQRVDKQSNSA 61

Query:    72 EHA--HLKHI--PSSTPLTMGERLEQNSQMELVGHSI--VLTSYPYTDPQHVGVITPYVP 125
              H    L  +  P   P   G      S    +G S   + T YPY + Q+ GV++ Y  
Sbjct:    62 THLAFSLGDVKSPRLVPKPHGATFSMQSPCLELGFSQPPIYTKYPYGEQQYYGVVSAYGS 121

Query:   126 QAMIPPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGILRRRQSRAKAE--LEKKVI--KA 181
             Q+ +   L  M               +YVN+KQY GI+RRRQSRAKA   L++K +  + 
Sbjct:   122 QSRVMLPL-NME---------TEDSTIYVNSKQYHGIIRRRQSRAKAAAVLDQKKLSSRC 171

Query:   182 RKPYLHESRHQHAMRRARGCGGRFLNTKKLN-DNAANSAEKGMNSGADSSKGSTNGTGSV 240
             RKPY+H SRH HA+RR RG GGRFLNTK  N +N+  +A+KG  S    S+     + S 
Sbjct:   172 RKPYMHHSRHLHALRRPRGSGGRFLNTKSQNLENSGTNAKKGDGSMQIQSQPKPQQSNSQ 231

Query:   241 DSSIVQQE 248
             +S +V  E
Sbjct:   232 NSEVVHPE 239

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

TAIR|locus:2014375 NF-YA5 ""nuclear factor Y, subunit A5"" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 78/244 (31%), Positives = 120/244 (49%)

Query:    18 SVSQSAIYS--QRPWWSGTGTGASLAEAAAPKSSREQPNGS-VVNGATYSQDG---INGQ 71
             S+++  I S  Q P    +G      ++ + +S+ E+  G  V +   Y + G   +N  
Sbjct:    30 SLTKDMIMSTTQLPAMKHSGLQLQNQDSTSSQSTEEESGGGEVASFGEYKRYGCSIVNNN 89

Query:    72 EHAHL----KHIPSSTP-LTMGERLEQNSQMELVGHSIVLTSYPYTDPQHV-GVITP-YV 124
                ++    K I + T  +T    + Q+S         +  S    +  H  G + P Y 
Sbjct:    90 LSGYIENLGKPIENYTKSITTSSMVSQDSVFPAPTSGQISWSLQCAETSHFNGFLAPEYA 149

Query:   125 --PQAMIPPQLYGMHQARXXXXXXXXXXX-VYVNAKQYRGILRRRQSRAKAELEKKVIKA 181
               P A+   ++ G+  +R            ++VNAKQY  ILRRR+ RAK E + K+IK 
Sbjct:   150 STPTALPHLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKC 209

Query:   182 RKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVD 241
             RKPYLHESRH HA++RARG GGRFLNTKKL +++ +     M +G + S     G   + 
Sbjct:   210 RKPYLHESRHLHALKRARGSGGRFLNTKKLQESSNSLCSSQMANGQNFSMSPHGGGSGIG 269

Query:   242 SSIV 245
             SS +
Sbjct:   270 SSSI 273

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2032758 NF-YA3 ""nuclear factor Y, subunit A3"" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 58/118 (49%), Positives = 74/118 (62%)

Query:   108 SYPYTDPQHVGVITP-YVPQA-MIPPQLYGMHQARXXXXXXXXXXX-VYVNAKQYRGILR 164
             S+ Y DP + G++   Y+PQA    PQ+  M   R            V+VNAKQY  I+R
Sbjct:   134 SFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMR 193

Query:   165 RRQSRAKAELEKKVIKARK-PYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEK 221
             RRQ RAK E + K+I+ARK PYLHESRH HA++R RG GGRFLNTKKL   +  +A +
Sbjct:   194 RRQQRAKLEAQNKLIRARKVPYLHESRHVHALKRPRGSGGRFLNTKKLLQESEQAAAR 251

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2007953 NF-YA8 ""nuclear factor Y, subunit A8"" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 58/110 (52%), Positives = 72/110 (65%)

Query:   108 SYPYTDPQHVGVITP--YVPQAMI-PPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGILR 164
             S+ Y DP H G + P  Y+PQA I  PQ+  +               V+VNAKQ+  I+R
Sbjct:   132 SFHYADP-HFGGLMPAAYLPQATIWNPQMTRVPLP----FDLIENEPVFVNAKQFHAIMR 186

Query:   165 RRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDN 214
             RRQ RAK E + K+IKARKPYLHESRH HA++R RG GGRFLNTKKL ++
Sbjct:   187 RRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFLNTKKLQES 236

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

TAIR|locus:2088232 NF-YA6 ""nuclear factor Y, subunit A6"" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 51/100 (51%), Positives = 65/100 (65%)

Query:   114 PQHVGVIT-PYVPQAMIP-PQLYGMHQARXXXXXXXXXXX-VYVNAKQYRGILRRRQSRA 170
             P   G ++ PY  Q  +  PQ+ G+  +R            ++VNAKQY+ ILRRR+ RA
Sbjct:   132 PHFNGFLSFPYASQHTVQHPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRA 191

Query:   171 KAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKK 210
             K E + K+IK RKPYLHESRH HA++R RG GGRFLNTKK
Sbjct:   192 KLEAQNKLIKVRKPYLHESRHLHALKRVRGSGGRFLNTKK 231

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2144113 NF-YA10 ""nuclear factor Y, subunit A10"" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 76/238 (31%), Positives = 116/238 (48%)

Query:    27 QRPWWSGTGTGASLAEAAAPKSSREQPNGSVVNGATYSQDGI-NGQEHAHL-KHIP---- 80
             Q PWW+  G+     E+ + ++S        V   T ++ G+ + Q    L    P    
Sbjct:    11 QTPWWNAFGSQPLTTESLSGEASDSFTGVKAVT--TEAEQGVVDKQTSTTLFTFSPGGEK 68

Query:    81 SS--TPLTMGERLEQNSQMEL-VGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMH 137
             SS   P        Q++  E      ++ T +P+ + Q+ GV++ Y  Q      +  + 
Sbjct:    69 SSRDVPKPHVAFAMQSACFEFGFAQPMMYTKHPHVE-QYYGVVSAYGSQRSSGRVMIPLK 127

Query:   138 QARXXXXXXXXXXXVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRR 197
                           +YVN+KQY GI+RRRQSRAKAE   K+ + RKPY+H SRH HAMRR
Sbjct:   128 ME------TEEDGTIYVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMRR 178

Query:   198 ARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVDSSIVQQERAMEENA 255
              RG GGRFLNTK      A++A++   S + SS+       +++SS    E  + ++A
Sbjct:   179 PRGSGGRFLNTK-----TADAAKQSKPSNSQSSEVFHPENETINSSREANESNLSDSA 231

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	307
smart00521	62	smart00521, CBF, CCAAT-Binding transcription Facto	1e-33
pfam02045	57	pfam02045, CBFB_NFYA, CCAAT-binding transcription	2e-33
COG5224	248	COG5224, HAP2, CCAAT-binding factor, subunit B [Tr	7e-09

>gnl|CDD|128795 smart00521, CBF, CCAAT-Binding transcription Factor

 Score =  117 bits (295), Expect = 1e-33
 Identities = 48/62 (77%), Positives = 51/62 (82%)

Query: 147 MEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFL 206
            EEEPVYVNAKQY  ILRRRQ+RAK E + K+ K RKPYLHESRH HAMRR RG GGRFL
Sbjct: 1   AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFL 60

Query: 207 NT 208
           NT
Sbjct: 61  NT 62

Length = 62

>gnl|CDD|190198 pfam02045, CBFB_NFYA, CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

 Score =  116 bits (293), Expect = 2e-33
 Identities = 44/57 (77%), Positives = 50/57 (87%)

Query: 149 EEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRF 205
           +EP+YVNAKQY  ILRRRQ+RAK E E K+IK+RKPYLHESRH+HAMRR RG GGRF
Sbjct: 1   DEPIYVNAKQYHRILRRRQARAKLEAENKLIKSRKPYLHESRHKHAMRRPRGSGGRF 57

Length = 57

>gnl|CDD|227549 COG5224, HAP2, CCAAT-binding factor, subunit B [Transcription]

 Score = 55.2 bits (132), Expect = 7e-09
 Identities = 34/89 (38%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 149 EEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFL-- 206
            +P YVNAKQ   I +R   R    L+  V   R  YLHESRH+HAM R R   GRFL  
Sbjct: 158 FQPDYVNAKQGNEISKRPGLRVY--LDDSVSAGRAFYLHESRHKHAMLRVRDPTGRFLTA 215

Query: 207 -NTKKLNDNAANSAEKGMNSGADSSKGST 234
                LN          +      S GS+
Sbjct: 216 SEIDPLNLTGNTQDSMIIGQQTYPSHGSS 244

Length = 248

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	307
KOG1561	307	consensus CCAAT-binding factor, subunit B (HAP2) [	100.0
smart00521	62	CBF CCAAT-Binding transcription Factor.	100.0
PF02045	58	CBFB_NFYA: CCAAT-binding transcription factor (CBF	100.0
COG5224	248	HAP2 CCAAT-binding factor, subunit B [Transcriptio	99.78

>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]

Probab=100.00  E-value=8.2e-44  Score=333.82  Aligned_cols=119  Identities=55%  Similarity=0.773  Sum_probs=107.6

Q ss_pred             hhcccceeecc-CCCCCCccccccc---CCCCCcc--CCCcccCCCC-CCCCCCCCCCC-CceeechhhhHHHHHHHHHH
Q 021806           98 ELVGHSIVLTS-YPYTDPQHVGVIT---PYVPQAM--IPPQLYGMHQ-ARMPLPLEMEE-EPVYVNAKQYRGILRRRQSR  169 (307)
Q Consensus        98 el~g~s~a~~~-~Py~dp~ygg~~a---aYg~q~~--~~pq~~G~~~-~R~pLP~~~~e-ePvyVNaKQY~rIlrRRq~R  169 (307)
                      +.+.+..++++ +||.+|||+|++.   +|++|.+  +++++.||.. .|+|||.++.| |||||||||||||||||++|
T Consensus       124 ~a~~~~~~~~s~~~~~~p~~~g~~~~~~~y~~~~~~~~~~q~~g~~~~~r~pLP~~~~e~ePl~VNaKQY~~IlrRRq~R  203 (307)
T KOG1561|consen  124 TASMSPANNTSGNPITSPHYRGVLDMSGAYSGQPTNTASTQYSGPVPHDRTPLPQTDSETEPLYVNAKQYHRILRRRQAR  203 (307)
T ss_pred             ccccccccccccCCCCCCcccceecccccccCCCCccccccccCCCCcCcccCCccccCCCceeEcHHHHHHHHHHHHHH
Confidence            34667667664 7999999999999   8988765  5788999988 99999999866 99999999999999999999


Q ss_pred             HHHHHhhhhhhhCCCccccchhHHhhhcCCCCCCccccccccccchh
Q 021806          170 AKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAA  216 (307)
Q Consensus       170 aK~e~~~k~~k~rk~YlHESRH~HAm~R~Rg~gGRFl~~~~~~~~~~  216 (307)
                      ||||+++||+|.||||||||||+|||||+||+|||||++||.+++..
T Consensus       204 aKlEa~~klik~RkpYLHESRH~HAmkR~RG~GGRFln~k~~~~~ss  250 (307)
T KOG1561|consen  204 AKLEATTKLIKARKPYLHESRHLHAMKRARGEGGRFLNTKEYHDDSS  250 (307)
T ss_pred             hhhhhcccchhhcCccccchhhHHHhhcccCCCCCCCchhhhhhhcc
Confidence            99999999999999999999999999999999999999999776554

>smart00521 CBF CCAAT-Binding transcription Factor

Probab=100.00  E-value=2.4e-37  Score=233.90  Aligned_cols=62  Identities=77%  Similarity=1.142  Sum_probs=60.3

Q ss_pred             CCCCceeechhhhHHHHHHHHHHHHHHHhhhhhhhCCCccccchhHHhhhcCCCCCCccccc
Q 021806          147 MEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNT  208 (307)
Q Consensus       147 ~~eePvyVNaKQY~rIlrRRq~RaK~e~~~k~~k~rk~YlHESRH~HAm~R~Rg~gGRFl~~  208 (307)
                      ++++|||||||||++|||||++|||+|+++++++.||||||||||+|||+|+||+||||||+
T Consensus         1 ~~~~piyVNaKQy~~IlrRR~~Rak~e~~~kl~~~rkpYlhESRH~HAm~R~Rg~gGRFl~~   62 (62)
T smart00521        1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT   62 (62)
T ss_pred             CCCcceeEcHHHHHHHHHHHHHHHHHHHhcchhhccCCcccchhHHHHHccCcCCCCCCCCC
Confidence            47899999999999999999999999999999999999999999999999999999999985

>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []

Probab=100.00  E-value=7.5e-35  Score=218.08  Aligned_cols=57  Identities=77%  Similarity=1.171  Sum_probs=56.2

Q ss_pred             CCceeechhhhHHHHHHHHHHHHHHHhhhh-hhhCCCccccchhHHhhhcCCCCCCcc
Q 021806          149 EEPVYVNAKQYRGILRRRQSRAKAELEKKV-IKARKPYLHESRHQHAMRRARGCGGRF  205 (307)
Q Consensus       149 eePvyVNaKQY~rIlrRRq~RaK~e~~~k~-~k~rk~YlHESRH~HAm~R~Rg~gGRF  205 (307)
                      |+|||||||||++|||||++|||+|+++++ ++.||+|||||||+|||+|+||+||||
T Consensus         1 ~~piyVNaKQY~rIlrRR~~Rakle~~~k~~~~~rk~YlheSRH~HA~~R~Rg~gGRF   58 (58)
T PF02045_consen    1 EEPIYVNAKQYHRILRRRQARAKLEAEGKLSPKKRKPYLHESRHKHAMRRPRGPGGRF   58 (58)
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHcCccCCCCCC
Confidence            689999999999999999999999999999 999999999999999999999999999

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5224 HAP2 CCAAT-binding factor, subunit B [Transcription]

Probab=99.78  E-value=4e-20  Score=168.75  Aligned_cols=66  Identities=42%  Similarity=0.540  Sum_probs=59.4

Q ss_pred             CCCceeechhhhHHHHHHHHHHHHHHHhhhhhhhCCCccccchhHHhhhcCCCCCCccccccccccch
Q 021806          148 EEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKKLNDNA  215 (307)
Q Consensus       148 ~eePvyVNaKQY~rIlrRRq~RaK~e~~~k~~k~rk~YlHESRH~HAm~R~Rg~gGRFl~~~~~~~~~  215 (307)
                      ..+|.|||+|||++|+|||-+|++++.  +|+-.|..|||||||+|||+|+|+++||||++.|++..+
T Consensus       157 sfqp~Yvnakq~n~i~kr~~~r~~ld~--~~~~~r~~ylHesrhkham~r~r~ptgrfLtasEi~~ln  222 (248)
T COG5224         157 SFQPDYVNAKQGNEISKRPGLRVYLDD--SVSAGRAFYLHESRHKHAMLRVRDPTGRFLTASEIDPLN  222 (248)
T ss_pred             ccCcchhhhhhhhHHhcchhHHHHHHH--HhhhhhhhccccchhhhhhhcccCCCcceecHHhhhhhh
Confidence            478999999999999999999997765  566677779999999999999999999999999988765

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	307
4awl_A	78	The Nf-y Transcription Factor Is Structurally And F		9e-15
4g91_A	64	Ccaat-Binding Complex From Aspergillus Nidulans Len		7e-13

>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And Functionally A Sequence Specific Histone Length = 78

Iteration: 1
 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 45/58 (77%)
Query: 152 VYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTK 209
           +YVNAKQY  IL+RRQ+RAK E E K+ K R+ YLHESRH+HAM R RG GGRF + K
Sbjct: 5   LYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPK 62

>pdb|4G91|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans Length = 64

Iteration: 1
 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 43/57 (75%), Gaps = 1/57 (1%)
Query: 152 VYVNAKQYRGILRRRQSRAKAELEKKVI-KARKPYLHESRHQHAMRRARGCGGRFLN 207
           +YVNAKQ+  IL+RR +R K E + ++  K RKPYLHESRH HAMRR RG GGRFL 
Sbjct: 5   LYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLT 61

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	307
4g92_A	64	HAPB protein; transcription factor, nucleosome, mi	100.0

>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*

Probab=100.00  E-value=3.2e-37  Score=233.47  Aligned_cols=62  Identities=61%  Similarity=1.011  Sum_probs=58.5

Q ss_pred             CCceeechhhhHHHHHHHHHHHHHHHhhhhh-hhCCCccccchhHHhhhcCCCCCCccccccc
Q 021806          149 EEPVYVNAKQYRGILRRRQSRAKAELEKKVI-KARKPYLHESRHQHAMRRARGCGGRFLNTKK  210 (307)
Q Consensus       149 eePvyVNaKQY~rIlrRRq~RaK~e~~~k~~-k~rk~YlHESRH~HAm~R~Rg~gGRFl~~~~  210 (307)
                      |+|||||||||++|||||++|||+|++++++ +.||||||||||+|||+|+||+||||||++|
T Consensus         2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e   64 (64)
T 4g92_A            2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE   64 (64)
T ss_dssp             -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence            6999999999999999999999999999985 8899999999999999999999999999975

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00