Citrus Sinensis ID: 021816

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
Protein Sequence
MKWETEVISPASYISSSNWLLEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNNHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLNETRTSSPDTQRAPSPEQVTSGLSQQQPNCGGALSRTNFQWHQPNNGATTAFGSTQGNMFMTSPYGINSYGIKMPGQNLQRDAVHEPYFGLQNLAFQMQFPQG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEccccHHccccccEEcccccccccHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHcccccHcccHccEEcccHHHHHHHHHHHHHHHHccccccccccHHcccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccc
Coil and Loop (DISEMBL)
mkwetevispasyisssnwlleeskstRWTAAENKMFENALavydkdspdRWQKVAAMIPGKTVVDVIKQYKELEADISNIeagliplpgygnsspftLEWVnnhgydgfkhpyavggkrsssvrpaeherkkgvpwteEEHKLFLLGLkkhgkgdwrnisrnfvtsrtptqvASHAQKYFIRQLsggkdkrrasiHDITtvnlnetrtsspdtqrapspeqvtsglsqqqpncggalsrtnfqwhqpnngattafgstqgnmfmtspyginsygikmpgqnlqrdavhepyfglqNLAFQMQFPQG
Flexible Loop (DISEMBL)
mkwetevispasyisssnwllEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNNHGYDGFKHPYAVGGkrsssvrpaeherkkgvpwteeeHKLFLLglkkhgkgdwRNISRNfvtsrtptqvashAQKYFIRQlsggkdkrrasihdittvnlnetrtsspdtqraPSPEQVTSGLSQQQPNCGGALSRTNFQWHQPNNGATTAFGSTQGNMFMTSPYGINSYGIKMPGQNLQRDAVHEPYFGLQNLAFQMQFPQG
Low Complexity Region (SEG)
MKWETEVISPASYISSSNWLLEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNNHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTeeehklfllglkkhgkgDWRNISRNFVTSRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLNETRTSSPDTQRAPSPEQVTSGLSQQQPNCGGALSRTNFQWHQPNNGATTAFGSTQGNMFMTSPYGINSYGIKMPGQNLQRDAVHEPYFGLQNLAFQMQFPQG
Disordered region (IsUnstruct)
************YI**SNWLLE****TRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNNHGYDGFKHPYAV********************WTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQL*********************************************************FQW********TAFGSTQGNMFMTSPYGINSYGIKMPGQNLQRDAVHEPYFGLQNLAFQ******
Disordered Region (DISOPRED)
*********************************NKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNNHGYDG****************************TEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKY*********************************************************************************************************************L**QMQ****
Disordered Region (DISEMBL)
**********ASYISSSNWLLEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNNHGYDGFKHPYAVG*******************WTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLNE*****************************GALSRTNFQWHQPNNGATTAFGSTQGNMFMTSPYGINSYGIKMPGQNLQRDAVHEPYFGLQNLAFQMQFPQG
Disordered Region (DISPRO)
*KWETEVISPASYISSSNWLLEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNS*************************************KKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLS**********H****VNL***********************************************ATTAFGSTQGNMFMTSPYGINSYGIKMPGQNLQRDAVHEPYFGLQNLAFQMQ****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKWETEVISPASYISSSNWLLEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNNHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLNETRTSSPDTQRAPSPEQVTSGLSQQQPNCGGALSRTNFQWHQPNNGATTAFGSTQGNMFMTSPYGINSYGIKMPGQNLQRDAVHEPYFGLQNLAFQMQFPQG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	307	2.2.26 [Sep-21-2011]
Q8S9H7	307	Transcription factor DIVA	N/A	no	0.957	0.957	0.639	1e-109
Q2V9B0	297	Transcription factor MYB1	N/A	no	0.234	0.242	0.75	3e-22
Q1A173	97	Protein RADIALIS-like 6 O	no	no	0.205	0.649	0.587	2e-15
F4JVB8	100	Protein RADIALIS-like 1 O	no	no	0.228	0.7	0.5	8e-14
Q869R9	734	Myb-like protein J OS=Dic	yes	no	0.211	0.088	0.544	1e-13
Q58FS3	93	Transcription factor RADI	N/A	no	0.205	0.677	0.555	2e-13
Q8GW75	100	Protein RADIALIS-like 5 O	no	no	0.192	0.59	0.559	2e-12
Q9SIJ5	101	Protein RADIALIS-like 2 O	no	no	0.218	0.663	0.492	2e-12
Q6NNN0	81	Protein RADIALIS-like 3 O	no	no	0.205	0.777	0.492	2e-12
Q1G3C4	77	Protein RADIALIS-like 4 O	no	no	0.205	0.818	0.476	8e-11

>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1

 Score =  394 bits (1012), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/302 (63%), Positives = 240/302 (79%), Gaps = 8/302 (2%)

Query: 6   EVISPASYISSSNWLLEESKST-RWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTV 64
           E+++P+SY SSS+W LEES+ST RWTAAENK FENALAV+D+++P+RW++VA  +PGKTV
Sbjct: 2   EILAPSSYFSSSSWFLEESRSTTRWTAAENKAFENALAVFDENTPNRWERVAERVPGKTV 61

Query: 65  VDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNNHGYDGFKHPYAVGGKRSSSV 124
            DV++QYKELE D+S+IEAG +P+PGY  SSPFTLEW + HG+DGFK  Y  GG++SSS 
Sbjct: 62  GDVMRQYKELEDDVSSIEAGFVPVPGYSTSSPFTLEWGSGHGFDGFKQSYGTGGRKSSSG 121

Query: 125 RPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQ 184
           RP+E ERKKGVPWTEEEHKLFL+GLKK+GKGDWRNISRNFV +RTPTQVASHAQKYFIRQ
Sbjct: 122 RPSEQERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQ 181

Query: 185 LSGGKDKRRASIHDITTVNLNETRTSSPDTQRAP-SPEQVTSGLSQQQPNCGGALSRTNF 243
           LSGGKDKRRASIHDITTVNL++ +T SPD ++ P SP+   +    QQ     ++ +  F
Sbjct: 182 LSGGKDKRRASIHDITTVNLSDNQTPSPDNKKPPSSPDHSMA----QQQTSSTSIHKLPF 237

Query: 244 QWHQPNNGATTAFGST--QGNMFMTSPYGINSYGIKMPGQNLQRDAVHEPYFGLQNLAFQ 301
           QW Q +N     F S+   GNMF ++P+G+NSYG KM GQ +QR    + Y G QN+AFQ
Sbjct: 238 QWDQTSNETIMGFASSGHHGNMFQSNPFGMNSYGFKMQGQQMQRGGFCDTYLGSQNMAFQ 297

Query: 302 MQ 303
           MQ
Sbjct: 298 MQ 299

Involved in the dorsovental asymmetry of flowers. Promotes ventral identity.
Antirrhinum majus (taxid: 4151)

>sp|Q2V9B0|MY1R1_SOLTU Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1

 Score =  105 bits (263), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 64/72 (88%)

Query: 130 ERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLSGGK 189
           ERK+GVPWTEEEHKLFLLGL+K GKGDWR ISRNFV +RTPTQVASHAQKYF+R+ +  +
Sbjct: 90  ERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSNLNR 149

Query: 190 DKRRASIHDITT 201
            +RR+S+ DITT
Sbjct: 150 RRRRSSLFDITT 161

Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance.

Solanum tuberosum (taxid: 4113)

>sp|Q1A173|RADL6_ARATH Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 45/63 (71%)

Query: 29 WTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPL 88
          WT ++NKMFE ALAVYDKD+PDRW  VA  + GKTV +V + Y  L  D+ NIE G +PL
Sbjct: 12 WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRVPL 71

Query: 89 PGY 91
          P Y
Sbjct: 72 PNY 74

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|F4JVB8|RADL1_ARATH Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 47/70 (67%)

Query: 29 WTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPL 88
          WTA +NK FE ALA YD+D+P+RWQ VA ++ GKT  +V + Y+ L  DI++IE G +P 
Sbjct: 14 WTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENGHVPF 73

Query: 89 PGYGNSSPFT 98
          P Y  S   T
Sbjct: 74 PNYRTSGGCT 83

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q869R9|MYBJ_DICDI Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 51/68 (75%), Gaps = 3/68 (4%)

Query: 137 WTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLSGGKDKRRASI 196
           WT+EEH  FL G++ HGKG W+ I++ FV +RTPTQ+ SHAQKY++RQ    K+KR  SI
Sbjct: 379 WTKEEHIRFLNGIQIHGKGAWKEIAQ-FVGTRTPTQIQSHAQKYYLRQKQETKNKR--SI 435

Query: 197 HDITTVNL 204
           HD++  +L
Sbjct: 436 HDLSLQDL 443

Dictyostelium discoideum (taxid: 44689)

>sp|Q58FS3|RAD_ANTMA Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 43/63 (68%)

Query: 29 WTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPL 88
          W+A ENK FE ALAVYDKD+PDRW  VA  + G+T  +V K Y+ L  DI  IE+G +P 
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70

Query: 89 PGY 91
          P Y
Sbjct: 71 PNY 73

Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity.

Antirrhinum majus (taxid: 4151)

>sp|Q8GW75|RADL5_ARATH Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 41/59 (69%)

Query: 33 ENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGY 91
          +NKMFE ALAVYDKD+PDRWQ VA  +  K+  +V + Y  L  D+ NIE  L+PLP Y
Sbjct: 16 QNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNIEQDLVPLPKY 74

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIJ5|RADL2_ARATH Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)

Query: 29 WTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPL 88
          WT  +NK FE ALAVYD+D+PDRW  VA  + GKT  +  +QY  L  DI +IE G +P 
Sbjct: 14 WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIENGHVPF 73

Query: 89 PGYGNSS 95
          P Y  ++
Sbjct: 74 PDYKTTT 80

Probable transcription factor. Required for female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NNN0|RADL3_ARATH Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 43/63 (68%)

Query: 29 WTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPL 88
          WT  ENK+FE ALA YD+D+PDRW  VA  + GK+  +V + Y+ L  D+++IE+G  P 
Sbjct: 12 WTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDVNDIESGRYPH 71

Query: 89 PGY 91
          P Y
Sbjct: 72 PNY 74

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1G3C4|RADL4_ARATH Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 45/63 (71%)

Query: 33 ENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYG 92
          E+K FE ALA +DKD+PDRWQK+A  + GK+  +V + Y+ L  D+++IE+G  P P Y 
Sbjct: 15 EDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVNDIESGRYPQPRYR 74

Query: 93 NSS 95
          N++
Sbjct: 75 NTN 77

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
224106307	308	predicted protein [Populus trichocarpa]	0.980	0.977	0.753	1e-130
225434676	307	PREDICTED: uncharacterized protein LOC10	0.986	0.986	0.717	1e-128
255569255	307	DNA binding protein, putative [Ricinus c	0.983	0.983	0.728	1e-127
224059326	302	predicted protein [Populus trichocarpa]	0.964	0.980	0.731	1e-125
237664615	304	DIV1A protein [Heptacodium miconioides]	0.951	0.960	0.685	1e-112
356566155	321	PREDICTED: uncharacterized protein LOC10	0.973	0.931	0.656	1e-108
75330977	307	RecName: Full=Transcription factor DIVAR	0.957	0.957	0.639	1e-107
449523595	315	PREDICTED: transcription factor DIVARICA	0.986	0.961	0.630	1e-107
237664619	318	DIV3B protein [Heptacodium miconioides]	0.970	0.937	0.625	1e-105
356539533	323	PREDICTED: uncharacterized protein LOC77	0.970	0.922	0.654	1e-104

>gi|224106307|ref|XP_002314123.1| predicted protein [Populus trichocarpa] gi|222850531|gb|EEE88078.1| predicted protein [Populus trichocarpa]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/308 (75%), Positives = 260/308 (84%), Gaps = 7/308 (2%)

Query: 1   MKWETEVISPASYISSSNWLLEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIP 60
           MKWETE++SP SY+SSSNWL EESK+T+WT AENK FENALA+YDK++ DRW KVAAMIP
Sbjct: 1   MKWETEILSPGSYLSSSNWLAEESKNTKWTIAENKAFENALAIYDKETSDRWHKVAAMIP 60

Query: 61  GKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNN--HGYDGFKHPYAVGG 118
           GKTV DVIKQYKELE D+S IEAGLIP+PGY +SSPFTL+WVN   +GYDGFK  Y +GG
Sbjct: 61  GKTVEDVIKQYKELELDVSYIEAGLIPVPGY-SSSPFTLDWVNGNGYGYDGFKQSYGLGG 119

Query: 119 KRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQ 178
           KRSS+ RP + ERKKGVPWTEEEHKLFL+GLKK+GKGDWRNISRNFV SRTPTQVASHAQ
Sbjct: 120 KRSSTGRPTDQERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVISRTPTQVASHAQ 179

Query: 179 KYFIRQLSGGKDKRRASIHDITTVNLNETRTSSPDTQRAPSPEQVTSGLSQQQPNCGGAL 238
           KYFIRQLSGGKDKRRASIHDITTVNLNETRT SPD +R  SP+Q  SG   QQPN   A+
Sbjct: 180 KYFIRQLSGGKDKRRASIHDITTVNLNETRTPSPDNKRT-SPDQ--SGAISQQPNS-AAM 235

Query: 239 SRTNFQWHQPNNGATTAFGSTQGNMFMTSPYGINSYGIKMPGQNLQRDAVHEPYFGLQNL 298
            RT+FQW+QPN+GAT AF ST  NMFM+SPYGINSYG+KM GQN  R AVH+ Y G Q +
Sbjct: 236 PRTHFQWNQPNSGATMAFNSTNANMFMSSPYGINSYGLKMQGQNPHRGAVHDSYIGQQTM 295

Query: 299 AFQMQFPQ 306
            FQMQ  Q
Sbjct: 296 GFQMQSAQ 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434676|ref|XP_002280403.1| PREDICTED: uncharacterized protein LOC100244960 [Vitis vinifera] gi|147844863|emb|CAN81229.1| hypothetical protein VITISV_033664 [Vitis vinifera]

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/311 (71%), Positives = 255/311 (81%), Gaps = 8/311 (2%)

Query: 1   MKWETEVISPASYISSSNWLLEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIP 60
           MKWE E++SPASY+S+SN LLEESKS+RWT  ENK FENALAVYD+D+PDRWQKVAAMIP
Sbjct: 1   MKWEMEILSPASYLSNSNCLLEESKSSRWTPEENKTFENALAVYDRDTPDRWQKVAAMIP 60

Query: 61  GKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNNHGYDGFKHPYAVGGKR 120
           GKTV DV KQYKELE D+  IEAGL+P+PGY ++SPFTLEW  NHGY+G K PY +GGKR
Sbjct: 61  GKTVGDVFKQYKELELDVGKIEAGLVPIPGY-STSPFTLEWTTNHGYEGLKQPYGLGGKR 119

Query: 121 SSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKY 180
            SS RP + ERKKGVPWTEEEHKLFLLGLKK+GKGDWRNISRNFV +RTPTQVASHAQKY
Sbjct: 120 PSSTRPTDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 179

Query: 181 FIRQLSGGKDKRRASIHDITTVNLNETRTSSPDTQRAPSPEQVTSGLSQQQPNCGGALSR 240
           FIRQLSGGKDKRRASIHDITTVNL +TRT SP+ +R PSP+Q       +QPN    ++R
Sbjct: 180 FIRQLSGGKDKRRASIHDITTVNLTDTRTPSPENKRPPSPDQSIG--VPKQPNS-APMNR 236

Query: 241 TNFQWHQPNNGATTAFGSTQGNMFMTSPYGINSYGIKMPGQNLQRDAVHEPYFGLQNLAF 300
           T FQW QPN+GA  AF  T GN+FM+SPYG+NSYG+KM GQNL R A +E Y G Q++ F
Sbjct: 237 TTFQWSQPNSGAPMAFNPTHGNIFMSSPYGMNSYGLKMQGQNLHRAAFNESYIGPQSMVF 296

Query: 301 QMQ----FPQG 307
           QMQ    FP G
Sbjct: 297 QMQSTPHFPHG 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569255|ref|XP_002525595.1| DNA binding protein, putative [Ricinus communis] gi|223535031|gb|EEF36713.1| DNA binding protein, putative [Ricinus communis]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/306 (72%), Positives = 259/306 (84%), Gaps = 4/306 (1%)

Query: 1   MKWETEVISPASYISSSNWLLEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIP 60
           MKW+  V+SP SY+SS+NWL+EESK+T+WT AENKMFENALAVYDKD+PDRW KVAAMIP
Sbjct: 1   MKWDIGVLSPTSYLSSTNWLIEESKNTKWTPAENKMFENALAVYDKDTPDRWHKVAAMIP 60

Query: 61  GKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNNHGYDGFKHPYAVGGKR 120
           GKTV DVIKQY+ELE D++NIEAGL+P+PGY N+S FTL+WVN++ YDGFK  YA GGKR
Sbjct: 61  GKTVGDVIKQYRELEVDVNNIEAGLVPIPGY-NTSAFTLDWVNSNSYDGFKPSYAFGGKR 119

Query: 121 SSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKY 180
           SSS RPA+ ERKKGVPWTEEEHKLFL+GLKK+GKGDWRNISRNFV +RTPTQVASHAQKY
Sbjct: 120 SSSGRPADQERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 179

Query: 181 FIRQLSGGKDKRRASIHDITTVNLNETRTSSPDTQRAPSPEQVTSGLSQQQPNCGGALSR 240
           FIRQLSGGKDKRRASIHDITTVNLNE RT SP+ +R  SP+Q  S +  QQ N G +L R
Sbjct: 180 FIRQLSGGKDKRRASIHDITTVNLNEIRTPSPENKRQASPDQ--SSVFSQQSN-GVSLPR 236

Query: 241 TNFQWHQPNNGATTAFGSTQGNMFMTSPYGINSYGIKMPGQNLQRDAVHEPYFGLQNLAF 300
           T+FQW+QPN+GA  AF ST GNMF +S YG+NSYG+K+ G NL   ++HE Y G Q +AF
Sbjct: 237 THFQWNQPNSGAIMAFNSTNGNMFTSSTYGVNSYGMKLQGYNLHSGSLHESYIGPQTIAF 296

Query: 301 QMQFPQ 306
           QMQ  Q
Sbjct: 297 QMQSAQ 302

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059326|ref|XP_002299827.1| predicted protein [Populus trichocarpa] gi|222847085|gb|EEE84632.1| predicted protein [Populus trichocarpa]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/305 (73%), Positives = 256/305 (83%), Gaps = 9/305 (2%)

Query: 7   VISPASYISSSNWLLEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVD 66
           ++SPASY+SS+NWLLEESK+T+WT AENK FENALAVYD+D+PDRW KVAAMIPGKTV D
Sbjct: 3   ILSPASYLSSTNWLLEESKNTKWTPAENKAFENALAVYDEDTPDRWHKVAAMIPGKTVGD 62

Query: 67  VIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNNHGYDGFKHPYAVGGKRSSSVRP 126
           VIKQYKELE D+S IEAGLIP+PGY ++SPFTL+WV+ +GYDGFK  Y +GGKRSS+ RP
Sbjct: 63  VIKQYKELELDVSYIEAGLIPVPGY-STSPFTLDWVDGNGYDGFKQSYGLGGKRSSTGRP 121

Query: 127 AEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLS 186
           A+ ERKKGVPWTEEEHKLFL+GLKK+GKGDWRNISRNFV SRTPTQVASHAQKYFIRQLS
Sbjct: 122 ADQERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVVSRTPTQVASHAQKYFIRQLS 181

Query: 187 GGKDKRRASIHDITTVNLNETRTSSPDTQRAPSPEQVTSGLSQQQPNCGGALSRTNFQWH 246
           GGKDKRRASIHDITTVNLN+ RT SPD +R PSP+Q   G   QQPN   A+ RT+FQW+
Sbjct: 182 GGKDKRRASIHDITTVNLNDARTPSPDNKR-PSPDQ--PGAISQQPNS-AAMPRTHFQWN 237

Query: 247 QPNNGATTAFGSTQGNMFMTSPYGINSYGIKMPGQNLQRDAVHEPYFGLQNLAFQM---- 302
           QPN G T AF ST  NMFM++PYGI+SYG+KM GQNL R AVH+ Y   Q + FQM    
Sbjct: 238 QPNGGGTLAFNSTNANMFMSAPYGISSYGLKMQGQNLPRGAVHDSYIRQQTMGFQMPSAH 297

Query: 303 QFPQG 307
            +P G
Sbjct: 298 HYPHG 302

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|237664615|gb|ACR09746.1| DIV1A protein [Heptacodium miconioides]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/308 (68%), Positives = 247/308 (80%), Gaps = 16/308 (5%)

Query: 1   MKWETEVISPASYISSSNWLLEESKST-RWTAAENKMFENALAVYDKDSPDRWQKVAAMI 59
           M+W  E++SPASY S+S++LLEESKST RWT  ENK+FENALA +DK++PDRW KVAAM+
Sbjct: 1   MRWGMEILSPASYHSNSSYLLEESKSTTRWTIVENKLFENALAKFDKETPDRWHKVAAMV 60

Query: 60  PGKTVVDVIKQYKELEADISNIEAGLIPLPGYG-NSSPFTLEWVNN-HGYDGFKHPYAVG 117
           PGKTV DV KQYKELE D+S+IEAGL+P+PGY  N+SPFTLEW NN HG+DGFK     G
Sbjct: 61  PGKTVEDVKKQYKELEDDVSSIEAGLVPIPGYNTNTSPFTLEWGNNFHGFDGFK----PG 116

Query: 118 GKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHA 177
           GKRSSS RP E ERKKGVPWTEEEHKLFLLGLKK+GKGDWRNISRN+V +RTPTQVASHA
Sbjct: 117 GKRSSSTRPCEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNYVITRTPTQVASHA 176

Query: 178 QKYFIRQLSGGKDKRRASIHDITTVNLNETRTSSPDTQRAPSPEQVTSGLSQQQPNCGGA 237
           QKYFIRQLSGGKDKRRASIHDITTVNLNE +T   + +  PSPE+ ++GLS QQPN    
Sbjct: 177 QKYFIRQLSGGKDKRRASIHDITTVNLNENQTPQ-EEKIVPSPEEHSTGLS-QQPNTA-- 232

Query: 238 LSRTNFQWHQPNNGATTA-FGSTQGNMFMTSPYGI-NSYGIKMPGQNLQRDAVHEPYFGL 295
              T+FQW+ PN+G     F  T  NMFM  PYG+ N+YG+KM GQN QR+ V E + G 
Sbjct: 233 ---TSFQWNHPNSGKVAMDFNQTCENMFMPPPYGVLNTYGLKMQGQNQQRNVVQESFLGP 289

Query: 296 QNLAFQMQ 303
           Q++ FQMQ
Sbjct: 290 QSMVFQMQ 297

Source: Heptacodium miconioides

Species: Heptacodium miconioides

Genus: Heptacodium

Family: Caprifoliaceae

Order: Dipsacales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566155|ref|XP_003551300.1| PREDICTED: uncharacterized protein LOC100784163 [Glycine max]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/317 (65%), Positives = 243/317 (76%), Gaps = 18/317 (5%)

Query: 1   MKWETEVISPAS-YISSSNWLLEESKS--TRWTAAENKMFENALAVYDKDSPDRWQKVAA 57
           MKWE E++ PAS Y+ +SNWLL+++++  T+WT AENK+FENALAVYD+D+PDRW KVA 
Sbjct: 1   MKWEMEILPPASPYMYNSNWLLDDNRTNNTKWTPAENKLFENALAVYDRDTPDRWHKVAE 60

Query: 58  MIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGN----SSPFTLEWVNNH-GYD-GFK 111
           MIPGKTV+DV+KQYKELEAD+ +IEAGLIP+PGY +    +SPFTL+WVN    YD GFK
Sbjct: 61  MIPGKTVMDVVKQYKELEADVCDIEAGLIPIPGYSSGTTTTSPFTLDWVNTSPAYDDGFK 120

Query: 112 HPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPT 171
               +  KRSSS RP E ERKKGVPWTEEEHKLFLLGLKK+GKGDWRNISRN+V +RTPT
Sbjct: 121 ---GITAKRSSSGRPLEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNYVITRTPT 177

Query: 172 QVASHAQKYFIRQLSGGKDKRRASIHDITTVNLNE-TRTSSPDTQRAPSPEQVTSGLSQQ 230
           QVASHAQKYFIRQLSGGKDKRRASIHDITTVNL E TRTSS +++R+ SP+        Q
Sbjct: 178 QVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTRTSSDESKRSASPQNSAMLSRHQ 237

Query: 231 QPNCGGALSRTNFQW-HQPNNGATTAFGSTQGNMFMTSPYGINSYGIKMPGQNLQRDAVH 289
           Q N   A S  NFQW  QPN G   A       +FM SPYG+NSYG KM GQNL R ++H
Sbjct: 238 QLNSNAASSGLNFQWSDQPNAGVAMALNPAHEQVFM-SPYGLNSYGFKMQGQNLHRSSLH 296

Query: 290 E-PYFGLQ--NLAFQMQ 303
           E  Y G Q  N+ FQMQ
Sbjct: 297 ESSYLGPQTPNMVFQMQ 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75330977|sp|Q8S9H7.1|DIV_ANTMA RecName: Full=Transcription factor DIVARICATA gi|18874263|gb|AAL78741.1| MYB-like transcription factor DIVARICATA [Antirrhinum majus]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/302 (63%), Positives = 240/302 (79%), Gaps = 8/302 (2%)

Query: 6   EVISPASYISSSNWLLEESKST-RWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTV 64
           E+++P+SY SSS+W LEES+ST RWTAAENK FENALAV+D+++P+RW++VA  +PGKTV
Sbjct: 2   EILAPSSYFSSSSWFLEESRSTTRWTAAENKAFENALAVFDENTPNRWERVAERVPGKTV 61

Query: 65  VDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNNHGYDGFKHPYAVGGKRSSSV 124
            DV++QYKELE D+S+IEAG +P+PGY  SSPFTLEW + HG+DGFK  Y  GG++SSS 
Sbjct: 62  GDVMRQYKELEDDVSSIEAGFVPVPGYSTSSPFTLEWGSGHGFDGFKQSYGTGGRKSSSG 121

Query: 125 RPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQ 184
           RP+E ERKKGVPWTEEEHKLFL+GLKK+GKGDWRNISRNFV +RTPTQVASHAQKYFIRQ
Sbjct: 122 RPSEQERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQ 181

Query: 185 LSGGKDKRRASIHDITTVNLNETRTSSPDTQRAP-SPEQVTSGLSQQQPNCGGALSRTNF 243
           LSGGKDKRRASIHDITTVNL++ +T SPD ++ P SP+   +    QQ     ++ +  F
Sbjct: 182 LSGGKDKRRASIHDITTVNLSDNQTPSPDNKKPPSSPDHSMA----QQQTSSTSIHKLPF 237

Query: 244 QWHQPNNGATTAFGST--QGNMFMTSPYGINSYGIKMPGQNLQRDAVHEPYFGLQNLAFQ 301
           QW Q +N     F S+   GNMF ++P+G+NSYG KM GQ +QR    + Y G QN+AFQ
Sbjct: 238 QWDQTSNETIMGFASSGHHGNMFQSNPFGMNSYGFKMQGQQMQRGGFCDTYLGSQNMAFQ 297

Query: 302 MQ 303
           MQ
Sbjct: 298 MQ 299

Source: Antirrhinum majus

Species: Antirrhinum majus

Genus: Antirrhinum

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523595|ref|XP_004168809.1| PREDICTED: transcription factor DIVARICATA-like isoform 1 [Cucumis sativus]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/319 (63%), Positives = 248/319 (77%), Gaps = 16/319 (5%)

Query: 1   MKWETEVIS-PASYISSSNWLLEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMI 59
           MKWE E++S P+S +S+ +W   + K++RWT AENKMFENALA++D D+PDRWQKVA+MI
Sbjct: 1   MKWEMEILSSPSSLVSTMSWSSGDGKASRWTVAENKMFENALAIFDTDTPDRWQKVASMI 60

Query: 60  PGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNNHGYDGFKHPYAVGGK 119
           PGKTV DVI+QYKELEAD+S+IEAGLIP+PGY ++S FTL+WVN+H YDGFK  Y + GK
Sbjct: 61  PGKTVGDVIRQYKELEADVSSIEAGLIPIPGY-DTSQFTLDWVNSHSYDGFKQSYGLIGK 119

Query: 120 RSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQK 179
           RSS  R A+ ERKKGVPWTEEEHKLFL+GLKK+GKGDWRNISRNFV +RTPTQVASHAQK
Sbjct: 120 RSSG-RSADQERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQK 178

Query: 180 YFIRQLSGGKDKRRASIHDITTVNLNETRTSSPDTQRAPSPEQVTSGLSQQQPNCGGALS 239
           YFIRQLSGGKDKRRASIHDITTVNLN+TR+ SP+ +++ SPE  T  +  +  N    + 
Sbjct: 179 YFIRQLSGGKDKRRASIHDITTVNLNDTRSPSPENKKSVSPEHAT--VLPRHSNPSSTVP 236

Query: 240 RTNF----QWHQPNNGATTAFGSTQGNMFMT-SPYGINSY--GIKMPGQNLQRDAVHEPY 292
           R  F    Q    NNGA   F  + GN+FM+   +G+NSY  GI++P  +LQ+ AV+EP+
Sbjct: 237 RAAFNWNQQQQHNNNGAALVFNHSNGNVFMSPGAFGVNSYAAGIRLPEHHLQKGAVNEPF 296

Query: 293 FGLQNLAFQMQ----FPQG 307
            G QN+ FQMQ    FP G
Sbjct: 297 IGPQNMVFQMQAGHCFPHG 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|237664619|gb|ACR09748.1| DIV3B protein [Heptacodium miconioides]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/304 (62%), Positives = 231/304 (75%), Gaps = 6/304 (1%)

Query: 6   EVISPASYISSSNWLLEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVV 65
           E++SPASY+ +SNWL EE+K T+WT+ ENK FENALA++DKD+PDRW  VAAMIPGKTV 
Sbjct: 12  EILSPASYLRNSNWLFEEAKETKWTSEENKRFENALALFDKDTPDRWYNVAAMIPGKTVR 71

Query: 66  DVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNNHGYDGFKHPYAVGGKRSSSVR 125
           DVIKQY+ELE D+S+IEAGLIP+PGY  S  FTLEW+NN  + G K  Y  G KRSSS R
Sbjct: 72  DVIKQYRELEEDVSDIEAGLIPIPGYTTSDSFTLEWMNNQEFHGLKQFYGPGLKRSSSTR 131

Query: 126 PAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQL 185
           P++ ERKKGVPWTEEEH+ FLLGLKK+GKGDWRNISRN+VT+RTPTQVASHAQKY+IRQL
Sbjct: 132 PSDQERKKGVPWTEEEHRXFLLGLKKYGKGDWRNISRNYVTTRTPTQVASHAQKYYIRQL 191

Query: 186 SGGKDKRRASIHDITTVNLNETRTSSPDTQRAPSPEQVTS-----GLSQQQPNCGGALSR 240
           SGGKDKRR+SIHDITTVNL ++++ SPD  + PS    T+        QQ  N  G + +
Sbjct: 192 SGGKDKRRSSIHDITTVNLIDSKSPSPDNNKQPSLGHSTAVLQQQPQLQQNSNMSG-MVK 250

Query: 241 TNFQWHQPNNGATTAFGSTQGNMFMTSPYGINSYGIKMPGQNLQRDAVHEPYFGLQNLAF 300
             + W  PN GAT AF     ++ M++P+G  SYG+KM   NLQR ++H P FG  N  F
Sbjct: 251 ALYDWGGPNQGATMAFDLLNSSLMMSAPHGTPSYGMKMHDHNLQRGSLHGPEFGPCNSIF 310

Query: 301 QMQF 304
           QMQF
Sbjct: 311 QMQF 314

Source: Heptacodium miconioides

Species: Heptacodium miconioides

Genus: Heptacodium

Family: Caprifoliaceae

Order: Dipsacales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539533|ref|XP_003538252.1| PREDICTED: uncharacterized protein LOC778181 [Glycine max]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/318 (65%), Positives = 240/318 (75%), Gaps = 20/318 (6%)

Query: 1   MKWETEVISPAS-YISSSNWLLEESKS---TRWTAAENKMFENALAVYDKDSPDRWQKVA 56
           MKWE E++ PAS Y  +SNWLL+++++   T+WT AENK+FENALAVYDKD+PDRW KVA
Sbjct: 1   MKWEMEILPPASPYTYNSNWLLDDNRTNNNTKWTPAENKLFENALAVYDKDTPDRWHKVA 60

Query: 57  AMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGY---GNSSPFTLEWVNNHGYDGFKHP 113
            MIPGKTV+DV+KQYKELEAD+ +IEAGLI +PGY     +SPFTL+WVN    DGFK  
Sbjct: 61  EMIPGKTVMDVVKQYKELEADVCDIEAGLISIPGYRSTTTTSPFTLDWVNPAYGDGFK-- 118

Query: 114 YAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQV 173
             +  KRSSS RP E ERKKGVPWTEEEHKLFLLGLKK+GKGDWRNISRN+V +RTPTQV
Sbjct: 119 -GLTAKRSSSGRPPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNYVITRTPTQV 177

Query: 174 ASHAQKYFIRQLSGGKDKRRASIHDITTVNLNE-TRTSSPDTQRAPSPEQVT----SGLS 228
           ASHAQKYFIRQLSGGKDKRRASIHDITTVNL E TRTSS +++R+ SP+  T        
Sbjct: 178 ASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTRTSSDESKRSTSPQHSTILSHQQQQ 237

Query: 229 QQQPNCGGALSRTNFQW-HQPNNGATTAFGSTQGNMFMTSPYGINSYGIKMPGQNLQRDA 287
           QQQPN   A S  N QW +QPN G           +FM SPYG+NSYG KM GQNL R +
Sbjct: 238 QQQPNSSVASSGLNLQWSNQPNAGVAMPLNPAHEQVFM-SPYGLNSYGFKMHGQNLHRSS 296

Query: 288 VHE-PYFGLQ--NLAFQM 302
           VHE  Y G Q  N+ FQM
Sbjct: 297 VHESSYLGPQTPNMVFQM 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
UNIPROTKB|Q8S9H7	307	DIVARICATA "Transcription fact	0.957	0.957	0.592	3.3e-95
TAIR|locus:2042872	298	AT2G38090 [Arabidopsis thalian	0.905	0.932	0.516	4.8e-71
TAIR|locus:2154508	288	AT5G58900 [Arabidopsis thalian	0.869	0.927	0.531	3.5e-68
TAIR|locus:2150149	267	AT5G01200 [Arabidopsis thalian	0.713	0.820	0.510	3.5e-52
TAIR|locus:2166459	277	AT5G05790 [Arabidopsis thalian	0.657	0.729	0.490	9.8e-48
TAIR|locus:2074723	263	AT3G11280 [Arabidopsis thalian	0.599	0.699	0.545	1.6e-47
TAIR|locus:2159607	298	AT5G08520 [Arabidopsis thalian	0.684	0.704	0.389	1.2e-33
TAIR|locus:2175478	215	AT5G04760 [Arabidopsis thalian	0.622	0.888	0.378	1.4e-30
TAIR|locus:2171711	337	AT5G23650 [Arabidopsis thalian	0.837	0.762	0.318	8.4e-26
TAIR|locus:2028461	314	AT1G49010 [Arabidopsis thalian	0.654	0.640	0.374	3.4e-22

UNIPROTKB|Q8S9H7 DIVARICATA "Transcription factor DIVARICATA" [Antirrhinum majus (taxid:4151)]

 Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
 Identities = 179/302 (59%), Positives = 226/302 (74%)

Query:     6 EVISPASYISSSNWLLEESKST-RWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTV 64
             E+++P+SY SSS+W LEES+ST RWTAAENK FENALAV+D+++P+RW++VA  +PGKTV
Sbjct:     2 EILAPSSYFSSSSWFLEESRSTTRWTAAENKAFENALAVFDENTPNRWERVAERVPGKTV 61

Query:    65 VDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNNHGYDGFKHPYAVGGKRSSSV 124
              DV++QYKELE D+S+IEAG +P+PGY  SSPFTLEW + HG+DGFK  Y  GG++SSS 
Sbjct:    62 GDVMRQYKELEDDVSSIEAGFVPVPGYSTSSPFTLEWGSGHGFDGFKQSYGTGGRKSSSG 121

Query:   125 RPAEHERKKGVPWTXXXXXXXXXXXXXXXXXDWRNISRNFVTSRTPTQVASHAQKYFIRQ 184
             RP+E ERKKGVPWT                 DWRNISRNFV +RTPTQVASHAQKYFIRQ
Sbjct:   122 RPSEQERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQ 181

Query:   185 LSGGKDKRRASIHDITTVNLNETRTSSPDTQRAPS-PEQVTSGLSQQQPNCGGALSRTNF 243
             LSGGKDKRRASIHDITTVNL++ +T SPD ++ PS P+     ++QQQ +   ++ +  F
Sbjct:   182 LSGGKDKRRASIHDITTVNLSDNQTPSPDNKKPPSSPDH---SMAQQQTS-STSIHKLPF 237

Query:   244 QWHQPNNGATTAFGST--QGNMFMTSPYGINSYGIKMPGQNLQRDAVHEPYFGLQNLAFQ 301
             QW Q +N     F S+   GNMF ++P+G+NSYG KM GQ +QR    + Y G QN+AFQ
Sbjct:   238 QWDQTSNETIMGFASSGHHGNMFQSNPFGMNSYGFKMQGQQMQRGGFCDTYLGSQNMAFQ 297

Query:   302 MQ 303
             MQ
Sbjct:   298 MQ 299

GO:0009908 "flower development" evidence=IMP

GO:0048262 "determination of dorsal/ventral asymmetry" evidence=IMP

TAIR|locus:2042872 AT2G38090 [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 153/296 (51%), Positives = 192/296 (64%)

Query:     6 EVISPASYISSSNWLLEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVV 65
             EV+SPA+Y+ +SNWL +E++ T+WTA ENK FENALA YDKD+PDRW +VAAM+PGKTV 
Sbjct:     6 EVMSPATYLETSNWLFQENRGTKWTAEENKKFENALAFYDKDTPDRWSRVAAMLPGKTVG 65

Query:    66 DVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNNHGY---DGFK-HPY---AVGG 118
             DVIKQY+ELE D+S+IEAGLIP+PGY + S FTL+W    G    +GF  + Y   A GG
Sbjct:    66 DVIKQYRELEEDVSDIEAGLIPIPGYASDS-FTLDWGGYDGASGNNGFNMNGYYFSAAGG 124

Query:   119 KRSSSVRPAEHERKKGVPWTXXXXXXXXXXXXXXXXXDWRNISRNFVTSRTPTQVASHAQ 178
             KR S+ R AEHERKKGVPWT                 DWRNI+RNFVT+RTPTQVASHAQ
Sbjct:   125 KRGSAARTAEHERKKGVPWTEEEHRQFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQ 184

Query:   179 KYFIRQLSGGKDKRRASIHDITTVNLNETRTSSPDTQRAPSPEQVTSGLSQQQPNCGGAL 238
             KYFIRQ++GGKDKRR+SIHDITTVN+       PD+  A + +  T+      P+ GG  
Sbjct:   185 KYFIRQVNGGKDKRRSSIHDITTVNI-------PDSPDAAAADNATANAPCSPPSVGGNQ 237

Query:   239 SRTNFQWHQPNNGATTAFGSTQGNMFMTSPYGINS--YGIKMPGQNLQRDAVHEPY 292
               T+ +W        TA      N F  +  G++S  Y  K+  Q+    +  E Y
Sbjct:   238 RETS-EWEGQTLYDETAAAFYNQNAFSETLLGMSSTPYMAKLQEQSFLNASQFESY 292

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2154508 AT5G58900 [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 158/297 (53%), Positives = 190/297 (63%)

Query:     6 EVISPA-SYISSSNWLLEESKS--------TRWTAAENKMFENALAVYDKDSPDRWQKVA 56
             EV+ P+ S++S  NWL+EE+KS          WTAAENK FENALAVYD ++PDRWQKVA
Sbjct:     2 EVMRPSTSHVSGGNWLMEETKSGVAASGEGATWTAAENKAFENALAVYDDNTPDRWQKVA 61

Query:    57 AMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNNHG-YDGFKHPYA 115
             A+IPGKTV DVI+QY +LEAD+S+IEAGLIP+PGY  S PFTL+W    G  +GFK  + 
Sbjct:    62 AVIPGKTVSDVIRQYNDLEADVSSIEAGLIPVPGYITSPPFTLDWAGGGGGCNGFKPGHQ 121

Query:   116 VGGKRSSSVRPAEHERKKGVPWTXXXXXXXXXXXXXXXXXDWRNISRNFVTSRTPTQVAS 175
             V  KRS + R  E ERKKGVPWT                 DWRNISRNFV +RTPTQVAS
Sbjct:   122 VCNKRSQAGRSPELERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVAS 181

Query:   176 HAQKYFIRQLSGGKDKRRASIHDITTVNLNETRTSSPDTQRAPSPEQVTSGLSQQQPNCG 235
             HAQKYFIRQLSGGKDKRRASIHDITTVNL E   +S +T ++     +  G   Q+    
Sbjct:   182 HAQKYFIRQLSGGKDKRRASIHDITTVNLEEE--ASLETNKS----SIVVG--DQRSRL- 232

Query:   236 GALSRTNFQWHQPNNGATTA--FGSTQGNMFMTSPYGINSYGIKMPGQNLQRDAVHE 290
                  T F W+Q +N  T A  F  T GN       G++SYG  M G     D+ ++
Sbjct:   233 -----TAFPWNQTDNNGTQADAFNITIGNAIS----GVHSYGQVMIGGYNNADSCYD 280

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2150149 AT5G01200 [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 118/231 (51%), Positives = 146/231 (63%)

Query:    15 SSSNWLLEESKSTRWTAAENKMFENALAVYD-KDSPDRWQKVAAMIPGKTVVDVIKQYKE 73
             +++NW+ +E +   WTA ENK FE ALA  D KD+ + W K+A +IPGKTV DVIK+YKE
Sbjct:    16 ANTNWIFQEVREATWTAEENKRFEKALAYLDDKDNLESWSKIADLIPGKTVADVIKRYKE 75

Query:    74 LEADISNIEAGLIPLPGYGN--SSPFTLEWVNNHGYDGFKHPYAVGGKRSSSVR------ 125
             LE D+S+IEAGLIP+PGYG   SS    ++        + + Y VGGKRSS         
Sbjct:    76 LEDDVSDIEAGLIPIPGYGGDASSAANSDYFFGLENSSYGYDYVVGGKRSSPAMTDCFRS 135

Query:   126 PA-EHERKKGVPWTXXXXXXXXXXXXXXXXXDWRNISRNFVTSRTPTQVASHAQKYFIRQ 184
             P  E ERKKGVPWT                 DWRNI+++FVT+RTPTQVASHAQKYF+RQ
Sbjct:   136 PMPEKERKKGVPWTEDEHLRFLMGLKKYGKGDWRNIAKSFVTTRTPTQVASHAQKYFLRQ 195

Query:   185 LSGGKDKRRASIHDITTVNLNETRTSSPDTQR--APSPEQVTSGLSQQQPN 233
             L+ GKDKRR+SIHDITTVN+ +   S+  T    A SP    S     QPN
Sbjct:   196 LTDGKDKRRSSIHDITTVNIPDADASATATTADVALSPTPANSFDVFLQPN 246

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2166459 AT5G05790 [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 106/216 (49%), Positives = 140/216 (64%)

Query:     6 EVISPA-SYISSSN--WLLEES---KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMI 59
             E + P  S++ +S+  ++++E    +S+ WT  ENK FE ALAVY  D+PDRW KVAAMI
Sbjct:     2 ETLHPLLSHVPTSDHRFVVQEMMCLQSSSWTKEENKKFERALAVYADDTPDRWFKVAAMI 61

Query:    60 PGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWV-NNHGYDGFKHPYAVGG 118
             PGKT+ DV++QY +LE D+ +IEAGL+P+PGY + +P   + V +   +D ++       
Sbjct:    62 PGKTISDVMRQYSKLEEDLFDIEAGLVPIPGYRSVTPCGFDQVVSPRDFDAYR------- 114

Query:   119 KRSSSVRPAEHERKKGVPWTXXXXXXXXXXXXXXXXXDWRNISRNFVTSRTPTQVASHAQ 178
             K  +  R  + +R+KGVPWT                 DWRNISRNFV S+TPTQVASHAQ
Sbjct:   115 KLPNGARGFDQDRRKGVPWTEEEHRRFLLGLLKYGKGDWRNISRNFVGSKTPTQVASHAQ 174

Query:   179 KYFIRQLSGGKDKRRASIHDITTVNLNETRTSSPDT 214
             KY+ RQLSG KDKRR SIHDITTVNL     S P +
Sbjct:   175 KYYQRQLSGAKDKRRPSIHDITTVNLLNANLSRPSS 210

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2074723 AT3G11280 [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 108/198 (54%), Positives = 126/198 (63%)

Query:     8 ISPASYISSSNWLLEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDV 67
             IS   ++      L  S S  WT  ENKMFE ALA+Y +DSPDRW KVA+MIPGKTV DV
Sbjct:    12 ISDHRFVVQEMVSLHSSSSGSWTKEENKMFERALAIYAEDSPDRWFKVASMIPGKTVFDV 71

Query:    68 IKQYKELEADISNIEAGLIPLPGY-GNSSPFTLEWVNNHGYDGFKHPYAVGGKRSSSVRP 126
             +KQY +LE D+ +IEAG +P+PGY   SSP         G+D       +  KR S  R 
Sbjct:    72 MKQYSKLEEDVFDIEAGRVPIPGYPAASSPL--------GFDT-----DMCRKRPSGARG 118

Query:   127 AEHERKKGVPWTXXXXXXXXXXXXXXXXXDWRNISRNFVTSRTPTQVASHAQKYFIRQLS 186
             ++ +RKKGVPWT                 DWRNISRNFV S+TPTQVASHAQKY+ RQLS
Sbjct:   119 SDQDRKKGVPWTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKYYQRQLS 178

Query:   187 GGKDKRRASIHDITTVNL 204
             G KDKRR SIHDITT NL
Sbjct:   179 GAKDKRRPSIHDITTGNL 196

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2159607 AT5G08520 [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 86/221 (38%), Positives = 119/221 (53%)

Query:    22 EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNI 81
             E S  + W+  ++  FE ALA    +S +RW+K+AA +PGK+V  + + Y+ L  D++ I
Sbjct:     5 EVSDGSVWSREDDIAFERALANNTDESEERWEKIAADVPGKSVEQIKEHYELLVEDVTRI 64

Query:    82 EAGLIPLPGYGNSSPFTLEWVNNH-GYDGFKHPYA----VGGKRSSSVRPAEHERKKGVP 136
             E+G +PLP YG  SP   E  N H G +G           G    +    ++ ER+KG+ 
Sbjct:    65 ESGCVPLPAYG--SP---EGSNGHAGDEGASSKKGGNSHAGESNQAGKSKSDQERRKGIA 119

Query:   137 WTXXXXXXXXXXXXXXXXXDWRNISRNFVTSRTPTQVASHAQKYFIRQLSGGKDKRRASI 196
             WT                 DWR+ISRNFV +RTPTQVASHAQKYFIR  S  KD+RR+SI
Sbjct:   120 WTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSI 179

Query:   197 HDITTV-NLNETRTSSPDTQRAPSPEQVTSGLSQQQPNCGG 236
             HDIT+V N + +    P T +  S     +  +   P   G
Sbjct:   180 HDITSVGNADVSTPQGPITGQNNSNNNNNNNNNNSSPAVAG 220

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2175478 AT5G04760 [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 81/214 (37%), Positives = 118/214 (55%)

Query:    26 STRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGL 85
             S++WT +E+KMFE AL ++ + SP+RW+++A  +  K+  +V + Y+ L  D+  I++G 
Sbjct:     3 SSQWTRSEDKMFEQALVLFPEGSPNRWERIADQLH-KSAGEVREHYEVLVHDVFEIDSGR 61

Query:    86 IPLPGYGNSSPFTLEWVNNHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTXXXXXXX 145
             + +P Y + S          G+D         G+ S   +  E ERK+G PWT       
Sbjct:    62 VDVPDYMDDSAAAAA-----GWDS-------AGQISFGSKHGESERKRGTPWTENEHKLF 109

Query:   146 XXXXXXXXXXDWRNISRNFVTSRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTV--- 202
                       DWR+ISRN V +RTPTQVASHAQKYF+RQ S  K+++R+SIHDITTV   
Sbjct:   110 LIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDAT 169

Query:   203 ------NLNETRTSSPDTQRAPSPEQVTSGLSQQ 230
                   N++ T       Q AP  +Q+ S   QQ
Sbjct:   170 LAMPGSNMDWTGQHGSPVQ-APQQQQIMSEFGQQ 202

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2171711 AT5G23650 [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 87/273 (31%), Positives = 124/273 (45%)

Query:    22 EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNI 81
             E S  + W+  ++  FE ALA+Y+  +  RW+K+A ++PGKT+  VI+ Y  L  D+  I
Sbjct:     6 EISVGSSWSKDDDIAFEKALAIYNDKTEIRWKKIATVVPGKTLEQVIEHYNILARDVMLI 65

Query:    82 EAGLIPLPGYGNSSPFTLEWVNNHGYDGFKHPYAVGG---KRSSSVR---PAEHERKKGV 135
             E+G + LP Y +   F  E   NH   G +     GG   K  S  +     + +R++GV
Sbjct:    66 ESGCVRLPDYDD---FLEE--PNHNAFGKERSILEGGNDRKYESKHKGKSKLKQKRRRGV 120

Query:   136 PWTXXXXXXXXXXXXXXXXXDWRNISRNFVTSRTPTQVASHAQKYFIRQLSGGKDKRRAS 195
             PW                  DWR+ISR+ V +RT TQVASHAQKYF    S  K ++R S
Sbjct:   121 PWKPFEHRQFLHGLKKYGKGDWRSISRHCVVTRTSTQVASHAQKYFAHINSEDKKRKRPS 180

Query:   196 IHDITTVNLNETRTSS-PDT-QRAPSPEQVTSGLSQQQPNCGGALSRTNFQWHQP--NNG 251
             IHDIT        T   P T Q+  +     S     Q     +L    +  H    N  
Sbjct:   181 IHDITIAENKSISTKQRPITWQKINNNGATASNTQANQTTLQPSLDIPIYGTHNNIWNAQ 240

Query:   252 ATTAFGS-TQGNMFMTSPYGINSYGIKMPGQNL 283
             AT      +Q +    +P   N+     P  N+
Sbjct:   241 ATQVISQPSQNHPTYDAPIIWNTQVASQPSANI 273

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2028461 AT1G49010 [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 79/211 (37%), Positives = 101/211 (47%)

Query:    22 EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNI 81
             EE    +W    + +   AL    K      + V A+  G+  +      K L  D +  
Sbjct:    27 EEITEDQWNKMSSMVPSKALEEVKKHYQILLEDVKAIENGQVPLPRYHHRKGLIVDEA-A 85

Query:    82 EAGLIPLPGYGNSSPFTLEWVNNHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTXXX 141
              A   P     +SS  + E   N G  G     +  G RS   R AE ER+KG+PWT   
Sbjct:    86 AAATSPANRDSHSSGSS-EKKPNPGTSGIS---SSNGGRSGGSR-AEQERRKGIPWTEEE 140

Query:   142 XXXXXXXXXXXXXXDWRNISRNFVTSRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITT 201
                           DWR+ISRNFV SRTPTQVASHAQKYFIR  S  +D+RR+SIHDITT
Sbjct:   141 HRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITT 200

Query:   202 VNLNETRTSSPDTQRAPSPEQVTSGLSQQQP 232
             VN N+    +   Q+   P+ V    +Q QP
Sbjct:   201 VN-NQAPAVTGGGQQ---PQVVKHRPAQPQP 227

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0016556 "mRNA modification" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S9H7	DIV_ANTMA	No assigned EC number	0.6390	0.9576	0.9576	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	307
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	1e-14
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-10
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	2e-10
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	4e-10
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-06
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	3e-06
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	4e-06
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-04
cd11661	46	cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Doma	5e-04

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 67.0 bits (164), Expect = 1e-14
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 132 KKGVPWTEEEHKLFLLGLKKHGKGDW---RNISRNFVTSR-TPTQVASHAQKYFIRQ 184
           K  V WTE+ H  FL  ++K G  DW   + I    V    T  QVASH QKY ++Q
Sbjct: 1   KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 134 GVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIR 183
              WTEEE +L +  +KK+GK +W  I++     RT  Q     +     
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 54.8 bits (133), Expect = 2e-10
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 136 PWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKY 180
           PWT EE +L +  +KKHG G+W  I+++    RT  Q  +    Y
Sbjct: 3   PWTPEEDELLIEAVKKHGNGNWSKIAKHLPG-RTDNQCKNRWNNY 46

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 54.1 bits (131), Expect = 4e-10
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 136 PWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF 181
           PWTEEE +L L  +KK+GK +W  I++     RTP Q     +   
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 28 RWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKEL 74
           WT  E+++   A+  Y K+    W+K+A  +PG+T     ++++ L
Sbjct: 1  PWTEEEDELLLEAVKKYGKN---NWEKIAKELPGRTPKQCRERWRNL 44

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 135 VPWTEEEHKLFLLGLKKHGKGDWRNISR--NFVTSRTPTQ 172
             WT+EE +  + G++K+G G+W  I +   FV +RT   
Sbjct: 1   RKWTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVD 40

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKEL 74
            WT  E+++    +  Y K+    W+K+A  +PG+T     ++++ L
Sbjct: 2  GEWTEEEDELLIELVKKYGKN---NWEKIAKELPGRTAEQCRERWRNL 46

Length = 49

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 28 RWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQY 71
           WT  E+++   A+  +       W K+A  +PG+T      ++
Sbjct: 3  PWTPEEDELLIEAVKKHGNG---NWSKIAKHLPGRTDNQCKNRW 43

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|212559 cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Domain of MTA3 and related proteins

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 137 WTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQV 173
           W+E E KLF  GL+K+GK D+ +I ++F+  ++  ++
Sbjct: 2   WSESEAKLFEEGLRKYGK-DFHDIRQDFLPWKSVGEL 37

Members in this SANT/myb family include domains found in mouse metastasis-associated protein 3 (MTA3) proteins and arginine-glutamic dipeptide (RERE) repeats proteins. SANT (SWI3, ADA2, N-CoR and TFIIIB) DNA-binding domains are a diverse set of proteins that share a common 3 alpha-helix bundle. MTA3 has been shown to interact with nucleosome remodeling and deacetylase (NuRD) proteins CHD4 and HDAC1, and the core cohesin complex protein RAD21 in the ovary, and regulate G2/M progression in proliferating granulosa cells. RERE belongs to the atrophin family and has been identified as a nuclear receptor corepressor; altered expression levels of RERE are associated with cancer in humans while mutations of Rere in mice cause failure in closing the anterior neural tube and fusion of the telencephalic and optic vesicles during embryogenesis. Length = 46

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	307
PLN03212	249	Transcription repressor MYB5; Provisional	99.86
PLN03091	459	hypothetical protein; Provisional	99.85
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.77
KOG0724	335	consensus Zuotin and related molecular chaperones	99.55
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.53
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.53
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.44
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.42
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.23
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.2
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.13
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.1
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.99
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	98.93
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.88
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	98.84
PLN03212	249	Transcription repressor MYB5; Provisional	98.83
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	98.73
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.72
PLN03091	459	hypothetical protein; Provisional	98.59
KOG0048	238	consensus Transcription factor, Myb superfamily [T	98.5
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.49
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	98.42
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.67
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	97.67
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.65
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.61
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.34
KOG4167	907	consensus Predicted DNA-binding protein, contains	97.32
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.32
KOG1194	534	consensus Predicted DNA-binding protein, contains	97.18
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	97.17
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.16
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.06
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	96.56
KOG0051	607	consensus RNA polymerase I termination factor, Myb	96.5
KOG0385	971	consensus Chromatin remodeling complex WSTF-ISWI,	96.39
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.38
KOG4329	445	consensus DNA-binding protein [General function pr	96.26
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.96
COG5147	512	REB1 Myb superfamily proteins, including transcrip	95.73
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	95.62
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	95.0
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	94.43
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	94.32
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	94.03
KOG4329	445	consensus DNA-binding protein [General function pr	92.39
PLN03162	526	golden-2 like transcription factor; Provisional	92.14
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	91.34
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	89.66
KOG4468	782	consensus Polycomb-group transcriptional regulator	88.7
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	88.44
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	88.19
KOG4167	907	consensus Predicted DNA-binding protein, contains	87.62
PRK13923	170	putative spore coat protein regulator protein YlbO	87.62
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	87.47
KOG2656	445	consensus DNA methyltransferase 1-associated prote	86.94
KOG1878	1672	consensus Nuclear receptor coregulator SMRT/SMRTER	85.91
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	85.83
KOG4468	782	consensus Polycomb-group transcriptional regulator	84.13
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	83.02
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	82.93
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	82.77
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	81.19

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.86  E-value=1.1e-21  Score=180.91  Aligned_cols=111  Identities=16%  Similarity=0.230  Sum_probs=96.0

Q ss_pred             CCcccCCCccccCCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhC-CCCCHHHHHHHHHHHHHhhhhhhhcCCCC
Q 021816           10 PASYISSSNWLLEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMI-PGKTVVDVIKQYKELEADISNIEAGLIPL   88 (307)
Q Consensus        10 p~~~~~~~~w~~~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~v-PGRT~~qc~~rY~~L~~dV~~IEsG~v~~   88 (307)
                      |||+.       ..-.++.||+|||++|.++|++|+..   +|..||..+ ++||.+||++||...+.            
T Consensus        16 pcc~K-------~glKRg~WT~EEDe~L~~lV~kyG~~---nW~~IAk~~g~gRT~KQCReRW~N~L~------------   73 (249)
T PLN03212         16 PCCTK-------MGMKRGPWTVEEDEILVSFIKKEGEG---RWRSLPKRAGLLRCGKSCRLRWMNYLR------------   73 (249)
T ss_pred             CCccc-------CCCcCCCCCHHHHHHHHHHHHHhCcc---cHHHHHHhhhcCCCcchHHHHHHHhhc------------
Confidence            66665       23357789999999999999999965   599999988 59999999999998876            


Q ss_pred             CCCCCCCCcchhhhccCCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCC
Q 021816           89 PGYGNSSPFTLEWVNNHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSR  168 (307)
Q Consensus        89 P~y~~~s~f~l~~~~~~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tR  168 (307)
                      |.+.                                         ..+||+|||++||+++.+||. +|..||+ +|++|
T Consensus        74 P~I~-----------------------------------------kgpWT~EED~lLlel~~~~Gn-KWs~IAk-~LpGR  110 (249)
T PLN03212         74 PSVK-----------------------------------------RGGITSDEEDLILRLHRLLGN-RWSLIAG-RIPGR  110 (249)
T ss_pred             hhcc-----------------------------------------cCCCChHHHHHHHHHHHhccc-cHHHHHh-hcCCC
Confidence            4432                                         248999999999999999998 9999997 99999


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 021816          169 TPTQVASHAQKYFIRQL  185 (307)
Q Consensus       169 T~~Qv~sh~qky~~r~~  185 (307)
                      |+.||++||..++++..
T Consensus       111 TDnqIKNRWns~LrK~l  127 (249)
T PLN03212        111 TDNEIKNYWNTHLRKKL  127 (249)
T ss_pred             CHHHHHHHHHHHHhHHH
Confidence            99999999998877654

>PLN03091 hypothetical protein; Provisional

Probab=99.85  E-value=8e-21  Score=186.77  Aligned_cols=112  Identities=14%  Similarity=0.295  Sum_probs=97.8

Q ss_pred             CCCcccCCCccccCCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCC-CCCHHHHHHHHHHHHHhhhhhhhcCCC
Q 021816            9 SPASYISSSNWLLEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIP-GKTVVDVIKQYKELEADISNIEAGLIP   87 (307)
Q Consensus         9 ~p~~~~~~~~w~~~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vP-GRT~~qc~~rY~~L~~dV~~IEsG~v~   87 (307)
                      +||||.       +.-.++.||+|||++|+++|.+|+..   .|..||..++ |||.+||++||...++           
T Consensus         4 ~~Cc~K-------qklrKg~WTpEEDe~L~~~V~kyG~~---nWs~IAk~~g~gRT~KQCRERW~NyLd-----------   62 (459)
T PLN03091          4 HSCCYK-------QKLRKGLWSPEEDEKLLRHITKYGHG---CWSSVPKQAGLQRCGKSCRLRWINYLR-----------   62 (459)
T ss_pred             CccCcC-------CCCcCCCCCHHHHHHHHHHHHHhCcC---CHHHHhhhhccCcCcchHhHHHHhccC-----------
Confidence            478887       55677899999999999999999975   5999999885 8999999999998765           


Q ss_pred             CCCCCCCCCcchhhhccCCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCC
Q 021816           88 LPGYGNSSPFTLEWVNNHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTS  167 (307)
Q Consensus        88 ~P~y~~~s~f~l~~~~~~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~t  167 (307)
                       |.+                                         +.++||+|||++||+++++||. +|..||+ +|++
T Consensus        63 -P~I-----------------------------------------kKgpWT~EED~lLLeL~k~~Gn-KWskIAk-~LPG   98 (459)
T PLN03091         63 -PDL-----------------------------------------KRGTFSQQEENLIIELHAVLGN-RWSQIAA-QLPG   98 (459)
T ss_pred             -Ccc-----------------------------------------cCCCCCHHHHHHHHHHHHHhCc-chHHHHH-hcCC
Confidence             433                                         1248999999999999999998 9999997 9999


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q 021816          168 RTPTQVASHAQKYFIRQL  185 (307)
Q Consensus       168 RT~~Qv~sh~qky~~r~~  185 (307)
                      ||+.||++||...++|..
T Consensus        99 RTDnqIKNRWnslLKKkl  116 (459)
T PLN03091         99 RTDNEIKNLWNSCLKKKL  116 (459)
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            999999999998777654

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.77  E-value=1.4e-18  Score=160.36  Aligned_cols=103  Identities=17%  Similarity=0.244  Sum_probs=92.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCC-CCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchhhhcc
Q 021816           26 STRWTAAENKMFENALAVYDKDSPDRWQKVAAMIP-GKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNN  104 (307)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vP-GRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~~~~~  104 (307)
                      .+.||+|||.+|.+.|..|+.+   +|..||..++ +|+-++|+.||...+.            |++             
T Consensus         9 kGpWt~EED~~L~~~V~~~G~~---~W~~i~k~~gl~R~GKSCRlRW~NyLr------------P~i-------------   60 (238)
T KOG0048|consen    9 KGPWTQEEDLTQIRSIKSFGKH---NGTALPKLAGLRRCGKSCRLRWTNYLR------------PDL-------------   60 (238)
T ss_pred             CCCCChHHHHHHHHHHHHhCCC---CcchhhhhcCCCccchHHHHHhhcccC------------CCc-------------
Confidence            5899999999999999999987   5999999999 9999999999987654            332             


Q ss_pred             CCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHHH
Q 021816          105 HGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQ  184 (307)
Q Consensus       105 ~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~  184 (307)
                                                  |++.||+|||++|+++..+||. +|..||+ ++||||+..|++||.-.++|.
T Consensus        61 ----------------------------krg~fT~eEe~~Ii~lH~~~GN-rWs~IA~-~LPGRTDNeIKN~Wnt~lkkk  110 (238)
T KOG0048|consen   61 ----------------------------KRGNFSDEEEDLIIKLHALLGN-RWSLIAG-RLPGRTDNEVKNHWNTHLKKK  110 (238)
T ss_pred             ----------------------------cCCCCCHHHHHHHHHHHHHHCc-HHHHHHh-hCCCcCHHHHHHHHHHHHHHH
Confidence                                        3358999999999999999999 9999997 999999999999999887776


Q ss_pred             hc
Q 021816          185 LS  186 (307)
Q Consensus       185 ~s  186 (307)
                      ..
T Consensus       111 l~  112 (238)
T KOG0048|consen  111 LL  112 (238)
T ss_pred             HH
Confidence            54

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=7.4e-15  Score=140.79  Aligned_cols=198  Identities=44%  Similarity=0.618  Sum_probs=153.5

Q ss_pred             cccCCCccccCCCCC-----CCCCHHHHHHHHHHHHHhCCC----CChhHHHHHhhCCC-CCHHHHHHHHHHHHHhhhhh
Q 021816           12 SYISSSNWLLEESKS-----TRWTAAENKMFENALAVYDKD----SPDRWQKVAAMIPG-KTVVDVIKQYKELEADISNI   81 (307)
Q Consensus        12 ~~~~~~~w~~~~~~~-----~~WT~EEdk~Le~Ala~y~~~----tpdRW~kIAa~vPG-RT~~qc~~rY~~L~~dV~~I   81 (307)
                      +|..+..|.+++...     ..|++++++.|++|++.+...    ++++|++++..||+ ++..+++.+|..+..+|..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~   91 (335)
T KOG0724|consen   12 AYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIR   91 (335)
T ss_pred             HHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhh
Confidence            455566777776543     669999999999999999865    78999999999999 99999999999999999999


Q ss_pred             hhcCCCCCCCCCCC---C----cchhhhcc---CCCCCCCCcc-c-cCCCCCCC--------CCcccccccCCCCCCHHH
Q 021816           82 EAGLIPLPGYGNSS---P----FTLEWVNN---HGYDGFKHPY-A-VGGKRSSS--------VRPAEHERKKGVPWTEEE  141 (307)
Q Consensus        82 EsG~v~~P~y~~~s---~----f~l~~~~~---~~~dg~k~~~-~-~ggkr~~~--------~rs~~~erkKg~pWT~EE  141 (307)
                      +++.+++|.|...+   .    +...|...   ..|....... . .+.+....        ....+..++++.+|++.+
T Consensus        92 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (335)
T KOG0724|consen   92 ESGQKPFPKYGKSDTSLAEVEEFYNFWPKFKSWRQYPQKDEPDEEDSENRSQSRYSGGTQRGKSNAEELRRKGTPVTERE  171 (335)
T ss_pred             hccCCCccccCccccccccccccCCccccccccccCCCCCCcccccccchhhhhhcccccccccchhhhhhccchhHHHH
Confidence            99999999997521   0    22222211   1222211000 0 01111111        122455667889999999


Q ss_pred             HHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHH-----HHHHHHhcCCCCCCCCCCccccccccCCCCC
Q 021816          142 HKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQ-----KYFIRQLSGGKDKRRASIHDITTVNLNETRT  209 (307)
Q Consensus       142 d~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~q-----ky~~r~~s~~k~~~r~s~hdit~~~~~~~~~  209 (307)
                      +++++.++.++|++.|..|+++++..|++.|+.+|++     +|+.+.....+++++.++||++.+..-....
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~s~a~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  244 (335)
T KOG0724|consen  172 RKLVLLALKKDGKIDWRKISQNVEKERTPEQVASHAQEKAFEKALARQKSGEEEKRRKSIEDITTASEAEDRK  244 (335)
T ss_pred             HHHHHhhhcccccccceechhhhhhhhcchhhhhhhhhhhhHHHHHHHhhhccccccchhhhhhccchhhhhh
Confidence            9999999999999999999999999999999999999     9999999888999999999999987666533

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.53  E-value=2.2e-14  Score=146.10  Aligned_cols=151  Identities=13%  Similarity=0.212  Sum_probs=101.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCC-CCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchh
Q 021816           22 EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPG-KTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLE  100 (307)
Q Consensus        22 ~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPG-RT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~  100 (307)
                      .+.+...|+.||++.|....+.++--   .|++||+.++. |+..||..+|+.-+.-+...|...-.--.+..    ..+
T Consensus       249 P~~nk~~WS~EE~E~L~AiA~A~~~~---~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~a----lV~  321 (939)
T KOG0049|consen  249 PKWNKEHWSNEEVEKLKALAEAPKFV---SWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIA----LVK  321 (939)
T ss_pred             CccchhccChHHHHHHHHHHhccccc---cHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHH----HHH
Confidence            45567789999999998765555543   59999999987 99999999998766655554432111000000    000


Q ss_pred             hhccCCCCCCCCc-cccCCCCCCC-----CCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHH
Q 021816          101 WVNNHGYDGFKHP-YAVGGKRSSS-----VRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVA  174 (307)
Q Consensus       101 ~~~~~~~dg~k~~-~~~ggkr~~~-----~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~  174 (307)
                      .........++.+ +.+.|+....     +...++..++ ++||.+||.+|+.+|.+||..+|.+|.. .||+|+..||+
T Consensus       322 ~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikh-g~wt~~ED~~L~~AV~~Yg~kdw~k~R~-~vPnRSdsQcR  399 (939)
T KOG0049|consen  322 ITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKH-GRWTDQEDVLLVCAVSRYGAKDWAKVRQ-AVPNRSDSQCR  399 (939)
T ss_pred             HhhccCccchHHHHHhcCCcchhhhhhhheeccCccccC-CCCCCHHHHHHHHHHHHhCccchhhHHH-hcCCccHHHHH
Confidence            0011122333333 3344443322     2344555555 5999999999999999999889999997 99999999999


Q ss_pred             HHHHHHH
Q 021816          175 SHAQKYF  181 (307)
Q Consensus       175 sh~qky~  181 (307)
                      .+|.+.+
T Consensus       400 ~RY~nvL  406 (939)
T KOG0049|consen  400 ERYTNVL  406 (939)
T ss_pred             HHHHHHH
Confidence            9865543

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.53  E-value=1.1e-14  Score=107.50  Aligned_cols=51  Identities=43%  Similarity=0.665  Sum_probs=46.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCch---hcchhcccCCC-CHHHHHHHHHHHHHH
Q 021816          133 KGVPWTEEEHKLFLLGLKKHGKGDW---RNISRNFVTSR-TPTQVASHAQKYFIR  183 (307)
Q Consensus       133 Kg~pWT~EEd~llL~~l~kyG~G~W---~~Ia~~~v~tR-T~~Qv~sh~qky~~r  183 (307)
                      ++..||+|||.+||+||+.||.|+|   +.|+..++.+| |..||+||+||||.+
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            4568999999999999999999999   99998666678 999999999999976

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.44  E-value=3.7e-13  Score=137.37  Aligned_cols=100  Identities=24%  Similarity=0.469  Sum_probs=87.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchhh
Q 021816           22 EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEW  101 (307)
Q Consensus        22 ~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~~  101 (307)
                      .....+.||.+||.+|..||+.|++..   |.+|-+.||||+..||+.||...+.-              .         
T Consensus       356 Psikhg~wt~~ED~~L~~AV~~Yg~kd---w~k~R~~vPnRSdsQcR~RY~nvL~~--------------s---------  409 (939)
T KOG0049|consen  356 PSVKHGRWTDQEDVLLVCAVSRYGAKD---WAKVRQAVPNRSDSQCRERYTNVLNR--------------S---------  409 (939)
T ss_pred             ccccCCCCCCHHHHHHHHHHHHhCccc---hhhHHHhcCCccHHHHHHHHHHHHHH--------------h---------
Confidence            456788999999999999999999874   99999999999999999999987761              0         


Q ss_pred             hccCCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHH
Q 021816          102 VNNHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQ  178 (307)
Q Consensus       102 ~~~~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~q  178 (307)
                                                    .|.+.||-.||+.||.+|++||.|+|-+||. ++|.||..|..++-.
T Consensus       410 ------------------------------~K~~rW~l~edeqL~~~V~~YG~g~WakcA~-~Lp~~t~~q~~rrR~  455 (939)
T KOG0049|consen  410 ------------------------------AKVERWTLVEDEQLLYAVKVYGKGNWAKCAM-LLPKKTSRQLRRRRL  455 (939)
T ss_pred             ------------------------------hccCceeecchHHHHHHHHHHccchHHHHHH-HccccchhHHHHHHH
Confidence                                          1335899999999999999999999999997 999999977665433

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.42  E-value=1.7e-13  Score=96.75  Aligned_cols=45  Identities=40%  Similarity=0.677  Sum_probs=41.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhcccC-CCCHHHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVT-SRTPTQVASHAQKY  180 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~-tRT~~Qv~sh~qky  180 (307)
                      .+||+|||++|+++|++||.++|..||. +|+ +||+.||++||++|
T Consensus         2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~-~~~~~Rt~~qc~~~~~~~   47 (48)
T PF00249_consen    2 GPWTEEEDEKLLEAVKKYGKDNWKKIAK-RMPGGRTAKQCRSRYQNL   47 (48)
T ss_dssp             -SS-HHHHHHHHHHHHHSTTTHHHHHHH-HHSSSSTHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCcHHHHHHH-HcCCCCCHHHHHHHHHhh
Confidence            3799999999999999999966999997 888 99999999999987

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.23  E-value=1.6e-11  Score=86.54  Aligned_cols=46  Identities=33%  Similarity=0.672  Sum_probs=41.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCC-CCCHHHHHHHHHHHH
Q 021816           27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAMIP-GKTVVDVIKQYKELE   75 (307)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vP-GRT~~qc~~rY~~L~   75 (307)
                      ..||+||+++|.+||.+||.+   +|..||..|| |||..||+.||..++
T Consensus         2 ~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    2 GPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             -SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            579999999999999999976   6999999999 999999999998763

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.20  E-value=5.3e-11  Score=87.02  Aligned_cols=42  Identities=19%  Similarity=0.525  Sum_probs=36.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 021816           29 WTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKEL   74 (307)
Q Consensus        29 WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L   74 (307)
                      ||+|||.+|..++..|+.    +|..||.+|+.||..+|+.||...
T Consensus         1 WT~eEd~~L~~~~~~~g~----~W~~Ia~~l~~Rt~~~~~~r~~~~   42 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN----DWKKIAEHLGNRTPKQCRNRWRNH   42 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-----HHHHHHHSTTS-HHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHCc----CHHHHHHHHCcCCHHHHHHHHHHH
Confidence            999999999999999985    499999999669999999999983

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.13  E-value=6.1e-11  Score=80.91  Aligned_cols=46  Identities=33%  Similarity=0.559  Sum_probs=42.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF  181 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~  181 (307)
                      .+||+||+.+|+.++.+||.++|..||. .+++||+.+|+.+|..++
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~-~~~~rt~~~~~~~~~~~~   47 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGKNNWEKIAK-ELPGRTAEQCRERWNNLL   47 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HcCCCCHHHHHHHHHHHc
Confidence            4799999999999999999559999997 999999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.10  E-value=1.1e-10  Score=78.56  Aligned_cols=44  Identities=41%  Similarity=0.764  Sum_probs=41.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHH
Q 021816          136 PWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKY  180 (307)
Q Consensus       136 pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky  180 (307)
                      +||+||+++|+.++.+||.++|..||+ ++++||..||+.||+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~-~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAK-ELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHh-HcCCCCHHHHHHHHHHh
Confidence            599999999999999999559999997 99999999999999865

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.99  E-value=1.1e-09  Score=74.67  Aligned_cols=46  Identities=26%  Similarity=0.645  Sum_probs=42.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHH
Q 021816           27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELE   75 (307)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~   75 (307)
                      ..||+||+++|..+++.|+..   +|..||..||+||..||+.+|..+.
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~~---~w~~Ia~~~~~rt~~~~~~~~~~~~   47 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGKN---NWEKIAKELPGRTAEQCRERWNNLL   47 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCcC---CHHHHHHHcCCCCHHHHHHHHHHHc
Confidence            579999999999999999942   4999999999999999999998765

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=98.93  E-value=7.7e-10  Score=80.83  Aligned_cols=42  Identities=38%  Similarity=0.693  Sum_probs=36.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHH
Q 021816          137 WTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKY  180 (307)
Q Consensus       137 WT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky  180 (307)
                      ||+|||++|+.++++||. +|..||. +++.||+.||+.||.++
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~-~l~~Rt~~~~~~r~~~~   42 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAE-HLGNRTPKQCRNRWRNH   42 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHH-HSTTS-HHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHH-HHCcCCHHHHHHHHHHH
Confidence            999999999999999997 9999997 88889999999998863

...

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.88  E-value=4.7e-09  Score=70.52  Aligned_cols=44  Identities=30%  Similarity=0.721  Sum_probs=40.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 021816           28 RWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKEL   74 (307)
Q Consensus        28 ~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L   74 (307)
                      .||+||++.|..+++.|+..   +|..||..||+||..||+.+|..+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~---~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKN---NWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcC---CHHHHHhHcCCCCHHHHHHHHHHh
Confidence            59999999999999999943   499999999999999999999865

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=98.84  E-value=4.4e-09  Score=114.53  Aligned_cols=133  Identities=25%  Similarity=0.420  Sum_probs=97.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHh----------hhhhhhcCCCCCCCCC---
Q 021816           27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEAD----------ISNIEAGLIPLPGYGN---   93 (307)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~d----------V~~IEsG~v~~P~y~~---   93 (307)
                      ..||+.|-..|.+|+++||.+   ....||..|.|||+.+|+++++.++..          ++.||.|...+-....   
T Consensus       825 ~~w~~~~f~~f~~~~~~~gr~---~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~  901 (1033)
T PLN03142        825 STWSRRDFNAFIRACEKYGRN---DIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMK  901 (1033)
T ss_pred             CcccHHHHHHHHHHHHHhCHh---HHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            569999999999999999976   499999999999999999887777654          4567777543321110   


Q ss_pred             -----CCCcchhhhccC-CCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhcch------
Q 021816           94 -----SSPFTLEWVNNH-GYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNIS------  161 (307)
Q Consensus        94 -----~s~f~l~~~~~~-~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia------  161 (307)
                           .+.+..+|.... .|..                      .++..+|+|||+.||..+.+||.|+|..|.      
T Consensus       902 ~~~~k~~~~~~p~~~l~~~~~~----------------------~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~  959 (1033)
T PLN03142        902 AIGKKLDRYKNPWLELKIQYGQ----------------------NKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTS  959 (1033)
T ss_pred             HHHHHHHHccCcHHHceeecCC----------------------CCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhC
Confidence                 011112222111 1110                      234579999999999999999999999995      


Q ss_pred             -----hcccCCCCHHHHHHHHHHHHHHH
Q 021816          162 -----RNFVTSRTPTQVASHAQKYFIRQ  184 (307)
Q Consensus       162 -----~~~v~tRT~~Qv~sh~qky~~r~  184 (307)
                           .+|+.+||+.++..|+.-++.-.
T Consensus       960 ~~f~fd~~~~srt~~~~~~r~~~l~~~~  987 (1033)
T PLN03142        960 PLFRFDWFVKSRTPQELARRCDTLIRLI  987 (1033)
T ss_pred             CceeeehhhccCCHHHHHHHHHHHHHHH
Confidence                 57889999999999998554443

>PLN03212 Transcription repressor MYB5; Provisional

Probab=98.83  E-value=4.2e-09  Score=98.01  Aligned_cols=49  Identities=29%  Similarity=0.523  Sum_probs=44.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCchhcchhccc-CCCCHHHHHHHHHHHHH
Q 021816          133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFV-TSRTPTQVASHAQKYFI  182 (307)
Q Consensus       133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v-~tRT~~Qv~sh~qky~~  182 (307)
                      +..+||+|||++|+.+|++||..+|..||+ .+ ++||+.||+.||.+|+.
T Consensus        24 KRg~WT~EEDe~L~~lV~kyG~~nW~~IAk-~~g~gRT~KQCReRW~N~L~   73 (249)
T PLN03212         24 KRGPWTVEEDEILVSFIKKEGEGRWRSLPK-RAGLLRCGKSCRLRWMNYLR   73 (249)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCcccHHHHHH-hhhcCCCcchHHHHHHHhhc
Confidence            445899999999999999999889999997 66 69999999999998874

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=98.73  E-value=1.4e-08  Score=102.16  Aligned_cols=101  Identities=24%  Similarity=0.466  Sum_probs=87.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchhhhcc
Q 021816           25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNN  104 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~~~~~  104 (307)
                      .++.|+.-||..|..||.+||++   .|.+||..++-+|+.||..+|.+.++            |.+             
T Consensus         6 kggvwrntEdeilkaav~kyg~n---qws~i~sll~~kt~rqC~~rw~e~ld------------p~i-------------   57 (617)
T KOG0050|consen    6 KGGVWRNTEDEVLKAAVMKYGKN---QWSRIASLLNRKTARQCKARWEEWLD------------PAI-------------   57 (617)
T ss_pred             ecceecccHHHHHHHHHHHcchH---HHHHHHHHHhhcchhHHHHHHHHHhC------------HHH-------------
Confidence            46789999999999999999987   49999999999999999999997765            332             


Q ss_pred             CCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHHH
Q 021816          105 HGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQ  184 (307)
Q Consensus       105 ~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~  184 (307)
                                                  +.+.|+.|||+.||.+.+.+.. .|+.|+.  +-+||..||-.||.+..--.
T Consensus        58 ----------------------------~~tews~eederlLhlakl~p~-qwrtIa~--i~gr~~~qc~eRy~~ll~~~  106 (617)
T KOG0050|consen   58 ----------------------------KKTEWSREEDERLLHLAKLEPT-QWRTIAD--IMGRTSQQCLERYNNLLDVY  106 (617)
T ss_pred             ----------------------------hhhhhhhhHHHHHHHHHHhcCC-ccchHHH--HhhhhHHHHHHHHHHHHHHH
Confidence                                        2347999999999999999998 9999996  77999999999988654433

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.72  E-value=4.3e-08  Score=100.79  Aligned_cols=103  Identities=19%  Similarity=0.433  Sum_probs=85.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchhhhcc
Q 021816           25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNN  104 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~~~~~  104 (307)
                      .++.||+||++.|...++.++.+    |..|+..| ||.+.+|+.+|.....            ++-             
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~~----W~~Ig~~l-gr~P~~crd~wr~~~~------------~g~-------------  432 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGND----WKEIGKAL-GRMPMDCRDRWRQYVK------------CGS-------------  432 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhccc----HHHHHHHH-ccCcHHHHHHHHHhhc------------ccc-------------
Confidence            68899999999999999999965    99999999 8999999999987543            110             


Q ss_pred             CCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHH-------Hh-------C-----C-----C-chhc
Q 021816          105 HGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLK-------KH-------G-----K-----G-DWRN  159 (307)
Q Consensus       105 ~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~-------ky-------G-----~-----G-~W~~  159 (307)
                                    +            .+..+||.||++.||..|+       .|       |     .     + .|..
T Consensus       433 --------------~------------~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~  486 (607)
T KOG0051|consen  433 --------------K------------RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTL  486 (607)
T ss_pred             --------------c------------cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhh
Confidence                          0            1345899999999999996       23       1     1     1 6999


Q ss_pred             chhcccCCCCHHHHHHHHHHHHHHH
Q 021816          160 ISRNFVTSRTPTQVASHAQKYFIRQ  184 (307)
Q Consensus       160 Ia~~~v~tRT~~Qv~sh~qky~~r~  184 (307)
                      |+. .+.||+..||+.+|.+...+-
T Consensus       487 vse-~~~TR~~~qCr~Kw~kl~~~~  510 (607)
T KOG0051|consen  487 VSE-MLGTRSRIQCRYKWYKLTTSP  510 (607)
T ss_pred             hhH-hhcCCCcchHHHHHHHHHhhH
Confidence            997 999999999999999876654

>PLN03091 hypothetical protein; Provisional

Probab=98.59  E-value=3.7e-08  Score=97.98  Aligned_cols=48  Identities=21%  Similarity=0.370  Sum_probs=43.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCchhcchhccc-CCCCHHHHHHHHHHHHH
Q 021816          134 GVPWTEEEHKLFLLGLKKHGKGDWRNISRNFV-TSRTPTQVASHAQKYFI  182 (307)
Q Consensus       134 g~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v-~tRT~~Qv~sh~qky~~  182 (307)
                      .++||+|||++|+.+|++||.++|..||+ .+ ++||+.||+.||.+|+.
T Consensus        14 Kg~WTpEEDe~L~~~V~kyG~~nWs~IAk-~~g~gRT~KQCRERW~NyLd   62 (459)
T PLN03091         14 KGLWSPEEDEKLLRHITKYGHGCWSSVPK-QAGLQRCGKSCRLRWINYLR   62 (459)
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHhh-hhccCcCcchHhHHHHhccC
Confidence            35899999999999999999999999997 55 59999999999997653

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=98.50  E-value=7.6e-08  Score=89.06  Aligned_cols=47  Identities=21%  Similarity=0.352  Sum_probs=44.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhcccC-CCCHHHHHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVT-SRTPTQVASHAQKYFI  182 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~-tRT~~Qv~sh~qky~~  182 (307)
                      +|||+|||+.|+..|++||.|+|..|++ .++ +|+..+||-||..|++
T Consensus        10 GpWt~EED~~L~~~V~~~G~~~W~~i~k-~~gl~R~GKSCRlRW~NyLr   57 (238)
T KOG0048|consen   10 GPWTQEEDLTQIRSIKSFGKHNGTALPK-LAGLRRCGKSCRLRWTNYLR   57 (238)
T ss_pred             CCCChHHHHHHHHHHHHhCCCCcchhhh-hcCCCccchHHHHHhhcccC
Confidence            5999999999999999999999999997 888 9999999999999854

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.49  E-value=2.4e-07  Score=94.30  Aligned_cols=106  Identities=21%  Similarity=0.357  Sum_probs=90.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchhhh
Q 021816           23 ESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWV  102 (307)
Q Consensus        23 ~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~~~  102 (307)
                      ....+.|+..||..+..++..|+.+   .|.+||+.+.-+|..||..||...++            |.+           
T Consensus        17 ~~k~gsw~~~EDe~l~~~vk~l~~n---nws~vas~~~~~~~kq~~~rw~~~ln------------p~l-----------   70 (512)
T COG5147          17 KRKGGSWKRTEDEDLKALVKKLGPN---NWSKVASLLISSTGKQSSNRWNNHLN------------PQL-----------   70 (512)
T ss_pred             eecCCCCCCcchhHHHHHHhhcccc---cHHHHHHHhcccccccccchhhhhhc------------hhc-----------
Confidence            4567799999999999999999866   49999999988999999999965433            222           


Q ss_pred             ccCCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHH
Q 021816          103 NNHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFI  182 (307)
Q Consensus       103 ~~~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~  182 (307)
                                                    +...|+.|||+.|+.+-..+|. .|..|+. ++++||..||..+|.+.+.
T Consensus        71 ------------------------------k~~~~~~eed~~li~l~~~~~~-~wstia~-~~d~rt~~~~~ery~~~~~  118 (512)
T COG5147          71 ------------------------------KKKNWSEEEDEQLIDLDKELGT-QWSTIAD-YKDRRTAQQCVERYVNTLE  118 (512)
T ss_pred             ------------------------------ccccccHHHHHHHHHHHHhcCc-hhhhhcc-ccCccchHHHHHHHHHHhh
Confidence                                          2347999999999999999999 8999996 9999999999999988777


Q ss_pred             HHhc
Q 021816          183 RQLS  186 (307)
Q Consensus       183 r~~s  186 (307)
                      ...+
T Consensus       119 ~~~s  122 (512)
T COG5147         119 DLSS  122 (512)
T ss_pred             hhhc
Confidence            7654

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=98.42  E-value=2e-07  Score=92.41  Aligned_cols=49  Identities=27%  Similarity=0.565  Sum_probs=46.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHHHh
Q 021816          136 PWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQL  185 (307)
Q Consensus       136 pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~  185 (307)
                      .||.+|+-+||+|+..||-|+|..||. +|++||..+|+.||.|+|...-
T Consensus        74 ~WtadEEilLLea~~t~G~GNW~dIA~-hIGtKtkeeck~hy~k~fv~s~  122 (438)
T KOG0457|consen   74 SWTADEEILLLEAAETYGFGNWQDIAD-HIGTKTKEECKEHYLKHFVNSP  122 (438)
T ss_pred             CCChHHHHHHHHHHHHhCCCcHHHHHH-HHcccchHHHHHHHHHHHhcCc
Confidence            599999999999999999999999996 9999999999999999998763

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.67  E-value=7.8e-05  Score=74.34  Aligned_cols=47  Identities=28%  Similarity=0.427  Sum_probs=43.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHH
Q 021816           26 STRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELE   75 (307)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~   75 (307)
                      ...||.+|+-+|.+|+..||-++   |..||.+|+.||..||++||.+..
T Consensus        72 ~~~WtadEEilLLea~~t~G~GN---W~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   72 DPSWTADEEILLLEAAETYGFGN---WQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCChHHHHHHHHHHHHhCCCc---HHHHHHHHcccchHHHHHHHHHHH
Confidence            46799999999999999999985   999999999999999999997643

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.67  E-value=3.3e-05  Score=74.59  Aligned_cols=47  Identities=28%  Similarity=0.604  Sum_probs=45.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHH
Q 021816          136 PWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIR  183 (307)
Q Consensus       136 pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r  183 (307)
                      .|+.+|+-+|++++...|-|+|..||. +|+.|+..+|++||-||+..
T Consensus        65 ~WgadEEllli~~~~TlGlGNW~dIad-yiGsr~kee~k~HylK~y~e  111 (432)
T COG5114          65 GWGADEELLLIECLDTLGLGNWEDIAD-YIGSRAKEEIKSHYLKMYDE  111 (432)
T ss_pred             CcCchHHHHHHHHHHhcCCCcHHHHHH-HHhhhhhHHHHHHHHHHHhh
Confidence            599999999999999999999999997 99999999999999999875

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.65  E-value=0.00018  Score=53.23  Aligned_cols=47  Identities=15%  Similarity=0.326  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCChhH---HHHHhhCC-CC-CHHHHHHHHHHHH
Q 021816           26 STRWTAAENKMFENALAVYDKDSPDRW---QKVAAMIP-GK-TVVDVIKQYKELE   75 (307)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~tpdRW---~kIAa~vP-GR-T~~qc~~rY~~L~   75 (307)
                      +-.||+||..+|..||..+|.+.   |   ..|++.+. .+ |..||+.|+++.-
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~---~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPD---WATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCc---ccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999753   9   99988775 35 9999999998753

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.61  E-value=4.6e-05  Score=76.58  Aligned_cols=42  Identities=31%  Similarity=0.592  Sum_probs=39.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQ  178 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~q  178 (307)
                      ..||.+|.-+||+||+.||. +|.+||+ +|.+||+.||.-|+-
T Consensus       280 k~WS~qE~~LLLEGIe~ygD-dW~kVA~-HVgtKt~EqCIl~FL  321 (531)
T COG5259         280 KNWSRQELLLLLEGIEMYGD-DWDKVAR-HVGTKTKEQCILHFL  321 (531)
T ss_pred             ccccHHHHHHHHHHHHHhhh-hHHHHHH-HhCCCCHHHHHHHHH
Confidence            38999999999999999998 9999998 999999999999864

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.34  E-value=0.0002  Score=73.36  Aligned_cols=43  Identities=26%  Similarity=0.487  Sum_probs=39.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHH
Q 021816          134 GVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQ  178 (307)
Q Consensus       134 g~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~q  178 (307)
                      +..||++|.-+||++|++||. +|.+||. +|.+||..||-.|+-
T Consensus       253 ~~~WT~qE~lLLLE~ie~y~d-dW~kVa~-hVg~ks~eqCI~kFL  295 (506)
T KOG1279|consen  253 RPNWTEQETLLLLEAIEMYGD-DWNKVAD-HVGTKSQEQCILKFL  295 (506)
T ss_pred             CCCccHHHHHHHHHHHHHhcc-cHHHHHh-ccCCCCHHHHHHHHH
Confidence            447999999999999999998 9999997 999999999999754

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=97.32  E-value=0.00034  Score=73.60  Aligned_cols=50  Identities=34%  Similarity=0.561  Sum_probs=44.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 021816           25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADI   78 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV   78 (307)
                      .+..||..|.++|.+||..|-+|    +.+|+.+|++|||.||.+.|.....++
T Consensus       618 gSd~WTp~E~~lF~kA~y~~~KD----F~~v~km~~~KtVaqCVeyYYtWKK~~  667 (907)
T KOG4167|consen  618 GSDKWTPLERKLFNKALYTYSKD----FIFVQKMVKSKTVAQCVEYYYTWKKIM  667 (907)
T ss_pred             CcccccHHHHHHHHHHHHHhccc----HHHHHHHhccccHHHHHHHHHHHHHhc
Confidence            45689999999999999999987    999999999999999999987665553

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.32  E-value=0.00022  Score=71.77  Aligned_cols=46  Identities=26%  Similarity=0.546  Sum_probs=42.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 021816           25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKEL   74 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L   74 (307)
                      ....||++|.-+|.++|..|+.+    |.+||.+|+.||++||+-||-.|
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygDd----W~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGDD----WDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhhh----HHHHHHHhCCCCHHHHHHHHHcC
Confidence            44589999999999999999965    99999999999999999999765

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=97.18  E-value=0.0051  Score=62.06  Aligned_cols=49  Identities=8%  Similarity=-0.048  Sum_probs=43.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHHHh
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQL  185 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~  185 (307)
                      ..||.+|.-+++.+|++||+ ...-|+ +.|+.++-.|+.+....|-+|+.
T Consensus       370 ~~~~T~~~la~v~~I~~~~~-~~~pl~-wrik~t~cmee~e~l~~~~Rr~m  418 (534)
T KOG1194|consen  370 RCFDTPAALALIDNIKRKHH-MCVPLV-WRVKQTKCMEENEILNEEARRQM  418 (534)
T ss_pred             cccCcHHHHHHHHHHHHhcc-Ccchhh-hHhcCcchhhHHHHHHHHHHHHH
Confidence            57999999999999999999 788888 58999999999999888888774

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=97.17  E-value=0.00047  Score=58.07  Aligned_cols=50  Identities=32%  Similarity=0.541  Sum_probs=40.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC---Cchhcch-----------hcccCCCCHHHHHHHHHHHHH
Q 021816          133 KGVPWTEEEHKLFLLGLKKHGK---GDWRNIS-----------RNFVTSRTPTQVASHAQKYFI  182 (307)
Q Consensus       133 Kg~pWT~EEd~llL~~l~kyG~---G~W~~Ia-----------~~~v~tRT~~Qv~sh~qky~~  182 (307)
                      ++..||+|||+.||..+.+||.   |.|..|.           .+|+.+||+..+.-|+.-++.
T Consensus        48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~  111 (118)
T PF09111_consen   48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIK  111 (118)
T ss_dssp             S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHH
T ss_pred             CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHH
Confidence            3457999999999999999999   8999997           578899999999999985443

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.16  E-value=0.00061  Score=69.82  Aligned_cols=49  Identities=31%  Similarity=0.557  Sum_probs=44.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 021816           22 EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKEL   74 (307)
Q Consensus        22 ~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L   74 (307)
                      ....+..||++|.-+|..+|..|+.+    |.+||.+|.+||..||+-|+..|
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie~y~dd----W~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIEMYGDD----WNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHHHhccc----HHHHHhccCCCCHHHHHHHHHhc
Confidence            34567899999999999999999976    99999999999999999999764

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.06  E-value=0.0051  Score=56.21  Aligned_cols=113  Identities=17%  Similarity=0.211  Sum_probs=74.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCC---CCCHHHHHHHHHHHHHh--hhhhhhcCCCCCCCCCCCCcchhhh
Q 021816           28 RWTAAENKMFENALAVYDKDSPDRWQKVAAMIP---GKTVVDVIKQYKELEAD--ISNIEAGLIPLPGYGNSSPFTLEWV  102 (307)
Q Consensus        28 ~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vP---GRT~~qc~~rY~~L~~d--V~~IEsG~v~~P~y~~~s~f~l~~~  102 (307)
                      .|++++|-+|++||..-..     -+.|+.-|+   .-|..++.+||..|+-|  |.++....                 
T Consensus         1 rW~~~DDl~Li~av~~~~~-----L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~-----------------   58 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTND-----LESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAA-----------------   58 (199)
T ss_pred             CCCchhhHHHHHHHHHhcC-----HHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHH-----------------
Confidence            5999999999999986432     667777665   46999999999999876  22221110                 


Q ss_pred             ccCCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCC--chhcch----hcccCCCCHHHHHHH
Q 021816          103 NNHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKG--DWRNIS----RNFVTSRTPTQVASH  176 (307)
Q Consensus       103 ~~~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G--~W~~Ia----~~~v~tRT~~Qv~sh  176 (307)
                       +.+..+..       ..         ......+||.+|+++|..........  .+.+|=    ..|-++||+.+...|
T Consensus        59 -m~~l~p~~-------~~---------~iq~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~H  121 (199)
T PF13325_consen   59 -MRNLHPEL-------IA---------AIQSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDH  121 (199)
T ss_pred             -HHhCCcch-------hh---------cccccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHH
Confidence             00000000       00         00123589999999998876554332  455552    237799999999999


Q ss_pred             HHH
Q 021816          177 AQK  179 (307)
Q Consensus       177 ~qk  179 (307)
                      |+.
T Consensus       122 W~l  124 (199)
T PF13325_consen  122 WRL  124 (199)
T ss_pred             HHH
Confidence            993

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=96.56  E-value=0.0015  Score=66.74  Aligned_cols=50  Identities=22%  Similarity=0.470  Sum_probs=46.0

Q ss_pred             cCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHH
Q 021816          132 KKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFI  182 (307)
Q Consensus       132 kKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~  182 (307)
                      +||+-|+..||+.|-.++.+||...|++|+. .+.-+|+.||+.+|.++..
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~s-ll~~kt~rqC~~rw~e~ld   54 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIAS-LLNRKTARQCKARWEEWLD   54 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHH-HHhhcchhHHHHHHHHHhC
Confidence            4677899999999999999999999999997 9999999999999998754

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=96.50  E-value=0.0085  Score=62.52  Aligned_cols=108  Identities=12%  Similarity=0.338  Sum_probs=72.9

Q ss_pred             CCCCCCHHHHHHHHHHHH-------Hh------------CCC---CChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhh
Q 021816           25 KSTRWTAAENKMFENALA-------VY------------DKD---SPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIE   82 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala-------~y------------~~~---tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IE   82 (307)
                      .++.||.||...|..+|.       ++            |..   .+..|..|++++.+|+..||+.+|.+++..     
T Consensus       435 ~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~-----  509 (607)
T KOG0051|consen  435 NRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTS-----  509 (607)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhh-----
Confidence            678999999999999995       23            111   345899999999999999999999988762     


Q ss_pred             hcCCCCCCCCCCCCcchhhhccCCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchh
Q 021816           83 AGLIPLPGYGNSSPFTLEWVNNHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISR  162 (307)
Q Consensus        83 sG~v~~P~y~~~s~f~l~~~~~~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~  162 (307)
                            |..+.     ..+.     .+                       ...-|..|+=..|  .+..++.=+|..|+.
T Consensus       510 ------~s~n~-----~~~~-----~~-----------------------~~~v~l~ErL~dl--~~~e~~~IDW~~l~~  548 (607)
T KOG0051|consen  510 ------PSFNK-----RQES-----KG-----------------------SDMVWLLERLSDL--DLTEESPIDWKSLAE  548 (607)
T ss_pred             ------HHhhc-----cccc-----cc-----------------------chhHHHHHHHHhc--ccccCCccCHHHHHH
Confidence                  11110     0000     00                       1124665543333  233455558999997


Q ss_pred             cccCCCC-HHHHHHHHHH
Q 021816          163 NFVTSRT-PTQVASHAQK  179 (307)
Q Consensus       163 ~~v~tRT-~~Qv~sh~qk  179 (307)
                       +.++.. +.+|+.+|-.
T Consensus       549 -~~~g~~~~~e~r~q~~~  565 (607)
T KOG0051|consen  549 -YAPGESTGEELRLQFER  565 (607)
T ss_pred             -hCCCCCcHHHHHHHHHh
Confidence             999998 8889987653

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]

Probab=96.39  E-value=0.0035  Score=66.96  Aligned_cols=138  Identities=22%  Similarity=0.300  Sum_probs=86.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhh----------hhhhcCCCCCCCCCCC
Q 021816           26 STRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADIS----------NIEAGLIPLPGYGNSS   95 (307)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~----------~IEsG~v~~P~y~~~s   95 (307)
                      -..||+.|-..|..|..+|+.++   -+.||+.+.+ |+.||...-+-+++.+.          .||.|...+..-.. -
T Consensus       795 ft~w~k~df~~fi~a~eKygr~d---i~~ia~~~e~-~~eev~~y~rvfwer~~el~d~ek~~~~ie~~e~~i~r~~~-~  869 (971)
T KOG0385|consen  795 FTNWTKRDFNQFIKANEKYGRDD---IENIAAEVEG-TPEEVGEYARVFWERLEELSDIEKIIYQIERGEKRIQRGDS-I  869 (971)
T ss_pred             ccchhhhhHHHHHHHhhccCcch---hhhhHHhhcC-CHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhHhhhhHHHH-H
Confidence            45699999999999999999774   8899999988 99999887555544432          35555433221100 0


Q ss_pred             CcchhhhccCCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCc---hhcch-----------
Q 021816           96 PFTLEWVNNHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGD---WRNIS-----------  161 (307)
Q Consensus        96 ~f~l~~~~~~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~---W~~Ia-----------  161 (307)
                      ...++- ....+..           +..-+ ......++...|++||+.|+.+|.|+|.+.   |..+.           
T Consensus       870 ~~~ld~-k~~~~k~-----------p~~l~-i~~~~nk~~~ys~~edrfL~~~l~K~g~~~~~~~e~lr~~~~~~~~frf  936 (971)
T KOG0385|consen  870 KKALDD-KIARYKA-----------PHQLR-IQYGTNKGKNYSEEEDRFLECMLHKLGFDAENVYEELRQPIRNSPQFRF  936 (971)
T ss_pred             HHHHhh-hHhhhcC-----------chhee-eeeccccCCCCchhhHHHHHHHHHHhccCchhHHHHHHHHHhcCccccc
Confidence            000000 0000000           00000 000112566899999999999999999854   54443           


Q ss_pred             hcccCCCCHHHHHHHHHHHH
Q 021816          162 RNFVTSRTPTQVASHAQKYF  181 (307)
Q Consensus       162 ~~~v~tRT~~Qv~sh~qky~  181 (307)
                      .||+.+||...++.|+..|+
T Consensus       937 dw~~~sRt~~el~Rr~ntli  956 (971)
T KOG0385|consen  937 DWFIKSRTAMELQRRCNTLI  956 (971)
T ss_pred             ceeeehhhHHHHHhcCCeeE
Confidence            57889999988877766543

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.38  E-value=0.0052  Score=47.55  Aligned_cols=54  Identities=17%  Similarity=0.385  Sum_probs=38.6

Q ss_pred             CCCCHHHHHHHHHHHHH--hC------CCC-C-hhHHHHHhhCC----CCCHHHHHHHHHHHHHhhhh
Q 021816           27 TRWTAAENKMFENALAV--YD------KDS-P-DRWQKVAAMIP----GKTVVDVIKQYKELEADISN   80 (307)
Q Consensus        27 ~~WT~EEdk~Le~Ala~--y~------~~t-p-dRW~kIAa~vP----GRT~~qc~~rY~~L~~dV~~   80 (307)
                      ..||.+|...|..+...  +.      ... . .-|..||..|.    .||+.||+.+|+.|..+-+.
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~   69 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKK   69 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            57999999999998887  21      111 2 36999999985    59999999999999987554

>KOG4329 consensus DNA-binding protein [General function prediction only]

Probab=96.26  E-value=0.021  Score=56.46  Aligned_cols=48  Identities=33%  Similarity=0.528  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHHHhc
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLS  186 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~s  186 (307)
                      ..|+++|=+.|.+||+.||+ ++..|.++-|++|+..+|-.+   ||...++
T Consensus       278 ~~wsEeEcr~FEegl~~yGK-DF~lIr~nkvrtRsvgElVey---YYlWKkS  325 (445)
T KOG4329|consen  278 SGWSEEECRNFEEGLELYGK-DFHLIRANKVRTRSVGELVEY---YYLWKKS  325 (445)
T ss_pred             ccCCHHHHHHHHHHHHHhcc-cHHHHHhcccccchHHHHHHH---HHHhhcC
Confidence            36999999999999999999 999999999999999999886   5556554

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.96  E-value=0.011  Score=57.55  Aligned_cols=48  Identities=17%  Similarity=0.407  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816           26 STRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~   76 (307)
                      ...|+..|+-+|++++...|.++   |+-||.+|+.|+.++|+.||-+...
T Consensus        63 ~e~WgadEEllli~~~~TlGlGN---W~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGN---WEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCc---HHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            34699999999999999999985   9999999999999999999987643

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=95.73  E-value=0.014  Score=60.12  Aligned_cols=52  Identities=15%  Similarity=0.369  Sum_probs=45.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 021816           23 ESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADI   78 (307)
Q Consensus        23 ~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV   78 (307)
                      --....|+.|||+.+..+-..++.    +|..||..+|+||..+|.++|..++.+.
T Consensus        69 ~lk~~~~~~eed~~li~l~~~~~~----~wstia~~~d~rt~~~~~ery~~~~~~~  120 (512)
T COG5147          69 QLKKKNWSEEEDEQLIDLDKELGT----QWSTIADYKDRRTAQQCVERYVNTLEDL  120 (512)
T ss_pred             hcccccccHHHHHHHHHHHHhcCc----hhhhhccccCccchHHHHHHHHHHhhhh
Confidence            346788999999999998888875    4999999999999999999999888754

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=95.62  E-value=0.018  Score=57.12  Aligned_cols=67  Identities=21%  Similarity=0.438  Sum_probs=52.4

Q ss_pred             cccccC--CCcccCCCccccCCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 021816            4 ETEVIS--PASYISSSNWLLEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKEL   74 (307)
Q Consensus         4 ~~~~~~--p~~~~~~~~w~~~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L   74 (307)
                      +||++-  |.+-+-+|.=|-.....-.||.+|..+|-+||.++|.+    +..|+.++|.|..+||+..|..-
T Consensus       341 e~E~veen~~ar~vts~t~g~~~~~~~Ws~~e~ekFYKALs~wGtd----F~LIs~lfP~R~RkqIKaKfi~E  409 (507)
T COG5118         341 EMEVVEENPFARIVTSSTFGKKKGALRWSKKEIEKFYKALSIWGTD----FSLISSLFPNRERKQIKAKFIKE  409 (507)
T ss_pred             HHHHhhccchhheeecccccCCCCCCcccHHHHHHHHHHHHHhcch----HHHHHHhcCchhHHHHHHHHHHH
Confidence            566664  55444333333344566789999999999999999986    99999999999999999999753

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=95.00  E-value=0.062  Score=45.28  Aligned_cols=55  Identities=20%  Similarity=0.360  Sum_probs=45.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCC------------CCCHHHHHHHHHHHHHhh
Q 021816           24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIP------------GKTVVDVIKQYKELEADI   78 (307)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vP------------GRT~~qc~~rY~~L~~dV   78 (307)
                      ..+..+|+|||.-|...+..||.++++.|++|-..|-            .||+.++.+|-..|+.-|
T Consensus        47 ~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (118)
T PF09111_consen   47 NKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI  113 (118)
T ss_dssp             SS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred             CCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence            3467899999999999999999988999999988773            899999999999887643

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=94.43  E-value=0.074  Score=41.05  Aligned_cols=49  Identities=29%  Similarity=0.471  Sum_probs=33.9

Q ss_pred             CCCHHHHHHHHHHHHH------hCC-C------chhcchhccc----CCCCHHHHHHHHHHHHHHHh
Q 021816          136 PWTEEEHKLFLLGLKK------HGK-G------DWRNISRNFV----TSRTPTQVASHAQKYFIRQL  185 (307)
Q Consensus       136 pWT~EEd~llL~~l~k------yG~-G------~W~~Ia~~~v----~tRT~~Qv~sh~qky~~r~~  185 (307)
                      .||.+|..+||..+..      ++. +      .|..||. .+    ..||+.||+.+|.....+-.
T Consensus         3 ~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~-~l~~~G~~rt~~qc~~Kw~~L~~~Yk   68 (90)
T PF13837_consen    3 NWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAE-ELAEHGYNRTPEQCRNKWKNLKKKYK   68 (90)
T ss_dssp             SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHH-HHHHHC----HHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            6999999999999888      321 1      4999996 44    37999999999987555444

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=94.32  E-value=0.075  Score=40.44  Aligned_cols=54  Identities=11%  Similarity=0.339  Sum_probs=43.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC---C----------CChhHHHHHhhCC-----CCCHHHHHHHHHHHHHhhh
Q 021816           26 STRWTAAENKMFENALAVYDK---D----------SPDRWQKVAAMIP-----GKTVVDVIKQYKELEADIS   79 (307)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~---~----------tpdRW~kIAa~vP-----GRT~~qc~~rY~~L~~dV~   79 (307)
                      ...||.+|...|.+.|..|..   +          ...-|+.||..|.     .||+.||+++|..+...++
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~K   73 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAK   73 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence            467999999999999998741   1          1236999999883     4999999999999887654

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=94.03  E-value=0.074  Score=40.34  Aligned_cols=49  Identities=22%  Similarity=0.303  Sum_probs=31.8

Q ss_pred             CCCCHHHHHHHHHHHHHhC------CC--chhcchhcccCCCCHHHHHHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHG------KG--DWRNISRNFVTSRTPTQVASHAQKYFIR  183 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG------~G--~W~~Ia~~~v~tRT~~Qv~sh~qky~~r  183 (307)
                      +++|+|||..|+.-|..+.      .|  -|+.++...+..+|-...++||.|.+..
T Consensus         3 ~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~   59 (65)
T PF08914_consen    3 TPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRG   59 (65)
T ss_dssp             ----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT--
T ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence            5899999999999997653      23  3999998555589999999998766544

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>KOG4329 consensus DNA-binding protein [General function prediction only]

Probab=92.39  E-value=0.21  Score=49.64  Aligned_cols=48  Identities=23%  Similarity=0.511  Sum_probs=40.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHH-HhhCCCCCHHHHHHHHHHHH
Q 021816           24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKV-AAMIPGKTVVDVIKQYKELE   75 (307)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kI-Aa~vPGRT~~qc~~rY~~L~   75 (307)
                      ..-..|+++|=+.|+..|..||++    +..| |..|+.|++.+|+..|...+
T Consensus       275 d~l~~wsEeEcr~FEegl~~yGKD----F~lIr~nkvrtRsvgElVeyYYlWK  323 (445)
T KOG4329|consen  275 DDLSGWSEEECRNFEEGLELYGKD----FHLIRANKVRTRSVGELVEYYYLWK  323 (445)
T ss_pred             cccccCCHHHHHHHHHHHHHhccc----HHHHHhcccccchHHHHHHHHHHhh
Confidence            345679999999999999999987    7766 56799999999999987544

>PLN03162 golden-2 like transcription factor; Provisional

Probab=92.14  E-value=0.32  Score=48.49  Aligned_cols=56  Identities=30%  Similarity=0.334  Sum_probs=41.9

Q ss_pred             cccCCCCCCHHHHHHHHHHHHHhCCC--chhcchh-cccCCCCHHHHHHHHHHHHHHHh
Q 021816          130 ERKKGVPWTEEEHKLFLLGLKKHGKG--DWRNISR-NFVTSRTPTQVASHAQKYFIRQL  185 (307)
Q Consensus       130 erkKg~pWT~EEd~llL~~l~kyG~G--~W~~Ia~-~~v~tRT~~Qv~sh~qky~~r~~  185 (307)
                      .+|.+..||+|=|+.|+++|.+.|..  -=+.|-+ --|++=|..+|+||-|||...++
T Consensus       233 ~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk  291 (526)
T PLN03162        233 KKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRR  291 (526)
T ss_pred             CCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcc
Confidence            44566789999999999999999941  1233332 02578899999999999976553

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=91.34  E-value=0.5  Score=36.88  Aligned_cols=52  Identities=17%  Similarity=0.364  Sum_probs=40.0

Q ss_pred             CCCHHHHHHHHHHHHHh------C-CCC--ChhHHHHHhhCC-----CCCHHHHHHHHHHHHHhhh
Q 021816           28 RWTAAENKMFENALAVY------D-KDS--PDRWQKVAAMIP-----GKTVVDVIKQYKELEADIS   79 (307)
Q Consensus        28 ~WT~EEdk~Le~Ala~y------~-~~t--pdRW~kIAa~vP-----GRT~~qc~~rY~~L~~dV~   79 (307)
                      .||+++++.|.+++...      + .+.  +.-|..|++.|-     ..|..||..||..|..+-.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~   66 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYR   66 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHH
Confidence            49999999999988643      1 111  457999998885     3689999999999887643

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=89.66  E-value=0.48  Score=47.41  Aligned_cols=46  Identities=24%  Similarity=0.429  Sum_probs=41.1

Q ss_pred             ccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHH
Q 021816          131 RKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQ  178 (307)
Q Consensus       131 rkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~q  178 (307)
                      +++..+||.+|-++|-.+|...|- ++..||. ++|+|...||+-.+.
T Consensus       362 ~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~-lfP~R~RkqIKaKfi  407 (507)
T COG5118         362 KKGALRWSKKEIEKFYKALSIWGT-DFSLISS-LFPNRERKQIKAKFI  407 (507)
T ss_pred             CCCCCcccHHHHHHHHHHHHHhcc-hHHHHHH-hcCchhHHHHHHHHH
Confidence            445668999999999999999999 9999996 999999999998543

>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]

Probab=88.70  E-value=0.56  Score=49.27  Aligned_cols=50  Identities=28%  Similarity=0.437  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcc---------hhcccCCCCHHHHHHHHHHHHHHHh
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNI---------SRNFVTSRTPTQVASHAQKYFIRQL  185 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~I---------a~~~v~tRT~~Qv~sh~qky~~r~~  185 (307)
                      +.||-.|+.-|..||+.+|+ ++.+|         +..-+..+|.-||+-||.+..++++
T Consensus        89 taWt~~E~~~Ffdal~~~GK-dFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~  147 (782)
T KOG4468|consen   89 TAWTHQEEESFFDALRQVGK-DFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMN  147 (782)
T ss_pred             cccchhhHHHHHHHHHHhcc-cHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHH
Confidence            47999999999999999999 99999         1124677889999999877666664

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=88.44  E-value=1.5  Score=33.12  Aligned_cols=49  Identities=20%  Similarity=0.340  Sum_probs=38.3

Q ss_pred             CCCHHHHHHHHHHHHHh-----CCC-----------chhcchhcc----cCCCCHHHHHHHHHHHHHHH
Q 021816          136 PWTEEEHKLFLLGLKKH-----GKG-----------DWRNISRNF----VTSRTPTQVASHAQKYFIRQ  184 (307)
Q Consensus       136 pWT~EEd~llL~~l~ky-----G~G-----------~W~~Ia~~~----v~tRT~~Qv~sh~qky~~r~  184 (307)
                      .||.+|-+.|++.|++|     |+.           -|..|+..+    .+.||..|++..|.++-...
T Consensus         4 ~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~   72 (78)
T PF13873_consen    4 NFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA   72 (78)
T ss_pred             CCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence            69999999999999997     421           499998422    24799999999998875544

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=88.19  E-value=0.45  Score=48.76  Aligned_cols=43  Identities=28%  Similarity=0.489  Sum_probs=39.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHH
Q 021816          134 GVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHA  177 (307)
Q Consensus       134 g~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~  177 (307)
                      -..|+.-|-.+|.++|+|||+ ++..|...|+|=++-..|-.+|
T Consensus       285 mEEWSasEanLFEeALeKyGK-DFndIrqdfLPWKSl~sIveyY  327 (693)
T KOG3554|consen  285 MEEWSASEANLFEEALEKYGK-DFNDIRQDFLPWKSLTSIVEYY  327 (693)
T ss_pred             hhhccchhhHHHHHHHHHhcc-cHHHHHHhhcchHHHHHHHHHH
Confidence            347999999999999999999 9999999999999999888764

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=87.62  E-value=1.9  Score=46.46  Aligned_cols=41  Identities=32%  Similarity=0.374  Sum_probs=38.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHA  177 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~  177 (307)
                      .-||+.|-++|-.+|..|-+ ++..|+. .|+++|..||-.+|
T Consensus       620 d~WTp~E~~lF~kA~y~~~K-DF~~v~k-m~~~KtVaqCVeyY  660 (907)
T KOG4167|consen  620 DKWTPLERKLFNKALYTYSK-DFIFVQK-MVKSKTVAQCVEYY  660 (907)
T ss_pred             ccccHHHHHHHHHHHHHhcc-cHHHHHH-HhccccHHHHHHHH
Confidence            46999999999999999999 9999997 99999999999874

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=87.62  E-value=0.7  Score=41.45  Aligned_cols=51  Identities=8%  Similarity=0.244  Sum_probs=39.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCC---hhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816           25 KSTRWTAAENKMFENALAVYDKDSP---DRWQKVAAMIPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~tp---dRW~kIAa~vPGRT~~qc~~rY~~L~~   76 (307)
                      ....||.|||.+|.+.|..|.....   +-.+.++..| +||+..|-.||+..+.
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vr   57 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVR   57 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHH
Confidence            3457999999999999998876442   3466777777 7999999999965443

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=87.47  E-value=0.69  Score=41.13  Aligned_cols=50  Identities=10%  Similarity=0.235  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCC---ChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816           26 STRWTAAENKMFENALAVYDKDS---PDRWQKVAAMIPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~t---pdRW~kIAa~vPGRT~~qc~~rY~~L~~   76 (307)
                      .-.||.|||.+|-+.|-.|=...   -.-++.|+..| +||+.-|-=||+..+.
T Consensus         4 QDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VR   56 (161)
T TIGR02894         4 QDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVR   56 (161)
T ss_pred             ccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHH
Confidence            45799999999999998874332   13488999998 7999999999987765

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=86.94  E-value=0.53  Score=47.16  Aligned_cols=48  Identities=19%  Similarity=0.343  Sum_probs=40.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhh-----CCC-CCHHHHHHHHHHHHHhh
Q 021816           27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAM-----IPG-KTVVDVIKQYKELEADI   78 (307)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~-----vPG-RT~~qc~~rY~~L~~dV   78 (307)
                      ..||.||...|-+++..|+.    ||..||-.     ++. ||++|+++||..+...+
T Consensus       131 n~WskeETD~LF~lck~fDL----Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l  184 (445)
T KOG2656|consen  131 NSWSKEETDYLFDLCKRFDL----RFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKL  184 (445)
T ss_pred             ccccHHHHHHHHHHHHhcCe----eEEEEeeccchhhccccccHHHHHHHHHHHHHHH
Confidence            56999999999999999996    57777766     666 99999999999876654

>KOG1878 consensus Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains [Transcription]

Probab=85.91  E-value=0.44  Score=54.27  Aligned_cols=44  Identities=23%  Similarity=0.474  Sum_probs=37.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 021816           25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYK   72 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~   72 (307)
                      ....|+.+|-+.|+.-++.|.++    ...||.+|..||+.||.-.|.
T Consensus       224 ~~n~Ws~~Ek~~fk~rf~~H~kn----f~~~as~~erkSv~d~vlfyy  267 (1672)
T KOG1878|consen  224 RMNEWSPEEKELFKSRFAQHVKN----FGLIASFFERKSVSDCVLFYY  267 (1672)
T ss_pred             HhhhccccccccccchhhhcCcc----hhhhhhhhcccchhhceeeee
Confidence            45689999999999988888764    889999999999999986654

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=85.83  E-value=0.81  Score=40.68  Aligned_cols=49  Identities=24%  Similarity=0.402  Sum_probs=39.0

Q ss_pred             CCCCHHHHHHHHHHHHHhC-CC-----chhcchhcccCCCCHHHHHHHHHHHHHHHh
Q 021816          135 VPWTEEEHKLFLLGLKKHG-KG-----DWRNISRNFVTSRTPTQVASHAQKYFIRQL  185 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG-~G-----~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~  185 (307)
                      ..||.|||.+|-+.|-+|= .|     -+..+++  --+||+..|.-||+.|.+++.
T Consensus         5 DAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~--~L~RTsAACGFRWNs~VRkqY   59 (161)
T TIGR02894         5 DAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGR--ALNRTAAACGFRWNAYVRKQY   59 (161)
T ss_pred             cccccHHHHHHHHHHHHHHhcchHHHHHHHHHHH--HHcccHHHhcchHHHHHHHHH
Confidence            3699999999999988873 22     3555554  359999999999999998874

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]

Probab=84.13  E-value=2  Score=45.36  Aligned_cols=54  Identities=30%  Similarity=0.413  Sum_probs=43.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCChhHHHH----------HhhCCCCCHHHHHHHHHHHHHhhhhhh
Q 021816           25 KSTRWTAAENKMFENALAVYDKDSPDRWQKV----------AAMIPGKTVVDVIKQYKELEADISNIE   82 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kI----------Aa~vPGRT~~qc~~rY~~L~~dV~~IE   82 (307)
                      ..+.||-.|...|-.||..+|++    +++|          -..+--||..||+.+|..++..+....
T Consensus        87 ~ktaWt~~E~~~Ffdal~~~GKd----Fe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k~~  150 (782)
T KOG4468|consen   87 AKTAWTHQEEESFFDALRQVGKD----FEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNKLL  150 (782)
T ss_pred             cccccchhhHHHHHHHHHHhccc----HHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHhhh
Confidence            35689999999999999999987    8888          333446899999999998877665444

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=83.02  E-value=3  Score=31.57  Aligned_cols=51  Identities=12%  Similarity=0.210  Sum_probs=33.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-----CCChhHHHHHhhCC-CCCHHHHHHHHHHHHH
Q 021816           26 STRWTAAENKMFENALAVYDK-----DSPDRWQKVAAMIP-GKTVVDVIKQYKELEA   76 (307)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~-----~tpdRW~kIAa~vP-GRT~~qc~~rY~~L~~   76 (307)
                      +...|.|||.+|..-|+.+..     ....-|..+|+.-| ..|-.--++||.+-+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~   58 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLR   58 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            457899999999999976532     22567999999988 7899999999976543

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=82.93  E-value=3.1  Score=32.32  Aligned_cols=48  Identities=27%  Similarity=0.508  Sum_probs=33.6

Q ss_pred             CCCHHHHHHHHHHHHHh---C----CC-----chhcchhccc----CCCCHHHHHHHHHHHHHHH
Q 021816          136 PWTEEEHKLFLLGLKKH---G----KG-----DWRNISRNFV----TSRTPTQVASHAQKYFIRQ  184 (307)
Q Consensus       136 pWT~EEd~llL~~l~ky---G----~G-----~W~~Ia~~~v----~tRT~~Qv~sh~qky~~r~  184 (307)
                      .||+++++.||+++...   |    .+     .|..|+..|.    ...|..||++|++ .+++.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~-~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWK-TLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHH-HHHHH
Confidence            39999999999998663   2    22     3888874222    3467889999987 44444

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=82.77  E-value=1.5  Score=45.10  Aligned_cols=45  Identities=29%  Similarity=0.672  Sum_probs=38.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCChhHHHH-HhhCCCCCHHHHHHHHHHHH
Q 021816           27 TRWTAAENKMFENALAVYDKDSPDRWQKV-AAMIPGKTVVDVIKQYKELE   75 (307)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kI-Aa~vPGRT~~qc~~rY~~L~   75 (307)
                      -+|+..|-.+||+||.+||++    +..| +.++|-|+..++++.|....
T Consensus       286 EEWSasEanLFEeALeKyGKD----FndIrqdfLPWKSl~sIveyYYmwK  331 (693)
T KOG3554|consen  286 EEWSASEANLFEEALEKYGKD----FNDIRQDFLPWKSLTSIVEYYYMWK  331 (693)
T ss_pred             hhccchhhHHHHHHHHHhccc----HHHHHHhhcchHHHHHHHHHHHHHh
Confidence            379999999999999999997    5544 66789999999999887543

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=81.19  E-value=1.9  Score=48.36  Aligned_cols=47  Identities=21%  Similarity=0.475  Sum_probs=41.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHH
Q 021816          136 PWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIR  183 (307)
Q Consensus       136 pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r  183 (307)
                      .||.-+=..|+.+..+||+.+...||. .|.++|+.+|+.+++-|..|
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~-~~~~k~~~ev~~y~~~f~~~  872 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIAS-EMEGKTEEEVERYAKVFWER  872 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHH-HhcCCCHHHHHHHHHHHHHh
Confidence            399999999999999999999999997 99999999999887766544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	307
2cjj_A	93	Crystal Structure Of The Myb Domain Of The Rad Tran		1e-14
2m2e_A	73	Solution Nmr Structure Of The Sant Domain Of Human		1e-07
4eef_G	74	Crystal Structure Of The Designed Inhibitor Protein		1e-05

>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad Transcription Factor From Antirrhinum Majus Length = 93

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 43/63 (68%)
Query: 29 WTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPL 88
          W+A ENK FE ALAVYDKD+PDRW  VA  + G+T  +V K Y+ L  DI  IE+G +P 
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70
Query: 89 PGY 91
          P Y
Sbjct: 71 PNY 73

>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human Dnajc2, Northeast Structural Genomics Consortium Target Hr8254a Length = 73

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKEL 74
          T WT  E K+ E AL  Y  ++P+RW+K+A  +PG+T  D +K+YKEL
Sbjct: 4  TPWTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRYKEL 51

>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein F-Hb80.4 In Complex With The 1918 Influenza Virus Hemagglutinin. Length = 74

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 29 WTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELE 75
          W  +EN  FE AL+  +KD+PDRW+KVA  + G+T  +V K Y ELE
Sbjct: 23 WKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY-ELE 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	307
2cjj_A	93	Radialis; plant development, DNA-binding protein,	3e-32
2cjj_A	93	Radialis; plant development, DNA-binding protein,	4e-04
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	2e-25
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	3e-06
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	7e-25
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	2e-04
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	2e-21
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	5e-07
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	3e-19
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	2e-06
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	5e-15
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	2e-14
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	4e-13
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	6e-07
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	3e-12
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	4e-07
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	5e-11
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	8e-11
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	5e-10
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	4e-04
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	2e-09
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	2e-09
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	6e-08
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	1e-06
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	2e-07
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	3e-07
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	5e-07
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	7e-07
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	2e-06
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	3e-06
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	1e-05
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	6e-04
2crg_A	70	Metastasis associated protein MTA3; transcription	2e-04
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	3e-04
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	4e-04
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	6e-04
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	7e-04
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	9e-04

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93

 Score =  114 bits (286), Expect = 3e-32
 Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 22  EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNI 81
                  W+A ENK FE ALAVYDKD+PDRW  VA  + G+T  +V K Y+ L  DI  I
Sbjct: 4   TRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYI 63

Query: 82  EAGLIPLPGYGNSSPFTLEWVNN 104
           E+G +P P Y  ++   ++    
Sbjct: 64  ESGKVPFPNY-RTTGGNMKTDEK 85

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 130 ERKKGVPWTEEEHKLFLLGLKKHGKGD---WRNISRNFVTSRTPTQVASH 176
            R  G PW+ +E+K F   L  + K     W N++R  V  RTP +V  H
Sbjct: 4   TRGSGRPWSAKENKAFERALAVYDKDTPDRWANVAR-AVEGRTPEEVKKH 52

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 95.6 bits (238), Expect = 2e-25
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 127 AEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLS 186
           +       V WT EE +LF  GL K G+  W  IS+  + SRT  QV S+A++YF  ++ 
Sbjct: 2   SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVK 59

Query: 187 GGKDKRRAS 195
            G DK   +
Sbjct: 60  CGLDKETPN 68

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 22 EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDV 67
              S +WT  E ++FE  LA + +     W K++ +I  +TV+ V
Sbjct: 5  SSGYSVKWTIEEKELFEQGLAKFGRR----WTKISKLIGSRTVLQV 46

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Length = 74

 Score = 94.2 bits (234), Expect = 7e-25
 Identities = 22/68 (32%), Positives = 32/68 (47%)

Query: 11 ASYISSSNWLLEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQ 70
                S+          W  +EN  FE AL+  +KD+PDRW+KVA  + G+T  +V K 
Sbjct: 5  DDDDKGSHMASTRGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKH 64

Query: 71 YKELEADI 78
          Y+      
Sbjct: 65 YELEHHHH 72

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Length = 74

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 130 ERKKGVPWTEEEHKLFLLGLKKHGKGD---WRNISRNFVTSRTPTQVASH 176
            R  G PW   E+  F + L    K     W+ +++  V  RTP +V  H
Sbjct: 16  TRGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQY-VKGRTPEEVKKH 64

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 85.3 bits (211), Expect = 2e-21
 Identities = 21/58 (36%), Positives = 29/58 (50%)

Query: 22 EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADIS 79
            S    WT  + K+ E AL  Y + S D W K+A  +P K+  D I +YK L +  S
Sbjct: 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGPS 71

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 45.6 bits (108), Expect = 5e-07
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 117 GGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGD---WRNISRNFVTSRTPTQV 173
           G   SS     E  R    PWT+ + KL  L L+++ +G    W  I+R  V S++    
Sbjct: 1   GSSGSSGSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR-CVPSKSKEDC 59

Query: 174 ASHAQKYFIRQLSGG 188
            +   K  +   S G
Sbjct: 60  IARY-KLLVSGPSSG 73

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 79.6 bits (196), Expect = 3e-19
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 127 AEHERKKGVPWTEEEHKLFLLGLKKHGKGD-----WRNISRNFVTSRTPTQVASHAQKYF 181
                     WT EE K     L K+   +     W+ I+   + +RT  QVAS  QKYF
Sbjct: 1   GSSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADE-LGNRTAKQVASQVQKYF 59

Query: 182 IRQLSGGKDKRRAS 195
           I+    G      S
Sbjct: 60  IKLTKAGIPVSGPS 73

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 22 EESKSTRWTAAENKMFENALAVYDKDSPD--RWQKVAAMIPGKTVVDVIKQYKE 73
            S +  WT  E K  E  L  Y  +  +  RWQK+A  +  +T   V  Q ++
Sbjct: 4  GSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQK 57

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 67.4 bits (165), Expect = 5e-15
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 136 PWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLSG 187
            WT +E    L  +   G G+W++++ N + ++T  +   H  KYF    SG
Sbjct: 10  SWTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYFSGPSSG 60

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 65.9 bits (161), Expect = 2e-14
 Identities = 12/56 (21%), Positives = 22/56 (39%)

Query: 127 AEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFI 182
           +         W  +E  L +   +  G G+W +I+     +RT  +   H  K +I
Sbjct: 2   SSGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 63.0 bits (153), Expect = 4e-13
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 125 RPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQ 184
             +  E      WTEEE      GL +HG+ +W  I+R  V S+T +Q  +    Y  RQ
Sbjct: 7   HSSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIAR-MVGSKTVSQCKNFYFNYKKRQ 64

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 46.1 bits (109), Expect = 6e-07
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 22 EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQY 71
          E      WT  E    +  L  + ++    W  +A M+  KTV      Y
Sbjct: 12 ENLYFQGWTEEEMGTAKKGLLEHGRN----WSAIARMVGSKTVSQCKNFY 57

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 60.7 bits (147), Expect = 3e-12
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 117 GGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASH 176
           G   SS           G  WTE+E  L L  L+ +   DW  +S   V SRT  +   H
Sbjct: 1   GSSGSSGTLAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVS-EHVGSRTQDECILH 58

Query: 177 AQKYFI 182
             +  I
Sbjct: 59  FLRLPI 64

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 46.0 bits (109), Expect = 4e-07
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 9/74 (12%)

Query: 22 EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNI 81
            S    WT  E  +   AL +Y  D    W KV+  +  +T  + I  +  L      I
Sbjct: 14 GASAGREWTEQETLLLLEALEMYKDD----WNKVSEHVGSRTQDECILHFLRLP-----I 64

Query: 82 EAGLIPLPGYGNSS 95
          E   +     G SS
Sbjct: 65 EDPYLENSDSGPSS 78

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 56.6 bits (137), Expect = 5e-11
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 128 EHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNF-VTSRTPTQ 172
                K   WT EE +    G++K+G+G+W  IS+N+   +RT   
Sbjct: 5   TTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVM 50

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 56.2 bits (135), Expect = 8e-11
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 23 ESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIE 82
           S +  WT  +      ++  +   +P RW+K+A  + G++V DV  + K+L+  ++   
Sbjct: 5  SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCS- 62

Query: 83 AGLIPLPGYG 92
           G++  P  G
Sbjct: 63 PGMVSGPSSG 72

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235

 Score = 57.9 bits (138), Expect = 5e-10
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 2/99 (2%)

Query: 124 VRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIR 183
            R  E  +K    WT EE  L +  ++K+G+ D++ IS   + +++  QV +    Y  R
Sbjct: 123 YRLPEVIQKCNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRR 180

Query: 184 QLSGGKDKRRASIHDITTVNLNETRTSSPDTQRAPSPEQ 222
                  +   + H     N    +        +    +
Sbjct: 181 FNIDEVLQEWEAEHGKEETNGPSNQKPVKSPDNSIKMPE 219

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 22  EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQY 71
            +  + RWT  E  +   A+  Y +D    +Q ++ +I  K+VV V   +
Sbjct: 129 IQKCNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFF 174

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 52.1 bits (125), Expect = 2e-09
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 126 PAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFV-TSRTPTQ 172
           P +H  +K   W  EE K    G++K+G+G+W  I  ++   +RT   
Sbjct: 2   PEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVM 49

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 53.2 bits (127), Expect = 2e-09
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 4/76 (5%)

Query: 123 SVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNF---VTSRTPTQVASHAQK 179
           S    + +R+   P++  E +  +  ++K G G WR++          RT   +     K
Sbjct: 2   SHMLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDK-WK 60

Query: 180 YFIRQLSGGKDKRRAS 195
             +        +RR  
Sbjct: 61  TLVHTAKISPQQRRGE 76

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61

 Score = 47.8 bits (114), Expect = 6e-08
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 16 SSNWLLEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQY 71
          SS    +      WT  E ++F++    + K+    +  +A+ +  K+V D +  Y
Sbjct: 2  SSGSSGDRQFMNVWTDHEKEIFKDKFIQHPKN----FGLIASYLERKSVPDCVLYY 53

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 8/50 (16%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 127 AEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASH 176
           +  +R+    WT+ E ++F     +H K ++  I+  ++  ++      +
Sbjct: 5   SSGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIAS-YLERKSVPDCVLY 52

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 121 SSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNF---VTSRTPTQVASHA 177
           S S RP   +R+   P+T  E +L +  ++  G G WR++       V  RT   +    
Sbjct: 18  SRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKW 77

Query: 178 QKYFIRQLSGGKDKRRASI 196
           +          + +R A +
Sbjct: 78  KTLVHTASIAPQQRRGAPV 96

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94

 Score = 46.8 bits (111), Expect = 3e-07
 Identities = 11/78 (14%), Positives = 28/78 (35%), Gaps = 12/78 (15%)

Query: 1  MKWETEVISPASYISSSN-------WLLEESKSTRWTAAENKMFENALAVYDKDSPDRWQ 53
          M ++ +      +I+ +           +      W+  E + F      + K+    + 
Sbjct: 12 MLYDADQ-QRIKFINMNGLMADPMKVYKDRQVMNMWSEQEKETFREKFMQHPKN----FG 66

Query: 54 KVAAMIPGKTVVDVIKQY 71
           +A+ +  KTV + +  Y
Sbjct: 67 LIASFLERKTVAECVLYY 84

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94

 Score = 46.0 bits (109), Expect = 5e-07
 Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 128 EHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASH 176
             +R+    W+E+E + F     +H K ++  I+      +T  +   +
Sbjct: 37  YKDRQVMNMWSEQEKETFREKFMQHPK-NFGLIASFLER-KTVAECVLY 83

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 44.6 bits (106), Expect = 7e-07
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 136 PWTEEEHKLFLLGLKKHGKGDWRNISRNF-VTSRTPTQ 172
            WT EE +    G++K+G+G+W  IS+N+   +RT   
Sbjct: 4   KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVM 41

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 132 KKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFV-TSRTPTQ 172
           K+   W  EE K    G++K+G+G+W  I  ++   +RT   
Sbjct: 1   KRQ-AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVM 41

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 44.8 bits (105), Expect = 3e-06
 Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 3/80 (3%)

Query: 120 RSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNF---VTSRTPTQVASH 176
              S R    +R+   P++  E +  +  ++  G G WR++          RT   +   
Sbjct: 3   NQKSKRSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDK 62

Query: 177 AQKYFIRQLSGGKDKRRASI 196
            +          + +R   +
Sbjct: 63  WKTLVHTASIAPQQRRGEPV 82

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 136 PWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQV 173
            WTE+E K F+ GL+++GK ++  I +  + ++   ++
Sbjct: 11  CWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGEL 47

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 28 RWTAAENKMFENALAVYDKDSPDRWQKVAA-MIPGKTVVDVIKQY 71
           WT  E K F   L  Y K+    + ++   ++P K   ++I  Y
Sbjct: 11 CWTEDEVKRFVKGLRQYGKN----FFRIRKELLPNKETGELITFY 51

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Length = 70

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 136 PWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQV 173
            W+  E  LF   L+K+GK D+ +I ++F+  ++ T +
Sbjct: 10  EWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSI 46

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 136 PWTEEEHKLFLLGLKKHGKGDWRNISRNF---VTSRTPTQVASHAQKYFIRQLSGGKDKR 192
           P++  E +  +  ++  G G WR++          RT   +    +          + +R
Sbjct: 2   PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 193 RASI 196
              +
Sbjct: 62  GEPV 65

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 132 KKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQ 172
            K   WT EE +     ++++G  DW+ I+  ++ +RT  Q
Sbjct: 2   GKT-RWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQ 40

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 57/146 (39%)

Query: 27  TRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLI 86
           TRWT  E++  +      +++  D W+ +A  +P +T V    +                
Sbjct: 7   TRWTREEDEKLKKL---VEQNGTDDWKVIANYLPNRTDVQCQHR---------------- 47

Query: 87  PLPGYGNSSPFTLEWVNNHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFL 146
                         W                      + P   E  KG PWT+EE +  +
Sbjct: 48  --------------WQK-------------------VLNP---ELIKG-PWTKEEDQRVI 70

Query: 147 LGLKKHGKGDWRNISRNFVTSRTPTQ 172
             ++K+G   W  I++  +  R   Q
Sbjct: 71  KLVQKYGPKRWSVIAK-HLKGRIGKQ 95

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 36.4 bits (84), Expect = 7e-04
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 9/59 (15%)

Query: 131 RKKGVPWTEEEHKLFL-----LGLKK-HGKGDWRNISRNFVTSRTPTQVASHAQKYFIR 183
           +K  V WT E H  FL     LG+++   K     ++ + +T      VASH QK+ + 
Sbjct: 4   KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRE---NVASHLQKFRVA 59

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 36.5 bits (85), Expect = 9e-04
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 132 KKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQ 172
           K G  W   E ++    + K+GK  W  I+   +  ++  Q
Sbjct: 8   KGG-VWRNTEDEILKAAVMKYGKNQWSRIAS-LLHRKSAKQ 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	307
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.92
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.92
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.91
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.9
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.9
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.87
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.86
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.79
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	99.79
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.68
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	99.63
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.63
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.62
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	99.59
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	99.58
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	99.51
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.5
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.5
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.49
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.47
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.45
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.44
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.43
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.43
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.42
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.41
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.4
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.39
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.35
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.33
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.33
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.31
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.29
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.29
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.28
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.28
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.94
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.26
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.26
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.25
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.24
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.24
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.23
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.23
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.19
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.18
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.18
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.16
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.16
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.16
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.15
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	99.11
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.11
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	99.11
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.1
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.09
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.07
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.06
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.05
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.05
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.04
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.01
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.93
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.92
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.9
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	98.88
2crg_A	70	Metastasis associated protein MTA3; transcription	98.82
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.8
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.29
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	98.8
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	98.71
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.71
2crg_A	70	Metastasis associated protein MTA3; transcription	98.68
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	98.62
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	98.57
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.51
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.5
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	98.47
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	98.41
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	97.89
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.85
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	97.82
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.75
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.74
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.65
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.53
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	97.47
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.51
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.16
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.91
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.61
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	96.51
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	95.93
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	95.84
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	95.02
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	94.15
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	89.25

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.92  E-value=5.9e-25  Score=178.21  Aligned_cols=102  Identities=16%  Similarity=0.392  Sum_probs=91.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchhhhccCC
Q 021816           27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNNHG  106 (307)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~~~~~~~  106 (307)
                      +.||+|||.+|..+|..|+..   +|..||..|||||..||++||..+++            |.+               
T Consensus         2 ~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~------------p~i---------------   51 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRYGAK---DWIRISQLMITRNPRQCRERWNNYIN------------PAL---------------   51 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHHCSS---CHHHHHHHTTTSCHHHHHHHHHHHSS------------SCC---------------
T ss_pred             CCCCHHHHHHHHHHHHHHCCC---CHHHHhhhcCCCCHHHHHHHHHHHHc------------ccc---------------
Confidence            579999999999999999964   59999999999999999999998765            332               


Q ss_pred             CCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHHHhc
Q 021816          107 YDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLS  186 (307)
Q Consensus       107 ~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~s  186 (307)
                                                +.++||+|||.+|+.++.+||. +|..||+ +|++||+.||++||..+.++...
T Consensus        52 --------------------------~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~l~r~~~~  103 (107)
T 2k9n_A           52 --------------------------RTDPWSPEEDMLLDQKYAEYGP-KWNKISK-FLKNRSDNNIRNRWMMIARHRAK  103 (107)
T ss_dssp             --------------------------TTCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHHS
T ss_pred             --------------------------cccccCHHHHHHHHHHHHHhCc-CHHHHHH-HCCCCCHHHHHHHHHHHHhhHHH
Confidence                                      1248999999999999999998 9999997 99999999999999988877653

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.92  E-value=7.6e-25  Score=176.32  Aligned_cols=101  Identities=23%  Similarity=0.478  Sum_probs=88.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchhhhcc
Q 021816           25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNN  104 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~~~~~  104 (307)
                      ..+.||+|||++|..+|..||..   +|..||+.|||||..||++||..+++            |..             
T Consensus         3 ~k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~~-------------   54 (105)
T 1gv2_A            3 IKGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN------------PEV-------------   54 (105)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHTTC------------CCC-------------
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCC---cHHHHhhhhcCCCHHHHHHHHHhccC------------Ccc-------------
Confidence            46789999999999999999964   59999999999999999999988654            322             


Q ss_pred             CCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHH
Q 021816          105 HGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIR  183 (307)
Q Consensus       105 ~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r  183 (307)
                                                  +.++||+|||++|+.++++||. +|..||+ +||+||+.||++||+.++++
T Consensus        55 ----------------------------~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~~~~~  103 (105)
T 1gv2_A           55 ----------------------------KKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAIKNHWNSTMRR  103 (105)
T ss_dssp             ----------------------------CCCCCCHHHHHHHHHHHHHHSS-CHHHHHT-TCTTCCHHHHHHHHHHHTC-
T ss_pred             ----------------------------cccCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHHHHHhc
Confidence                                        2248999999999999999998 9999997 99999999999999876544

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.91  E-value=2.4e-24  Score=179.51  Aligned_cols=105  Identities=24%  Similarity=0.467  Sum_probs=92.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchhhhc
Q 021816           24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVN  103 (307)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~~~~  103 (307)
                      ...+.||+|||++|..+|+.|+.    +|..||..|||||..||++||...++            |..            
T Consensus         9 ~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~~Rt~~qcr~Rw~~~l~------------p~~------------   60 (126)
T 3osg_A            9 AKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFPNRNARQCRDRWKNYLA------------PSI------------   60 (126)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCTTCCHHHHHHHHHHHTS------------TTS------------
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHhhhcc------------ccc------------
Confidence            45788999999999999999986    49999999999999999999998764            322            


Q ss_pred             cCCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHH
Q 021816          104 NHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIR  183 (307)
Q Consensus       104 ~~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r  183 (307)
                                                   +.++||+|||++|+.++++||. +|..||. +|++||+.||++||..+.++
T Consensus        61 -----------------------------~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~l~~k  109 (126)
T 3osg_A           61 -----------------------------SHTPWTAEEDALLVQKIQEYGR-QWAIIAK-FFPGRTDIHIKNRWVTISNK  109 (126)
T ss_dssp             -----------------------------CCSCCCHHHHHHHHHHHHHHCS-CHHHHHT-TSTTCCHHHHHHHHHHHHHH
T ss_pred             -----------------------------ccccCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHh
Confidence                                         1248999999999999999998 9999997 99999999999999988887


Q ss_pred             HhcC
Q 021816          184 QLSG  187 (307)
Q Consensus       184 ~~s~  187 (307)
                      +..+
T Consensus       110 ~~~p  113 (126)
T 3osg_A          110 LGIP  113 (126)
T ss_dssp             TTC-
T ss_pred             cCCC
Confidence            7643

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.90  E-value=4.1e-24  Score=178.02  Aligned_cols=103  Identities=23%  Similarity=0.473  Sum_probs=90.2

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchh
Q 021816           21 LEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLE  100 (307)
Q Consensus        21 ~~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~  100 (307)
                      ......+.||+|||++|..+|..|+.+   +|..||..|||||..||++||..+++            |..         
T Consensus        22 ~p~~~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~~---------   77 (128)
T 1h8a_C           22 NPELNKGPWTKEEDQRVIEHVQKYGPK---RWSDIAKHLKGRIGKQCRERWHNHLN------------PEV---------   77 (128)
T ss_dssp             CTTCCCSCCCHHHHHHHHHHHHHTCSC---CHHHHHHHSSSCCHHHHHHHHHHTTC------------SSS---------
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhcCCcHHHHHHHHHHhcc------------ccc---------
Confidence            345567899999999999999999964   59999999999999999999987654            221         


Q ss_pred             hhccCCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHH
Q 021816          101 WVNNHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKY  180 (307)
Q Consensus       101 ~~~~~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky  180 (307)
                                                      +.++||+|||++|+.++++||. +|..||+ +||+||+.||++||..+
T Consensus        78 --------------------------------~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~r~~~~  123 (128)
T 1h8a_C           78 --------------------------------KKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAVKNHWNST  123 (128)
T ss_dssp             --------------------------------CCSCCCHHHHHHHHHHHHHHCS-CHHHHGG-GSTTCCHHHHHHHHHTT
T ss_pred             --------------------------------ccccCCHHHHHHHHHHHHHHCc-CHHHHHH-HCCCCCHHHHHHHHHHH
Confidence                                            2248999999999999999998 9999997 99999999999999865


Q ss_pred             H
Q 021816          181 F  181 (307)
Q Consensus       181 ~  181 (307)
                      +
T Consensus       124 ~  124 (128)
T 1h8a_C          124 M  124 (128)
T ss_dssp             T
T ss_pred             H
Confidence            4

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.90  E-value=5.4e-24  Score=178.28  Aligned_cols=102  Identities=16%  Similarity=0.389  Sum_probs=90.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchhhhccC
Q 021816           26 STRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNNH  105 (307)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~~~~~~  105 (307)
                      .+.||+|||++|..+|..|+..   +|..||..|||||..||++||...++            |..              
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~l~------------p~~--------------   52 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQ---NWPRITSFLPNRSPKQCRERWFNHLD------------PAV--------------   52 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSC---CGGGGTTSCTTSCHHHHHHHHHHHTS------------TTC--------------
T ss_pred             CCCCCHHHHHHHHHHHHHhCcC---CHHHHHHHHCCCCHHHHHHHHhhccC------------ccc--------------
Confidence            4689999999999999999965   49999999999999999999998765            322              


Q ss_pred             CCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHHHh
Q 021816          106 GYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQL  185 (307)
Q Consensus       106 ~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~  185 (307)
                                                 +.++||+|||++|+.++.+||. +|..||. +|++||+.||++||+.++.+..
T Consensus        53 ---------------------------~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~~l~~~~  103 (131)
T 3zqc_A           53 ---------------------------VKHAWTPEEDETIFRNYLKLGS-KWSVIAK-LIPGRTDNAIKNRWNSSISKRI  103 (131)
T ss_dssp             ---------------------------CCSCCCHHHHHHHHHHHHHSCS-CHHHHTT-TSTTCCHHHHHHHHHHTTGGGC
T ss_pred             ---------------------------cCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHHh
Confidence                                       1248999999999999999998 9999997 9999999999999998876654

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.87  E-value=3.3e-22  Score=172.00  Aligned_cols=102  Identities=23%  Similarity=0.469  Sum_probs=89.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchhh
Q 021816           22 EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEW  101 (307)
Q Consensus        22 ~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~~  101 (307)
                      .....+.||+|||.+|..++..|+..   +|..||..|||||..||++||..++.            |..          
T Consensus        54 p~~~~~~Wt~eEd~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~~----------  108 (159)
T 1h89_C           54 PELIKGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN------------PEV----------  108 (159)
T ss_dssp             TTCCCSCCCHHHHHHHHHHHHHHCSC---CHHHHHHTSTTCCHHHHHHHHHHTTC------------TTS----------
T ss_pred             CCcCCCCCChHHHHHHHHHHHHhCcc---cHHHHHHHcCCCCHHHHHHHHHHHhC------------ccc----------
Confidence            34467899999999999999999964   59999999999999999999987653            221          


Q ss_pred             hccCCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816          102 VNNHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF  181 (307)
Q Consensus       102 ~~~~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~  181 (307)
                                                     +..+||+|||++|+.++++||. +|..||+ +||+||+.||++||+.++
T Consensus       109 -------------------------------~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia~-~l~gRt~~~~knr~~~~~  155 (159)
T 1h89_C          109 -------------------------------KKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAIKNHWNSTM  155 (159)
T ss_dssp             -------------------------------CCSCCCHHHHHHHHHHHHHHCS-CHHHHHT-TSTTCCHHHHHHHHHTTT
T ss_pred             -------------------------------cccCCChHHHHHHHHHHHHHCC-CHHHHHH-HCCCCCHHHHHHHHHHHH
Confidence                                           2358999999999999999998 9999997 999999999999998553

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.86  E-value=1.4e-22  Score=174.37  Aligned_cols=100  Identities=23%  Similarity=0.467  Sum_probs=53.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchhhhcc
Q 021816           25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNN  104 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~~~~~  104 (307)
                      ..+.||+|||++|.++|..|+.+   +|..||+.|||||..||++||..+++            |..             
T Consensus         5 ~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~~-------------   56 (159)
T 1h89_C            5 GKTRWTREEDEKLKKLVEQNGTD---DWKVIANYLPNRTDVQCQHRWQKVLN------------PEL-------------   56 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTC------------TTC-------------
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHcCCCCHHHHHHHHHHccC------------CCc-------------
Confidence            46789999999999999999864   59999999999999999999987654            221             


Q ss_pred             CCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816          105 HGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF  181 (307)
Q Consensus       105 ~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~  181 (307)
                                                  +.++||+|||++|+.++++||.++|..||. ++++||+.||++||++|+
T Consensus        57 ----------------------------~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l  104 (159)
T 1h89_C           57 ----------------------------IKGPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL  104 (159)
T ss_dssp             ----------------------------CCSCCCHHHHHHHHHHHHHHCSCCHHHHHH-TSTTCCHHHHHHHHHHTT
T ss_pred             ----------------------------CCCCCChHHHHHHHHHHHHhCcccHHHHHH-HcCCCCHHHHHHHHHHHh
Confidence                                        224899999999999999999878999997 999999999999998774

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.79  E-value=1.6e-19  Score=144.14  Aligned_cols=69  Identities=51%  Similarity=0.890  Sum_probs=61.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCC
Q 021816           25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGN   93 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~   93 (307)
                      ....||+|||++|++||+.|+.++++||.+||++|||||+.||++||+.|++||..||+|.+++|.|..
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~~   75 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYRT   75 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC-----
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Confidence            457899999999999999999999999999999999999999999999999999999999999999953

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.79  E-value=1.5e-19  Score=137.99  Aligned_cols=66  Identities=24%  Similarity=0.574  Sum_probs=62.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCC
Q 021816           24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGY   91 (307)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y   91 (307)
                      +....||.|||++|++||++||.++|+||++||++| |||+.||++||+.|++|+ .||+|.|++|.|
T Consensus         6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~-~~~~G~vp~P~~   71 (72)
T 2cqq_A            6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV-TCSPGMVSGPSS   71 (72)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC-CCCSCCCSCSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc-CccCCCCCCCCC
Confidence            346789999999999999999999999999999998 999999999999999996 689999999987

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.68  E-value=6.3e-17  Score=122.61  Aligned_cols=64  Identities=41%  Similarity=0.651  Sum_probs=59.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcc
Q 021816          133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLSGGKDKRRASIHD  198 (307)
Q Consensus       133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~s~~k~~~r~s~hd  198 (307)
                      +..+||+|||++|++++++||. +|..||. +|++||+.||++||++|+++....+.+..+++||+
T Consensus         8 ~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~-~~~~Rt~~q~k~r~~~~l~~~~~~g~~~~~~si~s   71 (72)
T 2cu7_A            8 YSVKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT   71 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHSCSCTTCCCSCCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhcCCCCCcccccc
Confidence            3459999999999999999999 9999997 99999999999999999999977677888899986

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.63  E-value=3e-16  Score=120.00  Aligned_cols=52  Identities=23%  Similarity=0.419  Sum_probs=48.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816           25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~   76 (307)
                      ....||+||+++|++||+.|+.++|+||++||++|||||+.||++||..|..
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            3467999999999999999999999999999999999999999999999865

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.63  E-value=3.4e-16  Score=119.73  Aligned_cols=56  Identities=36%  Similarity=0.605  Sum_probs=52.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 021816           23 ESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADI   78 (307)
Q Consensus        23 ~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV   78 (307)
                      +.....||.|||++|++||++|+.++++||.+||++|||||..||++||..|++||
T Consensus        15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~   70 (73)
T 2cqr_A           15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGP   70 (73)
T ss_dssp             TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSC
T ss_pred             ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHcc
Confidence            34567899999999999999999999999999999999999999999999999875

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.62  E-value=2.5e-16  Score=130.85  Aligned_cols=73  Identities=22%  Similarity=0.434  Sum_probs=44.9

Q ss_pred             HHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchhhhccCCCCCCCCccccCCCCCCCCCcccccccCC
Q 021816           55 VAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWVNNHGYDGFKHPYAVGGKRSSSVRPAEHERKKG  134 (307)
Q Consensus        55 IAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~~~~~~~~dg~k~~~~~ggkr~~~~rs~~~erkKg  134 (307)
                      ||+.|||||..||++||..+++            |.+                                         +.
T Consensus         1 Ia~~~~~Rt~~qC~~Rw~~~l~------------p~~-----------------------------------------~k   27 (128)
T 1h8a_C            1 MEAVIKNRTDVQCQHRWQKVLN------------PEL-----------------------------------------NK   27 (128)
T ss_dssp             ---------------------C------------TTC-----------------------------------------CC
T ss_pred             CccccCCCCHHHHHHHHHHhhC------------CCC-----------------------------------------CC
Confidence            7999999999999999987655            322                                         22


Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF  181 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~  181 (307)
                      ++||+|||++|+.+|++||.++|..||. ++++||+.||+.||.+|+
T Consensus        28 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l   73 (128)
T 1h8a_C           28 GPWTKEEDQRVIEHVQKYGPKRWSDIAK-HLKGRIGKQCRERWHNHL   73 (128)
T ss_dssp             SCCCHHHHHHHHHHHHHTCSCCHHHHHH-HSSSCCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHH-HhcCCcHHHHHHHHHHhc
Confidence            4899999999999999999878999997 999999999999998764

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=99.59  E-value=1e-15  Score=144.90  Aligned_cols=132  Identities=23%  Similarity=0.317  Sum_probs=100.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhh----------hhhhhcCCCCCCCCC---
Q 021816           27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADI----------SNIEAGLIPLPGYGN---   93 (307)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV----------~~IEsG~v~~P~y~~---   93 (307)
                      +.||..|...|++|+++||.+   +|+.||+.|+|||+.||+++|+.+++..          ..||.|...+..+..   
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~---~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~  187 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRD---DIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKK  187 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTT---CHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHH---HHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999986   4999999999999999999999998876          568888655443221   


Q ss_pred             -----CCCcchhhhccC-CCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCC---Cchhcch---
Q 021816           94 -----SSPFTLEWVNNH-GYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGK---GDWRNIS---  161 (307)
Q Consensus        94 -----~s~f~l~~~~~~-~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~---G~W~~Ia---  161 (307)
                           .+.+..+|.... .|.                    .  .++..||+|||+.||.+|.+||.   |+|..|.   
T Consensus       188 ~l~~Ki~~~~~P~~~L~i~y~--------------------~--~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~I  245 (304)
T 1ofc_X          188 ALDQKMSRYRAPFHQLRLQYG--------------------N--NKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAI  245 (304)
T ss_dssp             HHHHHHHTCSSHHHHCCCCCT--------------------T--CCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHhcCcHHHhccccC--------------------C--CCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Confidence                 001111221110 000                    0  14568999999999999999999   9999996   


Q ss_pred             h--------cccCCCCHHHHHHHHHHHHHH
Q 021816          162 R--------NFVTSRTPTQVASHAQKYFIR  183 (307)
Q Consensus       162 ~--------~~v~tRT~~Qv~sh~qky~~r  183 (307)
                      +        +||.+||+.+|..|++-++.-
T Consensus       246 r~~p~FrFDwf~kSRTp~el~rRc~tLi~~  275 (304)
T 1ofc_X          246 RASPQFRFDWFIKSRTALELQRRCNTLITL  275 (304)
T ss_dssp             HHCGGGTTCHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence            2        699999999999999855443

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=99.58  E-value=1.7e-16  Score=121.04  Aligned_cols=49  Identities=43%  Similarity=0.761  Sum_probs=44.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 021816           24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYK   72 (307)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~   72 (307)
                      ..+..||.||+|+||+||++|++++|+||++||+.|||||+.||+++|.
T Consensus        18 ~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           18 GSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             ----CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            4467899999999999999999999999999999999999999999996

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=99.51  E-value=5.2e-15  Score=147.30  Aligned_cols=51  Identities=27%  Similarity=0.416  Sum_probs=46.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHHHh
Q 021816          133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQL  185 (307)
Q Consensus       133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~  185 (307)
                      ...+||+||+.+|++||.+||+ +|..||. +|+|||..||++||++|.+|++
T Consensus       379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~-~VgTKT~~Qvk~fy~~~kkr~~  429 (482)
T 2xag_B          379 CNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRFN  429 (482)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHTT-CHHHHHH-HHSSCCHHHHHHHHHHTTTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HhCCCCHHHHHHHHHHHHHHhC
Confidence            4669999999999999999999 9999997 8999999999999998877653

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.50  E-value=1.3e-14  Score=105.76  Aligned_cols=47  Identities=28%  Similarity=0.577  Sum_probs=44.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhcccC-CCCHHHHHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVT-SRTPTQVASHAQKYFI  182 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~-tRT~~Qv~sh~qky~~  182 (307)
                      .+||+|||++|+++|++||.++|..||+ +|+ +||+.||+.||++||.
T Consensus        10 ~~WT~eED~~L~~~v~~~G~~~W~~IA~-~~~~~Rt~~qcr~r~~~~~~   57 (58)
T 2elk_A           10 ENWGADEELLLIDACETLGLGNWADIAD-YVGNARTKEECRDHYLKTYI   57 (58)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCHHHHHH-HHCSSCCHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HHCCCCCHHHHHHHHHHHcc
Confidence            4799999999999999999779999997 999 9999999999999974

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.50  E-value=9.4e-15  Score=107.01  Aligned_cols=49  Identities=24%  Similarity=0.549  Sum_probs=45.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHH
Q 021816          134 GVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIR  183 (307)
Q Consensus       134 g~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r  183 (307)
                      ..+||+|||++|+++|++||.++|..||. +|++||+.||+.||++|+..
T Consensus         8 ~~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            8 DPSWTAQEEMALLEAVMDCGFGNWQDVAN-QMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CSSSCHHHHHHHHHHHHHTCTTCHHHHHH-HHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCcHHHHHH-HhCCCCHHHHHHHHHHHccC
Confidence            35899999999999999999779999997 99999999999999998754

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.49  E-value=2.7e-14  Score=101.21  Aligned_cols=46  Identities=28%  Similarity=0.538  Sum_probs=43.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF  181 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~  181 (307)
                      .+||+|||++|++++++||.++|..||. +|++||+.||+.||++|+
T Consensus         4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L   49 (52)
T 1guu_A            4 TRWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQKVL   49 (52)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHH-TSTTCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHH-HcCCCCHHHHHHHHHHHc
Confidence            5899999999999999999999999997 999999999999999886

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=2.5e-14  Score=108.78  Aligned_cols=50  Identities=40%  Similarity=0.509  Sum_probs=46.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-----CchhcchhcccCCCCHHHHHHHHHHHHHHHh
Q 021816          135 VPWTEEEHKLFLLGLKKHGK-----GDWRNISRNFVTSRTPTQVASHAQKYFIRQL  185 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~-----G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~  185 (307)
                      .+||+|||++|+++|++||.     ++|..||. +|++||+.||++||++|+.++.
T Consensus         9 ~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~-~~~~Rt~~qcr~r~~~~l~~~~   63 (75)
T 2yum_A            9 QLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD-ELGNRTAKQVASQVQKYFIKLT   63 (75)
T ss_dssp             SCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHH-HHSSSCHHHHHHHHHHHHGGGS
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH-HhCCCCHHHHHHHHHHHHHHHH
Confidence            48999999999999999995     59999997 9999999999999999998765

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.45  E-value=5.6e-14  Score=99.71  Aligned_cols=46  Identities=24%  Similarity=0.449  Sum_probs=43.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF  181 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~  181 (307)
                      ++||+|||++|++++++||.++|..||. +|++||+.||+.||++|+
T Consensus         4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L   49 (52)
T 1gvd_A            4 GPWTKEEDQRLIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL   49 (52)
T ss_dssp             CSCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcChHHHHHH-HcCCCCHHHHHHHHHHHc
Confidence            4899999999999999999878999997 999999999999999874

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=7.4e-14  Score=104.93  Aligned_cols=50  Identities=20%  Similarity=0.509  Sum_probs=45.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816           24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~   76 (307)
                      ...+.||+|||++|..+|..|+..   +|..||..|||||..||++||..++.
T Consensus         7 ~k~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~L~   56 (70)
T 2dim_A            7 GKGGVWRNTEDEILKAAVMKYGKN---QWSRIASLLHRKSAKQCKARWYEWLD   56 (70)
T ss_dssp             STTCCCCHHHHHHHHHHHHHTCSS---CHHHHHHHSTTCCHHHHHHHHHHTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence            356789999999999999999954   59999999999999999999998665

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.43  E-value=8.3e-14  Score=107.82  Aligned_cols=46  Identities=35%  Similarity=0.551  Sum_probs=42.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHH
Q 021816          133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKY  180 (307)
Q Consensus       133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky  180 (307)
                      ...+||+|||++||++|++|| ++|.+||+ +|++||+.||+.||++|
T Consensus        17 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~-~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           17 AGREWTEQETLLLLEALEMYK-DDWNKVSE-HVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CSCCCCHHHHHHHHHHHHHSS-SCHHHHHH-HHSSCCHHHHHHHHTTS
T ss_pred             cCCCcCHHHHHHHHHHHHHhC-CCHHHHHH-HcCCCCHHHHHHHHHHh
Confidence            456899999999999999999 59999997 99999999999999866

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.43  E-value=1.3e-13  Score=98.38  Aligned_cols=47  Identities=26%  Similarity=0.408  Sum_probs=43.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhcccC--CCCHHHHHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVT--SRTPTQVASHAQKYFI  182 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~--tRT~~Qv~sh~qky~~  182 (307)
                      .+||+|||++|+.+|++||.++|..||. +++  +||+.||+.+|.+|.+
T Consensus         3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            3 QAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HcCCCCCCHHHHHHHHHHHHc
Confidence            5899999999999999999889999997 899  9999999999998753

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.42  E-value=2.2e-13  Score=102.13  Aligned_cols=53  Identities=25%  Similarity=0.385  Sum_probs=47.6

Q ss_pred             ccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccC--CCCHHHHHHHHHHHHHHH
Q 021816          131 RKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVT--SRTPTQVASHAQKYFIRQ  184 (307)
Q Consensus       131 rkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~--tRT~~Qv~sh~qky~~r~  184 (307)
                      +++..+||+|||++|+.+|++||.++|..||. +++  +||+.||+.||..|+...
T Consensus         7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~l~p~   61 (69)
T 1ity_A            7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKKLK   61 (69)
T ss_dssp             SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHH-HSCCSSCCHHHHHHHHHHHHHTS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHH-HcCcCCCCHHHHHHHHHHHcCCC
Confidence            34556999999999999999999889999997 999  999999999999887654

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.41  E-value=1.4e-13  Score=100.44  Aligned_cols=49  Identities=22%  Similarity=0.407  Sum_probs=44.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHH
Q 021816          133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFI  182 (307)
Q Consensus       133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~  182 (307)
                      +..+||+|||++|++++++||.++|..||. +|++||+.||+.||++|+.
T Consensus         7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~   55 (60)
T 2d9a_A            7 GKVKWTHEEDEQLRALVRQFGQQDWKFLAS-HFPNRTDQQCQYRWLRVLS   55 (60)
T ss_dssp             CCSCCCHHHHHHHHHHHHHTCTTCHHHHHH-HCSSSCHHHHHHHHHHTSC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HccCCCHHHHHHHHHHHcC
Confidence            345899999999999999999779999997 9999999999999998753

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=6.2e-13  Score=101.01  Aligned_cols=65  Identities=32%  Similarity=0.541  Sum_probs=52.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCC--ChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCC
Q 021816           24 SKSTRWTAAENKMFENALAVYDKDS--PDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGY   91 (307)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~t--pdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y   91 (307)
                      .....||+|||++|+++|+.|+.++  +.+|.+||++|||||..||++||..++..+  +..| .++|++
T Consensus         6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~--~k~g-~~~pg~   72 (75)
T 2yum_A            6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKL--TKAG-IPVSGP   72 (75)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGG--STTC-SCCCCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHH--HhcC-CCCCCC
Confidence            4567899999999999999999765  378999999999999999999997776532  3333 345554

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.39  E-value=4e-13  Score=99.97  Aligned_cols=49  Identities=29%  Similarity=0.464  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccC--CCCHHHHHHHHHHHHH
Q 021816          133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVT--SRTPTQVASHAQKYFI  182 (307)
Q Consensus       133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~--tRT~~Qv~sh~qky~~  182 (307)
                      +..+||+|||++|+++|++||.++|..||. +++  +||+.||+.+|+.+.+
T Consensus        10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~nl~k   60 (64)
T 3sjm_A           10 KKQKWTVEESEWVKAGVQKYGEGNWAAISK-NYPFVNRTAVMIKDRWRTMKR   60 (64)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHccCCCchHHHHh-hcCCCCCCHHHHHHHHHHHhc
Confidence            345899999999999999999889999997 655  9999999999987753

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.35  E-value=5e-12  Score=115.77  Aligned_cols=135  Identities=10%  Similarity=0.203  Sum_probs=91.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCC--CChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCcchhhh
Q 021816           25 KSTRWTAAENKMFENALAVYDKD--SPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPFTLEWV  102 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~--tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f~l~~~  102 (307)
                      ....||+|||++|.+++.+||..  ++..|..||..|||||..+|++||..++..  .++-. ...+....   ...   
T Consensus         7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~--~ln~v-y~~ded~~---Li~---   77 (246)
T 1ign_A            7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK--RLEYV-YEVDKFGK---LVR---   77 (246)
T ss_dssp             -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG--GCCCE-ECBCTTSC---BCB---
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh--hcccc-cccCcchh---hhh---
Confidence            45689999999999999999863  234499999999999999999999987763  12210 11111100   000   


Q ss_pred             ccCCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHH-h-----------------------------
Q 021816          103 NNHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKK-H-----------------------------  152 (307)
Q Consensus       103 ~~~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~k-y-----------------------------  152 (307)
                                  +..|. +....-..+ ..| ..||.|||-+|+..+++ |                             
T Consensus        78 ------------d~~Gn-~ikis~lp~-siK-~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~  142 (246)
T 1ign_A           78 ------------DDDGN-LIKTKVLPP-SIK-RKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRN  142 (246)
T ss_dssp             ------------CTTSC-BCEESSCCC-CSC-CCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------
T ss_pred             ------------ccCCC-ceeeeccCc-ccc-CccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhh
Confidence                        00011 111111111 112 37999999999999988 2                             


Q ss_pred             ---C------------------------CCchhcchhcccCCCCHHHHHHHHHHHHHHH
Q 021816          153 ---G------------------------KGDWRNISRNFVTSRTPTQVASHAQKYFIRQ  184 (307)
Q Consensus       153 ---G------------------------~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~  184 (307)
                         |                        .+.|..||+ ++|+||...+|++|.|+.+..
T Consensus       143 ~~~~~~~~~~~~~~f~~~~~~~~~gp~~~~~fk~ia~-~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          143 MTMDPNHVPGSEPNFAAYRTQSRRGPIAREFFKHFAE-EHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             ------------------CCCCCCCCCCTTHHHHHHH-HTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccCccccccCCcchhhhccccccCcchHHHHHHHHH-HCCCCChhhHHHHHHHHHhhc
Confidence               1                        136999997 999999999999999887665

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=8.1e-13  Score=99.20  Aligned_cols=48  Identities=21%  Similarity=0.503  Sum_probs=44.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816          133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF  181 (307)
Q Consensus       133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~  181 (307)
                      +..+||+|||++|+.+|++||.++|..||. +|++||+.||+.||++|+
T Consensus         8 k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~L   55 (70)
T 2dim_A            8 KGGVWRNTEDEILKAAVMKYGKNQWSRIAS-LLHRKSAKQCKARWYEWL   55 (70)
T ss_dssp             TTCCCCHHHHHHHHHHHHHTCSSCHHHHHH-HSTTCCHHHHHHHHHHTS
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HhcCCCHHHHHHHHHHHc
Confidence            445899999999999999999779999997 999999999999998774

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.33  E-value=6.6e-13  Score=102.74  Aligned_cols=57  Identities=26%  Similarity=0.443  Sum_probs=48.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHH-HHhhhhhhhc
Q 021816           24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKEL-EADISNIEAG   84 (307)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L-~~dV~~IEsG   84 (307)
                      .....||+|||++|++||.+|+ +   +|.+||.+|++||..||+.||..+ ++|+..+|++
T Consensus        16 ~~~~~WT~eEd~~Ll~~v~~~G-~---~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~~~   73 (79)
T 2yus_A           16 SAGREWTEQETLLLLEALEMYK-D---DWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSD   73 (79)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHSS-S---CHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCCCC
T ss_pred             ccCCCcCHHHHHHHHHHHHHhC-C---CHHHHHHHcCCCCHHHHHHHHHHhcccccccccCC
Confidence            4567899999999999999999 3   599999999999999999999987 6655444443

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.31  E-value=1.6e-12  Score=99.24  Aligned_cols=48  Identities=27%  Similarity=0.549  Sum_probs=43.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCC---chhcchhcccCCCCHHHHHHHHHHHH
Q 021816          133 KGVPWTEEEHKLFLLGLKKHGKG---DWRNISRNFVTSRTPTQVASHAQKYF  181 (307)
Q Consensus       133 Kg~pWT~EEd~llL~~l~kyG~G---~W~~Ia~~~v~tRT~~Qv~sh~qky~  181 (307)
                      ...+||.|||++|+.+|.+||.+   +|.+||. +||+||..||++||+.+.
T Consensus        17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~-~vpGRT~~qcr~Ry~~L~   67 (73)
T 2cqr_A           17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR-CVPSKSKEDCIARYKLLV   67 (73)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGG-GCSSSCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHHHH
Confidence            44689999999999999999943   8999997 999999999999998653

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.29  E-value=4.7e-12  Score=92.56  Aligned_cols=50  Identities=28%  Similarity=0.346  Sum_probs=45.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816           24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~   76 (307)
                      .....||+|||++|.+||..|+.+   +|.+||+.|||||..||++||..++.
T Consensus         6 ~~~~~WT~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            6 SGDPSWTAQEEMALLEAVMDCGFG---NWQDVANQMCTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHTCTT---CHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcC---cHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence            356789999999999999999964   49999999999999999999998764

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=3.7e-12  Score=93.62  Aligned_cols=50  Identities=16%  Similarity=0.291  Sum_probs=44.8

Q ss_pred             ccccccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHH
Q 021816          127 AEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQ  178 (307)
Q Consensus       127 ~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~q  178 (307)
                      .+.+|+...+||+|||++|++++.+||+ +|..||. +|++||..||..||.
T Consensus         5 ~~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~-~l~~rt~~~~v~~Yy   54 (61)
T 2eqr_A            5 SSGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIAS-YLERKSVPDCVLYYY   54 (61)
T ss_dssp             CCCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHH-HCTTSCHHHHHHHHH
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHH
Confidence            3456677789999999999999999998 9999996 999999999999853

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.28  E-value=6.4e-12  Score=88.92  Aligned_cols=49  Identities=22%  Similarity=0.520  Sum_probs=44.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816           25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~   76 (307)
                      ..+.||+|||++|.++|..|+.+   +|..||..|||||..||++||..+++
T Consensus         2 ~~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1guu_A            2 GKTRWTREEDEKLKKLVEQNGTD---DWKVIANYLPNRTDVQCQHRWQKVLN   50 (52)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCSS---CHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            35789999999999999999964   49999999999999999999998875

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=5.8e-12  Score=93.49  Aligned_cols=59  Identities=20%  Similarity=0.446  Sum_probs=52.0

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhc
Q 021816           21 LEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAG   84 (307)
Q Consensus        21 ~~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG   84 (307)
                      ........||+|||++|.+++..|+.    +|.+||. +||||..||++||..++.....+|+|
T Consensus         4 ~P~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~   62 (66)
T 2din_A            4 GSSGKKTEWSREEEEKLLHLAKLMPT----QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG   62 (66)
T ss_dssp             SSSSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence            34556789999999999999999986    4999999 88999999999999999987777765

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.94  E-value=3.5e-13  Score=106.22  Aligned_cols=51  Identities=37%  Similarity=0.488  Sum_probs=47.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHHHh
Q 021816          133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQL  185 (307)
Q Consensus       133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~  185 (307)
                      +.++||+|||++|++++.+||. +|..||. +|++||+.||++||+.|++++.
T Consensus        15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~-~l~gRt~~q~k~r~~~~lrk~~   65 (89)
T 2ltp_A           15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIAR-MVGSKTVSQCKNFYFNYKKRQN   65 (89)
Confidence            3458999999999999999999 9999997 9999999999999999988764

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.26  E-value=7.4e-12  Score=97.81  Aligned_cols=50  Identities=16%  Similarity=0.329  Sum_probs=45.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhcchhc---ccCCCCHHHHHHHHHHHHHHHh
Q 021816          136 PWTEEEHKLFLLGLKKHGKGDWRNISRN---FVTSRTPTQVASHAQKYFIRQL  185 (307)
Q Consensus       136 pWT~EEd~llL~~l~kyG~G~W~~Ia~~---~v~tRT~~Qv~sh~qky~~r~~  185 (307)
                      +||+|||+.|+++|++||.|+|+.|++.   ++++||+.||+++|.+++++..
T Consensus         2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            7999999999999999999999999974   3799999999999999887654

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=6.3e-12  Score=93.29  Aligned_cols=50  Identities=24%  Similarity=0.382  Sum_probs=45.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHHHhc
Q 021816          134 GVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLS  186 (307)
Q Consensus       134 g~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~s  186 (307)
                      ..+||+|||++|+.++++||. +|..||.  +++||+.||++||+.|+.....
T Consensus         9 k~~WT~eED~~L~~~~~~~g~-~W~~Ia~--~~gRt~~qcr~Rw~~~l~~~~~   58 (66)
T 2din_A            9 KTEWSREEEEKLLHLAKLMPT-QWRTIAP--IIGRTAAQCLEHYEFLLDKAAQ   58 (66)
T ss_dssp             CCCCCHHHHHHHHHHHHHCTT-CHHHHHH--HHSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC-CHHHHhc--ccCcCHHHHHHHHHHHhChHhc
Confidence            358999999999999999999 9999996  6689999999999999888754

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.25  E-value=9.4e-12  Score=88.13  Aligned_cols=49  Identities=16%  Similarity=0.365  Sum_probs=44.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816           25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~   76 (307)
                      ..+.||+|||++|.++|..|+..   +|..||..|||||..||++||..+++
T Consensus         2 ~k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1gvd_A            2 IKGPWTKEEDQRLIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcC---hHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            35789999999999999999964   49999999999999999999998764

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.24  E-value=1.4e-11  Score=89.67  Aligned_cols=50  Identities=16%  Similarity=0.407  Sum_probs=45.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816           24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~   76 (307)
                      .....||+|||++|.++|..|+..   +|..||.+|||||..||++||..++.
T Consensus         6 ~~k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~l~   55 (60)
T 2d9a_A            6 SGKVKWTHEEDEQLRALVRQFGQQ---DWKFLASHFPNRTDQQCQYRWLRVLS   55 (60)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHTCTT---CHHHHHHHCSSSCHHHHHHHHHHTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHccCCCHHHHHHHHHHHcC
Confidence            456789999999999999999954   49999999999999999999998765

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.24  E-value=1.1e-11  Score=100.76  Aligned_cols=55  Identities=18%  Similarity=0.349  Sum_probs=48.0

Q ss_pred             cccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcc---cCCCCHHHHHHHHHHHHHHH
Q 021816          130 ERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNF---VTSRTPTQVASHAQKYFIRQ  184 (307)
Q Consensus       130 erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~---v~tRT~~Qv~sh~qky~~r~  184 (307)
                      .+++..+||+|||+.|+++|++||.|+|..|++.+   +++||+.+|+.+|.++++..
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            34566799999999999999999999999999743   38999999999999887654

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.23  E-value=1.3e-11  Score=89.83  Aligned_cols=46  Identities=17%  Similarity=0.382  Sum_probs=42.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCC-CCCHHHHHHHHHHH
Q 021816           26 STRWTAAENKMFENALAVYDKDSPDRWQKVAAMIP-GKTVVDVIKQYKEL   74 (307)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vP-GRT~~qc~~rY~~L   74 (307)
                      ...||+|||++|.++|.+|+.+   +|..||++|| |||..||++||..+
T Consensus         9 ~~~WT~eED~~L~~~v~~~G~~---~W~~IA~~~~~~Rt~~qcr~r~~~~   55 (58)
T 2elk_A            9 DENWGADEELLLIDACETLGLG---NWADIADYVGNARTKEECRDHYLKT   55 (58)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTTT---CHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHHCCCCCHHHHHHHHHHH
Confidence            5679999999999999999964   4999999999 99999999999875

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.23  E-value=2.7e-11  Score=90.02  Aligned_cols=50  Identities=18%  Similarity=0.542  Sum_probs=44.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCC--CCCHHHHHHHHHHHHH
Q 021816           24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIP--GKTVVDVIKQYKELEA   76 (307)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vP--GRT~~qc~~rY~~L~~   76 (307)
                      .....||+|||++|.++|.+|+.+   +|..||+.+|  |||..||++||..++.
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k   60 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEG---NWAAISKNYPFVNRTAVMIKDRWRTMKR   60 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCC---chHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence            456789999999999999999965   4999999977  9999999999998876

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.19  E-value=3.2e-11  Score=100.33  Aligned_cols=56  Identities=16%  Similarity=0.323  Sum_probs=49.1

Q ss_pred             cccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcc---cCCCCHHHHHHHHHHHHHHHh
Q 021816          130 ERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNF---VTSRTPTQVASHAQKYFIRQL  185 (307)
Q Consensus       130 erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~---v~tRT~~Qv~sh~qky~~r~~  185 (307)
                      .+++..+||+|||+.|+++|++||.|+|..|++.+   +++||+.||+++|..+++...
T Consensus        13 ~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~   71 (121)
T 2juh_A           13 QRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   71 (121)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence            34566799999999999999999999999999843   489999999999999887654

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.18  E-value=4.9e-11  Score=84.91  Aligned_cols=48  Identities=17%  Similarity=0.423  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCC--CCCHHHHHHHHHHHHH
Q 021816           26 STRWTAAENKMFENALAVYDKDSPDRWQKVAAMIP--GKTVVDVIKQYKELEA   76 (307)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vP--GRT~~qc~~rY~~L~~   76 (307)
                      .+.||+|||.+|..+|+.||.+   +|..||..||  |||..||++||..++.
T Consensus         2 r~~WT~eEd~~L~~~v~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            2 RQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            5789999999999999999964   4999999999  9999999999998763

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.18  E-value=4.8e-11  Score=99.43  Aligned_cols=56  Identities=21%  Similarity=0.369  Sum_probs=49.1

Q ss_pred             cccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcc---cCCCCHHHHHHHHHHHHHHHh
Q 021816          130 ERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNF---VTSRTPTQVASHAQKYFIRQL  185 (307)
Q Consensus       130 erkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~---v~tRT~~Qv~sh~qky~~r~~  185 (307)
                      .+++..+||+|||+.|+++|++||.|+|..|++.+   +++||..||+.+|.++++...
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~   85 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS   85 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            34566799999999999999999999999999743   389999999999999887654

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.16  E-value=5.5e-11  Score=89.78  Aligned_cols=51  Identities=29%  Similarity=0.619  Sum_probs=46.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 021816           23 ESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEAD   77 (307)
Q Consensus        23 ~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~d   77 (307)
                      ......||+|||++|.+++..||.    +|..||.+|||||..||+.||..++..
T Consensus         6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~~Rt~~q~k~r~~~~l~~   56 (72)
T 2cu7_A            6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLIGSRTVLQVKSYARQYFKN   56 (72)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            345789999999999999999997    499999999999999999999988764

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.16  E-value=2.3e-11  Score=92.90  Aligned_cols=43  Identities=26%  Similarity=0.353  Sum_probs=39.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHH
Q 021816          133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQ  178 (307)
Q Consensus       133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~q  178 (307)
                      +.++||+|||++|++++++||. +|..||+ ++ +||+.||++||+
T Consensus        22 ~k~~wT~EED~~L~~l~~~~G~-kW~~IA~-~l-gRt~~q~knRw~   64 (73)
T 2llk_A           22 HVGKYTPEEIEKLKELRIKHGN-DWATIGA-AL-GRSASSVKDRCR   64 (73)
T ss_dssp             CCCSSCHHHHHHHHHHHHHHSS-CHHHHHH-HH-TSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCC-CHHHHHH-Hh-CCCHHHHHHHHH
Confidence            3359999999999999999999 7999997 78 999999999987

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.16  E-value=7.2e-11  Score=98.25  Aligned_cols=88  Identities=18%  Similarity=0.282  Sum_probs=71.1

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhC----CCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCC
Q 021816           21 LEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMI----PGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSP   96 (307)
Q Consensus        21 ~~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~v----PGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~   96 (307)
                      ........||.|||..|..+|.+||.+   +|..||..+    +|||..||++||..++.-. .++      |.      
T Consensus        12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G---~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~-~~~------p~------   75 (121)
T 2juh_A           12 SQRRIRRPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA-SIA------PQ------   75 (121)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHHGGG---CHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH-HTC------ST------
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhccccCCCCHHHHHHHHHHHHhhh-ccC------Cc------
Confidence            345667899999999999999999975   599999984    8999999999999987621 000      10      


Q ss_pred             cchhhhccCCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCCCchhc
Q 021816           97 FTLEWVNNHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGKGDWRN  159 (307)
Q Consensus        97 f~l~~~~~~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~G~W~~  159 (307)
                                                        .+++.+|++||+.+++.+...+|. +|.+
T Consensus        76 ----------------------------------~krg~~~p~e~~~rv~~~h~~~gn-~~~~  103 (121)
T 2juh_A           76 ----------------------------------QRRGEPVPQDLLDRVLAAHAYWSQ-QQGK  103 (121)
T ss_dssp             ----------------------------------TCCCSCCCHHHHHHHHHHHHHHHH-HHCC
T ss_pred             ----------------------------------ccCCCCCCHHHHHHHHHHHHHHcc-chhc
Confidence                                              123459999999999999999998 7776

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.15  E-value=2.7e-11  Score=96.94  Aligned_cols=46  Identities=24%  Similarity=0.435  Sum_probs=43.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF  181 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~  181 (307)
                      ++||+|||++|+.+|++||.++|..||. ++++||+.||+.||++|+
T Consensus         5 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l   50 (105)
T 1gv2_A            5 GPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL   50 (105)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHhCCCcHHHHhh-hhcCCCHHHHHHHHHhcc
Confidence            4899999999999999999889999997 999999999999998763

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=99.11  E-value=1e-10  Score=113.25  Aligned_cols=135  Identities=21%  Similarity=0.271  Sum_probs=95.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCC-CCCHHHHHHHHHHHHHh----------hhhhhhcCCCCCCCCC--
Q 021816           27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAMIP-GKTVVDVIKQYKELEAD----------ISNIEAGLIPLPGYGN--   93 (307)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vP-GRT~~qc~~rY~~L~~d----------V~~IEsG~v~~P~y~~--   93 (307)
                      +.||+-|-..|.+|+++||.+.   ...||+.|. |||..||.++++.++..          +..||.|...+-....  
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d---~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~  200 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNS---IQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQ  200 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTC---HHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhH---HHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999864   999999998 99999999888887764          3345554322111000  


Q ss_pred             ------CCCcchhhhccC-CCCCCCCccccCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHhCC---Cchhcch--
Q 021816           94 ------SSPFTLEWVNNH-GYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEEHKLFLLGLKKHGK---GDWRNIS--  161 (307)
Q Consensus        94 ------~s~f~l~~~~~~-~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EEd~llL~~l~kyG~---G~W~~Ia--  161 (307)
                            .+.+..+|.... .|.+       .           +  .++..||+|||+.||.+|.+||.   |.|..|-  
T Consensus       201 ~~L~~Ki~~y~~P~~~L~i~y~~-------~-----------~--~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~  260 (374)
T 2y9y_A          201 EALRRKLSEYKNPFFDLKLKHPP-------S-----------S--NNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDE  260 (374)
T ss_dssp             HHHHHHHTTCSSHHHHCCCSSCC-------C-----------C--SSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHH
T ss_pred             HHHHHHHHHccCCHHHceeccCC-------C-----------C--CCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence                  011112232211 1111       0           0  13457999999999999999999   9999994  


Q ss_pred             ---------hcccCCCCHHHHHHHHHHHHHHH
Q 021816          162 ---------RNFVTSRTPTQVASHAQKYFIRQ  184 (307)
Q Consensus       162 ---------~~~v~tRT~~Qv~sh~qky~~r~  184 (307)
                               .+|+.+||+.+|..|+.-++.-.
T Consensus       261 Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~I  292 (374)
T 2y9y_A          261 IRDCPLFELDFYFRSRTPVELARRGNTLLQCL  292 (374)
T ss_dssp             HHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             HHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence                     56799999999999998554443

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=1.3e-10  Score=85.32  Aligned_cols=49  Identities=20%  Similarity=0.363  Sum_probs=43.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 021816           22 EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKEL   74 (307)
Q Consensus        22 ~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L   74 (307)
                      +......||+||+++|++++++||.+    |.+||++||+||+.||+++|...
T Consensus         8 ~r~~~~~WT~eE~~~F~~~~~~~gk~----w~~Ia~~l~~rt~~~~v~~Yy~~   56 (61)
T 2eqr_A            8 DRQFMNVWTDHEKEIFKDKFIQHPKN----FGLIASYLERKSVPDCVLYYYLT   56 (61)
T ss_dssp             CCSCCCSCCHHHHHHHHHHHHHSTTC----HHHHHHHCTTSCHHHHHHHHHHH
T ss_pred             ccccCCCCCHHHHHHHHHHHHHhCCC----HHHHHHHcCCCCHHHHHHHHHHh
Confidence            34456789999999999999999964    99999999999999999999754

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=99.11  E-value=3.1e-11  Score=109.70  Aligned_cols=51  Identities=27%  Similarity=0.416  Sum_probs=46.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHHHh
Q 021816          133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQL  185 (307)
Q Consensus       133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~  185 (307)
                      ...+||+||+++|++||.+||+ +|..||+ +|+|||..||++||++|.+|++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGK-DW~~IAk-~VgTKT~~QcKnfY~~~kKRln  182 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRFN  182 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSS-CHHHHHH-HHSSCCHHHHHHHHHHTTTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHhh
Confidence            4568999999999999999999 9999997 9999999999999998877643

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.10  E-value=2.1e-10  Score=85.83  Aligned_cols=50  Identities=18%  Similarity=0.426  Sum_probs=46.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCC--CCCHHHHHHHHHHHHH
Q 021816           24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIP--GKTVVDVIKQYKELEA   76 (307)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vP--GRT~~qc~~rY~~L~~   76 (307)
                      .....||+|||.+|..+|..||.+   +|..||..||  |||..||++||..++.
T Consensus         8 ~~r~~WT~eED~~L~~~v~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~   59 (69)
T 1ity_A            8 RKRQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTMKK   59 (69)
T ss_dssp             SSCCCCCHHHHHHHHHHHHHHCSS---CHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCC---cHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence            456889999999999999999964   4999999999  9999999999999887

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.09  E-value=9.7e-11  Score=93.30  Aligned_cols=49  Identities=33%  Similarity=0.548  Sum_probs=44.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---chhcchhcccCCCCHHHHHHHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGKG---DWRNISRNFVTSRTPTQVASHAQKYFIRQ  184 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G---~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~  184 (307)
                      .+||.|||++|+.+|.+||.+   +|.+||. +||+||..||++||+.+....
T Consensus         9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~-~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            9 RPWSAKENKAFERALAVYDKDTPDRWANVAR-AVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHHHHHHH
Confidence            489999999999999999843   7999997 999999999999999887654

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.07  E-value=9e-11  Score=94.62  Aligned_cols=46  Identities=30%  Similarity=0.490  Sum_probs=43.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF  181 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~  181 (307)
                      ++||+|||++|+.+|++||.++|..||. +|++||+.||+.||.+|+
T Consensus         2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L   47 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYI   47 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHHCSSCHHHHHH-HTTTSCHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHhh-hcCCCCHHHHHHHHHHHH
Confidence            3799999999999999999889999997 999999999999998774

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.06  E-value=1.3e-10  Score=96.75  Aligned_cols=46  Identities=28%  Similarity=0.501  Sum_probs=43.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF  181 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~  181 (307)
                      ++||+|||++|+.+|++||.++|..||. +|++||+.||+.||++|+
T Consensus         3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~l   48 (131)
T 3zqc_A            3 GPFTEAEDDLIREYVKENGPQNWPRITS-FLPNRSPKQCRERWFNHL   48 (131)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSCCGGGGTT-SCTTSCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhCcCCHHHHHH-HHCCCCHHHHHHHHhhcc
Confidence            3899999999999999999889999997 999999999999998875

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.05  E-value=1.5e-10  Score=95.89  Aligned_cols=47  Identities=26%  Similarity=0.503  Sum_probs=43.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816          133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF  181 (307)
Q Consensus       133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~  181 (307)
                      +.++||+|||++|+.+|++||. +|..||. ++++||+.||+.||.+|+
T Consensus        10 kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~-~~~~Rt~~qcr~Rw~~~l   56 (126)
T 3osg_A           10 KKQKFTPEEDEMLKRAVAQHGS-DWKMIAA-TFPNRNARQCRDRWKNYL   56 (126)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHTT-CHHHHHH-TCTTCCHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHhhhc
Confidence            4458999999999999999998 9999997 999999999999999875

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.05  E-value=1.4e-10  Score=85.87  Aligned_cols=49  Identities=22%  Similarity=0.417  Sum_probs=42.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCchhcchh--cccCCCCHHHHHHHHHHHHH
Q 021816          133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISR--NFVTSRTPTQVASHAQKYFI  182 (307)
Q Consensus       133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~--~~v~tRT~~Qv~sh~qky~~  182 (307)
                      +..+||+||++.|++||++||. +|..|+.  .|+++||.+.++++|..+.+
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            3458999999999999999999 9999993  28899999999999886543

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.04  E-value=1.1e-09  Score=91.16  Aligned_cols=83  Identities=17%  Similarity=0.198  Sum_probs=66.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhC----CCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCc
Q 021816           22 EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMI----PGKTVVDVIKQYKELEADISNIEAGLIPLPGYGNSSPF   97 (307)
Q Consensus        22 ~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~v----PGRT~~qc~~rY~~L~~dV~~IEsG~v~~P~y~~~s~f   97 (307)
                      .......||.|||+.|..+|.+||.+   +|..|+...    +|||..||++||..++.--           .+..    
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~-----------~~~p----   88 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTG---RWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA-----------SIAP----   88 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSS---CHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH-----------HSCT----
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHhhc-----------cCCc----
Confidence            34567899999999999999999976   599999974    8999999999999987510           0100    


Q ss_pred             chhhhccCCCCCCCCccccCCCCCCCCCcccccccCCCCCCHHH-HHHHHHHHHHhCCC
Q 021816           98 TLEWVNNHGYDGFKHPYAVGGKRSSSVRPAEHERKKGVPWTEEE-HKLFLLGLKKHGKG  155 (307)
Q Consensus        98 ~l~~~~~~~~dg~k~~~~~ggkr~~~~rs~~~erkKg~pWT~EE-d~llL~~l~kyG~G  155 (307)
                                                      . .+.+.|+++| +.+++.+...||..
T Consensus        89 --------------------------------~-~kr~~~~p~e~~~~v~~~h~~~g~~  114 (122)
T 2roh_A           89 --------------------------------Q-QRRGAPVPQELLDRVLAAQAYWSVD  114 (122)
T ss_dssp             --------------------------------T-TCCCSSCCHHHHHHHHHHHHHHHSS
T ss_pred             --------------------------------c-ccCCCCCCHHHHHHHHHHHHHHhhH
Confidence                                            0 1224899999 78999999999973

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.01  E-value=3e-10  Score=86.69  Aligned_cols=53  Identities=13%  Similarity=0.322  Sum_probs=45.8

Q ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816           19 WLLEESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        19 w~~~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~   76 (307)
                      .|......+.||+|||++|.++++.||..    |..||..| |||..||++||..|..
T Consensus        16 ~ldP~i~k~~wT~EED~~L~~l~~~~G~k----W~~IA~~l-gRt~~q~knRw~~L~~   68 (73)
T 2llk_A           16 FQGDRNHVGKYTPEEIEKLKELRIKHGND----WATIGAAL-GRSASSVKDRCRLMKD   68 (73)
T ss_dssp             ---CCCCCCSSCHHHHHHHHHHHHHHSSC----HHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred             ecCCCCCCCCCCHHHHHHHHHHHHHHCCC----HHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            44456778999999999999999999964    99999999 9999999999997754

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=1.3e-09  Score=80.60  Aligned_cols=44  Identities=25%  Similarity=0.498  Sum_probs=40.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHH
Q 021816          133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHA  177 (307)
Q Consensus       133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~  177 (307)
                      +..+||+||+++|+++|.+||+ +|..|++++|++||..||..+|
T Consensus         8 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fY   51 (63)
T 2yqk_A            8 IEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITFY   51 (63)
T ss_dssp             CCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHHH
Confidence            4468999999999999999999 9999997579999999999875

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.92  E-value=4.9e-10  Score=85.58  Aligned_cols=45  Identities=22%  Similarity=0.400  Sum_probs=41.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CchhcchhcccCCCCHHHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGK---GDWRNISRNFVTSRTPTQVASHAQKY  180 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~---G~W~~Ia~~~v~tRT~~Qv~sh~qky  180 (307)
                      ..||+||+++|+.+|..|++   ++|.+||. +|++||..+|+.||+.+
T Consensus         9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~-~V~gKT~eE~~~hY~~l   56 (73)
T 1wgx_A            9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAA-AVGSRSPEECQRKYMEN   56 (73)
T ss_dssp             SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHH-HTTTSCHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCccHHHHHHH-HcCCCCHHHHHHHHHHH
Confidence            47999999999999999997   47999997 99999999999998754

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.90  E-value=1.1e-09  Score=83.24  Aligned_cols=45  Identities=27%  Similarity=0.496  Sum_probs=40.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC---chhcchhcccCCCCHHHHHHHHHHH
Q 021816          134 GVPWTEEEHKLFLLGLKKHGKG---DWRNISRNFVTSRTPTQVASHAQKY  180 (307)
Q Consensus       134 g~pWT~EEd~llL~~l~kyG~G---~W~~Ia~~~v~tRT~~Qv~sh~qky  180 (307)
                      ..+||.||+++|..+|.+|+.|   +|.+||. ++ +||..||++||+++
T Consensus         8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~-~l-gRt~~eV~~~y~~L   55 (72)
T 2cqq_A            8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAH-EL-GRSVTDVTTKAKQL   55 (72)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HH-TSCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-Hh-CCCHHHHHHHHHHH
Confidence            3589999999999999999954   7999997 77 89999999999876

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=98.88  E-value=2.7e-08  Score=88.21  Aligned_cols=52  Identities=13%  Similarity=0.174  Sum_probs=42.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhh--CCCCCHHHHHHHHHHHHHh
Q 021816           25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAM--IPGKTVVDVIKQYKELEAD   77 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~--vPGRT~~qc~~rY~~L~~d   77 (307)
                      .-..||+.|-..|.+|+.+||.. .+||+.|++.  |.+||..+|.+.|..+..-
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~-~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~   59 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGP-LERLDAIARDAELVDKSETDLRRLGELVHNG   59 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSG-GGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCc-hhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            34679999999999999999942 3689999964  7899999999988877654

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.82  E-value=7e-09  Score=78.28  Aligned_cols=45  Identities=27%  Similarity=0.414  Sum_probs=40.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHH
Q 021816          133 KGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQ  178 (307)
Q Consensus       133 Kg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~q  178 (307)
                      ...+||+||.++|+++|.+||+ +|..|++++|++||..||..+|-
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY   51 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYY   51 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHHH
Confidence            3458999999999999999999 99999975799999999999863

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.80  E-value=9e-09  Score=76.08  Aligned_cols=47  Identities=26%  Similarity=0.466  Sum_probs=42.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHh-hCCCCCHHHHHHHHHHHH
Q 021816           25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAA-MIPGKTVVDVIKQYKELE   75 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa-~vPGRT~~qc~~rY~~L~   75 (307)
                      ....||+||.++|+++|++||.+    |.+||+ +||+||+.||++.|....
T Consensus         8 ~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY~wK   55 (63)
T 2yqk_A            8 IEKCWTEDEVKRFVKGLRQYGKN----FFRIRKELLPNKETGELITFYYYWK   55 (63)
T ss_dssp             CCCSCCHHHHHHHHHHHHHTCSC----HHHHHHHSCTTSCHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCcHHHHHHHHhccc
Confidence            45689999999999999999986    999998 699999999999997543

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.29  E-value=5.4e-10  Score=87.93  Aligned_cols=51  Identities=24%  Similarity=0.337  Sum_probs=45.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816           22 EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        22 ~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~   76 (307)
                      .....+.||+|||.+|.+++..||.    +|..||.+|||||..||++||..++.
T Consensus        12 p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~IA~~l~gRt~~q~k~r~~~~lr   62 (89)
T 2ltp_A           12 ENLYFQGWTEEEMGTAKKGLLEHGR----NWSAIARMVGSKTVSQCKNFYFNYKK   62 (89)
Confidence            3446778999999999999999986    49999999999999999999987765

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=98.80  E-value=2.5e-08  Score=77.73  Aligned_cols=47  Identities=23%  Similarity=0.376  Sum_probs=43.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhh----CCCCCHHHHHHHHHHHHH
Q 021816           27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAM----IPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~----vPGRT~~qc~~rY~~L~~   76 (307)
                      ..||+|||..|..+|.+||.+   +|..|+..    |+|||..||++||..++.
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g---~W~~I~~~~~~~~~~RT~~~lKdrWrnllk   51 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCC---CcHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence            469999999999999999976   59999996    899999999999999876

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=98.71  E-value=5.1e-09  Score=95.98  Aligned_cols=50  Identities=22%  Similarity=0.426  Sum_probs=45.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCc-----hhcchhcccCCCCHHHHHHHHHHHHHHHh
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGD-----WRNISRNFVTSRTPTQVASHAQKYFIRQL  185 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~-----W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~  185 (307)
                      .+||+|||++||+++++||..+     |..||+ ++++||+.||++||..|+.+..
T Consensus         9 ~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk-~LpGRT~nsIRnRw~~~L~~~l   63 (246)
T 1ign_A            9 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH-YVPNHTGNSIRHRFRVYLSKRL   63 (246)
T ss_dssp             CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT-TSTTSCHHHHHHHHHHTTGGGC
T ss_pred             CCCCHHHHHHHHHHHHHhCcCccccccHHHHHH-HcCCCCHHHHHHHHHHHHhhhc
Confidence            4899999999999999999843     999997 9999999999999999887653

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.71  E-value=2.2e-09  Score=81.90  Aligned_cols=44  Identities=32%  Similarity=0.705  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC---chhcchhcccCCCCHHHHHHHHH
Q 021816          134 GVPWTEEEHKLFLLGLKKHGKG---DWRNISRNFVTSRTPTQVASHAQ  178 (307)
Q Consensus       134 g~pWT~EEd~llL~~l~kyG~G---~W~~Ia~~~v~tRT~~Qv~sh~q  178 (307)
                      +.+||.||+++|..+|.+|+++   +|.+||. .||+||..+|+.||+
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~-~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQ-YVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGG-GSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-HcCCCCHHHHHHHHH
Confidence            4589999999999999999987   8999997 999999999999986

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.68  E-value=3.3e-08  Score=74.55  Aligned_cols=46  Identities=30%  Similarity=0.609  Sum_probs=41.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHh-hCCCCCHHHHHHHHHHH
Q 021816           25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAA-MIPGKTVVDVIKQYKEL   74 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa-~vPGRT~~qc~~rY~~L   74 (307)
                      ....||+||.++|+++|++||.+    |..||+ +||+||+.||++.|...
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY~w   53 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGKD----FNDIRQDFLPWKSLTSIIEYYYMW   53 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCSC----HHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCCHHHHHHHHHhh
Confidence            34679999999999999999986    999999 69999999999999843

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=98.62  E-value=6.7e-08  Score=71.97  Aligned_cols=54  Identities=33%  Similarity=0.390  Sum_probs=45.4

Q ss_pred             cCCCCCCHHHHHHHHHHHHHhCCC--chhcchhcc--cCCCCHHHHHHHHHHHHHHHhc
Q 021816          132 KKGVPWTEEEHKLFLLGLKKHGKG--DWRNISRNF--VTSRTPTQVASHAQKYFIRQLS  186 (307)
Q Consensus       132 kKg~pWT~EEd~llL~~l~kyG~G--~W~~Ia~~~--v~tRT~~Qv~sh~qky~~r~~s  186 (307)
                      +.+..||+|.|+.|+++|+.+|..  -++.|-+ +  |++.|..+|+||.|||+..+..
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~-~M~v~gLT~~~VkSHLQKYR~~l~r   62 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILD-LMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHH-HHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHH-HcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            456789999999999999999942  2778875 5  5688999999999999988763

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=98.57  E-value=1.1e-07  Score=77.21  Aligned_cols=52  Identities=21%  Similarity=0.340  Sum_probs=46.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhC----CCCCHHHHHHHHHHHHH
Q 021816           22 EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMI----PGKTVVDVIKQYKELEA   76 (307)
Q Consensus        22 ~~~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~v----PGRT~~qc~~rY~~L~~   76 (307)
                      .......||.|||..|..+|.+||.+   +|..|+..+    +|||..||+++|..++.
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~f~~RT~v~lKdrWrnllk   64 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTG---RWRDVKLCAFEDADHRTYVDLKDKWKTLVH   64 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSS---SHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence            44567899999999999999999976   599999966    89999999999999886

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.51  E-value=2.2e-07  Score=68.77  Aligned_cols=49  Identities=18%  Similarity=0.400  Sum_probs=44.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHH---hhCCCCCHHHHHHHHHHHHH
Q 021816           24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVA---AMIPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIA---a~vPGRT~~qc~~rY~~L~~   76 (307)
                      ..+..||+||++.|.+.|.+||..    |..|+   .++++||..+++++|..|..
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~----W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNH----WNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSC----HHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHh----HHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            356789999999999999999973    99999   57889999999999998865

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.50  E-value=9.5e-08  Score=86.95  Aligned_cols=49  Identities=27%  Similarity=0.482  Sum_probs=44.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816           24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~   76 (307)
                      .....||+||+++|+.|++.|+.+    |..||..|++||+.||+.+|.....
T Consensus       131 k~s~~WTeEE~~lFleAl~kYGKD----W~~IAk~VgTKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHSSC----HHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            346789999999999999999976    9999999999999999999987554

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=98.47  E-value=2.2e-07  Score=73.89  Aligned_cols=46  Identities=20%  Similarity=0.379  Sum_probs=42.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHH
Q 021816           26 STRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELE   75 (307)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~   75 (307)
                      ...||+||..+|++++..||++    |.+||++||+||+.||+++|....
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~----F~~Ia~~l~~Kt~~~cV~~YY~~K   88 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYYYLTK   88 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTC----HHHHHHTCTTCCHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHcCCC----HHHHHHHcCCCCHHHHHHHHhccc
Confidence            4689999999999999999986    999999999999999999997543

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=98.41  E-value=2.4e-07  Score=73.69  Aligned_cols=44  Identities=20%  Similarity=0.319  Sum_probs=40.3

Q ss_pred             cCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHH
Q 021816          132 KKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHA  177 (307)
Q Consensus       132 kKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~  177 (307)
                      .....||+||+++|++++..||+ +|..|+. ++++||..||-.+|
T Consensus        41 ~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~-~l~~Kt~~~cV~~Y   84 (94)
T 4a69_C           41 QVMNMWSEQEKETFREKFMQHPK-NFGLIAS-FLERKTVAECVLYY   84 (94)
T ss_dssp             HHTCCCCHHHHHHHHHHHHHSTT-CHHHHHH-TCTTCCHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCC-CHHHHHH-HcCCCCHHHHHHHH
Confidence            34468999999999999999999 9999996 99999999999985

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=97.89  E-value=1e-05  Score=59.06  Aligned_cols=47  Identities=15%  Similarity=0.335  Sum_probs=42.1

Q ss_pred             CCCCHHHHHHHHHHHHHh--------CCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKH--------GKGDWRNISRNFVTSRTPTQVASHAQKYF  181 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~ky--------G~G~W~~Ia~~~v~tRT~~Qv~sh~qky~  181 (307)
                      .+||+|||..|++.|.+|        |..-|+.|++..++.+|-.+++.||.|++
T Consensus         3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l   57 (59)
T 1fex_A            3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL   57 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence            589999999999999999        65579999975799999999999998864

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.85  E-value=1.6e-05  Score=79.32  Aligned_cols=48  Identities=27%  Similarity=0.491  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816           25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~   76 (307)
                      ....||.||..+|+.+|.+||.+    |..||..|++||+.||+.+|.....
T Consensus       379 ~~~~WT~eE~~~f~~al~~yGkd----w~~IA~~VgTKT~~Qvk~fy~~~kk  426 (482)
T 2xag_B          379 CNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVNYRR  426 (482)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHTTC----HHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            46789999999999999999986    9999999999999999999976433

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=97.82  E-value=0.00019  Score=66.87  Aligned_cols=51  Identities=14%  Similarity=0.148  Sum_probs=41.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhh--CCCCCHHHHHHHHHHHHH
Q 021816           25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAM--IPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~--vPGRT~~qc~~rY~~L~~   76 (307)
                      ..+.||+.|...|.+++-+||.- .+||+.|++.  |+.|+..++++-|..|.+
T Consensus         2 p~~~ltekEiR~l~Ra~~kfG~~-~~R~e~I~~dA~L~~ks~~~i~~~~~~li~   54 (270)
T 2xb0_X            2 PLGSIGESEVRALYKAILKFGNL-KEILDELIADGTLPVKSFEKYGETYDEMME   54 (270)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHSSC-TTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence            35789999999999999999953 3589999754  668999998888877654

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.75  E-value=4e-05  Score=60.92  Aligned_cols=50  Identities=10%  Similarity=0.103  Sum_probs=44.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhccc-----CCCCHHHHHHHHHHHHHHHhc
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFV-----TSRTPTQVASHAQKYFIRQLS  186 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v-----~tRT~~Qv~sh~qky~~r~~s  186 (307)
                      .+||.||...|++++++||. +|..|+. .+     ++||..++++++....+++..
T Consensus        31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~D-Ry~~~~~~~Rt~EdLK~RyY~v~~~l~~   85 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRRFDL-RFVVIHD-RYDHQQFKKRSVEDLKERYYHICAKLAN   85 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT-CHHHHHH-HSCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCC-Ceeeehh-hhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999 9999997 55     589999999998877777753

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.74  E-value=7.5e-05  Score=59.32  Aligned_cols=49  Identities=20%  Similarity=0.355  Sum_probs=44.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhC-----CCCCHHHHHHHHHHHHHhhh
Q 021816           27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAMI-----PGKTVVDVIKQYKELEADIS   79 (307)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~v-----PGRT~~qc~~rY~~L~~dV~   79 (307)
                      ..||.||+..|.+++..|+.    ||..|+..+     ++||+.++++||..+...+.
T Consensus        31 ~~WTkEETd~Lf~L~~~fdl----RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~   84 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLA   84 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT----CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCC----CeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence            78999999999999999997    599999999     58999999999998877554

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.65  E-value=8e-05  Score=58.88  Aligned_cols=49  Identities=18%  Similarity=0.376  Sum_probs=44.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816           27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~   76 (307)
                      ..||+|||+.+..++..-+.. ++.|..||..|.+|++.||.+||++|..
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s-~~tFa~iA~~L~Nks~nqV~~RFq~Lm~   82 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQ-PHTFSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSC-TTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCC-hhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            479999999999999987753 6789999999999999999999999876

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.53  E-value=0.00015  Score=57.27  Aligned_cols=52  Identities=23%  Similarity=0.352  Sum_probs=46.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC--CchhcchhcccCCCCHHHHHHHHHHHHHHHh
Q 021816          133 KGVPWTEEEHKLFLLGLKKHGK--GDWRNISRNFVTSRTPTQVASHAQKYFIRQL  185 (307)
Q Consensus       133 Kg~pWT~EEd~llL~~l~kyG~--G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~  185 (307)
                      +.+-||.|||+.||...++-|.  ..|..||. .+.+|++.||++|+|.++....
T Consensus        32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~-~L~Nks~nqV~~RFq~Lm~Lf~   85 (95)
T 1ug2_A           32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQ-QLGNKTPVEVSHRFRELMQLFH   85 (95)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHH-HHSSCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccCHHHHHHHHhcCCChhHHHHHHH-HHccCCHHHHHHHHHHHHHHHH
Confidence            5678999999999999999985  27999997 8999999999999998877665

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=97.47  E-value=0.00027  Score=51.37  Aligned_cols=50  Identities=8%  Similarity=0.157  Sum_probs=42.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-----CChhHHHHHh-hCCCCCHHHHHHHHHHHH
Q 021816           26 STRWTAAENKMFENALAVYDKD-----SPDRWQKVAA-MIPGKTVVDVIKQYKELE   75 (307)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~-----tpdRW~kIAa-~vPGRT~~qc~~rY~~L~   75 (307)
                      +..+|+|||++|...|+.|...     ...-|..+|+ .+|++|-..|++||.+-+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l   57 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL   57 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence            5689999999999999998432     3457999999 899999999999998754

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.51  E-value=2.3e-05  Score=58.83  Aligned_cols=48  Identities=15%  Similarity=0.259  Sum_probs=42.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816           27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~   76 (307)
                      -.||+|||+.+..++.+-|.. ++.|..||..| +||+.||.+||..|..
T Consensus        15 vlWTReeDR~IL~~cq~~G~s-~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPS-SKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            469999999999988877753 57799999999 8999999999999865

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.16  E-value=7.9e-05  Score=55.97  Aligned_cols=50  Identities=20%  Similarity=0.373  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC--CchhcchhcccCCCCHHHHHHHHHHHHHHHh
Q 021816          134 GVPWTEEEHKLFLLGLKKHGK--GDWRNISRNFVTSRTPTQVASHAQKYFIRQL  185 (307)
Q Consensus       134 g~pWT~EEd~llL~~l~kyG~--G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~  185 (307)
                      ..-||.|||+.||..+++-|.  ..|..||. .+ +||+.||.++++.++....
T Consensus        14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~-~L-nks~~QV~~RF~~Lm~Lf~   65 (70)
T 2lr8_A           14 IILWTRNDDRVILLECQKRGPSSKTFAYLAA-KL-DKNPNQVSERFQQLMKLFE   65 (70)
Confidence            457999999999999999986  26999997 66 9999999999997765543

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=96.91  E-value=0.0026  Score=50.43  Aligned_cols=50  Identities=22%  Similarity=0.373  Sum_probs=44.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCC-----CCCHHHHHHHHHHHHHhhhh
Q 021816           27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAMIP-----GKTVVDVIKQYKELEADISN   80 (307)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vP-----GRT~~qc~~rY~~L~~dV~~   80 (307)
                      ..||.||...|-.++..|+.    ||..|+....     .||++|+++||..+...+..
T Consensus        31 ~~WT~eETd~LfdLc~~fdl----Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~   85 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN   85 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT----CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCC----CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            57999999999999999997    5999999885     69999999999988776543

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.61  E-value=0.0034  Score=48.09  Aligned_cols=56  Identities=11%  Similarity=0.311  Sum_probs=44.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC------CCCChhHHHHHhhCC----CCCHHHHHHHHHHHHHhhhh
Q 021816           25 KSTRWTAAENKMFENALAVYD------KDSPDRWQKVAAMIP----GKTVVDVIKQYKELEADISN   80 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~------~~tpdRW~kIAa~vP----GRT~~qc~~rY~~L~~dV~~   80 (307)
                      ....||.+|..+|+.+.....      ......|+.||..|-    .||+.||..+|+.|...-+.
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~   68 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKK   68 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCS
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            467899999999999887522      122357999999875    69999999999999886443

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=96.51  E-value=0.003  Score=59.73  Aligned_cols=48  Identities=27%  Similarity=0.499  Sum_probs=43.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHHH
Q 021816          136 PWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQ  184 (307)
Q Consensus       136 pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~  184 (307)
                      .||..+...|+.|+.+||+.+|..||. .|+++|+.+|+.+++-++.|-
T Consensus       112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA~-ev~~Kt~eEV~~Y~~vFw~ry  159 (304)
T 1ofc_X          112 AWTKRDFNQFIKANEKYGRDDIDNIAK-DVEGKTPEEVIEYNAVFWERC  159 (304)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTT-SSTTCCHHHHHHHHHHHHHHG
T ss_pred             ccCHHHHHHHHHHHHHhCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHhH
Confidence            499999999999999999999999997 999999999999988666554

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=95.93  E-value=0.013  Score=46.51  Aligned_cols=51  Identities=10%  Similarity=0.145  Sum_probs=44.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhccc----CCCCHHHHHHHHHHHHHHHhc
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFV----TSRTPTQVASHAQKYFIRQLS  186 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v----~tRT~~Qv~sh~qky~~r~~s  186 (307)
                      ..||.||-..|++++++|+. +|--|+..|-    +.||..+++.|+-...+++..
T Consensus        31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~   85 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN   85 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            46999999999999999998 9999996443    479999999998888777753

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=95.84  E-value=0.0092  Score=45.63  Aligned_cols=51  Identities=14%  Similarity=0.309  Sum_probs=39.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----CC-----chhcchhcccC----CCCHHHHHHHHHHHHHHHh
Q 021816          134 GVPWTEEEHKLFLLGLKKHG----KG-----DWRNISRNFVT----SRTPTQVASHAQKYFIRQL  185 (307)
Q Consensus       134 g~pWT~EEd~llL~~l~kyG----~G-----~W~~Ia~~~v~----tRT~~Qv~sh~qky~~r~~  185 (307)
                      +..||.+|-.+||.+...+-    .+     .|..||. .+.    .||+.||+..|..+...-.
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~-~m~~~G~~rs~~qC~~K~~nL~k~Yk   67 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISS-KMREKGFDRSPDMCTDKWRNLLKEFK   67 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            45799999999999987522    11     6999996 432    7999999999986655543

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=95.02  E-value=0.021  Score=50.00  Aligned_cols=50  Identities=16%  Similarity=0.203  Sum_probs=41.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--CCchhcchhc-ccCCCCHHHHHHHHHHHHHH
Q 021816          134 GVPWTEEEHKLFLLGLKKHG--KGDWRNISRN-FVTSRTPTQVASHAQKYFIR  183 (307)
Q Consensus       134 g~pWT~EEd~llL~~l~kyG--~G~W~~Ia~~-~v~tRT~~Qv~sh~qky~~r  183 (307)
                      ...||+.|-+.|+.++.+||  .++|..|+.. -+..||...|+..+..+..+
T Consensus         7 ~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~   59 (211)
T 4b4c_A            7 IKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG   59 (211)
T ss_dssp             -CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            34799999999999999999  6799999852 26799999999887765544

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=94.15  E-value=0.2  Score=36.92  Aligned_cols=53  Identities=13%  Similarity=0.179  Sum_probs=40.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhh--CCCCCHHHHHHHHHHHHHh
Q 021816           24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAM--IPGKTVVDVIKQYKELEAD   77 (307)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~--vPGRT~~qc~~rY~~L~~d   77 (307)
                      ..+-.||+|..+.|..||...|.+. --+..|.+.  ++|.|..+|.-|.++.--.
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~-AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~   59 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVER-AVPKKILDLMNVDKLTRENVASHLQKFRVA   59 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTT-CCHHHHHHHHCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCC-CCcHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence            3456899999999999999998431 236677666  4689999999887765443

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=89.25  E-value=0.42  Score=46.27  Aligned_cols=47  Identities=21%  Similarity=0.388  Sum_probs=41.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhcchhcccC-CCCHHHHHHHHHHHHHH
Q 021816          136 PWTEEEHKLFLLGLKKHGKGDWRNISRNFVT-SRTPTQVASHAQKYFIR  183 (307)
Q Consensus       136 pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~-tRT~~Qv~sh~qky~~r  183 (307)
                      .||.-+=..|+.|+.+||+.+-..||. .|. ++|+.+|+.+++-++.|
T Consensus       125 ~WnrrDF~~FI~a~~kyGR~d~~~IA~-ev~~~Kt~eEV~~Y~~vFw~R  172 (374)
T 2y9y_A          125 NWNKLEFRKFITVSGKYGRNSIQAIAR-ELAPGKTLEEVRAYAKAFWSN  172 (374)
T ss_dssp             CSCHHHHHHHHHHHHHHCTTCHHHHHS-SCCCSSSHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHHHHhCHhHHHHHHH-HHccCCCHHHHHHHHHHHHHh
Confidence            499999999999999999999999997 787 99999999888765554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	307
d2cqqa1	59	a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1	3e-20
d2cqqa1	59	a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1	2e-05
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	2e-16
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	9e-15
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	3e-07
d2crga1	57	a.4.1.3 (A:8-64) Metastasis associated protein MTA	2e-14
d2crga1	57	a.4.1.3 (A:8-64) Metastasis associated protein MTA	2e-04
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	5e-10
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	9e-06
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	3e-09
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	1e-08
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	1e-08
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	1e-05
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	3e-08
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	2e-06
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	9e-06
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	8e-05
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	5e-04

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (199), Expect = 3e-20
 Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 26 STRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGL 85
          +  WT  +      ++  +   +P RW+K+A  + G++V DV  + K+L+  ++    G+
Sbjct: 1  APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTC-SPGM 58

Query: 86 I 86
          +
Sbjct: 59 V 59

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (92), Expect = 2e-05
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 5/46 (10%)

Query: 137 WTEEEHKLFLLGLKKHGKGD---WRNISRNFVTSRTPTQVASHAQK 179
           WTEE+       + K   G    W  I+      R+ T V + A++
Sbjct: 4   WTEEDLSQLTRSMVKFPGGTPGRWEKIAH--ELGRSVTDVTTKAKQ 47

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 70.3 bits (172), Expect = 2e-16
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 130 ERKKGVPWTEEEHKLFLLGLKKHGKGDWR--NISRN-FVTSRTPTQVASHAQKYFIRQ 184
           ++K  V WT E H  FL  +   G        I     V   T   VASH QK+ +  
Sbjct: 3   QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 65.7 bits (160), Expect = 9e-15
 Identities = 33/59 (55%), Positives = 41/59 (69%)

Query: 29 WTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIP 87
          W+A ENK FE ALAVYDKD+PDRW  VA  + G+T  +V K Y+ L  DI  IE+G +P
Sbjct: 4  WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVP 62

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 44.9 bits (106), Expect = 3e-07
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 134 GVPWTEEEHKLFLLGLKKHGKGDWRNISR--NFVTSRTPTQVASH 176
           G PW+ +E+K F   L  + K      +     V  RTP +V  H
Sbjct: 1   GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKH 45

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.8 bits (158), Expect = 2e-14
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 137 WTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLSGGKDKRR 193
           W+  E  LF   L+K+GK D+ +I ++F+  ++ T +  +   Y  +       ++R
Sbjct: 4   WSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYY--YMWKTTDRYVQQKR 57

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.7 bits (85), Expect = 2e-04
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 5/45 (11%)

Query: 28 RWTAAENKMFENALAVYDKDSPDRWQKVAA-MIPGKTVVDVIKQY 71
           W+A+E  +FE AL  Y KD    +  +    +P K++  +I+ Y
Sbjct: 3  EWSASEACLFEEALEKYGKD----FNDIRQDFLPWKSLTSIIEYY 43

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 5e-10
 Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 128 EHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASH 176
             +R+    W+E+E + F     +H K ++  I+      +T  +   +
Sbjct: 11  YKDRQVMNMWSEQEKETFREKFMQHPK-NFGLIASFLER-KTVAECVLY 57

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 9e-06
 Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 22 EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQY 71
          +      W+  E + F      + K+    +  +A+ +  KTV + +  Y
Sbjct: 13 DRQVMNMWSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYY 58

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (120), Expect = 3e-09
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLSGGKDKRRA 194
           V WT EE +LF  GL K G+  W  IS+  + SRT  QV S+A++YF  ++  G DK   
Sbjct: 3   VKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKCGLDKETP 60

Query: 195 S 195
           +
Sbjct: 61  N 61

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (117), Expect = 1e-08
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 131 RKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIR 183
           +K    WT EE  L +  ++K+G+ D++ IS   + +++  QV +    Y  R
Sbjct: 2   QKCNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRR 52

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (115), Expect = 1e-08
 Identities = 20/53 (37%), Positives = 27/53 (50%)

Query: 22 EESKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKEL 74
            S    WT  + K+ E AL  Y + S D W K+A  +P K+  D I +YK L
Sbjct: 8  ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL 60

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (93), Expect = 1e-05
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 128 EHERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISR--NFVTSRTPTQVASH 176
           E  R    PWT+ + KL  L L+++ +G      +    V S++     + 
Sbjct: 6   ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIAR 56

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 3e-08
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 137 WTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF 181
           WT +E    L  +   G G+W++++   + ++T  +   H  KYF
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVAN-QMCTKTKEECEKHYMKYF 47

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 2e-06
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 132 KKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFV-TSRTPTQV 173
           K+   W  EE K    G++K+G+G+W  I  ++   +RT   +
Sbjct: 1   KRQ-AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVML 42

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 9e-06
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 132 KKGVPWTEEEHKLFLLGLKKHGKGDWRNISRN-FVTSRTPTQV 173
           KK   WT EE +    G++K+G+G+W  IS+N    +RT   +
Sbjct: 1   KKQ-KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 42

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (87), Expect = 8e-05
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 136 PWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKY 180
            WT EE +     ++++G  DW+ I+  ++ +RT  Q     QK 
Sbjct: 3   RWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQKV 46

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.5 bits (82), Expect = 5e-04
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 132 KKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKY 180
            KG PWT+EE +  +  ++K+G   W  I+++    R   Q       +
Sbjct: 2   IKG-PWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNH 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	307
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.78
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.61
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.57
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.54
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.49
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.47
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.46
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.45
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.36
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.36
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.36
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.32
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.3
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.29
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.29
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.28
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.27
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.24
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.24
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.2
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.16
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.12
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.08
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.07
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.06
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.06
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	99.05
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.05
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.98
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.9
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.67
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.59
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.54
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	98.17
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	97.96
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	97.17
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	97.11
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.95
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	96.25
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	95.56
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	94.36
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	93.47
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	91.25
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	90.44

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.78  E-value=2.1e-19  Score=131.60  Aligned_cols=63  Identities=52%  Similarity=0.894  Sum_probs=60.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhcCCCC
Q 021816           26 STRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISNIEAGLIPL   88 (307)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~IEsG~v~~   88 (307)
                      +.+||+|||++|++||+.|+.+.+++|.+||.+|||||+.||++||+.|.+||+.||+|.||+
T Consensus         1 G~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~dik~iesg~vpf   63 (63)
T d2cjja1           1 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF   63 (63)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CcCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHHhhccccCCCCC
Confidence            467999999999999999999999999999999999999999999999999999999998874

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.8e-16  Score=113.88  Aligned_cols=52  Identities=25%  Similarity=0.629  Sum_probs=49.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 021816           26 STRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADI   78 (307)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV   78 (307)
                      ..+||+||+++|++||++||.++|+||++||++| |||+.||+.||+.|.+++
T Consensus         1 a~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~e~~   52 (59)
T d2cqqa1           1 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV   52 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHHHhc
Confidence            3689999999999999999999999999999999 899999999999998754

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.5e-16  Score=106.88  Aligned_cols=45  Identities=27%  Similarity=0.631  Sum_probs=43.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816          136 PWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF  181 (307)
Q Consensus       136 pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~  181 (307)
                      .||+|||.+||++|++||.++|..||. +|++||+.||+.||++||
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~-~~~~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVAN-QMCTKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHH-HHTTSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHH-HcCCCCHHHHHHHHHHhC
Confidence            499999999999999999989999997 999999999999999997

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.2e-15  Score=106.82  Aligned_cols=51  Identities=39%  Similarity=0.683  Sum_probs=47.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 021816           24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKEL   74 (307)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L   74 (307)
                      .....||.|||++|++||..|+.+++++|.+||.+|||||+.||+.||+.|
T Consensus        10 ~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1          10 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            456789999999999999999999999999999999999999999999875

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.8e-14  Score=105.06  Aligned_cols=50  Identities=46%  Similarity=0.775  Sum_probs=46.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHHHhc
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLS  186 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~s  186 (307)
                      +.||+|||++|+++|.+||+ +|..||. +|++||+.||++||++|+.+...
T Consensus         3 ~~WT~eEd~~l~~~~~~~G~-~W~~Ia~-~~~~Rt~~q~k~ry~~~~~~~~k   52 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVK   52 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHhcc-hHHHHHH-HcCCCCHHHHHHHHHHHHHHHHh
Confidence            36999999999999999997 9999997 99999999999999999988764

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=1.5e-14  Score=101.90  Aligned_cols=46  Identities=24%  Similarity=0.449  Sum_probs=43.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF  181 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~  181 (307)
                      +|||+|||++|++++++||.++|..||+ ++++||+.||++||++|+
T Consensus         4 g~WT~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qc~~Rw~~~L   49 (52)
T d1gvda_           4 GPWTKEEDQRLIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL   49 (52)
T ss_dssp             CSCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHH-HHCCCCHHHHHHHHHhhC
Confidence            5899999999999999999889999997 999999999999999874

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=3.6e-14  Score=98.96  Aligned_cols=46  Identities=28%  Similarity=0.538  Sum_probs=43.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF  181 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~  181 (307)
                      .+||+|||++|+.+|++||.++|..||. +|++||+.||+.||++|+
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L   47 (50)
T d1guua_           2 TRWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQKVL   47 (50)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHH-TSTTCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHH-HHCCCCHHHHHHHHHhhC
Confidence            3799999999999999999889999997 999999999999999885

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=2.8e-14  Score=98.62  Aligned_cols=45  Identities=27%  Similarity=0.614  Sum_probs=42.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYF  181 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~  181 (307)
                      .|||+|||++|++++++||. +|..||+ +||+||+.||++||..++
T Consensus         2 ~~WT~eED~~L~~~v~~~G~-~W~~Ia~-~~~gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           2 TSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCHHHHHHHHHHHHHHSS-CHHHHHT-TCTTCCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHhh-HHHHHHh-HcCCCCHHHHHHHHHHHc
Confidence            48999999999999999999 9999997 999999999999998764

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.2e-13  Score=94.92  Aligned_cols=46  Identities=26%  Similarity=0.514  Sum_probs=41.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhcc-cCCCCHHHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNF-VTSRTPTQVASHAQKY  180 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~-v~tRT~~Qv~sh~qky  180 (307)
                      .+||+|||++|+++|++||.|+|..|+..+ +.+||+.||+.+|+.|
T Consensus         3 ~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl   49 (52)
T d1w0ta_           3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM   49 (52)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence            589999999999999999999999999733 4699999999999875

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.36  E-value=3.9e-13  Score=97.71  Aligned_cols=48  Identities=35%  Similarity=0.622  Sum_probs=42.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCc---hhcchhcccCCCCHHHHHHHHHHHHH
Q 021816          134 GVPWTEEEHKLFLLGLKKHGKGD---WRNISRNFVTSRTPTQVASHAQKYFI  182 (307)
Q Consensus       134 g~pWT~EEd~llL~~l~kyG~G~---W~~Ia~~~v~tRT~~Qv~sh~qky~~  182 (307)
                      |.+||+|||++|+.+|++||.|.   |.+||. +|++||+.||+.||+++..
T Consensus         1 G~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~-~l~gRt~~qc~~r~~~L~~   51 (63)
T d2cjja1           1 GRPWSAKENKAFERALAVYDKDTPDRWANVAR-AVEGRTPEEVKKHYEILVE   51 (63)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HSTTCCHHHHHHHHHHHHH
T ss_pred             CcCCCHHHHHHHHHHHHHHCCCCchHHHHHHH-HcCCCCHHHHHHHHHHHHH
Confidence            45899999999999999999874   999997 9999999999999975443

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.2e-13  Score=95.28  Aligned_cols=48  Identities=29%  Similarity=0.549  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhcc-cCCCCHHHHHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNF-VTSRTPTQVASHAQKYFI  182 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~-v~tRT~~Qv~sh~qky~~  182 (307)
                      .+||+|||++|+++|++||.|+|..|++.+ +++||+.||+.+|+.|..
T Consensus         3 ~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k   51 (55)
T d1w0ua_           3 QKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR   51 (55)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhc
Confidence            489999999999999999998999999733 579999999999987643

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=9.6e-13  Score=94.65  Aligned_cols=46  Identities=28%  Similarity=0.572  Sum_probs=42.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCC---chhcchhcccCCCCHHHHHHHHHH
Q 021816          133 KGVPWTEEEHKLFLLGLKKHGKG---DWRNISRNFVTSRTPTQVASHAQK  179 (307)
Q Consensus       133 Kg~pWT~EEd~llL~~l~kyG~G---~W~~Ia~~~v~tRT~~Qv~sh~qk  179 (307)
                      ...+||+|||++|+++|.+||.|   +|.+||. +||+||+.||+.||+.
T Consensus        11 ~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~-~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1          11 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR-CVPSKSKEDCIARYKL   59 (60)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGG-GCSSSCHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHcCCccchHHHHHHH-HcCCCCHHHHHHHHHH
Confidence            44589999999999999999987   5999996 9999999999999973

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=2e-12  Score=89.90  Aligned_cols=47  Identities=23%  Similarity=0.549  Sum_probs=43.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816           27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~   76 (307)
                      +.||+|||.+|..+|.+|+.+   +|..||..|||||..||++||..+++
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   48 (50)
T d1guua_           2 TRWTREEDEKLKKLVEQNGTD---DWKVIANYLPNRTDVQCQHRWQKVLN   48 (50)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSS---CHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            579999999999999999965   39999999999999999999998765

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=1.9e-12  Score=90.85  Aligned_cols=49  Identities=16%  Similarity=0.365  Sum_probs=44.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816           25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~   76 (307)
                      .+++||+|||++|.++|+.|+.+   +|..||+.|||||..||++||...++
T Consensus         2 ~rg~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qc~~Rw~~~L~   50 (52)
T d1gvda_           2 IKGPWTKEEDQRLIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            36789999999999999999865   49999999999999999999998654

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=1.6e-13  Score=105.97  Aligned_cols=51  Identities=8%  Similarity=0.240  Sum_probs=45.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC--CChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816           26 STRWTAAENKMFENALAVYDKD--SPDRWQKVAAMIPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~--tpdRW~kIAa~vPGRT~~qc~~rY~~L~~   76 (307)
                      ++.||+|||++|.++|.+||..  ....|.+||..|||||..||++||...++
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~   53 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLS   53 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTG
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            3679999999999999999852  34569999999999999999999998776

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.2e-12  Score=88.75  Aligned_cols=45  Identities=29%  Similarity=0.393  Sum_probs=41.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 021816           27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKEL   74 (307)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L   74 (307)
                      ..||.|||.+|.+||.+||.+   +|..||.+|||||+.||+.||.+.
T Consensus         2 ~~Wt~eEd~~L~~~v~~~G~~---nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           2 PSWTAQEEMALLEAVMDCGFG---NWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSSCHHHHHHHHHHHHHTCTT---CHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCc---cHHHHHHHcCCCCHHHHHHHHHHh
Confidence            459999999999999999965   499999999999999999999763

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.27  E-value=3e-12  Score=93.75  Aligned_cols=56  Identities=32%  Similarity=0.367  Sum_probs=46.5

Q ss_pred             ccCCCCCCHHHHHHHHHHHHHhCCCch--hcchhc-ccCCCCHHHHHHHHHHHHHHHhc
Q 021816          131 RKKGVPWTEEEHKLFLLGLKKHGKGDW--RNISRN-FVTSRTPTQVASHAQKYFIRQLS  186 (307)
Q Consensus       131 rkKg~pWT~EEd~llL~~l~kyG~G~W--~~Ia~~-~v~tRT~~Qv~sh~qky~~r~~s  186 (307)
                      +|.+..||+|||+.|++||+.||.++|  +.|... .|+++|..||+||+|||+.++..
T Consensus         4 kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k   62 (64)
T d1irza_           4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHh
Confidence            355678999999999999999998444  466642 28999999999999999998863

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.6e-12  Score=94.67  Aligned_cols=46  Identities=28%  Similarity=0.485  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFI  182 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~  182 (307)
                      .+||+||+.+|++++.+||+ +|..||. +|+|||+.||++||.+|.+
T Consensus         6 ~~WT~eE~~~f~~~~~~~G~-~w~~Ia~-~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           6 ARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             SSCCHHHHHHHHHHHHHHSS-CHHHHHH-HHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHhCc-hHHHHHH-HcCCCCHHHHHHHHHHHHh
Confidence            47999999999999999998 9999997 9999999999999887643

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.2e-12  Score=94.91  Aligned_cols=46  Identities=22%  Similarity=0.327  Sum_probs=42.2

Q ss_pred             ccCCCCCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHH
Q 021816          131 RKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQ  178 (307)
Q Consensus       131 rkKg~pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~q  178 (307)
                      ++...+||+||+++|+++|.+||+ +|..||. +|++||..||++||.
T Consensus        14 ~~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~-~~~~rt~~q~~~~yy   59 (68)
T d1xc5a1          14 RQVMNMWSEQEKETFREKFMQHPK-NFGLIAS-FLERKTVAECVLYYY   59 (68)
T ss_dssp             TTTTTCCCTTTHHHHHHHHHHTTS-CSSSHHH-HTTTSCHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHCC-cHHHHHH-HcCCCCHHHHHHHHH
Confidence            345578999999999999999998 9999997 999999999999974

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=1.3e-11  Score=84.97  Aligned_cols=45  Identities=24%  Similarity=0.574  Sum_probs=42.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHH
Q 021816           27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELE   75 (307)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~   75 (307)
                      .+||+|||++|..++..||.    +|..||.+|||||..||+.||..++
T Consensus         2 ~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           2 TSWTEEEDRIIYQAHKRLGN----RWAEIAKLLPGRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCHHHHHHHHHHHHHHSS----CHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHhh----HHHHHHhHcCCCCHHHHHHHHHHHc
Confidence            68999999999999999996    4999999999999999999998764

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2e-11  Score=88.48  Aligned_cols=48  Identities=29%  Similarity=0.634  Sum_probs=43.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 021816           26 STRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEAD   77 (307)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~d   77 (307)
                      ...||+|||.+|..||.+||.+    |..||.+|||||..||+.||..++..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~----W~~Ia~~~~~Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRR----WTKISKLIGSRTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSC----HHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcch----HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            3579999999999999999964    99999999999999999999987663

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.12  E-value=4.2e-11  Score=91.32  Aligned_cols=49  Identities=16%  Similarity=0.356  Sum_probs=44.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhcchhcc---cCCCCHHHHHHHHHHHHHHH
Q 021816          136 PWTEEEHKLFLLGLKKHGKGDWRNISRNF---VTSRTPTQVASHAQKYFIRQ  184 (307)
Q Consensus       136 pWT~EEd~llL~~l~kyG~G~W~~Ia~~~---v~tRT~~Qv~sh~qky~~r~  184 (307)
                      |||.|||+.|+.+|++||.|+|..|++.+   +++||+.||+.+|.+|....
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~   53 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhh
Confidence            89999999999999999999999999643   68999999999999887654

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=2.5e-11  Score=93.53  Aligned_cols=50  Identities=22%  Similarity=0.426  Sum_probs=44.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCc-----hhcchhcccCCCCHHHHHHHHHHHHHHHh
Q 021816          135 VPWTEEEHKLFLLGLKKHGKGD-----WRNISRNFVTSRTPTQVASHAQKYFIRQL  185 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G~-----W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~  185 (307)
                      .+||+|||++|+.++.+||..+     |..||. +||+||+.||+.||++|+....
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~-~lpgRt~~qcr~Rw~~~L~p~l   56 (86)
T d1igna1           2 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH-YVPNHTGNSIRHRFRVYLSKRL   56 (86)
T ss_dssp             CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT-TSTTSCHHHHHHHHHHTTGGGC
T ss_pred             CCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHH-HcCCCCHHHHHHHHHHHcCccc
Confidence            3799999999999999999743     999997 9999999999999998876653

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.07  E-value=7.9e-11  Score=89.79  Aligned_cols=47  Identities=23%  Similarity=0.376  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhh----CCCCCHHHHHHHHHHHHH
Q 021816           27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAM----IPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~----vPGRT~~qc~~rY~~L~~   76 (307)
                      ++||.|||.+|..+|.+||.+   +|..||..    +++||..||++||..++.
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~---~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~   51 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcc---cHHHHHHHHHhhccCCCHHHHHHHHHHHhh
Confidence            479999999999999999976   49999975    789999999999999876

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.7e-10  Score=80.60  Aligned_cols=47  Identities=17%  Similarity=0.435  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCC--CCCHHHHHHHHHHHH
Q 021816           26 STRWTAAENKMFENALAVYDKDSPDRWQKVAAMIP--GKTVVDVIKQYKELE   75 (307)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vP--GRT~~qc~~rY~~L~   75 (307)
                      ..+||+|||.+|.++|..||.+   +|..||..++  |||..||++||..+.
T Consensus         2 r~~WT~eED~~L~~~v~~~G~~---~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           2 RQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCC---CHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            5689999999999999999975   4999999866  899999999998875

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=9.8e-11  Score=85.04  Aligned_cols=48  Identities=27%  Similarity=0.491  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 021816           25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~   76 (307)
                      ....||+||+.+|..++..||.+    |..||++|||||+.||+++|..+..
T Consensus         4 ~~~~WT~eE~~~f~~~~~~~G~~----w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           4 CNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSC----HHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCch----HHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            34679999999999999999965    9999999999999999999987654

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=1.2e-10  Score=82.92  Aligned_cols=42  Identities=29%  Similarity=0.494  Sum_probs=39.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHH
Q 021816          136 PWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQ  178 (307)
Q Consensus       136 pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~q  178 (307)
                      .||+||.++|++|+.+||+ +|..|++.+||+||..||.++|.
T Consensus         3 ~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~~Ks~~~~v~fYY   44 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYY   44 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc-cHHHHHHHHcCCCCHHHHHHHHH
Confidence            6999999999999999999 99999976789999999999963

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.7e-10  Score=80.39  Aligned_cols=48  Identities=15%  Similarity=0.479  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhh--CCCCCHHHHHHHHHHHHH
Q 021816           26 STRWTAAENKMFENALAVYDKDSPDRWQKVAAM--IPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~--vPGRT~~qc~~rY~~L~~   76 (307)
                      ...||+|||++|..+|+.||.+   +|..||..  +++||..||++||..++.
T Consensus         2 r~~WT~eEd~~L~~~V~~~G~~---~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k   51 (55)
T d1w0ua_           2 KQKWTVEESEWVKAGVQKYGEG---NWAAISKNYPFVNRTAVMIKDRWRTMKR   51 (55)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCC---hHHHHHhhcCCCCcCHHHHHHHHHHHhc
Confidence            4689999999999999999965   49999998  459999999999998876

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.4e-10  Score=84.94  Aligned_cols=48  Identities=19%  Similarity=0.353  Sum_probs=43.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHH
Q 021816           24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELE   75 (307)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~   75 (307)
                      .....||+||+.+|..|+..||.+    |.+||..|||||..||+++|....
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~----w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSC----SSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCc----HHHHHHHcCCCCHHHHHHHHHHHH
Confidence            345679999999999999999965    999999999999999999998654

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=7.8e-10  Score=86.33  Aligned_cols=52  Identities=23%  Similarity=0.376  Sum_probs=46.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCc---hhcchhcccCCCCHHHHHHHHHHHHHHHhc
Q 021816          133 KGVPWTEEEHKLFLLGLKKHGKGD---WRNISRNFVTSRTPTQVASHAQKYFIRQLS  186 (307)
Q Consensus       133 Kg~pWT~EEd~llL~~l~kyG~G~---W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~s  186 (307)
                      +...||.|||+.||+.++++|. +   |..||+ ++++||+.||++||+.+++....
T Consensus        32 ~~~~WTrEEDriIL~~~q~~G~-~~~tw~~Ia~-~L~~Rs~~qvr~Rf~~Lm~lf~~   86 (95)
T d1ug2a_          32 KVVLWTREADRVILTMCQEQGA-QPHTFSVISQ-QLGNKTPVEVSHRFRELMQLFHT   86 (95)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHH-HHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHHHHHcCC-cHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHH
Confidence            4468999999999999999997 5   999997 99999999999999977776653

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=1.5e-08  Score=71.89  Aligned_cols=44  Identities=32%  Similarity=0.665  Sum_probs=40.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCChhHHHHHh-hCCCCCHHHHHHHHHHHH
Q 021816           28 RWTAAENKMFENALAVYDKDSPDRWQKVAA-MIPGKTVVDVIKQYKELE   75 (307)
Q Consensus        28 ~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa-~vPGRT~~qc~~rY~~L~   75 (307)
                      .||+||-++|++++..||.+    |.+||+ +||+||+.||+++|....
T Consensus         3 ~WT~eE~~~F~~~~~~yGKd----f~~I~~~~v~~Ks~~~~v~fYY~~K   47 (57)
T d2crga1           3 EWSASEACLFEEALEKYGKD----FNDIRQDFLPWKSLTSIIEYYYMWK   47 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCSC----HHHHHHTTCSSSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHccc----HHHHHHHHcCCCCHHHHHHHHHHHh
Confidence            59999999999999999987    999997 579999999999997543

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=5.5e-08  Score=75.68  Aligned_cols=52  Identities=19%  Similarity=0.339  Sum_probs=45.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 021816           25 KSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEAD   77 (307)
Q Consensus        25 ~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~d   77 (307)
                      ....||+|||+.+...+..++. .++-|..||+.|+|||..||++||+.|..-
T Consensus        32 ~~~~WTrEEDriIL~~~q~~G~-~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~l   83 (95)
T d1ug2a_          32 KVVLWTREADRVILTMCQEQGA-QPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHHHHHcCC-cHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4567999999999999999984 345599999999999999999999988763

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=3.3e-08  Score=70.77  Aligned_cols=44  Identities=27%  Similarity=0.503  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---chhcchhcccCCCCHHHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGKG---DWRNISRNFVTSRTPTQVASHAQKY  180 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G---~W~~Ia~~~v~tRT~~Qv~sh~qky  180 (307)
                      ..||.||+++|..+|.+|+.|   +|.+||. +| +||..||..+|+.+
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~-~v-gkt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAH-EL-GRSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HH-TSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHH-HH-CCCHHHHHHHHHHH
Confidence            369999999999999999876   7999997 88 89999999998744

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=2.5e-06  Score=62.33  Aligned_cols=50  Identities=26%  Similarity=0.478  Sum_probs=46.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHH
Q 021816           24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKE   73 (307)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~   73 (307)
                      .....|+++|...|..||+..++..|.-|..||..|+.||+.+|-+.|.+
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~   55 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYME   55 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHh
Confidence            34578999999999999999999999999999999999999999999975

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.96  E-value=1e-05  Score=56.10  Aligned_cols=50  Identities=24%  Similarity=0.341  Sum_probs=44.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHhhhh
Q 021816           28 RWTAAENKMFENALAVYDKDSPDRWQKVAAMIPGKTVVDVIKQYKELEADISN   80 (307)
Q Consensus        28 ~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vPGRT~~qc~~rY~~L~~dV~~   80 (307)
                      .|++.|-..|.+|+++||.+.   -+.||..|.|||..||.+.++.+......
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d---~~~Ia~e~~~Kt~eEV~~Y~~vFw~ry~e   50 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDD---IDNIAKDVEGKTPEEVIEYNAVFWERCTE   50 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTC---HHHHTTSSTTCCHHHHHHHHHHHHHHGGG
T ss_pred             CCCHHHHHHHHHHHHHHHHhh---HHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            499999999999999999864   89999999999999999988888775443

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.17  E-value=0.00019  Score=58.12  Aligned_cols=49  Identities=22%  Similarity=0.388  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCc---hhcch-----------hcccCCCCHHHHHHHHHHHHH
Q 021816          134 GVPWTEEEHKLFLLGLKKHGKGD---WRNIS-----------RNFVTSRTPTQVASHAQKYFI  182 (307)
Q Consensus       134 g~pWT~EEd~llL~~l~kyG~G~---W~~Ia-----------~~~v~tRT~~Qv~sh~qky~~  182 (307)
                      +..+|+|||+.||.++.+||.|+   |..|.           .+|+.+||+..+.-|+.-++.
T Consensus        49 ~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~  111 (128)
T d1ofcx2          49 GKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLIT  111 (128)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHH
Confidence            34699999999999999999998   99884           578999999999999985443

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.11  E-value=0.00046  Score=47.53  Aligned_cols=49  Identities=27%  Similarity=0.480  Sum_probs=44.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhcchhcccCCCCHHHHHHHHHHHHHHHh
Q 021816          136 PWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQL  185 (307)
Q Consensus       136 pWT~EEd~llL~~l~kyG~G~W~~Ia~~~v~tRT~~Qv~sh~qky~~r~~  185 (307)
                      .|+.-|=..|+.|+++||+.+-..||. .|.+||+.+|+.+++-+..|-.
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~-e~~~Kt~eEV~~Y~~vFw~ry~   49 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAK-DVEGKTPEEVIEYNAVFWERCT   49 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTT-SSTTCCHHHHHHHHHHHHHHGG
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHH-HhcCCCHHHHHHHHHHHHHHHH
Confidence            399999999999999999989999997 9999999999999987776643

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.95  E-value=0.0013  Score=47.03  Aligned_cols=50  Identities=16%  Similarity=0.248  Sum_probs=39.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCChhH--HHHHhh--CCCCCHHHHHHHHHHHHH
Q 021816           24 SKSTRWTAAENKMFENALAVYDKDSPDRW--QKVAAM--IPGKTVVDVIKQYKELEA   76 (307)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW--~kIAa~--vPGRT~~qc~~rY~~L~~   76 (307)
                      ..+-.||+||-+.|..||..+|.+   +|  ..|...  +||+|..+|.-|.+++-.
T Consensus         5 k~R~~WT~elH~~Fv~Av~~lG~~---~atpk~I~~~m~v~~lT~~qV~SHlQKYrl   58 (64)
T d1irza_           5 KPRVLWTHELHNKFLAAVDHLGVE---RAVPKKILDLMNVDKLTRENVASHLQKFRV   58 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTT---TCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCcc---ccchHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            345689999999999999999864   34  455554  789999999988776543

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.25  E-value=0.0045  Score=41.12  Aligned_cols=42  Identities=26%  Similarity=0.501  Sum_probs=34.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhcchh--cccCCCCHHHHHHHHH
Q 021816          136 PWTEEEHKLFLLGLKKHGKGDWRNISR--NFVTSRTPTQVASHAQ  178 (307)
Q Consensus       136 pWT~EEd~llL~~l~kyG~G~W~~Ia~--~~v~tRT~~Qv~sh~q  178 (307)
                      .||.||-..|+.|+++||. .|..|-=  -|-++|+...++-.+.
T Consensus         3 nft~eEv~YL~~GVK~~G~-~WNsILWs~PF~~GR~~vdLA~Ky~   46 (49)
T d1x58a1           3 DFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYH   46 (49)
T ss_dssp             SCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcc-hhhhhhhccCCCCCchhhHHHHHHH
Confidence            5999999999999999999 9999961  1457899988776443

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0049  Score=43.20  Aligned_cols=46  Identities=13%  Similarity=0.296  Sum_probs=38.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC--------chhcchhcccCCCCHHHHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGKG--------DWRNISRNFVTSRTPTQVASHAQKY  180 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~G--------~W~~Ia~~~v~tRT~~Qv~sh~qky  180 (307)
                      .++|.|||+.|+.-|.++..+        -|+.+++.-++.+|-...++||.|.
T Consensus         3 ~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~   56 (59)
T d1fexa_           3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKH   56 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            589999999999999998532        4999985457999999999997765

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.36  E-value=0.079  Score=34.95  Aligned_cols=44  Identities=20%  Similarity=0.482  Sum_probs=39.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCC---CCCHHHHHHHHHHH
Q 021816           27 TRWTAAENKMFENALAVYDKDSPDRWQKVAAMIP---GKTVVDVIKQYKEL   74 (307)
Q Consensus        27 ~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vP---GRT~~qc~~rY~~L   74 (307)
                      ..||+||..-|-..|..++..    |..|-=.+|   ||++.|+.++|..|
T Consensus         2 knft~eEv~YL~~GVK~~G~~----WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMGNH----WNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSC----HHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcch----hhhhhhccCCCCCchhhHHHHHHHhh
Confidence            469999999999999999976    999987776   99999999999876

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.47  E-value=0.063  Score=38.55  Aligned_cols=42  Identities=24%  Similarity=0.438  Sum_probs=36.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CchhcchhcccCCCCHHHHHHHH
Q 021816          135 VPWTEEEHKLFLLGLKKHGK---GDWRNISRNFVTSRTPTQVASHA  177 (307)
Q Consensus       135 ~pWT~EEd~llL~~l~kyG~---G~W~~Ia~~~v~tRT~~Qv~sh~  177 (307)
                      ..|+++|=..|-.++.-+.+   |-|..+|. .|.+||..+|.-.|
T Consensus         9 ~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~-~VGtRSaeECQ~ky   53 (73)
T d1wgxa_           9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAA-AVGSRSPEECQRKY   53 (73)
T ss_dssp             SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHH-HTTTSCHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHhcCCCCCccHHHHHH-HHccCCHHHHHHHH
Confidence            47999999999999998775   46999997 99999999998743

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.25  E-value=0.27  Score=33.89  Aligned_cols=50  Identities=8%  Similarity=0.157  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-----CChhHHHHHh-hCCCCCHHHHHHHHHHHH
Q 021816           26 STRWTAAENKMFENALAVYDKD-----SPDRWQKVAA-MIPGKTVVDVIKQYKELE   75 (307)
Q Consensus        26 ~~~WT~EEdk~Le~Ala~y~~~-----tpdRW~kIAa-~vPGRT~~qc~~rY~~L~   75 (307)
                      +...|.|||++|.+-|+.+...     ...-|..++. .+|..|-.--++||.+-+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L   57 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL   57 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            4679999999999999987543     2456999985 689999999999997643

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.44  E-value=0.32  Score=38.49  Aligned_cols=55  Identities=18%  Similarity=0.308  Sum_probs=46.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCChhHHHHHhhCC------------CCCHHHHHHHHHHHHHhh
Q 021816           24 SKSTRWTAAENKMFENALAVYDKDSPDRWQKVAAMIP------------GKTVVDVIKQYKELEADI   78 (307)
Q Consensus        24 ~~~~~WT~EEdk~Le~Ala~y~~~tpdRW~kIAa~vP------------GRT~~qc~~rY~~L~~dV   78 (307)
                      ..+...|.|||.-|.-++..||-+.++-|+.|-..|-            .||+.++-+|...|+.-|
T Consensus        47 nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (128)
T d1ofcx2          47 NKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI  113 (128)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             cCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHH
Confidence            3456799999999999999999998888999865552            899999999998887654