Citrus Sinensis ID: 021824

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
Protein Sequence
MRGNETEKNMEESLLIPKESLSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVWYVDIDCI
Secondary Structure (PSIPRED)
cccccccccHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEHEEEEEHHHHHcc
Coil and Loop (DISEMBL)
mrgneteknmeesllipkeslssssttwgVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQaygaqqyqrigTQTYTAIFCLFLVCFPLSFLWIYAGKLLVligqdpqishEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIpicwslvyksglgnlGGALAIGISNWLNVTFLAIYMKFSTacaesrvpiSMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSgllpnpqletSVLSVWYVDIDCI
Flexible Loop (DISEMBL)
mrgneteknmeesllipkeslssssTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVWYVDIDCI
Low Complexity Region (SEG)
MRGNETEKNMEESLLIPKESLSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSglgnlggalaigiSNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVWYVDIDCI
Disordered region (IsUnstruct)
**************************TWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVWYVDIDC*
Disordered Region (DISOPRED)
**************************TWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVWYVDIDCI
Disordered Region (DISEMBL)
************SLLIPK*********WGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVWYVDIDCI
Disordered Region (DISPRO)
********************LSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVWYVDIDCI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRGNETEKNMEESLLIPKESLSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVWYVDIDCI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	307	2.2.26 [Sep-21-2011]
Q9SIA4	476	MATE efflux family protei	no	no	0.944	0.609	0.517	1e-81
Q8GXM8	476	MATE efflux family protei	no	no	0.944	0.609	0.486	2e-78
Q9SIA5	476	MATE efflux family protei	no	no	0.944	0.609	0.489	4e-78
Q9SIA1	477	MATE efflux family protei	no	no	0.944	0.607	0.484	6e-75
Q9SIA3	476	MATE efflux family protei	no	no	0.944	0.609	0.472	3e-74
Q8RWF5	483	MATE efflux family protei	no	no	0.944	0.600	0.477	7e-73
Q9LUH2	477	MATE efflux family protei	no	no	0.941	0.605	0.323	4e-45
Q9LUH3	469	MATE efflux family protei	no	no	0.866	0.567	0.349	2e-44
Q9LYT3	507	Protein TRANSPARENT TESTA	no	no	0.846	0.512	0.343	4e-38
Q3V050	573	Multidrug and toxin extru	yes	no	0.859	0.460	0.317	1e-29

>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1

 Score =  303 bits (775), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 151/292 (51%), Positives = 205/292 (70%), Gaps = 2/292 (0%)

Query: 10  MEESLLIPKESLSSSSTTW--GVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLG 67
           MEE  L+  E L     TW  G ++ E+KK   +AAPM AVT++QYLL V+S+M+ GH G
Sbjct: 1   MEEPFLLQDEHLVPCKDTWKSGQVTVELKKVSSLAAPMAAVTIAQYLLPVISVMVAGHNG 60

Query: 68  QLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVC 127
           +L LS  A+A S  +V+GFS+L G+A ALETLCGQAYGA+QY++IGT TY+A      +C
Sbjct: 61  ELQLSGVALATSFTNVSGFSILFGLAGALETLCGQAYGAKQYEKIGTYTYSATASNIPIC 120

Query: 128 FPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPM 187
             +S LWIY  KLL+ +GQDP IS   G + +WL+PALFA+A   PL R+  +Q L++P+
Sbjct: 121 VLISVLWIYIEKLLISLGQDPDISRVAGSYALWLIPALFAHAFFIPLTRFLLAQGLVLPL 180

Query: 188 FLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVP 247
              +   L  HIP+CW+ VY  GLG+ G A+AI +S W  V  L+ Y+++S++C ++RV 
Sbjct: 181 LYCTLTTLLFHIPVCWAFVYAFGLGSNGAAMAISVSFWFYVVILSCYVRYSSSCDKTRVF 240

Query: 248 ISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSV 299
           +S +    I +FFHF +PSA M+CLEWW FELLIL SGLLPNP+LETSVLS+
Sbjct: 241 VSSDFVSCIKQFFHFGVPSAAMVCLEWWLFELLILCSGLLPNPKLETSVLSI 292

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1

 Score =  292 bits (748), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 142/292 (48%), Positives = 203/292 (69%), Gaps = 2/292 (0%)

Query: 10  MEESLLIPKESLSSSSTTW--GVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLG 67
           MEE  L   E L S  +TW  G ++ E+KK   +AAPM  VT++QYLL V+S+M+ GH+G
Sbjct: 1   MEEPFLPRDEQLVSCKSTWQSGQVTVELKKVSRLAAPMATVTIAQYLLPVISVMVAGHIG 60

Query: 68  QLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVC 127
           +L L+  A+A S  +V+GFS++ G+  ALETLCGQAYGA+QY++IGT TY+A+     +C
Sbjct: 61  ELELAGVALATSFTNVSGFSIMFGLVGALETLCGQAYGAEQYEKIGTYTYSAMASNIPIC 120

Query: 128 FPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPM 187
           F +S LWIY  KLL+ +GQ+P IS   G + +WL+PALFA+A   PL R+  +Q L+I +
Sbjct: 121 FIISILWIYIEKLLITLGQEPDISRVAGSYSLWLVPALFAHAIFLPLTRFLLAQGLVISL 180

Query: 188 FLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVP 247
             S+   L  HI +CW+LV+  GLG+ G A+AI +S W     L+ +++F ++C ++R  
Sbjct: 181 LYSAMTTLLFHIAVCWTLVFALGLGSNGAAIAISLSFWFYAVILSCHVRFFSSCEKTRGF 240

Query: 248 ISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSV 299
           +S +    I ++F + +PSA +ICLEWW FELLIL SGLLPNP+LETSVLS+
Sbjct: 241 VSNDFMSSIKQYFQYGVPSAGLICLEWWLFELLILCSGLLPNPKLETSVLSI 292

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1

 Score =  291 bits (745), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 143/292 (48%), Positives = 199/292 (68%), Gaps = 2/292 (0%)

Query: 10  MEESLLIPKESLSSSSTTWGV--LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLG 67
           MEE  L+  E L  S  TW    L+ E+K+   +AAPM  VT++QYLL V+S+M+ GH G
Sbjct: 1   MEEPFLLRDELLVPSQVTWHTNPLTVELKRVSRLAAPMATVTIAQYLLPVISVMVAGHNG 60

Query: 68  QLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVC 127
           +L LS  A+A S  +VTGFS++ G+  ALETLCGQAYGA+QY++IGT  Y+AI     +C
Sbjct: 61  ELQLSGVALANSFTNVTGFSIMCGLVGALETLCGQAYGAKQYEKIGTYAYSAIASNIPIC 120

Query: 128 FPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPM 187
           F +S LW+Y  K+L+ +GQDP+IS   G +  WL+PALF  A + PL R+  +Q L+IP+
Sbjct: 121 FLISILWLYIEKILISLGQDPEISRIAGSYAFWLIPALFGQAIVIPLSRFLLTQGLVIPL 180

Query: 188 FLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVP 247
             ++   L  H+ +CW+LV+  GLG  G A+A  +S W     L+ Y++FS++C ++R  
Sbjct: 181 LFTAVTTLLFHVLVCWTLVFLFGLGCNGPAMATSVSFWFYAVILSCYVRFSSSCEKTRGF 240

Query: 248 ISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSV 299
           +S +    I +FF + IPSA MICLEWW FE+LIL SGLLPNP+LETSVLS+
Sbjct: 241 VSRDFVSSIKQFFQYGIPSAAMICLEWWLFEILILCSGLLPNPKLETSVLSI 292

Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2

 Score =  281 bits (718), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 143/295 (48%), Positives = 196/295 (66%), Gaps = 5/295 (1%)

Query: 10  MEESLLIPKE-----SLSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVG 64
           ME+ LL+  +     +L S+ T W   + E+K    +AAPM  VT+SQYLL V+S+M+ G
Sbjct: 1   MEDPLLLGDDQLITRNLKSTPTWWMNFTAELKNVSSMAAPMATVTVSQYLLPVISVMVAG 60

Query: 65  HLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLF 124
           H G+L LS   +A + A+V+GF ++ G+  ALETLCGQAYGA+QY +IGT T++AI    
Sbjct: 61  HCGELQLSGVTLATAFANVSGFGIMYGLVGALETLCGQAYGAKQYTKIGTYTFSAIVSNV 120

Query: 125 LVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLI 184
            +   +S LW Y  KL V +GQDP IS   G + + L+PAL A A  QPL R+ Q+Q L+
Sbjct: 121 PIVVLISILWFYMDKLFVSLGQDPDISKVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLV 180

Query: 185 IPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAES 244
           +P+   +   L  HIP+C  LVY  GLG+ G ALAIG+S W NV  LA+Y++FS+AC ++
Sbjct: 181 LPLLYCAITTLLFHIPVCLILVYAFGLGSNGAALAIGLSYWFNVLILALYVRFSSACEKT 240

Query: 245 RVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSV 299
           R  +S +    + +FF + IPSA M  +EW  FELLIL SGLLPNP+LETSVLS+
Sbjct: 241 RGFVSDDFVLSVKQFFQYGIPSAAMTTIEWSLFELLILSSGLLPNPKLETSVLSI 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2

 Score =  278 bits (712), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 138/292 (47%), Positives = 195/292 (66%), Gaps = 2/292 (0%)

Query: 10  MEESLLIPKESLSSSSTTW--GVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLG 67
           MEE  L   E +     TW  G L+ E+KK   +A PM  VT++QYLL V+S+M+ GH G
Sbjct: 1   MEEPFLPQDEQIVPCKATWKSGQLNVELKKVSRLAVPMATVTIAQYLLPVISVMVAGHNG 60

Query: 68  QLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVC 127
           +L LS  A+A S  +V+GFS++ G+  +LETL GQAYGA+QY+++GT TY+AI     +C
Sbjct: 61  ELQLSGVALATSFTNVSGFSIMFGLVGSLETLSGQAYGAKQYEKMGTYTYSAISSNIPIC 120

Query: 128 FPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPM 187
             +S LWIY  KLL+ +GQDP IS   G + + L+P LFA+A + PL R+  +Q L++P+
Sbjct: 121 VLISILWIYMEKLLISLGQDPDISRVAGSYALRLIPTLFAHAIVLPLTRFLLAQGLVLPL 180

Query: 188 FLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVP 247
              +   L  HI +CW+LV   GLG+ G ALAI +S W     L+ Y++FS++C ++R  
Sbjct: 181 LYFALTTLLFHIAVCWTLVSALGLGSNGAALAISVSFWFFAMTLSCYVRFSSSCEKTRRF 240

Query: 248 ISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSV 299
           +S +    + +FF + +PSA M+CLEWW FELLIL SGLL NP+LETSVLS+
Sbjct: 241 VSQDFLSSVKQFFRYGVPSAAMLCLEWWLFELLILCSGLLQNPKLETSVLSI 292

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1

 Score =  274 bits (700), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 141/295 (47%), Positives = 194/295 (65%), Gaps = 5/295 (1%)

Query: 10  MEESLLIPKESLSSSS----TTWGV-LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVG 64
           ME+ LL+    + + S     TW +  + E+K    +A PM  VT++QYLL V+S+M+ G
Sbjct: 1   MEDPLLLGDNQIITGSLKPTPTWRMNFTAELKNLSRMALPMATVTVAQYLLPVISVMVAG 60

Query: 65  HLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLF 124
           H  +L LS  A+A S  +V+GFSV+ G+A ALETLCGQAYGA+QY +IGT T++AI    
Sbjct: 61  HRSELQLSGVALATSFTNVSGFSVMFGLAGALETLCGQAYGAKQYAKIGTYTFSAIVSNV 120

Query: 125 LVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLI 184
            +   +S LW Y  KL V +GQDP IS   G + + L+PAL A A  QPL R+ Q+Q L+
Sbjct: 121 PIVVLISILWFYMDKLFVSLGQDPDISKVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLV 180

Query: 185 IPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAES 244
           +P+   +   L  HIP+C  LVY  GLG+ G ALAIG+S W NV  LA+Y++FS++C ++
Sbjct: 181 LPLLYCAITTLLFHIPVCLILVYAFGLGSNGAALAIGLSYWFNVLILALYVRFSSSCEKT 240

Query: 245 RVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSV 299
           R  +S +    + +FF + IPSA M  +EW  FE LIL SGLLPNP+LETSVLS+
Sbjct: 241 RGFVSDDFVLSVKQFFQYGIPSAAMTTIEWSLFEFLILSSGLLPNPKLETSVLSI 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1

 Score =  182 bits (461), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 168/297 (56%), Gaps = 8/297 (2%)

Query: 3   GNETEKNMEESLLIPKESLSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMM 62
           G E E+         + S SS+     +   E K Q   + PM+   +  Y + + S+M 
Sbjct: 16  GGEDERG--------RRSRSSTLVQKVIDVEEAKAQMIYSLPMILTNVFYYCIPITSVMF 67

Query: 63  VGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFC 122
             HLGQL L+   +A S A+V+GF+ ++G++ +LETLCGQ +GA++Y+ +G    ++   
Sbjct: 68  ASHLGQLELAGATLANSWATVSGFAFMVGLSGSLETLCGQGFGAKRYRMLGVHLQSSCIV 127

Query: 123 LFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQS 182
             +    ++  W +   +  L+ QDP IS +   +M +  P L AY  +Q ++R+ Q+QS
Sbjct: 128 SLVFSILITIFWFFTESIFGLLRQDPSISKQAALYMKYQAPGLLAYGFLQNILRFCQTQS 187

Query: 183 LIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACA 242
           +I P+ + S   L ++I   + LVY +GLG +G  +A  IS W+    L  Y+  S    
Sbjct: 188 IIAPLVIFSFVPLVINIATAYVLVYVAGLGFIGAPIATSISLWIAFLSLGTYVMCSEKFK 247

Query: 243 ESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSV 299
           E+    S+E F+ I      ++PSA M+CLE+W+FE+L+ ++G++PNP++ TS++++
Sbjct: 248 ETWTGFSLESFRYIVINLTLSLPSAAMVCLEYWAFEILVFLAGVMPNPEINTSLVAI 304

Required for protection of the roots from inhibitory compounds. When expressed in an heterologous system, confers resistance to tetramethylammonium chloride.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1

 Score =  179 bits (454), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/266 (34%), Positives = 156/266 (58%)

Query: 34  EVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMA 93
           E K Q   + PM+   L  Y + + S+M    LGQL L+   +A S A+VTGF+ + G++
Sbjct: 31  EAKTQIIYSLPMIFTNLFYYCIPLTSVMFASQLGQLELAGATLANSWATVTGFAFMTGLS 90

Query: 94  SALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHE 153
            ALETLCGQ +GA+ Y+ +G    ++     +    ++ LW +   + +L+ QDP IS +
Sbjct: 91  GALETLCGQGFGAKSYRMLGIHLQSSCIVSLVFTILITILWFFTESVFLLLRQDPSISKQ 150

Query: 154 VGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGN 213
              +M +L P L AY  +Q ++R+ Q+Q ++ P+ L S   L ++I   ++LV+ +GLG 
Sbjct: 151 AALYMKYLAPGLLAYGFLQNILRFCQTQCIVTPLVLFSFLPLVINIGTTYALVHLAGLGF 210

Query: 214 LGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLE 273
           +G  +A  IS W+    L  Y+  S    E+    SME F  +      +IPSA M+CLE
Sbjct: 211 IGAPIATSISLWIAFVSLGFYVICSDKFKETWTGFSMESFHHVVLNLTLSIPSAAMVCLE 270

Query: 274 WWSFELLILMSGLLPNPQLETSVLSV 299
           +W+FE+L+ ++GL+ NP++ TS++++
Sbjct: 271 YWAFEILVFLAGLMRNPEITTSLVAI 296

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1

 Score =  158 bits (400), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 90/262 (34%), Positives = 146/262 (55%), Gaps = 2/262 (0%)

Query: 46  VAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYG 105
           + V++  Y+L  V++M  GHLG L L+  ++A        + ++LGMASA++T+CGQAYG
Sbjct: 63  IVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYG 122

Query: 106 AQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPAL 165
           A+QY  +G     A+         L+FL+ Y+G +L  +GQ   I+HE   F   ++P +
Sbjct: 123 ARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQI 182

Query: 166 FAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNW 225
           +A+A   P+ R+ Q+Q+++ P+   S     LH  + W +      G LG AL +  S W
Sbjct: 183 YAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWW 242

Query: 226 LNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSG 285
           L V    +Y+  S  C E+    S   F+GI  +F   + SAVM+CLE W  + L+++SG
Sbjct: 243 LLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVIISG 302

Query: 286 LLPNPQLETSVLSV--WYVDID 305
           LL NP +    +S+  +Y++ D
Sbjct: 303 LLSNPTISLDAISICMYYLNWD 324

May be involved in vacuolar transport of flavonoids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3V050|S47A2_MOUSE Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1

 Score =  130 bits (327), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/268 (31%), Positives = 145/268 (54%), Gaps = 4/268 (1%)

Query: 29  GVLSGEVKKQGY----IAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVT 84
           G LS +V+++      +A P+    L  +L+ +VS +  GHLG++ L +  +A+S+ +VT
Sbjct: 34  GALSPDVRREAAALVALAGPVFLAQLMIFLISIVSSIFCGHLGKVELDAVTLAVSVVNVT 93

Query: 85  GFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLI 144
           G SV  G+ASA +TL  Q++G +  +R+G      I  L L CFP   +++   +LL+L+
Sbjct: 94  GISVGTGLASACDTLMSQSFGGKNLKRVGVILQRGILILLLCCFPCWAIFLNTERLLLLL 153

Query: 145 GQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWS 204
            QDP ++     +++  +PAL A    Q   RY QSQ +I+P  +   AA  +++ +   
Sbjct: 154 RQDPDVARLAQVYVMICIPALPAAFLFQLQTRYLQSQGIIMPQVIVGIAANVVNVGMNAF 213

Query: 205 LVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAI 264
           L+Y   LG +G A A   S +     L +Y+ +      +    + E FQ    +   AI
Sbjct: 214 LLYALDLGVVGSAWANTTSQFFLSALLFLYVWWKRIHIHTWGGWTRECFQEWSSYTRLAI 273

Query: 265 PSAVMICLEWWSFELLILMSGLLPNPQL 292
           PS  M+C+EWW+FE+   ++GL+   +L
Sbjct: 274 PSMFMVCIEWWTFEIGTFLAGLVNVTEL 301

Solute transporter for tetraethylammonium (TEA), cimetidine, choline, procainamide, cimetidine, quinidine, guanidine, N-methylnicotinamide (NMN). Responsible for the secretion of cationic drugs across the brush border membranes.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
224108371	482	predicted protein [Populus trichocarpa]	0.967	0.616	0.699	1e-121
225424132	481	PREDICTED: MATE efflux family protein 5	0.934	0.596	0.715	1e-116
147787625	481	hypothetical protein VITISV_022104 [Viti	0.934	0.596	0.715	1e-116
255582915	476	TRANSPARENT TESTA 12 protein, putative [	0.947	0.611	0.726	1e-115
255582919	508	TRANSPARENT TESTA 12 protein, putative [	0.970	0.586	0.667	1e-114
357444623	495	Protein TRANSPARENT TESTA [Medicago trun	0.964	0.597	0.653	1e-114
449506364	485	PREDICTED: LOW QUALITY PROTEIN: MATE eff	0.960	0.608	0.656	1e-112
449434574	485	PREDICTED: MATE efflux family protein 7-	0.960	0.608	0.653	1e-112
297737740	443	unnamed protein product [Vitis vinifera]	0.830	0.575	0.780	1e-109
359472648	481	PREDICTED: MATE efflux family protein 5	0.944	0.602	0.702	1e-109

>gi|224108371|ref|XP_002314825.1| predicted protein [Populus trichocarpa] gi|222863865|gb|EEF00996.1| predicted protein [Populus trichocarpa]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/306 (69%), Positives = 255/306 (83%), Gaps = 9/306 (2%)

Query: 10  MEESLLIPKESLS--------SSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMM 61
           MEESLL P+E           + + TWGV   EVK+ GYIA PMVAV L+QY LQV+SMM
Sbjct: 1   MEESLL-PREVDEKGQGIIGPTPTPTWGVFIQEVKRLGYIAGPMVAVILTQYSLQVISMM 59

Query: 62  MVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIF 121
           MVGHLG+LALSS AMA+SL+ VTGFS+++GMASALETLCGQAYGA+QY+++GTQTYTAIF
Sbjct: 60  MVGHLGELALSSAAMALSLSGVTGFSLMMGMASALETLCGQAYGAKQYKKLGTQTYTAIF 119

Query: 122 CLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQ 181
           CL LVC PLS +WIY GK+L   GQDP ISHE GKF++WL+PALFAYAT+QPL+RYFQ+Q
Sbjct: 120 CLNLVCIPLSVIWIYMGKILHFTGQDPAISHEAGKFIVWLVPALFAYATLQPLVRYFQTQ 179

Query: 182 SLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTAC 241
           S I+PM +SSCA LC HIP+CW+LVYKSGL N+G A+A+GIS WLNV FL +Y+K+S+AC
Sbjct: 180 SFIMPMLISSCATLCFHIPLCWALVYKSGLKNVGSAVAMGISYWLNVIFLGLYIKYSSAC 239

Query: 242 AESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVWY 301
           A++RVPI  ELF G+GEFF FAIPSAVMICLEWWSFELLIL+SG LPNPQLETSVLSV  
Sbjct: 240 AKTRVPIYKELFYGVGEFFRFAIPSAVMICLEWWSFELLILLSGFLPNPQLETSVLSVCL 299

Query: 302 VDIDCI 307
           + I  +
Sbjct: 300 MTISTL 305

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424132|ref|XP_002280212.1| PREDICTED: MATE efflux family protein 5 [Vitis vinifera]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/299 (71%), Positives = 252/299 (84%), Gaps = 12/299 (4%)

Query: 1   MRGNETEKNMEESLLIPKESLSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSM 60
           ++GN  EK  EE L             W ++  EVK+ G +AAPMVAV LSQYL+QVVS+
Sbjct: 7   VKGNGGEKREEEGL------------RWVLVCEEVKRLGCLAAPMVAVVLSQYLVQVVSV 54

Query: 61  MMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAI 120
           MMVGHLG+LALSSTA+AISL+ V+GFS+LLGMASALETLCGQAYGA+QY ++GTQTYTAI
Sbjct: 55  MMVGHLGELALSSTAIAISLSGVSGFSLLLGMASALETLCGQAYGAKQYSKLGTQTYTAI 114

Query: 121 FCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQS 180
           F LFLVC PLS +WIY GKLL  +GQDP IS+E GKF +WL+PALFAYAT+QPL+RYFQ+
Sbjct: 115 FSLFLVCLPLSVIWIYMGKLLTFMGQDPLISYEAGKFTMWLVPALFAYATLQPLVRYFQT 174

Query: 181 QSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTA 240
           QSL +PM LSSCAALC H+P+CW LV+KSGLGNLG ALAI IS WLN  FL +YMK+S+A
Sbjct: 175 QSLTMPMLLSSCAALCFHMPLCWVLVFKSGLGNLGAALAISISYWLNAIFLVLYMKYSSA 234

Query: 241 CAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSV 299
           C ++RVP+SME+FQG+GEFF FAIPSAVMICLEWWSFELLIL+SGLLPNP+LETSVLSV
Sbjct: 235 CEKTRVPVSMEVFQGMGEFFRFAIPSAVMICLEWWSFELLILLSGLLPNPELETSVLSV 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787625|emb|CAN78227.1| hypothetical protein VITISV_022104 [Vitis vinifera]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/299 (71%), Positives = 252/299 (84%), Gaps = 12/299 (4%)

Query: 1   MRGNETEKNMEESLLIPKESLSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSM 60
           ++GN  EK  EE L             W ++  EVK+ G +AAPMVAV LSQYL+QVVS+
Sbjct: 7   VKGNGGEKREEEGL------------RWVLVCEEVKRLGCLAAPMVAVVLSQYLVQVVSV 54

Query: 61  MMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAI 120
           MMVGHLG+LALSSTA+AISL+ V+GFS+LLGMASALETLCGQAYGA+QY ++GTQTYTAI
Sbjct: 55  MMVGHLGELALSSTAIAISLSGVSGFSLLLGMASALETLCGQAYGAKQYSKLGTQTYTAI 114

Query: 121 FCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQS 180
           F LFLVC PLS +WIY GKLL  +GQDP IS+E GKF +WL+PALFAYAT+QPL+RYFQ+
Sbjct: 115 FSLFLVCLPLSVIWIYMGKLLTFMGQDPLISYEAGKFTMWLVPALFAYATLQPLVRYFQT 174

Query: 181 QSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTA 240
           QSL +PM LSSCAALC H+P+CW LV+KSGLGNLG ALAI IS WLN  FL +YMK+S+A
Sbjct: 175 QSLTMPMLLSSCAALCFHMPLCWVLVFKSGLGNLGAALAISISYWLNAIFLVLYMKYSSA 234

Query: 241 CAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSV 299
           C ++RVP+SME+FQG+GEFF FAIPSAVMICLEWWSFELLIL+SGLLPNP+LETSVLSV
Sbjct: 235 CEKTRVPVSMEVFQGMGEFFRFAIPSAVMICLEWWSFELLILLSGLLPNPELETSVLSV 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582915|ref|XP_002532229.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223528086|gb|EEF30160.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/293 (72%), Positives = 247/293 (84%), Gaps = 2/293 (0%)

Query: 7   EKNMEESLLIPKESLSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL 66
           +K MEESLL+  +S   ++ TW V + EVKK GYIA PMVAV LSQYLLQV+S+MMVGHL
Sbjct: 6   DKAMEESLLLKDDS--RTALTWPVFTQEVKKLGYIAGPMVAVILSQYLLQVISLMMVGHL 63

Query: 67  GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLV 126
           G+LALSSTA+A SLA VTGFS LLGMASALETLCGQAYGA+QY+++G QT TAIFCL LV
Sbjct: 64  GELALSSTAIATSLAGVTGFSFLLGMASALETLCGQAYGAKQYKKLGIQTQTAIFCLILV 123

Query: 127 CFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIP 186
           C PLS +W + GKLLV IGQDP ISHE GK+M+WL+P+LFAYA +QPL+RYFQ QSLI P
Sbjct: 124 CIPLSIIWTFMGKLLVSIGQDPAISHEAGKYMMWLVPSLFAYAALQPLVRYFQMQSLITP 183

Query: 187 MFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRV 246
           M LSSCA LC H+P+CW L + SGL NLG ALA+ IS WLNV FL +YM +S+ACA++R 
Sbjct: 184 MLLSSCATLCFHMPLCWVLTFHSGLENLGAALAMDISIWLNVIFLGLYMSYSSACAKTRA 243

Query: 247 PISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSV 299
           PIS+ELF GIGEFF FAI SAVMICLEWWSFELL+L+SGLLPNPQLETSVLSV
Sbjct: 244 PISVELFHGIGEFFRFAIFSAVMICLEWWSFELLVLLSGLLPNPQLETSVLSV 296

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582919|ref|XP_002532231.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223528088|gb|EEF30162.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/307 (66%), Positives = 242/307 (78%), Gaps = 9/307 (2%)

Query: 10  MEESLLIPKESL---------SSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSM 60
           MEESLL+  +           S ++ TW + + E+KKQGY+A PMVAV LSQYLLQV+S+
Sbjct: 1   MEESLLLKDDRYEKREDAGGSSGTALTWPIFTQEMKKQGYLAGPMVAVILSQYLLQVISL 60

Query: 61  MMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAI 120
           M+ GHLGQLALSSTA+AISLA VTGFSVL+G+ASALETL GQAYGA+QYQ++G QT TAI
Sbjct: 61  MIAGHLGQLALSSTAIAISLAGVTGFSVLMGLASALETLSGQAYGAKQYQKVGIQTQTAI 120

Query: 121 FCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQS 180
           FCL L   PLS LWI+ GK+LVLIGQDP ISHE GKF+ WL+P+LFAY  +Q L+RYFQ 
Sbjct: 121 FCLILASIPLSILWIFMGKILVLIGQDPAISHEAGKFLTWLVPSLFAYTAIQGLVRYFQM 180

Query: 181 QSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTA 240
           QSLI PM +SSCA LC HIP+CW L   SGL NLG ALA+ ISNWL V  L +YMK+S+A
Sbjct: 181 QSLITPMLISSCATLCFHIPVCWVLTLHSGLENLGAALAMDISNWLFVIILGLYMKYSSA 240

Query: 241 CAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVW 300
           C ++R PISMELF GIGEFF  AIPSAVM CLEWWSFEL++L+SGLLPNP+LETSVLS+ 
Sbjct: 241 CDQTRAPISMELFHGIGEFFRLAIPSAVMSCLEWWSFELVVLLSGLLPNPRLETSVLSIC 300

Query: 301 YVDIDCI 307
              I  I
Sbjct: 301 ITTISTI 307

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444623|ref|XP_003592589.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355481637|gb|AES62840.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|388490870|gb|AFK33501.1| unknown [Medicago truncatula]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/306 (65%), Positives = 243/306 (79%), Gaps = 10/306 (3%)

Query: 4   NETEKNMEESLLI----------PKESLSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQY 53
            E  + MEESLL            +E   +   +W +   E+K+  Y++ PMVAVT SQY
Sbjct: 2   GEERRVMEESLLSKHIDSKAENGDEEERKNREISWDIYRKELKRICYLSGPMVAVTSSQY 61

Query: 54  LLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIG 113
           LLQVVS+M+VGHLG+L LSS A+AIS A VTGFS L+GMAS LET CGQAYGA+QYQRIG
Sbjct: 62  LLQVVSIMIVGHLGELYLSSAALAISFAGVTGFSFLMGMASGLETTCGQAYGAKQYQRIG 121

Query: 114 TQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQP 173
            QTYT+IF L LVC PLSF+WI    +LV  GQDP I+HE G+F IWLLPALFAYA +QP
Sbjct: 122 IQTYTSIFSLILVCLPLSFIWINIESILVFTGQDPLIAHEAGRFTIWLLPALFAYAILQP 181

Query: 174 LIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAI 233
           L+RYFQ QSL+IPM LSSC  LC+HIP+CW+LV+K+GL N+GGA+A+ IS WLNV FL +
Sbjct: 182 LVRYFQIQSLLIPMLLSSCVTLCIHIPLCWALVFKTGLNNIGGAIAMSISIWLNVIFLGL 241

Query: 234 YMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLE 293
           YM++S++CA++R PISMELFQGI EFF FAIPSAVM+CLEWWS+EL++L+SGLLPNPQLE
Sbjct: 242 YMRYSSSCAKTRAPISMELFQGIWEFFRFAIPSAVMVCLEWWSYELIVLLSGLLPNPQLE 301

Query: 294 TSVLSV 299
           TSVLSV
Sbjct: 302 TSVLSV 307

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506364|ref|XP_004162729.1| PREDICTED: LOW QUALITY PROTEIN: MATE efflux family protein 7-like [Cucumis sativus]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/297 (65%), Positives = 247/297 (83%), Gaps = 2/297 (0%)

Query: 5   ETEKN--MEESLLIPKESLSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMM 62
           E  KN  MEESLL  ++  + SSTT  V   E+K+ G++AAP+V VT SQ++LQ+++MMM
Sbjct: 2   ENRKNCSMEESLLAKQKETNLSSTTTAVYLEEMKRVGFLAAPLVIVTFSQFMLQIITMMM 61

Query: 63  VGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFC 122
           VGHLG LALSSTA+A+S+++VTGFSVLLG++SALETLCGQAYGAQQ++++G QTYTAIFC
Sbjct: 62  VGHLGALALSSTAIAVSISAVTGFSVLLGLSSALETLCGQAYGAQQFEKVGVQTYTAIFC 121

Query: 123 LFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQS 182
           +FL+CFPLS +W + GKLL+ +GQDP ISHE GKF++WL+P LFA A +QPL+RYFQ+QS
Sbjct: 122 VFLICFPLSLIWXFLGKLLLFVGQDPLISHEAGKFIVWLIPGLFASAFLQPLVRYFQAQS 181

Query: 183 LIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACA 242
           L+IPM + SC  L  HIP+CW +VYK+GL NLGGAL++  S  LNV  LA+YMKFS  C 
Sbjct: 182 LVIPMVIFSCITLFFHIPLCWFMVYKTGLRNLGGALSMSFSYCLNVILLALYMKFSPKCE 241

Query: 243 ESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSV 299
           ++R  ISMELFQGI +FF  A+PSAVM+CLEWWSFEL+IL+SGLLPNP+LETSVLSV
Sbjct: 242 KTRGVISMELFQGIRDFFSLAVPSAVMVCLEWWSFELIILLSGLLPNPELETSVLSV 298

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434574|ref|XP_004135071.1| PREDICTED: MATE efflux family protein 7-like [Cucumis sativus]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/297 (65%), Positives = 247/297 (83%), Gaps = 2/297 (0%)

Query: 5   ETEKN--MEESLLIPKESLSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMM 62
           E  KN  MEESLL  ++  + SSTT  V   E+K+ G++AAP+V VT SQ++LQ+++MMM
Sbjct: 2   ENRKNCSMEESLLAKQKETNLSSTTTAVYLEEMKRVGFLAAPLVIVTFSQFMLQIITMMM 61

Query: 63  VGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFC 122
           VGHLG LALSSTA+A+S+++VTGFSVLLG++SALETLCGQAYGAQQ++++G QTYTAIFC
Sbjct: 62  VGHLGALALSSTAIAVSISAVTGFSVLLGLSSALETLCGQAYGAQQFEKVGVQTYTAIFC 121

Query: 123 LFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQS 182
           +FL+CFPLS +W++  KLL+ +GQDP ISHE GKF++WL+P LFA A +QPL+RYFQ+QS
Sbjct: 122 VFLICFPLSLIWLFLEKLLLFVGQDPLISHEAGKFIVWLIPGLFASAFLQPLVRYFQAQS 181

Query: 183 LIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACA 242
           L+IPM + SC  L  HIP+CW +VYK+GL NLGGAL++  S  LNV  LA+YMKFS  C 
Sbjct: 182 LVIPMVIFSCITLFFHIPLCWFMVYKTGLRNLGGALSMSFSYCLNVILLALYMKFSPKCE 241

Query: 243 ESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSV 299
           ++R  ISMELFQGI +FF  A+PSAVM+CLEWWSFEL+IL+SGLLPNP+LETSVLSV
Sbjct: 242 KTRGVISMELFQGIRDFFSLAVPSAVMVCLEWWSFELIILLSGLLPNPELETSVLSV 298

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737740|emb|CBI26941.3| unnamed protein product [Vitis vinifera]

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/255 (78%), Positives = 231/255 (90%)

Query: 45  MVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAY 104
           MVAV LSQYL+QVVS+MMVGHLG+LALSSTA+AISL+ V+GFS+LLGMASALETLCGQAY
Sbjct: 1   MVAVVLSQYLVQVVSVMMVGHLGELALSSTAIAISLSGVSGFSLLLGMASALETLCGQAY 60

Query: 105 GAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPA 164
           GA+QY ++GTQTYTAIF LFLVC PLS +WIY GKLL  +GQDP IS+E GKF +WL+PA
Sbjct: 61  GAKQYSKLGTQTYTAIFSLFLVCLPLSVIWIYMGKLLTFMGQDPLISYEAGKFTMWLVPA 120

Query: 165 LFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISN 224
           LFAYAT+QPL+RYFQ+QSL +PM LSSCAALC H+P+CW LV+KSGLGNLG ALAI IS 
Sbjct: 121 LFAYATLQPLVRYFQTQSLTMPMLLSSCAALCFHMPLCWVLVFKSGLGNLGAALAISISY 180

Query: 225 WLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMS 284
           WLN  FL +YMK+S+AC ++RVP+SME+FQG+GEFF FAIPSAVMICLEWWSFELLIL+S
Sbjct: 181 WLNAIFLVLYMKYSSACEKTRVPVSMEVFQGMGEFFRFAIPSAVMICLEWWSFELLILLS 240

Query: 285 GLLPNPQLETSVLSV 299
           GLLPNP+LETSVLSV
Sbjct: 241 GLLPNPELETSVLSV 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472648|ref|XP_002280189.2| PREDICTED: MATE efflux family protein 5 [Vitis vinifera]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/292 (70%), Positives = 243/292 (83%), Gaps = 2/292 (0%)

Query: 10  MEESLLIPKESLSSSST--TWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLG 67
           MEESLL+  +          W ++  EVK+ G +AAPMVAV LSQYLLQV+S+MMVGHLG
Sbjct: 1   MEESLLVKGKGGEKRGEGLRWVLVGEEVKRLGCLAAPMVAVILSQYLLQVISLMMVGHLG 60

Query: 68  QLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVC 127
           +LALSSTA+AISL+ VTGFS LLGMASALETLCGQAYGA+QY ++GTQTYTAI  L LVC
Sbjct: 61  ELALSSTAIAISLSGVTGFSFLLGMASALETLCGQAYGAEQYHKLGTQTYTAIVSLLLVC 120

Query: 128 FPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPM 187
            PL+ +W+Y  KLL  IGQDP ISHE G+F IWL+PALF YAT+Q L+RY Q+QSLI+P+
Sbjct: 121 LPLAVIWLYMSKLLTFIGQDPVISHEAGQFSIWLVPALFGYATLQALVRYLQTQSLIMPL 180

Query: 188 FLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVP 247
            L+SCA L  HIP+CW+LV+KSGLG+LGGALAIGIS WLNV FL +Y+K+S AC ++RVP
Sbjct: 181 LLTSCAILGFHIPLCWALVFKSGLGSLGGALAIGISYWLNVIFLGLYIKYSPACEKTRVP 240

Query: 248 ISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSV 299
           +SME+  GIGEFF FAIPSAVMICLEWWSFELLIL+SGLLPNP+LE SVLSV
Sbjct: 241 VSMEILGGIGEFFRFAIPSAVMICLEWWSFELLILLSGLLPNPELEASVLSV 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
TAIR|locus:2026311	485	AT1G71140 "AT1G71140" [Arabido	0.866	0.548	0.627	1.3e-91
TAIR|locus:2037858	481	AT1G15170 "AT1G15170" [Arabido	0.944	0.602	0.548	4e-90
TAIR|locus:2037848	487	AT1G15160 "AT1G15160" [Arabido	0.944	0.595	0.537	8.6e-88
TAIR|locus:2037868	482	AT1G15180 "AT1G15180" [Arabido	0.954	0.607	0.536	1.8e-87
TAIR|locus:2037723	487	AT1G15150 "AT1G15150" [Arabido	0.889	0.560	0.542	4.3e-86
TAIR|locus:2050180	476	AT2G04050 "AT2G04050" [Arabido	0.944	0.609	0.493	3.9e-76
TAIR|locus:2033334	482	AT1G66760 "AT1G66760" [Arabido	0.951	0.605	0.484	3.1e-74
TAIR|locus:2010926	502	AT1G64820 [Arabidopsis thalian	0.928	0.567	0.503	5.1e-74
TAIR|locus:2033309	485	AT1G66780 "AT1G66780" [Arabido	0.905	0.573	0.510	1.2e-72
TAIR|locus:2050190	476	DTX1 "AT2G04040" [Arabidopsis	0.944	0.609	0.469	5.3e-72

TAIR|locus:2026311 AT1G71140 "AT1G71140" [Arabidopsis thaliana (taxid:3702)]

 Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
 Identities = 167/266 (62%), Positives = 207/266 (77%)

Query:    34 EVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMA 93
             E KK  YIA PM+AV  S Y+LQV+S+MMVGHLG+L LSSTA+A+S  SVTGFSV+ G+A
Sbjct:    26 ETKKLSYIAGPMIAVNSSMYVLQVISIMMVGHLGELFLSSTAIAVSFCSVTGFSVVFGLA 85

Query:    94 SALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHE 153
             SALETLCGQA GA+QY+++G  TYT I  LFLVC PLS LW Y G +L LIGQD  ++ E
Sbjct:    86 SALETLCGQANGAKQYEKLGVHTYTGIVSLFLVCIPLSLLWTYIGDILSLIGQDAMVAQE 145

Query:   154 VGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSXXXX 213
              GKF  WL+PALF YAT+QPL+R+FQ+QSLI+P+ +SS ++LC+HI +CWSLV+K     
Sbjct:   146 AGKFATWLIPALFGYATLQPLVRFFQAQSLILPLVMSSVSSLCIHIVLCWSLVFKFGLGS 205

Query:   214 XXXXXXXXXSNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLE 273
                      S WLNVT L +YM FS++C++SR  ISM LF+G+GEFF F IPSA MICLE
Sbjct:   206 LGAAIAIGVSYWLNVTVLGLYMTFSSSCSKSRATISMSLFEGMGEFFRFGIPSASMICLE 265

Query:   274 WWSFELLILMSGLLPNPQLETSVLSV 299
             WWSFE L+L+SG+LPNP+LE SVLSV
Sbjct:   266 WWSFEFLVLLSGILPNPKLEASVLSV 291

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)]

 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 163/297 (54%), Positives = 221/297 (74%)

Query:     8 KNMEESLLIPKESLSSSSTTW-----GVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMM 62
             ++ ++ LL+P E + +   TW     G  + E+K+  + AAPM AV ++Q++LQ+VSMMM
Sbjct:     5 ESTKDRLLLPVERVEN--VTWSDLRDGSFTVELKRLIFFAAPMAAVVIAQFMLQIVSMMM 62

Query:    63 VGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFC 122
             VGHLG L+L+S ++A S  +VTGFS ++G++ AL+TL GQAYGA+ Y+++G QTYTA+FC
Sbjct:    63 VGHLGNLSLASASLASSFCNVTGFSFIIGLSCALDTLSGQAYGAKLYRKLGVQTYTAMFC 122

Query:   123 LFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQS 182
             L LVC PLS +W    KLL+++GQDP I+HE GK+  WL+P LFAYA +QPL RYFQ+QS
Sbjct:   123 LALVCLPLSLIWFNMEKLLLILGQDPSIAHEAGKYATWLIPGLFAYAVLQPLTRYFQNQS 182

Query:   183 LIIPMFLSSCAALCLHIPICWSLVYKSXXXXXXXXXXXXXSNWLNVTFLAIYMKFSTACA 242
             LI P+ ++S    C+H+P+CW LVY S             SNWL   FL  +M +S+AC+
Sbjct:   183 LITPLLITSYVVFCIHVPLCWFLVYNSGLGNLGGALAISLSNWLYAIFLGSFMYYSSACS 242

Query:   243 ESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSV 299
             E+R P+SME+F GIGEFF +A+PSA MICLEWWS+EL+IL+SGLLPNPQLETSVLSV
Sbjct:   243 ETRAPLSMEIFDGIGEFFKYALPSAAMICLEWWSYELIILLSGLLPNPQLETSVLSV 299

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2037848 AT1G15160 "AT1G15160" [Arabidopsis thaliana (taxid:3702)]

 Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
 Identities = 159/296 (53%), Positives = 216/296 (72%)

Query:    10 MEESLLIPKESLSS-SSTTW-----GVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMV 63
             ME++    K+ +      TW     G  + E+KK    AAPM AV ++Q +LQ+++M++V
Sbjct:     1 MEDAESTTKDPVDRVEKVTWRDLQDGSFTAELKKLICFAAPMAAVVITQSMLQIITMVIV 60

Query:    64 GHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCL 123
             GHLG+L+L+S + AIS  +VTGFS ++G++ AL+TL GQAYGA+ Y+++G Q YTA+FCL
Sbjct:    61 GHLGRLSLASASFAISFCNVTGFSFIMGLSCALDTLSGQAYGAKLYRKLGVQAYTAMFCL 120

Query:   124 FLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSL 183
              LVC PLS LW   GKLLV++GQDP I+HE G+F  WL+P LFAYA +QPL RYF++QSL
Sbjct:   121 TLVCLPLSLLWFNMGKLLVILGQDPSIAHEAGRFAAWLIPGLFAYAVLQPLTRYFKNQSL 180

Query:   184 IIPMFLSSCAALCLHIPICWSLVYKSXXXXXXXXXXXXXSNWLNVTFLAIYMKFSTACAE 243
             I P+ ++SC   CLH+P+CW LVYKS             S WL   FL  +M FS+AC+E
Sbjct:   181 ITPLLITSCVVFCLHVPLCWLLVYKSGLDHIGGALALSLSYWLYAIFLGSFMYFSSACSE 240

Query:   244 SRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSV 299
             +R P++ME+F+G+ EF  +A+PSA M+CLEWWS+EL+IL+SGLLPNPQLETSVLSV
Sbjct:   241 TRAPLTMEIFEGVREFIKYALPSAAMLCLEWWSYELIILLSGLLPNPQLETSVLSV 296

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2037868 AT1G15180 "AT1G15180" [Arabidopsis thaliana (taxid:3702)]

 Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
 Identities = 161/300 (53%), Positives = 218/300 (72%)

Query:     5 ETEKNMEESLLIPKESLSSSSTTW-----GVLSGEVKKQGYIAAPMVAVTLSQYLLQVVS 59
             + E   + SLL+P E + +   TW     G+ + E+K+    AAPM AV ++Q++LQ++S
Sbjct:     3 DAESTSKTSLLLPVERVEN--VTWRDLRDGLFTAELKRLICFAAPMAAVVIAQFMLQIIS 60

Query:    60 MMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTA 119
             M+MVGHLG L+L+S ++A S  +VTGFS ++G++ AL+TL GQAYGA+ Y+++G QTYTA
Sbjct:    61 MVMVGHLGNLSLASASLASSFCNVTGFSFIVGLSCALDTLSGQAYGAKLYRKVGVQTYTA 120

Query:   120 IFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQ 179
             +FCL LVC PL+ +W+    LLV +GQDP I+HE G++   L+P LFAYA +QPL RYFQ
Sbjct:   121 MFCLALVCLPLTLIWLNMETLLVFLGQDPSIAHEAGRYAACLIPGLFAYAVLQPLTRYFQ 180

Query:   180 SQSLIIPMFLSSCAALCLHIPICWSLVYKSXXXXXXXXXXXXXSNWLNVTFLAIYMKFST 239
             +QS+I P+ ++SC   CLH+P+CW LVYKS             SN L    L   M FS+
Sbjct:   181 NQSMITPLLITSCFVFCLHVPLCWLLVYKSGLGNLGGALALSFSNCLYTIILGSLMCFSS 240

Query:   240 ACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSV 299
             AC+E+R P+SME+F GIGEFF +A+PSA MICLEWWS+EL+IL+SGLLPNPQLETSVLSV
Sbjct:   241 ACSETRAPLSMEIFDGIGEFFRYALPSAAMICLEWWSYELIILLSGLLPNPQLETSVLSV 300

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2037723 AT1G15150 "AT1G15150" [Arabidopsis thaliana (taxid:3702)]

 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 148/273 (54%), Positives = 208/273 (76%)

Query:    29 GVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSV 88
             G  + E+K+    AAPM AV + Q+++Q++SM+MVGHLG+L+L+S + A+S  +VTGFS 
Sbjct:    26 GSFTAELKRLICFAAPMAAVVIIQFMIQIISMVMVGHLGRLSLASASFAVSFCNVTGFSF 85

Query:    89 LLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDP 148
             ++G++ AL+TL GQAYGA+ Y+++G Q YTA+FCL LVC PLS LW   GKL+V++GQDP
Sbjct:    86 IIGLSCALDTLSGQAYGAKLYRKLGVQAYTAMFCLTLVCLPLSLLWFNMGKLIVILGQDP 145

Query:   149 QISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYK 208
              I+HE G++  WL+P LFAYA +QPLIRYF++QSLI P+ ++S    C+H+P+CW LVYK
Sbjct:   146 AIAHEAGRYAAWLIPGLFAYAVLQPLIRYFKNQSLITPLLVTSSVVFCIHVPLCWLLVYK 205

Query:   209 SXXXXXXXXXXXXXSNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAV 268
             S             S WL   FL  +M +S+AC+E+R P++ME+F+G+ EF  +A+PSA 
Sbjct:   206 SGLGHIGGALALSLSYWLYAIFLGSFMYYSSACSETRAPLTMEIFEGVREFIKYALPSAA 265

Query:   269 MICLEWWSFELLILMSGLLPNPQLETSVLSVWY 301
             M+CLEWWS+EL+IL+SGLLPNPQLETSVLS+ +
Sbjct:   266 MLCLEWWSYELIILLSGLLPNPQLETSVLSICF 298

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2050180 AT2G04050 "AT2G04050" [Arabidopsis thaliana (taxid:3702)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 144/292 (49%), Positives = 195/292 (66%)

Query:    10 MEESLLIPKESLSSSSTTW--GVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLG 67
             MEE  L+  E L     TW  G ++ E+KK   +AAPM AVT++QYLL V+S+M+ GH G
Sbjct:     1 MEEPFLLQDEHLVPCKDTWKSGQVTVELKKVSSLAAPMAAVTIAQYLLPVISVMVAGHNG 60

Query:    68 QLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVC 127
             +L LS  A+A S  +V+GFS+L G+A ALETLCGQAYGA+QY++IGT TY+A      +C
Sbjct:    61 ELQLSGVALATSFTNVSGFSILFGLAGALETLCGQAYGAKQYEKIGTYTYSATASNIPIC 120

Query:   128 FPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPM 187
               +S LWIY  KLL+ +GQDP IS   G + +WL+PALFA+A   PL R+  +Q L++P+
Sbjct:   121 VLISVLWIYIEKLLISLGQDPDISRVAGSYALWLIPALFAHAFFIPLTRFLLAQGLVLPL 180

Query:   188 FLSSCAALCLHIPICWSLVYKSXXXXXXXXXXXXXSNWLNVTFLAIYMKFSTACAESRVP 247
                +   L  HIP+CW+ VY               S W  V  L+ Y+++S++C ++RV 
Sbjct:   181 LYCTLTTLLFHIPVCWAFVYAFGLGSNGAAMAISVSFWFYVVILSCYVRYSSSCDKTRVF 240

Query:   248 ISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSV 299
             +S +    I +FFHF +PSA M+CLEWW FELLIL SGLLPNP+LETSVLS+
Sbjct:   241 VSSDFVSCIKQFFHFGVPSAAMVCLEWWLFELLILCSGLLPNPKLETSVLSI 292

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0042991 "transcription factor import into nucleus" evidence=RCA

TAIR|locus:2033334 AT1G66760 "AT1G66760" [Arabidopsis thaliana (taxid:3702)]

 Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
 Identities = 142/293 (48%), Positives = 202/293 (68%)

Query:     7 EKNMEESLLIPKESLSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL 66
             +K++E  LL+  +  S       +   ++KK   +AAPMVAV +SQYLLQ  S M+VGH 
Sbjct:     2 KKSIETPLLLNTKQ-SQDEDKEKIRWEKMKKVASMAAPMVAVNMSQYLLQATSTMIVGHR 60

Query:    67 GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLV 126
              +LAL+  A+  S A+VTGF VL G++ +LETLCGQAYGA+QY ++G+ T+T+I  L ++
Sbjct:    61 SELALAGIALGSSFANVTGFGVLFGLSGSLETLCGQAYGAKQYHKLGSYTFTSIVFLLII 120

Query:   127 CFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIP 186
               P+S LW++  ++L+L+ QDPQI+   G + +WL+PALF Y+ ++ L+RYFQSQSLI P
Sbjct:   121 SVPISILWMFMNQILLLLHQDPQIAELAGVYCLWLVPALFGYSVLESLVRYFQSQSLIYP 180

Query:   187 MFLSSCAALCLHIPICWSLVYKSXXXXXXXXXXXXXSNWLNVTFLAIYMKFSTACAESRV 246
             M LSS AAL  H+P+CW +V+K              S WLN  FL +YMK S+ C E+R+
Sbjct:   181 MVLSSLAALSFHVPLCWLMVHKFDFGAKGAAASIGISYWLNAVFLWVYMKRSSRCVETRI 240

Query:   247 PISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSV 299
              +S ++F     FF FAIPSA+M CLEW +FE++ L+SGLLPN +LETSV+S+
Sbjct:   241 YMSKDVFVHTNIFFQFAIPSAMMCCLEWLAFEVITLLSGLLPNSKLETSVISI 293

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2010926 AT1G64820 [Arabidopsis thaliana (taxid:3702)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 145/288 (50%), Positives = 197/288 (68%)

Query:    15 LIPKESLSSSSTTWGV--LSGEV-KKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLAL 71
             L+ KE         G+  LS E+ KK   +AAPMVAV++SQ+LLQV+SM+M GHL +L+L
Sbjct:     7 LVRKEEEEEEDNRNGMSYLSMEMMKKVSSMAAPMVAVSVSQFLLQVISMVMAGHLDELSL 66

Query:    72 SSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLS 131
             S+ A+A SL +VTGFS+++G A AL+TLCGQA+GA+Q+ +IG  TY+++ CL + CF +S
Sbjct:    67 SAVAIATSLTNVTGFSLIVGFAGALDTLCGQAFGAEQFGKIGAYTYSSMLCLLVFCFSIS 126

Query:   132 FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSS 191
              +W +  KLL +  QDP IS    ++ IWL+PALF +  +QP+ RYFQSQ + +P+F+SS
Sbjct:   127 IVWFFMDKLLEIFHQDPLISQLACRYSIWLIPALFGFTLLQPMTRYFQSQGITLPLFVSS 186

Query:   192 CAALCLHIPICWSLVYKSXXXXXXXXXXXXXSNWLNVTFLAIYMKFSTACAESRVPISME 251
               ALC HIP CW LVYK              S WLNV  L I+M++S    E +     E
Sbjct:   187 LGALCFHIPFCWLLVYKLKFGIVGAALSIGFSYWLNVFLLWIFMRYSALHREMKNLGLQE 246

Query:   252 LFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSV 299
             L   + +F   AIPSA+MICLEWWSFE+L+LMSGLLPN +LETSV+S+
Sbjct:   247 LISSMKQFIALAIPSAMMICLEWWSFEILLLMSGLLPNSKLETSVISI 294

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA;ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2033309 AT1G66780 "AT1G66780" [Arabidopsis thaliana (taxid:3702)]

 Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
 Identities = 142/278 (51%), Positives = 191/278 (68%)

Query:    22 SSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLA 81
             S   T++ + +  +KK  ++AAPMVAV  SQYLLQV+S++M GHL +L+LS+ A+A SL 
Sbjct:    23 SEDQTSYYLSTEMMKKVSFMAAPMVAVAASQYLLQVISIVMAGHLDELSLSAVAIATSLT 82

Query:    82 SVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLL 141
             +VTGFS++ G+A ALETLCGQA+GA Q++ I   TY ++ CL LVCFP+S LW++  KLL
Sbjct:    83 NVTGFSLIFGLAGALETLCGQAFGAGQFRNISAYTYGSMLCLLLVCFPISLLWVFMDKLL 142

Query:   142 VLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPI 201
              L  QDP IS    ++ IWL+PALF Y+ +Q + R+FQSQ L++P+FLSS  AL  H+P 
Sbjct:   143 ELFHQDPLISQLACRYSIWLIPALFGYSVLQSMTRFFQSQGLVLPLFLSSLGALFFHVPF 202

Query:   202 CWSLVYKSXXXXXXXXXXXXXSNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFH 261
              W LVYK              S WLNV  L  +M+ S    ++    + E+F  + +F  
Sbjct:   203 SWLLVYKLRFGIVGAALSIGFSYWLNVGLLWAFMRDSALYRKNWNLRAQEIFLSMKQFIT 262

Query:   262 FAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSV 299
              AIP+A+M CLEWWSFELLILMSGLLPN +LETSVLS+
Sbjct:   263 LAIPTAMMTCLEWWSFELLILMSGLLPNSKLETSVLSI 300

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

TAIR|locus:2050190 DTX1 "AT2G04040" [Arabidopsis thaliana (taxid:3702)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 137/292 (46%), Positives = 191/292 (65%)

Query:    10 MEESLLIPKESLSSSSTTWGV--LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLG 67
             MEE  L+  E L  S  TW    L+ E+K+   +AAPM  VT++QYLL V+S+M+ GH G
Sbjct:     1 MEEPFLLRDELLVPSQVTWHTNPLTVELKRVSRLAAPMATVTIAQYLLPVISVMVAGHNG 60

Query:    68 QLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVC 127
             +L LS  A+A S  +VTGFS++ G+  ALETLCGQAYGA+QY++IGT  Y+AI     +C
Sbjct:    61 ELQLSGVALANSFTNVTGFSIMCGLVGALETLCGQAYGAKQYEKIGTYAYSAIASNIPIC 120

Query:   128 FPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPM 187
             F +S LW+Y  K+L+ +GQDP+IS   G +  WL+PALF  A + PL R+  +Q L+IP+
Sbjct:   121 FLISILWLYIEKILISLGQDPEISRIAGSYAFWLIPALFGQAIVIPLSRFLLTQGLVIPL 180

Query:   188 FLSSCAALCLHIPICWSLVYKSXXXXXXXXXXXXXSNWLNVTFLAIYMKFSTACAESRVP 247
               ++   L  H+ +CW+LV+               S W     L+ Y++FS++C ++R  
Sbjct:   181 LFTAVTTLLFHVLVCWTLVFLFGLGCNGPAMATSVSFWFYAVILSCYVRFSSSCEKTRGF 240

Query:   248 ISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSV 299
             +S +    I +FF + IPSA MICLEWW FE+LIL SGLLPNP+LETSVLS+
Sbjct:   241 VSRDFVSSIKQFFQYGIPSAAMICLEWWLFEILILCSGLLPNPKLETSVLSI 292

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA;IDA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015691 "cadmium ion transport" evidence=IDA

GO:0051238 "sequestering of metal ion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.X.6692.1	hypothetical protein (455 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_IX1583	hypothetical protein (460 aa)			•						0.425

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	307
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	1e-100
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	7e-38
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	1e-24
pfam01554	161	pfam01554, MatE, MatE	4e-24
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	6e-23
cd13133	438	cd13133, MATE_like_7, Uncharacterized subfamily of	6e-16
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	1e-13
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	6e-13
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	7e-12
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	1e-10
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	3e-10
PRK01766	456	PRK01766, PRK01766, multidrug efflux protein; Revi	2e-09
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	3e-06
cd13142	444	cd13142, MATE_like_12, Uncharacterized subfamily o	6e-06
cd13143	426	cd13143, MATE_MepA_like, Subfamily of the multidru	8e-06
cd13143	426	cd13143, MATE_MepA_like, Subfamily of the multidru	1e-05
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	1e-05
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	5e-05
cd13133	438	cd13133, MATE_like_7, Uncharacterized subfamily of	1e-04
cd13135	429	cd13135, MATE_like_9, Uncharacterized subfamily of	3e-04
cd13145	440	cd13145, MATE_like_5, Uncharacterized subfamily of	5e-04
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	6e-04
cd13142	444	cd13142, MATE_like_12, Uncharacterized subfamily o	7e-04
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	8e-04
cd13139	448	cd13139, MATE_like_14, Uncharacterized subfamily o	8e-04
cd13136	424	cd13136, MATE_DinF_like, DinF and similar proteins	0.003

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score =  300 bits (771), Expect = e-100
 Identities = 126/266 (47%), Positives = 181/266 (68%), Gaps = 1/266 (0%)

Query: 34  EVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMA 93
           E KK   +AAP+V  +L QY L VVS++ VGHLG+L L++ ++A S A+VTGFS+LLG+A
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 94  SALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHE 153
           SAL+TLCGQA+GA+ Y+ +G     A+  L L C P+S LW+    +L+L+GQDP+I+  
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 154 VGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGN 213
            G+++ WL+P LFAYA  +PL RY Q+Q +++P+   S  AL L+I + + LV+  GLG 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 214 LGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLE 273
           +G ALA  IS WL V  L +Y+ FS     +    S E F+G G F   AIPSA+M+CLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 274 WWSFELLILMSGLLPNPQLETSVLSV 299
           WW+FE+L+L++GLLP   +  +  S+
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSI 265

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score =  136 bits (346), Expect = 7e-38
 Identities = 63/247 (25%), Positives = 111/247 (44%), Gaps = 4/247 (1%)

Query: 44  PMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQA 103
           P +   + Q LL +V    VGHLG + L++ ++  S   +  FS+L+G+ +A   L  QA
Sbjct: 1   PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLG-SSVFMFLFSILMGLGTATTALVAQA 59

Query: 104 YGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLV-LIGQDPQISHEVGKFMIWLL 162
            GA  YQR+G Q   ++    L+  P+  +  +    L+ L+G D +++     ++  L+
Sbjct: 60  VGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILI 119

Query: 163 PALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYK--SGLGNLGGALAI 220
             + AY     L  + + Q         +     ++I + + L++     LG +G ALA 
Sbjct: 120 LGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALAT 179

Query: 221 GISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELL 280
            IS WL    L  Y+K +         +    ++ +       +P A  + LE  SF LL
Sbjct: 180 VISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239

Query: 281 ILMSGLL 287
            L+   L
Sbjct: 240 ALLVARL 246

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score =  102 bits (256), Expect = 1e-24
 Identities = 67/260 (25%), Positives = 114/260 (43%), Gaps = 7/260 (2%)

Query: 34  EVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMA 93
           E++    +A P++   L+Q  +  V  +M G LG   L++ A+  SL     F+  +G+ 
Sbjct: 1   ELRALLRLALPILIAQLAQMAMGFVDTVMAGRLGADDLAAVALGSSLWFPV-FTFGMGLL 59

Query: 94  SALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHE 153
            A+  L  QA+GA   +RI       ++   L+  PL  L   A  +L L+GQ+P+++  
Sbjct: 60  LAVTPLVAQAHGAGDRRRIRRAVRQGLWLALLLSLPLMLLLWLAPPILPLMGQEPEVAAI 119

Query: 154 VGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVY-KSGLG 212
              +++ L   +      Q L  +  +     P  + +  AL L+IP+ + L++ K GL 
Sbjct: 120 ARGYLLALAWGIPPALLFQVLRSFLDALGRTRPAMVITLLALVLNIPLNYVLIFGKFGLP 179

Query: 213 NLGG---ALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQG--IGEFFHFAIPSA 267
            LGG    LA  I  WL    LA Y++        R+           + E     +P  
Sbjct: 180 ALGGAGAGLATAIVYWLMFLALAFYIRRHKRFRRYRLFARFWRPDWARLKELLRLGLPIG 239

Query: 268 VMICLEWWSFELLILMSGLL 287
           + I  E   F  + L+ G L
Sbjct: 240 LTIFFEVSLFAAVALLMGRL 259

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|190033 pfam01554, MatE, MatE

 Score = 95.3 bits (238), Expect = 4e-24
 Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 2/161 (1%)

Query: 44  PMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQA 103
           P++   L Q L  ++  + VGHLG +AL++ ++A S+AS+  F  LLG+++AL TL GQA
Sbjct: 1   PIILENLLQSLYSLIDTLFVGHLGAVALAAVSIANSIASLI-FMFLLGLSTALTTLVGQA 59

Query: 104 YGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLL 162
            GA  ++R G      +    L+  P++ L  ++   +L L  QD ++     K++  L 
Sbjct: 60  LGAGNFKRAGVALRQGLILSLLISLPIALLIILFREPILSLFTQDEEVLELASKYLRILA 119

Query: 163 PALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICW 203
             +   +    L  + +      P    +  +L L+IP+ +
Sbjct: 120 LGIPFLSLQFVLSGFLRGAGDTKPPLYINLISLLLNIPLNY 160

The MatE domain. Length = 161

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 97.7 bits (244), Expect = 6e-23
 Identities = 53/249 (21%), Positives = 94/249 (37%), Gaps = 5/249 (2%)

Query: 41  IAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLC 100
           +A P++   L Q L  +V   MVGHLG  AL++  +A  +      ++ +G+ +    L 
Sbjct: 22  LAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPI-FFLIIAIFIGLGTGTTVLV 80

Query: 101 GQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMI 159
            QA GA   ++        +    L+   L+ L   +A  LL L+G   ++     +++ 
Sbjct: 81  AQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLR 140

Query: 160 WLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVY--KSGLGNLGGA 217
            +L           L    +                 L+I + + L++    GLG  G A
Sbjct: 141 IILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAA 200

Query: 218 LAIGISNWLNVTFLAIYMKFSTACAESRVPISMEL-FQGIGEFFHFAIPSAVMICLEWWS 276
           LA  I+ W+    L IY+              ++   + + E     +P  +    E   
Sbjct: 201 LATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLESLSESLG 260

Query: 277 FELLILMSG 285
           F LL L   
Sbjct: 261 FLLLTLFVA 269

Length = 455

>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 77.6 bits (192), Expect = 6e-16
 Identities = 49/256 (19%), Positives = 103/256 (40%), Gaps = 13/256 (5%)

Query: 41  IAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLC 100
           IA P+V   LSQ ++       +G L ++AL+++  A  +       +  G++S ++   
Sbjct: 10  IALPLVLSMLSQTVMGFTDRAFLGRLSEVALAASGPA-GVLYFAILMLFFGLSSGVQVFV 68

Query: 101 GQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLV-LIGQDPQISHEVGKFMI 159
            Q  GA +Y RIG   +  ++   L+   L+ L   A  LL  L+G  P++     ++  
Sbjct: 69  AQYNGAGRYSRIGRVLWQGLYFSLLLAPLLALLSALAAPLLFLLLGHSPEVQALEVEYFR 128

Query: 160 WLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSG----LGNLG 215
             +           L  +F        + +++   + ++I + ++L++       +G  G
Sbjct: 129 IRILGAPFSLLGAALRAFFSGIGRTRVVMVANLVMVVVNIVLDYALIFGKLGFPAMGIAG 188

Query: 216 GALAIGISNWLNVTFLAIYM----KFSTACAESRVPISMELFQGIGEFFHFAIPSAVMIC 271
            A+A  I+  +++ F  + +                   EL           +PS +   
Sbjct: 189 AAIATVIAEAVSLLFFLLLLFRRKNRRRFGLRRAWRFDRELL---RRILRLGLPSGLQFF 245

Query: 272 LEWWSFELLILMSGLL 287
           L+  +F +  L+ G L
Sbjct: 246 LDVGAFTVFFLLIGRL 261

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 70.3 bits (173), Expect = 1e-13
 Identities = 42/204 (20%), Positives = 84/204 (41%), Gaps = 4/204 (1%)

Query: 35  VKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMAS 94
           +K+   +  P+   +LS+ L  ++  + V  LG +AL++  +A+ +AS   F    G+A 
Sbjct: 240 LKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQ 298

Query: 95  ALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSF-LWIYAGKLLVLIGQDPQISHE 153
           A+  L GQ  GA  Y+R       A+    L+   ++  L ++   ++ L   DP++   
Sbjct: 299 AVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIAL 358

Query: 154 VGKFMIWLLPALFAYATMQPLIRYFQSQ-SLIIPMFLSSCAALCLHIPICWSLVYKSGLG 212
               ++              L    +      IP  +S  +     +P+ + L +   LG
Sbjct: 359 AVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGF-FFLG 417

Query: 213 NLGGALAIGISNWLNVTFLAIYMK 236
             G  +   +S  L    L + ++
Sbjct: 418 LAGVWIGFPLSLILRAILLLLRLR 441

Length = 455

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 68.3 bits (168), Expect = 6e-13
 Identities = 46/190 (24%), Positives = 87/190 (45%), Gaps = 8/190 (4%)

Query: 41  IAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLC 100
           +A P++   L Q L+ +V + MVG LG  A+++  +A  +  +    + + + +    L 
Sbjct: 6   LAWPVILENLLQTLVGLVDVFMVGRLGAEAIAAVGLATQVLWLL-LVLNMALGTGTVALV 64

Query: 101 GQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMI 159
            Q+YGA  Y+R       ++    L+  PL+ L  ++A  LL L+G DP++      ++ 
Sbjct: 65  SQSYGAGDYERARRALGQSLLLALLLSLPLALLGLLFAEPLLRLLGADPEVIALALTYLR 124

Query: 160 WLLPALFAYATMQPLIRYFQSQSL-IIPMFLSSCAALCLHIPICWSLVYKS----GLGNL 214
            +L  +  +          +       PM++     + L+I + + L++      GLG  
Sbjct: 125 IVLLGIPFFFLSLVGNAALRGAGDTKTPMYIMIIVNV-LNIVLDYVLIFGLWGFPGLGVA 183

Query: 215 GGALAIGISN 224
           G ALA  IS 
Sbjct: 184 GAALATVISR 193

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 65.0 bits (159), Expect = 7e-12
 Identities = 41/192 (21%), Positives = 76/192 (39%), Gaps = 4/192 (2%)

Query: 45  MVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAY 104
            +  +L    L ++  ++    G  AL++  +A  +AS+  F   LG+A A   + GQ  
Sbjct: 229 AIQNSLLSLGLLIIVAIVAAFGGAAALAAYTVAFRIASLA-FMPALGLAQAALPVVGQNL 287

Query: 105 GAQQYQRI-GTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLP 163
           GA  + R         +  L +       + ++   +L L   DP+       ++  L  
Sbjct: 288 GAGNFDRARRITWVALLIGLLIGAVLGLLILLFPEPILSLFTNDPEFLELAVSYLRILAI 347

Query: 164 ALFAYATMQPLIRYFQS-QSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGI 222
                     L   FQ+    +  + +S  +   + +P+ + L Y  GLG  G  LA+ I
Sbjct: 348 YYLFVGIGYVLQAGFQAAGRTLKSLIVSLLSYWVVRLPLAYVLAY-LGLGLYGIWLALVI 406

Query: 223 SNWLNVTFLAIY 234
           S  L    L ++
Sbjct: 407 SLILAALVLLLF 418

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 50/253 (19%), Positives = 101/253 (39%), Gaps = 5/253 (1%)

Query: 42  AAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCG 101
           AAP++   L Q L  +V    +G L   AL++  +A  L +    ++ +G++     L  
Sbjct: 1   AAPLLLSMLLQTLYNLVDTFFLGRLLGDALAAVGLAFPLIA-LLIALGVGLSVGTSALIS 59

Query: 102 QAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLV-LIGQDPQISHEVGKFMIW 160
           QA GA   ++       +I    L+   L+ L ++   L++ L+G + ++      ++  
Sbjct: 60  QAIGAGDEEKARRVLVQSIVLAILLGLLLAALLLFFSPLILSLLGAEEEVIELAATYLTI 119

Query: 161 LLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSG---LGNLGGA 217
           L+  L        L    Q +       + S  +  L+I +   L++  G   LG  G A
Sbjct: 120 LILGLPITFLGAVLSGILQGEGDTRTAMIISVLSNLLNILLDPLLIFGLGPPELGIAGAA 179

Query: 218 LAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSF 277
           LA  IS  +    L IY++      + ++ +     + +       +PSA+   L     
Sbjct: 180 LATVISYVIGALLLLIYLRKGKKILKFKLSLLKPDLELLRRLLRIGLPSAIQNSLLSLGL 239

Query: 278 ELLILMSGLLPNP 290
            +++ +       
Sbjct: 240 LIIVAIVAAFGGA 252

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 60.2 bits (147), Expect = 3e-10
 Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 3/180 (1%)

Query: 60  MMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTA 119
             +V   G +A ++  +A  + S   F     +  A+ T   Q  GA + +R      T 
Sbjct: 249 NSIVNSYGVVASAAYGIANKINSFA-FLPPSAIGQAVSTFVAQNIGAGKIERAKKGLRTG 307

Query: 120 IFCLFLVCFPLSFLWIYAGKLLVLI-GQDPQISHEVGKFMIWLLPALFAYATMQPLIRYF 178
           I    ++   +  L  +    L+ +   DP++     +++         +  +      F
Sbjct: 308 IIISLIIGLIIILLVFFFAPQLLGLFTSDPEVIEIGAEYLRIYSIDYILFGILFVFNGLF 367

Query: 179 Q-SQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKF 237
           +       PM +S      + IP+ + L   +GLG  G  LA+ ISN L+     IY + 
Sbjct: 368 RGLGKTKFPMIISILRLWLVRIPLAYLLSRLTGLGLFGIWLAMPISNILSAIICIIYYRK 427

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 51/259 (19%), Positives = 104/259 (40%), Gaps = 26/259 (10%)

Query: 31  LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLG--QLALSSTAMAISLASVTGFSV 88
              E ++   +A P++   ++Q  +  V  +M G +    LA  +   +I L  +     
Sbjct: 7   YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHG 66

Query: 89  LLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGK--LLVLIGQ 146
           LL    AL  +  Q  GA + +RI  Q    ++    +   +  + +Y     +L ++  
Sbjct: 67  LL---LALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLV-LYNAVPPILNMMNL 122

Query: 147 DPQISHEVGKF---MIWLLPALFAYATMQPLIRYFQ---SQSLIIPMFLSSCAALCLHIP 200
           +P+++     +   ++W +PA   Y  +    R F     ++    M +     L ++IP
Sbjct: 123 EPEVADIAVGYLHALLWGIPAYLLYQVL----RSFIDGLGKTKPT-MVIGFL-GLLINIP 176

Query: 201 ICWSLVY-KSGLGNLGGA---LAIGISNWLNVTFLAIYMKFSTACAESRVPISMEL--FQ 254
           + +  +Y K G   LGG    +A  I  W+    + IY+K +    + R+   +    + 
Sbjct: 177 LNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWA 236

Query: 255 GIGEFFHFAIPSAVMICLE 273
            I       +P  + I  E
Sbjct: 237 VIKRLLKLGLPIGLAIFFE 255

Length = 456

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 46/192 (23%), Positives = 77/192 (40%), Gaps = 15/192 (7%)

Query: 41  IAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAI-----SLASVTGFSVLLGMASA 95
           I  P     L + L  +V + +V   G  AL+  A  I     SLA + GF     MA++
Sbjct: 231 IGLPAGLEQLLRSLGFLVLLAIVASYGTAALA--AYQIGLRIESLAFMPGFG--FSMAAS 286

Query: 96  LETLCGQAYGAQQYQRIGTQTYTAIF--CLFLVCFPLSFLWIYAGKLLVLIGQDPQISHE 153
             TL GQ  GA            A+    LF+    L  L+I+A  L  L   DP++   
Sbjct: 287 --TLVGQNLGAGDPDEARRYGKRALRLGVLFMGLLGL-LLFIFAPPLASLFTPDPEVIEL 343

Query: 154 VGKFMIWLLPALFAYATMQPLIRYFQ-SQSLIIPMFLSSCAALCLHIPICWSLVYKSGLG 212
              ++  +  +    A    L    + +     P+ ++  +   + +P+ + L +  GLG
Sbjct: 344 GVLYLRIVALSQPFLAISFVLSGALRGAGDTRPPLIINLISMWLVRLPLAYLLGFVLGLG 403

Query: 213 NLGGALAIGISN 224
             G  LA+ +  
Sbjct: 404 LTGIWLAMFVDT 415

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 3/192 (1%)

Query: 35  VKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMAS 94
           +KK   I  P      ++ L   V   +V   G + +++  +   + S+  F    G+A 
Sbjct: 236 LKKIFRIGLPSSIEQSARALGFTVMTALVAGFGTVVVAAYGIGNRIISLV-FLPAFGLAR 294

Query: 95  ALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHE 153
           A  T+ GQ  GA Q  R       A   +FL+      L +++A  ++ +   DP++  E
Sbjct: 295 ATSTMVGQNLGAGQIDRAEEIVKKAALLIFLILVIGGVLAFLFAEPIVRVFINDPEVIKE 354

Query: 154 VGKFMIWLLPALFAYATMQPLIRYFQ-SQSLIIPMFLSSCAALCLHIPICWSLVYKSGLG 212
              F+  + P+   +   Q +   F+ S   +  M +S      + IP+ + L Y  GLG
Sbjct: 355 GADFLRIVAPSFPFFGLFQVINGAFRGSGHTLTAMIISILRLWVIRIPLAYLLAYVLGLG 414

Query: 213 NLGGALAIGISN 224
             G  +A+ ISN
Sbjct: 415 VTGIWIAMAISN 426

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 444

>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA

 Score = 46.3 bits (111), Expect = 8e-06
 Identities = 37/182 (20%), Positives = 74/182 (40%), Gaps = 5/182 (2%)

Query: 57  VVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQT 116
           V+++ ++G+ G + +++  +   + +   F  L+G++  L+ + G  YGA  Y R+    
Sbjct: 248 VLNLTLLGYGGDIGVAAFGIVTRILTFL-FLPLIGLSQGLQPIIGYNYGAGNYDRVKQAL 306

Query: 117 YTAIFCLFLVCFPL-SFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLI 175
             A+    +    L   L ++  +++ L   DP++     + +   L A         L 
Sbjct: 307 KLALIVALIYGLVLFLILLLFPEQIVSLFTDDPELIALAARILRIFLLAFPLAGINIVLS 366

Query: 176 RYFQS-QSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIY 234
            YFQ+         LS        IP+   L+     G  G  LA  ++  L +    I 
Sbjct: 367 GYFQAIGKAKRAALLSLLRQGLFLIPLL--LILPRLFGLDGIWLAFPLAEILTLLLALIL 424

Query: 235 MK 236
           +K
Sbjct: 425 LK 426

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump. Length = 426

>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 45/234 (19%), Positives = 90/234 (38%), Gaps = 11/234 (4%)

Query: 42  AAPMVAVTLSQYLLQVVSMMMVGHL-GQLALSSTAMAISLAS-VTGFSVLLGMASALETL 99
           A P +   L   L  +V  + VGH  G LAL++  +   +   +    +++G+  A  +L
Sbjct: 10  ALPAIIGMLVNGLYNIVDGIFVGHGVGALALAAVNLVFPIIMLLMALGLMIGVGGA--SL 67

Query: 100 CGQAYGAQQYQRIG-TQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQI---SHEVG 155
             +  GA   ++     +   +  L L         ++   LL L+G   ++   + +  
Sbjct: 68  ISRRLGAGDREKANRIFSTALLLSLILGLLLTILGLLFLDPLLRLLGASGELLPYAVDYL 127

Query: 156 KFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLG 215
           + ++   P     + +  L+R      L     L       L+I +    ++  GLG  G
Sbjct: 128 RIILLGAPFTILSSVLNNLLRAEGKPKL---AMLGMLIGAVLNIILDPLFIFVLGLGIAG 184

Query: 216 GALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVM 269
            ALA  I+  +++  L +Y     +  +  +       + I E      PS +M
Sbjct: 185 AALATVIAQLISLLLLLLYFFRGKSLLKLSLLRFKLSLKIIKEILALGFPSFLM 238

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump. Length = 426

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 8/233 (3%)

Query: 41  IAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLC 100
           +A P+    L Q LL  +   M+      A+++  +A  +  +    +   +++    L 
Sbjct: 8   LAWPIFIELLLQMLLGTIDTFMLSRYSDNAVAAVGVANQILFL-LILIFSFISTGTSILI 66

Query: 101 GQAYGAQQYQRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMI 159
            Q  GA+  ++       A+    L+    S  L  +  +LL L+G  P++      ++ 
Sbjct: 67  AQYLGAKDKKKARQIAGVALLFNLLLGLVFSLLLLFFGAELLRLMGLPPELLALGSTYLR 126

Query: 160 WLLPALFAYATMQPLIRYFQSQSL-IIPMFLSSCAALCLHIPICWSLVYKSG----LGNL 214
            +  +LF  A    L    +S     IPM++S      L+I   + L++       LG  
Sbjct: 127 IVGGSLFLQALSLTLSAILRSHGRTKIPMYVSL-IMNILNIVGNYLLIFGWFGLPKLGVA 185

Query: 215 GGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSA 267
           G A++  IS  + +  L I +            +     + + +     +PSA
Sbjct: 186 GVAISTVISRAVGLVLLFILLFRKLKIRFRLKDLRPFPKKLLKKILKIGLPSA 238

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 44.4 bits (106), Expect = 5e-05
 Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 3/122 (2%)

Query: 41  IAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLC 100
           I  P     LS  L Q V    +  LG  AL++   A +++    F   L +  A + + 
Sbjct: 233 IGLPSAGEELSYNLSQTVITAFIARLGTAALAARTYASNISMFV-FLFSLAIGQATQIIV 291

Query: 101 GQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMI 159
           G   GA  +     +   ++    LV   ++ L  ++   +L L   DP+I   +GK ++
Sbjct: 292 GHLVGAGDFDEAYKRVLKSLKIGLLVSLAVALLLALFREPILGLFTDDPEI-IALGKTLL 350

Query: 160 WL 161
            +
Sbjct: 351 LI 352

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 33/167 (19%), Positives = 63/167 (37%), Gaps = 14/167 (8%)

Query: 52  QYLLQVVS----MMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQ 107
           Q+ L V +     +++G LG   L++T +  S+ S+  F  ++G+  A+ +L GQA GA 
Sbjct: 243 QFFLDVGAFTVFFLLIGRLGTTELAATNIVFSINSL-AFLPMIGLGIAVSSLVGQALGAG 301

Query: 108 QYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLI---GQDPQISHEVGKFMIWLLPA 164
           +       T   +         L  L++   +LL+ I   G D  +  E+   ++     
Sbjct: 302 RPDLAMRVTRRGLKLALAYMLLLGILFLLFPELLLSIFTPGADFALIAELAVPLLRF--V 359

Query: 165 LFAYATMQPLIRYFQSQS----LIIPMFLSSCAALCLHIPICWSLVY 207
                     + +  +          M      A    +P  + LV 
Sbjct: 360 AAYILFDALALVFAGALRGAGDTRFVMLAELIVAWLYLLPPAYLLVV 406

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 48/210 (22%), Positives = 85/210 (40%), Gaps = 18/210 (8%)

Query: 36  KKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASA 95
           KK  +IA P++   L   L  +V    +G +     S+     +    T    L  ++  
Sbjct: 1   KKINHIAIPLILQNLVSQLQMLVDRAFLGRISIRYYSAVGNVTTPF-NTITGFLGSISIG 59

Query: 96  LETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIY-AGKLLVLIGQDPQISHE- 153
              L  Q+ GA+  +RI     ++I    ++   L  LW++ A  + VL G D QI    
Sbjct: 60  FTILGSQSVGAKDIKRINDYAISSIVYNSIIGVILFLLWLFGARIIFVLFGVDGQILGYS 119

Query: 154 -----VGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVY- 207
                +    + LL  LF ++++       Q      P+         L++ + + L++ 
Sbjct: 120 INYVRIFSIYLLLLGILFTFSSI------LQGIGETKPIMYGGIIKNLLNVILDYVLIFG 173

Query: 208 KSG---LGNLGGALAIGISNWLNVTFLAIY 234
             G   LG +G A+A  I+N LN+  L   
Sbjct: 174 NFGFPRLGIIGAAIATTIANVLNLIILVYL 203

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 429

>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 14/156 (8%)

Query: 90  LGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDP 148
           +G+ +A+ ++ GQ +GA++Y R+      A+   F++    + FL  +A  L+ L   DP
Sbjct: 287 IGLNTAVLSIAGQNFGAKKYDRVRETYKKALKYGFVIMVVATVFLLFFAEPLMSLFTNDP 346

Query: 149 QISH------EVGKFMIWLLPALFAY-ATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPI 201
            +         +   + +    LF   + +Q L R       I  +++     L     +
Sbjct: 347 AVIAIGAGYLRIDALIFYAYVVLFISVSVLQGLKR------PIFALWIGLYRQLVGPALV 400

Query: 202 CWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKF 237
            W LV   GLG  G    I    W       +Y + 
Sbjct: 401 FWLLVNVLGLGVTGIWWGIFTIVWSAAIIALLYTRR 436

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 440

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 40.9 bits (97), Expect = 6e-04
 Identities = 56/262 (21%), Positives = 100/262 (38%), Gaps = 35/262 (13%)

Query: 40  YIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLALSSTAMAISLAS-----VTGFSVLLGMA 93
             A P++   L Q L  +V +++VG  LG  AL+    A+S  S     +T   +  G++
Sbjct: 7   LFALPLLLSNLLQQLYNLVDLLIVGQFLGVAALA----AVSNGSPIIFLLTAIGM--GLS 60

Query: 94  SALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVC--FPLSFLWIYAGKLLVLIGQDPQIS 151
                L  Q  GA+  ++   +    +  LFL+          ++A  +L L+    +I 
Sbjct: 61  MGGTILISQYIGAKDEEKAK-KAVGTLLVLFLILGIVLTILGLLFAPPILRLMNTPAEIL 119

Query: 152 HEV---GKFMIWLLPALFAYATMQPLIRYFQSQSL---IIPMFLSSCAALCLHIPICWSL 205
                  +     +P +F Y     ++R      L     P++     A  L+I +    
Sbjct: 120 ELAVSYLRICFLGIPFIFGYNAYSAILR-----GLGDSKTPLYF-VIIACVLNIILDLLF 173

Query: 206 VYKSGLGNLGGALAIGISNWLNVTFLAIYM---KFSTACAESRVPISMELFQGIGEFFHF 262
           +    +G  G ALA  I+  ++V     Y+   K     +        E+   + E    
Sbjct: 174 IAVFHMGVAGAALATVIAQAISVLLALYYLRKKKLPFKLSLKDFRFDKEI---LKEILKI 230

Query: 263 AIPSAVMICLEWWSFELLILMS 284
            +PSA+   L   S   LI+ S
Sbjct: 231 GLPSALQQSLV--SISFLIINS 250

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 14/146 (9%)

Query: 40  YIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASV-TGFSVLLGMASALET 98
            +A P++   L Q    +     +G LG  A++  A +IS   +    S+  G+  A   
Sbjct: 15  KLAWPIIVSNLLQVAYNLADTFWLGRLGADAVA--APSISWPLIFLFISLGGGLTVAGTA 72

Query: 99  LCGQAYGAQQYQRIG---TQTYTAIFCLFLVCFPLSFLWIYAGK--LLVLIGQDPQI--- 150
           L  Q  GA  Y +      QT++ +    ++   L+ L     +  LL+LIG   ++   
Sbjct: 73  LVAQYTGAGDYDKANKVAGQTFSFV---IILSLILAVLGYILSRPLLLLLIGAPEEVYPL 129

Query: 151 SHEVGKFMIWLLPALFAYATMQPLIR 176
           +    + +   LP +F +     L+R
Sbjct: 130 ALAYLRIIFLGLPFMFIFFVFNSLLR 155

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 444

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score = 40.2 bits (95), Expect = 8e-04
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 54  LLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIG 113
           L   V+++M G LG   L++  +A++ AS+  F V LG++ A     G A GA       
Sbjct: 248 LFAAVALLM-GRLGTTVLAAHQIALNFASLL-FMVPLGISMAATVRVGFALGAGDPADAR 305

Query: 114 TQTYTAI-FCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIW 160
                 +   +         L ++  ++  L   DP +       +++
Sbjct: 306 RAGLVGLGLGVGFAALTALLLLLFPEQIAGLYTNDPAVIALAASLLVF 353

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 40.3 bits (95), Expect = 8e-04
 Identities = 38/192 (19%), Positives = 71/192 (36%), Gaps = 9/192 (4%)

Query: 52  QYLLQVVSMM----MVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQ 107
           Q+L+   S +    ++   G  AL+   +AI +          G+++A  TL GQ  GA 
Sbjct: 251 QFLIASSSWIFLVRIIAEFGSTALAGYTIAIRIIMFALLPAW-GLSNAAATLVGQNLGAG 309

Query: 108 QYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLV-LIGQDPQISHEVGKFMIWLLP-AL 165
           Q  R     + A     +    +S ++    + LV     DP++   +    + ++    
Sbjct: 310 QPDRAEKSVWRAGKYNMVFLGIVSLVFFLFAEPLVSFFTTDPEVI-AIAVEALRIISLGY 368

Query: 166 FAYATMQPLIRYFQ-SQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISN 224
             Y     L + F  +     P  ++        IP+ + L     LG  G  +AI I+ 
Sbjct: 369 IFYGYGMVLSQAFNGAGDTKTPTLINLVGFWLFQIPLAYLLARHLNLGPKGVFIAIPIAE 428

Query: 225 WLNVTFLAIYMK 236
            +      I  +
Sbjct: 429 TVLAIAAIILFR 440

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 448

>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 37/176 (21%), Positives = 69/176 (39%), Gaps = 4/176 (2%)

Query: 62  MVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIF 121
           +   LG + L++  + +    ++ +  L G A A E L G+A GA   +         + 
Sbjct: 251 LAARLGDVILAANQILLQFWLLSSY-FLDGFAYAAEALVGRALGAGDRKAARRVARRLLQ 309

Query: 122 CLFLVCFPLSFLWIYAGKLLV-LIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQS 180
               +   L+ L+   G+ ++ L   DP +      ++ WL       A    L   F  
Sbjct: 310 WGLGLGVLLALLFFLGGEPIIRLFTDDPAVLALAATYLPWLALLPPIGALAFVLDGIFIG 369

Query: 181 QSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMK 236
            +    +  S   +L + +P+ + LV     GN G  LA+ +   L    LA+ + 
Sbjct: 370 ATDTRYLRNSMLVSLAVFLPLLFLLV--PLWGNHGLWLALILFMLLRGLTLALRLP 423

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	307
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	100.0
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	100.0
PRK00187	464	multidrug efflux protein NorA; Provisional	100.0
PRK10189	478	MATE family multidrug exporter; Provisional	100.0
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	100.0
PRK01766	456	multidrug efflux protein; Reviewed	100.0
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.97
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.96
PRK00187	464	multidrug efflux protein NorA; Provisional	99.95
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.94
PRK10189	478	MATE family multidrug exporter; Provisional	99.94
PRK01766	456	multidrug efflux protein; Reviewed	99.94
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.93
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.92
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.89
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.87
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.87
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.86
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.85
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.84
PRK15099	416	O-antigen translocase; Provisional	99.84
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	99.83
PRK15099	416	O-antigen translocase; Provisional	99.82
PRK10459	492	colanic acid exporter; Provisional	99.79
COG2244	480	RfbX Membrane protein involved in the export of O-	99.75
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.68
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.58
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.55
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	99.44
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.44
PRK10459	492	colanic acid exporter; Provisional	99.33
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	99.22
COG2244	480	RfbX Membrane protein involved in the export of O-	99.08
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	98.94
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	98.91
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	98.83
KOG2864	530	consensus Nuclear division RFT1 protein [Cell cycl	98.63
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	97.88
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	97.08
COG4267	467	Predicted membrane protein [Function unknown]	93.46
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	89.43
COG4267	467	Predicted membrane protein [Function unknown]	81.4

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=100.00  E-value=4.5e-38  Score=289.86  Aligned_cols=272  Identities=21%  Similarity=0.244  Sum_probs=254.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhh
Q 021824           32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR  111 (307)
Q Consensus        32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~  111 (307)
                      ++..|+++++++|.+++++.+.+++.+|++++|++|++++|+.++++++..++ +.+..+++.+..++++|++|+||+++
T Consensus        13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~~   91 (455)
T COG0534          13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRKK   91 (455)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchHH
Confidence            78899999999999999999999999999999999999999999999999998 99999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 021824          112 IGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS  190 (307)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~  190 (307)
                      +++..++++.++++++++.. +.+++.++++.+++.++|+.+.+.+|+++..++.|+..+..++.+.+|+.||++.+++.
T Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~  171 (455)
T COG0534          92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYI  171 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence            99999999999999997777 67999999999999988899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhHhHhhhc-cC-CccchhHHHHHHHHHHHHHHHHHHHHhcccc-ccccCCCCHHHHhcHHHHHHHHhHHH
Q 021824          191 SCAALCLHIPICWSLVYK-SG-LGNLGGALAIGISNWLNVTFLAIYMKFSTAC-AESRVPISMELFQGIGEFFHFAIPSA  267 (307)
Q Consensus       191 ~~~~~~~~i~l~~~li~~-~~-~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~  267 (307)
                      ++++.++|+++|++|+++ .+ +|+.|+++||++++++.+++..++++++++. .....+..+.+++..++++++|+|.+
T Consensus       172 ~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~  251 (455)
T COG0534         172 LLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIF  251 (455)
T ss_pred             HHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHH
Confidence            999999999999999988 56 9999999999999999999999998877642 22223334566688889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHhhhccc
Q 021824          268 VMICLEWWSFELLILMSGLLPNPQLETSVLSVWYVDIDC  306 (307)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~i~~~i~~~  306 (307)
                      +++..+...+...+.+++++|+..+|  ||++..+++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~G~~~lA--a~~i~~~i~~~  288 (455)
T COG0534         252 LESLSESLGFLLLTLFVARLGTVALA--AYGIALRIASF  288 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChHHHH--HHHHHHHHHHH
Confidence            99999999999999999999999988  99999999875

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=100.00  E-value=2e-35  Score=271.98  Aligned_cols=272  Identities=15%  Similarity=0.133  Sum_probs=243.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhh
Q 021824           32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ  110 (307)
Q Consensus        32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~-g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~  110 (307)
                      +++.|+++++++|.++++++..+++.+|+.++|++ |++++|+.+++.++.++. ..+..+++.+..+++||++|+||+|
T Consensus         5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~   83 (441)
T PRK10367          5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ   83 (441)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            45689999999999999999999999999999998 677999999999999987 8899999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 021824          111 RIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFL  189 (307)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~  189 (307)
                      ++++..++++.++++++++.. ....+.++++.+++.|+|+.+.+.+|++++.++.|+..+..++++++|+.||++.++.
T Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~  163 (441)
T PRK10367         84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI  163 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence            999999999999999999888 5577889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHH-HhcHHHHHHHHhHHHH
Q 021824          190 SSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMEL-FQGIGEFFHFAIPSAV  268 (307)
Q Consensus       190 ~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~  268 (307)
                      .++++.++|+++++++++.+++|+.|+++||.+++.+.+++..++++++++.++...+..+++ ++..|++++++.|.++
T Consensus       164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~  243 (441)
T PRK10367        164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML  243 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence            999999999999999998888999999999999999998887777655322111111111112 2467899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHhhhccc
Q 021824          269 MICLEWWSFELLILMSGLLPNPQLETSVLSVWYVDIDC  306 (307)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~i~~~i~~~  306 (307)
                      +...+...+.+.+.+++++|+.++|  ||++..|+.++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~G~~alA--a~~I~~~i~~~  279 (441)
T PRK10367        244 RSLLLQLCFGAITVLGARLGSDIIA--VNAVLMTLLTF  279 (441)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHH
Confidence            9999999999999999999998877  99999999875

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=100.00  E-value=3.5e-35  Score=272.41  Aligned_cols=272  Identities=22%  Similarity=0.271  Sum_probs=244.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhh
Q 021824           32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR  111 (307)
Q Consensus        32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~  111 (307)
                      +++.|+++++++|.+++++...+...+|+.+++++|++++|+++++.++.++. ..+..|++.+..+.+||++|++|+|+
T Consensus         6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~~   84 (464)
T PRK00187          6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIEG   84 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChhh
Confidence            67899999999999999999999999999999999999999999999999987 88899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHH
Q 021824          112 IGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSS  191 (307)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~  191 (307)
                      +++..+++..+.++++++..++..+.++++.+++.|+|+.+.+.+|++++.++.|+..+...+++++|+.||++.+++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~  164 (464)
T PRK00187         85 ATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVIS  164 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            99999999999999999877555577999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhHhHhhhc----cCCccchhHHHHHHHHHHHHHHHHHHHHhccccccc--cCCCCHHHHhcHHHHHHHHhH
Q 021824          192 CAALCLHIPICWSLVYK----SGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAES--RVPISMELFQGIGEFFHFAIP  265 (307)
Q Consensus       192 ~~~~~~~i~l~~~li~~----~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p  265 (307)
                      +++.++|+++||+|+++    |++|+.|+++|+.+++....++..+++++++..++.  +.++.+.+++..|+++++++|
T Consensus       165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P  244 (464)
T PRK00187        165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP  244 (464)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence            99999999999999864    468999999999999988887776666554322211  122223456678899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHhhhccc
Q 021824          266 SAVMICLEWWSFELLILMSGLLPNPQLETSVLSVWYVDIDC  306 (307)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~i~~~i~~~  306 (307)
                      .+++.+.+...+.+.+.+++++|+.++|  |+++..++..+
T Consensus       245 ~~~~~~~~~~~~~i~~~~i~~~G~~alA--a~~i~~~i~~l  283 (464)
T PRK00187        245 IGGTYAVEVGLFTFAALCMGALGSTQLA--AHQIALQIVSV  283 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHH
Confidence            9999999999999999999999999888  99999988754

>PRK10189 MATE family multidrug exporter; Provisional

Probab=100.00  E-value=1.9e-34  Score=267.93  Aligned_cols=278  Identities=15%  Similarity=0.152  Sum_probs=245.1

Q ss_pred             CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 021824           24 SSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQA  103 (307)
Q Consensus        24 ~~~~~~~~~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~  103 (307)
                      |++.|+  -+.+|+++++++|.++++++..+...+|+.+++++|++++|+++++.++..+. +.+..|++++..+++||+
T Consensus        19 ~~~~~~--~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~   95 (478)
T PRK10189         19 KRKSYR--VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFS   95 (478)
T ss_pred             hhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            444553  35589999999999999999999999999999999999999999999999987 999999999999999999


Q ss_pred             hccchhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhC--CChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 021824          104 YGAQQYQRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIG--QDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQS  180 (307)
Q Consensus       104 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~  180 (307)
                      +|+||+|++++..+++..++++++++.+ +.++++++++.++.  .|+|+.+.+.+|+++..++.|+..+..+.++++|+
T Consensus        96 ~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~  175 (478)
T PRK10189         96 LGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRG  175 (478)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999888 55788899999984  68999999999999999999999999999999999


Q ss_pred             cCchhHHHHHHHHHHHhhhhhHhHhhhc----cCCccchhHHHHHHHHHHHHHHHHHHHHhccc--cccccCC-CCHHHH
Q 021824          181 QSLIIPMFLSSCAALCLHIPICWSLVYK----SGLGNLGGALAIGISNWLNVTFLAIYMKFSTA--CAESRVP-ISMELF  253 (307)
Q Consensus       181 ~g~~~~~~~~~~~~~~~~i~l~~~li~~----~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~  253 (307)
                      .||++.++..++++.++|+++++++++.    |++|+.|+++|+.+++.+..++..+++.++++  .+..+.+ +++.++
T Consensus       176 ~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (478)
T PRK10189        176 AGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNF  255 (478)
T ss_pred             cCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCH
Confidence            9999999999999999999999999864    47999999999999999998887666544311  1111111 122356


Q ss_pred             hcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHhhhccc
Q 021824          254 QGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVWYVDIDC  306 (307)
Q Consensus       254 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~i~~~i~~~  306 (307)
                      +.+++++++|+|.+++.......+.+.+.+++++|+.++|  ||++..|+.++
T Consensus       256 ~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~A--a~~I~~~i~~~  306 (478)
T PRK10189        256 AIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIA--GNFIAFSIAAL  306 (478)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHH
Confidence            7788999999999999999999999999999999999887  99999998764

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=100.00  E-value=1.2e-33  Score=261.58  Aligned_cols=272  Identities=13%  Similarity=0.065  Sum_probs=244.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhh
Q 021824           32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ  110 (307)
Q Consensus        32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~-g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~  110 (307)
                      ++..|+++++++|.+++++...++..+|+.+++++ |++++++++++.++.++. ..+..+++.+..++++|++|+||+|
T Consensus         8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~   86 (453)
T PRK09575          8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLE   86 (453)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHH
Confidence            45679999999999999999999999999999996 999999999999999987 8889999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 021824          111 RIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFL  189 (307)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~  189 (307)
                      ++++..++++.++++++++.. +.+.++++++.+++.|+++.+.+.+|+++..++.|+..+.....+++|+.|+++.++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~  166 (453)
T PRK09575         87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG  166 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence            999999999999999999888 5688999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHHHHHHhHHHHH
Q 021824          190 SSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVM  269 (307)
Q Consensus       190 ~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  269 (307)
                      .++++.++|+++++++++.+++|+.|+++|+.+++++..++..+++++++...+...+..+.+++..|+++++|+|.+++
T Consensus       167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~  246 (453)
T PRK09575        167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFM  246 (453)
T ss_pred             HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHH
Confidence            99999999999999999888899999999999999999988877766543332222222234567788999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHhhhccc
Q 021824          270 ICLEWWSFELLILMSGLLPN-PQLETSVLSVWYVDIDC  306 (307)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~g~-~~~a~~~~~i~~~i~~~  306 (307)
                      .......+.+.+.+.+++|+ .++|  ++++..++..+
T Consensus       247 ~~~~~~~~~~~~~~~~~~g~~~~lA--a~~i~~~i~~~  282 (453)
T PRK09575        247 YLYGSFVVALHNRLFMEYGSALTVG--AYAIVGYLMVL  282 (453)
T ss_pred             HHHHHHHHHHHHHHHHHhCchHHHH--HHHHHHHHHHH
Confidence            99999999999999999996 4666  99999888654

>PRK01766 multidrug efflux protein; Reviewed

Probab=100.00  E-value=4e-33  Score=258.70  Aligned_cols=272  Identities=18%  Similarity=0.268  Sum_probs=244.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhh
Q 021824           32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR  111 (307)
Q Consensus        32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~  111 (307)
                      ++.+|+++++++|.+++++...+...+|+.+++++|++++++++++.++.... ..+..|++.+..|.+||++|++|+|+
T Consensus         8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~~~   86 (456)
T PRK01766          8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRRER   86 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChHH
Confidence            78899999999999999999999999999999999999999999999998776 88899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 021824          112 IGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS  190 (307)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~  190 (307)
                      .++..++++.+++++++++. +.+.++++++.+++.|+++.+.+.+|+++.+++.|+..+..++++++|+.||++.+++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  166 (456)
T PRK01766         87 IAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVI  166 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence            99999999999999999888 55778899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhHhHhhhc----cCCccchhHHHHHHHHHHHHHHHHHHHHhccccc--cccCCCCHHHHhcHHHHHHHHh
Q 021824          191 SCAALCLHIPICWSLVYK----SGLGNLGGALAIGISNWLNVTFLAIYMKFSTACA--ESRVPISMELFQGIGEFFHFAI  264 (307)
Q Consensus       191 ~~~~~~~~i~l~~~li~~----~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  264 (307)
                      ++++.++|+++++++++.    |++|+.|+++|+.+++.+..++..++++++++.+  +.+.++.+.+++..|+++++++
T Consensus       167 ~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~  246 (456)
T PRK01766        167 GFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGL  246 (456)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccc
Confidence            999999999999999853    5689999999999999999998887776554321  1222222345667889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHhhhccc
Q 021824          265 PSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVWYVDIDC  306 (307)
Q Consensus       265 p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~i~~~i~~~  306 (307)
                      |..++...+...+.+.+.+++++|+.++|  ++++..++..+
T Consensus       247 P~~~~~~~~~~~~~~~~~~~~~~G~~~lA--a~~i~~~i~~~  286 (456)
T PRK01766        247 PIGLAIFFEVSLFAVVTLLVSPLGTVTVA--AHQIALNFSSL  286 (456)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcChHHHH--HHHHHHHHHHH
Confidence            99999999999999999999999998888  99999887654

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.97  E-value=7.6e-28  Score=215.15  Aligned_cols=259  Identities=26%  Similarity=0.393  Sum_probs=230.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhhHHHHHHHHHHHH
Q 021824           44 PMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCL  123 (307)
Q Consensus        44 p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~  123 (307)
                      |.+++++...+...+|+.+++++|++++++++++.++..+. ..+..+++++..|.++|+.|++|+|++++..+.+..+.
T Consensus         1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~   79 (342)
T TIGR00797         1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA   79 (342)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999998887 88999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHhhhhhH
Q 021824          124 FLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPIC  202 (307)
Q Consensus       124 ~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~  202 (307)
                      .+++++.+ +++++++++..+++.|++..+.+..++++++++.++.++..+..+++|+.||++..+..++++.+++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~  159 (342)
T TIGR00797        80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN  159 (342)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence            99999988 56889999999888788888999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhh-ccC-CccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHHHHHHhHHHHHHHHHHHHHHHH
Q 021824          203 WSLVY-KSG-LGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELL  280 (307)
Q Consensus       203 ~~li~-~~~-~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  280 (307)
                      +.+++ ..+ +|+.|+++++.+++++.+++..++.+++++.+..|.+..+.+++..|++.+.++|..+.+......+.+.
T Consensus       160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~  239 (342)
T TIGR00797       160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL  239 (342)
T ss_pred             HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            99887 556 7799999999999999999887777653332222222223455678899999999999999999999999


Q ss_pred             HHHHhcCCchhhhhHHHHHHhhhcc
Q 021824          281 ILMSGLLPNPQLETSVLSVWYVDID  305 (307)
Q Consensus       281 ~~~~~~~g~~~~a~~~~~i~~~i~~  305 (307)
                      +.+.+.+|+.+++  ++++..++..
T Consensus       240 ~~i~~~~g~~~v~--~~~~a~~~~~  262 (342)
T TIGR00797       240 ALLVARLGSIALA--AHQIALNVES  262 (342)
T ss_pred             HHHHHHcCcHHHH--HHHHHHHHHH
Confidence            9999999998877  8888877654

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.96  E-value=4.8e-27  Score=215.68  Aligned_cols=272  Identities=42%  Similarity=0.734  Sum_probs=260.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhh
Q 021824           32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR  111 (307)
Q Consensus        32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~  111 (307)
                      +++.|++.+++.|.++..+.+.....++..++||+|+.++++.+++++..+...+.+..|+..+..++++|++|+++++.
T Consensus        24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~  103 (473)
T KOG1347|consen   24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA  103 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence            68899999999999999999999999999999999999999999999999987789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHH
Q 021824          112 IGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSS  191 (307)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~  191 (307)
                      ...+.+++..+....+++...++.+.+++...+++|+++...+..|.+++.+..+.+........++|++++..+..+..
T Consensus       104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~  183 (473)
T KOG1347|consen  104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG  183 (473)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHHHHHHhHHHHHHH
Q 021824          192 CAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMIC  271 (307)
Q Consensus       192 ~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  271 (307)
                      ....++++++++++++.+++|..|++++..+++++...++..|.+... +.+.|..++++ ++.++++++.++|+++|.+
T Consensus       184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~mic  261 (473)
T KOG1347|consen  184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMIC  261 (473)
T ss_pred             HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchheeH
Confidence            999999999999999999999999999999999999999988887665 67788888777 9999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHHHHHHhhhcc
Q 021824          272 LEWWSFELLILMSGLLPNPQLETSVLSVWYVDID  305 (307)
Q Consensus       272 ~~~~~~~~~~~~~~~~g~~~~a~~~~~i~~~i~~  305 (307)
                      +|++.++++.+..+.+++..+++++.+|+.++.+
T Consensus       262 lE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~  295 (473)
T KOG1347|consen  262 LEWWAYEILVLLAGLLGNAKVSLASQSICLEIGG  295 (473)
T ss_pred             HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Confidence            9999999999999999997777779999998765

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.95  E-value=4.7e-25  Score=204.75  Aligned_cols=206  Identities=17%  Similarity=0.249  Sum_probs=191.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhh
Q 021824           32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR  111 (307)
Q Consensus        32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~  111 (307)
                      ++.+|+++++++|.+++++.+.....+|+.+++++|++++|+++++.++..+. +.+..|++++.+++++|++|+||+|+
T Consensus       232 ~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~~~~  310 (464)
T PRK00187        232 RAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGRLLE  310 (464)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            67799999999999999999999999999999999999999999999999987 99999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC--Ch---hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchh
Q 021824          112 IGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQ--DP---QISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLII  185 (307)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~--~~---~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~  185 (307)
                      +++..+.+..++.+++++.. +++++++++..++.+  |+   |+.+.+..|+++.+++.++..++.++.+.+||.||++
T Consensus       311 ~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~  390 (464)
T PRK00187        311 ARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDAR  390 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccH
Confidence            99999999999999999888 568899999999853  43   7889999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhc
Q 021824          186 PMFLSSCAA-LCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFS  238 (307)
Q Consensus       186 ~~~~~~~~~-~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~  238 (307)
                      .+++.++++ ++++++++|++.+.+++|+.|+|+++.+++.+..++....++.+
T Consensus       391 ~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~  444 (464)
T PRK00187        391 TTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWK  444 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999 59999999999988889999999999999999988776655443

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.94  E-value=6.7e-25  Score=202.48  Aligned_cols=212  Identities=19%  Similarity=0.231  Sum_probs=201.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccch
Q 021824           29 GVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQ  108 (307)
Q Consensus        29 ~~~~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~  108 (307)
                      +..++.+|+++++|+|..+.++.......+.+.+++++|++++|+|+++.++.++. +.+..|++++++++++|++|+||
T Consensus       234 ~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvG~~~Ga~~  312 (455)
T COG0534         234 KPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQAVTILVGQNLGAGN  312 (455)
T ss_pred             CCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCC
Confidence            44478999999999999999999999999999999999999999999999999998 99999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHH
Q 021824          109 YQRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPM  187 (307)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~  187 (307)
                      +|++++..+.+..+++++++... +++++++++..+|.+|+|+.+.+.+++++..+..++.+++.+..+++||.||++.+
T Consensus       313 ~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~  392 (455)
T COG0534         313 YKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIP  392 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence            99999999999999999999988 67999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-HHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccc
Q 021824          188 FLSSCAA-LCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACA  242 (307)
Q Consensus       188 ~~~~~~~-~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~  242 (307)
                      ++.++++ +++.+++.+++.+.+ +|..|+|++...++.+..++..+++++++|+.
T Consensus       393 ~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~  447 (455)
T COG0534         393 FIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRR  447 (455)
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            9999998 888899999998665 99999999999999999999998888876653

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.94  E-value=9.8e-25  Score=202.96  Aligned_cols=210  Identities=15%  Similarity=0.056  Sum_probs=198.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhh
Q 021824           32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR  111 (307)
Q Consensus        32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~  111 (307)
                      ++.+|+++++|+|..++.....+...+.+.+++++|++++|+++++.++.++. +.+..|++++.+++++|++|+||.|+
T Consensus       255 ~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~-~~~~~gi~~A~~~lvg~~~Ga~~~~~  333 (478)
T PRK10189        255 FAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI-NLPGNALGSASTIITGTRLGKGQIAQ  333 (478)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence            67899999999999999999999999999999999999999999999999998 88999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 021824          112 IGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS  190 (307)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~  190 (307)
                      +++..+.+..++.+.++.+. +++++++++..+|.+|+|+.+.+..++++.++..++.+++.+..+.+||.||++.+++.
T Consensus       334 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i  413 (478)
T PRK10189        334 AERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWV  413 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHH
Confidence            99999999999999998888 56889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH-HHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccc
Q 021824          191 SCAA-LCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACA  242 (307)
Q Consensus       191 ~~~~-~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~  242 (307)
                      ++++ +++.+|+.|++....++|+.|+|++..+++.+..++..+++++.+|++
T Consensus       414 ~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~  466 (478)
T PRK10189        414 SMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW  466 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence            9988 789999999987666799999999999999999999888888877765

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.94  E-value=1.2e-24  Score=202.07  Aligned_cols=208  Identities=16%  Similarity=0.221  Sum_probs=196.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhh
Q 021824           32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR  111 (307)
Q Consensus        32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~  111 (307)
                      ++.+|+++++++|.+++.+.+.....++..+++++|++++++++++.++.++. ..+..|++.+.++.++|++|+||+++
T Consensus       235 ~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~~a~~~~v~~~~Ga~~~~~  313 (456)
T PRK01766        235 WAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLAMALTIRVGFELGAGRTLD  313 (456)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence            67799999999999999999999999999999999999999999999999998 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 021824          112 IGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS  190 (307)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~  190 (307)
                      +++..+.+..+++.++++.. +++.+++++..++.+|+|+.+.+..|+++..+..++..++.+..+.+||.||++.++..
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~  393 (456)
T PRK01766        314 ARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFI  393 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHH
Confidence            99999999999999999888 66889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH-HHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccc
Q 021824          191 SCAA-LCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTA  240 (307)
Q Consensus       191 ~~~~-~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~  240 (307)
                      ++++ +++++++.+++.+.+++|+.|+|+++.+++.+..++..+++++.+|
T Consensus       394 ~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~  444 (456)
T PRK01766        394 TFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQR  444 (456)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998 4899999999988788999999999999999999988877766543

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.93  E-value=8.8e-24  Score=195.79  Aligned_cols=204  Identities=18%  Similarity=0.156  Sum_probs=189.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhh
Q 021824           32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQ-LALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ  110 (307)
Q Consensus        32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~-~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~  110 (307)
                      ++.+|+++++|.|..++.....+...+.+.+++++|+ +++|+++++.++..+. ..+..|++.+..+++||++|+||+|
T Consensus       230 ~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvg~~~Ga~~~~  308 (453)
T PRK09575        230 WSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY-YLVAEGIAEGMQPPVSYYFGARQYD  308 (453)
T ss_pred             HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhcCCChH
Confidence            6778999999999999999999999999999999985 5899999999999997 9999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH
Q 021824          111 RIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQ-DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMF  188 (307)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~-~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~  188 (307)
                      ++++..+.+..+++..+++.+ +++.+++++..+|.. |+|+.+.+.+|+++.+++.++.++..+..+++||.||++.++
T Consensus       309 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~  388 (453)
T PRK09575        309 NIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKAL  388 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            999999999999999999988 568899999999985 789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhc
Q 021824          189 LSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFS  238 (307)
Q Consensus       189 ~~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~  238 (307)
                      +.++.+.++++++.|++...  +|+.|+|+++.+++.+..++..++++++
T Consensus       389 ~~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~~  436 (453)
T PRK09575        389 FISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWRD  436 (453)
T ss_pred             HHHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence            99998888999999998743  8999999999999999888877666543

>TIGR01695 mviN integral membrane protein MviN

Probab=99.92  E-value=3.1e-22  Score=188.01  Aligned_cols=234  Identities=14%  Similarity=0.129  Sum_probs=201.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhh
Q 021824           32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR  111 (307)
Q Consensus        32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~  111 (307)
                      ++.+|++++++.|..+++....+...+|+.+.+.+|++++++|+.+.++.+++...+..+++++..|.++|++|+||+++
T Consensus       219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~  298 (502)
T TIGR01695       219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE  298 (502)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            67789999999999999999999999999886667999999999999999887345678999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC----ChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhH
Q 021824          112 IGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQ----DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIP  186 (307)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~  186 (307)
                      .++..+++......++++.+ .++.++++++.++.+    |+|..+.+..++++++++.++..+..++.+.+++.||++.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~  378 (502)
T TIGR01695       299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT  378 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence            99999999999999999988 568899999988865    5577888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHHHHHHhHH
Q 021824          187 MFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPS  266 (307)
Q Consensus       187 ~~~~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  266 (307)
                      +++.++.+.++|+++++++++  .+|..|+++|+.+++.+..++..++.+|+...        .+..+..+++.|...++
T Consensus       379 ~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~as  448 (502)
T TIGR01695       379 PFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRRLKG--------ILPFGVLKVLAKLVIAS  448 (502)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCc--------CCchHHHHHHHHHHHHH
Confidence            999999999999999999984  49999999999999999998887777654211        11123344666767777


Q ss_pred             HHHHHHHHH
Q 021824          267 AVMICLEWW  275 (307)
Q Consensus       267 ~~~~~~~~~  275 (307)
                      .+|....+.
T Consensus       449 ~~m~~~~~~  457 (502)
T TIGR01695       449 AIIGGVLYL  457 (502)
T ss_pred             HHHHHHHHH
Confidence            776655443

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.89  E-value=1.6e-20  Score=173.08  Aligned_cols=202  Identities=20%  Similarity=0.167  Sum_probs=172.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhh
Q 021824           32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR  111 (307)
Q Consensus        32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~  111 (307)
                      ++.+|++++.+.|..+++........+.+.+++++|++++|+|+++.++.++. +.+..|++++.+++++|++|+||+|+
T Consensus       228 ~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~-~~~~~gl~~a~~~lvg~~~Ga~~~~~  306 (441)
T PRK10367        228 RGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFT-AYALDGFAYAVEAHSGQAYGARDGSQ  306 (441)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHcCCCHHH
Confidence            35789999999999999999999999999999999999999999999999998 99999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcC---chhHH
Q 021824          112 IGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQS---LIIPM  187 (307)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g---~~~~~  187 (307)
                      +++..+.+..++.+++.+.. +++++++++..+|.+|+|+.+.+..++++.++..+......++.+.++|.+   |++.+
T Consensus       307 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~  386 (441)
T PRK10367        307 LLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNS  386 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHH
Confidence            99999999999999999988 568899999999999999999999999999876443334444444444444   59999


Q ss_pred             HHHHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhcccc
Q 021824          188 FLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTAC  241 (307)
Q Consensus       188 ~~~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~  241 (307)
                      ++.+.++..+    .++..  +.+|..|+|++..+++.+..++..++++++ |+
T Consensus       387 ~~~~~~~~~~----~~~~~--~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~  433 (441)
T PRK10367        387 MAVAAAGFAL----TLLTL--PWLGNHGLWLALTVFLALRGLSLAAIWRRH-WR  433 (441)
T ss_pred             HHHHHHHHHH----HHHHH--HHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence            9988888442    12222  348999999999999999999887766554 53

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.87  E-value=4.3e-19  Score=163.95  Aligned_cols=211  Identities=17%  Similarity=0.127  Sum_probs=194.6

Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 021824           26 TTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYG  105 (307)
Q Consensus        26 ~~~~~~~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g  105 (307)
                      .+++...+..|++++...|..++....++...+|+.+.+.+++.++++++.++++.+++...+..+++++..|..++...
T Consensus       188 ~~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~  267 (451)
T PF03023_consen  188 PKFDWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAA  267 (451)
T ss_pred             ccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33443367799999999999999999999999999999999999999999999999999778888999999999999999


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhC----CChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 021824          106 AQQYQRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIG----QDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQS  180 (307)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~  180 (307)
                      +||.++.++..++++...+.+.+|.+ .++.++++++..+.    .|.|..+.+..++++++++.|+.+++..+...+.+
T Consensus       268 ~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya  347 (451)
T PF03023_consen  268 EGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYA  347 (451)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999 67999999998774    26677888999999999999999999999999999


Q ss_pred             cCchhHHHHHHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhc
Q 021824          181 QSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFS  238 (307)
Q Consensus       181 ~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~  238 (307)
                      .||+|.++..++++.++|+++++++...  +|..|.++|+.++.++.+++..+.++|+
T Consensus       348 ~~~~~~~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~  403 (451)
T PF03023_consen  348 LGDTKTPVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRR  403 (451)
T ss_pred             ccCcHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999844  9999999999999999999988877665

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>TIGR01695 mviN integral membrane protein MviN

Probab=99.87  E-value=6.3e-19  Score=165.60  Aligned_cols=258  Identities=9%  Similarity=0.009  Sum_probs=203.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hChHHH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHhhccchhhhHHH
Q 021824           38 QGYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLAL-SSTAMAISLASVTGFSVL-LGMASALETLCGQAYGAQQYQRIGT  114 (307)
Q Consensus        38 il~~~~p~~i~~~~~~l~~~i~~~~i~~-~g~~~~-a~~~i~~~l~~~~~~~~~-~~i~~a~~~~~s~~~g~~~~~~~~~  114 (307)
                      +.|-+.-..++++...+.+.+|..++++ +|+++. ++|+++.++.+.+..... .|++++..+...++.+++  |+.++
T Consensus         2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~   79 (502)
T TIGR01695         2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR   79 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence            4577788889999999999999999999 699999 899999999877623333 468888878776664433  67777


Q ss_pred             HHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 021824          115 QTYTAIFCLFLVCFP-LS-FLWIYAGKLLVLI--GQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS  190 (307)
Q Consensus       115 ~~~~~~~~~~~~~~~-~~-~~~~~~~~i~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~  190 (307)
                      ....+.....+++.. .. +.+++++++..++  +.+++..+.+.+|++++.++.|+..+..+.++++|+.||++.+++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  159 (502)
T TIGR01695        80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS  159 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence            777766666654444 34 4577888888887  4467777899999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhHhHhhhccCCccchhH--HHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHHHHHHhHHHH
Q 021824          191 SCAALCLHIPICWSLVYKSGLGNLGGA--LAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAV  268 (307)
Q Consensus       191 ~~~~~~~~i~l~~~li~~~~~G~~Ga~--~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  268 (307)
                      +++..+++++..+++.  +++|..|++  +++.+++.+..++..++.++++.+.+.  ++ ..+++..|++++.+.|..+
T Consensus       160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~k~~l~~~~p~~~  234 (502)
T TIGR01695       160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP--RF-NFRDPGLKRFLKLFLPTTL  234 (502)
T ss_pred             HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC--cC-CCCChhHHHHHHHHHHHHH
Confidence            9999888877655555  568999988  999999999888877666554321111  11 1234567899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHhhhc
Q 021824          269 MICLEWWSFELLILMSGLLPNPQLETSVLSVWYVDI  304 (307)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~i~~~i~  304 (307)
                      ..........+...+.+.+|+.+++  +++...++.
T Consensus       235 ~~~~~~~~~~id~~~~~~~~~~~v~--~~~~a~~l~  268 (502)
T TIGR01695       235 GSSASQITLLINTALASFLEIGSVS--ALYYANRIY  268 (502)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcchHH--HHHHHHHHH
Confidence            9999998888888888888988777  777776654

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.86  E-value=1e-18  Score=163.66  Aligned_cols=202  Identities=17%  Similarity=0.173  Sum_probs=176.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----C---hH---HHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 021824           32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL----G---QL---ALSST-AMAISLASVTGFSVLLGMASALETLC  100 (307)
Q Consensus        32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~----g---~~---~~a~~-~i~~~l~~~~~~~~~~~i~~a~~~~~  100 (307)
                      ++.+|++++++.|..++++...+...+|+.++++.    |   .+   ..+.| +++.++.+++ ..+..+++.+..|.+
T Consensus       221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~~  299 (488)
T TIGR02900       221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPDI  299 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999874    2   11   22333 3566777777 778899999999999


Q ss_pred             HHhhccchhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 021824          101 GQAYGAQQYQRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQ  179 (307)
Q Consensus       101 s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~  179 (307)
                      +|++|+||+++.++..+++..+...++++.+ .+..++++++.++.+++    .+.+++++++++.++..+.....+.++
T Consensus       300 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l~  375 (488)
T TIGR02900       300 SEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSILQ  375 (488)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988 56888999998887544    367789999999999999999999999


Q ss_pred             HcCchhHHHHHHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhc
Q 021824          180 SQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFS  238 (307)
Q Consensus       180 ~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~  238 (307)
                      +.||++..++.++.+.++|+++++.++..|.+|+.|+++|+.+++.+..++..++.+|.
T Consensus       376 ~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~  434 (488)
T TIGR02900       376 GLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN  434 (488)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998744569999999999999999998887777553

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.85  E-value=5.5e-18  Score=155.40  Aligned_cols=247  Identities=14%  Similarity=0.119  Sum_probs=212.0

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 021824           25 STTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAY  104 (307)
Q Consensus        25 ~~~~~~~~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~  104 (307)
                      +++|+...+..|++.+...|..++....++...+|+.+.+.+.+.+.+.++.++++.+++.-.+..++++...|..||+.
T Consensus       221 ~p~~~~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~  300 (518)
T COG0728         221 KPRFGFKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHA  300 (518)
T ss_pred             CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence            44454434789999999999999999999999999999999999999999999999999977999999999999999999


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC----ChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 021824          105 GAQQYQRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQ----DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQ  179 (307)
Q Consensus       105 g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~  179 (307)
                      .++|.++.++..++++.++.++++|.. .++.++++++..+..    +++....+.+.+..+.+++++..+..++...+.
T Consensus       301 ~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FY  380 (518)
T COG0728         301 ANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFY  380 (518)
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999 679999999987732    456677888999999999999999999999999


Q ss_pred             HcCchhHHHHHHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHH
Q 021824          180 SQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEF  259 (307)
Q Consensus       180 ~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (307)
                      +++|+|.|+...+++.++|+.+++.+.  +.+|..|.++++.++.++++.++++..+|+...      .+.+.|.... .
T Consensus       381 Ar~d~ktP~~i~ii~~~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~------~~~~~~~~~~-~  451 (518)
T COG0728         381 AREDTKTPMKIAIISLVVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKRLVY------LPGRGWGLFL-I  451 (518)
T ss_pred             HccCCCcChHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHhcCC------CccchhhHHH-H
Confidence            999999999999999999999998877  448999999999999999998887777665321      1134445444 6


Q ss_pred             HHHHhHHHHHHHHHHHHHHHH
Q 021824          260 FHFAIPSAVMICLEWWSFELL  280 (307)
Q Consensus       260 ~~~~~p~~~~~~~~~~~~~~~  280 (307)
                      .|..+..+++....+......
T Consensus       452 ~k~~l~~~i~~~~~~~~~~~~  472 (518)
T COG0728         452 LKLLLASAIMAAALLALLHLA  472 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            677777777766655444444

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.84  E-value=2.3e-18  Score=161.19  Aligned_cols=244  Identities=13%  Similarity=0.111  Sum_probs=199.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhhHHHHHH
Q 021824           39 GYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTY  117 (307)
Q Consensus        39 l~~~~p~~i~~~~~~l~~~i~~~~i~~-~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~  117 (307)
                      .|-+.|.+++++...+.+.+|+.++++ +|+++.|+++.+..+..++......|++++..+.++|+.|++|+++.++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~   81 (488)
T TIGR02900         2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK   81 (488)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence            466899999999999999999999999 5999999999999998887333446899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHH
Q 021824          118 TAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALC  196 (307)
Q Consensus       118 ~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~~~~~~  196 (307)
                      ++..+.++.+++.. +++.+.+++...+.+|++.    ..+++++.+..++..+.....+++|+.+|.+..+..+.++.+
T Consensus        82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i  157 (488)
T TIGR02900        82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI  157 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence            99999999999888 5577788887777666543    356888899999999999999999999999999999999999


Q ss_pred             hhhhhHhHhhh-----ccCCccchhHHHHHHHHHHHHHHHHHHHHhccccc--cccCCCCHHHHhcHHHHHHHHhHHHHH
Q 021824          197 LHIPICWSLVY-----KSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACA--ESRVPISMELFQGIGEFFHFAIPSAVM  269 (307)
Q Consensus       197 ~~i~l~~~li~-----~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~  269 (307)
                      ++++++..++.     ..++|+.|+++++.+++.+..++..++++++++.+  ..+.+..+.+++..|++++.++|..++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~  237 (488)
T TIGR02900       158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS  237 (488)
T ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence            88877655542     23467888999999999999888776665443311  111112234456788999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 021824          270 ICLEWWSFELLILMSGL  286 (307)
Q Consensus       270 ~~~~~~~~~~~~~~~~~  286 (307)
                      ++.......+.+.++++
T Consensus       238 ~~~~~~~~~~d~~ii~~  254 (488)
T TIGR02900       238 RFIGSLLYFLETLLVPQ  254 (488)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99998888877776654

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PRK15099 O-antigen translocase; Provisional

Probab=99.84  E-value=1.7e-18  Score=158.92  Aligned_cols=257  Identities=12%  Similarity=0.001  Sum_probs=203.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhhHHHHH
Q 021824           38 QGYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQT  116 (307)
Q Consensus        38 il~~~~p~~i~~~~~~l~~~i~~~~i~~-~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~  116 (307)
                      +.|-+.....+.+...+.+++...++.+ +|+++.|.++....+..++......|++++....++|+  ++|+|+.++..
T Consensus         3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~   80 (416)
T PRK15099          3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV   80 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence            4455666777888888888888888888 49999999999999888774444888888888889988  67888999999


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH
Q 021824          117 YTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAAL  195 (307)
Q Consensus       117 ~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~~~~~  195 (307)
                      ..++.+.++.+++++ +.+++.+++...+..+++ .   ..++.+..+..++..+.....+.+|+.||++.++...+++.
T Consensus        81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~  156 (416)
T PRK15099         81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD-Y---QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS  156 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999888 568888999887776664 2   34566666666677888899999999999999999999999


Q ss_pred             HhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHHHHHHhHHHHHHHHHHH
Q 021824          196 CLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWW  275 (307)
Q Consensus       196 ~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  275 (307)
                      ++|+++ +++... ..|+.|+++|+.+++.+..++..+++++++..+..+.+ .+.+++..|++++.|+|...++.....
T Consensus       157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k~ll~~g~p~~~~~~~~~i  233 (416)
T PRK15099        157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLK-PSWDNGLAGQLGKFTLMALITSVTLPV  233 (416)
T ss_pred             HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhh-ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999887 444433 14999999999999999888777666554321111111 123456678999999999999999999


Q ss_pred             HHHHHHHHHh-cCCchhhhhHHHHHHhhhcc
Q 021824          276 SFELLILMSG-LLPNPQLETSVLSVWYVDID  305 (307)
Q Consensus       276 ~~~~~~~~~~-~~g~~~~a~~~~~i~~~i~~  305 (307)
                      .....+.+++ .+|+.+++  .|++..++..
T Consensus       234 ~~~~~~~~l~~~~g~~~vg--~y~~a~~i~~  262 (416)
T PRK15099        234 AYVMMRNLLAAHYSWDEVG--IWQGVSSISD  262 (416)
T ss_pred             HHHHHHHHHHhcCCHHHhh--HHHHHHHHHH
Confidence            9998888885 99998877  8998888743

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=99.83  E-value=2.5e-21  Score=154.47  Aligned_cols=160  Identities=23%  Similarity=0.387  Sum_probs=154.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhhHHHHHHHHHHHH
Q 021824           44 PMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCL  123 (307)
Q Consensus        44 p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~  123 (307)
                      |.+++++...+...+|+.+++++|++++++++++.++.++. ..+..|++++..+.+||++|++|+|++++..+.+..+.
T Consensus         1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~   79 (162)
T PF01554_consen    1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS   79 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence            88999999999999999999999999999999999999998 88999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH-Hhhhhh
Q 021824          124 FLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAAL-CLHIPI  201 (307)
Q Consensus       124 ~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~~~~~-~~~i~l  201 (307)
                      ++++++.. +.+++.+++..+++.|+|+.+.+.+|+++..++.|+..+.....+++++.||++..++.++++. ++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l  159 (162)
T PF01554_consen   80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL  159 (162)
T ss_dssp             HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred             hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence            99999999 5588999999999999999999999999999999999999999999999999999999999996 999999


Q ss_pred             HhH
Q 021824          202 CWS  204 (307)
Q Consensus       202 ~~~  204 (307)
                      +|+
T Consensus       160 ~yl  162 (162)
T PF01554_consen  160 AYL  162 (162)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            985

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>PRK15099 O-antigen translocase; Provisional

Probab=99.82  E-value=7.1e-18  Score=154.87  Aligned_cols=201  Identities=10%  Similarity=0.044  Sum_probs=175.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchh
Q 021824           31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVG-HLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQY  109 (307)
Q Consensus        31 ~~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~-~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~  109 (307)
                      .++.+|+++++|.|..++++...+....|+.+++ .+|++++|.|+.+.++.+.+...+..+++++..|.++++   +|+
T Consensus       210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~  286 (416)
T PRK15099        210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEK  286 (416)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCh
Confidence            3678899999999999999999999999999997 579999999999999977544788999999999999995   567


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH
Q 021824          110 QRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMF  188 (307)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~  188 (307)
                      ++.++..++.......++.+.+ .+++++++++.++.+|+  .+.+.+++++++++.++...+..+.......++++...
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~  364 (416)
T PRK15099        287 RDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYI  364 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999888888 55799999999987654  34578899999999998888887777777888999999


Q ss_pred             HHHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhc
Q 021824          189 LSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFS  238 (307)
Q Consensus       189 ~~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~  238 (307)
                      ...+...++++++++++++.  +|..|+++++.+++.+......+...++
T Consensus       365 ~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~~~  412 (416)
T PRK15099        365 LAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFLLY  412 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98888899999999999944  9999999999999999998877655443

>PRK10459 colanic acid exporter; Provisional

Probab=99.79  E-value=1.4e-16  Score=149.53  Aligned_cols=200  Identities=15%  Similarity=0.114  Sum_probs=176.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhh
Q 021824           32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ  110 (307)
Q Consensus        32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~-g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~  110 (307)
                      ++..|++++++.|...+++...+...+|+.++|.+ |++++|.|+.+.++.+++...+...++....|..++.  ++|.+
T Consensus       203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~  280 (492)
T PRK10459        203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE  280 (492)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence            57789999999999999999999999999999995 9999999999999998874566666888899999886  56778


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 021824          111 RIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFL  189 (307)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~  189 (307)
                      +.++.+++.......+++|+. .+...+++++.++.+++  ...+...+++++++..+..+.......+++.||++..+.
T Consensus       281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~  358 (492)
T PRK10459        281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK  358 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence            899999999999999999988 66888999998876544  466889999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 021824          190 SSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKF  237 (307)
Q Consensus       190 ~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~  237 (307)
                      .+++..+++++..+.+...  +|..|+++|+.+++.+...+..++.+|
T Consensus       359 ~~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~  404 (492)
T PRK10459        359 WNVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIK  404 (492)
T ss_pred             HHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988888744  899999999999999988887776644

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=99.75  E-value=1.4e-15  Score=142.30  Aligned_cols=199  Identities=16%  Similarity=0.176  Sum_probs=177.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchh
Q 021824           31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQY  109 (307)
Q Consensus        31 ~~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~-g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~  109 (307)
                      .++.+|++++.++|..++.+...+.+.+|+.+++.+ |++++|.|+.++++.... ..+..+++.+..|..++.+.++|.
T Consensus       208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~  286 (480)
T COG2244         208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR  286 (480)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence            378999999999999999999999999999999995 999999999999999887 999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH
Q 021824          110 QRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMF  188 (307)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~  188 (307)
                      ++.++..+++......+++|.. .+..++++++..+.+++.  ..+...+++++++.++..+.......+++.|+++..+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~  364 (480)
T COG2244         287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL  364 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence            9999999999999999999999 668899999988766543  2378889999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHH
Q 021824          189 LSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYM  235 (307)
Q Consensus       189 ~~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~  235 (307)
                      ..+.++.++|++++++++  +.+|..|++.++ .+.........+..
T Consensus       365 ~~~~~~~i~~~~l~~~li--~~~g~~g~~~a~-~~~~~~~~~~~~~~  408 (480)
T COG2244         365 LISLISALLNLILNLLLI--PRFGLIGAAIAT-ASVIALALLLFYIL  408 (480)
T ss_pred             HHHHHHHHHHHHHHhHHH--HhhhhhhHHHHH-HHHHHHHHHHHHHH
Confidence            999999999999999999  559999999999 44333333333333

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.68  E-value=8.7e-14  Score=128.77  Aligned_cols=231  Identities=12%  Similarity=0.082  Sum_probs=188.4

Q ss_pred             hChH-HHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 021824           66 LGQL-ALSSTAMAISLASVTGFSVL-LGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLV  142 (307)
Q Consensus        66 ~g~~-~~a~~~i~~~l~~~~~~~~~-~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~  142 (307)
                      +|.+ +..+|.++.++.+++...+. .+++++..|...+.. ++++|+.++..+.......++.+.++ +.++++++++.
T Consensus         5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~   83 (451)
T PF03023_consen    5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR   83 (451)
T ss_pred             hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5766 67899999999998844454 468999999999999 88889999999988888888888877 55889999999


Q ss_pred             Hh--CCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHhhhhhHhHhhhccCCc---cchhH
Q 021824          143 LI--GQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLG---NLGGA  217 (307)
Q Consensus       143 ~~--~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~G---~~Ga~  217 (307)
                      ++  +.|++..+.+.+.++++++..++..+..++.+++|+.+|...+....+...+..++..+++.  ...|   +.+.+
T Consensus        84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~--~~~~~~~i~~la  161 (451)
T PF03023_consen   84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLS--NSWGQENIYALA  161 (451)
T ss_pred             HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHH--HhcCchHHHHHH
Confidence            88  44778899999999999999999999999999999999999998888887777666555554  3366   88999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHH
Q 021824          218 LAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVL  297 (307)
Q Consensus       218 ~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~  297 (307)
                      +|..++.+++.++.....+|...+.+...++   ..+..|++.+...|..+..........+...+++.++++.++  +.
T Consensus       162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs--~l  236 (451)
T PF03023_consen  162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKFDW---RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVS--AL  236 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCcccccCCC---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHH--HH
Confidence            9999999999999888877665432221111   124467999999999999989888888888999999999887  66


Q ss_pred             HHHhhhc
Q 021824          298 SVWYVDI  304 (307)
Q Consensus       298 ~i~~~i~  304 (307)
                      +...++.
T Consensus       237 ~YA~~l~  243 (451)
T PF03023_consen  237 NYAQRLY  243 (451)
T ss_pred             HHHHHHH
Confidence            6555543

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.58  E-value=1.3e-13  Score=123.29  Aligned_cols=130  Identities=22%  Similarity=0.330  Sum_probs=122.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhh
Q 021824           31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ  110 (307)
Q Consensus        31 ~~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~  110 (307)
                      .++.+|++++++.|.+++++...+...+|+.+++++|++++++|+++.++.++. ..+..+++++..|.+++++++||.+
T Consensus       211 ~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~  289 (342)
T TIGR00797       211 DWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLL-FMPAFGFGIAVSILVGQALGAGDPK  289 (342)
T ss_pred             CHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            377899999999999999999999999999999999999999999999999987 8999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q 021824          111 RIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWL  161 (307)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~  161 (307)
                      +.++..+++....+.++++.. +++++++++..++.+|+++.+.+..++++.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~  341 (342)
T TIGR00797       290 RAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV  341 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            999999999999999999988 668899999999999999999999988875

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.55  E-value=3.1e-11  Score=111.25  Aligned_cols=263  Identities=13%  Similarity=0.043  Sum_probs=202.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hChH-HHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHhhccchhhhH
Q 021824           36 KKQGYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQL-ALSSTAMAISLASVTGFSVLLG-MASALETLCGQAYGAQQYQRI  112 (307)
Q Consensus        36 ~~il~~~~p~~i~~~~~~l~~~i~~~~i~~-~g~~-~~a~~~i~~~l~~~~~~~~~~~-i~~a~~~~~s~~~g~~~~~~~  112 (307)
                      ++++|.++-....++...+.+++-..+++. +|.+ ..++|.++.++.+++--.+..| ++++..|...++..++++|+.
T Consensus         7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~   86 (518)
T COG0728           7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA   86 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence            455566666666677777788886666666 5885 6789999999999985555544 589999999999988888888


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh-CC--ChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH
Q 021824          113 GTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLI-GQ--DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMF  188 (307)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~-~~--~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~  188 (307)
                      ++.......+...+.+..+ +..++++++++.. ..  |++....+....+++.+..++..+.....+.+++.++...+.
T Consensus        87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a  166 (518)
T COG0728          87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA  166 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence            8888877766666666666 4577888888454 33  344444688889999999999999999999999999999998


Q ss_pred             HHHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHHHHHHhHHHH
Q 021824          189 LSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAV  268 (307)
Q Consensus       189 ~~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  268 (307)
                      +..+.-++.-+...+++....+....+.++++.++-+.+.++....++|.....+....++   -+..|++.+...|..+
T Consensus       167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~---~~~lk~~~~~~~p~~l  243 (518)
T COG0728         167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFK---DPGLKRFLKLMLPALL  243 (518)
T ss_pred             hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCC---chhHHHHHHHHHHHHH
Confidence            8887777777755555554322236688899999999999999999988753322222221   1567799999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHhhh
Q 021824          269 MICLEWWSFELLILMSGLLPNPQLETSVLSVWYVD  303 (307)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~i~~~i  303 (307)
                      ..........+.+.+++.+.++.++  .+....++
T Consensus       244 ~~sisQi~lli~~~iAS~l~~Gsis--~l~YA~rl  276 (518)
T COG0728         244 GVSISQINLLIDTAIASFLAEGSVS--WLYYADRL  276 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccHH--HHHHHHHH
Confidence            9999999999999999999998877  55555544

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=99.44  E-value=5.8e-10  Score=95.96  Aligned_cols=249  Identities=15%  Similarity=0.182  Sum_probs=173.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhhHHHHHH
Q 021824           39 GYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTY  117 (307)
Q Consensus        39 l~~~~p~~i~~~~~~l~~~i~~~~i~~-~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~  117 (307)
                      +|-+.-...+++...+.+.+-..++.+ +|+++.|.++....+.+++......|++++.....++...+  .++.+....
T Consensus         2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~   79 (273)
T PF01943_consen    2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS   79 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence            455666777888888888888888888 59999999999999998874455888999998888877543  334444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHh
Q 021824          118 TAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCL  197 (307)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~~~~~~~  197 (307)
                      ......++.+++.......    ...+.. ++.   ...+........++.........++++.++.+.....++...+.
T Consensus        80 ~~~~~~~~~~~i~~~~~~~----~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (273)
T PF01943_consen   80 SVLFLLLIFSLIFLLILLI----ASFFGN-PSL---SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL  151 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHcCC-chH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444443333333322222    123333 322   12222222222257788889999999999999999999999888


Q ss_pred             hhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHHHHHHhHHHHHHHHHHHHH
Q 021824          198 HIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSF  277 (307)
Q Consensus       198 ~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  277 (307)
                      ..++...+... ..+..+..++..++..+..++..++.+|+.+     .++...+++..+++.+.+.|.....+......
T Consensus       152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (273)
T PF01943_consen  152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR-----PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYS  225 (273)
T ss_pred             HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88776666644 2348888899999998888887777765532     11122235777899999999999999999998


Q ss_pred             HHHHHHHhcC-CchhhhhHHHHHHhhhcc
Q 021824          278 ELLILMSGLL-PNPQLETSVLSVWYVDID  305 (307)
Q Consensus       278 ~~~~~~~~~~-g~~~~a~~~~~i~~~i~~  305 (307)
                      .....+++.+ |+.+++  -|++..++..
T Consensus       226 ~~d~~ii~~~~g~~~vg--~Y~~a~~l~~  252 (273)
T PF01943_consen  226 QIDRLIIGYFLGPEAVG--IYSVAYRLAS  252 (273)
T ss_pred             HhHHHHHHHhCCHHHHH--HHHHHHHHHH
Confidence            8888877776 666766  7887777654

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.44  E-value=6e-13  Score=122.81  Aligned_cols=211  Identities=14%  Similarity=0.087  Sum_probs=191.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCh--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccch
Q 021824           31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQ--LALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQ  108 (307)
Q Consensus        31 ~~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~--~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~  108 (307)
                      .++.+++++++++|..+...++.-...+-....|.+++  .++++.++........ +.+..+++.+.++.+++.+|++|
T Consensus       242 ~~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~-~~~~~~~~~a~strv~neLGag~  320 (473)
T KOG1347|consen  242 EFDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWH-LMIPGAFSAAVSTRVSNELGAGK  320 (473)
T ss_pred             hhhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHcCCC
Confidence            37889999999999999999999999999999999864  6899999999999887 88888999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHH
Q 021824          109 YQRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPM  187 (307)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~  187 (307)
                      .+++|.....+...++.++.... .++...+.+...|..|+|+.+...+..+++++..++++.+.+..+..+|.|..+..
T Consensus       321 p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~g  400 (473)
T KOG1347|consen  321 PKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIG  400 (473)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccce
Confidence            99999999999999999998888 66888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-HHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccc
Q 021824          188 FLSSCAA-LCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACA  242 (307)
Q Consensus       188 ~~~~~~~-~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~  242 (307)
                      .+.++.+ .++.++....+.+..++|..|.|++...+...+...+.....+.+|.+
T Consensus       401 a~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~  456 (473)
T KOG1347|consen  401 AVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKN  456 (473)
T ss_pred             EEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccHHH
Confidence            9999988 888899888888778899999999999997777777777766666653

>PRK10459 colanic acid exporter; Provisional

Probab=99.33  E-value=1.2e-09  Score=102.56  Aligned_cols=246  Identities=10%  Similarity=0.054  Sum_probs=171.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhhHHH
Q 021824           36 KKQGYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGT  114 (307)
Q Consensus        36 ~~il~~~~p~~i~~~~~~l~~~i~~~~i~~-~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~  114 (307)
                      ++..+-+....++++...+.+++....+.+ +|+++.|.++.+..+..++......|++++..    |.. ++++    +
T Consensus         5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~~-~~~~----~   75 (492)
T PRK10459          5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QRQ-DISH----L   75 (492)
T ss_pred             HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hcc-cCCH----H
Confidence            455666777888888888899998888888 49999999999999998874455566766552    221 1222    2


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHH
Q 021824          115 QTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCA  193 (307)
Q Consensus       115 ~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~~~  193 (307)
                      .......+....+++.. +.+.+++++..++ ++++    ....+++..+..++..+.....+.++...+.+........
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~  150 (492)
T PRK10459         76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEIS  150 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHH
Confidence            33444555666666655 3455566665554 4444    3346778888888888888899999999999988888888


Q ss_pred             HHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHHHHHHhHHHHHHHHH
Q 021824          194 ALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLE  273 (307)
Q Consensus       194 ~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  273 (307)
                      ..++..++...+.. .++|+.+..++..++..+..++..... +++++.    ++ ..+++..|++++.+.|........
T Consensus       151 ~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~-~~~~~~----~~-~~~~~~~k~ll~~~~~~~~~~~~~  223 (492)
T PRK10459        151 AVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFG-RKIYRP----AL-HFSLASVKPNLSFGAWQTAERIIN  223 (492)
T ss_pred             HHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHh-cccCCc----cc-eecHHHHHHHHhhhHHHHHHHHHH
Confidence            87777766655543 358899999999999888776543322 222211    11 122455689999999999999888


Q ss_pred             HHHHHHHHHHHhcC-CchhhhhHHHHHHhhhc
Q 021824          274 WWSFELLILMSGLL-PNPQLETSVLSVWYVDI  304 (307)
Q Consensus       274 ~~~~~~~~~~~~~~-g~~~~a~~~~~i~~~i~  304 (307)
                      .........+++.+ |+.+++  .|+...++.
T Consensus       224 ~~~~~~d~~~lg~~lg~~~vG--~Y~~A~~l~  253 (492)
T PRK10459        224 YLNTNIDTILIGRILGAEVLG--GYNLAYNVA  253 (492)
T ss_pred             HHHhcCchhhhhHhhchHhhh--hHHHHHHHH
Confidence            88888888876665 777766  666665553

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=99.22  E-value=5.2e-08  Score=82.86  Aligned_cols=226  Identities=19%  Similarity=0.238  Sum_probs=150.3

Q ss_pred             HHHHHHHHHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021824           55 LQVVSMMMVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL  133 (307)
Q Consensus        55 ~~~i~~~~i~~-~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (307)
                      .+++-..++++ +|+++.|.|+....+..+.......|+.+....    . .++++++.++..+.......+.+++..++
T Consensus         3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (251)
T PF13440_consen    3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----S-AARDKQDIRSLLRFSLLVSLLLAVILAIL   77 (251)
T ss_pred             HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-hccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667777 599999999999999988733334555555433    2 23455566666666655544444433322


Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHhhhhhHhHhhhccCCcc
Q 021824          134 WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGN  213 (307)
Q Consensus       134 ~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~G~  213 (307)
                         ...+..++ .+++    ...++....+..++..+....++.+++.+|.+..........+....+...+... +.+.
T Consensus        78 ---~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  148 (251)
T PF13440_consen   78 ---AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLNL  148 (251)
T ss_pred             ---HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-HhhH
Confidence               11222233 3332    3345667778888899999999999999999999999999987775444444432 2377


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHHHhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-CCchhh
Q 021824          214 LGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGL-LPNPQL  292 (307)
Q Consensus       214 ~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~~~  292 (307)
                      .+..++..++..+..++.....+++  .   ..+.   +.+. ++..+.+.|.....+..+........+++. +|+.++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~  219 (251)
T PF13440_consen  149 WSILLAFIISALLALLISFYLLRRK--L---RLSF---KFSW-RRLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAV  219 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc--c---CCCc---hhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            8888888888887776655422211  1   1111   1122 247899999999999999999998888888 888887


Q ss_pred             hhHHHHHHhhhcc
Q 021824          293 ETSVLSVWYVDID  305 (307)
Q Consensus       293 a~~~~~i~~~i~~  305 (307)
                      +  .+++..++..
T Consensus       220 g--~y~~a~~l~~  230 (251)
T PF13440_consen  220 G--IYSVAQRLAS  230 (251)
T ss_pred             H--HHHHHHHHHH
Confidence            7  7777766543

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=99.08  E-value=3.3e-08  Score=92.58  Aligned_cols=248  Identities=16%  Similarity=0.173  Sum_probs=171.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhh
Q 021824           33 GEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR  111 (307)
Q Consensus        33 ~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~-~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~  111 (307)
                      ...+++.|-+.-...+++...+...+....+++ +|+++.|.++.+..+..++......|+..+....++++.+++++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~   82 (480)
T COG2244           3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL   82 (480)
T ss_pred             hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence            345677778888888899999999999898988 5999999999999999998555568999999999999887776666


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 021824          112 IGTQ-TYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS  190 (307)
Q Consensus       112 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~  190 (307)
                      .+.. ...........+.+.........+.      ++    .....+++..++.+.........+.+|+.++.+.....
T Consensus        83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (480)
T COG2244          83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS  152 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence            6655 5555555555444444333323222      22    24445778899999999999999999999999999887


Q ss_pred             HHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHH-hccccccccCCCCHHHHhcHHHHHHHHhHHHHH
Q 021824          191 SCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMK-FSTACAESRVPISMELFQGIGEFFHFAIPSAVM  269 (307)
Q Consensus       191 ~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  269 (307)
                      .+.. ..-+...+.+..   ....+..++...+.........++.. ++++..+.   ..+..++..++.++.++|....
T Consensus       153 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~p~~~~  225 (480)
T COG2244         153 IVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRP---ILRFSLALLKELLRFGLPLLLS  225 (480)
T ss_pred             HHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc---ccCchhHHHHHHHHHhhHHHHH
Confidence            4444 222222222221   34555666666666666655555543 22211111   1122467788999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcC-CchhhhhHHHHH
Q 021824          270 ICLEWWSFELLILMSGLL-PNPQLETSVLSV  299 (307)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~-g~~~~a~~~~~i  299 (307)
                      ...........+.+.+.+ |+.+++  -|+.
T Consensus       226 ~~~~~l~~~~D~~~i~~~l~~~~vG--~Y~~  254 (480)
T COG2244         226 SLLNFLFTNIDTLLLGLFLGPAQVG--IYSA  254 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHhe--eccc
Confidence            999999998888877655 666655  4443

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=98.94  E-value=4.6e-06  Score=71.42  Aligned_cols=254  Identities=13%  Similarity=-0.002  Sum_probs=165.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCh---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccch
Q 021824           32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQ---LALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQ  108 (307)
Q Consensus        32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~---~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~  108 (307)
                      ....+++.++-+|..++++...+.-.+.+.-+++-.+   +.+|+|+++..+.-++ ..+...+-+....++     +++
T Consensus         7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V-----~s~   80 (345)
T PF07260_consen    7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFV-----NSK   80 (345)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHh-----cch
Confidence            3557889999999999999999999998888876433   3499999999999887 777777766665554     332


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-HHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchh
Q 021824          109 YQRIGTQTYTAIFCLFLVCFPLSFL--WIYAGKLL-VLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLII  185 (307)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~-~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~  185 (307)
                      +++.+ .+......+.+.......+  --+...++ ..++.++++.+.+...+.++.+..++.++...+++++.-.+++.
T Consensus        81 rsrr~-~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~  159 (345)
T PF07260_consen   81 RSRRK-AVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW  159 (345)
T ss_pred             hhhHH-HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence            22211 2222222222222221211  22333444 45578999999999999999999999999999999888667777


Q ss_pred             HHHHHHHHHHHhhhhhHhHhhhc---cCCccchhHHHHHHHHHHHH-HHHHHHHHhccccccccCCCCHHHHhcHHHHHH
Q 021824          186 PMFLSSCAALCLHIPICWSLVYK---SGLGNLGGALAIGISNWLNV-TFLAIYMKFSTACAESRVPISMELFQGIGEFFH  261 (307)
Q Consensus       186 ~~~~~~~~~~~~~i~l~~~li~~---~~~G~~Ga~~a~~is~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (307)
                      .....++...+..+++...+...   +.-+..--..+...+..+.+ .+.+.|++..+...+...+....+....+++.+
T Consensus       160 iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~  239 (345)
T PF07260_consen  160 IVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLK  239 (345)
T ss_pred             EeehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHH
Confidence            77777777666666665555532   21222222233333333332 222333333333323222233444577889999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHhc-CCchhh
Q 021824          262 FAIPSAVMICLEWWSFELLILMSGL-LPNPQL  292 (307)
Q Consensus       262 ~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~~~  292 (307)
                      +.+|.+........+=-+.+.+.++ +|.++-
T Consensus       240 F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a  271 (345)
T PF07260_consen  240 FWWPLALVLATQRISRPLVNLFVSRDLSGSQA  271 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence            9999999999999999999999999 665543

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=98.91  E-value=8.7e-08  Score=74.74  Aligned_cols=79  Identities=20%  Similarity=0.235  Sum_probs=73.7

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 021824          158 MIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKF  237 (307)
Q Consensus       158 l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~  237 (307)
                      +++++++.++..+....++.+++.||++..+..+..+.++|++++++++  |.+|..|+++|+.+++.....+..++.+|
T Consensus         2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k   79 (146)
T PF14667_consen    2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK   79 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999999999999999999999999999998  55999999999999999999888877766


Q ss_pred             c
Q 021824          238 S  238 (307)
Q Consensus       238 ~  238 (307)
                      +
T Consensus        80 ~   80 (146)
T PF14667_consen   80 K   80 (146)
T ss_pred             H
Confidence            5

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=98.83  E-value=1.2e-06  Score=82.43  Aligned_cols=203  Identities=11%  Similarity=0.037  Sum_probs=163.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchh---
Q 021824           36 KKQGYIAAPMVAVTLSQYLLQVVSMMMVGH--L-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQY---  109 (307)
Q Consensus        36 ~~il~~~~p~~i~~~~~~l~~~i~~~~i~~--~-g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~---  109 (307)
                      ++.+++......+.+.-.+.+--|+.++..  + ..++.|.|++++++-+++.=.+...+....-...++...+++.   
T Consensus       253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~  332 (549)
T PF04506_consen  253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKK  332 (549)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhh
Confidence            677888889999999999999999999988  5 6679999999999999887888999999999999988754432   


Q ss_pred             ------hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Q 021824          110 ------QRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQS  182 (307)
Q Consensus       110 ------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g  182 (307)
                            ++..+.....+++...+++++. ..-..++.++.+++++......+...+++++..+|+.+++++.-.+.++..
T Consensus       333 ~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a  412 (549)
T PF04506_consen  333 QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVA  412 (549)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhC
Confidence                  4466677777777777777766 446777788888766555555678889999999999999999999999887


Q ss_pred             chhHHHHHH---HHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 021824          183 LIIPMFLSS---CAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFST  239 (307)
Q Consensus       183 ~~~~~~~~~---~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~  239 (307)
                      +.+.....+   ....++.+..++.+... ++|..|..+|.++......+....++++..
T Consensus       413 ~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~  471 (549)
T PF04506_consen  413 SESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRYF  471 (549)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655444433   34455566778888865 799999999999999999999888886653

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.63  E-value=4e-06  Score=74.89  Aligned_cols=202  Identities=9%  Similarity=0.002  Sum_probs=145.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh---ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhhHHH
Q 021824           38 QGYIAAPMVAVTLSQYLLQVVSMMMVGHL---GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGT  114 (307)
Q Consensus        38 il~~~~p~~i~~~~~~l~~~i~~~~i~~~---g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~  114 (307)
                      ..+...-..-+.+.-++.+--|..++...   +-.+.|.|.+.++.-++..=.+...+....-...+|....++.|+.++
T Consensus       241 ~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~  320 (530)
T KOG2864|consen  241 LLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVKK  320 (530)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHH
Confidence            33344444455666777777777777642   445778888888887777677888899988888888887776666555


Q ss_pred             ---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH--
Q 021824          115 ---QTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMF--  188 (307)
Q Consensus       115 ---~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~--  188 (307)
                         .....+.+...+++... .....++..+.+++++......+...+++++..+|+.+++.+.-++..+.++.+..-  
T Consensus       321 a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~  400 (530)
T KOG2864|consen  321 AVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKH  400 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhc
Confidence               44555555556665544 335566777787776544444556789999999999999999999999876554433  


Q ss_pred             -HHHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhcccc
Q 021824          189 -LSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTAC  241 (307)
Q Consensus       189 -~~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~  241 (307)
                       ....+..++.++++|+++..  +|..|..+|.++...+.-+...+++++..+.
T Consensus       401 n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~yr~  452 (530)
T KOG2864|consen  401 NKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHYYRD  452 (530)
T ss_pred             ccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             23445567777889999966  8889999999999998888877777655443

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=97.88  E-value=0.00014  Score=62.25  Aligned_cols=72  Identities=18%  Similarity=0.229  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 021824           32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAY  104 (307)
Q Consensus        32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~-g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~  104 (307)
                      ++..|++++.+.|..++.+...+....|+.+++++ |++++|.|+.+.++...+ ..+...+.+...|.++|.+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~-~~~~~~~~~~~~P~~s~l~  273 (273)
T PF01943_consen  201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAI-SFLLSSISTVLFPRLSRLW  273 (273)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC
Confidence            78899999999999999999999999999999996 999999999999999998 8899999999999998853

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=97.08  E-value=0.0061  Score=51.51  Aligned_cols=66  Identities=20%  Similarity=0.235  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hChHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHh
Q 021824           37 KQGYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLALSSTAMAISLASVTGF-SVLLGMASALETLCGQA  103 (307)
Q Consensus        37 ~il~~~~p~~i~~~~~~l~~~i~~~~i~~-~g~~~~a~~~i~~~l~~~~~~-~~~~~i~~a~~~~~s~~  103 (307)
                      +.++.+.|..++.+........|..+++. +|++++|.|+.+.++.+.+ . .+..++++...|.++|.
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~-~~~~~~~i~~~~~p~lar~  251 (251)
T PF13440_consen  184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLP-ASLLSSAISSVFFPKLARM  251 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCC
Confidence            47899999999999999999999999999 7999999999999999987 6 89999999999998873

>COG4267 Predicted membrane protein [Function unknown]

Probab=93.46  E-value=5.6  Score=35.78  Aligned_cols=189  Identities=13%  Similarity=0.126  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh-hChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchh
Q 021824           32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMM-MVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQY  109 (307)
Q Consensus        32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~-~i~~-~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~  109 (307)
                      +...........|-.++-....+.+.+..- .+.. ..+.-++.........    .++..|++...+..+|...=+||.
T Consensus        22 rA~~Ys~iVs~gPwll~i~~i~~i~iis~~~~v~~~~~~~Flssv~Y~~ifS----~IiTgg~q~iiTRfiSD~lF~k~~   97 (467)
T COG4267          22 RAYFYSGIVSVGPWLLSIVSIILIGIISSQIVVPRVLSPQFLSSVTYCFIFS----QIITGGFQLIITRFISDCLFEKKQ   97 (467)
T ss_pred             HHHHHhHhheecchHHHHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHH
Confidence            444455555555655544444433333221 1111 1222233333222222    445677777777888888777777


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 021824          110 QRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFL  189 (307)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~  189 (307)
                      +++.....-...++...+..+..       ++....++...     .|=...+......+..=....++.+.+|.+....
T Consensus        98 ~kIlpsy~Gvi~lv~~~a~~ig~-------~vf~~~~~~si-----~yk~l~~~~FV~m~~~Wi~~iFlS~lK~y~~iv~  165 (467)
T COG4267          98 RKILPSYIGVILLVTLVAGVIGL-------IVFFVNNQYSI-----VYKILACALFVGMSLVWILMIFLSGLKKYKLIVL  165 (467)
T ss_pred             HHHhHhHHHHHHHHHHHHHHHHH-------HhhhhcCchhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77776665555444444433331       11111222211     1111223333444555566778889999999999


Q ss_pred             HHHHHHHhhhhhHhHhhhccCCccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 021824          190 SSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFST  239 (307)
Q Consensus       190 ~~~~~~~~~i~l~~~li~~~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~  239 (307)
                      .-.++.++..++..++-   +++..|.-++..++.+........++.|.-
T Consensus       166 sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~f  212 (467)
T COG4267         166 SFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRYF  212 (467)
T ss_pred             HHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence            99999999998887774   358999999999999999888888776653

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=89.43  E-value=21  Score=34.32  Aligned_cols=263  Identities=13%  Similarity=-0.012  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hhhChHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhhHHHHHHHH
Q 021824           42 AAPMVAVTLSQYLLQVVSMMMV-GHLGQLALSSTAM-AISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTA  119 (307)
Q Consensus        42 ~~p~~i~~~~~~l~~~i~~~~i-~~~g~~~~a~~~i-~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~  119 (307)
                      +.-.++.+++..+.+++-+.++ -+.+++.+|..++ ..-+.+-+.+.-=-++-.|....-.+...++|.++..+..+.+
T Consensus         7 as~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~wls   86 (549)
T PF04506_consen    7 ASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLWLS   86 (549)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccccc
Confidence            3445566666666666655554 4469988877633 2222222223334455555554333322222333444444444


Q ss_pred             HHHHHHHHHHHHHHHH--H--HHHH--HHHhCC-Chh---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHc----Cchh
Q 021824          120 IFCLFLVCFPLSFLWI--Y--AGKL--LVLIGQ-DPQ---ISHEVGKFMIWLLPALFAYATMQPLIRYFQSQ----SLII  185 (307)
Q Consensus       120 ~~~~~~~~~~~~~~~~--~--~~~i--~~~~~~-~~~---~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~----g~~~  185 (307)
                      ..+..++.+++..+.+  .  +..+  ..+... .++   ..+.....+.+...+.....+...+-...|..    -+.+
T Consensus        87 ~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~Rv~  166 (549)
T PF04506_consen   87 VPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLRVK  166 (549)
T ss_pred             CcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhheeeE
Confidence            4444444443332211  0  1111  111111 111   11223334455555555555555543333333    3444


Q ss_pred             HHHHHHHHHHHhhhhhHhHhhhc-cCCcc-----ch-hHHHHHHHHHHHHHHHHHHH-Hhcccccccc----CCCCH---
Q 021824          186 PMFLSSCAALCLHIPICWSLVYK-SGLGN-----LG-GALAIGISNWLNVTFLAIYM-KFSTACAESR----VPISM---  250 (307)
Q Consensus       186 ~~~~~~~~~~~~~i~l~~~li~~-~~~G~-----~G-a~~a~~is~~~~~~~~~~~~-~~~~~~~~~~----~~~~~---  250 (307)
                      .-........+.+..+..+.... .+++.     .+ +.++...+++...+...... .......+.+    .+...   
T Consensus       167 ~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~~~  246 (549)
T PF04506_consen  167 AESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISSGNP  246 (549)
T ss_pred             echHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhcccccccccc
Confidence            44444444444444443333211 11111     11 23555566655543332211 1111110111    11111   


Q ss_pred             HHHhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc---CCchhhhhHHHHHHhhhccc
Q 021824          251 ELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGL---LPNPQLETSVLSVWYVDIDC  306 (307)
Q Consensus       251 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~---~g~~~~a~~~~~i~~~i~~~  306 (307)
                      +...--++..+.......+++.-..--+--..++..   ....+.+  .|++..|..++
T Consensus       247 ~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QG--vY~lv~N~GSL  303 (549)
T PF04506_consen  247 KSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQG--VYALVSNYGSL  303 (549)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhh--HHHHHhhHHHH
Confidence            111123567777777777777666666655555555   3444555  78888888775

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

>COG4267 Predicted membrane protein [Function unknown]

Probab=81.40  E-value=42  Score=30.47  Aligned_cols=113  Identities=12%  Similarity=0.032  Sum_probs=61.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH
Q 021824          110 QRIGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMF  188 (307)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~  188 (307)
                      +++....++.+.-..-+-...+ .+++.++.+..+++-++    .-.+.+++-.++.-+......+-...-=.++.+..+
T Consensus       320 ~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l  395 (467)
T COG4267         320 KKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YYLDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIAL  395 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            3444455555555555555556 45788899999987543    222333333443333322222222222346667777


Q ss_pred             HHHHHHHHhhhhhHhHhhhc-cCCccchhHHHHHHHHHH
Q 021824          189 LSSCAALCLHIPICWSLVYK-SGLGNLGGALAIGISNWL  226 (307)
Q Consensus       189 ~~~~~~~~~~i~l~~~li~~-~~~G~~Ga~~a~~is~~~  226 (307)
                      ..+..-.+.|-++++++... |++--.|..+|..++-.+
T Consensus       396 ~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv  434 (467)
T COG4267         396 ELTALFLISNGILTFIFLELGPGYYGVGFFLASFLYVLV  434 (467)
T ss_pred             hhhhHHHHHhHHHHHHHHHhCccceehHHHHHHHHHHHH
Confidence            77777788898898887642 443333444444444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	307
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	1e-48
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	2e-06

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score =  167 bits (425), Expect = 1e-48
 Identities = 53/265 (20%), Positives = 110/265 (41%), Gaps = 7/265 (2%)

Query: 34  EVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMA 93
           E      +A P++  +++Q  +  V  +M G +  + +++ ++A S+  +      +G+ 
Sbjct: 10  EASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASI-WLPSILFGVGLL 68

Query: 94  SALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHE 153
            AL  +  Q  GA +  +I  + +  +    LV  P+  +      ++  +  +  ++ +
Sbjct: 69  MALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATK 128

Query: 154 VGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSG--- 210
              +M  ++ A+ AY   Q L  +    SL  P  +     L L+IP+ W  VY      
Sbjct: 129 TVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAP 188

Query: 211 -LGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMEL--FQGIGEFFHFAIPSA 267
            LG +G  +A  I  W+ +  L  Y+  S   A  +V  +      + +   F    P A
Sbjct: 189 ELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVA 248

Query: 268 VMICLEWWSFELLILMSGLLPNPQL 292
             +  E   F ++ L+   L +  +
Sbjct: 249 AALFFEVTLFAVVALLVAPLGSTVV 273

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 26/202 (12%), Positives = 74/202 (36%), Gaps = 12/202 (5%)

Query: 41  IAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLC 100
           +  P+ A    +  L  V  ++V  LG   +++  +A++ +S+  F   + + +A+    
Sbjct: 243 LGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRV 301

Query: 101 GQAYGAQQYQRIGTQTYTAIFC-LFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMI 159
           G   G Q  +         +   L   C       ++  ++ +L  ++  +     + ++
Sbjct: 302 GHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLL 361

Query: 160 WLLPALF-----AYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNL 214
           +   A++             +R ++  +       +  +   L +P  + L   + L   
Sbjct: 362 FA--AIYQCMDAVQVVAAGSLRGYKDMT--AIFHRTFISYWVLGLPTGYILGMTNWLTEQ 417

Query: 215 G-GALAIGISNWLNVTFLAIYM 235
             GA    +   + ++  A+ +
Sbjct: 418 PLGAKGFWLGFIIGLSAAALML 439

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	307
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.97
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.92

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.97  E-value=8.8e-31  Score=241.44  Aligned_cols=273  Identities=19%  Similarity=0.286  Sum_probs=246.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhh
Q 021824           31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ  110 (307)
Q Consensus        31 ~~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~  110 (307)
                      .++..|++++.++|.+++++...+...+|+.+++++|++++|+++++.++..+. ..+..+++.+..+.++|++|++|++
T Consensus         7 ~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~~   85 (460)
T 3mkt_A            7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQH   85 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChh
Confidence            478899999999999999999999999999999999999999999999998876 8888999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 021824          111 RIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS  190 (307)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~  190 (307)
                      +.++..+.++.+.++++++..+++++.++++.+++.|++..+.+..|+++++++.++..+...+.+++|+.||++.++..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  165 (460)
T 3mkt_A           86 KIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVI  165 (460)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            99999999999999999997766888899998888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhHhHhhhc----cCCccchhHHHHHHHHHHHHHHHHHHHHhccccccc--cCCCCHHHHhcHHHHHHHHh
Q 021824          191 SCAALCLHIPICWSLVYK----SGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAES--RVPISMELFQGIGEFFHFAI  264 (307)
Q Consensus       191 ~~~~~~~~i~l~~~li~~----~~~G~~Ga~~a~~is~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  264 (307)
                      ++++.++|+++++++++.    |++|+.|+++|+.+++.+..++..++++++++..+.  +.++.+.+++..|++++.++
T Consensus       166 ~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  245 (460)
T 3mkt_A          166 GFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF  245 (460)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhh
Confidence            999999999999999975    479999999999999999999888877665433221  12222445677789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHhhhccc
Q 021824          265 PSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVWYVDIDC  306 (307)
Q Consensus       265 p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~i~~~i~~~  306 (307)
                      |..++.+.+...+.+.+.+++++|+.+++  +|++..++.++
T Consensus       246 p~~~~~~~~~~~~~~~~~~~~~~g~~~va--~~~i~~~i~~~  285 (460)
T 3mkt_A          246 PVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSL  285 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTSSHHHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcChHHHH--HHHHHHHHHHH
Confidence            99999999999999999999999998887  99999888653

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.92  E-value=2.4e-24  Score=198.31  Aligned_cols=206  Identities=13%  Similarity=0.165  Sum_probs=192.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccchhhh
Q 021824           32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR  111 (307)
Q Consensus        32 ~~~~~~il~~~~p~~i~~~~~~l~~~i~~~~i~~~g~~~~a~~~i~~~l~~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~  111 (307)
                      ++.+|++++++.|.+++.+...+...+|+.+++++|++++|+|+++.++.++. ..+..+++++..|.+++++|++|+|+
T Consensus       234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~~~~  312 (460)
T 3mkt_A          234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQDTKG  312 (460)
T ss_dssp             TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            56778999999999999999999999999999999999999999999999998 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 021824          112 IGTQTYTAIFCLFLVCFPLS-FLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS  190 (307)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~  190 (307)
                      .++..+.+..++..++++.+ +++++++++..++.+|+++.+.+..++++++++.++.+++.+..+++++.||++.++..
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  392 (460)
T 3mkt_A          313 AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR  392 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            99999999999999999998 66899999999998888889999999999999999999999999999999999999999


Q ss_pred             HHHHH-HhhhhhHhHhhhc----cC-CccchhHHHHHHHHHHHHHHHHHHHHhc
Q 021824          191 SCAAL-CLHIPICWSLVYK----SG-LGNLGGALAIGISNWLNVTFLAIYMKFS  238 (307)
Q Consensus       191 ~~~~~-~~~i~l~~~li~~----~~-~G~~Ga~~a~~is~~~~~~~~~~~~~~~  238 (307)
                      ++++. ++++++++++.+.    ++ +|+.|+|+|+.+++.+..++..+.++|.
T Consensus       393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~  446 (460)
T 3mkt_A          393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL  446 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99985 9999999999976    66 9999999999999999988876655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00