Citrus Sinensis ID: 021823

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
MEFFHNAKAVRLRSHHDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKSCYGKYLTASNQPFLLGMTGRKVIQSVPGRLDSSVEWEPVREANQVKLKTRYGHFLRANGGLPPWRNSVTHDIPHRTATQDWILWDVDVVEIQVHSPSPSPTGQQQAPPPPSISHSDSLNSYSSSPSSVPINSGKFSRQESNDSYVGSPPKSEGRTIYYHMADETGEVDDDSLQGFAMTFKGNGVDELTQKLREELGIQDIVVCTRSPLNGKLYPLRLQLPPNNSDMHVIVVPQSSKVAREFLKERTASA
ccccccccEEEEEcccccEEEEEcccccEEEcccccccccEEEEEEEcccccEEEEEEccccccccccccccccccccEEEEccccccccccEEEEEEcccEEEEEccccccEEEccccccccccEEEEcccccccccEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccEEEEEEEccHHHHHHHHHHHHccccEEEEEEcccccccccEEEccccccccEEEEEEccccHHHHHHHccccccc
ccccccccEEEEEcccccEEEEcccccEEEEccccccccEEEEEEEccccccEEEEEcccccEEEcccccccccccccEEEEcccccccccEEEEEEccccEEEEEcccccEEEEccccccccccEEEEcccccccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccEEEEEccccHHHHHHHHHHHHccccEEEEEEcccccccEEEEEEcccccccEEEEEEccccHHHHHHHcHccccc
meffhnakavrlrshhdkfliaeedeesvtqdrngssksakwtvesvpgsqniiRLKSCYgkyltasnqpfllgmtgrkviqsvpgrldssvewepVREANQVKLKTRYGhflrangglppwrnsvthdiphrtatqdwilwDVDVVEiqvhspspsptgqqqappppsishsdslnsyssspssvpinsgkfsrqesndsyvgsppksegrtiyyhmadetgevdddslqGFAMTFKGNGVDELTQKLREELGIQDIvvctrsplngklyplrlqlppnnsdmhvivVPQSSKVAREFLKERTASA
meffhnakavrlrshhdkfliaeedeesvtqdrngssksakwtvesvpgsqniIRLKSCYGKYLTASNQPFLLGMTGRKVIQSVPgrldssvewepVREANQVKLKTRYGHFLRANGGLPPWRNSVTHDIPHRTATQDWILWDVDVVEIQVHSPSPSPTGQQQAPPPPSISHSDSLNSYSSSPSSVPINSGkfsrqesndsyvgsppksegrTIYYHMADETGEVDDDSLQGFAMTFKGNGVDELTQKLREELGIQDIVVCTRSPLNGKLYPLRLQLPPNNSDMHVIVVPQSSKVAREFLKERTASA
MEFFHNAKAVRLRSHHDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKSCYGKYLTASNQPFLLGMTGRKVIQSVPGRLDSSVEWEPVREANQVKLKTRYGHFLRANGGLPPWRNSVTHDIPHRTATQDWILWDVDVVEIQVHSPSPSPTGQQQAPPPPsishsdslnsyssspssvpinsGKFSRQESNDSYVGSPPKSEGRTIYYHMADETGEVDDDSLQGFAMTFKGNGVDELTQKLREELGIQDIVVCTRSPLNGKLYPLRLQLPPNNSDMHVIVVPQSSKVAREFLKERTASA
************************************************GSQNIIRLKSCYGKYLTASNQPFLLGMTGRKVIQSVPGRLDSSVEWEPVREANQVKLKTRYGHFLRANGGLPPWRNSVTHDIPHRTATQDWILWDVDVVEIQV**************************************************************IYYHMA*********SLQGFAMTFKGNGVDELTQKLREELGIQDIVVCTRSPLNGKLYPLRLQLPP***DMHVIVV******************
MEFFHNAKAVRLRSHHDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKSCYGKYLTASNQPFLLGMTGRKVIQSVPGRLDSSVEWEPVREANQVKLKTRYGHFLRANGGLPPWRNSVTHDIPHRTATQDWILWDVDVVE**************************************************************GRTIYYHMADETGEVDDDSLQGFAMTFKGNGVDELTQKLREELGIQDIVVCTRSPLNGKLYPLRLQLPPNNSDMHVIVVPQSSKVAREF*KER****
MEFFHNAKAVRLRSHHDKFLIAEE*********************SVPGSQNIIRLKSCYGKYLTASNQPFLLGMTGRKVIQSVPGRLDSSVEWEPVREANQVKLKTRYGHFLRANGGLPPWRNSVTHDIPHRTATQDWILWDVDVVEIQVH********************************************************SEGRTIYYHMADETGEVDDDSLQGFAMTFKGNGVDELTQKLREELGIQDIVVCTRSPLNGKLYPLRLQLPPNNSDMHVIVVPQSSKVAREFLKERTASA
*EFFHNAKAVRLRSHHDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKSCYGKYLTASNQPFLLGMTGRKVIQSVPGRLDSSVEWEPVREANQVKLKTRYGHFLRANGGLPPWRNSVTHDIPHRTATQDWILWDVDVVEIQVH***************************************************GSPPKSEGRTIYYHMADETGEVDDDSLQGFAMTFKGNGVDELTQKLREELGIQDIVVCTRSPLNGKLYPLRLQLPPNNSDMHVIVVPQSSKVAREFLKER****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEFFHNAKAVRLRSHHDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKSCYGKYLTASNQPFLLGMTGRKVIQSVPGRLDSSVEWEPVREANQVKLKTRYGHFLRANGGLPPWRNSVTHDIPHRTATQDWILWDVDVVEIQVHSPSPSPTGQQQAPPPPSISHSDSLNSYSSSPSSVPINSGKFSRQESNDSYVGSPPKSEGRTIYYHMADETGEVDDDSLQGFAMTFKGNGVDELTQKLREELGIQDIVVCTRSPLNGKLYPLRLQLPPNNSDMHVIVVPQSSKVAREFLKERTASA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query307
224100431302 predicted protein [Populus trichocarpa] 0.964 0.980 0.751 1e-131
118485407302 unknown [Populus trichocarpa] 0.964 0.980 0.751 1e-131
255558270301 conserved hypothetical protein [Ricinus 0.947 0.966 0.762 1e-125
356526882 496 PREDICTED: uncharacterized protein LOC10 0.938 0.580 0.726 1e-125
224100235296 predicted protein [Populus trichocarpa] 0.944 0.979 0.734 1e-122
449478700 863 PREDICTED: uncharacterized protein LOC10 0.944 0.336 0.678 1e-119
449434845297 PREDICTED: uncharacterized protein LOC10 0.954 0.986 0.675 1e-119
388493298293 unknown [Medicago truncatula] 0.934 0.979 0.692 1e-115
359473294 494 PREDICTED: uncharacterized protein LOC10 0.954 0.593 0.696 1e-115
296086446 736 unnamed protein product [Vitis vinifera] 0.954 0.398 0.696 1e-114
>gi|224100431|ref|XP_002311873.1| predicted protein [Populus trichocarpa] gi|222851693|gb|EEE89240.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/302 (75%), Positives = 263/302 (87%), Gaps = 6/302 (1%)

Query: 1   MEFFHNAKAVRLRSHHDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKSCY 60
           M+FFH AKAVRLRSHHDK+L+AE+DEESV QDR+GSSK+A+W VE VPGS  IIRLKSCY
Sbjct: 1   MDFFHKAKAVRLRSHHDKYLLAEDDEESVIQDRDGSSKTARWIVELVPGSDFIIRLKSCY 60

Query: 61  GKYLTASNQPFLLGMTGRKVIQSVPGRLDSSVEWEPVREANQVKLKTRYGHFLRANGGLP 120
           GKYLTASNQPFLLGMTGRKV+Q++P RLDSSVEWEPVRE  Q+KLKTRYG+FLRANGGLP
Sbjct: 61  GKYLTASNQPFLLGMTGRKVLQTLPRRLDSSVEWEPVREGGQMKLKTRYGNFLRANGGLP 120

Query: 121 PWRNSVTHDIPHRTATQDWILWDVDVVEIQVHSPSPSPTGQQQAPPPPSI-SHSDSLNSY 179
           PWRNSVTHD+PHRT+TQDW+LWDVDV+EIQVH    S TG   AP    I SH+DSL+  
Sbjct: 121 PWRNSVTHDVPHRTSTQDWVLWDVDVLEIQVHQ---SHTG--HAPDLNKIMSHADSLDFE 175

Query: 180 SSSPSSVPINSGKFSRQESNDSYVGSPPKSEGRTIYYHMADETGEVDDDSLQGFAMTFKG 239
           S+SP+S+ I SG FSRQES+DS+V SP KSEGRTIYYH+ADE+GEVDDD+  G+++ FKG
Sbjct: 176 STSPTSLSIKSGNFSRQESSDSHVTSPRKSEGRTIYYHVADESGEVDDDATVGYSLNFKG 235

Query: 240 NGVDELTQKLREELGIQDIVVCTRSPLNGKLYPLRLQLPPNNSDMHVIVVPQSSKVAREF 299
           NGVDELTQKL+E+ G++DIVVCTRSPLN KLYPLRLQLPPNN+DMHVI+V  SS  AR+F
Sbjct: 236 NGVDELTQKLKEDTGLEDIVVCTRSPLNAKLYPLRLQLPPNNADMHVILVQSSSNAARDF 295

Query: 300 LK 301
            K
Sbjct: 296 AK 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|118485407|gb|ABK94560.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255558270|ref|XP_002520162.1| conserved hypothetical protein [Ricinus communis] gi|223540654|gb|EEF42217.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356526882|ref|XP_003532045.1| PREDICTED: uncharacterized protein LOC100785006 [Glycine max] Back     alignment and taxonomy information
>gi|224100235|ref|XP_002311797.1| predicted protein [Populus trichocarpa] gi|222851617|gb|EEE89164.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449478700|ref|XP_004155396.1| PREDICTED: uncharacterized protein LOC101230181 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449434845|ref|XP_004135206.1| PREDICTED: uncharacterized protein LOC101205876 [Cucumis sativus] Back     alignment and taxonomy information
>gi|388493298|gb|AFK34715.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|359473294|ref|XP_002274433.2| PREDICTED: uncharacterized protein LOC100257102 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296086446|emb|CBI32035.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query307
TAIR|locus:2025876300 AT1G59710 "AT1G59710" [Arabido 0.964 0.986 0.629 7.7e-103
TAIR|locus:2205744519 AT1G27100 "AT1G27100" [Arabido 0.954 0.564 0.586 1.2e-90
TAIR|locus:2196774279 AT1G69890 "AT1G69890" [Arabido 0.908 1.0 0.587 4.1e-88
TAIR|locus:2095547335 AT3G28630 "AT3G28630" [Arabido 0.947 0.868 0.555 1.6e-86
TAIR|locus:1006230249292 AT3G01311 "AT3G01311" [Arabido 0.488 0.513 0.638 6.7e-75
TAIR|locus:2196764397 AT1G69900 "AT1G69900" [Arabido 0.485 0.375 0.633 1.8e-48
TAIR|locus:2025876 AT1G59710 "AT1G59710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1019 (363.8 bits), Expect = 7.7e-103, P = 7.7e-103
 Identities = 192/305 (62%), Positives = 237/305 (77%)

Query:     1 MEFFHNAKAVRLRSHHDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKSCY 60
             ME F  AKAVRLRSHHDK+L+A+EDEESVTQ+RNGS+ +AKWTVE +PGS N+IRLKS Y
Sbjct:     1 MEIFQKAKAVRLRSHHDKYLVADEDEESVTQERNGSAGAAKWTVEIIPGSTNLIRLKSAY 60

Query:    61 GKYLTASNQPFLLGMTGRKVIQSVPGRLDSSVEWEPVREANQVKLKTRYGHFLRANGGLP 120
             GKYLTASN+PFLLG TG+KV+Q+ P RLDSS+ WEP+R++  VKLKTRYG+FLR NGGLP
Sbjct:    61 GKYLTASNKPFLLGATGKKVLQTKPSRLDSSLAWEPIRDSALVKLKTRYGNFLRGNGGLP 120

Query:   121 PWRNSVTHDIPHRTATQDWILWDVDVVEI---QVHSPSPSPTGQQQAPPPPXXXXXXXXX 177
             PWRNSVTHDIPHR+ATQ+W+LW +DVVEI     +S       Q Q PP P         
Sbjct:   121 PWRNSVTHDIPHRSATQEWVLWHIDVVEILPANANSDHHHQHLQLQQPPSPLHHSDSLDF 180

Query:   178 XXXXXXXXXXXXXGKFSRQESNDSY-VGSPPKSEGRTIYYHMADETGEVDDDSLQGFAMT 236
                           +F RQES DS  VGSPPKSEGR IYYH+AD+  +V+DDS++  + T
Sbjct:   181 TPGSPSRSD-----RFFRQESTDSLAVGSPPKSEGRVIYYHVADDDDDVEDDSVEVSSFT 235

Query:   237 FKGNGVDELTQKLREELGIQDIVVCTRSPLNGKLYPLRLQLPPNNSDMHVIVVPQSSKVA 296
             FKGNGV+ELT +L+EE  ++D++VCTRSPLNGKL+PLRLQLPPNN+DM V++VP+SSK+A
Sbjct:   236 FKGNGVEELTMRLKEESNVEDVIVCTRSPLNGKLFPLRLQLPPNNADMTVVLVPKSSKIA 295

Query:   297 REFLK 301
              +F+K
Sbjct:   296 EKFIK 300
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2205744 AT1G27100 "AT1G27100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196774 AT1G69890 "AT1G69890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095547 AT3G28630 "AT3G28630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1006230249 AT3G01311 "AT3G01311" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196764 AT1G69900 "AT1G69900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00082009
SubName- Full=Putative uncharacterized protein; (302 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query307
pfam04601142 pfam04601, DUF569, Protein of unknown function (DU 1e-94
cd00257119 cd00257, Fascin, Fascin-like domain; members inclu 1e-05
>gnl|CDD|113374 pfam04601, DUF569, Protein of unknown function (DUF569) Back     alignment and domain information 
 Score =  276 bits (707), Expect = 1e-94
 Identities = 114/142 (80%), Positives = 129/142 (90%)

Query: 1   MEFFHNAKAVRLRSHHDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKSCY 60
           ME F+ AKAVRLRSHHDK+L+A+EDEE+VTQ RNGSSK A+WTVE VPGS  +IRLKSCY
Sbjct: 1   MEIFNKAKAVRLRSHHDKYLVADEDEETVTQSRNGSSKRARWTVEPVPGSPKVIRLKSCY 60

Query: 61  GKYLTASNQPFLLGMTGRKVIQSVPGRLDSSVEWEPVREANQVKLKTRYGHFLRANGGLP 120
           GKYLTASN+PFLLG TG+KV Q+ P RLDSS EWEPVRE +QVKLKTRYG++LRANGGLP
Sbjct: 61  GKYLTASNEPFLLGATGKKVTQTKPFRLDSSTEWEPVREGSQVKLKTRYGNYLRANGGLP 120

Query: 121 PWRNSVTHDIPHRTATQDWILW 142
           PWRNSVTHDIPHR+ATQDW+LW
Sbjct: 121 PWRNSVTHDIPHRSATQDWVLW 142

Family of hypothetical proteins. Some family members contain a two copies of the region. Length = 142
>gnl|CDD|238160 cd00257, Fascin, Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 307
PF04601142 DUF569: Protein of unknown function (DUF569); Inte 100.0
cd00257119 Fascin Fascin-like domain; members include actin-b 99.03
PF06268111 Fascin: Fascin domain; InterPro: IPR022768 This fa 98.18
cd00257119 Fascin Fascin-like domain; members include actin-b 98.01
PF04601142 DUF569: Protein of unknown function (DUF569); Inte 97.83
PF06268111 Fascin: Fascin domain; InterPro: IPR022768 This fa 97.39
PF06229191 FRG1: FRG1-like family; InterPro: IPR010414 This e 96.91
PF06229191 FRG1: FRG1-like family; InterPro: IPR010414 This e 96.6
PF00167122 FGF: Fibroblast growth factor; InterPro: IPR002348 94.96
KOG3962246 consensus Predicted actin-bundling protein [Cytosk 94.35
cd00058123 FGF Acidic and basic fibroblast growth factor fami 92.15
PF14200105 RicinB_lectin_2: Ricin-type beta-trefoil lectin do 91.66
smart00791139 Agglutinin Amaranthus caudatus agglutinin or amara 91.64
smart00442126 FGF Acidic and basic fibroblast growth factor fami 91.49
smart0047257 MIR Domain in ryanodine and inositol trisphosphate 89.92
PF00167122 FGF: Fibroblast growth factor; InterPro: IPR002348 88.69
smart0047257 MIR Domain in ryanodine and inositol trisphosphate 86.98
PF05270142 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterP 86.22
cd00058123 FGF Acidic and basic fibroblast growth factor fami 82.96
PF14200105 RicinB_lectin_2: Ricin-type beta-trefoil lectin do 80.9
smart00791139 Agglutinin Amaranthus caudatus agglutinin or amara 80.19
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins Back     alignment and domain information 
Probab=100.00  E-value=6.2e-63  Score=423.66  Aligned_cols=142  Identities=67%  Similarity=1.163  Sum_probs=139.3

Q ss_pred             CCCCCCCcEEEEeecCCceEeeecCCCeEEecCCCCCCCCeeEEEeecCCCCEEEecccCCCccccCCCCCCCCCCcceE
Q 021823            1 MEFFHNAKAVRLRSHHDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKSCYGKYLTASNQPFLLGMTGRKV   80 (307)
Q Consensus         1 ME~F~d~~~VRLRs~~g~YL~ADeDg~~Vs~~~~~~s~na~W~Ve~~~~~~~~vlL~sAYGRYL~as~~~~~~G~~G~~v   80 (307)
                      ||+|+|++||||||++||||||||||++|+|+++|+|+||+|+||+++++.++|||||||||||+||+.+|++||+|++|
T Consensus         1 Me~F~d~~~VRLRS~~~kYL~ADeDg~~Vs~~~~~~s~na~W~Ve~v~~~~~~v~L~saYGrYL~as~~~~~lG~~G~~v   80 (142)
T PF04601_consen    1 MEFFPDGKHVRLRSHHGKYLHADEDGEGVSQDRRGASLNAAWTVERVPGSPNYVRLRSAYGRYLAASDEPALLGHTGRRV   80 (142)
T ss_pred             CCccCCCCEEEEEecCCCEEEEcCCCCeEEECCCCCCCcceEEEEEecCCCCEEEEeeccCceEeccCCcCCCCCCCCEE
Confidence            99999999999999999999999999999999999999999999999877899999999999999999999999999999


Q ss_pred             EeeCCCCCCCCcceeEEeeCCEEEEecCCcceeccCCCCCCCCcceEeeCCCCCCccceEee
Q 021823           81 IQSVPGRLDSSVEWEPVREANQVKLKTRYGHFLRANGGLPPWRNSVTHDIPHRTATQDWILW  142 (307)
Q Consensus        81 ~Q~~~~~~d~~v~W~~v~~g~~V~Lr~~~gr~LRANg~~~pwr~~VTvD~~~~~~~~~~~~W  142 (307)
                      +|++++.+|+++|||||++|++|+||+++||||||||+++||||+||||++++++|++||+|
T Consensus        81 ~Q~~~~~~d~~~~Wepvr~g~~V~Lr~~~gr~LRANG~~~~Wrn~VT~D~~~~s~~~~wv~w  142 (142)
T PF04601_consen   81 VQTDPDRLDSSVEWEPVRDGFYVKLRHRSGRYLRANGGYPPWRNSVTVDVPHRSATQDWVLW  142 (142)
T ss_pred             EecCCccCCCCceEEEecCCCEEEEEecCCceEEcCCCCCCCcceEEecCCCCCeEEEEEEC
Confidence            99999889999999999999999999999999999999999999999999999999999998

Some family members contain two copies of the region.
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) Back     alignment and domain information
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins Back     alignment and domain information
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) Back     alignment and domain information
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins Back     alignment and domain information
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins Back     alignment and domain information
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD) Back     alignment and domain information
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD) Back     alignment and domain information
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures Back     alignment and domain information
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton] Back     alignment and domain information
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin Back     alignment and domain information
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A Back     alignment and domain information
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain Back     alignment and domain information
>smart00442 FGF Acidic and basic fibroblast growth factor family Back     alignment and domain information
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases Back     alignment and domain information
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures Back     alignment and domain information
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases Back     alignment and domain information
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins Back     alignment and domain information
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin Back     alignment and domain information
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A Back     alignment and domain information
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query307
3llp_A 493 Fascin; beta-trefoil, actin bundling protein, canc 5e-13
3llp_A 493 Fascin; beta-trefoil, actin bundling protein, canc 6e-06
3llp_A493 Fascin; beta-trefoil, actin bundling protein, canc 8e-05
1hcd_A118 Hisactophilin; actin binding; NMR {Dictyostelium d 2e-04
2yug_A155 Protein FRG1; spliceosome, facioscapulohumeral mus 7e-04
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* Length = 493 Back     alignment and structure
 Score = 68.2 bits (166), Expect = 5e-13
 Identities = 31/219 (14%), Positives = 67/219 (30%), Gaps = 18/219 (8%)

Query: 12  LRSHHDKFLIAEEDEESVTQDRNGSSKSAKWTVESVP--GSQNIIRLKSCYGKYLTASNQ 69
           L +  +K+L AE     V    +   K   WT+E  P       + L+S  G+YL A   
Sbjct: 16  LINCGNKYLTAEAFGFKVNASASSLKKKQIWTLEQPPDEAGSAAVCLRSHLGRYLAADK- 74

Query: 70  PFLLGMTGRKVIQSVPGRLDSSVEWEPVREANQVKLKTRYGHFLRANGGLPPWRNSVTHD 129
                  G    +      D         +         +  +           + ++  
Sbjct: 75  ------DGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTE------DRLSCF 122

Query: 130 IPHRTATQDWILWDVDVVEIQVHSPSPSPTGQQQAPPPPSISHSDSLNSYSSSPSSVPIN 189
               +  + W +      ++ ++S +        A P   I+    +     S  ++   
Sbjct: 123 AQTVSPAEKWSVHIAMHPQVNIYSVTRKRYAHLSARPADEIAVDRDVPWGVDSLITLAFQ 182

Query: 190 SGKFSRQESNDSYV---GSPPKSEGRTIYYHMADETGEV 225
             ++S Q ++  ++   G           Y +   +G+V
Sbjct: 183 DQRYSVQTADHRFLRHDGRLVARPEPATGYTLEFRSGKV 221
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* Length = 493 Back     alignment and structure
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* Length = 493 Back     alignment and structure
>1hcd_A Hisactophilin; actin binding; NMR {Dictyostelium discoideum} SCOP: b.42.5.2 PDB: 1hce_A Length = 118 Back     alignment and structure
>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy, FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR {Mus musculus} Length = 155 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query307
3llp_A 493 Fascin; beta-trefoil, actin bundling protein, canc 98.65
2yug_A155 Protein FRG1; spliceosome, facioscapulohumeral mus 98.13
2yug_A155 Protein FRG1; spliceosome, facioscapulohumeral mus 98.12
3llp_A493 Fascin; beta-trefoil, actin bundling protein, canc 97.33
1t9f_A187 Protein 1D10; structural genomics, PSI, protein st 97.12
3mal_A199 Stromal cell-derived factor 2-like protein; trefoi 96.59
2xoa_A 559 Ryanodine receptor 1; metal transport, calcium cha 96.33
3pg0_A165 Threefoil; symmetric design, beta-trefoil, enginee 95.93
3nbc_A148 Ricin B-like lectin; lactose, sugar BIND protein; 95.63
3uj4_A 604 Inositol 1,4,5-trisphosphate receptor type 1; APO- 94.72
3vsf_A526 Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactana 94.4
3q7x_A132 De novo designed beta-trefoil architecture with S 94.39
1rg8_A146 Heparin-binding growth factor 1; beta-trefoil, hor 93.15
1bfg_A146 Basic fibroblast growth factor; 1.60A {Homo sapien 92.91
1qql_A140 Fibroblast growth factor 7/1 chimera; beta-trefoil 92.79
1nun_A145 Fibroblast growth factor-10; beta-trefoil fold, im 92.77
1q1u_A144 FGF-12, fibrobast growth factor homologous factor 92.64
1ijt_A128 FGF4, fibroblast growth factor 4; B-trefoil fold, 92.02
3ef2_A293 Agglutinin, lectin; beta-trefoil, calcium-binding, 92.0
1t9f_A187 Protein 1D10; structural genomics, PSI, protein st 91.48
3snv_A143 Symfoil-4T/permutation #1 synthetic protein; beta- 91.03
3p6i_A142 De novo designed beta-trefoil architecture with S 90.0
1ihk_A174 GLIA-activating factor; B-trefoil fold, hormone/gr 89.99
3f1r_A211 FGF-20, fibroblast growth factor 20; beta-trefoil 89.3
3uj4_A604 Inositol 1,4,5-trisphosphate receptor type 1; APO- 89.24
2fdb_M164 FGF8B, fibroblast growth factor 8 isoform B; beta- 88.99
3kmv_A157 Alpha-L-arabinofuranosidase B; protein:carboydrate 88.93
1jlx_A303 Agglutinin, amaranthin, ACA; complex (lectin/sacch 88.0
3snv_A143 Symfoil-4T/permutation #1 synthetic protein; beta- 87.97
3hbw_A193 Fibroblast growth factor 13; beta-trefoil fold, al 87.56
3mal_A199 Stromal cell-derived factor 2-like protein; trefoi 87.4
2p39_A155 Fibroblast growth factor 23; atypical beta-trefoil 87.22
3p6j_A142 De novo designed beta-trefoil architecture with S 87.0
3phz_A286 Ricin B-related lectin; beta trefoil, saccharide b 84.97
3q7x_A132 De novo designed beta-trefoil architecture with S 84.18
2xoa_A559 Ryanodine receptor 1; metal transport, calcium cha 83.96
3p6i_A142 De novo designed beta-trefoil architecture with S 80.75
1jlx_A303 Agglutinin, amaranthin, ACA; complex (lectin/sacch 80.44
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* 4gov_A 4goy_A 4gp3_A 4gp0_A* Back     alignment and structure
Probab=98.65  E-value=2.7e-08  Score=99.82  Aligned_cols=111  Identities=23%  Similarity=0.396  Sum_probs=79.1

Q ss_pred             CCcEEEEeecCCceEeeecCCCeEEecCCCCCCCCeeEEEeecCCCCEEEecc-cCCCccccCCCCC-----CCC-----
Q 021823            6 NAKAVRLRSHHDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKS-CYGKYLTASNQPF-----LLG-----   74 (307)
Q Consensus         6 d~~~VRLRs~~g~YL~ADeDg~~Vs~~~~~~s~na~W~Ve~~~~~~~~vlL~s-AYGRYL~as~~~~-----~~G-----   74 (307)
                      +...|+||||||+||.||.||. |+.+....+....|.++..  .+...-||+ .|||||+.+.+..     -++     
T Consensus        56 ~~~~~~lks~~G~yL~~d~~G~-v~~~~~~~~~~~~f~~~~~--~dG~w~lq~~~~g~yl~~~~~~~~c~~~~~~~~~~w  132 (493)
T 3llp_A           56 GSAAVCLRSHLGRYLAADKDGN-VTCEREVPGPDCRFLIVAH--DDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKW  132 (493)
T ss_dssp             CCCCBCEECTTSCEEEECTTSC-EEEEESSCCGGGCEEEEEC--TTSEEEEEETTTCCEEEEEBTEEEEEESSCCGGGCE
T ss_pred             CccEEEEecCCCcEeecCCCCc-EEeCcccCCCCceEEEEEC--CCCeEEEEEcccCceecCCCceEEEEeccCCcccee
Confidence            3567999999999999999997 9999988899999999874  448899999 9999999876630     011     


Q ss_pred             --------------CCcce-EEeeCC--C--CCCCCcceeE------EeeCCEEEEecCCcceeccCCCC
Q 021823           75 --------------MTGRK-VIQSVP--G--RLDSSVEWEP------VREANQVKLKTRYGHFLRANGGL  119 (307)
Q Consensus        75 --------------~~G~~-v~Q~~~--~--~~d~~v~W~~------v~~g~~V~Lr~~~gr~LRANg~~  119 (307)
                                    ...++ |.....  +  ..|..|.|-.      +..++.+-|++..++||+++|++
T Consensus       133 ~~~la~hpqv~l~s~~r~~y~~l~~~~~~~~~~d~~~pwg~d~~~~l~f~~g~y~l~t~~~~fL~~dg~L  202 (493)
T 3llp_A          133 SVHIAMHPQVNIYSVTRKRYAHLSARPADEIAVDRDVPWGVDSLITLAFQDQRYSVQTADHRFLRHDGRL  202 (493)
T ss_dssp             EEEECSCCEEEEEETTTTEEEEEEC--CCEEEEEESSCCSGGGCEEEEECSSSEEEECTTSCEECTTSCE
T ss_pred             eeeeccCcEEEEeecccceeEEcCCCCCCeEEECCCCCCCCCeeEEEEECCCcEEEEECCCceECCCCcc
Confidence                          11111 222111  1  1356777742      11245678889899999998875
>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy, FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy, FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* 4gov_A 4goy_A 4gp3_A 4gp0_A* Back     alignment and structure
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1 Back     alignment and structure
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} SCOP: b.42.6.0 Back     alignment and structure
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus} Back     alignment and structure
>3pg0_A Threefoil; symmetric design, beta-trefoil, engineered module, sugar BIN NOVO protein; HET: BTB GOL; 1.62A {Artificial gene} Back     alignment and structure
>3nbc_A Ricin B-like lectin; lactose, sugar BIND protein; HET: LAT; 1.01A {Clitocybe nebularis} PDB: 3nbd_A* 3nbe_A* Back     alignment and structure
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A* Back     alignment and structure
>3vsf_A Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactanase, sugar binding protein; 2.76A {Clostridium thermocellum} PDB: 3vsz_A* 3vt0_A* 3vt1_B* 3vt2_A* Back     alignment and structure
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A Back     alignment and structure
>1rg8_A Heparin-binding growth factor 1; beta-trefoil, hormone/growth factor complex; 1.10A {Homo sapiens} SCOP: b.42.1.1 PDB: 1jqz_A 3fjb_A 1jt3_A 1jt4_A 1jtc_A 3baq_A 3bah_A 3fja_A 3fj9_A 3fjk_A 3hom_A 3fjc_A 3ba5_A 3fjh_A 1jt5_A 1k5v_A 3fjj_A 1jy0_A 3bao_A 3fjf_A ... Back     alignment and structure
>1bfg_A Basic fibroblast growth factor; 1.60A {Homo sapiens} SCOP: b.42.1.1 PDB: 1iil_A 1ii4_A 1bas_A 1bla_A 1bld_A 1bfb_A* 1bfc_A* 4fgf_A 1fga_A 2fgf_A 1ev2_A 1cvs_A 1fq9_A* 1bff_A 2bfh_A Back     alignment and structure
>1qql_A Fibroblast growth factor 7/1 chimera; beta-trefoil, hormone/growth factor complex; 2.30A {Rattus norvegicus} SCOP: b.42.1.1 PDB: 1qqk_A Back     alignment and structure
>1nun_A Fibroblast growth factor-10; beta-trefoil fold, immunoglobulin-like domain, hormone/growth factor/membrane protein complex; HET: 15P; 2.90A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>1q1u_A FGF-12, fibrobast growth factor homologous factor 1, FGF12B; human, hormone/growth factor complex; 1.70A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>1ijt_A FGF4, fibroblast growth factor 4; B-trefoil fold, hormone/growth factor complex; 1.80A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>3ef2_A Agglutinin, lectin; beta-trefoil, calcium-binding, carbohydrate-binding, sugar-binding, sugar binding protein; HET: FUC GAL GLA; 1.80A {Marasmius oreades} PDB: 2iho_A* Back     alignment and structure
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1 Back     alignment and structure
>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo protein; 2.20A {Homo sapiens} Back     alignment and structure
>3p6i_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; HET: SO4; 1.32A {Synthetic} PDB: 3ogf_A Back     alignment and structure
>1ihk_A GLIA-activating factor; B-trefoil fold, hormone/growth factor complex; 2.20A {Homo sapiens} SCOP: b.42.1.1 PDB: 1g82_A* Back     alignment and structure
>3f1r_A FGF-20, fibroblast growth factor 20; beta-trefoil fold, polymorphism, secreted, hormone; 2.50A {Homo sapiens} Back     alignment and structure
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A* Back     alignment and structure
>2fdb_M FGF8B, fibroblast growth factor 8 isoform B; beta-trefoil fold, immunoglobulin fold, hormone/growth factor/transferase complex; 2.28A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>3kmv_A Alpha-L-arabinofuranosidase B; protein:carboydrate interactions, carbohydrate-binding modul trefoil fold, CBM42, sugar binding protein; 1.80A {Clostridium thermocellum} Back     alignment and structure
>1jlx_A Agglutinin, amaranthin, ACA; complex (lectin/saccharide), T-disaccharide homodimer, bivalent, lectin; HET: GAL A2G; 2.20A {Amaranthus caudatus} SCOP: b.42.3.1 b.42.3.1 PDB: 1jly_A Back     alignment and structure
>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo protein; 2.20A {Homo sapiens} Back     alignment and structure
>3hbw_A Fibroblast growth factor 13; beta-trefoil fold, alternative splicing, polymorphism, hormone; 1.90A {Homo sapiens} PDB: 4dck_C Back     alignment and structure
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} SCOP: b.42.6.0 Back     alignment and structure
>2p39_A Fibroblast growth factor 23; atypical beta-trefoil fold, signaling protein; HET: SCR; 1.50A {Homo sapiens} Back     alignment and structure
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic} Back     alignment and structure
>3phz_A Ricin B-related lectin; beta trefoil, saccharide binding lectin, 2,6-sialyl-lactosam sugar binding protein; HET: NAG GAL SIA; 1.70A {Polyporus squamosus} Back     alignment and structure
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A Back     alignment and structure
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus} Back     alignment and structure
>3p6i_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; HET: SO4; 1.32A {Synthetic} PDB: 3ogf_A Back     alignment and structure
>1jlx_A Agglutinin, amaranthin, ACA; complex (lectin/saccharide), T-disaccharide homodimer, bivalent, lectin; HET: GAL A2G; 2.20A {Amaranthus caudatus} SCOP: b.42.3.1 b.42.3.1 PDB: 1jly_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 307
d1hcda_118 b.42.5.2 (A:) Histidine-rich actin-binding protein 3e-24
d1dfca1133 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens 5e-14
d1dfca3123 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens 5e-09
d1dfca3123 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens 3e-04
>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]} Length = 118 Back     information, alignment and structure

class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Histidine-rich actin-binding protein (hisactophilin)
domain: Histidine-rich actin-binding protein (hisactophilin)
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 92.6 bits (230), Expect = 3e-24
 Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 15/121 (12%)

Query: 10  VRLRSHHDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKSCYGKYLTASNQ 69
              +SHH  FL AE +  +V            + VE+  G    + LK+  GKYL+  + 
Sbjct: 4   RAFKSHHGHFLSAEGE--AVKTHHGHHDHHTHFHVENHGGK---VALKTHCGKYLSIGDH 58

Query: 70  PFLLGMTGRKVIQSVPGRLDSSVEWEPVREANQVKLKTRYGHFLRA-NGGLPPWRNSVTH 128
             +                     +       +V +K  + H++ A + G    +    H
Sbjct: 59  KQVYLSHHLH---------GDHSLFHLEHHGGKVSIKGHHHHYISADHHGHVSTKEHHDH 109

Query: 129 D 129
           D
Sbjct: 110 D 110
>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 133 Back     information, alignment and structure
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 123 Back     information, alignment and structure
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 123 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query307
d1hcda_118 Histidine-rich actin-binding protein (hisactophili 99.34
d1dfca1133 Fascin {Human (Homo sapiens) [TaxId: 9606]} 99.15
d1dfca3123 Fascin {Human (Homo sapiens) [TaxId: 9606]} 98.87
d1hcda_118 Histidine-rich actin-binding protein (hisactophili 98.17
d1dfca3123 Fascin {Human (Homo sapiens) [TaxId: 9606]} 98.16
d1dfca1133 Fascin {Human (Homo sapiens) [TaxId: 9606]} 98.04
d1t9fa_178 Hypothetical protein R12E2.13 (1D10) {Caenorhabdit 97.2
d1upsa2131 GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi 96.93
d1dfca4111 Fascin {Human (Homo sapiens) [TaxId: 9606]} 96.52
d1dfca4111 Fascin {Human (Homo sapiens) [TaxId: 9606]} 96.38
d1nuna_139 Fibroblast growth factor-10, FGF10 {Human (Homo sa 95.94
d1qqka_132 Keratinocyte growth factor, FGF7 {Rat (Rattus norv 95.66
d1q1ua_138 Fibrobast growth factor homologous factor 1 (FHF1b 95.07
d1dfca2119 Fascin {Human (Homo sapiens) [TaxId: 9606]} 94.01
d1jlxa1153 Agglutinin {Love-lies-bleeding (Amaranthus caudatu 93.55
d1n4ka2200 IP3 receptor type 1 binding core, domain 1 {Mouse 93.48
d1ijta_128 Fibroblast growth factor 4 (FGF4) {Human (Homo sap 93.2
d1ihka_157 Fibroblast growth factor 9, FGF9 {Human (Homo sapi 92.95
d1bfga_126 Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 960 92.88
d1rg8a_141 Acidic FGF (FGF1) {Human (Homo sapiens) [TaxId: 96 92.01
d1pwaa_136 Fibroblast growth factor-19 (FGF19) {Human (Homo s 90.45
d1t9fa_178 Hypothetical protein R12E2.13 (1D10) {Caenorhabdit 90.1
d2fdbm1147 Fibroblast growth factor 8, FGF8 {Human (Homo sapi 89.53
d2ihoa1154 Agglutinin MOA, N-terminal domain {Fairy-ring mush 88.72
d1bfga_126 Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 960 86.62
d1pwaa_136 Fibroblast growth factor-19 (FGF19) {Human (Homo s 82.88
>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Histidine-rich actin-binding protein (hisactophilin)
domain: Histidine-rich actin-binding protein (hisactophilin)
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.34  E-value=6.6e-13  Score=107.74  Aligned_cols=94  Identities=22%  Similarity=0.346  Sum_probs=72.3

Q ss_pred             EEEeecCCceEeeecCCCeEEecCCCCCCCCeeEEEeecCCCCEEEecccCCCccccCCCCCCCCCCcceEEeeCCCCCC
Q 021823           10 VRLRSHHDKFLIAEEDEESVTQDRNGSSKSAKWTVESVPGSQNIIRLKSCYGKYLTASNQPFLLGMTGRKVIQSVPGRLD   89 (307)
Q Consensus        10 VRLRs~~g~YL~ADeDg~~Vs~~~~~~s~na~W~Ve~~~~~~~~vlL~sAYGRYL~as~~~~~~G~~G~~v~Q~~~~~~d   89 (307)
                      |.|||+|||||.||++  +|.+.+...+.++.|+||..   +..|.||+++|+||++.+.       | .+ +...+...
T Consensus         4 ~~lrs~~gkyL~a~~~--~v~~~~~~~~~~~~F~ve~~---~g~iaLks~~GkYlsa~~~-------g-~l-~~~~~~~~   69 (118)
T d1hcda_           4 RAFKSHHGHFLSAEGE--AVKTHHGHHDHHTHFHVENH---GGKVALKTHCGKYLSIGDH-------K-QV-YLSHHLHG   69 (118)
T ss_dssp             SEEESSTTCEEEEETT--EEEEECSCSSCCCCCEEEEE---TTEEEEESSSSCEEEEEET-------T-EE-EEECCCSS
T ss_pred             EEeEcCCCcEEeecCC--ceEeeCCCCCCCceEEEEcC---CCEEEEEeCCCCEEEecCC-------C-cE-EEeccCCC
Confidence            6899999999999977  48888888889999999973   4789999999999998653       2 22 22222222


Q ss_pred             CCcceeEEeeCCEEEEecCCcceeccCC
Q 021823           90 SSVEWEPVREANQVKLKTRYGHFLRANG  117 (307)
Q Consensus        90 ~~v~W~~v~~g~~V~Lr~~~gr~LRANg  117 (307)
                      ..-.|+.+..++.|.|+..+|+||.|..
T Consensus        70 ~~E~F~ie~~~g~valrs~nGkylsa~~   97 (118)
T d1hcda_          70 DHSLFHLEHHGGKVSIKGHHHHYISADH   97 (118)
T ss_dssp             SSSSBEEEEETTEEEEECSTTCEEEECG
T ss_pred             CceEEEEEECCCEEEEEeCCCCEEEEcC
Confidence            2334556677889999999999999953
>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1upsa2 b.42.2.3 (A:290-420) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure
>d1dfca4 b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dfca4 b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nuna_ b.42.1.1 (A:) Fibroblast growth factor-10, FGF10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqka_ b.42.1.1 (A:) Keratinocyte growth factor, FGF7 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1q1ua_ b.42.1.1 (A:) Fibrobast growth factor homologous factor 1 (FHF1b, FGF12b) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dfca2 b.42.5.1 (A:1141-1259) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jlxa1 b.42.3.1 (A:1-153) Agglutinin {Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]} Back     information, alignment and structure
>d1n4ka2 b.42.6.1 (A:236-435) IP3 receptor type 1 binding core, domain 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ijta_ b.42.1.1 (A:) Fibroblast growth factor 4 (FGF4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihka_ b.42.1.1 (A:) Fibroblast growth factor 9, FGF9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bfga_ b.42.1.1 (A:) Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rg8a_ b.42.1.1 (A:) Acidic FGF (FGF1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pwaa_ b.42.1.1 (A:) Fibroblast growth factor-19 (FGF19) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d2fdbm1 b.42.1.1 (M:34-180) Fibroblast growth factor 8, FGF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ihoa1 b.42.2.1 (A:2-155) Agglutinin MOA, N-terminal domain {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]} Back     information, alignment and structure
>d1bfga_ b.42.1.1 (A:) Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pwaa_ b.42.1.1 (A:) Fibroblast growth factor-19 (FGF19) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure